Psyllid ID: psy11677
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 462 | 2.2.26 [Sep-21-2011] | |||||||
| P54889 | 800 | Probable delta-1-pyrrolin | yes | N/A | 0.329 | 0.19 | 0.429 | 8e-29 | |
| Q9Z110 | 795 | Delta-1-pyrroline-5-carbo | yes | N/A | 0.261 | 0.152 | 0.472 | 1e-24 | |
| Q5R4M8 | 795 | Delta-1-pyrroline-5-carbo | yes | N/A | 0.261 | 0.152 | 0.472 | 1e-24 | |
| P54886 | 795 | Delta-1-pyrroline-5-carbo | yes | N/A | 0.261 | 0.152 | 0.472 | 1e-24 | |
| O04226 | 716 | Delta-1-pyrroline-5-carbo | yes | N/A | 0.227 | 0.146 | 0.490 | 8e-22 | |
| B0JWW5 | 431 | Gamma-glutamyl phosphate | yes | N/A | 0.147 | 0.157 | 0.594 | 2e-18 | |
| Q112S1 | 431 | Gamma-glutamyl phosphate | yes | N/A | 0.138 | 0.148 | 0.630 | 8e-18 | |
| A5CZ28 | 434 | Gamma-glutamyl phosphate | yes | N/A | 0.140 | 0.149 | 0.606 | 4e-17 | |
| Q8YV15 | 434 | Gamma-glutamyl phosphate | yes | N/A | 0.140 | 0.149 | 0.590 | 4e-17 | |
| Q3MH53 | 434 | Gamma-glutamyl phosphate | yes | N/A | 0.140 | 0.149 | 0.590 | 4e-17 |
| >sp|P54889|ALH13_CAEEL Probable delta-1-pyrroline-5-carboxylate synthase OS=Caenorhabditis elegans GN=alh-13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 100/156 (64%), Gaps = 4/156 (2%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
+ I DNDSLAA L+AEI+A+LLI++S+VNG+YT P EG+++++TY V FG
Sbjct: 235 MHISDNDSLAARLSAEIEAELLIILSNVNGVYTGPPDLEGSRLLYTYVPSENSGVTFGAN 294
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 148
SK GTGGM+SKV + AL+ GV+ VI NG+ ++AI VAG+KIGT F + G P
Sbjct: 295 SKFGTGGMESKVTACVNALNNGVTTVITNGLAQDAITDAVAGKKIGTMFCNTKGYE-GPP 353
Query: 149 VEVLAE---NVNLKMEILVNSATWALDRGVSVVICN 181
+E +AE + ++ L N A+ R ++ ++ +
Sbjct: 354 IEEVAEKCRDAGRQLAALSNKERGAMVRHLAALLVD 389
|
Caenorhabditis elegans (taxid: 6239) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 4EC: 1 |
| >sp|Q9Z110|P5CS_MOUSE Delta-1-pyrroline-5-carboxylate synthase OS=Mus musculus GN=Aldh18a1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 83/127 (65%), Gaps = 6/127 (4%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
+IS+KDNDSLAA LA E++ DLLI++SDV G++ P + AK+I + + +V FG
Sbjct: 240 VISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGT 299
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKE----AIKQIVAGRKIGTFFTDASAQ 143
KS+VG GGM++KV +A WAL G SVVI NG + I IV G+K+GTFF++ +
Sbjct: 300 KSRVGLGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSE--VK 357
Query: 144 SGGTPVE 150
G VE
Sbjct: 358 PAGPTVE 364
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q5R4M8|P5CS_PONAB Delta-1-pyrroline-5-carboxylate synthase OS=Pongo abelii GN=ALDH18A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 83/127 (65%), Gaps = 6/127 (4%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
+IS+KDNDSLAA LA E++ DLLI++SDV G++ P + AK+I + + +V FG
Sbjct: 240 VISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGT 299
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKE----AIKQIVAGRKIGTFFTDASAQ 143
KS+VG GGM++KV +A WAL G SVVI NG + I IV G+K+GTFF++ +
Sbjct: 300 KSRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSE--VK 357
Query: 144 SGGTPVE 150
G VE
Sbjct: 358 PAGPTVE 364
|
Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 83/127 (65%), Gaps = 6/127 (4%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
+IS+KDNDSLAA LA E++ DLLI++SDV G++ P + AK+I + + +V FG
Sbjct: 240 VISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGT 299
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKE----AIKQIVAGRKIGTFFTDASAQ 143
KS+VG GGM++KV +A WAL G SVVI NG + I IV G+K+GTFF++ +
Sbjct: 300 KSRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSE--VK 357
Query: 144 SGGTPVE 150
G VE
Sbjct: 358 PAGPTVE 364
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|O04226|P5CS_ORYSJ Delta-1-pyrroline-5-carboxylate synthase OS=Oryza sativa subsp. japonica GN=P5CS PE=2 SV=2 | Back alignment and function description |
|---|
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSE-MRDTVQFGQKSKV 91
DNDSLA +LA E++ADLLIL+SDV+G+Y+ P E +K+I TY E + + FG KS+V
Sbjct: 175 DNDSLAGLLALELKADLLILLSDVDGLYSGPPSEPSSKIIHTYIKEKHQQEITFGDKSRV 234
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
G GGM +KV +A A + G VVI +G + +I +++ G KIGT F
Sbjct: 235 GRGGMTAKVKAAVLASNSGTPVVITSGFENRSILKVLHGEKIGTLF 280
|
P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|B0JWW5|PROA_MICAN Gamma-glutamyl phosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=proA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 58/69 (84%), Gaps = 1/69 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
++TREEI +LL ++++IDLIIPRGS++ VR IQ ++ IPVLGHA+GICH+Y+DK+AD+
Sbjct: 182 LTTREEIQELLKLDQYIDLIIPRGSNEFVRYIQNNTR-IPVLGHADGICHLYIDKEADLS 240
Query: 315 KAIKIARSG 323
KAI+I G
Sbjct: 241 KAIRITVDG 249
|
Catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Microcystis aeruginosa (strain NIES-843) (taxid: 449447) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q112S1|PROA_TRIEI Gamma-glutamyl phosphate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=proA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 56/65 (86%), Gaps = 1/65 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
++TREE +LL +++++DLIIPRGS+ V+ +Q+ +Q IPVLGHAEGICHVYVDK ADI+
Sbjct: 181 LTTREETLELLKLDEYVDLIIPRGSNSFVKFVQENTQ-IPVLGHAEGICHVYVDKFADIQ 239
Query: 315 KAIKI 319
KA+KI
Sbjct: 240 KAVKI 244
|
Catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Trichodesmium erythraeum (strain IMS101) (taxid: 203124) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|A5CZ28|PROA_PELTS Gamma-glutamyl phosphate reductase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=proA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
+ TR ++ ++L M+K+IDLIIPRGS++ VR I S+ IPVLGHA+GICH+YVD+DADI+
Sbjct: 177 LETRSDVGEMLKMDKYIDLIIPRGSNEFVRYIMDNSR-IPVLGHADGICHLYVDEDADIQ 235
Query: 315 KAIKIA 320
A+KIA
Sbjct: 236 MAVKIA 241
|
Catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) (taxid: 370438) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q8YV15|PROA_NOSS1 Gamma-glutamyl phosphate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=proA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
++TREE +LL ++K++DLIIPRGS+ VR +Q+ ++ IPVLGHA+GICHVY+DK ADI
Sbjct: 184 LTTREETLELLRLDKYVDLIIPRGSNSFVRFVQENTR-IPVLGHADGICHVYIDKSADIE 242
Query: 315 KAIKIA 320
KAI ++
Sbjct: 243 KAIAVS 248
|
Catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q3MH53|PROA_ANAVT Gamma-glutamyl phosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=proA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
++TREE +LL ++K++DLIIPRGS+ VR +Q+ ++ IPVLGHA+GICHVY+DK ADI
Sbjct: 184 LTTREETLELLRLDKYVDLIIPRGSNSFVRFVQENTR-IPVLGHADGICHVYIDKSADIE 242
Query: 315 KAIKIA 320
KAI ++
Sbjct: 243 KAIAVS 248
|
Catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 462 | ||||||
| 195480859 | 704 | GE23278 [Drosophila yakuba] gi|194186487 | 0.614 | 0.403 | 0.557 | 5e-81 | |
| 193657053 | 795 | PREDICTED: delta-1-pyrroline-5-carboxyla | 0.313 | 0.182 | 0.698 | 1e-51 | |
| 194752327 | 776 | GF10939 [Drosophila ananassae] gi|190625 | 0.274 | 0.163 | 0.732 | 5e-50 | |
| 195592316 | 607 | GD15014 [Drosophila simulans] gi|1941978 | 0.272 | 0.207 | 0.724 | 8e-50 | |
| 383856461 | 785 | PREDICTED: delta-1-pyrroline-5-carboxyla | 0.277 | 0.163 | 0.730 | 9e-50 | |
| 195496667 | 776 | GE22600 [Drosophila yakuba] gi|194181891 | 0.274 | 0.163 | 0.724 | 1e-49 | |
| 195348707 | 776 | GM22423 [Drosophila sechellia] gi|194122 | 0.274 | 0.163 | 0.724 | 1e-49 | |
| 443693150 | 711 | hypothetical protein CAPTEDRAFT_165388 [ | 0.625 | 0.406 | 0.366 | 1e-49 | |
| 21357643 | 776 | CG7470, isoform A [Drosophila melanogast | 0.274 | 0.163 | 0.724 | 1e-49 | |
| 195440440 | 776 | GK10672 [Drosophila willistoni] gi|19416 | 0.274 | 0.163 | 0.724 | 1e-49 |
| >gi|195480859|ref|XP_002086697.1| GE23278 [Drosophila yakuba] gi|194186487|gb|EDX00099.1| GE23278 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 166/298 (55%), Positives = 211/298 (70%), Gaps = 14/298 (4%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
I IKDNDSL+AMLAAE+QADLLILMSDV+GIY K PWE+GAK++ TYTS+ ++++FG+K
Sbjct: 228 IPIKDNDSLSAMLAAEVQADLLILMSDVDGIYNKPPWEDGAKLMHTYTSDDSNSIEFGKK 287
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 148
SKVGTGGMDSKV +ATWALDRGVSVVICNGMQ++AIK I+ GRK+GTFFT+A+ + P
Sbjct: 288 SKVGTGGMDSKVKAATWALDRGVSVVICNGMQEKAIKTIIGGRKVGTFFTEATESANAVP 347
Query: 149 VEVLAENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQS 208
VEV+AENV+ + L+ + L R + + ++ +KQ+ IG ++
Sbjct: 348 VEVMAENVS-HSDFLLQNVGRVLRR---TRLADQLE---LKQVTV--PIGVLLVIFESRP 398
Query: 209 GGTP-VEVLAEIWKNE-TLNTTVPKKHAKTSQCKYFTKMLPRYPLH---SQVSTREEISD 263
P V LA N L H+ + + + L S VSTREEISD
Sbjct: 399 DSLPQVAALAMASANGLLLKGGKEAAHSNKALMELVKEALATVGAEHAVSLVSTREEISD 458
Query: 264 LLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIAR 321
LLSME HIDLIIPRGSSDLVRSIQQ+S HIPVLGHAEG+CHVY+D+DAD++KA++IAR
Sbjct: 459 LLSMENHIDLIIPRGSSDLVRSIQQQSLHIPVLGHAEGVCHVYIDRDADLQKALRIAR 516
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193657053|ref|XP_001947489.1| PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like isoform 1 [Acyrthosiphon pisum] gi|328704972|ref|XP_003242657.1| PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like isoform 2 [Acyrthosiphon pisum] gi|328704974|ref|XP_003242658.1| PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like isoform 3 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/146 (69%), Positives = 121/146 (82%), Gaps = 1/146 (0%)
Query: 18 NELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTS 77
++L +S +K+ISIKDNDSLAAMLAAE+ ADLLILMSDV+GI+T+ P +EGAKMIWTY S
Sbjct: 236 DDLIKSKGKKVISIKDNDSLAAMLAAEVSADLLILMSDVDGIFTRPPKQEGAKMIWTYNS 295
Query: 78 EMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
+M D +QFG+KS VGTGGMDSKV +ATWAL+RGVSVVICNGMQ++AIK IV GRKIGTFF
Sbjct: 296 DMADVIQFGKKSTVGTGGMDSKVQAATWALNRGVSVVICNGMQEKAIKSIVLGRKIGTFF 355
Query: 138 TDASAQSGGTPVEVLAENVNLKMEIL 163
T+A + TPVE LAEN IL
Sbjct: 356 TNAPT-ANATPVETLAENARYGSRIL 380
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194752327|ref|XP_001958474.1| GF10939 [Drosophila ananassae] gi|190625756|gb|EDV41280.1| GF10939 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 113/127 (88%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
I IKDNDSL+AMLAAE+QADLLILMSDV+GIY K PWE+GAK++ TYTS+ ++++FG+K
Sbjct: 228 IPIKDNDSLSAMLAAEVQADLLILMSDVDGIYNKPPWEDGAKLMHTYTSDDSNSIEFGKK 287
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 148
SKVGTGGMDSKV +ATWALDRGVSVVICNGMQ++AIK I+ GRK+GTFFT+A+ S P
Sbjct: 288 SKVGTGGMDSKVKAATWALDRGVSVVICNGMQEKAIKTIIGGRKVGTFFTEATESSNAVP 347
Query: 149 VEVLAEN 155
VEV+AEN
Sbjct: 348 VEVMAEN 354
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195592316|ref|XP_002085881.1| GD15014 [Drosophila simulans] gi|194197890|gb|EDX11466.1| GD15014 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 113/127 (88%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
I IKDNDSL+AMLAAE+QADLLILMSDV+GIY K PWE+GAK++ TYTS+ ++++FG+K
Sbjct: 228 IPIKDNDSLSAMLAAEVQADLLILMSDVDGIYNKPPWEDGAKLMHTYTSDDSNSIEFGKK 287
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 148
SKVGTGGMDSKV +ATWALDRGVSVVICNGMQ++AIK I+ GRK+GTFFT+A+ + P
Sbjct: 288 SKVGTGGMDSKVKAATWALDRGVSVVICNGMQEKAIKTIIGGRKVGTFFTEATESANAVP 347
Query: 149 VEVLAEN 155
VEV+AEN
Sbjct: 348 VEVMAEN 354
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383856461|ref|XP_003703727.1| PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 95/130 (73%), Positives = 116/130 (89%), Gaps = 2/130 (1%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
ISIKDNDSLAAMLAAEI+ADLLILMSDV+GIY + PW++GAKM+ T++S++RDT++FGQK
Sbjct: 236 ISIKDNDSLAAMLAAEIEADLLILMSDVDGIYNQPPWQDGAKMLHTFSSDLRDTIKFGQK 295
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 148
SKVGTGGMD+KVN+A WALDRGVSVVICNG Q++AIK I++GRKIGTFFT S + TP
Sbjct: 296 SKVGTGGMDAKVNAALWALDRGVSVVICNGTQEKAIKNILSGRKIGTFFTQTSEST--TP 353
Query: 149 VEVLAENVNL 158
VEV+AEN +
Sbjct: 354 VEVVAENARV 363
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195496667|ref|XP_002095790.1| GE22600 [Drosophila yakuba] gi|194181891|gb|EDW95502.1| GE22600 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 113/127 (88%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
I IKDNDSL+AMLAAE+QADLLILMSDV+GIY K PWE+GAK++ TYTS+ ++++FG+K
Sbjct: 228 IPIKDNDSLSAMLAAEVQADLLILMSDVDGIYNKPPWEDGAKLMHTYTSDDSNSIEFGKK 287
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 148
SKVGTGGMDSKV +ATWALDRGVSVVICNGMQ++AIK I+ GRK+GTFFT+A+ + P
Sbjct: 288 SKVGTGGMDSKVKAATWALDRGVSVVICNGMQEKAIKTIIGGRKVGTFFTEATESANAVP 347
Query: 149 VEVLAEN 155
VEV+AEN
Sbjct: 348 VEVMAEN 354
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195348707|ref|XP_002040889.1| GM22423 [Drosophila sechellia] gi|194122399|gb|EDW44442.1| GM22423 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 113/127 (88%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
I IKDNDSL+AMLAAE+QADLLILMSDV+GIY K PWE+GAK++ TYTS+ ++++FG+K
Sbjct: 228 IPIKDNDSLSAMLAAEVQADLLILMSDVDGIYNKPPWEDGAKLMHTYTSDDSNSIEFGKK 287
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 148
SKVGTGGMDSKV +ATWALDRGVSVVICNGMQ++AIK I+ GRK+GTFFT+A+ + P
Sbjct: 288 SKVGTGGMDSKVKAATWALDRGVSVVICNGMQEKAIKTIIGGRKVGTFFTEATESANAVP 347
Query: 149 VEVLAEN 155
VEV+AEN
Sbjct: 348 VEVMAEN 354
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|443693150|gb|ELT94581.1| hypothetical protein CAPTEDRAFT_165388 [Capitella teleta] | Back alignment and taxonomy information |
|---|
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 200/366 (54%), Gaps = 77/366 (21%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYT--SEMRDTVQF 85
+IS+KDNDSLAA +A EI ADLL+L+SDV+G+YT P +G++++ TY+ S R + F
Sbjct: 160 VISVKDNDSLAARIAGEINADLLMLLSDVDGLYTSPPGTDGSRLMHTYSPNSNGRSLI-F 218
Query: 86 GQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD------ 139
G+ S+VGTGGM+SKV +A +AL+R VSVVI NG AIK I++G+K+GTFFT+
Sbjct: 219 GEGSRVGTGGMESKVKAALFALERDVSVVIANGFANLAIKNIISGKKVGTFFTEHTESTT 278
Query: 140 ------ASAQSGGTPVEVLAENVNLKMEILVNSATWALDRGVSV---------------- 177
++A+ GG ++ LA + I+ A+ LDR +
Sbjct: 279 PVEQQASNAREGGRALQKLAPFQ--RAAIIEKLASLLLDRQAEILAANKLDLDEARRSGL 336
Query: 178 ----------------VICNGMQ---KEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAE 218
++ +G+Q K++ + + D + Q P+ VL
Sbjct: 337 AAPLISRLVLSEHKLKILADGLQQIAKDSYNNLGRVLRRTKLSEDINLQQISVPIGVLLV 396
Query: 219 IWKNETLNTTVPKKHA-----------KTSQCKYFTK----------MLPRYPLHS--QV 255
I+ E+ +P+ A K + Y + M P P + V
Sbjct: 397 IF--ESRPDCLPQVAALAISSGNGLLLKGGKEAYHSNKILHGLVQEAMEPHVPRTTIELV 454
Query: 256 STREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRK 315
S RE+I DL+ M+++IDLIIPRGSSDLV+SIQ++S+ IPVLGH+EG+CHVY+D++ +
Sbjct: 455 SKREDIGDLIQMDQYIDLIIPRGSSDLVKSIQEQSKGIPVLGHSEGVCHVYIDREVNPEM 514
Query: 316 AIKIAR 321
AIKI R
Sbjct: 515 AIKIVR 520
|
Source: Capitella teleta Species: Capitella teleta Genus: Capitella Family: Capitellidae Order: Capitellida Class: Polychaeta Phylum: Annelida Superkingdom: Eukaryota |
| >gi|21357643|ref|NP_649375.1| CG7470, isoform A [Drosophila melanogaster] gi|386771600|ref|NP_001246877.1| CG7470, isoform B [Drosophila melanogaster] gi|7296514|gb|AAF51799.1| CG7470, isoform A [Drosophila melanogaster] gi|17861556|gb|AAL39255.1| GH12632p [Drosophila melanogaster] gi|220946916|gb|ACL86001.1| CG7470-PA [synthetic construct] gi|383292069|gb|AFH04548.1| CG7470, isoform B [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 113/127 (88%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
I IKDNDSL+AMLAAE+QADLLILMSDV+GIY K PWE+GAK++ TYTS+ ++++FG+K
Sbjct: 228 IPIKDNDSLSAMLAAEVQADLLILMSDVDGIYNKPPWEDGAKLMHTYTSDDSNSIEFGKK 287
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 148
SKVGTGGMDSKV +ATWALDRGVSVVICNGMQ++AIK I+ GRK+GTFFT+A+ + P
Sbjct: 288 SKVGTGGMDSKVKAATWALDRGVSVVICNGMQEKAIKTIIGGRKVGTFFTEATESANAVP 347
Query: 149 VEVLAEN 155
VEV+AEN
Sbjct: 348 VEVMAEN 354
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195440440|ref|XP_002068050.1| GK10672 [Drosophila willistoni] gi|194164135|gb|EDW79036.1| GK10672 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 113/127 (88%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
I IKDNDSL+AMLAAE+QADLLILMSDV+GIY K PWE+GAK++ TYTS+ ++++FG+K
Sbjct: 228 IPIKDNDSLSAMLAAEVQADLLILMSDVDGIYNKPPWEDGAKLMHTYTSDDSNSIEFGKK 287
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 148
SKVGTGGMDSKV +ATWALDRGVSVVICNGMQ++AIK I+ GRK+GTFFT+A+ + P
Sbjct: 288 SKVGTGGMDSKVKAATWALDRGVSVVICNGMQEKAIKTIIGGRKVGTFFTEATESANSVP 347
Query: 149 VEVLAEN 155
VEV+AEN
Sbjct: 348 VEVMAEN 354
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 462 | ||||||
| FB|FBgn0037146 | 776 | CG7470 [Drosophila melanogaste | 0.274 | 0.163 | 0.724 | 2e-76 | |
| WB|WBGene00011938 | 802 | alh-13 [Caenorhabditis elegans | 0.378 | 0.218 | 0.410 | 6.4e-49 | |
| ZFIN|ZDB-GENE-030131-5602 | 784 | aldh18a1 "aldehyde dehydrogena | 0.274 | 0.161 | 0.473 | 4.3e-44 | |
| UNIPROTKB|E1C8Q3 | 808 | ALDH18A1 "Uncharacterized prot | 0.274 | 0.157 | 0.447 | 1.2e-40 | |
| UNIPROTKB|F1SC47 | 795 | ALDH18A1 "Uncharacterized prot | 0.270 | 0.157 | 0.465 | 3.9e-40 | |
| UNIPROTKB|Q2KJH7 | 795 | ALDH18A1 "Aldehyde dehydrogena | 0.270 | 0.157 | 0.465 | 1e-39 | |
| UNIPROTKB|P54886 | 795 | ALDH18A1 "Delta-1-pyrroline-5- | 0.270 | 0.157 | 0.465 | 1e-39 | |
| UNIPROTKB|Q5R4M8 | 795 | ALDH18A1 "Delta-1-pyrroline-5- | 0.270 | 0.157 | 0.465 | 1e-39 | |
| RGD|1311431 | 795 | Aldh18a1 "aldehyde dehydrogena | 0.270 | 0.157 | 0.465 | 1.3e-39 | |
| MGI|MGI:1888908 | 795 | Aldh18a1 "aldehyde dehydrogena | 0.270 | 0.157 | 0.465 | 1.3e-39 |
| FB|FBgn0037146 CG7470 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 2.0e-76, Sum P(2) = 2.0e-76
Identities = 92/127 (72%), Positives = 113/127 (88%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
I IKDNDSL+AMLAAE+QADLLILMSDV+GIY K PWE+GAK++ TYTS+ ++++FG+K
Sbjct: 228 IPIKDNDSLSAMLAAEVQADLLILMSDVDGIYNKPPWEDGAKLMHTYTSDDSNSIEFGKK 287
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 148
SKVGTGGMDSKV +ATWALDRGVSVVICNGMQ++AIK I+ GRK+GTFFT+A+ + P
Sbjct: 288 SKVGTGGMDSKVKAATWALDRGVSVVICNGMQEKAIKTIIGGRKVGTFFTEATESANAVP 347
Query: 149 VEVLAEN 155
VEV+AEN
Sbjct: 348 VEVMAEN 354
|
|
| WB|WBGene00011938 alh-13 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 6.4e-49, Sum P(2) = 6.4e-49
Identities = 78/190 (41%), Positives = 116/190 (61%)
Query: 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSK 90
I DNDSLAA L+AEI+A+LLI++S+VNG+YT P EG+++++TY V FG SK
Sbjct: 239 ISDNDSLAARLSAEIEAELLIILSNVNGVYTGPPDLEGSRLLYTYVPSENSGVTFGANSK 298
Query: 91 VGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVE 150
GTGGM+SKV + AL+ GV+ VI NG+ ++AI VAG+KIGT F + G P+E
Sbjct: 299 FGTGGMESKVTACVNALNNGVTTVITNGLAQDAITDAVAGKKIGTMFCNTKGYEG-PPIE 357
Query: 151 VLAE---NVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD-ASA 206
+AE + ++ L N A+ R ++ ++ + KE K I+ + TD A+A
Sbjct: 358 EVAEKCRDAGRQLAALSNKERGAMVRHLAALL---VDKE--KYIIEANQ-----TDLANA 407
Query: 207 QSGGTPVEVL 216
+S G ++L
Sbjct: 408 KSAGLDPQLL 417
|
|
| ZFIN|ZDB-GENE-030131-5602 aldh18a1 "aldehyde dehydrogenase 18 family, member A1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 4.3e-44, Sum P(2) = 4.3e-44
Identities = 62/131 (47%), Positives = 84/131 (64%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
+ISIKDNDSLAA LA E++ADLLI +SDV G+Y P + AK++ T+ + ++ +G
Sbjct: 220 VISIKDNDSLAARLAVEMRADLLIALSDVEGLYDSPPGSDDAKLLDTFYPGDQQSITYGT 279
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEA----IKQIVAGRKIGTFFTDASAQ 143
KS+VG GGM++KV +A WAL G SVVI NG + I IV G+K+GTFF++
Sbjct: 280 KSRVGIGGMEAKVKAALWALQGGTSVVIANGTHPKVTGHVITDIVEGKKVGTFFSEVKPA 339
Query: 144 SGGTPVEVLAE 154
G VE E
Sbjct: 340 GTGPTVEQQTE 350
|
|
| UNIPROTKB|E1C8Q3 ALDH18A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 60/134 (44%), Positives = 85/134 (63%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
+IS+KDNDSLAA LA E++ DLLI++SDV G++ P + AK+I + + +V FG
Sbjct: 245 VISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGT 304
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKE----AIKQIVAGRKIGTFFTDASAQ 143
KS+VG GGM++KV +A WAL G SVVI NG + I IV G+K+GTFF++
Sbjct: 305 KSRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKISGHVITDIVEGKKVGTFFSEVKPA 364
Query: 144 SGGTPVEVLAENVN 157
P+ V + +N
Sbjct: 365 E---PIVVQSGKIN 375
|
|
| UNIPROTKB|F1SC47 ALDH18A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 3.9e-40, Sum P(2) = 3.9e-40
Identities = 61/131 (46%), Positives = 84/131 (64%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
+IS+KDNDSLAA LA E++ DLLI++SDV G++ P + AK+I + + +V FG
Sbjct: 240 VISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGT 299
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEA----IKQIVAGRKIGTFFTDASAQ 143
KS+VG GGM++KV +A WAL G SVVI NG + I IV G+K+GTFF++ +
Sbjct: 300 KSRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSEV--K 357
Query: 144 SGGTPVEVLAE 154
G VE E
Sbjct: 358 PAGPTVEQQGE 368
|
|
| UNIPROTKB|Q2KJH7 ALDH18A1 "Aldehyde dehydrogenase 18 family, member A1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 61/131 (46%), Positives = 84/131 (64%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
+IS+KDNDSLAA LA E++ DLLI++SDV G++ P + AK+I + + +V FG
Sbjct: 240 VISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGT 299
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEA----IKQIVAGRKIGTFFTDASAQ 143
KS+VG GGM++KV +A WAL G SVVI NG + I IV G+K+GTFF++ +
Sbjct: 300 KSRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSEV--K 357
Query: 144 SGGTPVEVLAE 154
G VE E
Sbjct: 358 PAGPTVEQQGE 368
|
|
| UNIPROTKB|P54886 ALDH18A1 "Delta-1-pyrroline-5-carboxylate synthase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 61/131 (46%), Positives = 84/131 (64%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
+IS+KDNDSLAA LA E++ DLLI++SDV G++ P + AK+I + + +V FG
Sbjct: 240 VISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGT 299
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEA----IKQIVAGRKIGTFFTDASAQ 143
KS+VG GGM++KV +A WAL G SVVI NG + I IV G+K+GTFF++ +
Sbjct: 300 KSRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSEV--K 357
Query: 144 SGGTPVEVLAE 154
G VE E
Sbjct: 358 PAGPTVEQQGE 368
|
|
| UNIPROTKB|Q5R4M8 ALDH18A1 "Delta-1-pyrroline-5-carboxylate synthase" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 61/131 (46%), Positives = 84/131 (64%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
+IS+KDNDSLAA LA E++ DLLI++SDV G++ P + AK+I + + +V FG
Sbjct: 240 VISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGT 299
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEA----IKQIVAGRKIGTFFTDASAQ 143
KS+VG GGM++KV +A WAL G SVVI NG + I IV G+K+GTFF++ +
Sbjct: 300 KSRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSEV--K 357
Query: 144 SGGTPVEVLAE 154
G VE E
Sbjct: 358 PAGPTVEQQGE 368
|
|
| RGD|1311431 Aldh18a1 "aldehyde dehydrogenase 18 family, member A1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 61/131 (46%), Positives = 84/131 (64%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
+IS+KDNDSLAA LA E++ DLLI++SDV G++ P + AK+I + + +V FG
Sbjct: 240 VISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGT 299
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEA----IKQIVAGRKIGTFFTDASAQ 143
KS+VG GGM++KV +A WAL G SVVI NG + I IV G+K+GTFF++ +
Sbjct: 300 KSRVGLGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSEV--K 357
Query: 144 SGGTPVEVLAE 154
G VE E
Sbjct: 358 PAGPTVEQQGE 368
|
|
| MGI|MGI:1888908 Aldh18a1 "aldehyde dehydrogenase 18 family, member A1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
Identities = 61/131 (46%), Positives = 84/131 (64%)
Query: 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
+IS+KDNDSLAA LA E++ DLLI++SDV G++ P + AK+I + + +V FG
Sbjct: 240 VISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGT 299
Query: 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEA----IKQIVAGRKIGTFFTDASAQ 143
KS+VG GGM++KV +A WAL G SVVI NG + I IV G+K+GTFF++ +
Sbjct: 300 KSRVGLGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSEV--K 357
Query: 144 SGGTPVEVLAE 154
G VE E
Sbjct: 358 PAGPTVEQQGE 368
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.2.1.41 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.7.2 | 0.691 |
| 3rd Layer | 1.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 462 | |||
| cd04256 | 284 | cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate | 6e-53 | |
| cd04242 | 251 | cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-k | 5e-35 | |
| TIGR01092 | 715 | TIGR01092, P5CS, delta l-pyrroline-5-carboxylate s | 4e-29 | |
| PLN02418 | 718 | PLN02418, PLN02418, delta-1-pyrroline-5-carboxylat | 2e-28 | |
| cd07079 | 406 | cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phos | 4e-25 | |
| PRK00197 | 417 | PRK00197, proA, gamma-glutamyl phosphate reductase | 2e-23 | |
| PRK05429 | 372 | PRK05429, PRK05429, gamma-glutamyl kinase; Provisi | 6e-23 | |
| PRK12314 | 266 | PRK12314, PRK12314, gamma-glutamyl kinase; Provisi | 2e-22 | |
| COG0014 | 417 | COG0014, ProA, Gamma-glutamyl phosphate reductase | 1e-21 | |
| COG0263 | 369 | COG0263, ProB, Glutamate 5-kinase [Amino acid tran | 1e-21 | |
| TIGR01092 | 715 | TIGR01092, P5CS, delta l-pyrroline-5-carboxylate s | 9e-21 | |
| PLN02418 | 718 | PLN02418, PLN02418, delta-1-pyrroline-5-carboxylat | 2e-20 | |
| TIGR00407 | 398 | TIGR00407, proA, gamma-glutamyl phosphate reductas | 4e-20 | |
| TIGR01027 | 363 | TIGR01027, proB, glutamate 5-kinase | 9e-19 | |
| cd07079 | 406 | cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phos | 4e-18 | |
| PRK13402 | 368 | PRK13402, PRK13402, gamma-glutamyl kinase; Provisi | 2e-17 | |
| TIGR01092 | 715 | TIGR01092, P5CS, delta l-pyrroline-5-carboxylate s | 3e-16 | |
| COG0014 | 417 | COG0014, ProA, Gamma-glutamyl phosphate reductase | 3e-15 | |
| PRK00197 | 417 | PRK00197, proA, gamma-glutamyl phosphate reductase | 2e-14 | |
| PLN02418 | 718 | PLN02418, PLN02418, delta-1-pyrroline-5-carboxylat | 6e-14 | |
| cd04256 | 284 | cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate | 2e-13 | |
| pfam00696 | 230 | pfam00696, AA_kinase, Amino acid kinase family | 6e-13 | |
| cd07077 | 397 | cd07077, ALDH-like, NAD(P)+-dependent aldehyde deh | 8e-13 | |
| cd04241 | 252 | cd04241, AAK_FomA-like, AAK_FomA-like: This CD inc | 7e-11 | |
| COG1608 | 252 | COG1608, COG1608, Predicted archaeal kinase [Gener | 2e-10 | |
| TIGR00407 | 398 | TIGR00407, proA, gamma-glutamyl phosphate reductas | 6e-10 | |
| PTZ00489 | 264 | PTZ00489, PTZ00489, glutamate 5-kinase; Provisiona | 9e-10 | |
| cd02115 | 248 | cd02115, AAK, Amino Acid Kinases (AAK) superfamily | 1e-09 | |
| cd04238 | 256 | cd04238, AAK_NAGK-like, AAK_NAGK-like: N-Acetyl-L- | 3e-09 | |
| PRK14058 | 268 | PRK14058, PRK14058, acetylglutamate/acetylaminoadi | 5e-08 | |
| PRK00358 | 231 | PRK00358, pyrH, uridylate kinase; Provisional | 3e-07 | |
| COG0528 | 238 | COG0528, PyrH, Uridylate kinase [Nucleotide transp | 6e-07 | |
| cd04239 | 229 | cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase | 7e-07 | |
| cd04242 | 251 | cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-k | 1e-06 | |
| cd06534 | 367 | cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehyd | 1e-06 | |
| PRK00942 | 283 | PRK00942, PRK00942, acetylglutamate kinase; Provis | 2e-06 | |
| cd04251 | 257 | cd04251, AAK_NAGK-UC, AAK_NAGK-UC: N-Acetyl-L-glut | 2e-06 | |
| cd04250 | 279 | cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutam | 3e-06 | |
| COG0548 | 265 | COG0548, ArgB, Acetylglutamate kinase [Amino acid | 6e-06 | |
| TIGR02075 | 232 | TIGR02075, pyrH_bact, uridylate kinase | 1e-05 | |
| TIGR00761 | 231 | TIGR00761, argB, acetylglutamate kinase | 3e-05 | |
| TIGR01092 | 715 | TIGR01092, P5CS, delta l-pyrroline-5-carboxylate s | 8e-05 | |
| cd07077 | 397 | cd07077, ALDH-like, NAD(P)+-dependent aldehyde deh | 2e-04 | |
| cd04254 | 231 | cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t | 2e-04 | |
| COG0549 | 312 | COG0549, ArcC, Carbamate kinase [Amino acid transp | 6e-04 | |
| PRK12354 | 307 | PRK12354, PRK12354, carbamate kinase; Reviewed | 6e-04 | |
| PLN02512 | 309 | PLN02512, PLN02512, acetylglutamate kinase | 9e-04 | |
| cd04249 | 252 | cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glut | 0.002 | |
| cd04253 | 221 | cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k | 0.004 | |
| cd04235 | 308 | cd04235, AAK_CK, AAK_CK: Carbamate kinase (CK) cat | 0.004 |
| >gnl|CDD|239789 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 6e-53
Identities = 64/113 (56%), Positives = 85/113 (75%)
Query: 26 QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQF 85
Q +ISIKDNDSLAA LA E++ADLLIL+SDV+G+Y P + AK+I T+ + ++ F
Sbjct: 172 QGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITF 231
Query: 86 GQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
G KS+VGTGGM++KV +A WAL G SVVI NGM + I +I+ G+K+GTFFT
Sbjct: 232 GTKSRVGTGGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284
|
G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Length = 284 |
| >gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 5e-35
Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTY---TSEMRDTVQFGQK 88
DND L+A++A + ADLLIL+SDV+G+Y K P E AK+I T E+ G
Sbjct: 143 DNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAG-GSG 201
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
S VGTGGM +K+ +A A + G+ VVI NG + + + I+AG +GT F
Sbjct: 202 SSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLFL 251
|
G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR. Length = 251 |
| >gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-29
Identities = 50/108 (46%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSE-MRDTVQFGQKS 89
DNDSLAA+LA E++ADLLIL+SDV G+Y P ++ +K+I T+ E + + FG KS
Sbjct: 166 FWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGTKS 225
Query: 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
++G GGM +KV +A WA G V+I +G + I ++V G+K+GT F
Sbjct: 226 RLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLF 273
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region [Amino acid biosynthesis, Glutamate family]. Length = 715 |
| >gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-28
Identities = 52/106 (49%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEM-RDTVQFGQKSKV 91
DNDSLAA+LA E++ADLLIL+SDV G+YT P + +K+I TY E +D + FG+KS+V
Sbjct: 176 DNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQDEITFGEKSRV 235
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
G GGM +KV +A A G+ VVI +G + I++++ G ++GT F
Sbjct: 236 GRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLF 281
|
Length = 718 |
| >gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19 | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 4e-25
Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 258 REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAI 317
RE + +LL ++ +IDLIIPRG + L+R + + + IPV+ H +G CHVYVD+ AD+ A+
Sbjct: 179 REAVQELLKLDDYIDLIIPRGGAGLIRFVVENA-TIPVIKHGDGNCHVYVDESADLEMAV 237
Query: 318 KIAR 321
+I
Sbjct: 238 RIVV 241
|
Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1). Length = 406 |
| >gnl|CDD|234685 PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 2e-23
Identities = 27/64 (42%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 257 TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKA 316
R + +LL ++ ++D+IIPRG + L+R + + + +PV+ H +GICH+YVD+ AD+ KA
Sbjct: 184 DRAAVGELLKLDGYVDVIIPRGGAGLIRRVVENAT-VPVIEHGDGICHIYVDESADLDKA 242
Query: 317 IKIA 320
+KI
Sbjct: 243 LKIV 246
|
Length = 417 |
| >gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (249), Expect = 6e-23
Identities = 43/109 (39%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTY---TSEMRDTVQFGQK 88
DND+L+A++A ++ADLLIL++DV+G+YT P + AK+I T E+ G
Sbjct: 152 DNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAG-GAG 210
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
S +GTGGM +K+ +A A G+ VVI +G + + + +++AG +GT F
Sbjct: 211 SGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLF 259
|
Length = 372 |
| >gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 2e-22
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQF--GQKS 89
DND L+A++A ++ADLLI++SD++G+Y K P AK+ T + + G S
Sbjct: 155 DNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGS 214
Query: 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
K GTGGM +K+ +A + ++ G+ +V+ NG I + G IGT F
Sbjct: 215 KFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFA 263
|
Length = 266 |
| >gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 1e-21
Identities = 29/67 (43%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 254 QVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADI 313
+ + REE+ +LL ++ +IDL+IPRG + L+R + + + +PV+ H G CH+YVD+ AD+
Sbjct: 180 EDTDREEVLELLRLDGYIDLVIPRGGAGLIRRVVENAT-VPVIEHGVGNCHIYVDESADL 238
Query: 314 RKAIKIA 320
KA+KI
Sbjct: 239 DKALKII 245
|
Length = 417 |
| >gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 5/109 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMI---WTYTSEMRDTVQFGQK 88
DND+L+A++A + ADLL+L+SD++G+Y P AK+I T E+ G
Sbjct: 150 DNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAG-GSG 208
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
S++GTGGM +K+ +A A GV V+I +G + + I + G +GT F
Sbjct: 209 SELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLF 257
|
Length = 369 |
| >gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 9e-21
Identities = 41/67 (61%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
V++REEI DLL ++ IDL+IPRGS+ LV I+ KS IPVLGHA+GICHVYVDK A +
Sbjct: 461 VTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIK-KSTKIPVLGHADGICHVYVDKSASVD 519
Query: 315 KAIKIAR 321
A +I R
Sbjct: 520 MAKRIVR 526
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region [Amino acid biosynthesis, Glutamate family]. Length = 715 |
| >gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-20
Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
V++R+EI DLL ++ IDL+IPRGS+ LV I+ S IPVLGHA+GICHVYVDK AD+
Sbjct: 469 VTSRDEIPDLLKLDDVIDLVIPRGSNKLVSQIKA-STKIPVLGHADGICHVYVDKSADMD 527
Query: 315 KAIKIA 320
A +I
Sbjct: 528 MAKRIV 533
|
Length = 718 |
| >gnl|CDD|161862 TIGR00407, proA, gamma-glutamyl phosphate reductase | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 4e-20
Identities = 36/62 (58%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
Query: 258 REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAI 317
RE +S+LL ++++IDL+IPRG + LVR I+Q S IPVLGH +GICH+Y+D+ AD+ KAI
Sbjct: 173 RELVSELLDLDEYIDLLIPRGGNGLVRLIKQTST-IPVLGHGDGICHIYLDESADLIKAI 231
Query: 318 KI 319
K+
Sbjct: 232 KV 233
|
The related model TIGR01092 describes a full-length fusion protein delta l-pyrroline-5-carboxylate synthetase that includes a gamma-glutamyl phosphate reductase region as described by this model. Alternate name: glutamate-5-semialdehyde dehydrogenase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif [Amino acid biosynthesis, Glutamate family]. Length = 398 |
| >gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 9e-19
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD---TVQF 85
I DND+L+A++A + ADLL+L++DV+G+Y P + E+ D V
Sbjct: 140 IKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAG 199
Query: 86 GQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
S VGTGGM +K+ +A A GV V+I +G + E I + G +GT F
Sbjct: 200 DSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLF 251
|
Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family [Amino acid biosynthesis, Glutamate family]. Length = 363 |
| >gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19 | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 4e-18
Identities = 28/76 (36%), Positives = 53/76 (69%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
++ SR L L+ E + A+ +AD L + + ++L+AN+KDL+ A + G+++ LL RL LT
Sbjct: 8 KAASRALATLSTEQKNAALLAIADALEANRDEILEANAKDLAAAREAGLSEALLDRLLLT 67
Query: 431 PSKLKSLSTGLKQIAE 446
P ++++++ GL+Q+A
Sbjct: 68 PERIEAMAEGLRQVAA 83
|
Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1). Length = 406 |
| >gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 2e-17
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIW---TYTSEMRDTVQFGQK 88
DND+L+AM+AA AD LI++SD++G+Y + P AK+I +E+ G
Sbjct: 148 DNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAG-GAG 206
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
S VGTGGM +K+ +A A+ G+ I NG + Q++ G+ GT+FT
Sbjct: 207 SNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQNPGTYFT 256
|
Length = 368 |
| >gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 3e-16
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
R SR+LQ L+ E R + ++++AD L + ++L N KD++ A G A L++RLS++
Sbjct: 296 RESSRMLQALSSEQRKEILHDIADALEDNEDEILAENKKDVAAAQGAGYAASLVARLSMS 355
Query: 431 PSKLKSLSTGLKQIAESSHTNVGKFVK 457
PSK+ SL+ L+Q+A +G+ +K
Sbjct: 356 PSKISSLAISLRQLAAMEDP-IGRVLK 381
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region [Amino acid biosynthesis, Glutamate family]. Length = 715 |
| >gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-15
Identities = 30/76 (39%), Positives = 58/76 (76%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
++ SR L L+ E++ +A+ +AD L + +A++L AN+KDL+ A +NG+++ +L RL+LT
Sbjct: 13 KAASRKLATLSTEEKNRALLAMADALEAARAEILAANAKDLAAARENGLSEAMLDRLALT 72
Query: 431 PSKLKSLSTGLKQIAE 446
PS++++++ GL+Q+A
Sbjct: 73 PSRIEAMADGLRQVAA 88
|
Length = 417 |
| >gnl|CDD|234685 PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (184), Expect = 2e-14
Identities = 27/76 (35%), Positives = 50/76 (65%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
++ SR L L+ + +A+ +AD L + A++L AN+KDL+ A NG++ +L RL LT
Sbjct: 14 KAASRKLAQLSTAQKNRALLAIADALEANAAEILAANAKDLAAARANGLSAAMLDRLLLT 73
Query: 431 PSKLKSLSTGLKQIAE 446
++++ ++ GL+Q+A
Sbjct: 74 EARIEGIAEGLRQVAA 89
|
Length = 417 |
| >gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 6e-14
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
R SR LQ L+ E+R K + ++AD L + + + N D++ A + G K L+SRL+L
Sbjct: 304 RESSRKLQALSSEERKKILLDVADALEANEELIKAENELDVAAAQEAGYEKSLVSRLTLK 363
Query: 431 PSKLKSLSTGLKQIAE 446
P K+ SL+ ++Q+A+
Sbjct: 364 PGKIASLAASIRQLAD 379
|
Length = 718 |
| >gnl|CDD|239789 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-13
Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 160 MEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 202
ME V +A WAL G SVVI NGM + I +I+ G+K+GTFFT
Sbjct: 242 MEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284
|
G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Length = 284 |
| >gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 6e-13
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 27 KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQ 84
+ +D+LAA+LA + AD LI+++DV+G+YT P + AK+I + E + +
Sbjct: 141 TTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKNPDAKLIPELSYDEAEELL- 199
Query: 85 FGQKSKVGTGGMDSKVNSATWALDRGV-SVVICN 117
+ TGGM K +A A RG V I N
Sbjct: 200 ---AAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230
|
This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230 |
| >gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 8e-13
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 259 EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIK 318
E +LLS K IDLI+ G D V + + S HIPV+G G V VD+ AD +A
Sbjct: 171 ELAEELLSHPK-IDLIVATGGRDAVDAAVKHSPHIPVIGFGAGNSPVVVDETADEERASG 229
Query: 319 IARSG 323
Sbjct: 230 SVHDS 234
|
The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group. Length = 397 |
| >gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 7e-11
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG-- 92
D + LA ++ + +I ++DV+G+Y K P AK+I + + S
Sbjct: 150 DDIVVELAKALKPERVIFLTDVDGVYDKPP--PDAKLIPEIDVGSLEDILAALGSAGTDV 207
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
TGGM K+ RG+ V I NG + E + + + G IGT
Sbjct: 208 TGGMAGKIEELLELARRGIEVYIFNGDKPENLYRALLGNFIGT 250
|
Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 252 |
| >gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQ 87
I D + LA E++ D +I ++DV+G+Y + P + A+++ SE+ V G
Sbjct: 144 YEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLL----SEIEGRVALGG 199
Query: 88 KSKVG-TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
TGG+ K+ + G V I NG + E I + + G +GT
Sbjct: 200 SGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRALRGENVGT 248
|
Length = 252 |
| >gnl|CDD|161862 TIGR00407, proA, gamma-glutamyl phosphate reductase | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 6e-10
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
+ + +L L+ ++ A+ +AD L ++ +L AN+KD++ A +NG+A LL RL LT
Sbjct: 2 KQAANILAQLSTAEKNDALSKIADGLEAQAPAILAANAKDIAVAKENGLADALLDRLLLT 61
Query: 431 PSKLKSLSTGLKQIAE 446
+LK ++ G+K + E
Sbjct: 62 EGRLKGIADGVKDVIE 77
|
The related model TIGR01092 describes a full-length fusion protein delta l-pyrroline-5-carboxylate synthetase that includes a gamma-glutamyl phosphate reductase region as described by this model. Alternate name: glutamate-5-semialdehyde dehydrogenase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif [Amino acid biosynthesis, Glutamate family]. Length = 398 |
| >gnl|CDD|240438 PTZ00489, PTZ00489, glutamate 5-kinase; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 9e-10
Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT---VQFGQKS 89
DND L+A++A +ADLL+++SD++G YT+ P I + E+ + +
Sbjct: 148 DNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNN 207
Query: 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAG--RKIGTFF 137
+ TGG+ +K+ +A + L+RG + + +G E + + G +IGT F
Sbjct: 208 RFATGGIVTKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLF 257
|
Length = 264 |
| >gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMI-WTYTSEMRDTVQFGQKSK 90
+DS AA+LAA ++AD L++++DV+G+YT P + AK++ E +
Sbjct: 151 GSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYA----- 205
Query: 91 VGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
G M K +A A G+ V I N + + GT
Sbjct: 206 ---GAMVLKPKAADPAARAGIPVRIANT-ENPGALALFTPDGGGTLI 248
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248 |
| >gnl|CDD|239771 cd04238, AAK_NAGK-like, AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 3e-09
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEM-RDTVQFGQKSKVGT 93
D+ A +AA ++A+ LIL++DV G+ + G+ + SE+ + + V +
Sbjct: 160 DTAAGAIAAALKAEKLILLTDVPGVLD----DPGSLI-----SELTPKEAEELIEDGVIS 210
Query: 94 GGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRK-IGT 135
GGM KV +A AL+ GV V I +G ++ + + IGT
Sbjct: 211 GGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLELFTDEGIGT 254
|
Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 256 |
| >gnl|CDD|237599 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-08
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D AA +A ++A+ L+L+SDV G+ P E +I T E + + SK
Sbjct: 169 DGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDE--GSLIERITPE-----EAEELSKAA 221
Query: 93 TGGMDSKVNSATWALDRGVS-VVICNGMQKEAIKQIVAGRKIGT 135
GGM KV A A++ GV V+I + + I +AG GT
Sbjct: 222 GGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGE--GT 263
|
Length = 268 |
| >gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 3e-07
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSKVG 92
D+ AA+ A EI AD+L+ ++V+G+Y P + AK T E+ + + KV
Sbjct: 137 DTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLE-----KGLKV- 190
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD+ + + A D + +++ N + +K++V G IGT
Sbjct: 191 ---MDA--TAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGT 228
|
Length = 231 |
| >gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 35 DSLAAMLAAEIQAD-LLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSKV 91
D+ AA+ A EI+AD LL + V+G+Y P + AK T T E+ KV
Sbjct: 142 DTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLK-----IGLKV 196
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD + + A D G+ +++ N + +K+ + G ++GT
Sbjct: 197 ----MDP--TAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGT 234
|
Length = 238 |
| >gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 7e-07
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEE-GAKMIWTYTSEMRDTVQFGQKSKVGT 93
D+ AA+ A EI AD+L+ ++V+G+Y P + AK D + + + K G
Sbjct: 135 DTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKY--------DRISYDELLKKGL 186
Query: 94 GGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD+ + T + +++ NG++ + + + G +GT
Sbjct: 187 KVMDAT--ALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGT 226
|
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229 |
| >gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 1e-06
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 164 VNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 202
+ +A A + G+ VVI NG + + + I+AG +GT F
Sbjct: 213 LKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLFL 251
|
G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR. Length = 251 |
| >gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase superfamily | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 259 EEISDLLSMEKHIDLIIPRGSSDLVRSIQQ--KSQHIPVLGHAEGICHVYVDKDADIRKA 316
+E+ L +D I GS+ + ++I + PV G V VD+DAD+ A
Sbjct: 160 DEVGAALLSHPRVDKISFTGSTAVGKAIMKAAAENLKPVTLELGGKSPVIVDEDADLDAA 219
Query: 317 IKIARSGS 324
++ A G+
Sbjct: 220 VEGAVFGA 227
|
The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer to the cofactor and formation of a thioacylenzyme intermediate. Hydrolysis of the thioacylenzyme and release of the carboxylic acid product occurs, and in most cases, the reduced cofactor dissociates from the enzyme. The evolutionary phylogenetic tree of ALDHs appears to have an initial bifurcation between what has been characterized as the classical aldehyde dehydrogenases, the ALDH family (ALDH) and extended family members or aldehyde dehydrogenase-like (ALDH-L) proteins. The ALDH proteins are represented by enzymes which share a number of highly conserved residues necessary for catalysis and cofactor binding and they include such proteins as retinal dehydrogenase, 10-formyltetrahydrofolate dehydrogenase, non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase, delta(1)-pyrroline-5-carboxylate dehydrogenases, alpha-ketoglutaric semialdehyde dehydrogenase, alpha-aminoadipic semialdehyde dehydrogenase, coniferyl aldehyde dehydrogenase and succinate-semialdehyde dehydrogenase. Included in this larger group are all human, Arabidopsis, Tortula, fungal, protozoan, and Drosophila ALDHs identified in families ALDH1 through ALDH22 with the exception of families ALDH18, ALDH19, and ALDH20 which are present in the ALDH-like group. The ALDH-like group is represented by such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group. Length = 367 |
| >gnl|CDD|234869 PRK00942, PRK00942, acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 2e-06
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR-DTVQFGQKSKVGT 93
D+ A +AA + A+ LIL++DV G+ ++I SE+ + + V T
Sbjct: 184 DTAAGAIAAALGAEKLILLTDVPGVLDDK-----GQLI----SELTASEAEELIEDGVIT 234
Query: 94 GGMDSKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGT 135
GGM KV +A A GV SV I +G A+ ++ IGT
Sbjct: 235 GGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGT 278
|
Length = 283 |
| >gnl|CDD|239784 cd04251, AAK_NAGK-UC, AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D AA +AA ++A+ LIL++DV G+Y +G + S+ ++
Sbjct: 165 DGDRAAAAIAAALKAERLILLTDVEGLYL-----DGRVIERITVSDAESLLEKAG----- 214
Query: 93 TGGMDSKVNSATWALDRGVS-VVICNGMQKEAIKQIVAG 130
GGM K+ +A A++ GV VVI + I + G
Sbjct: 215 -GGMKRKLLAAAEAVEGGVREVVIGDARADSPISSALNG 252
|
This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK). Length = 257 |
| >gnl|CDD|239783 cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR-DTVQFGQKSKVGT 93
D+ A +AA ++A+ LIL++DV G+ + SE+ + + +
Sbjct: 180 DTAAGAIAAALKAEKLILLTDVAGVLDDPNDPG------SLISEISLKEAEELIADGIIS 233
Query: 94 GGMDSKVNSATWALDRGV-SVVICNG 118
GGM KV + AL+ GV + I +G
Sbjct: 234 GGMIPKVEACIEALEGGVKAAHIIDG 259
|
In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino Acid Kinase Superfamily (AAK). Length = 279 |
| >gnl|CDD|223622 COG0548, ArgB, Acetylglutamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTG 94
D+ A LAA ++A+ LIL++DV G+ +I +E + + + + TG
Sbjct: 165 DTAAGALAAALKAEKLILLTDVPGVLDDKG---DPSLISELDAEEAEEL---IEQGIITG 218
Query: 95 GMDSKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGT 135
GM KV +A AL+ GV V I +G ++ ++ IGT
Sbjct: 219 GMIPKVEAALEALESGVRRVHIISGRVPHSLLLELFTRDGIGT 261
|
Length = 265 |
| >gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVGT 93
D+ AA+ A EI AD+++ ++V+G+YT P + + AK DT+ + + K
Sbjct: 138 DTAAALRAIEINADVILKGTNVDGVYTADPKKNKDAKKY--------DTITYNEALKKNL 189
Query: 94 GGMDSKVNSA-TWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD +A A D + +V+ N + A+K+++ G+ IGT
Sbjct: 190 KVMDL---TAFALARDNNLPIVVFNIDKPGALKKVILGKGIGT 229
|
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232 |
| >gnl|CDD|233118 TIGR00761, argB, acetylglutamate kinase | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 8 LCEQHFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEE 67
L + ++ + L + + +++ + D+ A LAA + A+ L+L++DV GI +
Sbjct: 131 LLKAGYIPVISSLALTAEGQALNV-NADTAAGALAAALGAEKLVLLTDVPGILN----GD 185
Query: 68 GAKMIWTYTSEMR-DTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVI 115
G +I SE+ D ++ K + GGM KVN+A AL GV V
Sbjct: 186 GQSLI----SEIPLDEIEQLIKQGIIKGGMIPKVNAALEALRGGVRSVH 230
|
This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model [Amino acid biosynthesis, Glutamate family]. Length = 231 |
| >gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 8e-05
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 160 MEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
M V +A WA G V+I +G + I ++V G+K+GT F
Sbjct: 232 MTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLF 273
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region [Amino acid biosynthesis, Glutamate family]. Length = 715 |
| >gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
++ R L + E R I +A+ L + L + ++ +A ++ + +
Sbjct: 4 KNAQRTLAVNHDEQRDLIINAIANALYDTRQRLASEAVSERGAYIRSLIA-NWIAMMGCS 62
Query: 431 PSKLKSLSTGLKQIAES 447
SKL + I S
Sbjct: 63 ESKLYKNIDTERGITAS 79
|
The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group. Length = 397 |
| >gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEE-GAKMIWTYTSEMRDTVQFGQKSKVGT 93
D+ AA+ A EI AD+++ + V+G+Y P + AK D + + + G
Sbjct: 137 DTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRY--------DHLTYDEVLSKGL 188
Query: 94 GGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD+ + T D + +V+ N + + + V G +GT
Sbjct: 189 KVMDA--TAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGT 228
|
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231 |
| >gnl|CDD|223623 COG0549, ArcC, Carbamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D +A+LA +I ADLLI+++DV+ +Y + EM + GQ +
Sbjct: 212 DKDLASALLAEQIDADLLIILTDVDAVYVNFGKPNQQALDRVTVDEMEKYLAEGQFAA-- 269
Query: 93 TGGMDSKVNSA 103
G M KV +A
Sbjct: 270 -GSMGPKVEAA 279
|
Length = 312 |
| >gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIY 60
D D AA+LA ++ ADLL++++DV+ +Y
Sbjct: 204 DKDLAAALLAEQLDADLLLILTDVDAVY 231
|
Length = 307 |
| >gnl|CDD|178128 PLN02512, PLN02512, acetylglutamate kinase | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 9e-04
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTG 94
D+ A +AA + A+ LIL++DV G+ + G+ + +R + G G
Sbjct: 208 DTAAGEIAAALGAEKLILLTDVAGVLEDKD-DPGSLVKELDIKGVRKLIADG----KIAG 262
Query: 95 GMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFT 138
GM KV +L +GV + I +G + + +I+ GT T
Sbjct: 263 GMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT 308
|
Length = 309 |
| >gnl|CDD|239782 cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQ--KSKVG 92
D A +A + ADL +L+SDV+G+ A SE+ + Q + + V
Sbjct: 158 DQAATAIAQLLNADL-VLLSDVSGVLD-------ADK--QLISEL-NAKQAAELIEQGVI 206
Query: 93 TGGMDSKVNSATWA---LDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
T GM KVN+A A L RG+ I + E + ++AG +GT
Sbjct: 207 TDGMIVKVNAALDAAQSLRRGID--IASWQYPEQLTALLAGEPVGT 250
|
There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). Length = 252 |
| >gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSKVG 92
D++AA+LA + ADLLI ++V+G+Y+K P + AK + E+ D V KS
Sbjct: 118 DAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIV---GKSSWK 174
Query: 93 TGG---MDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
G D +A G+ ++ +G E +++ + G +GT
Sbjct: 175 AGSNEPFD--PLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTIIE 221
|
The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 221 |
| >gnl|CDD|239768 cd04235, AAK_CK, AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.004
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYT--KAPWEEGAKMIWTYTSEMRDTVQFGQKSK 90
D D +A+LA EI ADLL++++DV+ +Y P ++ + + E+ ++ GQ +
Sbjct: 209 DKDLASALLAEEINADLLVILTDVDNVYINFGKPNQKALEQV--TVEELEKYIEEGQFAP 266
Query: 91 VGTGGMDSKVNSA-TWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
G M KV +A + G +I + E + + G+ GT
Sbjct: 267 ---GSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGKA-GT 305
|
Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK). Length = 308 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 462 | |||
| COG0014 | 417 | ProA Gamma-glutamyl phosphate reductase [Amino aci | 100.0 | |
| KOG4165|consensus | 433 | 100.0 | ||
| TIGR01092 | 715 | P5CS delta l-pyrroline-5-carboxylate synthetase. T | 100.0 | |
| PLN02418 | 718 | delta-1-pyrroline-5-carboxylate synthase | 100.0 | |
| COG0263 | 369 | ProB Glutamate 5-kinase [Amino acid transport and | 99.97 | |
| PRK13402 | 368 | gamma-glutamyl kinase; Provisional | 99.94 | |
| TIGR01027 | 363 | proB glutamate 5-kinase. Bacterial ProB proteins h | 99.92 | |
| PRK05429 | 372 | gamma-glutamyl kinase; Provisional | 99.92 | |
| cd04256 | 284 | AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase | 99.88 | |
| KOG1154|consensus | 285 | 99.88 | ||
| PTZ00489 | 264 | glutamate 5-kinase; Provisional | 99.88 | |
| PRK12314 | 266 | gamma-glutamyl kinase; Provisional | 99.88 | |
| TIGR02518 | 488 | EutH_ACDH acetaldehyde dehydrogenase (acetylating) | 99.87 | |
| cd04242 | 251 | AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K | 99.86 | |
| COG0014 | 417 | ProA Gamma-glutamyl phosphate reductase [Amino aci | 99.85 | |
| cd04241 | 252 | AAK_FomA-like AAK_FomA-like: This CD includes a fo | 99.83 | |
| KOG4165|consensus | 433 | 99.76 | ||
| TIGR02076 | 221 | pyrH_arch uridylate kinase, putative. This family | 99.74 | |
| PRK14556 | 249 | pyrH uridylate kinase; Provisional | 99.74 | |
| PRK00358 | 231 | pyrH uridylate kinase; Provisional | 99.74 | |
| cd04253 | 221 | AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP | 99.74 | |
| PRK14558 | 231 | pyrH uridylate kinase; Provisional | 99.73 | |
| cd04250 | 279 | AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase | 99.73 | |
| PRK14058 | 268 | acetylglutamate/acetylaminoadipate kinase; Provisi | 99.73 | |
| PRK00942 | 283 | acetylglutamate kinase; Provisional | 99.72 | |
| CHL00202 | 284 | argB acetylglutamate kinase; Provisional | 99.71 | |
| PRK12353 | 314 | putative amino acid kinase; Reviewed | 99.71 | |
| cd04239 | 229 | AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik | 99.71 | |
| cd02115 | 248 | AAK Amino Acid Kinases (AAK) superfamily, catalyti | 99.71 | |
| TIGR00746 | 310 | arcC carbamate kinase. The seed alignment for this | 99.71 | |
| cd04238 | 256 | AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate | 99.7 | |
| COG1608 | 252 | Predicted archaeal kinase [General function predic | 99.7 | |
| PRK14557 | 247 | pyrH uridylate kinase; Provisional | 99.69 | |
| cd04255 | 262 | AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th | 99.68 | |
| PLN02512 | 309 | acetylglutamate kinase | 99.68 | |
| COG0528 | 238 | PyrH Uridylate kinase [Nucleotide transport and me | 99.67 | |
| PRK12686 | 312 | carbamate kinase; Reviewed | 99.67 | |
| cd04249 | 252 | AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina | 99.67 | |
| TIGR02075 | 233 | pyrH_bact uridylate kinase. This protein, also cal | 99.66 | |
| cd04254 | 231 | AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi | 99.65 | |
| cd04235 | 308 | AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot | 99.63 | |
| PRK12454 | 313 | carbamate kinase-like carbamoyl phosphate syntheta | 99.61 | |
| COG0548 | 265 | ArgB Acetylglutamate kinase [Amino acid transport | 99.61 | |
| PRK12354 | 307 | carbamate kinase; Reviewed | 99.6 | |
| PRK13805 | 862 | bifunctional acetaldehyde-CoA/alcohol dehydrogenas | 99.59 | |
| PRK05279 | 441 | N-acetylglutamate synthase; Validated | 99.58 | |
| cd04246 | 239 | AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina | 99.57 | |
| cd04251 | 257 | AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina | 99.57 | |
| cd04237 | 280 | AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) | 99.57 | |
| TIGR00407 | 398 | proA gamma-glutamyl phosphate reductase. The prosi | 99.57 | |
| cd04261 | 239 | AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina | 99.56 | |
| PRK12352 | 316 | putative carbamate kinase; Reviewed | 99.56 | |
| cd04234 | 227 | AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK) | 99.54 | |
| PF00696 | 242 | AA_kinase: Amino acid kinase family Match to Gluta | 99.53 | |
| PRK09411 | 297 | carbamate kinase; Reviewed | 99.52 | |
| TIGR01890 | 429 | N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi | 99.46 | |
| TIGR00761 | 231 | argB acetylglutamate kinase. This model describes | 99.45 | |
| cd04252 | 248 | AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam | 99.45 | |
| cd04259 | 295 | AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super | 99.44 | |
| cd04260 | 244 | AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase | 99.43 | |
| PRK05925 | 440 | aspartate kinase; Provisional | 99.43 | |
| cd07079 | 406 | ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate redu | 99.41 | |
| cd04236 | 271 | AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA | 99.38 | |
| cd04244 | 298 | AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina | 99.38 | |
| PRK08841 | 392 | aspartate kinase; Validated | 99.38 | |
| PRK00197 | 417 | proA gamma-glutamyl phosphate reductase; Provision | 99.38 | |
| cd04243 | 293 | AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina | 99.37 | |
| TIGR02078 | 327 | AspKin_pair Pyrococcus aspartate kinase subunit, p | 99.37 | |
| cd04240 | 203 | AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin | 99.36 | |
| cd04257 | 294 | AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa | 99.34 | |
| PRK15398 | 465 | aldehyde dehydrogenase EutE; Provisional | 99.33 | |
| PRK07431 | 587 | aspartate kinase; Provisional | 99.33 | |
| PRK06635 | 404 | aspartate kinase; Reviewed | 99.33 | |
| cd04258 | 292 | AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki | 99.33 | |
| cd07121 | 429 | ALDH_EutE Ethanolamine utilization protein EutE-li | 99.33 | |
| TIGR00656 | 401 | asp_kin_monofn aspartate kinase, monofunctional cl | 99.32 | |
| cd07077 | 397 | ALDH-like NAD(P)+-dependent aldehyde dehydrogenase | 99.31 | |
| PRK06291 | 465 | aspartate kinase; Provisional | 99.31 | |
| cd04245 | 288 | AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki | 99.31 | |
| cd04247 | 306 | AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa | 99.3 | |
| PRK04531 | 398 | acetylglutamate kinase; Provisional | 99.3 | |
| cd07086 | 478 | ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadip | 99.29 | |
| TIGR00657 | 441 | asp_kinases aspartate kinase. The Lys-sensitive en | 99.28 | |
| cd07090 | 457 | ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobuty | 99.27 | |
| PRK08210 | 403 | aspartate kinase I; Reviewed | 99.26 | |
| cd07138 | 466 | ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric ac | 99.26 | |
| PRK08373 | 341 | aspartate kinase; Validated | 99.26 | |
| PRK09084 | 448 | aspartate kinase III; Validated | 99.25 | |
| TIGR01804 | 467 | BADH glycine betaine aldehyde dehydrogenase. Betai | 99.23 | |
| cd07141 | 481 | ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydro | 99.22 | |
| COG0527 | 447 | LysC Aspartokinases [Amino acid transport and meta | 99.22 | |
| cd07135 | 436 | ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde | 99.2 | |
| cd07131 | 478 | ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuen | 99.19 | |
| PRK08961 | 861 | bifunctional aspartate kinase/diaminopimelate deca | 99.19 | |
| PRK09034 | 454 | aspartate kinase; Reviewed | 99.18 | |
| TIGR02299 | 488 | HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyd | 99.17 | |
| cd07108 | 457 | ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent a | 99.15 | |
| cd07125 | 518 | ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate d | 99.15 | |
| cd07088 | 468 | ALDH_LactADH-AldA Escherichia coli lactaldehyde de | 99.15 | |
| cd07109 | 454 | ALDH_AAS00426 Uncharacterized Saccharopolyspora sp | 99.15 | |
| cd07093 | 455 | ALDH_F8_HMSADH Human aldehyde dehydrogenase family | 99.15 | |
| cd07101 | 454 | ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succi | 99.15 | |
| COG0549 | 312 | ArcC Carbamate kinase [Amino acid transport and me | 99.14 | |
| PLN00412 | 496 | NADP-dependent glyceraldehyde-3-phosphate dehydrog | 99.13 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 99.13 | |
| cd07144 | 484 | ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyd | 99.12 | |
| PLN02825 | 515 | amino-acid N-acetyltransferase | 99.12 | |
| PRK13252 | 488 | betaine aldehyde dehydrogenase; Provisional | 99.12 | |
| TIGR01722 | 477 | MMSDH methylmalonic acid semialdehyde dehydrogenas | 99.12 | |
| TIGR03216 | 481 | OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehy | 99.12 | |
| cd07085 | 478 | ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrog | 99.11 | |
| cd07106 | 446 | ALDH_AldA-AAD23400 Streptomyces aureofaciens putat | 99.11 | |
| cd07114 | 457 | ALDH_DhaS Uncharacterized Candidatus pelagibacter | 99.1 | |
| cd07130 | 474 | ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic se | 99.1 | |
| cd07143 | 481 | ALDH_AldA_AN0554 Aspergillus nidulans aldehyde deh | 99.09 | |
| cd07147 | 452 | ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1 | 99.07 | |
| PLN02551 | 521 | aspartokinase | 99.07 | |
| cd07091 | 476 | ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families | 99.06 | |
| PTZ00381 | 493 | aldehyde dehydrogenase family protein; Provisional | 99.06 | |
| TIGR03240 | 484 | arg_catab_astD succinylglutamic semialdehyde dehyd | 99.06 | |
| TIGR01780 | 448 | SSADH succinate-semialdehyde dehydrogenase. SSADH | 99.06 | |
| cd07132 | 443 | ALDH_F3AB Aldehyde dehydrogenase family 3 members | 99.03 | |
| cd07150 | 451 | ALDH_VaniDH_like Pseudomonas putida vanillin dehyd | 99.03 | |
| cd06534 | 367 | ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase s | 99.01 | |
| cd07111 | 480 | ALDH_F16 Aldehyde dehydrogenase family 16A1-like. | 99.01 | |
| cd07098 | 465 | ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and | 99.01 | |
| cd07092 | 450 | ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent g | 99.0 | |
| cd07099 | 453 | ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-di | 98.99 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 98.99 | |
| cd07148 | 455 | ALDH_RL0313 Uncharacterized ALDH ( RL0313) with si | 98.98 | |
| TIGR01238 | 500 | D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehy | 98.98 | |
| cd07115 | 453 | ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxy | 98.98 | |
| cd07110 | 456 | ALDH_F10_BADH Arabidopsis betaine aldehyde dehydro | 98.97 | |
| PRK09407 | 524 | gabD2 succinic semialdehyde dehydrogenase; Reviewe | 98.97 | |
| cd07142 | 476 | ALDH_F2BC Arabidosis aldehyde dehydrogenase family | 98.97 | |
| cd07078 | 432 | ALDH NAD(P)+ dependent aldehyde dehydrogenase fami | 98.95 | |
| cd07122 | 436 | ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydr | 98.93 | |
| cd07119 | 482 | ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent be | 98.92 | |
| cd07140 | 486 | ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydroge | 98.92 | |
| cd07103 | 451 | ALDH_F5_SSADH_GabD Mitochondrial succinate-semiald | 98.91 | |
| cd07104 | 431 | ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependen | 98.91 | |
| cd07137 | 432 | ALDH_F3FHI Plant aldehyde dehydrogenase family 3 m | 98.91 | |
| cd07081 | 439 | ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldeh | 98.91 | |
| PLN02466 | 538 | aldehyde dehydrogenase family 2 member | 98.9 | |
| cd07151 | 465 | ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyd | 98.89 | |
| cd04248 | 304 | AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S | 98.88 | |
| cd07149 | 453 | ALDH_y4uC Uncharacterized ALDH (y4uC) with similar | 98.88 | |
| cd07094 | 453 | ALDH_F21_LactADH-like ALDH subfamily: NAD+-depende | 98.88 | |
| PRK09181 | 475 | aspartate kinase; Validated | 98.88 | |
| COG2054 | 212 | Uncharacterized archaeal kinase related to asparto | 98.86 | |
| PF00171 | 462 | Aldedh: Aldehyde dehydrogenase family; InterPro: I | 98.86 | |
| cd07105 | 432 | ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-l | 98.85 | |
| cd07102 | 452 | ALDH_EDX86601 Uncharacterized aldehyde dehydrogena | 98.83 | |
| cd07118 | 454 | ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydr | 98.82 | |
| PLN02315 | 508 | aldehyde dehydrogenase family 7 member | 98.82 | |
| cd07152 | 443 | ALDH_BenzADH NAD-dependent benzaldehyde dehydrogen | 98.81 | |
| cd07133 | 434 | ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-l | 98.81 | |
| cd07082 | 473 | ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylat | 98.8 | |
| PRK09406 | 457 | gabD1 succinic semialdehyde dehydrogenase; Reviewe | 98.78 | |
| cd07097 | 473 | ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent | 98.77 | |
| cd07107 | 456 | ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde | 98.76 | |
| PRK13473 | 475 | gamma-aminobutyraldehyde dehydrogenase; Provisiona | 98.75 | |
| cd07087 | 426 | ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl | 98.72 | |
| cd07145 | 456 | ALDH_LactADH_F420-Bios Methanocaldococcus jannasch | 98.71 | |
| cd07124 | 512 | ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxyl | 98.71 | |
| cd07083 | 500 | ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)- | 98.7 | |
| cd07139 | 471 | ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehy | 98.69 | |
| cd07120 | 455 | ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde deh | 98.67 | |
| TIGR03250 | 472 | PhnAcAld_DH putative phosphonoacetaldehyde dehydro | 98.66 | |
| PRK10090 | 409 | aldehyde dehydrogenase A; Provisional | 98.64 | |
| PRK09847 | 494 | gamma-glutamyl-gamma-aminobutyraldehyde dehydrogen | 98.63 | |
| PRK09457 | 487 | astD succinylglutamic semialdehyde dehydrogenase; | 98.62 | |
| cd07136 | 449 | ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydr | 98.62 | |
| PRK03137 | 514 | 1-pyrroline-5-carboxylate dehydrogenase; Provision | 98.62 | |
| PLN02278 | 498 | succinic semialdehyde dehydrogenase | 98.6 | |
| PLN02203 | 484 | aldehyde dehydrogenase | 98.59 | |
| PRK13968 | 462 | putative succinate semialdehyde dehydrogenase; Pro | 98.59 | |
| TIGR01237 | 511 | D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehy | 98.55 | |
| PLN02467 | 503 | betaine aldehyde dehydrogenase | 98.54 | |
| cd07100 | 429 | ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succi | 98.51 | |
| cd07113 | 477 | ALDH_PADH_NahF Escherichia coli NAD+-dependent phe | 98.51 | |
| cd07129 | 454 | ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydr | 98.5 | |
| cd07134 | 433 | ALDH_AlkH-like Pseudomonas putida Aldehyde dehydro | 98.5 | |
| cd07084 | 442 | ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent | 98.48 | |
| cd07095 | 431 | ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde | 98.46 | |
| cd07089 | 459 | ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric | 98.45 | |
| cd07559 | 480 | ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dep | 98.44 | |
| cd07146 | 451 | ALDH_PhpJ Streptomyces putative phosphonoformaldeh | 98.44 | |
| cd07117 | 475 | ALDH_StaphAldA1 Uncharacterized Staphylococcus aur | 98.4 | |
| cd07116 | 479 | ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependen | 98.4 | |
| cd07127 | 549 | ALDH_PAD-PaaZ Phenylacetic acid degradation protei | 98.4 | |
| PRK11809 | 1318 | putA trifunctional transcriptional regulator/proli | 98.36 | |
| PRK11905 | 1208 | bifunctional proline dehydrogenase/pyrroline-5-car | 98.35 | |
| TIGR02288 | 551 | PaaN_2 phenylacetic acid degradation protein paaN. | 98.32 | |
| TIGR01092 | 715 | P5CS delta l-pyrroline-5-carboxylate synthetase. T | 98.29 | |
| PLN02174 | 484 | aldehyde dehydrogenase family 3 member H1 | 98.23 | |
| cd07112 | 462 | ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent | 98.22 | |
| KOG0456|consensus | 559 | 98.16 | ||
| PLN02418 | 718 | delta-1-pyrroline-5-carboxylate synthase | 98.15 | |
| TIGR00407 | 398 | proA gamma-glutamyl phosphate reductase. The prosi | 98.15 | |
| PRK11904 | 1038 | bifunctional proline dehydrogenase/pyrroline-5-car | 98.14 | |
| cd07123 | 522 | ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate | 98.05 | |
| PLN02766 | 501 | coniferyl-aldehyde dehydrogenase | 97.9 | |
| PRK11241 | 482 | gabD succinate-semialdehyde dehydrogenase I; Provi | 97.89 | |
| PRK00197 | 417 | proA gamma-glutamyl phosphate reductase; Provision | 97.81 | |
| cd07079 | 406 | ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate redu | 97.73 | |
| TIGR03374 | 472 | ABALDH 1-pyrroline dehydrogenase. Members of this | 97.73 | |
| PLN02419 | 604 | methylmalonate-semialdehyde dehydrogenase [acylati | 97.54 | |
| COG1012 | 472 | PutA NAD-dependent aldehyde dehydrogenases [Energy | 97.43 | |
| KOG2456|consensus | 477 | 97.25 | ||
| TIGR01236 | 533 | D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehy | 97.18 | |
| cd07077 | 397 | ALDH-like NAD(P)+-dependent aldehyde dehydrogenase | 96.62 | |
| cd07126 | 489 | ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate de | 96.55 | |
| TIGR02518 | 488 | EutH_ACDH acetaldehyde dehydrogenase (acetylating) | 96.38 | |
| cd07080 | 422 | ALDH_Acyl-CoA-Red_LuxC Acyl-CoA reductase LuxC. Ac | 95.72 | |
| cd07135 | 436 | ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde | 95.03 | |
| TIGR02278 | 663 | PaaN-DH phenylacetic acid degradation protein paaN | 94.99 | |
| cd07128 | 513 | ALDH_MaoC-N N-terminal domain of the monoamine oxi | 94.72 | |
| cd07132 | 443 | ALDH_F3AB Aldehyde dehydrogenase family 3 members | 94.26 | |
| PRK11903 | 521 | aldehyde dehydrogenase; Provisional | 93.8 | |
| cd07129 | 454 | ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydr | 91.69 | |
| PTZ00381 | 493 | aldehyde dehydrogenase family protein; Provisional | 91.38 | |
| cd07137 | 432 | ALDH_F3FHI Plant aldehyde dehydrogenase family 3 m | 91.33 | |
| TIGR03216 | 481 | OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehy | 91.1 | |
| PRK11563 | 675 | bifunctional aldehyde dehydrogenase/enoyl-CoA hydr | 91.05 | |
| KOG2436|consensus | 520 | 90.59 | ||
| cd07133 | 434 | ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-l | 90.34 | |
| PLN02203 | 484 | aldehyde dehydrogenase | 89.82 | |
| cd07143 | 481 | ALDH_AldA_AN0554 Aspergillus nidulans aldehyde deh | 89.79 | |
| cd07090 | 457 | ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobuty | 89.5 | |
| cd07093 | 455 | ALDH_F8_HMSADH Human aldehyde dehydrogenase family | 89.39 | |
| cd07086 | 478 | ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadip | 89.26 | |
| cd07138 | 466 | ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric ac | 89.13 | |
| TIGR02299 | 488 | HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyd | 88.43 | |
| cd07152 | 443 | ALDH_BenzADH NAD-dependent benzaldehyde dehydrogen | 88.25 | |
| cd07108 | 457 | ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent a | 87.93 | |
| cd07098 | 465 | ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and | 87.66 | |
| cd07121 | 429 | ALDH_EutE Ethanolamine utilization protein EutE-li | 87.5 | |
| cd07101 | 454 | ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succi | 87.15 | |
| PRK13252 | 488 | betaine aldehyde dehydrogenase; Provisional | 86.47 | |
| cd07106 | 446 | ALDH_AldA-AAD23400 Streptomyces aureofaciens putat | 86.47 | |
| PLN00412 | 496 | NADP-dependent glyceraldehyde-3-phosphate dehydrog | 86.29 | |
| cd07102 | 452 | ALDH_EDX86601 Uncharacterized aldehyde dehydrogena | 86.15 | |
| cd07105 | 432 | ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-l | 85.99 | |
| cd07116 | 479 | ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependen | 85.9 | |
| KOG2450|consensus | 501 | 85.81 | ||
| cd07087 | 426 | ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl | 85.3 | |
| TIGR01804 | 467 | BADH glycine betaine aldehyde dehydrogenase. Betai | 85.1 | |
| cd07559 | 480 | ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dep | 84.88 | |
| cd07134 | 433 | ALDH_AlkH-like Pseudomonas putida Aldehyde dehydro | 84.77 | |
| PRK09407 | 524 | gabD2 succinic semialdehyde dehydrogenase; Reviewe | 84.56 | |
| cd07125 | 518 | ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate d | 83.93 | |
| cd07131 | 478 | ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuen | 83.5 | |
| cd07151 | 465 | ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyd | 83.5 | |
| cd07099 | 453 | ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-di | 83.41 | |
| cd07115 | 453 | ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxy | 83.33 | |
| cd07092 | 450 | ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent g | 83.31 | |
| cd07110 | 456 | ALDH_F10_BADH Arabidopsis betaine aldehyde dehydro | 82.79 | |
| cd07085 | 478 | ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrog | 82.55 | |
| cd07109 | 454 | ALDH_AAS00426 Uncharacterized Saccharopolyspora sp | 82.23 | |
| TIGR03240 | 484 | arg_catab_astD succinylglutamic semialdehyde dehyd | 81.92 | |
| PF00171 | 462 | Aldedh: Aldehyde dehydrogenase family; InterPro: I | 81.81 | |
| PRK15398 | 465 | aldehyde dehydrogenase EutE; Provisional | 81.4 | |
| cd07150 | 451 | ALDH_VaniDH_like Pseudomonas putida vanillin dehyd | 81.31 | |
| cd07104 | 431 | ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependen | 80.49 | |
| cd07082 | 473 | ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylat | 80.42 | |
| cd07078 | 432 | ALDH NAD(P)+ dependent aldehyde dehydrogenase fami | 80.41 |
| >COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=455.98 Aligned_cols=254 Identities=21% Similarity=0.305 Sum_probs=219.7
Q ss_pred cHHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------------------HHHHHhhc
Q psy11677 148 PVEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------------------IKQIVAGR 195 (462)
Q Consensus 148 ~~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~~~~ 195 (462)
.++.++++||+|++.|.. ||++|+.+.+.||+||.+|+++ |++|++|+
T Consensus 4 ~~~~~~~~Ak~A~~~La~~st~~Kn~aL~a~A~~L~~~~~~IL~AN~~Dl~~are~gl~~~m~DRL~L~~~Ri~~ma~gl 83 (417)
T COG0014 4 ELEELGKRAKAASRKLATLSTEEKNRALLAMADALEAARAEILAANAKDLAAARENGLSEAMLDRLALTPSRIEAMADGL 83 (417)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHcCCcHHHHHHHcCCHHHHHHHHHHH
Confidence 478899999999999888 9999999999999999999998 99999999
Q ss_pred cccccccccCCC-----------------CCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHH
Q psy11677 196 KIGTFFTDASAQ-----------------SGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKY 241 (462)
Q Consensus 196 ~i~t~~a~~~d~-----------------~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~ 241 (462)
+ +|+.|||| ++|||+|||||||||| ||||+| |||.||| ++
T Consensus 84 ~---~Va~L~DPvGev~~~~~~~nGL~i~~~rvPLGVigvIYEsR--PnVtvdaaaLclKsGNAvILRGGsea~~Sn-~a 157 (417)
T COG0014 84 R---QVAALPDPVGEVIDGWTLPNGLQIYRVRVPLGVIGVIYESR--PNVTVDAAALCLKSGNAVILRGGSEAIHSN-AA 157 (417)
T ss_pred H---HHhcCCCchHhhhccccCCCCCEEEEEEccceEEEEEEecC--CccHHHHHHHHHhcCCEEEEeCcHHHhhhH-HH
Confidence 9 99999997 4699999999999999 999999 9999999 99
Q ss_pred HH----hhcCCC----CeEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCC
Q psy11677 242 FT----KMLPRY----PLHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDA 311 (462)
Q Consensus 242 l~----~al~~~----~~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~a 311 (462)
|+ ++|+++ ++||+|+ +|+.+.+||++++||||||||||++||++|+++++ ||||+||.||||+|||++|
T Consensus 158 i~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~l~~yiD~iIPRGg~~Li~~v~~~a~-vPVi~~~~G~CHiyvd~~A 236 (417)
T COG0014 158 IVEVIQEALEKAGLPADAVQLIEDTDREEVLELLRLDGYIDLVIPRGGAGLIRRVVENAT-VPVIEHGVGNCHIYVDESA 236 (417)
T ss_pred HHHHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHhhcCceeEEEcCCcHHHHHHHHhCCc-CCEEecCcceEEEEecccC
Confidence 99 777777 8999999 59999999999999999999999999999999996 9999999999999999999
Q ss_pred CHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccccChhhHHHHHHh-HHHHHHHHHHHHHHHhc-----------
Q psy11677 312 DIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDVSGLPCLLLFIRL-GSLFISGTRSGSRVLQG----------- 379 (462)
Q Consensus 312 d~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ar~As~~L~~----------- 379 (462)
|++||++|++|||||||++ |||+|+++.+..++..|+|.|...++. |..|- .-.++...|..
T Consensus 237 Dld~A~~ii~nAKtqrPs~-----CNA~EtLLVh~~ia~~fLp~l~~~l~~~gvelr-~d~~~~~~~~~~~~~A~e~Dw~ 310 (417)
T COG0014 237 DLDKALKIIVNAKTQRPSV-----CNAAETLLVHRAIAKSFLPKLANALQEAGVELR-GDAEALALLPDAVKPATEEDWD 310 (417)
T ss_pred CHHHHHHHHHcccCCCCcc-----cchHHHHHcCHHHHHHhHHHHHHHHHhcCeEEE-cCHHHHHhccccCCCCchhhHH
Confidence 9999999999999999988 999999999999999999999877663 22221 11111111211
Q ss_pred ----------CCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHH
Q psy11677 380 ----------LNPEDRAKAIYNLADLLISKQADLLDANSKDLSDA 414 (462)
Q Consensus 380 ----------ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a 414 (462)
-.-+.-.+++.+|..-=..|.+-|+.+|..--+..
T Consensus 311 tEyLd~ilavkvVd~ld~AI~HIn~y~S~HsdaIiTe~~~~a~~F 355 (417)
T COG0014 311 TEYLDLILAVKVVDSLDEAIAHINTYGSGHSDAIITEDYANAERF 355 (417)
T ss_pred HHhhhheeEEEEeCCHHHHHHHHHHhCCCCCcceeeCCHHHHHHH
Confidence 11223456777777777788888888887765544
|
|
| >KOG4165|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-49 Score=389.12 Aligned_cols=249 Identities=32% Similarity=0.425 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------------------HHHHHhhcc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------------------IKQIVAGRK 196 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~~~~~ 196 (462)
.+++++.||.+++.|+. +|++|..+.+.|++||++|++. ++.|++|++
T Consensus 2 ~e~~a~~aR~a~r~LqaLs~e~R~~il~~iad~L~~~~~~I~~aN~~Dla~Ake~GL~~sll~RL~l~~~K~~sl~~g~~ 81 (433)
T KOG4165|consen 2 VEEMAENAREAGRILQALSNEDRADILHHIADLLVDNEKEILAANKKDLAEAKEAGLAESLLKRLDLSPGKISSLAAGLR 81 (433)
T ss_pred HHHHHHHHHHHhhHHHhcChhhHHHHHHHHHHHHHhhHHHHHhcchhhHHHHHhcCccHHHHHHhcCChHHHHHHHHHHH
Confidence 57899999999999988 9999999999999999999987 999999999
Q ss_pred ccccccccCCC-----------------CCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHH
Q psy11677 197 IGTFFTDASAQ-----------------SGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYF 242 (462)
Q Consensus 197 i~t~~a~~~d~-----------------~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l 242 (462)
+|++++|| +++||+||+.|||||| |+|+++ |||.||| ++|
T Consensus 82 ---~ia~~edpvGRVl~~~~ladgL~L~qvt~PiGvLLVIFESR--Pd~l~qiasLAi~SgN~llLKGGkEa~~Sn-~~L 155 (433)
T KOG4165|consen 82 ---QIAELEDPVGRVLKKTRLADGLELEQVTVPIGVLLVIFESR--PDCLPQIASLAIASGNGLLLKGGKEAAHSN-AAL 155 (433)
T ss_pred ---HHHhcccchhhheeeeeccCCceEEEeeccceEEEEEeccC--chHHHHHHHHHHhcCCeEeecCchhhhhhH-HHH
Confidence 99999985 4699999999999999 999888 9999999 999
Q ss_pred H----hhcCCC----CeEEeecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHH
Q psy11677 243 T----KMLPRY----PLHSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314 (462)
Q Consensus 243 ~----~al~~~----~~v~~v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~ 314 (462)
+ ++|..+ ++||+|++||+|.+||++++||||||||||+.||+.|+++++ |||+||++|+||+|||++||++
T Consensus 156 ~~~v~~al~~~~~~~~aV~LV~sREev~dLl~ld~~IDLvIPRGSs~LVr~Ik~~tk-IPVLGHA~GichvYvd~dad~~ 234 (433)
T KOG4165|consen 156 HKLVQEALGTHGGPGKAVQLVTSREEVSDLLKLDDYIDLVIPRGSSDLVRSIKDTTK-IPVLGHAEGICHVYVDKDADLD 234 (433)
T ss_pred HHHHHHHhhhccCchhhhhheecHHHHHHHhhhhhheeEEecCCcHHHHHHHhhccc-CcccccccceeEEEeccccCHH
Confidence 9 888877 799999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHHHHHHcccCCCCCCCCchhHHHHHHhhhccc-ccccChhhHHHH-HHhHHHHHHHHHHHHHHHhcCCHHHH-------
Q psy11677 315 KAIKIARSGSRVLQGLNPEDRAKAIYNLADQGE-MDVSGLPCLLLF-IRLGSLFISGTRSGSRVLQGLNPEDR------- 385 (462)
Q Consensus 315 ~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~Ar~As~~L~~ls~~~r------- 385 (462)
||.+|+.|+||.||++ |||+|.++.+.- ..-.+.+.++.+ .+.|+-+ ..-...+..|.-..++.+
T Consensus 235 kA~riv~DaK~dYPAa-----CNAmETLLIh~dl~~~~~~~~l~~~l~~~gVtl-~agpkl~~~l~~~p~e~~s~~~Ey~ 308 (433)
T KOG4165|consen 235 KAKRIVRDAKCDYPAA-----CNAMETLLIHKDLEQSPFFDDLINMLKEEGVTL-HAGPKLAALLKFSPPEAKSFNTEYG 308 (433)
T ss_pred HHHHHHhcccCCCchh-----hhhHHHHhccHhhhhcchHHHHHHHHHhcCeEE-ecChhHHhhcCcCCchhhhhhhhhc
Confidence 9999999999999998 999999998874 333344444433 3333322 222233333333223322
Q ss_pred ------------HHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 386 ------------AKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 386 ------------n~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.+|-.-=..+.+-|+.+|..-
T Consensus 309 ~l~~~ievV~~v~~Ai~HI~~hgS~HTD~IvTe~~~~ 345 (433)
T KOG4165|consen 309 SLECTIEVVDSVQSAIDHIHTHGSSHTDCIVTENEAT 345 (433)
T ss_pred chheeeeecccHHHHHHHHHhcCCcccceEEecCHHH
Confidence 3455555555556777777777654
|
|
| >TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=362.46 Aligned_cols=304 Identities=35% Similarity=0.559 Sum_probs=259.9
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHH-hhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD-TVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~-~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
|+|||++|+++|..++||+|+++|||||||++||++|++++|++++..+.. .+..+..+.+++|||.+|++++..+.++
T Consensus 166 ~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~ 245 (715)
T TIGR01092 166 FWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYG 245 (715)
T ss_pred ecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHC
Confidence 789999999999999999999999999999999988999999999876554 4444556678999999999999999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCc------HHHHHHHHHHHHHHHHH------------HHHHHH
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP------VEVLAENVNLKMEILVN------------SATWAL 171 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~------~~~ia~~AK~As~~L~~------------iA~aL~ 171 (462)
|++++|++|..++.|.+++.|+..||+|.++.+ ++. +..++.+|+.|.+.+.. +++.|+
T Consensus 246 gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~~~---~~~~~~~~~~~~~~~~A~~A~~~w~~~~~~~R~~~L~~la~~l~ 322 (715)
T TIGR01092 246 GTPVIIASGTAPKNITKVVEGKKVGTLFHEDAH---LWPTVEQTGERDMAVAARESSRMLQALSSEQRKEILHDIADALE 322 (715)
T ss_pred CCeEEEeCCCCcchHHHHhcCCCCceEecccch---hhhhhhHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988765 222 45567788888775443 999999
Q ss_pred hCCchhhcCchhcHHH--------------------HHHHHhhccccccccccCCC-----------------CCCCCce
Q psy11677 172 DRGVSVVICNGMQKEA--------------------IKQIVAGRKIGTFFTDASAQ-----------------SGGTPVE 214 (462)
Q Consensus 172 ~~~~~IL~AN~~D~~~--------------------~~~~~~~~~i~t~~a~~~d~-----------------~~~~PlG 214 (462)
++.++|+.+|.+|+.. ++.+++.++ .++.+.++ .++.|+|
T Consensus 323 ~~~eei~~e~gkdl~~a~~~~~~~~~~~el~~~~~ei~~~~~~l~---~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~G 399 (715)
T TIGR01092 323 DNEDEILAENKKDVAAAQGAGYAASLVARLSMSPSKISSLAISLR---QLAAMEDPIGRVLKRTRIADNLILEKTSVPIG 399 (715)
T ss_pred HHHHHHHHHHhhhHHHHHhcCcchhHHHHHhCCHHHHHHHHHHHH---HHhcCCCcccccccccccCCCceeEEEEeece
Confidence 9999999999999973 556777777 76654321 2378999
Q ss_pred eeEEEEeCCCCcccccc-----------------cccccchHHHHH----hhcCCC---CeEEeecCHHHHHHHhcCCCC
Q psy11677 215 VLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFT----KMLPRY---PLHSQVSTREEISDLLSMEKH 270 (462)
Q Consensus 215 Vi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~----~al~~~---~~v~~v~~r~~~~~ll~~~~~ 270 (462)
|+++|++.+ |.++.. +++-+|+ ..|+ ++|.+. +++++|++++.+.++|..+..
T Consensus 400 VV~~I~PwN--P~~~~~~~~~ALaaGN~vvlKpse~tp~t~-~~l~~l~~~alp~g~~~~~~~~v~~~~~~~~~l~~~~~ 476 (715)
T TIGR01092 400 VLLIVFESR--PDALVQIASLAIRSGNGLLLKGGKEAARSN-AILHKVITEAIPIHVGKKLIGLVTSREEIPDLLKLDDV 476 (715)
T ss_pred EEEEEeCCC--hHHHHHHHHHHHHhCCEEEEcCcccchHHH-HHHHHHHHHHcCCCCCCcEEEEeCChHHHHHHHhcCCC
Confidence 999999998 875422 7777888 7777 555543 589999888889999999999
Q ss_pred ccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhccccc
Q psy11677 271 IDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 271 iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (462)
||+|.++||....+.|.+.+. +||..+..|+|++||++|||+++|++++.+++... ...|++...+..++.|.
T Consensus 477 vd~I~fTGS~~vG~~i~~~A~-~pv~lElgGk~p~iV~~dADl~~A~~~i~~~~~~~-----GQ~C~a~~rvlV~~~i~ 549 (715)
T TIGR01092 477 IDLVIPRGSNKLVSQIKKSTK-IPVLGHADGICHVYVDKSASVDMAKRIVRDAKCDY-----PAACNAMETLLVHKDLL 549 (715)
T ss_pred ccEEEEcCCHHHHHHHHHhCC-CCEEEEcCCcceEEECCCCCHHHHHHHHHHHhCCC-----CCccccCcEEEEehhhc
Confidence 999999999999999999995 99999999999999999999999999999999775 35688888888888873
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. |
| >PLN02418 delta-1-pyrroline-5-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=348.65 Aligned_cols=309 Identities=35% Similarity=0.540 Sum_probs=252.7
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHH-hhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD-TVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~-~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
.|+|||++|+++|..++||.|+|+|||||||++||++|++++|++++..+.. .+..++.+.++||||.+|+++|..+.+
T Consensus 173 ~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~ 252 (718)
T PLN02418 173 IFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAAS 252 (718)
T ss_pred eecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999988999999999875543 233445667899999999999999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCC---cHHHHHHHHHHHHHHHHH------------HHHHHHhC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGT---PVEVLAENVNLKMEILVN------------SATWALDR 173 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~---~~~~ia~~AK~As~~L~~------------iA~aL~~~ 173 (462)
+|++++|++|..++.|.++++|+..||+|.+++|--.++ .+..+...|+.|.+.+.. +|+.|.++
T Consensus 253 ~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~~~~~~~~~~~~~aA~~A~~~W~~~~~~eR~~~L~~~a~~l~~~ 332 (718)
T PLN02418 253 AGIPVVITSGYALDNIRKVLRGERVGTLFHQDAHLWAPSKEVGAREMAVAARESSRKLQALSSEERKKILLDVADALEAN 332 (718)
T ss_pred CCCcEEEeCCCCcchHHHHhcCCCCceEeccccchhhhccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999876621112 145556788888776544 89999999
Q ss_pred CchhhcCchhcHHH--------------------HHHHHhhccccccccccCC-----------------CCCCCCceee
Q psy11677 174 GVSVVICNGMQKEA--------------------IKQIVAGRKIGTFFTDASA-----------------QSGGTPVEVL 216 (462)
Q Consensus 174 ~~~IL~AN~~D~~~--------------------~~~~~~~~~i~t~~a~~~d-----------------~~~~~PlGVi 216 (462)
.++|.+.|.+|++. ++.+++.++ ..+.+.+ ..++.|+|||
T Consensus 333 ~~ela~~~~~d~~~~~E~G~~k~~~~~~~~~~~ev~~~~~~~~---~~a~~~~~~g~~~~~~~~~~~~~~~~~r~PlGVV 409 (718)
T PLN02418 333 EELIKAENELDVAAAQEAGYEKSLVSRLTLKPGKIASLAASIR---QLADMEDPIGRVLKRTEVADGLVLEKTSCPLGVL 409 (718)
T ss_pred HHHHHHHHHHhHHHHHHhCCchhHHHHHhccHHHHHHHHHHHH---HHhcCccccCccccccccCCCceEEEEEEeeeEE
Confidence 99999998665442 234444444 3333221 1237999999
Q ss_pred EEEEeCCCCcccccc-----------------cccccchHHHHH----hhcCCC---CeEEeecCHHHHHHHhcCCCCcc
Q psy11677 217 AEIWKNETLNTTVPK-----------------KHAKTSQCKYFT----KMLPRY---PLHSQVSTREEISDLLSMEKHID 272 (462)
Q Consensus 217 ~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~----~al~~~---~~v~~v~~r~~~~~ll~~~~~iD 272 (462)
++||+.+ |..+.. +++-.|+ ..|+ ++|.+. +++++|+.++.+.++|..+.+||
T Consensus 410 ~~I~Pwn--P~~~~~kiapALaaGNtVVlKPse~tp~s~-~~l~~l~~eAlP~gv~~~v~nvv~g~~~~g~~L~~~~~v~ 486 (718)
T PLN02418 410 LIIFESR--PDALVQIASLAIRSGNGLLLKGGKEAARSN-AILHKVITDAIPKTVGGKLIGLVTSRDEIPDLLKLDDVID 486 (718)
T ss_pred EEEeCCC--cHHHHHHHHHHHHhCCEEEEeCCccchHHH-HHHHHHHHHHccccCCcceEEEeCCcHHHHHHHhhCCCCC
Confidence 9999997 975433 6777888 7777 444432 35999987778899999999999
Q ss_pred EEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccc
Q psy11677 273 LIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDV 350 (462)
Q Consensus 273 liIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (462)
+|.++||...|+++...+ .+||+.+..|+||+||++|||+++|++.+++++..+ ..+|++++.+..|..|..
T Consensus 487 ~V~FTGSt~~i~~~aa~~-~k~v~lELGGk~p~iV~~DADld~A~~~i~~~~~~n-----GQ~C~a~~RllVh~~i~d 558 (718)
T PLN02418 487 LVIPRGSNKLVSQIKAST-KIPVLGHADGICHVYVDKSADMDMAKRIVVDAKTDY-----PAACNAMETLLVHKDLVQ 558 (718)
T ss_pred EEEEeCCHHHHHHHHHhc-CCCEEEeCCCcceEEEeCCCCHHHHHHHHHHHhCCC-----CCccccCcEEEEeccccc
Confidence 999999999999999887 499999999999999999999999999999999985 247999999999988843
|
|
| >COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-32 Score=271.03 Aligned_cols=185 Identities=25% Similarity=0.341 Sum_probs=159.3
Q ss_pred hhhhhHHHhHHHHHHHH-----------hcCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccc
Q psy11677 8 LCEQHFLTNFNELFRSI-----------FQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTY 75 (462)
Q Consensus 8 ~~~~~~~~~~~e~~~~~-----------~~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I 75 (462)
-+-.|.+++|+++++.+ .++||+|||||+|||++|.+++||+|++|||+||+||+||+ ||+|++|+++
T Consensus 114 ~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V 193 (369)
T COG0263 114 RRYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEV 193 (369)
T ss_pred HHHHHHHHHHHHHHHCCceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhh
Confidence 34456677777777766 47789999999999999999999999999999999999998 9999999999
Q ss_pred cH--HhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCcHHHHH
Q psy11677 76 TS--EMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLA 153 (462)
Q Consensus 76 ~~--~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~~~~ia 153 (462)
+. .|++.++++++|..|||||.+|+.||+.|+++|++|+|++|..|+.+.+++.|+..||+|.+.... .
T Consensus 194 ~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~GT~F~~~~~~----~----- 264 (369)
T COG0263 194 EEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLFEPQAKE----R----- 264 (369)
T ss_pred cccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCCccEEecCCcc----h-----
Confidence 86 467899999999999999999999999999999999999999999999999999999999987653 0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhhcCchhcHHHHHHHHhhccccccccccCCCCCCCCceeeEEE--EeCC
Q psy11677 154 ENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAEI--WKNE 223 (462)
Q Consensus 154 ~~AK~As~~L~~iA~aL~~~~~~IL~AN~~D~~~~~~~~~~~~i~t~~a~~~d~~~~~PlGVi~~I--yEsr 223 (462)
.++|+ .|++..+...|..++++|+. +.+.++ .+.-.|.||+.|- |...
T Consensus 265 ~~ark-----~Wi~~~~~~~G~i~iD~GA~-----~Al~~~------------gkSLLpaGV~~V~G~F~rG 314 (369)
T COG0263 265 LNARK-----QWIAGALPPAGEITVDAGAV-----EALLEQ------------GKSLLPAGVTSVEGNFSRG 314 (369)
T ss_pred hhhhH-----HHhhcCCCCCceEEECccHH-----HHHHhc------------CCccccccceEeeeeecCC
Confidence 33554 78888888899999999984 666644 2447788888887 6555
|
|
| >PRK13402 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-27 Score=245.79 Aligned_cols=178 Identities=28% Similarity=0.361 Sum_probs=151.1
Q ss_pred HHhHHHHHHHH-----------hcCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccH--Hh
Q psy11677 14 LTNFNELFRSI-----------FQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTS--EM 79 (462)
Q Consensus 14 ~~~~~e~~~~~-----------~~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~--~e 79 (462)
++.+..+++.+ .++|+.|||||++|+++|.+++||.|+++|||||||++||+ +|++++|++|+. .+
T Consensus 118 ~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e 197 (368)
T PRK13402 118 RNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAE 197 (368)
T ss_pred HHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHH
Confidence 45555566553 23567889999999999999999999999999999999998 899999999986 56
Q ss_pred HHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCcHHHHHHHHHHH
Q psy11677 80 RDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAENVNLK 159 (462)
Q Consensus 80 ~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~~~~ia~~AK~A 159 (462)
+..+.++.++.++||||.+|+++|..|.++|++++|++|..|+.|.+++.|+..||+|.+...+ ..+|+
T Consensus 198 ~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~----------~~~rk- 266 (368)
T PRK13402 198 IYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQNPGTYFTPEEKP----------MQEKK- 266 (368)
T ss_pred HHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhcCCCCceEEecCCCC----------ccHHH-
Confidence 6677766677899999999999999999999999999999999999999999999999987664 44554
Q ss_pred HHHHHHHHHHHHhCCchhhcCchhcHHHHHHHHhhccccccccccCCCCCCCCceeeEEE--EeCC
Q psy11677 160 MEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAEI--WKNE 223 (462)
Q Consensus 160 s~~L~~iA~aL~~~~~~IL~AN~~D~~~~~~~~~~~~i~t~~a~~~d~~~~~PlGVi~~I--yEsr 223 (462)
.|++..+..+|..++++++. +++.++ .+.-.|.||++|. |+..
T Consensus 267 ----~Wi~~~~~~~G~i~vd~ga~-----~al~~~------------~~sLl~~gi~~v~g~F~~g 311 (368)
T PRK13402 267 ----HWMAHTSGPQGEIVVENDFD-----RALDNH------------SEQLTSDDVVEIKGDFSVG 311 (368)
T ss_pred ----HHHhCCCCCCeeEEECccHH-----HHHHhc------------CCcccccceEEEeCEecCC
Confidence 78888899999999999994 566543 3457889999987 7777
|
|
| >TIGR01027 proB glutamate 5-kinase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-26 Score=233.59 Aligned_cols=165 Identities=28% Similarity=0.378 Sum_probs=136.4
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHH--hHHhhhhcCCCCCCCCcchHHHHHH
Q psy11677 27 KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSE--MRDTVQFGQKSKVGTGGMDSKVNSA 103 (462)
Q Consensus 27 ~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~--e~~~l~~~~~s~~gtGGM~~Kl~AA 103 (462)
.++.|+|||++|+++|.+++||.|+|+|||||||++||+ +|++++|++++.. +...+.+++++.+++|||.+|++|+
T Consensus 138 ~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa 217 (363)
T TIGR01027 138 EEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAA 217 (363)
T ss_pred eecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHH
Confidence 356789999999999999999999999999999999997 8999999999864 3445665556679999999999999
Q ss_pred HHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcCchh
Q psy11677 104 TWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAENVNLKMEILVNSATWALDRGVSVVICNGM 183 (462)
Q Consensus 104 ~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~~~~ia~~AK~As~~L~~iA~aL~~~~~~IL~AN~~ 183 (462)
..|.++|++++|+||..|+.|.+++.|+..||+|.+...+ ..+|+ .|++..+..+|..++++++.
T Consensus 218 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~----------~~~~k-----~wi~~~~~~~G~i~vD~gA~ 282 (363)
T TIGR01027 218 DLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHAQARR----------LRNRK-----FWIAFASEPAGEITVDAGAE 282 (363)
T ss_pred HHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEEeeCCCC----------ccHHH-----HHHhCCCCcCCeEEEChhHH
Confidence 9999999999999999999999999999999999986653 33453 67777777888888888873
Q ss_pred cHHHHHHHHhhccccccccccCCCCCCCCceeeEEE--EeCC
Q psy11677 184 QKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAEI--WKNE 223 (462)
Q Consensus 184 D~~~~~~~~~~~~i~t~~a~~~d~~~~~PlGVi~~I--yEsr 223 (462)
+.+.+. ..--.|.||+.+. |+..
T Consensus 283 -----~al~~~------------g~sLl~~Gi~~v~g~F~~g 307 (363)
T TIGR01027 283 -----EALLER------------GKSLLPAGIVGVEGNFSRG 307 (363)
T ss_pred -----HHHHhc------------CCccCCccceeeECcccCC
Confidence 555542 1235677777776 6555
|
Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family. |
| >PRK05429 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=229.94 Aligned_cols=155 Identities=32% Similarity=0.493 Sum_probs=121.3
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccH--HhHHhhhhcCCCCCCCCcchHHHHHHH
Q psy11677 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTS--EMRDTVQFGQKSKVGTGGMDSKVNSAT 104 (462)
Q Consensus 28 ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~--~e~~~l~~~~~s~~gtGGM~~Kl~AA~ 104 (462)
++.|+|||++|+++|..++||.|+|+|||||||++||+ +|++++|++++. .++.++.+++++.++||||.+|+++|.
T Consensus 147 ~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~ 226 (372)
T PRK05429 147 EIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAAR 226 (372)
T ss_pred cccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHH
Confidence 46789999999999999999999999999999999998 799999999987 567777766667899999999999999
Q ss_pred HHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCcHHHHHHHHHHHHHHHHH--HHHHHHhCCchhhcCch
Q psy11677 105 WALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAENVNLKMEILVN--SATWALDRGVSVVICNG 182 (462)
Q Consensus 105 ~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~~~~ia~~AK~As~~L~~--iA~aL~~~~~~IL~AN~ 182 (462)
.+.++|++++|+||..|+.|.++|+|+..||+|.+...+ .+..++||++..+..+....+ ++++|..++.+++..+.
T Consensus 227 ~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~-~~~~k~wi~~~~~~~g~i~vd~gA~~al~~~g~sLl~~Gi 305 (372)
T PRK05429 227 IATRAGIPVVIASGREPDVLLRLLAGEAVGTLFLPQEKP-LSARKRWIAGALQPAGEIVVDAGAVKALLERGKSLLPAGV 305 (372)
T ss_pred HHHHCCCeEEEEcCCCccHHHHHhcCCCCCEEEeeCCcc-chHHHHHHhcCCCCCCeEEECccHHHHHHhcCCccCccch
Confidence 999999999999999999999999999999999987663 111244444433332222222 44444444444444444
Q ss_pred h
Q psy11677 183 M 183 (462)
Q Consensus 183 ~ 183 (462)
.
T Consensus 306 ~ 306 (372)
T PRK05429 306 T 306 (372)
T ss_pred h
Confidence 3
|
|
| >cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-23 Score=204.44 Aligned_cols=110 Identities=57% Similarity=0.927 Sum_probs=102.1
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 29 i~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
++|+|||++|+++|..++||+|+++|||||||++||++|++++|++++..+...+..+..+.++||||.+|+++|..+.+
T Consensus 175 ~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~~Kl~Aa~~a~~ 254 (284)
T cd04256 175 ISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITFGTKSRVGTGGMEAKVKAALWALQ 254 (284)
T ss_pred ccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEcccccHhHHHHhhcccccCcccCCcHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999988999999999987776665555677899999999999999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+|++++|++|..|+.|.+++.|+.+||+|.
T Consensus 255 ~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~ 284 (284)
T cd04256 255 GGTSVVITNGMAGDVITKILEGKKVGTFFT 284 (284)
T ss_pred CCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence 999999999999999999999999999984
|
G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. |
| >KOG1154|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=194.83 Aligned_cols=133 Identities=47% Similarity=0.725 Sum_probs=118.2
Q ss_pred hhhHHHhHHHHHHHH---------------hcCCccccC---hHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcc
Q psy11677 10 EQHFLTNFNELFRSI---------------FQKLISIKD---NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKM 71 (462)
Q Consensus 10 ~~~~~~~~~e~~~~~---------------~~~ei~~gd---nD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~Akl 71 (462)
..+.+.|++.++.++ +..+++|+| ||+|||++|.+++||+||+||||||+|+.+|.....++
T Consensus 127 d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~l 206 (285)
T KOG1154|consen 127 DEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKL 206 (285)
T ss_pred hHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCccee
Confidence 456777777777666 356778888 99999999999999999999999999998887666899
Q ss_pred cccccHHhHH-hhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 72 IWTYTSEMRD-TVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 72 I~~I~~~e~~-~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
|+.+++.+.. ...++++|.+|||||.+|+.||..|...|++|+|++|..|..|.+++.|..+||.|....+
T Consensus 207 i~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~~~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~~~ 278 (285)
T KOG1154|consen 207 IHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNALNAGVSVIITNGDAPENITDIVEGKKVGTFFEQLKR 278 (285)
T ss_pred eeeeccCCCCCccccCccCccCcCcchhhHHHHHHHhcCCceEEEeCCCChHHHHHHHhhhhhhhhhhhccc
Confidence 9999987765 6667889999999999999999999999999999999999999999999999999986654
|
|
| >PTZ00489 glutamate 5-kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-22 Score=199.39 Aligned_cols=131 Identities=26% Similarity=0.459 Sum_probs=109.6
Q ss_pred hhhHHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcc---ccc
Q psy11677 10 EQHFLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKM---IWT 74 (462)
Q Consensus 10 ~~~~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~Akl---I~~ 74 (462)
-.+.++.++++++.+. ..|+.|+|||++|+++|..++||+|+++|||||||++||+ +|+|++ +++
T Consensus 114 ~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~ 193 (264)
T PTZ00489 114 TINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHE 193 (264)
T ss_pred hHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeecc
Confidence 3455666777777762 2267889999999999999999999999999999999997 789998 667
Q ss_pred ccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCC--ccccccccCC
Q psy11677 75 YTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGR--KIGTFFTDAS 141 (462)
Q Consensus 75 I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~--~~GT~I~~~~ 141 (462)
+++.+.... .+..+.++||||.+|+++|..+.++|++++|++|+.|+.|.+++.|+ ..||+|.+.-
T Consensus 194 i~~~~~~~~-~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~~ 261 (264)
T PTZ00489 194 LSPDDLVAE-ATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPRV 261 (264)
T ss_pred CCHHHHHHh-cCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeecC
Confidence 777655433 34456789999999999999999999999999999999999999875 4799997653
|
|
| >PRK12314 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-22 Score=199.26 Aligned_cols=132 Identities=33% Similarity=0.549 Sum_probs=110.1
Q ss_pred hhhhHHHhHHHHHHHHh-----------cCCcc--ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCccccc
Q psy11677 9 CEQHFLTNFNELFRSIF-----------QKLIS--IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWT 74 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~~~-----------~~ei~--~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~ 74 (462)
...+.++.++++++.+. ..++. |+|||++|+++|.+++||.|+|+|||||||++||+ +|++++|++
T Consensus 118 ~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~ 197 (266)
T PRK12314 118 SRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSE 197 (266)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEE
Confidence 33444555666666542 22333 89999999999999999999999999999999998 799999999
Q ss_pred ccH--HhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 75 YTS--EMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 75 I~~--~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
|+. .+..++...+.+.++||||.+|++++..+.++|++++|+||+.|+.|.++++|+..||+|.+.
T Consensus 198 I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 198 VTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred ecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCCCceEEccC
Confidence 985 444455444566789999999999999999999999999999999999999999999999764
|
|
| >TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-22 Score=211.53 Aligned_cols=210 Identities=17% Similarity=0.187 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhc-Cchh-------cH--------HHHHHHHhhcccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVI-CNGM-------QK--------EAIKQIVAGRKIGTF 200 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~-AN~~-------D~--------~~~~~~~~~~~i~t~ 200 (462)
++.+..+||.|.+.+.. +|+.|.++.++|.. +|.. |- +.+..++.+.+ .
T Consensus 10 v~~av~~A~~A~~~w~~~s~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk~~~~~~~~~~~~~~~~~~~~~~~~~---~ 86 (488)
T TIGR02518 10 VRNLIRSAKVAQKKLANMTQEQIDKIVKAIVDAAYENAVKLAKMANEETGFGKWEDKVIKNVFAATIVYDSIKDMK---T 86 (488)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhhCc---c
Confidence 55566777777776554 88888888877776 3321 10 11445655555 3
Q ss_pred ccccC-C-----CCCCCCceeeEEEE-eCCCCcccccc------------------cccccchHHHHH----hhcCCC--
Q psy11677 201 FTDAS-A-----QSGGTPVEVLAEIW-KNETLNTTVPK------------------KHAKTSQCKYFT----KMLPRY-- 249 (462)
Q Consensus 201 ~a~~~-d-----~~~~~PlGVi~~Iy-Esr~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~-- 249 (462)
+-... + ..+++|+|||++|| +++ |++++. +++.+|| ..++ ++|.++
T Consensus 87 ~G~~~~~~~~~~~~~~~PlGVV~~I~P~n~--P~~~~~~k~~~AL~aGNaVIlKps~~a~~s~-~~~~~~l~~~l~eaGl 163 (488)
T TIGR02518 87 IGILSEDKEKKVIEIAVPVGVVAGLIPSTN--PTSTAIYKTLISIKARNAIVFSPHPNAKKCI-IETVKLMRKAAEEAGA 163 (488)
T ss_pred cceecCCCCcceEEEEecceEEEEEcccCC--hHHHHHHHHHHHHHcCCcEEEECCccchHHH-HHHHHHHHHHHHHcCc
Confidence 21111 1 13689999999999 999 997555 8999999 7754 666776
Q ss_pred --CeEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 250 --PLHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 250 --~~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
+++|+|+ +++....|++.++ ||+|+||||.++++++.+ + ++||++++.|+||+|||+|||+++|++.+++||+
T Consensus 164 P~gvv~~v~g~~~e~~~~L~~~~~-vd~V~fTGs~~v~~~a~~-~-~~pv~~e~gGn~p~iV~~dADld~Aa~~iv~sk~ 240 (488)
T TIGR02518 164 PEGAIGCITVPTIEGTNELMKNKD-TSLILATGGEAMVKAAYS-S-GTPAIGVGPGNGPAYIERTANVKKAVRDIIDSKT 240 (488)
T ss_pred CcccEEEEcCCCHHHHHHHHhCCC-cCEEEEeCCHHHHHHHHH-c-CCCEEEEcCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 9999998 6999999999887 999999999999999954 4 5999999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHhhhcccccccChhhHHHHHHhHHHHHHHHHHHH
Q psy11677 326 VLQGLNPEDRAKAIYNLADQGEMDVSGLPCLLLFIRLGSLFISGTRSGS 374 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ar~As 374 (462)
++ ++.+|++.+.+..+.. ++...+.+|.+.|++|+..++...
T Consensus 241 ~~----~Gq~C~a~~rllV~~~---i~d~f~~~L~~~g~~~~~~~~~~~ 282 (488)
T TIGR02518 241 FD----NGTICASEQSIIVEEC---NKDAVVEELKKQGGYFLTAEEAEK 282 (488)
T ss_pred cC----CCCCCCCCCEEEEeHH---HHHHHHHHHHHhhhhhcCHHHHHh
Confidence 94 3345666666655554 455889999999999998776543
|
|
| >cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=193.01 Aligned_cols=110 Identities=42% Similarity=0.676 Sum_probs=102.5
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCccccccc--HHhHHhhhhcCCCCCCCCcchHHHHHHHH
Q psy11677 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYT--SEMRDTVQFGQKSKVGTGGMDSKVNSATW 105 (462)
Q Consensus 29 i~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~--~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~ 105 (462)
+.++|+|++|+.+|..++||+|+|+|||||||++||+ +|++++|++++ ..++.+++.+..+.+++|||.+|++++..
T Consensus 139 ~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~ 218 (251)
T cd04242 139 IRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARI 218 (251)
T ss_pred cccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHH
Confidence 5678899999999999999999999999999999998 79999999999 88888876556678999999999999999
Q ss_pred HHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 106 ALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 106 a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+.++|++++|+||..|+.|.++|+|+..||+|.
T Consensus 219 a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 251 (251)
T cd04242 219 ATEAGIPVVIANGRKPDVLLDILAGEAVGTLFL 251 (251)
T ss_pred HHHCCCcEEEEcCCCCCHHHHHHcCCCCCeEeC
Confidence 999999999999999999999999999999984
|
G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir |
| >COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-21 Score=197.18 Aligned_cols=95 Identities=34% Similarity=0.583 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
..+.++||+|++.|+.+|+++||++|.+||+.|++++++||+||++||++|+++|++++|+|||.||++||++|+++|++
T Consensus 6 ~~~~~~Ak~A~~~La~~st~~Kn~aL~a~A~~L~~~~~~IL~AN~~Dl~~are~gl~~~m~DRL~L~~~Ri~~ma~gl~~ 85 (417)
T COG0014 6 EELGKRAKAASRKLATLSTEEKNRALLAMADALEAARAEILAANAKDLAAARENGLSEAMLDRLALTPSRIEAMADGLRQ 85 (417)
T ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHcCCcHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCcccchhcc
Q psy11677 444 IAESSHTNVGKFVKTI 459 (462)
Q Consensus 444 ia~l~dDPvg~v~~~~ 459 (462)
|+.|| ||||+++..|
T Consensus 86 Va~L~-DPvGev~~~~ 100 (417)
T COG0014 86 VAALP-DPVGEVIDGW 100 (417)
T ss_pred HhcCC-CchHhhhccc
Confidence 99999 8999999855
|
|
| >cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=183.03 Aligned_cols=127 Identities=28% Similarity=0.388 Sum_probs=108.8
Q ss_pred hhhhHHHhHHHHHHHHh------------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCccccccc
Q psy11677 9 CEQHFLTNFNELFRSIF------------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYT 76 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~~~------------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~ 76 (462)
++...++.++++++.+. ..++.++|+|++|+.+|..++||+|+|+|||||||++|| |++++|++++
T Consensus 112 ~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P--~~~~~i~~i~ 189 (252)
T cd04241 112 IVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPP--PDAKLIPEID 189 (252)
T ss_pred eeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCC--CCCeEcceeC
Confidence 34455677778888742 123567899999999999999999999999999999999 8899999999
Q ss_pred HHhHHhhhh--cCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcccccc
Q psy11677 77 SEMRDTVQF--GQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137 (462)
Q Consensus 77 ~~e~~~l~~--~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I 137 (462)
..+++++.. ++++.++||||.+|+++|..++++|++++|++|..|+.+.++++|+.+||+|
T Consensus 190 ~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 190 VGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred ccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHcCCCCceEC
Confidence 977776642 1235678999999999999999999999999999999999999999999986
|
Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >KOG4165|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=172.23 Aligned_cols=95 Identities=42% Similarity=0.683 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
.++..||.++++|+.||+|+|.++|..+|++|..++.+|++||++||+.|++.||.++|++||.|++.||++|+.|+++|
T Consensus 4 ~~a~~aR~a~r~LqaLs~e~R~~il~~iad~L~~~~~~I~~aN~~Dla~Ake~GL~~sll~RL~l~~~K~~sl~~g~~~i 83 (433)
T KOG4165|consen 4 EMAENAREAGRILQALSNEDRADILHHIADLLVDNEKEILAANKKDLAEAKEAGLAESLLKRLDLSPGKISSLAAGLRQI 83 (433)
T ss_pred HHHHHHHHHhhHHHhcChhhHHHHHHHHHHHHHhhHHHHHhcchhhHHHHHhcCccHHHHHHhcCChHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCcccchhccc
Q psy11677 445 AESSHTNVGKFVKTIL 460 (462)
Q Consensus 445 a~l~dDPvg~v~~~~~ 460 (462)
|+++ ||||+|+++|.
T Consensus 84 a~~e-dpvGRVl~~~~ 98 (433)
T KOG4165|consen 84 AELE-DPVGRVLKKTR 98 (433)
T ss_pred Hhcc-cchhhheeeee
Confidence 9999 89999999875
|
|
| >TIGR02076 pyrH_arch uridylate kinase, putative | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-18 Score=162.80 Aligned_cols=105 Identities=28% Similarity=0.376 Sum_probs=94.9
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCC-cchHHHHHHHHHHHc
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTG-GMDSKVNSATWALDR 109 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtG-GM~~Kl~AA~~a~~~ 109 (462)
.|||++|+++|.+++||.|+++|||||||++||+ +|++++|+++++.++.++... +..++| +|..|+.+++.+.+.
T Consensus 115 ~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~--~~~~~g~~~~~~~~a~~~~~~~ 192 (221)
T TIGR02076 115 HTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGS--SSVKAGSNEVVDPLAAKIIERS 192 (221)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcC--CCccCCCCceeHHHHHHHHHHC
Confidence 4999999999999999999999999999999997 899999999999988887532 345667 677899999999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|++|+.|+.|.+++.|+..||.|.
T Consensus 193 ~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 221 (221)
T TIGR02076 193 KIRTIVVNGRDPENLEKVLKGEHVGTIIE 221 (221)
T ss_pred CCcEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 99999999999999999999999999873
|
This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP. |
| >PRK14556 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-18 Score=166.12 Aligned_cols=124 Identities=26% Similarity=0.242 Sum_probs=105.8
Q ss_pred cchhhhhHHHhHHHHHHHH----hc--CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHH
Q psy11677 6 TRLCEQHFLTNFNELFRSI----FQ--KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSE 78 (462)
Q Consensus 6 ~~~~~~~~~~~~~e~~~~~----~~--~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~ 78 (462)
...||++.++.+.++++.+ +. -+.++++||++|+++|..++||.|+++|||||||++||+ +|+|++|+++++.
T Consensus 118 ~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~ 197 (249)
T PRK14556 118 DGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFS 197 (249)
T ss_pred CcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchh
Confidence 4579999888888888885 22 247899999999999999999999999999999999998 8999999999987
Q ss_pred hHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 79 MRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 79 e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
+.... . ...| +..++..+.++|++++|+||.+|+.|.+++.|+..||+|.-
T Consensus 198 e~~~~-----~---l~vm--d~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 198 EVVSK-----E---LNVM--DLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred hhccc-----c---hHhH--HHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 76432 0 1123 35688889999999999999999999999999999999963
|
|
| >PRK00358 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-18 Score=163.19 Aligned_cols=115 Identities=23% Similarity=0.243 Sum_probs=98.2
Q ss_pred HHhHHHHHHHHhc------CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhc
Q psy11677 14 LTNFNELFRSIFQ------KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFG 86 (462)
Q Consensus 14 ~~~~~e~~~~~~~------~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~ 86 (462)
.+++.++++.+.. .+.++++||++|+++|..++||.|+++|||||||++||+ +|++++|++++++|+.++
T Consensus 110 ~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~--- 186 (231)
T PRK00358 110 RRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK--- 186 (231)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---
Confidence 4556677776531 355678999999999999999999999999999999998 899999999998875443
Q ss_pred CCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 87 QKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 87 ~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|....|+.+++.|.++|++++|+||..|+.|.++++|+..||+|.
T Consensus 187 -------g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 187 -------GLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred -------CCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 223358889999999999999999999999999999999999984
|
|
| >cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=160.62 Aligned_cols=106 Identities=24% Similarity=0.353 Sum_probs=93.6
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCc-chHHHHHHHHHHH
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGG-MDSKVNSATWALD 108 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGG-M~~Kl~AA~~a~~ 108 (462)
..+||++|+++|..++||.|+++|||||||++||+ +|++++|+++++.++.++....+ .+.|+ |..++.+++.+.+
T Consensus 114 ~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~--~~~g~~~~~d~~a~~~~~~ 191 (221)
T cd04253 114 GQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSS--WKAGSNEPFDPLAAKIIER 191 (221)
T ss_pred CCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCC--cCCCCCcchHHHHHHHHHH
Confidence 46999999999999999999999999999999998 89999999999998887753322 22333 6788999999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.|++++|+||+.|+.|.++|+|+..||.|.
T Consensus 192 ~gi~~~I~~g~~p~~l~~~l~g~~~GT~I~ 221 (221)
T cd04253 192 SGIKTIVVDGRDPENLERALKGEFVGTIIE 221 (221)
T ss_pred CCCeEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 999999999999999999999999999884
|
The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi |
| >PRK14558 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=161.60 Aligned_cols=117 Identities=24% Similarity=0.327 Sum_probs=99.1
Q ss_pred HHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhc
Q psy11677 14 LTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFG 86 (462)
Q Consensus 14 ~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~ 86 (462)
++.++++++.+. ..++++++||++|+++|..++||.|+++|||||||++||+ +|+|++|++++..|..++
T Consensus 108 ~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~--- 184 (231)
T PRK14558 108 YDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM--- 184 (231)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---
Confidence 455666666642 1257899999999999999999999999999999999998 899999999998877664
Q ss_pred CCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 87 QKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 87 ~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
+...| +..++..|.++|++++|+||.+|+.|.+++.|+..||+|.++
T Consensus 185 -----g~~~~--d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~ 231 (231)
T PRK14558 185 -----GLKVM--DTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVPD 231 (231)
T ss_pred -----Ccccc--cHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCCC
Confidence 12234 356888888999999999999999999999999999999763
|
|
| >cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-17 Score=165.88 Aligned_cols=119 Identities=24% Similarity=0.321 Sum_probs=101.9
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++++++.+. .++..++|+|.+|+.+|..++||+|+|+|||||||+++|+ ++++|++++..|+.+
T Consensus 148 ~~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~--~~~~i~~i~~~e~~~ 225 (279)
T cd04250 148 PELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND--PGSLISEISLKEAEE 225 (279)
T ss_pred HHHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC--CccccccCCHHHHHH
Confidence 456667777652 2233457999999999999999999999999999999884 479999999999888
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCcccccc
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFF 137 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I 137 (462)
+.. +.+++|||.+|+++|..++++|+ +|+|++|..|+. +.++|++++.||+|
T Consensus 226 l~~---~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 226 LIA---DGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHH---cCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 763 34789999999999999999998 699999999996 79999999999986
|
In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A |
| >PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=164.92 Aligned_cols=120 Identities=28% Similarity=0.393 Sum_probs=102.9
Q ss_pred hhHHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHh
Q psy11677 11 QHFLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEM 79 (462)
Q Consensus 11 ~~~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e 79 (462)
.--.+.++.+++.+. ..++.++|+|.+|+.+|.+++||+|+|+|||||||+++|. ++++|++++..+
T Consensus 136 ~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~--~~~~i~~i~~~e 213 (268)
T PRK14058 136 EVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD--EGSLIERITPEE 213 (268)
T ss_pred EECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC--CCcCccCcCHHH
Confidence 333566777777752 2245678999999999999999999999999999999884 478999999988
Q ss_pred HHhhhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 80 RDTVQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 80 ~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
+.++. .+++|||.+|+++|..+.++|+ +++|++|+.|+.|..++.|. ||+|.+
T Consensus 214 ~~~l~-----~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~--GT~I~~ 267 (268)
T PRK14058 214 AEELS-----KAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGE--GTVIVN 267 (268)
T ss_pred HHHHh-----hccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCC--ceEEec
Confidence 87764 2589999999999999999999 99999999999999999875 999975
|
|
| >PRK00942 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=164.12 Aligned_cols=119 Identities=28% Similarity=0.334 Sum_probs=104.9
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++++++.+. ..++.++|+|++|+.+|..++|++|+|+|||||||++ ++++|++++..|+.+
T Consensus 152 ~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~-----~~~~i~~i~~~e~~~ 226 (283)
T PRK00942 152 PALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD-----KGQLISELTASEAEE 226 (283)
T ss_pred HHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC-----CCcccccCCHHHHHH
Confidence 567778888762 3356779999999999999999999999999999986 489999999999887
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCccccccccC
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~ 140 (462)
+.. ..+++|||.+|+++|..++++|+ +|+|++|..|+. |.++|+|+++||+|.++
T Consensus 227 ~~~---~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 227 LIE---DGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred HHH---cCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 763 34789999999999999999998 799999999999 99999999999999863
|
|
| >CHL00202 argB acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-17 Score=163.75 Aligned_cols=122 Identities=25% Similarity=0.351 Sum_probs=101.1
Q ss_pred hHHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhH
Q psy11677 12 HFLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR 80 (462)
Q Consensus 12 ~~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~ 80 (462)
-..+.++.+++.+. ..+....|+|++|+.+|..++||+|+|+|||||||+++ .+| +++|++++..|+
T Consensus 149 v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~-~d~-~~~i~~i~~~e~ 226 (284)
T CHL00202 149 VDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADI-NDP-NSLISTLNIKEA 226 (284)
T ss_pred cCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCC-CCC-CCccccccHHHH
Confidence 33456677777652 11223469999999999999999999999999999842 334 489999999888
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCccccccc
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFT 138 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~ 138 (462)
.++.. +.+++|||.+|+++|..++++|+ +++|++|+.|+. +.++|++++.||+|.
T Consensus 227 ~~l~~---~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 227 RNLAS---TGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred HHHHh---cCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 88762 34789999999999999999999 689999999997 799999999999985
|
|
| >PRK12353 putative amino acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-17 Score=166.90 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=90.1
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHH--H
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWAL--D 108 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~--~ 108 (462)
|+|||++|+++|..++||+|+++|||||||+++| +|++++|++++..++..+... +.+++|||.+|+++|..++ +
T Consensus 211 ~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~-~~~a~~i~~i~~~e~~~~~~~--~~~~tGGM~~Kl~aA~~a~~~~ 287 (314)
T PRK12353 211 VIDKDFASAKLAELVDADLLIILTAVDKVYINFG-KPNQKKLDEVTVSEAEKYIEE--GQFAPGSMLPKVEAAISFVESR 287 (314)
T ss_pred ecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC-CCCCeECcCcCHHHHHHHHhc--CCcCCCCcHHHHHHHHHHHHHc
Confidence 5888999999999999999999999999999765 688999999999888777632 3578999999999999988 6
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
.|++++|++ ++.+.+++.|+ .||+|.+
T Consensus 288 ~g~~v~I~~---~~~i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 288 PGRKAIITS---LEKAKEALEGK-AGTVIVK 314 (314)
T ss_pred CCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence 688999997 67888999998 8999964
|
|
| >cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-17 Score=158.32 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=98.6
Q ss_pred HHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhc
Q psy11677 14 LTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFG 86 (462)
Q Consensus 14 ~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~ 86 (462)
.+++.++++.+. ..++++++||++|+++|..++||+|+++|||||||++||+ +|++++|+++++.|+.++..
T Consensus 108 ~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~- 186 (229)
T cd04239 108 RRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL- 186 (229)
T ss_pred HHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc-
Confidence 455666666642 2256789999999999999999999999999999999998 79999999999988877631
Q ss_pred CCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 87 QKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 87 ~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|..+..++..+.+.|++++|+||+.|+.+.++++|+..||+|.
T Consensus 187 ---------~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 187 ---------KVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred ---------CCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 4556778888999999999999999999999999998999874
|
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als |
| >cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=161.04 Aligned_cols=121 Identities=27% Similarity=0.362 Sum_probs=105.4
Q ss_pred hhhhHHHhHHHHHHHHh--------------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccc
Q psy11677 9 CEQHFLTNFNELFRSIF--------------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIW 73 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~~~--------------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~ 73 (462)
.++...+.++++++.+. ..++.++++|++|+.+|..++|++|+|+|||||||++||+ +|++++|+
T Consensus 113 ~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~ 192 (248)
T cd02115 113 ITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLS 192 (248)
T ss_pred ceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECC
Confidence 34445666777777651 2335679999999999999999999999999999999998 79999999
Q ss_pred cccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcccccc
Q psy11677 74 TYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137 (462)
Q Consensus 74 ~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I 137 (462)
++++.|+.++.. .|+|..|++++..+.++|++++|+|+..|+.| ++|++++.||+|
T Consensus 193 ~i~~~e~~~l~~-------~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I 248 (248)
T cd02115 193 ELTYEEAAELAY-------AGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248 (248)
T ss_pred cCCHHHHHHHHH-------cCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence 999988887752 47799999999999999999999999999999 999999999986
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. |
| >TIGR00746 arcC carbamate kinase | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-17 Score=164.08 Aligned_cols=101 Identities=26% Similarity=0.376 Sum_probs=89.8
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
++|||++|+++|..++||+||++|||||||++ |.+|++++|++++..++..+.. .+.+++|||.+|+++|..+++.|
T Consensus 208 ~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~-~~~p~a~~i~~it~~e~~~~~~--~g~~~tGgM~~Kl~AA~~~~~~g 284 (310)
T TIGR00746 208 VIDKDLASEKLAEEVNADILVILTDVDAVYIN-YGKPDEKALREVTVEELEDYYK--AGHFAAGSMGPKVEAAIEFVESG 284 (310)
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC-CCCCCCcCCcCcCHHHHHHHHh--cCCcCCCCcHHHHHHHHHHHHhC
Confidence 35999999999999999999999999999986 5678999999999999888763 35688999999999998888775
Q ss_pred -CeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 111 -VSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 111 -v~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.+++|++ ++.+.+++.|+ .||+|.
T Consensus 285 ~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 285 GKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred CCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 5999997 68899999999 999985
|
The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff. |
| >cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-17 Score=158.92 Aligned_cols=122 Identities=25% Similarity=0.295 Sum_probs=103.3
Q ss_pred hhhhhHHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCccccccc
Q psy11677 8 LCEQHFLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYT 76 (462)
Q Consensus 8 ~~~~~~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~ 76 (462)
.++.-..+.++++++.+. ..++.++|+|++|+.+|..++||+|+|+|||||||++ ++++|++++
T Consensus 122 ~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~-----~~~~i~~i~ 196 (256)
T cd04238 122 EVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDD-----PGSLISELT 196 (256)
T ss_pred ceEEECHHHHHHHHHCCCEEEECCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCC-----CCCccccCC
Confidence 344445667778888752 2346788999999999999999999999999999986 379999999
Q ss_pred HHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhHHHHHHcC-Ccccccc
Q psy11677 77 SEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAG-RKIGTFF 137 (462)
Q Consensus 77 ~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~L~~~l~g-~~~GT~I 137 (462)
..|+.++.. +.+++|||.+|+++|..+++.|+ +++|++|+.|+.|.+++.| ++.||+|
T Consensus 197 ~~e~~~~~~---~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 197 PKEAEELIE---DGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred HHHHHHHHH---cCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 988887763 34779999999999999999987 7999999999999888877 6789986
|
Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >COG1608 Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.6e-17 Score=155.83 Aligned_cols=122 Identities=25% Similarity=0.364 Sum_probs=105.9
Q ss_pred HHhHHHHHHHHhcC------------CccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhH
Q psy11677 14 LTNFNELFRSIFQK------------LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMR 80 (462)
Q Consensus 14 ~~~~~e~~~~~~~~------------ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~ 80 (462)
.+.+.++++.++.. ++.+.|.|.++..+|..+++|+++|+|||||||++||. .|+++.++++...
T Consensus 117 l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~-- 194 (252)
T COG1608 117 LEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGR-- 194 (252)
T ss_pred HHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhh--
Confidence 45667777777432 46789999999999999999999999999999999997 8888888877654
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
...+++++.++||||..|++++....+.|.+++|+||..|++|.+++.|+.+||.|.
T Consensus 195 -~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~~l~G~~vGT~I~ 251 (252)
T COG1608 195 -VALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRALRGENVGTRID 251 (252)
T ss_pred -hhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHHHHHhcCCCCceEec
Confidence 233455667999999999999999999999999999999999999999999999985
|
|
| >PRK14557 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=157.77 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=102.6
Q ss_pred chhhhhHHHhHHHHHHHH----hcC--CccccChHHHHHHHHHHcCCCeEEEE-ecCcccccCCCC-CCCCcccccccHH
Q psy11677 7 RLCEQHFLTNFNELFRSI----FQK--LISIKDNDSLAAMLAAEIQADLLILM-SDVNGIYTKAPW-EEGAKMIWTYTSE 78 (462)
Q Consensus 7 ~~~~~~~~~~~~e~~~~~----~~~--ei~~gdnD~lAa~lA~~l~Ad~LIiL-TDVdGVY~~dP~-~p~AklI~~I~~~ 78 (462)
..|++....++.+.++.+ +.. +.++.++|++|+++|..++||.|+++ |||||||++||+ +|+|++|+++++.
T Consensus 108 ~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~ 187 (247)
T PRK14557 108 AVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYN 187 (247)
T ss_pred cccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChh
Confidence 455665556677777774 223 46889999999999999999999999 599999999998 8999999999987
Q ss_pred hHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 79 MRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 79 e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
|.... + ..-|. ..|+..|.++|++++|+||.+|+.|.+++.|+..||+|.+.+.
T Consensus 188 e~~~~----~----~~~~~--~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~~ 241 (247)
T PRK14557 188 DVVRQ----N----IQVMD--QAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDAS 241 (247)
T ss_pred hhccc----C----HHHHH--HHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCcc
Confidence 66210 0 11243 3588889999999999999999999999999999999987764
|
|
| >cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-17 Score=160.83 Aligned_cols=104 Identities=24% Similarity=0.277 Sum_probs=89.4
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHH
Q psy11677 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWAL 107 (462)
Q Consensus 29 i~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~ 107 (462)
.+++|||++|+++|..++||.|+++|||||||++||+ +|++++|++++..++.++... ....++||.+|++++.
T Consensus 158 ~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~--~~~~~~~~~~~l~aa~--- 232 (262)
T cd04255 158 IPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLD--DLVLERPVLDLLQNAR--- 232 (262)
T ss_pred CCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcC--CCCCcHHHHHHHHHhC---
Confidence 5688999999999999999999999999999999998 799999999999887766411 1124788888887753
Q ss_pred HcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 108 DRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 108 ~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
..++++|++|+.|+.|.+++.|+..||+|.
T Consensus 233 -~~~~v~I~~g~~~~~L~~~l~g~~~GT~i~ 262 (262)
T cd04255 233 -HVKEVQIVNGLVPGNLTRALRGEHVGTIIR 262 (262)
T ss_pred -CCCcEEEEeCCCCCHHHHHHcCCCCceEeC
Confidence 225999999999999999999999999984
|
The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >PLN02512 acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=160.11 Aligned_cols=121 Identities=22% Similarity=0.277 Sum_probs=100.4
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++++++.+. ..+....|+|++|+.+|..|+||+|+|+|||||||+++| +++++|++++..|+.+
T Consensus 176 ~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~--~~~~lI~~i~~~e~~~ 253 (309)
T PLN02512 176 PTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKD--DPGSLVKELDIKGVRK 253 (309)
T ss_pred HHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCC--CCcCCCcccCHHHHHH
Confidence 455666666642 112233599999999999999999999999999998764 3478999999998888
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCcccccccc
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFTD 139 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~ 139 (462)
+.. ..+++|||.+|+++|..+++.|+ +++|++|..|+. +.++|++++.||+|.+
T Consensus 254 l~~---~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 309 (309)
T PLN02512 254 LIA---DGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMITG 309 (309)
T ss_pred HHh---CCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence 762 35789999999999999999999 699999999988 5689999999999863
|
|
| >COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-16 Score=153.05 Aligned_cols=123 Identities=23% Similarity=0.261 Sum_probs=108.3
Q ss_pred chhhhhHHHhHHHHHHHH----hcC--CccccChHHHHHHHHHHcCCCeEEEEec-CcccccCCCC-CCCCcccccccHH
Q psy11677 7 RLCEQHFLTNFNELFRSI----FQK--LISIKDNDSLAAMLAAEIQADLLILMSD-VNGIYTKAPW-EEGAKMIWTYTSE 78 (462)
Q Consensus 7 ~~~~~~~~~~~~e~~~~~----~~~--ei~~gdnD~lAa~lA~~l~Ad~LIiLTD-VdGVY~~dP~-~p~AklI~~I~~~ 78 (462)
..|+++.++...++++.+ +.. .-||+++|+.|++.|..++||.|+..|+ |||||++||+ +|+|++++++++.
T Consensus 108 ~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~ 187 (238)
T COG0528 108 QVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYD 187 (238)
T ss_pred cccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHH
Confidence 358999999999999987 444 7899999999999999999999999995 9999999998 8999999999999
Q ss_pred hHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 79 MRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 79 e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
|+.+.. ..-| ...|+..+.++|++++++|+..+++|.+++.|+..||.|.+
T Consensus 188 e~l~~~--------l~vm--D~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~ 238 (238)
T COG0528 188 EVLKIG--------LKVM--DPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238 (238)
T ss_pred HHHHhc--------Ceee--cHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence 997652 1223 24688889999999999999999999999999999999863
|
|
| >PRK12686 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-16 Score=160.38 Aligned_cols=101 Identities=26% Similarity=0.333 Sum_probs=89.0
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc-
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR- 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~- 109 (462)
|+|+|.+|+++|..++||+|+|||||||||++ |.+|++++|++++..++..+... +.+++|||.+|+++|..+.+.
T Consensus 209 vid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~-~~~p~ak~I~~I~~~e~~~li~~--g~~~tGGM~pKveAA~~av~~g 285 (312)
T PRK12686 209 VIDKDFASEKLAEQIDADLLIILTGVENVFIN-FNKPNQQKLDDITVAEAKQYIAE--GQFAPGSMLPKVEAAIDFVESG 285 (312)
T ss_pred ccCccHHHHHHHHHcCCCEEEEEeCchhhccC-CCCCCCeECCccCHHHHHHHhhC--CCccCCCcHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999994 66789999999999998887642 457899999999999999976
Q ss_pred -CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 -GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 -Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|.+++|++ ++.+.+++.|+ .||+|.
T Consensus 286 ~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 286 EGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred CCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 45888887 67788999998 799985
|
|
| >cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=154.03 Aligned_cols=116 Identities=27% Similarity=0.298 Sum_probs=99.3
Q ss_pred HHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHH
Q psy11677 13 FLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD 81 (462)
Q Consensus 13 ~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~ 81 (462)
..+.++++++.++ ..++.+.++|++|+.+|..++|+ ++++|||||||++| +++|++++..|++
T Consensus 125 ~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~-----~~~i~~i~~~e~~ 198 (252)
T cd04249 125 DPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDAD-----KQLISELNAKQAA 198 (252)
T ss_pred cHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCC-----CcCccccCHHHHH
Confidence 3566777777752 34567789999999999999999 68999999999874 4799999998888
Q ss_pred hhhhcCCCCCCCCcchHHHHHHHHHHHcC-CeEEEEeCCChhHHHHHHcCCcccccc
Q psy11677 82 TVQFGQKSKVGTGGMDSKVNSATWALDRG-VSVVICNGMQKEAIKQIVAGRKIGTFF 137 (462)
Q Consensus 82 ~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G-v~v~I~sG~~~~~L~~~l~g~~~GT~I 137 (462)
++.. +..++|||.+|+.+|..+++.| ++++|++|+.|+.|.++|+|++.||+|
T Consensus 199 ~~~~---~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~I 252 (252)
T cd04249 199 ELIE---QGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGEPVGTKI 252 (252)
T ss_pred HHHh---cCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCCCCCcCC
Confidence 8763 3478999999999999988876 599999999999999999999999986
|
There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). |
| >TIGR02075 pyrH_bact uridylate kinase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-16 Score=152.48 Aligned_cols=117 Identities=23% Similarity=0.239 Sum_probs=98.8
Q ss_pred hHHHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEec-CcccccCCCC-CCCCcccccccHHhHHhh
Q psy11677 12 HFLTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSD-VNGIYTKAPW-EEGAKMIWTYTSEMRDTV 83 (462)
Q Consensus 12 ~~~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTD-VdGVY~~dP~-~p~AklI~~I~~~e~~~l 83 (462)
+..+.++++++.+. ..+++++|||.+|+++|..++||.|+++|| |||||++||+ +|++++|+++++.|....
T Consensus 109 ~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~ 188 (233)
T TIGR02075 109 YIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK 188 (233)
T ss_pred cCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc
Confidence 33566777777642 225789999999999999999999999999 9999999998 799999999998886542
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 84 QFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 84 ~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+.. ..++.++..+.++|++++|+||.+|+.|.+++.|+.+||+|.
T Consensus 189 --------~~~--~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 189 --------NLK--VMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred --------CHH--HHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 111 246778888999999999999999999999999999999984
|
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076. |
| >cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.9e-16 Score=149.37 Aligned_cols=115 Identities=21% Similarity=0.207 Sum_probs=96.2
Q ss_pred HHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhc
Q psy11677 14 LTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFG 86 (462)
Q Consensus 14 ~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~ 86 (462)
.+.+.++++.+. ..+.++.+||++|+++|..++||.|+++|||||||++||+ +|++++|++++..+..+.
T Consensus 110 ~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~--- 186 (231)
T cd04254 110 RRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK--- 186 (231)
T ss_pred HHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhc---
Confidence 355666666642 1135678999999999999999999999999999999998 799999999999877542
Q ss_pred CCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 87 QKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 87 ~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+..+ .++.++..+.+.|++++|+||..|+.|.+++.|+..||+|.
T Consensus 187 -----~~~~--~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 187 -----GLKV--MDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred -----chhh--hHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 1223 46778888999999999999999999999999999999984
|
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be |
| >cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=154.48 Aligned_cols=101 Identities=28% Similarity=0.422 Sum_probs=87.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|+|+|++|+++|..++||.|+++|||||||+++ .+|++++|++++..++..+.. .+.+++|||.+|+++|..+.+.|
T Consensus 207 Vid~D~~AallA~~l~Ad~LiilTdVdGVy~~~-~~pda~~i~~Is~~e~~~l~~--~g~~~tGGM~pKv~aA~~~a~~g 283 (308)
T cd04235 207 VIDKDLASALLAEEINADLLVILTDVDNVYINF-GKPNQKALEQVTVEELEKYIE--EGQFAPGSMGPKVEAAIRFVESG 283 (308)
T ss_pred ccCccHHHHHHHHHcCCCEEEEEecCCeEECCC-CCCCCeEcCCcCHHHHHHHHh--cCccccCCcHHHHHHHHHHHHhC
Confidence 357799999999999999999999999999954 468999999999999887753 34678999999999999888875
Q ss_pred -CeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 111 -VSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 111 -v~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.+++|.+ ++.+.+++.|+ .||+|.
T Consensus 284 g~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 284 GKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred CCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 5888876 67799999998 799873
|
Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK). |
| >PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-15 Score=152.58 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=88.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|+|+|.+|+++|..++||+|||+|||||||++ |.+|++++|++++..|+..+.. ...+.+|||.+|+++|..+++.|
T Consensus 211 ViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~~p~~~~i~~It~~e~~~~i~--~g~~~~GgM~pKv~AA~~~v~~g 287 (313)
T PRK12454 211 VIDKDLASELLAEELNADIFIILTDVEKVYLN-YGKPDQKPLDKVTVEEAKKYYE--EGHFKAGSMGPKILAAIRFVENG 287 (313)
T ss_pred ecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CCCCCCeEccccCHHHHHHHHh--cCCcCCCChHHHHHHHHHHHHcC
Confidence 35789999999999999999999999999986 5578999999999999887753 23578999999999999888876
Q ss_pred C-eEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 111 V-SVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 111 v-~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
. +++|++ ++.+.+++.|+ .||+|.+
T Consensus 288 g~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 288 GKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred CCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 5 899985 56799999998 7999964
|
|
| >COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-15 Score=148.28 Aligned_cols=104 Identities=30% Similarity=0.372 Sum_probs=93.7
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
...+.|+.|..+|..|+|++||++|||+|||+++|+ | .+|++++..+++++.. ....+|||.+|+++|..|+++
T Consensus 160 ~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~-~--s~i~~~~~~~~~~li~---~~~i~~GMi~Kv~~a~~A~~~ 233 (265)
T COG0548 160 LNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGD-P--SLISELDAEEAEELIE---QGIITGGMIPKVEAALEALES 233 (265)
T ss_pred EeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCC-c--eeeccCCHHHHHHHHh---cCCccCccHHHHHHHHHHHHh
Confidence 447999999999999999999999999999997542 2 7999999999998873 347899999999999999999
Q ss_pred CC-eEEEEeCCChhH-HHHHHcCCcccccccc
Q psy11677 110 GV-SVVICNGMQKEA-IKQIVAGRKIGTFFTD 139 (462)
Q Consensus 110 Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~ 139 (462)
|+ +++|+||+.++. +.++|++.++||+|.+
T Consensus 234 Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 234 GVRRVHIISGRVPHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred CCCeEEEecCCCcchHHHHHhcCCCcceEecC
Confidence 99 899999999999 8899999999999863
|
|
| >PRK12354 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-15 Score=151.23 Aligned_cols=101 Identities=29% Similarity=0.362 Sum_probs=87.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|+|+|.+|+++|..++||+|+|||||||||++ |.+|++++|++++..++.++ .+++|||.+|+++|..+.+.|
T Consensus 202 ViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~-~~~p~~k~i~~it~~e~~~~------~f~~GgM~pKV~AA~~~~~~g 274 (307)
T PRK12354 202 VIDKDLAAALLAEQLDADLLLILTDVDAVYLD-WGKPTQRAIAQATPDELREL------GFAAGSMGPKVEAACEFVRAT 274 (307)
T ss_pred cCCccHHHHHHHHHcCCCEEEEEeCCcceecC-CCCCCCeECCCCCHHHHHhh------CCCcCChHHHHHHHHHHHHhC
Confidence 67999999999999999999999999999996 44688999999999888776 468999999999998887765
Q ss_pred C-eEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 111 V-SVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 111 v-~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
. +++|.+ ++.+.++|.|+ .||+|.+...
T Consensus 275 g~~viI~~---~~~l~~al~G~-~GT~I~~~~~ 303 (307)
T PRK12354 275 GKIAGIGS---LEDIQAILAGE-AGTRISPETA 303 (307)
T ss_pred CCEEEECC---HHHHHHHHCCC-CceEEecCCC
Confidence 5 788853 56789999997 7999987543
|
|
| >PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9e-15 Score=166.45 Aligned_cols=160 Identities=20% Similarity=0.166 Sum_probs=125.3
Q ss_pred CCCCceeeEEE-EeCCCCcccccc------------------cccccchHHHHH----hhcCCC----CeEEeec--CHH
Q psy11677 209 GGTPVEVLAEI-WKNETLNTTVPK------------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TRE 259 (462)
Q Consensus 209 ~~~PlGVi~~I-yEsr~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~ 259 (462)
++.|+|||++| ++.+ |..+.. +++.+|+ ..++ ++|.++ ++||+|+ +++
T Consensus 105 ~~~P~GVv~~I~pwn~--P~~~~~~~~~~ALaaGN~vVlKps~~a~~t~-~~~~~l~~~~l~~aG~p~g~v~vv~g~~~~ 181 (862)
T PRK13805 105 IAEPVGVIAGITPTTN--PTSTAIFKALIALKTRNPIIFSFHPRAQKSS-IAAAKIVLDAAVAAGAPKDIIQWIEEPSVE 181 (862)
T ss_pred EeecceEEEEEeCCCC--hhHHHHHHHHHHHHhCCcEEEECCcchHHHH-HHHHHHHHHHHHHcCcCcccEEEecCCCHH
Confidence 48999999999 9999 986433 7888898 7777 555565 8999998 688
Q ss_pred HHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 260 EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 260 ~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
...+|++.++ ||+|+++||.++++++.++ .+||++++.|+||+|||+|||+++|++.++++|++. ....|++.
T Consensus 182 ~~~~L~~~~~-vd~I~fTGs~~v~~~a~~~--~~pv~~e~gGk~p~iV~~dADl~~Aa~~i~~~k~~n----~GQ~C~a~ 254 (862)
T PRK13805 182 LTNALMNHPG-IALILATGGPGMVKAAYSS--GKPALGVGAGNVPAYIDKTADIKRAVNDILLSKTFD----NGMICASE 254 (862)
T ss_pred HHHHHHcCCC-ccEEEecCCHHHHHHHHhc--CCCeEEECCCCCeEEEeCCCCHHHHHHHHHHhhhcc----CCCccCCC
Confidence 8999998776 9999999999999988654 599999999999999999999999999999999994 44467777
Q ss_pred HHhhhcccccccChhhHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy11677 340 YNLADQGEMDVSGLPCLLLFIRLGSLFISGTRSGSRVLQGLNPEDRAKAIYNLAD 394 (462)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~ 394 (462)
+.+..++.|. ...+.+|.+.|. ...+.+++.++...+.+
T Consensus 255 ~~v~V~~~i~---d~f~~~l~~~g~-------------~l~~~~~~~~v~~~i~~ 293 (862)
T PRK13805 255 QAVIVDDEIY---DEVKEEFASHGA-------------YFLNKKELKKLEKFIFG 293 (862)
T ss_pred ceEEEehhhH---HHHHHHHHHhCC-------------eeCCHHHHHHHHHHHhh
Confidence 7776666654 444445555553 23555555555554443
|
|
| >PRK05279 N-acetylglutamate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-15 Score=155.38 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=101.4
Q ss_pred HHHhHHHHHHHHhc-----------CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHH
Q psy11677 13 FLTNFNELFRSIFQ-----------KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD 81 (462)
Q Consensus 13 ~~~~~~e~~~~~~~-----------~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~ 81 (462)
-.+.++.++++++. ++....|.|++|+.+|..|+|++|+|+|||||||++ ++++|++++..+.+
T Consensus 157 ~~~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~-----~~~~i~~i~~~~~~ 231 (441)
T PRK05279 157 DAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE-----DGELIRELSPNEAQ 231 (441)
T ss_pred eHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC-----CCchhhhCCHHHHH
Confidence 34556667776632 233457999999999999999999999999999964 58999999999988
Q ss_pred hhhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhHH-HHHHcCCccccccccCC
Q psy11677 82 TVQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 82 ~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~L-~~~l~g~~~GT~I~~~~ 141 (462)
++.....+.+.+|||.+|+++|..++++|+ +++|++|..|+.| .++++.++.||.|.++.
T Consensus 232 ~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~~ 293 (441)
T PRK05279 232 ALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVMES 293 (441)
T ss_pred HHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecCc
Confidence 776322245679999999999999999999 8999999999995 55666778999999863
|
|
| >cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-15 Score=144.19 Aligned_cols=91 Identities=23% Similarity=0.254 Sum_probs=81.5
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|+||++|+.+|.+++||.|+++|||||||++||+ +|++++|+++++.|+.++.. .|.+..|..++..+.++
T Consensus 148 ~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~-------~G~~~~~~~a~~~a~~~ 220 (239)
T cd04246 148 RGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMAS-------LGAKVLHPRSVELAKKY 220 (239)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHh-------CCCcccCHHHHHHHHHC
Confidence 45899999999999999999999999999999998 79999999999999988752 25577889999999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|.|+++|+ .||+|+
T Consensus 221 gi~i~i~~~~~~~----------~gt~i~ 239 (239)
T cd04246 221 NVPLRVRSSFSEN----------PGTLIT 239 (239)
T ss_pred CCeEEEecCCCCC----------CCcEeC
Confidence 9999999998872 599884
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati |
| >cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC) | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-15 Score=145.20 Aligned_cols=111 Identities=29% Similarity=0.403 Sum_probs=95.5
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++.+++.++ ..+..+.|+|++|+.+|..|+||+|+|+|||||||++ +++|++++..|+.+
T Consensus 135 ~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~------~~~i~~i~~~e~~~ 208 (257)
T cd04251 135 SDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLD------GRVIERITVSDAES 208 (257)
T ss_pred HHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeC------CcccCccCHHHHHH
Confidence 455666666642 2344568999999999999999999999999999973 78999999988887
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhHHHHHHcCCcccccc
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFF 137 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~L~~~l~g~~~GT~I 137 (462)
+. .+.+|||.+|+++|..++++|+ +++|++|+.|+.+.+++.|+ ||.|
T Consensus 209 l~-----~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~~l~~~l~g~--gT~i 257 (257)
T cd04251 209 LL-----EKAGGGMKRKLLAAAEAVEGGVREVVIGDARADSPISSALNGG--GTVI 257 (257)
T ss_pred HH-----hhCCCchHHHHHHHHHHHHcCCCEEEEecCCCccHHHHHHcCC--CcCC
Confidence 75 2489999999999999999999 89999999999999999875 9976
|
This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK). |
| >cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=145.76 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=97.0
Q ss_pred HHhHHHHHHHHhc-----------CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIFQ-----------KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~~-----------~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++.++++++. ++....+.|++|+.+|..++|++|+|+|||||||++ ++++|++++..++++
T Consensus 151 ~~~i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~-----~~~~i~~i~~~e~~~ 225 (280)
T cd04237 151 ADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD-----DGELIRELTAQEAEA 225 (280)
T ss_pred HHHHHHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC-----CCCccccCCHHHHHH
Confidence 4445666666531 122346899999999999999999999999999974 478999999988888
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCcccccc
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFF 137 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I 137 (462)
+... ....+|||.+|+++|..+++.|+ +++|++|+.|+. +.++|+.++.||+|
T Consensus 226 l~~~--~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 226 LLET--GALLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHc--CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 7632 12249999999999999999999 999999999988 77899999999986
|
Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >TIGR00407 proA gamma-glutamyl phosphate reductase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=151.75 Aligned_cols=193 Identities=31% Similarity=0.428 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCchhhcCchhcHHH--------------------HHHHHhhccccccccccCC--------
Q psy11677 155 NVNLKMEILVNSATWALDRGVSVVICNGMQKEA--------------------IKQIVAGRKIGTFFTDASA-------- 206 (462)
Q Consensus 155 ~AK~As~~L~~iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~~~~~i~t~~a~~~d-------- 206 (462)
....-.+.|..+|+.|+++.++|...|..|++. ++.+++.++ ..+...+
T Consensus 12 ~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~a~~~E~Gk~~~~~~~l~~a~~ev~~~~~~~~---~~a~~a~~~g~~~~~ 88 (398)
T TIGR00407 12 STAEKNDALSKIADGLEAQAPAILAANAKDIAVAKENGLADALLDRLLLTEGRLKGIADGVK---DVIELADPVGKVIDG 88 (398)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHHhHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHH---HHhcCCCCCcccccc
Confidence 333444556669999999999998888777654 334444444 3331110
Q ss_pred ---------CCCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHHhh----cCCC----CeE
Q psy11677 207 ---------QSGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFTKM----LPRY----PLH 252 (462)
Q Consensus 207 ---------~~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~~a----l~~~----~~v 252 (462)
...+.|+|||++|++-. |+.+.. +.+-+|+ ..|++. |.++ +++
T Consensus 89 ~~~~~~~~~~~~~~PlGVV~~I~pw~--p~~~~~~~~~ALaaGN~vVlKps~~tp~~~-~~l~~~~~~al~eaGlP~gvv 165 (398)
T TIGR00407 89 RELDSGLTLERVRVPLGVLGVIYEAR--PNVTVDIASLCLKTGNAVILRGGKEAVRSN-KALVEVIQDALAQTGLPVGAV 165 (398)
T ss_pred eecCCCceEEEEEeCcEEEEEEeCCC--chHHHHHHHHHHHhCCeEEECCChhhHHHH-HHHHHHHHHHHHHcCCChhHE
Confidence 12489999999999886 875333 5666777 777744 5565 999
Q ss_pred Eeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 253 SQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 253 ~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
|+|+ +++.+.++|..+.+||+|.++||..+.+.+.+++ ++||+..+.|++++||++|||+++|++.++.+|.+.
T Consensus 166 ~~v~g~~~~~~~~~l~~~~~v~~v~fTGs~~vg~~~~~~~-~~~~~~e~gGk~p~iV~~dADl~~Aa~~iv~~~~~~--- 241 (398)
T TIGR00407 166 QLIETPSRELVSELLDLDEYIDLLIPRGGNGLVRLIKQTS-TIPVLGHGDGICHIYLDESADLIKAIKVIVNAKTQR--- 241 (398)
T ss_pred EEecCCCHHHHHHHHhCCCCeeEEEecCCHHHHHHHHHhC-CCCEEEecCCcceEEEeCCCCHHHHHHHHHhhhcCC---
Confidence 9998 4778999999999999999999999999998877 489999999999999999999999999999999853
Q ss_pred CCchhHHHHHHhhhcccccccChhhHHHH
Q psy11677 331 NPEDRAKAIYNLADQGEMDVSGLPCLLLF 359 (462)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (462)
...|.++..+..++.|.-.+.+.+.+.
T Consensus 242 --GQ~C~a~~rv~V~~~v~d~f~~~l~~~ 268 (398)
T TIGR00407 242 --PSTCNAIETLLVNKAIAREFLPVLENQ 268 (398)
T ss_pred --CCcccccceEEEeHHHHHHHHHHHHHH
Confidence 357888888888877765555544433
|
The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif. |
| >cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-15 Score=142.71 Aligned_cols=91 Identities=25% Similarity=0.277 Sum_probs=81.3
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|+||++|+.+|..++||.|+++|||||||++||+ +|++++|+++++.|+.++.. .|.+..|..|+..+.++
T Consensus 148 rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~-------~G~~~~~~~a~~~~~~~ 220 (239)
T cd04261 148 RGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMAS-------LGAKVLHPRSVELAKKY 220 (239)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHh-------ccccccCHHHHHHHHHc
Confidence 34899999999999999999999999999999998 79999999999999988752 25567888999999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|.|+.+|+ .||+|.
T Consensus 221 ~i~i~I~n~~~~~----------~gt~i~ 239 (239)
T cd04261 221 GVPLRVLSSFSEE----------PGTLIT 239 (239)
T ss_pred CCeEEEecCCCCC----------CCcEeC
Confidence 9999999998882 599884
|
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and |
| >PRK12352 putative carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=147.20 Aligned_cols=101 Identities=22% Similarity=0.279 Sum_probs=88.1
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGV 111 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv 111 (462)
+|.|..|+.+|..|+||+|||||||+|||.++| +|++++|++++..|++++... .....|||.+|+++|..+++.|+
T Consensus 214 InaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~-~~~~~li~~lt~~e~~~li~~--g~i~~GgM~pKl~aA~~al~~Gv 290 (316)
T PRK12352 214 IDKDLSTALLAREIHADILVITTGVEKVCIHFG-KPQQQALDRVDIATMTRYMQE--GHFPPGSMLPKIIASLTFLEQGG 290 (316)
T ss_pred ecHHHHHHHHHHHhCCCEEEEEeCchhhccCCC-CCCcccccccCHHHHHHHHhc--CCcCCCCCHHHHHHHHHHHHhCC
Confidence 569999999999999999999999999998754 467889999999999888631 23457999999999999999998
Q ss_pred -eEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 112 -SVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 112 -~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
++||++ ++.+.++|+|+ .||+|..
T Consensus 291 ~~v~I~~---~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 291 KEVIITT---PECLPAALRGE-TGTHIIK 315 (316)
T ss_pred CeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence 899996 77799999998 8999863
|
|
| >cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-14 Score=140.27 Aligned_cols=114 Identities=23% Similarity=0.242 Sum_probs=92.4
Q ss_pred hhhhHHHhHHHHHHH-Hh---c---------CC---ccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcc
Q psy11677 9 CEQHFLTNFNELFRS-IF---Q---------KL---ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKM 71 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~-~~---~---------~e---i~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~Akl 71 (462)
......+.++++++. +. . ++ +.+|++|++|+.+|..++||.|+++|||||||++||+ +|++++
T Consensus 97 ~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~ 176 (227)
T cd04234 97 IIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARL 176 (227)
T ss_pred HHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceE
Confidence 444556667777777 41 1 11 2346899999999999999999999999999999998 799999
Q ss_pred cccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 72 IWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 72 I~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|+++++.|+.++.. .|.++| +..|+..+.++|++++|.|+.+|+ ..||+|.
T Consensus 177 i~~i~~~e~~~l~~-----~G~~~~--~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~ 227 (227)
T cd04234 177 IPEISYDEALELAY-----FGAKVL--HPRAVEPARKANIPIRVKNTFNPE---------APGTLIT 227 (227)
T ss_pred cCcCCHHHHHHHHh-----CCcccc--CHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence 99999999988752 346666 467999999999999999999885 3599874
|
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd |
| >PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-14 Score=137.58 Aligned_cols=103 Identities=32% Similarity=0.397 Sum_probs=88.2
Q ss_pred HHHhHHHHHHHHh------------cCCc---cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCccccccc
Q psy11677 13 FLTNFNELFRSIF------------QKLI---SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYT 76 (462)
Q Consensus 13 ~~~~~~e~~~~~~------------~~ei---~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~ 76 (462)
..+.++++++.+. .+++ ..+++|++|+.+|..++|++|+|+|||||||+.||+ +|++++|++++
T Consensus 123 ~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~ 202 (242)
T PF00696_consen 123 DKEAIRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELS 202 (242)
T ss_dssp HHHHHHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEE
T ss_pred HHHHHHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEee
Confidence 3566777777551 2233 678999999999999999999999999999999998 79999999999
Q ss_pred HHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc-CCeEEEEe
Q psy11677 77 SEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR-GVSVVICN 117 (462)
Q Consensus 77 ~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~-Gv~v~I~s 117 (462)
+.|+.++.. .+.+++|||..|+.+|..+++. +++|+|+|
T Consensus 203 ~~e~~~l~~--~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 203 YDEAEELAS--KSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp HHHHHHHHH--HTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 999998763 4568999999999999998888 55999986
|
In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A .... |
| >PRK09411 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-14 Score=142.27 Aligned_cols=98 Identities=26% Similarity=0.345 Sum_probs=84.9
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
-++|+|.+|+.+|..++||+|+|+|||||||++ |.+|++++|++++..++..+.. .+|||.+|+++|..+.+.
T Consensus 198 ~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n-~~~p~~~~I~~it~~e~~~~~~------~~GgM~pKVeAA~~~v~~ 270 (297)
T PRK09411 198 AVIDKDLAAALLAEQINADGLVILTDADAVYEN-WGTPQQRAIRHATPDELAPFAK------ADGAMGPKVTAVSGYVRS 270 (297)
T ss_pred EecCHHHHHHHHHHHhCCCEEEEEeCchhhccC-CCCCCCcCCCCcCHHHHHHhcc------CCCCcHHHHHHHHHHHHh
Confidence 378999999999999999999999999999985 4578899999999999877642 589999999999887776
Q ss_pred -CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 -GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 -Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|.+++|.+ ++.+.+++.|+ .||+|.
T Consensus 271 ~g~~a~I~~---l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 271 RGKPAWIGA---LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred CCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence 55888864 66788999998 799985
|
|
| >TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-13 Score=142.90 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=98.0
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++.++++++ ..++...|.|++|+.+|.+|+|++|||+|||+|||++ ++++|++++..++++
T Consensus 150 ~~~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~-----~g~~i~~i~~~~~~~ 224 (429)
T TIGR01890 150 TEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDP-----DGTLAAELSPQEVES 224 (429)
T ss_pred HHHHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC-----CCCCcccCCHHHHHH
Confidence 445566666652 2345668999999999999999999999999999974 478999999988887
Q ss_pred hhhcCCCCCCCCc-chHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCccccccccCC
Q psy11677 83 VQFGQKSKVGTGG-MDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 83 l~~~~~s~~gtGG-M~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~~ 141 (462)
+... ..|| |.+|+++|..|++.|+ +++|++|+.|+. +.++|+.++.||+|..+.
T Consensus 225 l~~~-----~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~ 281 (429)
T TIGR01890 225 LAER-----LGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEA 281 (429)
T ss_pred HHHh-----ccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccc
Confidence 7632 2345 5999999999999998 899999999998 667889999999998765
|
This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate. |
| >TIGR00761 argB acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-13 Score=132.06 Aligned_cols=95 Identities=32% Similarity=0.344 Sum_probs=80.0
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++++++.++ ..++.+.|+|++|+.+|..++||+|+|+|||||||++|| +++|++++..|+.+
T Consensus 125 ~~~i~~~l~~g~IPVi~~~~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~----~~~i~~i~~~e~~~ 200 (231)
T TIGR00761 125 KALLEALLKAGYIPVISSLALTAEGQALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDG----QSLISEIPLEEIEQ 200 (231)
T ss_pred HHHHHHHHHCCCeEEECCCccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCC----CeeccccCHHHHHH
Confidence 566777777641 335677899999999999999999999999999999875 47999999988888
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEE
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVI 115 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I 115 (462)
+.. ..++||||.+|+++|..+++.|+ ++||
T Consensus 201 l~~---~~~~tggm~~Kl~~a~~a~~~gv~~v~i 231 (231)
T TIGR00761 201 LIE---QGIITGGMIPKVNAALEALRGGVKSVHI 231 (231)
T ss_pred HHH---cCCCCCchHHHHHHHHHHHHcCCCEEEC
Confidence 763 34689999999999999999999 5654
|
This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model. |
| >cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP) | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-13 Score=132.08 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=90.6
Q ss_pred HHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHH-hH
Q psy11677 13 FLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSE-MR 80 (462)
Q Consensus 13 ~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~-e~ 80 (462)
..+.++.+++.++ ..++...|.|++|+.+|..|+|++|+|+|||+|||++ ++++|++++.. +.
T Consensus 119 ~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~-----~g~~i~~i~~~~~~ 193 (248)
T cd04252 119 NKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNETGGLLDG-----TGKKISAINLDEEY 193 (248)
T ss_pred CHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCC-----CCCcccccCHHHHH
Confidence 3455667777762 2334568999999999999999999999999999975 47899999874 56
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHc--CC-eEEEEeCCChhH-HHHHHcCCcccccc
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDR--GV-SVVICNGMQKEA-IKQIVAGRKIGTFF 137 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~--Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I 137 (462)
+++.. +.+.||||.+|++++..+.+. ++ .++|++ ++. +.++|+.++.||+|
T Consensus 194 ~~l~~---~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 194 DDLMK---QPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred HHHHH---cCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCCCCccC
Confidence 56652 347899999999999888887 44 788887 355 67789988999986
|
The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th |
| >cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-13 Score=137.44 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=83.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
.|+||..|+.+|..++||.++++|||||||++||+ .|++++|+++++.|+.++.. .|++..+.+++..+.++
T Consensus 203 rggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~-------~Ga~v~h~~a~~~a~~~ 275 (295)
T cd04259 203 RGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIAT-------MGAKVLHPRCIPPARRA 275 (295)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHH-------cCCcccCHHHHHHHHHC
Confidence 37999999999999999999999999999999998 79999999999999988852 46677888899999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|.|+.+|+ ..||+|.
T Consensus 276 ~ipi~i~~~~~p~---------~~GT~I~ 295 (295)
T cd04259 276 NIPMVVRSTERPE---------LSGTLIT 295 (295)
T ss_pred CCCEEEEeCCCCC---------CCCcEeC
Confidence 9999999999884 5699884
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. |
| >cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-13 Score=132.39 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=78.2
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|++|++|+.+|..|+|+.|+++|||||||++||+ +|++++|++++++|+.++... |--..|..|+..+.+.
T Consensus 153 rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~-------g~~v~~~~a~~~~~~~ 225 (244)
T cd04260 153 RGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQ-------GAKVIHPRAVEIAMQA 225 (244)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHc-------CchhcCHHHHHHHHHc
Confidence 45899999999999999999999999999999998 789999999999999887621 1123567888999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|.|+++|. .||+|.
T Consensus 226 ~i~v~I~~~~~~~----------~gt~i~ 244 (244)
T cd04260 226 NIPIRIRSTMSEN----------PGTLIT 244 (244)
T ss_pred CCeEEEecCCCCC----------CCCEeC
Confidence 9999999998762 589874
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet |
| >PRK05925 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-13 Score=143.85 Aligned_cols=96 Identities=23% Similarity=0.251 Sum_probs=84.3
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
.+|+||+.|+++|..++||.++++|||||||++||+ +|+|++|++++++|+.+++. .++..++++| ...+.+
T Consensus 186 grGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~-~Ga~vl~~~~------~~~a~~ 258 (440)
T PRK05925 186 GRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLAS-FGAKVLHPPM------LKPCVR 258 (440)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHh-CCCCcCCHHH------HHHHHH
Confidence 469999999999999999999999999999999998 89999999999999988763 3566777776 467889
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
+|++++|.|+++|+ ..||+|.+..
T Consensus 259 ~~Ipi~I~~~~~p~---------~~GT~i~~~~ 282 (440)
T PRK05925 259 AGIPIFVTSTFDVT---------KGGTWIYASD 282 (440)
T ss_pred CCCcEEEecCCCCC---------CCccEEecCC
Confidence 99999999999886 4699998643
|
|
| >cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=136.87 Aligned_cols=187 Identities=25% Similarity=0.403 Sum_probs=140.0
Q ss_pred HHHHHHHHHhCCchhhcCchhcHHH--------------------HHHHHhhcc--------cccccccc--CC----CC
Q psy11677 163 LVNSATWALDRGVSVVICNGMQKEA--------------------IKQIVAGRK--------IGTFFTDA--SA----QS 208 (462)
Q Consensus 163 L~~iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~~~~~--------i~t~~a~~--~d----~~ 208 (462)
|..+++.|.++.++|..++..|+.+ ++.+++.++ +|+.+... +. ..
T Consensus 26 L~~~a~~l~~~~~~la~~~~~d~gk~~e~G~~~a~~~~l~~~~~ev~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ 105 (406)
T cd07079 26 LLAIADALEANRDEILEANAKDLAAAREAGLSEALLDRLLLTPERIEAMAEGLRQVAALPDPVGEVLRGWTLPNGLQIEK 105 (406)
T ss_pred HHHHHHHHHhchHHHHHHhhhhHHHHHHcCCCHHHHhHhcCCHHHHHHHHHHHHHHHhcCCCCcccccceeccCccceeE
Confidence 3338999999999999998655421 444455444 11111110 10 12
Q ss_pred CCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHHh----hcCCC----CeEEeec--CHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFTK----MLPRY----PLHSQVS--TREEI 261 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~~----al~~~----~~v~~v~--~r~~~ 261 (462)
++.|+|||++|+... |+.+.. ..+-.|+ ..+++ +|.++ +++|+|+ +++.+
T Consensus 106 ~~~PlGVV~~I~p~~--p~~~~~~~~~ALaaGN~vVlKps~~tp~~~-~~l~~~~~~~l~~aG~P~gvv~~v~g~~~~~~ 182 (406)
T cd07079 106 VRVPLGVIGIIYESR--PNVTVDAAALCLKSGNAVILRGGSEALHSN-RALVEIIQEALEEAGLPEDAVQLIPDTDREAV 182 (406)
T ss_pred EecceEEEEEecCCC--cchHHHHHHHHHHhCCEEEEeCCchhhhHH-HHHHHHHHHHHHHcCCCcccEEEecCCChHHH
Confidence 489999999999755 764322 5556666 66664 44455 9999998 46788
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.++|..+..||+|...||....+.|.+.+ .+||+....|+++++|++|||+++|++-++.+|..+.| .|.+++.
T Consensus 183 ~~~l~~~~~v~~i~fTGS~~~G~~i~~~a-~~pv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~G-----~C~a~~r 256 (406)
T cd07079 183 QELLKLDDYIDLIIPRGGAGLIRFVVENA-TIPVIKHGDGNCHVYVDESADLEMAVRIVVNAKTQRPS-----VCNALET 256 (406)
T ss_pred HHHHcCCCCccEEEeCCCHHHHHHHHHhc-CCCEEeecCCcceEEEeCCCCHHHHHHHHHHcccCCCc-----cccccee
Confidence 99999999999999999999999999988 59999999999999999999999999999999988655 4888888
Q ss_pred hhhcccccccChhhHHH
Q psy11677 342 LADQGEMDVSGLPCLLL 358 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~~~ 358 (462)
+..|+.|...+...|.+
T Consensus 257 v~V~~si~d~f~~~l~~ 273 (406)
T cd07079 257 LLVHRDIAEEFLPKLAE 273 (406)
T ss_pred EEEeHHHHHHHHHHHHH
Confidence 87777775555555444
|
Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1). |
| >cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=130.54 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=88.0
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccH-HhHHhhhhcCCCCCCCCcc---hHHHHHH
Q psy11677 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTS-EMRDTVQFGQKSKVGTGGM---DSKVNSA 103 (462)
Q Consensus 28 ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~-~e~~~l~~~~~s~~gtGGM---~~Kl~AA 103 (462)
++...+.|++|+.+|..|+|++|||+||++|||++ ++++|++++. .|...+. ....++||| .+|++++
T Consensus 168 ~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~-----~g~lI~~l~~~~e~~~li---~~g~i~gGm~~ki~ki~~~ 239 (271)
T cd04236 168 RSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQ-----KHKVLPQVHLPADLPSLS---DAEWLSETEQNRIQDIATL 239 (271)
T ss_pred CEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECC-----CCCCccccCcHHHHHHHH---hCCEEcCCeeechHHHHHH
Confidence 45568899999999999999999999999999974 4789999995 8888775 456889999 9999999
Q ss_pred HHHHHcCCeEEEEeCCChhH-HHHHHcCCcccccc
Q psy11677 104 TWALDRGVSVVICNGMQKEA-IKQIVAGRKIGTFF 137 (462)
Q Consensus 104 ~~a~~~Gv~v~I~sG~~~~~-L~~~l~g~~~GT~I 137 (462)
..++.+|++|+|++ |+. +.++|+..+.||+|
T Consensus 240 l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 240 LNALPSMSSAVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred HHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence 99999999999998 555 88999999999987
|
Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF). |
| >cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.2e-13 Score=133.19 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=82.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
.|++|+.|+.+|..++|+.++++|||||||+.||+ +|++++|+++++.|+.++.. .|++..+..+...+.++
T Consensus 206 RggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~-------~Ga~vlhp~ai~~a~~~ 278 (298)
T cd04244 206 RGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAY-------FGAKVLHPRTVEPAMEK 278 (298)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHh-------CCCcccCHHHHHHHHHc
Confidence 36899999999999999999999999999999998 79999999999999998852 35667777899999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|++++|.|+++|+ ..||+|.
T Consensus 279 ~Ipi~i~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 279 GIPVRVKNTFNPE---------APGTLIT 298 (298)
T ss_pred CCcEEEeeCCCCC---------CCCCEeC
Confidence 9999999999884 5699884
|
The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. |
| >PRK08841 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-12 Score=137.53 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=81.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|++|+.|+.+|..++||.|+++|||||||++||+ .|+|++|+++++.|+.+++. .|.+..+..++..+.++
T Consensus 150 rggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~-------~Ga~vlhp~ai~~a~~~ 222 (392)
T PRK08841 150 RGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMAR-------KGAKVLHLPSVQHAWKH 222 (392)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHh-------cCccccCHHHHHHHHHC
Confidence 46899999999999999999999999999999998 89999999999999988852 25556677899999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
|++++|.|+..+ ..||+|..
T Consensus 223 ~Ipi~i~n~~~~----------~~GT~I~~ 242 (392)
T PRK08841 223 SVPLRVLSSFEV----------GEGTLIKG 242 (392)
T ss_pred CCeEEEEecCCC----------CCCeEEEe
Confidence 999999998765 35999964
|
|
| >PRK00197 proA gamma-glutamyl phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-12 Score=135.06 Aligned_cols=180 Identities=25% Similarity=0.412 Sum_probs=137.9
Q ss_pred HHHHHHhCCchhhcCchhcHHH--------------------HHHHHhhcccccccccc-------------CC----CC
Q psy11677 166 SATWALDRGVSVVICNGMQKEA--------------------IKQIVAGRKIGTFFTDA-------------SA----QS 208 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~~~~~i~t~~a~~-------------~d----~~ 208 (462)
+++.|.++.++|..++..|+++ ++.+++.++ ..+.+ +. ..
T Consensus 35 ~a~~l~~~~~~la~~~~~d~g~~~~~g~~~~~~~~~~~~~~ev~~~~~~~~---~~a~~~~~~g~~~~~~~~~~~~~~~~ 111 (417)
T PRK00197 35 IADALEANAAEILAANAKDLAAARANGLSAAMLDRLLLTEARIEGIAEGLR---QVAALPDPVGEVLDGWTLPNGLRIGR 111 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCHHHHHHHHHHHH---HHhhcCCCccccccceecCCCceEEE
Confidence 8899999999998888766422 344545444 33221 11 12
Q ss_pred CCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHH----hhcCCC----CeEEeec--CHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TREEI 261 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~~~ 261 (462)
.+.|+|||++|+... |+.+.. +.+-.|+ ..++ ++|.++ +++|+|+ +.+.+
T Consensus 112 ~~~PlGVv~~I~p~p--~~~~~~~~~~ALaaGN~vVlKPs~~tp~t~-~~l~~l~~~~l~~aGlP~gv~~~v~g~~~~~~ 188 (417)
T PRK00197 112 VRVPLGVIGVIYESR--PNVTVDAAALCLKSGNAVILRGGSEAIHSN-RALVAVIQEALEEAGLPADAVQLVETTDRAAV 188 (417)
T ss_pred EecCceEEEEEcCCC--chHHHHHHHHHHHhCCeEEEecChhhhHHH-HHHHHHHHHHHHHcCcChhhEEEecCCChHHH
Confidence 478999999999754 764322 4455666 6655 445665 8999998 47889
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.++|..+..||.|...||....+.|.+++ ..||+....|++++||++|||+++|++-++.+|.++.|+ |.+...
T Consensus 189 ~~~l~~~~~v~~V~fTGS~~~g~~i~~~a-~~~~~lELGGk~p~IV~~dAdl~~Aa~~iv~~~~~n~G~-----C~a~~r 262 (417)
T PRK00197 189 GELLKLDGYVDVIIPRGGAGLIRRVVENA-TVPVIEHGDGICHIYVDESADLDKALKIVLNAKTQRPSV-----CNALET 262 (417)
T ss_pred HHHhccCCCccEEEecCCHHHHHHHHHhc-CCCEEeecCCcceEEEeCCCCHHHHHHHHHHhccCCCcc-----cccceE
Confidence 99999999999999999999999999988 599999999999999999999999999999999997765 777777
Q ss_pred hhhcccccccChhhHH
Q psy11677 342 LADQGEMDVSGLPCLL 357 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~~ 357 (462)
+..|..|...+.+.|.
T Consensus 263 v~V~~~i~d~f~~~l~ 278 (417)
T PRK00197 263 LLVHEAIAEEFLPKLA 278 (417)
T ss_pred EEEEHHHhHHHHHHHH
Confidence 7777776555555443
|
|
| >cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=131.15 Aligned_cols=91 Identities=23% Similarity=0.388 Sum_probs=78.4
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|+||+.|+.+|..++||.++++|||||||++||+ +|++++|+++++.|+.++.. .|..-|.++ +...+.++|
T Consensus 202 ggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~-----~Gakvl~p~--ai~~a~~~~ 274 (293)
T cd04243 202 GGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAY-----FGAKVLHPR--TIQPAIRKN 274 (293)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHh-----CCCcccCHH--HHHHHHHCC
Confidence 6789999999999999999999999999999998 89999999999999988752 233344543 667889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
++++|.|+.+|+ ..||+|.
T Consensus 275 i~i~i~~~~~p~---------~~GT~I~ 293 (293)
T cd04243 275 IPIFIKNTFNPE---------APGTLIS 293 (293)
T ss_pred CcEEEecCCCCC---------CCCCEeC
Confidence 999999999884 5699884
|
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK- |
| >TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-12 Score=130.00 Aligned_cols=92 Identities=25% Similarity=0.323 Sum_probs=80.5
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcch-HHHHHHHHHHHc
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMD-SKVNSATWALDR 109 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~-~Kl~AA~~a~~~ 109 (462)
|+||+.|+.+|..++|+.++++|||||||++||+ .|++++|+++++.|+.+++ ..||. .+..++..+.++
T Consensus 179 GgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela--------~~Gakvlhp~a~~~a~~~ 250 (327)
T TIGR02078 179 GGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAA--------KLGMKALQWKAADLAKEY 250 (327)
T ss_pred CChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHH--------HCCchhhHHHHHHHHHHC
Confidence 4789999999999999999999999999999998 8999999999999987664 24674 678899999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
|++++|.|.+.| ..||+|....
T Consensus 251 ~Ipi~I~~t~~~----------~~GT~I~~~~ 272 (327)
T TIGR02078 251 KIPVLFGRTRDW----------RMGTLISNRS 272 (327)
T ss_pred CCeEEEEeCCCc----------CCCcEEecCC
Confidence 999999998766 2599997543
|
This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between. |
| >cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-12 Score=122.86 Aligned_cols=90 Identities=27% Similarity=0.387 Sum_probs=74.7
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
++++|++|+++|..++|++|+++|||||||++ ++++|++++..++.. .+.|.. .+++.+.++|
T Consensus 113 ~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~-----da~~i~~i~~~e~~~----------~~~id~--~~~~~~~~~g 175 (203)
T cd04240 113 EVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEK-----DGKLVNEIAAAELLG----------ETSVDP--AFPRLLTKYG 175 (203)
T ss_pred ccCHHHHHHHHHHHcCCCEEEEEeCCccccCC-----CCcCccccCHHHhCC----------CCeehh--hHHHHHHhCC
Confidence 47999999999999999999999999999986 389999999876532 122211 2344567889
Q ss_pred CeEEEEeCCChhHHHHHHcCC-cccccc
Q psy11677 111 VSVVICNGMQKEAIKQIVAGR-KIGTFF 137 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~-~~GT~I 137 (462)
++++|++|+.|+.|.+++.|+ ..||+|
T Consensus 176 i~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 176 IRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred CeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 999999999999999999998 789986
|
Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily. |
| >cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-12 Score=128.84 Aligned_cols=91 Identities=23% Similarity=0.368 Sum_probs=77.3
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|.+|+++|..++||.++++|||||||++||+ +|+|++|+++++.|+.++. ..|+.-+.++ +...+.++|
T Consensus 203 GGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~-----~~Gakv~h~~--~~~~a~~~~ 275 (294)
T cd04257 203 NGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELS-----YFGAKVLHPK--TIQPVAKKN 275 (294)
T ss_pred CchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHH-----hCCCcccCHH--HHHHHHHCC
Confidence 6789999999999999999999999999999998 8999999999999998875 2333334443 555889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
++++|.|+.+|+ ..||+|.
T Consensus 276 Ipi~i~~~~~p~---------~~GT~I~ 294 (294)
T cd04257 276 IPILIKNTFNPE---------APGTLIS 294 (294)
T ss_pred CCEEEeeCCCCC---------CCCCEeC
Confidence 999999999884 5699884
|
These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act |
| >PRK15398 aldehyde dehydrogenase EutE; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-12 Score=135.11 Aligned_cols=138 Identities=20% Similarity=0.174 Sum_probs=109.0
Q ss_pred CCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHh----hcCCC----CeEEeec--CHHHH
Q psy11677 210 GTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTK----MLPRY----PLHSQVS--TREEI 261 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~----al~~~----~~v~~v~--~r~~~ 261 (462)
+.|+||+++|++.- .|-.+ +.+++-+|+ ..+++ +|.++ +++++|+ +++..
T Consensus 127 ~~P~GVV~~I~PwN-~P~~~~~~~ia~ALaaGN~VVlKps~~tp~t~-~~l~~ll~~~l~eaGlP~gvv~vv~g~~~~~~ 204 (465)
T PRK15398 127 YAPFGVIGAVTPST-NPTETIINNAISMLAAGNSVVFSPHPGAKKVS-LRAIELLNEAIVAAGGPENLVVTVAEPTIETA 204 (465)
T ss_pred ecccEEEEEeeCCC-CchHHHHHHHHHHHHhCCcEEEECCccchHHH-HHHHHHHHHHHHHcCCCCCeEEEecCCCHHHH
Confidence 58999999999863 25321 117777888 77774 44444 9999997 57777
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
..|++..+ ||.|+++||....+.|.+ + ..|++..+.|+||+||++|||+++|++.++++|..+ ....|.+.+.
T Consensus 205 ~~L~~~~~-vd~I~fTGS~~~G~~v~~-~-~k~~~~elGGk~p~IV~~dADld~Aa~~i~~g~~~n----~GQ~C~A~~r 277 (465)
T PRK15398 205 QRLMKHPG-IALLVVTGGPAVVKAAMK-S-GKKAIGAGAGNPPVVVDETADIEKAARDIVKGASFD----NNLPCIAEKE 277 (465)
T ss_pred HHHHcCCC-ccEEEeeCCHHHHHHHHH-c-CCceeeecCCCceEEEecCCCHHHHHHHHHHhcccC----CCCcCCCCce
Confidence 77887654 999999999999999999 4 599999999999999999999999999999999875 4457887777
Q ss_pred hhhcccccccChhhH
Q psy11677 342 LADQGEMDVSGLPCL 356 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~ 356 (462)
+..++.|...+.+.+
T Consensus 278 vlV~~si~d~f~~~l 292 (465)
T PRK15398 278 VIVVDSVADELMRLM 292 (465)
T ss_pred EEEeHHHHHHHHHHH
Confidence 777776654443333
|
|
| >PRK07431 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-12 Score=139.64 Aligned_cols=95 Identities=22% Similarity=0.282 Sum_probs=82.6
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|++|+.|+.+|..++||.|+++|||||||++||+ .|++++|+++++.|+.++. ..|.++|. ..++..+.++
T Consensus 152 rggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~-----~~G~~v~~--~~a~~~~~~~ 224 (587)
T PRK07431 152 RGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELA-----SLGASVLH--PRAVEIARNY 224 (587)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHH-----hCCCceEh--HHHHHHHHHc
Confidence 45689999999999999999999999999999998 7999999999999998885 25678887 5699999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
|++++|.|+.. +..||+|.++..
T Consensus 225 ~i~i~i~~~~~----------~~~GT~i~~~~~ 247 (587)
T PRK07431 225 GVPLVVRSSWS----------DAPGTLVTSPPP 247 (587)
T ss_pred CCcEEEecCCC----------CCCCeEEEeCCc
Confidence 99999999872 235999986543
|
|
| >PRK06635 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-12 Score=133.44 Aligned_cols=94 Identities=23% Similarity=0.266 Sum_probs=81.5
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
.+|++|++|+.+|..++||.|+++|||||||++||+ +|++++|+++++.|+.++.. .|.+..+..++..+.+
T Consensus 149 ~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~-------~g~~~~~~~a~~~~~~ 221 (404)
T PRK06635 149 GRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELAS-------LGAKVLHPRSVEYAKK 221 (404)
T ss_pred CCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHH-------cCCcccCHHHHHHHHH
Confidence 346899999999999999999999999999999998 79999999999999988852 2445677789999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
.|++++|.|++.+ ..||+|...
T Consensus 222 ~~i~~~i~~~~~~----------~~gT~i~~~ 243 (404)
T PRK06635 222 YNVPLRVRSSFSD----------NPGTLITGE 243 (404)
T ss_pred cCceEEEEcCCCC----------CCCCEEeeC
Confidence 9999999998754 359999754
|
|
| >cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.5e-12 Score=125.86 Aligned_cols=92 Identities=25% Similarity=0.306 Sum_probs=79.4
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
+|+||..|+.+|..++|+.++++|||||||+.||+ +|++++|+++++.|+.+++. .|..-|.++ +...+.+.
T Consensus 200 rggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~-----~Gakvlhp~--a~~~~~~~ 272 (292)
T cd04258 200 RGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMAT-----FGAKVLHPA--TLLPAIRK 272 (292)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHH-----CCCcccCHH--HHHHHHHc
Confidence 48899999999999999999999999999999998 89999999999999998852 333445554 67788999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+++++|.|..+|+ ..||+|.
T Consensus 273 ~ipi~i~~~~~p~---------~~GT~I~ 292 (292)
T cd04258 273 NIPVFVGSSKDPE---------AGGTLIT 292 (292)
T ss_pred CCcEEEEeCCCCC---------CCCceeC
Confidence 9999999998874 5699884
|
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. |
| >cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-12 Score=131.67 Aligned_cols=162 Identities=21% Similarity=0.179 Sum_probs=121.2
Q ss_pred CCCceeeEEEEeCCCCcccccc------------------cccccchHHHHH----hhcCCC----CeEEeec--CHHHH
Q psy11677 210 GTPVEVLAEIWKNETLNTTVPK------------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TREEI 261 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~~~ 261 (462)
+.|+|||++|++.- .|-.+.- .++-+|+ ..++ +++.++ +++|+|+ +++..
T Consensus 95 ~~PlGVV~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKpse~tp~t~-~~l~~l~~~~~~~aGlP~gvv~~v~g~~~~~~ 172 (429)
T cd07121 95 YAPFGVIGAITPST-NPTETIINNSISMLAAGNAVVFNPHPGAKKVS-AYAVELINKAIAEAGGPDNLVVTVEEPTIETT 172 (429)
T ss_pred EcccceEEEEccCC-CchhHHHHHHHHHHHcCCCEEEECCccchhHH-HHHHHHHHHHHHHcCCCcceEEEecCCChHHH
Confidence 68999999999763 3642111 7777888 7776 444554 9999998 47777
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
..|++.++ ||.|.++||....+.|.++ ..|++..+.|++++||++|||+++|++.++.++..+ ....|.+.+.
T Consensus 173 ~~L~~~~~-v~~I~fTGs~~~g~~v~~~--~k~~~lelGGk~p~iV~~dADld~Aa~~i~~~~~~n----~GQ~C~a~~r 245 (429)
T cd07121 173 NELMAHPD-INLLVVTGGPAVVKAALSS--GKKAIGAGAGNPPVVVDETADIEKAARDIVQGASFD----NNLPCIAEKE 245 (429)
T ss_pred HHHHcCCC-ccEEEeeCCHHHHHHHHhC--CCceEeecCCCceEEEecCCCHHHHHHHHHhccccc----CCCCCCccce
Confidence 78887664 9999999999999999987 489999999999999999999999999999988774 4557777777
Q ss_pred hhhcccccccChhhHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy11677 342 LADQGEMDVSGLPCLLLFIRLGSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLL 396 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L 396 (462)
+..++.|. .+.+.+|.+.+.+ ..+.++.++++..+.+..
T Consensus 246 v~V~~~i~---d~f~~~L~~~~~~-------------~i~~~~~~~v~~~i~~a~ 284 (429)
T cd07121 246 VIAVDSVA---DYLIAAMQRNGAY-------------VLNDEQAEQLLEVVLLTN 284 (429)
T ss_pred EEEeHHHH---HHHHHHHHHCCCE-------------EcCHHHHHHHHHhhcccC
Confidence 77766664 3444445544321 355666666655554443
|
Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source. |
| >TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-12 Score=133.24 Aligned_cols=92 Identities=29% Similarity=0.348 Sum_probs=80.8
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|++|+.|+.+|..++|+.|+++|||||||++||+ +|++++|+++++.|+.++.. .|....+.+++..|.+++
T Consensus 152 g~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~-------~G~~v~~~~a~~~a~~~~ 224 (401)
T TIGR00656 152 GGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELAT-------FGAKVLHPRTVEPAMRSG 224 (401)
T ss_pred CcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHH-------cCCcccCHHHHHHHHHCC
Confidence 5789999999999999999999999999999998 79999999999999998862 133455667999999999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
++++|.|+.+|+ .||+|.+.
T Consensus 225 i~i~i~~~~~~~----------~gT~I~~~ 244 (401)
T TIGR00656 225 VPIEVRSSFDPE----------EGTLITNS 244 (401)
T ss_pred CeEEEEECCCCC----------CCeEEEeC
Confidence 999999999883 49999754
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. |
| >cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=129.46 Aligned_cols=190 Identities=21% Similarity=0.139 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHhCCchhhcCchhcHHH-------------------HHHHHhhcccccccccc---------CC----C
Q psy11677 160 MEILVNSATWALDRGVSVVICNGMQKEA-------------------IKQIVAGRKIGTFFTDA---------SA----Q 207 (462)
Q Consensus 160 s~~L~~iA~aL~~~~~~IL~AN~~D~~~-------------------~~~~~~~~~i~t~~a~~---------~d----~ 207 (462)
...|..+++.|.++.+++.+++..|.-+ +..+++.++ ..+.. ++ .
T Consensus 19 ~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~~~~~~~~~~~~~~~ev~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~ 95 (397)
T cd07077 19 DLIINAIANALYDTRQRLASEAVSERGAYIRSLIANWIAMMGCSESKLYKNIDTER---GITASVGHIQDVLLPDNGETY 95 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHhCCcHHHHHHHHHHHH---HHHHhcCcccceEecCCCceE
Confidence 3344558888889999998888887762 444454444 33211 11 1
Q ss_pred CCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHH----hhcCCC---CeEEeec--CHHHH
Q psy11677 208 SGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFT----KMLPRY---PLHSQVS--TREEI 261 (462)
Q Consensus 208 ~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~----~al~~~---~~v~~v~--~r~~~ 261 (462)
..+.|+||+++|++.. .|-.... +++-.|+ ..+. +++... +++++++ +++..
T Consensus 96 ~~~~P~Gvv~~i~p~N-~P~~~~~~~~~aL~aGN~vilKps~~~p~~~-~~l~~~~~~~~~~g~p~~~v~~v~~~~~~~~ 173 (397)
T cd07077 96 VRAFPIGVTMHILPST-NPLSGITSALRGIATRNQCIFRPHPSAPFTN-RALALLFQAADAAHGPKILVLYVPHPSDELA 173 (397)
T ss_pred EEEecceEEEEEeCCC-CchHHHHHHHHHHHcCCcEEEEcCcchhhHH-HHHHHHHHHHhhcCCCCceEEEecCCCHHHH
Confidence 2589999999999877 3432111 5666777 7766 333322 8999997 56667
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
..|++..+ ||+|+.+||...++.+.+++..+|++.++.|++++|||++||+++|++.+++++..+ |= .|.+...
T Consensus 174 ~~l~~~~~-vd~v~ftGs~~~~~~v~~~~~~~~~~~~~gg~~~~iv~~dad~~~a~~~~~~~~~~~-GQ----~C~a~~~ 247 (397)
T cd07077 174 EELLSHPK-IDLIVATGGRDAVDAAVKHSPHIPVIGFGAGNSPVVVDETADEERASGSVHDSKFFD-QN----ACASEQN 247 (397)
T ss_pred HHHHcCCC-CCEEEecCCHHHHHHHHHcCCCCceEEecCCcceEEEcCCCCHHHHHHHHHHhhccC-Cc----cCCCCeE
Confidence 77887766 999999999999999999874489999999999999999999999999999999996 54 4666666
Q ss_pred hhhcccccccChhhHHHHH
Q psy11677 342 LADQGEMDVSGLPCLLLFI 360 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~ 360 (462)
+..|+.|...+.+.|.+.+
T Consensus 248 v~V~~~i~d~~~~~l~~~~ 266 (397)
T cd07077 248 LYVVDDVLDPLYEEFKLKL 266 (397)
T ss_pred EEEehhhhHHHHHHHHHHH
Confidence 6666655444444444433
|
The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group. |
| >PRK06291 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-12 Score=135.83 Aligned_cols=95 Identities=23% Similarity=0.299 Sum_probs=84.8
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
.+|++|+.|+.+|..++||.++++|||||||++||+ +|++++|+++++.|+.++.. .|.+..+..++..+.+
T Consensus 209 grggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~-------~G~~v~~~~a~~~~~~ 281 (465)
T PRK06291 209 GRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSY-------FGAKVLHPRTIEPAME 281 (465)
T ss_pred cCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHh-------CCCcccCHHHHHHHHH
Confidence 346999999999999999999999999999999998 79999999999999988742 3567788889999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
+|++++|.|+.+|+ ..||+|...
T Consensus 282 ~~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 282 KGIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred cCCcEEEecCCCCC---------CCceEEEec
Confidence 99999999999883 569999754
|
|
| >cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-12 Score=126.81 Aligned_cols=91 Identities=27% Similarity=0.325 Sum_probs=80.7
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..++|+.+.++|||||||++||+ .|+|+.|+++++.|+.+++ ..|..-|.++ +...+.+++
T Consensus 197 ggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela-----~~GakVlhp~--ai~~a~~~~ 269 (288)
T cd04245 197 GGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELS-----YAGFSVFHDE--ALIPAIEAG 269 (288)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHH-----HCCCcccCHH--HHHHHHHCC
Confidence 5899999999999999999999999999999998 8999999999999999885 2455557776 778899999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
++++|.|..+|+ ..||+|.
T Consensus 270 Ipi~v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 270 IPINIKNTNHPE---------APGTLIV 288 (288)
T ss_pred CcEEEeeCCCCC---------CCCceeC
Confidence 999999998885 5699874
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. |
| >cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-12 Score=127.28 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=81.0
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|..|+++|..++|+.++++|||||||++||+ +|++++|+++++.|+.+++. .|..-++++ +...+.+.+
T Consensus 213 gGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~-----~GakVlHp~--ti~pa~~~~ 285 (306)
T cd04247 213 GYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTY-----YGSEVIHPF--TMEQVIKAR 285 (306)
T ss_pred CchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHh-----CcCcccCHH--HHHHHHHcC
Confidence 7899999999999999999999999999999998 89999999999999998852 333445664 777889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
|+++|.|..+|+ ..||+|.++
T Consensus 286 Ipi~i~nt~~P~---------~~GT~I~~~ 306 (306)
T cd04247 286 IPIRIKNVENPR---------GEGTVIYPD 306 (306)
T ss_pred CcEEEecCCCCC---------CCCcEEcCC
Confidence 999999998874 569999763
|
Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. |
| >PRK04531 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=130.09 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=87.8
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccH-HhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTS-EMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~-~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
..|.|++|+.+|..|+|++|||+|||+|||+. ++++|++++. .+...+.. +...+|||..|+++|..+++.
T Consensus 147 NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~-----~g~~i~~i~~~~e~~~l~~---~~~vtgGM~~KL~~a~~al~~ 218 (398)
T PRK04531 147 NINADVAANELVSALQPYKIIFLTGTGGLLDA-----DGKLISSINLSTEYDHLMQ---QPWINGGMKLKLEQIKELLDR 218 (398)
T ss_pred EECHHHHHHHHHHHcCCCEEEEEECCCCccCC-----CCCCcccCCHHHHHHHHHh---cCCCCccHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999975 4789999996 45555542 356899999999999999975
Q ss_pred CCeEEEEeCCChhH-HHHHHcCCccccccccCCC
Q psy11677 110 GVSVVICNGMQKEA-IKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 110 Gv~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~~~ 142 (462)
..+++++++..|+. +.++|+.++.||+|.....
T Consensus 219 ~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~~ 252 (398)
T PRK04531 219 LPLESSVSITSPSDLAKELFTHKGSGTLVRRGER 252 (398)
T ss_pred CCcEEEEEecCCCHHHHHHccCCCCCeEEecCCc
Confidence 45788888888888 5668888889999998765
|
|
| >cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-12 Score=135.59 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=101.4
Q ss_pred CCCCceeeEEEEe-CCCCcccc-c-----------------ccccccchHHHHH----hhcCCC----CeEEeecCHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTV-P-----------------KKHAKTSQCKYFT----KMLPRY----PLHSQVSTREEI 261 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~-~-----------------~~ea~~sn~~~l~----~al~~~----~~v~~v~~r~~~ 261 (462)
++.|+||+++|++ .. |..+ . .+++-.|+ ..++ ++|+++ +++|+|+....+
T Consensus 130 ~~~P~GVv~~I~pwN~--P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~-~~l~~~~~~al~~~glP~gvv~~v~g~~~~ 206 (478)
T cd07086 130 QWNPLGVVGVITAFNF--PVAVPGWNAAIALVCGNTVVWKPSETTPLTA-IAVTKILAEVLEKNGLPPGVVNLVTGGGDG 206 (478)
T ss_pred EEecceeEEEECCCCc--HHHHHHHHHHHHHHcCCeEEEECCCcchHHH-HHHHHHHHHhhhccCCCccceEEEecCchh
Confidence 4799999999997 55 7521 1 16677777 6666 777766 999999943338
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKA 338 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~ 338 (462)
.++|..+..||+|.++||...-+.|.+.+ .+.++++.| |++++||++|||+++|++.++.+|+.+.|- .|.+
T Consensus 207 ~~~L~~~~~vd~v~fTGs~~~g~~i~~~aa~~~~~~~lElG-G~~p~iV~~dAdl~~Aa~~i~~~~~~~~GQ----~C~a 281 (478)
T cd07086 207 GELLVHDPRVPLVSFTGSTEVGRRVGETVARRFGRVLLELG-GNNAIIVMDDADLDLAVRAVLFAAVGTAGQ----RCTT 281 (478)
T ss_pred HHHHhcCCCCCEEEEECcHHHHHHHHHHHhccCCcEEeecC-CCCcEEEcCCCCHHHHHHHHHHHHHhccCC----CCcC
Confidence 89998889999999999999988876633 125666666 999999999999999999999999998775 3555
Q ss_pred HHHhhhcccc
Q psy11677 339 IYNLADQGEM 348 (462)
Q Consensus 339 ~~~~~~~~~~ 348 (462)
...+..++.|
T Consensus 282 ~~rv~V~~~i 291 (478)
T cd07086 282 TRRLIVHESV 291 (478)
T ss_pred CeEEEEcHHH
Confidence 5555444444
|
ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105). |
| >TIGR00657 asp_kinases aspartate kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.8e-12 Score=132.53 Aligned_cols=94 Identities=26% Similarity=0.283 Sum_probs=82.1
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|++|+.|+.+|..++|+.|+++|||||||++||+ .|++++++++++.|+.++.. .|.+..+..++..+.+.|
T Consensus 191 ggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~-------~G~~v~~~~a~~~~~~~~ 263 (441)
T TIGR00657 191 GGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELAS-------FGAKVLHPRTLEPAMRAK 263 (441)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHh-------cCCcccCHHHHHHHHHcC
Confidence 5799999999999999999999999999999998 79999999999999988852 234556677899999999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
++++|.|+.+|+ ..||+|.+..
T Consensus 264 i~i~i~~~~~~~---------~~GT~I~~~~ 285 (441)
T TIGR00657 264 IPIVVKSTFNPE---------APGTLIVAST 285 (441)
T ss_pred CeEEEecCCCCC---------CCceEEEeCC
Confidence 999999998873 4599998653
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. |
| >cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-12 Score=135.29 Aligned_cols=191 Identities=14% Similarity=0.124 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---- 204 (462)
+......|++|...+.. +++.|.++.++|..++..|.-. +...++.++ ..+.+
T Consensus 21 v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~---~~~~~~~~~ 97 (457)
T cd07090 21 VDLAVKSAKAAQKEWSATSGMERGRILRKAADLLRERNDEIARLETIDNGKPIEEARVDIDSSADCLE---YYAGLAPTL 97 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55556666666554333 8888888888888776544322 222323222 11111
Q ss_pred -------CC----CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC----Ce
Q psy11677 205 -------SA----QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY----PL 251 (462)
Q Consensus 205 -------~d----~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~----~~ 251 (462)
+. ...+.|+|||++|+..- .|-. + +.+++.+|+ ..+.+.+.++ ++
T Consensus 98 ~~~~~~~~~~~~~~~~~~P~GVV~~I~p~N-~P~~~~~~~~~~ALaaGN~Vv~Kps~~~~~~~-~~l~~~~~~aGlP~g~ 175 (457)
T cd07090 98 SGEHVPLPGGSFAYTRREPLGVCAGIGAWN-YPIQIASWKSAPALACGNAMVYKPSPFTPLTA-LLLAEILTEAGLPDGV 175 (457)
T ss_pred CCeeeccCCCceEEEEEeecceEEEECCCc-cHHHHHHHHHHHHHhcCCeeeecCCCcCcHHH-HHHHHHHHHcCCCccc
Confidence 10 12489999999998211 2321 1 116777787 7777888777 99
Q ss_pred EEeecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCC
Q psy11677 252 HSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQG 329 (462)
Q Consensus 252 v~~v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~ 329 (462)
+|+|+....+.+.|-.+..||+|.++||...-+.|.+.+. .+|++....|+|++||++|||+++|++.++.++..+-|
T Consensus 176 ~~~v~g~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~~~lelgG~~p~iV~~dAdl~~Aa~~i~~~~~~~~G 255 (457)
T cd07090 176 FNVVQGGGETGQLLCEHPDVAKVSFTGSVPTGKKVMSAAAKGIKHVTLELGGKSPLIIFDDADLENAVNGAMMANFLSQG 255 (457)
T ss_pred EEEEeCChhhHHHHhcCCCCCEEEEECcHHHHHHHHHHHhccCCceEEecCCCCceEECCCCCHHHHHHHHHHHHHhcCC
Confidence 9999843346666667778999999999998888777652 37999999999999999999999999999999987655
Q ss_pred CCCchhHHHHHHhhhcccc
Q psy11677 330 LNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~ 348 (462)
- .|.+++.+..+..|
T Consensus 256 Q----~C~a~~rv~V~~~i 270 (457)
T cd07090 256 Q----VCSNGTRVFVQRSI 270 (457)
T ss_pred C----CCCCCeEEEEcHHH
Confidence 3 56666666555554
|
NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis. |
| >PRK08210 aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=129.16 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=78.9
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|++|+.|+.+|..|+|+.++++|||||||++||+ .|++++|+++++.|+.++... |--..+..++..+.++|
T Consensus 156 g~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~-------G~~v~~~~a~~~~~~~~ 228 (403)
T PRK08210 156 GGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQ-------GAKVIHPRAVEIAMQAN 228 (403)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHC-------CccccCHHHHHHHHHCC
Confidence 5899999999999999999999999999999998 799999999999999888621 11234456888999999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
++++|.|++.+ ..||+|.+..
T Consensus 229 i~i~i~~~~~~----------~~gT~I~~~~ 249 (403)
T PRK08210 229 IPLRIRSTYSD----------SPGTLITSLG 249 (403)
T ss_pred CeEEEEecCCC----------cCCcEEEecC
Confidence 99999998764 2399997653
|
|
| >cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.2e-12 Score=133.04 Aligned_cols=192 Identities=15% Similarity=0.077 Sum_probs=138.6
Q ss_pred cHHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccc
Q psy11677 148 PVEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGT 199 (462)
Q Consensus 148 ~~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t 199 (462)
.+.+....|++|.+.+.. +|+.|.++.++|......|.-. ++.++..++
T Consensus 37 ~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~~~~~--- 113 (466)
T cd07138 37 DVDRAVAAARRAFPAWSATSVEERAALLERIAEAYEARADELAQAITLEMGAPITLARAAQVGLGIGHLRAAADALK--- 113 (466)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence 356666777777654433 8888888888887766554211 333444333
Q ss_pred cccccCC----CCCCCCceeeEEEEeC-CCCcc-cc-----------------cccccccchHHHHHhhcCCC----CeE
Q psy11677 200 FFTDASA----QSGGTPVEVLAEIWKN-ETLNT-TV-----------------PKKHAKTSQCKYFTKMLPRY----PLH 252 (462)
Q Consensus 200 ~~a~~~d----~~~~~PlGVi~~IyEs-r~~Pn-v~-----------------~~~ea~~sn~~~l~~al~~~----~~v 252 (462)
.+..-.. ...+.|+|||++|++. . |- .+ +.+.+-.|+ ..+.+.+.++ +++
T Consensus 114 ~~~~~~~~~~~~~~~~P~GVv~~I~p~N~--P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~~~-~~l~~~~~~aGlP~g~v 190 (466)
T cd07138 114 DFEFEERRGNSLVVREPIGVCGLITPWNW--PLNQIVLKVAPALAAGCTVVLKPSEVAPLSA-IILAEILDEAGLPAGVF 190 (466)
T ss_pred hccccccCceEEEEEeecceEEEECCCcc--HHHHHHHHHHHHHhcCCEEEEECCCcCcHHH-HHHHHHHHHcCCCCCcE
Confidence 2211110 1258999999999873 4 72 11 116677777 7777888877 899
Q ss_pred Eeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCC
Q psy11677 253 SQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQG 329 (462)
Q Consensus 253 ~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~ 329 (462)
++|+ +.+.+.+.|-.+..||.|.++||....+.|.+.+. ..||+....|+|++||++|||+++|++.++.+|..+-|
T Consensus 191 ~~v~g~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~v~lElgG~~p~iV~~dADl~~aa~~i~~~~~~~~G 270 (466)
T cd07138 191 NLVNGDGPVVGEALSAHPDVDMVSFTGSTRAGKRVAEAAADTVKRVALELGGKSANIILDDADLEKAVPRGVAACFANSG 270 (466)
T ss_pred EEEeCCchhHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhccCCeEEEECCCCCeeEECCCCCHHHHHHHHHHHHHhccC
Confidence 9999 46668788878889999999999999888887653 37888888899999999999999999999999999655
Q ss_pred CCCchhHHHHHHhhhccccc
Q psy11677 330 LNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ 349 (462)
- .|.++..+..++.|.
T Consensus 271 Q----~C~a~~rv~V~~~i~ 286 (466)
T cd07138 271 Q----SCNAPTRMLVPRSRY 286 (466)
T ss_pred C----CCcCCcEEEEeHhHH
Confidence 4 566666666666554
|
The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD. |
| >PRK08373 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=125.92 Aligned_cols=92 Identities=23% Similarity=0.288 Sum_probs=78.9
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|++|+.|+.+|..++|+.+.++|||||||++||+ .|+|++|+++++.|+.+++ .+||..+...|...++.|
T Consensus 189 GGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela--------~~Gakvlhp~ai~~a~~~ 260 (341)
T PRK08373 189 GGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAA--------KLGMKALHWKAIEPVKGK 260 (341)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHH--------HCcChhhhHHHHHHHHcC
Confidence 4789999999999999999999999999999998 8999999999999998875 577877777776655449
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
++++|.|...| ..||+|....
T Consensus 261 Ipi~v~~t~~~----------~~GT~I~~~~ 281 (341)
T PRK08373 261 IPIIFGRTRDW----------RMGTLVSNES 281 (341)
T ss_pred CcEEEecCCCC----------CCCcEEecCC
Confidence 99999987665 3599997643
|
|
| >PRK09084 aspartate kinase III; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-11 Score=127.76 Aligned_cols=93 Identities=25% Similarity=0.288 Sum_probs=78.9
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|++|+.|+.+|..++||.++++|||||||++||+ .|+|++|+++++.|+.+++. .|..-+.+ .+...+.+.|
T Consensus 197 ggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~-----~Ga~vlh~--~~~~~~~~~~ 269 (448)
T PRK09084 197 GGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMAT-----FGAKVLHP--ATLLPAVRSN 269 (448)
T ss_pred CchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHh-----CCCcccCH--HHHHHHHHcC
Confidence 6899999999999999999999999999999998 89999999999999988852 22222444 3566788999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
++++|.|+.+|+ ..||+|..+
T Consensus 270 i~i~i~~~~~~~---------~~GT~I~~~ 290 (448)
T PRK09084 270 IPVFVGSSKDPE---------AGGTWICND 290 (448)
T ss_pred CcEEEEeCCCCC---------CCceEEecC
Confidence 999999998884 569999754
|
|
| >TIGR01804 BADH glycine betaine aldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-12 Score=133.57 Aligned_cols=190 Identities=14% Similarity=0.111 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcccccccccc---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIGTFFTDA--- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~t~~a~~--- 204 (462)
+......|++|.+.+.. +++.|.+++++|......|.-. ++.+++.++ ..+.+
T Consensus 37 v~~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~l~---~~a~~~~~ 113 (467)
T TIGR01804 37 VERAIAAARRAQGEWASMTPEERGRILRRIAELIRERNEELAKLETLDTGKTLEETSVADMDDIADVFE---FFAGLADK 113 (467)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHhHHHHHHHHHHHH---HHHHHHHH
Confidence 55556666666554332 8888888888887766544321 233333333 22211
Q ss_pred --------CC----CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC----C
Q psy11677 205 --------SA----QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 205 --------~d----~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~----~ 250 (462)
+. ...+.|+|||++|...- .|-. + +.+++-.|+ ..+++.+.++ +
T Consensus 114 ~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N-~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~-~~l~~~~~~aglP~g 191 (467)
T TIGR01804 114 DGGEIIPLPIPSFSYTIREPLGVCVGIGAWN-YPLQIASWKIAPALAAGNAMVFKPSEITPLTA-LKVAELMEEAGLPDG 191 (467)
T ss_pred hCCccccCCCCceEEEEEeeeeEEEEECCCc-hHHHHHHHHHHHHHhcCCEEEeeCCccCcHHH-HHHHHHHHHcCcCcC
Confidence 10 13479999999994211 1211 1 116667777 7777888887 9
Q ss_pred eEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++|+|+. ...+.+.|-.+..||.|.++||...-+.|.+.+. +.++++.| |++++||++|||++.|++.++.++..
T Consensus 192 v~~~v~g~~~~~~~~L~~~~~v~~V~fTGs~~~g~~v~~~a~~~l~~~~lElG-G~~~~iV~~dADl~~Aa~~i~~~~~~ 270 (467)
T TIGR01804 192 VFNVVLGKGAEVGEPLVNHKDVAKVSFTGGVPTGKKIMAAAADHLKHVTMELG-GKSPLIVFDDADLELAVDQAMNGNFF 270 (467)
T ss_pred cEEEEeCCcHHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHHhcCCcEEEecC-CCCeeEECCCCCHHHHHHHHHHHHHH
Confidence 9999984 3557777777778999999999999888887662 25677777 99999999999999999999999998
Q ss_pred CCCCCCchhHHHHHHhhhcccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+.|= .|.+...+..+..|
T Consensus 271 ~~GQ----~C~a~~rv~V~~~i 288 (467)
T TIGR01804 271 SAGQ----VCSNGTRVFVHNKI 288 (467)
T ss_pred hcCC----CCCCCCEEEEcHHH
Confidence 7764 45555555555444
|
Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171). |
| >cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-12 Score=134.66 Aligned_cols=133 Identities=20% Similarity=0.117 Sum_probs=105.0
Q ss_pred CCCCceeeEEEE-eCCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHH
Q psy11677 209 GGTPVEVLAEIW-KNETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~Iy-Esr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~l 264 (462)
.+.|+||+++|+ +.. |..+.- ..+-+|+ ..|++.+.++ +++|+|+. ...+.+.
T Consensus 142 ~~~P~GVv~~I~p~N~--P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~-~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~ 218 (481)
T cd07141 142 RHEPVGVCGQIIPWNF--PLLMAAWKLAPALACGNTVVLKPAEQTPLTA-LYLASLIKEAGFPPGVVNVVPGYGPTAGAA 218 (481)
T ss_pred EEeceeEEEEEccChh--HHHHHHHHHHHHHHcCCEEEEeCCCCCcHHH-HHHHHHHHHcCcCccceEEEecCchHHHHH
Confidence 478999999999 466 754311 6677788 7788888776 99999983 4456777
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
|-.+..||+|+++||....+.|.+.+. -.||+....|++++||++|||+++|++.++.++..+.|- .|.+++.
T Consensus 219 L~~~~~vd~V~ftGs~~~g~~i~~~aa~~~~~~~~lElGG~~~~iV~~dADl~~A~~~i~~~~~~~~GQ----~C~a~~r 294 (481)
T cd07141 219 ISSHPDIDKVAFTGSTEVGKLIQQAAGKSNLKRVTLELGGKSPNIVFADADLDYAVEQAHEALFFNMGQ----CCCAGSR 294 (481)
T ss_pred HhcCCCCCEEEEECcHHHHHHHHHHhhhhcCceEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC----cccCCeE
Confidence 777888999999999999999977653 156666666999999999999999999999999998885 4666555
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..++.|
T Consensus 295 v~V~~~i 301 (481)
T cd07141 295 TFVQESI 301 (481)
T ss_pred EEEcHHH
Confidence 5555544
|
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. |
| >COG0527 LysC Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-11 Score=128.51 Aligned_cols=95 Identities=25% Similarity=0.340 Sum_probs=82.5
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..++||.+-++|||||||+.||+ .|+|++|+.++++|+.+++ ..|..-+++ ++...+.++|
T Consensus 197 GGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA-----~~GAkVLHp--rav~pa~~~~ 269 (447)
T COG0527 197 GGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELA-----YLGAKVLHP--RAVEPAMRSG 269 (447)
T ss_pred CcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHH-----HCCchhcCH--HHHHHHHhcC
Confidence 7889999999999999999999999999999999 8999999999999999885 233444455 4778899999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
||++|.|..+|+ ..||+|.....
T Consensus 270 Ip~~i~~t~~p~---------~~GTlI~~~~~ 292 (447)
T COG0527 270 IPLRIKNTFNPD---------APGTLITAETE 292 (447)
T ss_pred CcEEEEecCCCC---------CCceEEecCCc
Confidence 999999998884 47999998754
|
|
| >cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-11 Score=128.87 Aligned_cols=171 Identities=20% Similarity=0.160 Sum_probs=125.6
Q ss_pred HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccccccccCC-------------CCCCCCceee
Q psy11677 166 SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTDASA-------------QSGGTPVEVL 216 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~~~d-------------~~~~~PlGVi 216 (462)
+++.|.+++++|..++..|..+ ++.++..++ ++....+ ..++.|+||+
T Consensus 36 ~a~~l~~~~~~l~~~~~~e~Gk~~~e~~~~ev~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv 112 (436)
T cd07135 36 LYWAVKDNEEAIVEALKKDLGRPPFETLLTEVSGVKNDILHMLKNLK---KWAKDEKVKDGPLAFMFGKPRIRKEPLGVV 112 (436)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHH---HhhCCcccCCcccccCCCceEEEeccCcEE
Confidence 8888999998888888766432 444444444 3221110 1247999999
Q ss_pred EEEEe-CCCCcccc------------------cccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhcCCCCccE
Q psy11677 217 AEIWK-NETLNTTV------------------PKKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLSMEKHIDL 273 (462)
Q Consensus 217 ~~IyE-sr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~~~~~iDl 273 (462)
++|++ .. |-.+ +.+++-+|+ ..+.+.+.+. +++|+|+ +.+.+.+|+... ||.
T Consensus 113 ~~I~p~N~--P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~-~~l~~l~~~~lP~g~v~vv~g~~~~~~~l~~~~--vd~ 187 (436)
T cd07135 113 LIIGPWNY--PVLLALSPLVGAIAAGCTVVLKPSELTPHTA-ALLAELVPKYLDPDAFQVVQGGVPETTALLEQK--FDK 187 (436)
T ss_pred EEECCCcc--hHHHHHHHHHHHHHcCCEEEEECCccChHHH-HHHHHHHHHhCCcCEEEEEcCCchhHHHHHhCC--CCE
Confidence 99997 44 6421 116777787 7777544444 9999998 577788888765 999
Q ss_pred EeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 274 IIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 274 iIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
|.++||....+.|.+.+. .+|++....|++++||++|||+++|++.++.+++.+.|- .|.+...+..|+.|
T Consensus 188 v~ftGs~~~g~~i~~~aa~~~~~~~lelgG~~~~iV~~dADl~~aa~~i~~~~~~~~GQ----~C~a~~rv~V~~~i 260 (436)
T cd07135 188 IFYTGSGRVGRIIAEAAAKHLTPVTLELGGKSPVIVTKNADLELAAKRILWGKFGNAGQ----ICVAPDYVLVDPSV 260 (436)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCeEEEccCCCcEEECCCCCHHHHHHHHHHHHhccCCc----eecCCCEEeccHHH
Confidence 999999999888876442 479988888999999999999999999999999997774 45555555555544
|
Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD. |
| >cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-11 Score=130.00 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=101.7
Q ss_pred CCCCceeeEEEEe-CCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~l 264 (462)
++.|+||+++|++ .. |..+.- +.+-.|+ ..+++.|.++ +++|+|+. .+.+.+.
T Consensus 132 ~~~P~GVv~~I~p~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~ 208 (478)
T cd07131 132 RRQPIGVVALITPWNF--PVAIPSWKIFPALVCGNTVVFKPAEDTPACA-LKLVELFAEAGLPPGVVNVVHGRGEEVGEA 208 (478)
T ss_pred EeeceeEEEEECCcCc--HHHHHHHHHHHHHHcCCEEEEECCCcCcHHH-HHHHHHHHhcCcCCCcEEEEecCchHHHHH
Confidence 5899999999997 44 643211 6777788 8888888887 99999994 3447777
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
|..+..||+|+++||...-+.|.+.+ +..|++....|+|++||+++||+++|++.++.++..+-|- .|.+...+
T Consensus 209 L~~~~~vd~V~ftGs~~~g~~i~~~aa~~~~~~~lelgG~~p~iV~~dADl~~Aa~~i~~~~~~~~GQ----~C~a~~rv 284 (478)
T cd07131 209 LVEHPDVDVVSFTGSTEVGERIGETCARPNKRVALEMGGKNPIIVMDDADLDLALEGALWSAFGTTGQ----RCTATSRL 284 (478)
T ss_pred HhcCCCCCEEEEECcHHHHHHHHHHHhhcCCcEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC----CCCCCeEE
Confidence 77777899999999999766654432 1356665566999999999999999999999999886554 46666666
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..|..|
T Consensus 285 ~V~~~i 290 (478)
T cd07131 285 IVHESV 290 (478)
T ss_pred EEehhh
Confidence 666555
|
Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD. |
| >PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-11 Score=137.48 Aligned_cols=94 Identities=20% Similarity=0.254 Sum_probs=85.0
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
.|+||+.|+.+|..++||.++++|||||||++||+ .|++++|+++++.|+.+++. .|++..+..++..+.++
T Consensus 212 rggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~-------~g~~v~~~~a~~~a~~~ 284 (861)
T PRK08961 212 RGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIAT-------TGAKVLHPRSIKPCRDA 284 (861)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHH-------CCCeEECHHHHHHHHHC
Confidence 48999999999999999999999999999999998 79999999999999988852 47788899999999999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
|++++|.|+..|+ ..||+|..+
T Consensus 285 ~i~i~v~~~~~~~---------~~gT~I~~~ 306 (861)
T PRK08961 285 GIPMAILDTERPD---------LSGTSIDGD 306 (861)
T ss_pred CCCEEEEeCCCCC---------CCccEEeCC
Confidence 9999999998873 458888654
|
|
| >PRK09034 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.6e-11 Score=126.13 Aligned_cols=94 Identities=26% Similarity=0.299 Sum_probs=82.6
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..++||.+.++|||||||+.||+ .|+|+.+++++++|+.+++ ..|..-|.++ +...|.+++
T Consensus 197 ggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela-----~~Gakvlhp~--ai~~a~~~~ 269 (454)
T PRK09034 197 GGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELS-----YAGFSVFHDE--ALIPAYRGG 269 (454)
T ss_pred CcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHH-----hCCcccCCHH--HHHHHHHcC
Confidence 7899999999999999999999999999999999 8999999999999999885 2445557775 777889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
++++|.|..+|. ..||+|..+.
T Consensus 270 Ipi~v~~~~~p~---------~~GT~I~~~~ 291 (454)
T PRK09034 270 IPINIKNTNNPE---------DPGTLIVPDR 291 (454)
T ss_pred CCEEEEcCCCCC---------CCccEEEecc
Confidence 999999998773 5699997553
|
|
| >TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-11 Score=129.88 Aligned_cols=191 Identities=15% Similarity=0.112 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccc-----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTD----- 203 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~----- 203 (462)
++.....|++|.+.+.. +++.|.++.++|..++..|.-. +...++.++ ..+.
T Consensus 40 v~~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~---~~~~~~~~~ 116 (488)
T TIGR02299 40 VDRAAKAAKEAFKRWAELKAAERKRYLHKIADLIEQHADEIAVLECLDCGQPLRQTRQQVIRAAENFR---FFADKCEEA 116 (488)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---HHHHhHHHh
Confidence 55666677776664433 8899999999998877665321 222222222 1110
Q ss_pred -----cCC-----CCCCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----Ce
Q psy11677 204 -----ASA-----QSGGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PL 251 (462)
Q Consensus 204 -----~~d-----~~~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~ 251 (462)
++. ..++.|+||+++|+..- .|-. +.. +++-.|. ..+.+++.++ ++
T Consensus 117 ~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N-~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~-~~l~~~~~~aGlP~gv 194 (488)
T TIGR02299 117 MDGRTYPVDTHLNYTVRVPVGPVGLITPWN-APFMLSTWKIAPALAFGNTVVLKPAEWSPLTA-ARLAEIAKEAGLPDGV 194 (488)
T ss_pred cCCccccCCCceEEEEEEecceEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECchhchHHH-HHHHHHHHHcCcChhh
Confidence 110 12479999999997221 2311 100 4444555 5556888887 89
Q ss_pred EEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCC
Q psy11677 252 HSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQ 328 (462)
Q Consensus 252 v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~ 328 (462)
+|+|+. ...+.+.|-.+..||.|.++||...-+.|.+.+ +-+||.....|+|++||++|||+++|++.++.++..+-
T Consensus 195 v~~v~g~~~~~~~~l~~~~~v~~V~fTGS~~~G~~i~~~aa~~l~~~~lElGGknp~iV~~dAdl~~A~~~i~~~~~~~~ 274 (488)
T TIGR02299 195 FNLVHGFGEEAGKALVAHPDVKAVSFTGETATGSIIMRNGADTLKRFSMELGGKSPVIVFDDADLERALDAVVFMIFSFN 274 (488)
T ss_pred eeEEeCCchHHHHHHhcCCCcCEEEEECcHHHHHHHHHHHHhcCCeEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhcc
Confidence 999983 334545566678899999999999999998763 24788888889999999999999999999999998854
Q ss_pred CCCCchhHHHHHHhhhcccc
Q psy11677 329 GLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~ 348 (462)
| ..|.+++.+..|..|
T Consensus 275 G----Q~C~a~~rv~V~~~v 290 (488)
T TIGR02299 275 G----ERCTASSRLLVQESI 290 (488)
T ss_pred C----CCCCCCcEEEEcHHH
Confidence 4 467776666666544
|
This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring. |
| >cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-11 Score=127.63 Aligned_cols=192 Identities=16% Similarity=0.142 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcccccccccc---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIGTFFTDA--- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~t~~a~~--- 204 (462)
+.+....|++|.+.... +++.|.++.++|..++..|.-. +..+++.++ ..+.+
T Consensus 21 v~~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~a~~ev~~~~~~~~---~~~~~~~~ 97 (457)
T cd07108 21 VDRAVAAAKAAFPEWAATPARERGKLLARIADALEARSEELARLLALETGNALRTQARPEAAVLADLFR---YFGGLAGE 97 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 55556666666554333 8889999999888776655421 223333333 22111
Q ss_pred ------C--C----CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---Ce
Q psy11677 205 ------S--A----QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PL 251 (462)
Q Consensus 205 ------~--d----~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~ 251 (462)
+ . ...+.|+||+++|+..- .|-. + +.+++-.|+ ..+++.+.++ ++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N-~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~-~~l~~~~~~~lP~~~ 175 (457)
T cd07108 98 LKGETLPFGPDVLTYTVREPLGVVGAILPWN-APLMLAALKIAPALVAGNTVVLKAAEDAPLAV-LLLAEILAQVLPAGV 175 (457)
T ss_pred hCCceeccCCCeeEEEEeecceEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHhCCcCc
Confidence 1 0 12478999999997322 2321 1 116666777 6666555554 99
Q ss_pred EEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCC
Q psy11677 252 HSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQ 328 (462)
Q Consensus 252 v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~ 328 (462)
+++|+ +...+.+.|-.+..+|.|.++||....+.|.+.+. .+||+.+..|++++||++|||+++|++.++.+|...
T Consensus 176 ~~~v~g~~~~~~~~L~~~~~vd~v~ftGs~~~g~~v~~~aa~~l~~~~lelgG~~~~iV~~dAdl~~Aa~~iv~~~~f~- 254 (457)
T cd07108 176 LNVITGYGEECGAALVDHPDVDKVTFTGSTEVGKIIYRAAADRLIPVSLELGGKSPMIVFPDADLDDAVDGAIAGMRFT- 254 (457)
T ss_pred EEEEeCCchHHHHHHhcCCCcCEEEEECcHHHHHHHHHHHhccCCeEEEECCCCCeeEECCCCCHHHHHHHHHHhhHhh-
Confidence 99998 33335565556667999999999999999988762 379999999999999999999999999999997321
Q ss_pred CCCCchhHHHHHHhhhcccc
Q psy11677 329 GLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~ 348 (462)
|....|.++..+..|+.|
T Consensus 255 --~~GQ~C~a~~rv~V~~~i 272 (457)
T cd07108 255 --RQGQSCTAGSRLFVHEDI 272 (457)
T ss_pred --cCCCCCCCCeEEEEehHH
Confidence 234456666666666554
|
NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD. |
| >cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.8e-11 Score=127.88 Aligned_cols=194 Identities=15% Similarity=0.107 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccc----cccc--
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIG----TFFT-- 202 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~----t~~a-- 202 (462)
+......|++|.+.+.. +++.|.++.++|..++..|.-. +..+++.++.- ..+.
T Consensus 71 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~i~~l~~~~~~~~~~~~~ 150 (518)
T cd07125 71 VDAALAIAAAAFAGWSATPVEERAEILEKAADLLEANRGELIALAAAEAGKTLADADAEVREAIDFCRYYAAQARELFSD 150 (518)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55556667776654332 8899999999998887766311 22222222100 0110
Q ss_pred -ccCCC------CCCCCceeeEEEEeCCCCcc----------------cc--cccccccchHHHHHhhcCCC----CeEE
Q psy11677 203 -DASAQ------SGGTPVEVLAEIWKNETLNT----------------TV--PKKHAKTSQCKYFTKMLPRY----PLHS 253 (462)
Q Consensus 203 -~~~d~------~~~~PlGVi~~IyEsr~~Pn----------------v~--~~~ea~~sn~~~l~~al~~~----~~v~ 253 (462)
.++.+ ..+.|+||+++|-..- .|- |+ +.+.+-.|. ..+++.+.++ ++++
T Consensus 151 ~~~~~~~g~~~~~~~~P~GVV~~I~p~N-~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~-~~l~~ll~eaGlP~gvv~ 228 (518)
T cd07125 151 PELPGPTGELNGLELHGRGVFVCISPWN-FPLAIFTGQIAAALAAGNTVIAKPAEQTPLIA-ARAVELLHEAGVPRDVLQ 228 (518)
T ss_pred ccccCCCCceeEEEEecccEEEEECCcc-hHHHHHHHHHHHHHHcCCEEEEeCCCcCcHHH-HHHHHHHHHcCCCCCcEE
Confidence 12221 2378999999993110 121 11 116666777 7777877776 9999
Q ss_pred eec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC-----CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 254 QVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ-----HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 254 ~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~-----~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
+|+ +.+.+.+.|-.+..||+|.++||....+.|.+++. .+||+....|++++||++|||+++|++.++++|+.+
T Consensus 229 vv~g~~~~~~~~L~~~~~vd~V~ftGs~~~g~~i~~~aa~~~~~~~~v~lElgGk~p~iV~~dADl~~Aa~~iv~g~f~n 308 (518)
T cd07125 229 LVPGDGEEIGEALVAHPRIDGVIFTGSTETAKLINRALAERDGPILPLIAETGGKNAMIVDSTALPEQAVKDVVQSAFGS 308 (518)
T ss_pred EEecCchhhHHHHhcCCCcCEEEEECCHHHHHHHHHHhhhccCCCceEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhc
Confidence 999 46667777777788999999999999999988642 379999999999999999999999999999999998
Q ss_pred CCCCCchhHHHHHHhhhcccc
Q psy11677 328 QGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~ 348 (462)
.|- .|.+...+..+..|
T Consensus 309 sGQ----~C~a~~rv~V~~~i 325 (518)
T cd07125 309 AGQ----RCSALRLLYLQEEI 325 (518)
T ss_pred CCC----CCCCCeEEEEcchh
Confidence 775 35555555555544
|
The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. |
| >cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=123.63 Aligned_cols=191 Identities=14% Similarity=0.090 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhc----CchhcHHH-----------HHHHHhhcc--ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVI----CNGMQKEA-----------IKQIVAGRK--IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~----AN~~D~~~-----------~~~~~~~~~--i~t 199 (462)
+......|++|.+.+.. +++.|.++.++|.. ++.+.+.. ++.++...+ .|
T Consensus 37 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~a~~~~~- 115 (468)
T cd07088 37 ADRAVDAAEAAQKAWERLPAIERAAYLRKLADLIRENADELAKLIVEEQGKTLSLARVEVEFTADYIDYMAEWARRIEG- 115 (468)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 45555666666554332 88888888877775 44444322 333333222 01
Q ss_pred cccccC--C---CCCCCCceeeEEEE-eCCCCccccc------------------ccccccchHHHHHhhcCCC----Ce
Q psy11677 200 FFTDAS--A---QSGGTPVEVLAEIW-KNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PL 251 (462)
Q Consensus 200 ~~a~~~--d---~~~~~PlGVi~~Iy-Esr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~ 251 (462)
.+...+ . ...+.|+||+++|+ +.. |..+. .+++-+|+ ..+++.+.++ ++
T Consensus 116 ~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~--P~~~~~~~~~~AL~aGN~VVlKps~~~p~~~-~~l~~~~~~aglP~gv 192 (468)
T cd07088 116 EIIPSDRPNENIFIFKVPIGVVAGILPWNF--PFFLIARKLAPALVTGNTIVIKPSEETPLNA-LEFAELVDEAGLPAGV 192 (468)
T ss_pred ccccCccccceeEEEEecceeEEEEccCch--HHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHcCcCccc
Confidence 110000 0 13479999999998 566 75321 16677787 7777777776 89
Q ss_pred EEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHH----HhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 252 HSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSI----QQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 252 v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v----~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
+++|+. .+.+.+.|-.+..||+|.++||...-+.| .++. .|++....|++++||++|||+++|++.++.++..
T Consensus 193 v~~v~g~~~~~~~~l~~~~~v~~V~ftGs~~~g~~i~~~aa~~~--~~~~lelGG~~~~iV~~dadl~~aa~~iv~~~~~ 270 (468)
T cd07088 193 LNIVTGRGSVVGDALVAHPKVGMISLTGSTEAGQKIMEAAAENI--TKVSLELGGKAPAIVMKDADLDLAVKAIVDSRII 270 (468)
T ss_pred eEEEecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHHhcC--CcEEEECCCCCeEEECCCCCHHHHHHHHHHHHhc
Confidence 999984 45566666667789999999997755544 4443 5666666699999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHhhhccccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~ 349 (462)
+.|- .|.+...+..|+.|.
T Consensus 271 ~~GQ----~C~a~~rv~V~~~i~ 289 (468)
T cd07088 271 NCGQ----VCTCAERVYVHEDIY 289 (468)
T ss_pred ccCc----CCcCCeEEEEcHHHH
Confidence 8774 466666565555543
|
Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD. |
| >cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-11 Score=128.16 Aligned_cols=192 Identities=15% Similarity=0.078 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHH-H------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcc---------cc
Q psy11677 149 VEVLAENVNLKMEILV-N------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRK---------IG 198 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~-~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~---------i~ 198 (462)
+......|++|.+... . +++.|.++.+++..+...|.-. +..+++.++ -|
T Consensus 21 v~~av~~a~~A~~~~~~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~g 100 (454)
T cd07109 21 VDRAVQAARRAFESGWLRLSPAERGRLLLRIARLIREHADELARLESLDTGKPLTQARADVEAAARYFEYYGGAADKLHG 100 (454)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555566666655433 1 8888888888888777665422 222222222 00
Q ss_pred ccccccCC---CCCCCCceeeEEEE-eCCCCccc-c-----------------cccccccchHHHHHhhcCCC----CeE
Q psy11677 199 TFFTDASA---QSGGTPVEVLAEIW-KNETLNTT-V-----------------PKKHAKTSQCKYFTKMLPRY----PLH 252 (462)
Q Consensus 199 t~~a~~~d---~~~~~PlGVi~~Iy-Esr~~Pnv-~-----------------~~~ea~~sn~~~l~~al~~~----~~v 252 (462)
..+...++ ...+.|+|||++|. ... |-. + +.+.+-+|+ ..+++.+.++ +++
T Consensus 101 ~~~~~~~~~~~~~~~~P~GVv~~I~P~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aGlP~gv~ 177 (454)
T cd07109 101 ETIPLGPGYFVYTVREPHGVTGHIIPWNY--PLQITGRSVAPALAAGNAVVVKPAEDAPLTA-LRLAELAEEAGLPAGAL 177 (454)
T ss_pred cccccCCCceEEEEEeeeeEEEEECCCch--HHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHcCcCccce
Confidence 01110011 13488999999998 445 721 1 116666777 7777888886 899
Q ss_pred Eeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCC
Q psy11677 253 SQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQ 328 (462)
Q Consensus 253 ~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~ 328 (462)
|+|+ +++....|+ .+..||.|...||...-+.|.+.+ +.+|++....|++++||++|||+++|++.++.+++.+.
T Consensus 178 ~~v~g~~~~~~~~L~-~~~~v~~v~ftGs~~~g~~i~~~aa~~~~p~~lElgG~~~~iV~~daDl~~Aa~~i~~~~~~~~ 256 (454)
T cd07109 178 NVVTGLGAEAGAALV-AHPGVDHISFTGSVETGIAVMRAAAENVVPVTLELGGKSPQIVFADADLEAALPVVVNAIIQNA 256 (454)
T ss_pred EEEecCchHHHHHHh-cCCCCCEEEEECCHHHHHHHHHHHhhcCCcEEEECCCCCceEECCCCCHHHHHHHHHHHHHhcc
Confidence 9998 466666666 566799999999999877777654 25899888889999999999999999999999999988
Q ss_pred CCCCchhHHHHHHhhhcccc
Q psy11677 329 GLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~ 348 (462)
|- .|.++..+..++.|
T Consensus 257 GQ----~C~a~~rv~V~~~i 272 (454)
T cd07109 257 GQ----TCSAGSRLLVHRSI 272 (454)
T ss_pred CC----CCccCcEEEEcHHH
Confidence 85 35554444444443
|
Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD. |
| >cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-11 Score=125.90 Aligned_cols=194 Identities=18% Similarity=0.097 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcc----cccccc-
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRK----IGTFFT- 202 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~----i~t~~a- 202 (462)
+.+....|++|...+.. +++.|.++.++|..++..|.-. +...++.++ ......
T Consensus 21 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~i~~~~~~~~~~~~~~~ 100 (455)
T cd07093 21 VDAAVAAAKEAFPGWSRMSPAERARILHKVADLIEARADELALLESLDTGKPITLARTRDIPRAAANFRFFADYILQLDG 100 (455)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhHHHhCC
Confidence 55666667766665443 8888888888887666544321 111111111 000100
Q ss_pred -ccCC--C----CCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC----CeEE
Q psy11677 203 -DASA--Q----SGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY----PLHS 253 (462)
Q Consensus 203 -~~~d--~----~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~----~~v~ 253 (462)
.++. . ..+.|+||+++|+..- .|-. + +.+.+-.|+ ..+.+.+.++ +++|
T Consensus 101 ~~~~~~~~~~~~~~~~P~GVv~~i~p~N-~P~~~~~~~~~~AL~aGN~VIlkps~~~p~~~-~~l~~~l~~aglP~g~v~ 178 (455)
T cd07093 101 ESYPQDGGALNYVLRQPVGVAGLITPWN-LPLMLLTWKIAPALAFGNTVVLKPSEWTPLTA-WLLAELANEAGLPPGVVN 178 (455)
T ss_pred ccccCCCCceEEEEEEeeeEEEEECCCC-hHHHHHHHHHHHHHhcCCEEEeECCCcCcHHH-HHHHHHHHhcCCCccceE
Confidence 0111 1 2379999999998422 2421 1 115666676 7777888877 8999
Q ss_pred eecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 254 QVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 254 ~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+++. ...+.+.|-.+..||+|..+||....++|.+.+. .+||+....|++++||+++||+++|++.++.++..+-|-
T Consensus 179 ~v~g~~~~~~~~L~~~~~i~~V~ftGs~~~g~~v~~~aa~~~~~~~lelgG~~~~iV~~dAdl~~a~~~i~~~~~~~~GQ 258 (455)
T cd07093 179 VVHGFGPEAGAALVAHPDVDLISFTGETATGRTIMRAAAPNLKPVSLELGGKNPNIVFADADLDRAVDAAVRSSFSNNGE 258 (455)
T ss_pred EEecCchHHHHHHhcCCCccEEEEECCHHHHHHHHHHHhhcccceEeecCCCCceEECCCCCHHHHHHHHHHHHHhccCC
Confidence 9983 3346666666677999999999999999988652 589998888999999999999999999999999886554
Q ss_pred CCchhHHHHHHhhhcccc
Q psy11677 331 NPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~ 348 (462)
.|.+...+..++.+
T Consensus 259 ----~C~a~~~v~v~~~i 272 (455)
T cd07093 259 ----VCLAGSRILVQRSI 272 (455)
T ss_pred ----CcCCCceEEEcHHH
Confidence 45555555555444
|
In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone. |
| >cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.1e-11 Score=126.56 Aligned_cols=197 Identities=14% Similarity=0.050 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhcc--ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRK--IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~--i~t 199 (462)
+......|++|.+.+.. +++.|.++.++|..++..|.-. ++.++..++ .+.
T Consensus 20 v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~~~~~~~~ 99 (454)
T cd07101 20 VEAAFARARAAQRAWAARPFAERAAVFLRFHDLVLERRDELLDLIQLETGKARRHAFEEVLDVAIVARYYARRAERLLKP 99 (454)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45555666666554332 8899999999888887766421 122222111 000
Q ss_pred c-c-cccCC----CCCCCCceeeEEEEe-CCCCcc-ccc-----------------ccccccchHHHHHhhcCCC----C
Q psy11677 200 F-F-TDASA----QSGGTPVEVLAEIWK-NETLNT-TVP-----------------KKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 200 ~-~-a~~~d----~~~~~PlGVi~~IyE-sr~~Pn-v~~-----------------~~ea~~sn~~~l~~al~~~----~ 250 (462)
. . ..++. ...+.|+||+++|+. .. |- .+. .+.+-.|+ ..|.+.+.++ +
T Consensus 100 ~~~~~~~~~~~~~~~~~~P~GvV~~I~p~N~--P~~~~~~~~~~ALaaGN~vvlKps~~~p~~~-~~l~~~~~~aglP~g 176 (454)
T cd07101 100 RRRRGAIPVLTRTTVNRRPKGVVGVISPWNY--PLTLAVSDAIPALLAGNAVVLKPDSQTALTA-LWAVELLIEAGLPRD 176 (454)
T ss_pred ccccccCCCCceEEEEEEeccEEEEECCCcc--HHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHcCcCCC
Confidence 0 0 01111 124799999999986 44 62 111 16666677 6777777776 8
Q ss_pred eEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++++|+ .++....|++ .+|.|.++||....+.|.+++. .+||+.+..|++++||++|||+++|++.++.++..
T Consensus 177 v~~~v~g~~~~~~~~l~~---~~~~V~fTGs~~~g~~i~~~aa~~~~~~~lElgG~~p~iV~~dAdl~~a~~~i~~~~~~ 253 (454)
T cd07101 177 LWQVVTGPGSEVGGAIVD---NADYVMFTGSTATGRVVAERAGRRLIGCSLELGGKNPMIVLEDADLDKAAAGAVRACFS 253 (454)
T ss_pred cEEEEeCCcHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHhcCCcEEEECCCCceEEECCCCCHHHHHHHHHHHHHh
Confidence 999998 3555666675 3799999999999999888652 48999999999999999999999999999999998
Q ss_pred CCCCCCchhHHHHHHhhhcccccccChhh
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEMDVSGLPC 355 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (462)
+-|- .|.+...+..|+.|.-.+.+.
T Consensus 254 ~sGQ----~C~a~~rv~V~~~i~d~f~~~ 278 (454)
T cd07101 254 NAGQ----LCVSIERIYVHESVYDEFVRR 278 (454)
T ss_pred cCCC----CcccCeEEEEcHHHHHHHHHH
Confidence 6553 566666666666554333333
|
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s). |
| >COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=114.16 Aligned_cols=102 Identities=25% Similarity=0.384 Sum_probs=87.9
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
++|.|-.++++|.+++||.|++|||||+||-.. ..|+.+.|++++.+|++++.. ...+..|.|.+|++||....+++
T Consensus 210 VIDKDlasalLA~~i~AD~liILTdVd~Vy~n~-gkp~q~~L~~v~~~e~~~yl~--eg~Fa~GSM~PKVeAai~Fv~~~ 286 (312)
T COG0549 210 VIDKDLASALLAEQIDADLLIILTDVDAVYVNF-GKPNQQALDRVTVDEMEKYLA--EGQFAAGSMGPKVEAAISFVENT 286 (312)
T ss_pred EEccHHHHHHHHHHhcCCEEEEEeccchheecC-CCccchhhcccCHHHHHHHHh--cCCCCCCCccHHHHHHHHHHHcC
Confidence 489999999999999999999999999999753 357889999999999988763 45688999999999999888874
Q ss_pred -CeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 111 -VSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 111 -v~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
-+++|.+ .+.+.+++.|+ .||.|.+
T Consensus 287 gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 287 GKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred CCceEECc---HHHHHHHhccC-CCcEecC
Confidence 4788875 57788999998 7999864
|
|
| >PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-11 Score=127.80 Aligned_cols=192 Identities=18% Similarity=0.186 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHhCCchhhcCchhcHHH---------------HHHHHhh-ccc---
Q psy11677 149 VEVLAENVNLKMEILV------------NSATWALDRGVSVVICNGMQKEA---------------IKQIVAG-RKI--- 197 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~------------~iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~-~~i--- 197 (462)
+......|++|.+... .+++.|++++++|..++..|.-+ ++..+.- .+.
T Consensus 55 v~~av~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~Ev~~~~~~l~~~a~~~~~~~~~ 134 (496)
T PLN00412 55 VNKAMESAKAAQKAWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYTAEEGVRILGE 134 (496)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455556665554322 28899999999988888776422 2222211 110
Q ss_pred ccccc--ccCC-------CCCCCCceeeEEE--EeCCCCcccccc-----------------cccccchHHHHHhhcCCC
Q psy11677 198 GTFFT--DASA-------QSGGTPVEVLAEI--WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY 249 (462)
Q Consensus 198 ~t~~a--~~~d-------~~~~~PlGVi~~I--yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~ 249 (462)
|..+. .++. ...+.|+||+++| |+.. +..+.. +.+..++ ..+++.+.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P--~~~~~~~i~~ALaaGN~VIlKPs~~t~~~~-~~l~~~l~~a 211 (496)
T PLN00412 135 GKFLVSDSFPGNERNKYCLTSKIPLGVVLAIPPFNYP--VNLAVSKIAPALIAGNAVVLKPPTQGAVAA-LHMVHCFHLA 211 (496)
T ss_pred CcccccccCCCccCCceeEEEEecceEEEEECCCCch--HHHHHHHHHHHHHcCCEEEEECCccCcHHH-HHHHHHHHHh
Confidence 00000 0111 1236999999999 7655 442111 5555566 6677777766
Q ss_pred ----CeEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHccc
Q psy11677 250 ----PLHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGS 324 (462)
Q Consensus 250 ----~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak 324 (462)
+++|+|+. ...+.++|..+..||.|.++|| .--+.|.+.+..+||.....|++++||++|||+++|++.++++|
T Consensus 212 glP~g~~~~v~g~~~~~~~~l~~~~~v~~V~ftGs-~~g~~v~~~a~~~~~~lElGG~~p~iV~~dADl~~Aa~~i~~~~ 290 (496)
T PLN00412 212 GFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGG-DTGIAISKKAGMVPLQMELGGKDACIVLEDADLDLAAANIIKGG 290 (496)
T ss_pred CCCcccEEEEecCchHHHHHHhcCCCcCEEEEeCh-HHHHHHHHHhCCCcEEEEcCCCceEEEcCCCCHHHHHHHHHHHH
Confidence 99999984 5568888888888999999999 55555555555699999999999999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHhhhcccc
Q psy11677 325 RVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
..+.|- .|.+...+..|..|
T Consensus 291 ~~~~GQ----~C~a~~rv~V~~~i 310 (496)
T PLN00412 291 FSYSGQ----RCTAVKVVLVMESV 310 (496)
T ss_pred HhcCCC----CCccCeEEEEcHHH
Confidence 998774 35555555544444
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.8e-11 Score=132.85 Aligned_cols=93 Identities=22% Similarity=0.288 Sum_probs=81.6
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..++||.++++|||||||++||+ +|+|++|+++++.|+.++.. . |-+..+..++..+.++|
T Consensus 205 gGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~-----~--G~kvlhp~a~~~a~~~~ 277 (819)
T PRK09436 205 NGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSY-----F--GAKVLHPRTIAPIAQFQ 277 (819)
T ss_pred CCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHh-----c--CCccchHHHHHHHHHCC
Confidence 5679999999999999999999999999999998 89999999999999988742 2 33566778999999999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
++++|.|+.+|+ ..||+|...
T Consensus 278 Ipi~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 278 IPCLIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred ceEEEccCCCCC---------CCceEEEec
Confidence 999999998884 468888653
|
|
| >cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.5e-11 Score=127.35 Aligned_cols=178 Identities=17% Similarity=0.171 Sum_probs=123.0
Q ss_pred HHHHHHhCCchhhcCchhcHH---------HHHHHHhhcccccccccc-----------CC----CCCCCCceeeEEEEe
Q psy11677 166 SATWALDRGVSVVICNGMQKE---------AIKQIVAGRKIGTFFTDA-----------SA----QSGGTPVEVLAEIWK 221 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~---------~~~~~~~~~~i~t~~a~~-----------~d----~~~~~PlGVi~~IyE 221 (462)
+++.|.++.++|..++..|.- .+..+++.++ ..+.. +. ...+.|+|||++|++
T Consensus 77 ~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~~~~l~---~~~~~~~~~~g~~~~~~~~~~~~~~~~P~GvV~~I~p 153 (484)
T cd07144 77 LADLVEKNRDLLAAIEALDSGKPYHSNALGDLDEIIAVIR---YYAGWADKIQGKTIPTSPNKLAYTLHEPYGVCGQIIP 153 (484)
T ss_pred HHHHHHHhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH---HHHHHHHHhcCceecCCCCceEEEEEecceEEEEECc
Confidence 888888888888877654421 1333333333 22110 10 124799999999997
Q ss_pred -CCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEEeec
Q psy11677 222 -NETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLIIPR 277 (462)
Q Consensus 222 -sr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDliIPr 277 (462)
.. |-.+. ..++-.|+ ..|.+.+.++ +.+|+|.. ...+.+.|..+..||+|.++
T Consensus 154 ~N~--P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L~~~~~vd~V~fT 230 (484)
T cd07144 154 WNY--PLAMAAWKLAPALAAGNTVVIKPAENTPLSL-LYFANLVKEAGFPPGVVNIIPGYGAVAGSALAEHPDVDKIAFT 230 (484)
T ss_pred CCC--HHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHhCcCCCcEEEEecCCchHHHHHhcCCCcCEEEEE
Confidence 55 75321 16666777 7777777776 99999983 44466777777789999999
Q ss_pred CChhHHHHHHhhC--CCcce-eeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccccChh
Q psy11677 278 GSSDLVRSIQQKS--QHIPV-LGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDVSGLP 354 (462)
Q Consensus 278 G~~~lv~~v~~~s--~~iPv-i~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (462)
||...-+.|.+.+ +..|+ ++.| |++++||++|||+++|++-++.++..+.| ..|.+...+..|..|.-.+.+
T Consensus 231 GS~~~g~~i~~~a~~~~~~~~lElG-Gk~p~iV~~dADl~~Aa~~i~~~~f~~~G----Q~C~a~~rv~V~~~i~d~f~~ 305 (484)
T cd07144 231 GSTATGRLVMKAAAQNLKAVTLECG-GKSPALVFEDADLDQAVKWAAAGIMYNSG----QNCTATSRIYVQESIYDKFVE 305 (484)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEcC-CCCeEEECCCCCHHHHHHHHHHHHHhcCC----CCCCCCceEEEcHHHHHHHHH
Confidence 9999988887743 13555 7777 99999999999999999999988887544 466666666666655433333
|
NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD. |
| >PLN02825 amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=123.70 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=94.6
Q ss_pred HHHhHHHHHHHH-----------hcCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHH
Q psy11677 13 FLTNFNELFRSI-----------FQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRD 81 (462)
Q Consensus 13 ~~~~~~e~~~~~-----------~~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~ 81 (462)
-.+-++.+++.+ .+.++-..+.|++|+.+|.+|+||+|||+||++ +++. ++++|++++..|++
T Consensus 158 d~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~-~~~~-----~g~li~~l~~~e~~ 231 (515)
T PLN02825 158 DVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGP-ILDE-----NGRLIRFMTLEEAD 231 (515)
T ss_pred cHHHHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcc-eecC-----CCCCcCcCCHHHHH
Confidence 344455566655 134455689999999999999999999999977 4543 47899999999887
Q ss_pred hhhhcC--------C---------------CC-------------------------------C----------------
Q psy11677 82 TVQFGQ--------K---------------SK-------------------------------V---------------- 91 (462)
Q Consensus 82 ~l~~~~--------~---------------s~-------------------------------~---------------- 91 (462)
+++... . -. .
T Consensus 232 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (515)
T PLN02825 232 MLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEE 311 (515)
T ss_pred HHHHhhhhcchhhhhhhhhccccccccccccccccccccccccccccccccccccccccccccCcccccccccccccchh
Confidence 665210 0 00 0
Q ss_pred ---CCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCccccccccCC
Q psy11677 92 ---GTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 92 ---gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~~ 141 (462)
.+.+..+|+.+|..||+.|| |+|++++..++. |.++|+.+++||+|..+.
T Consensus 312 ~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~ 366 (515)
T PLN02825 312 RLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDM 366 (515)
T ss_pred hchhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccCh
Confidence 12234567999999999999 899999999999 889999999999999764
|
|
| >PRK13252 betaine aldehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.5e-11 Score=127.53 Aligned_cols=188 Identities=13% Similarity=0.073 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcccccccccc---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIGTFFTDA--- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~t~~a~~--- 204 (462)
+......|++|.+.+.. +++.|.++.+++......|.-. +...++.++ ..+.+
T Consensus 46 v~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~---~~~~~~~~ 122 (488)
T PRK13252 46 VEAAVASAKQGQKIWAAMTAMERSRILRRAVDILRERNDELAALETLDTGKPIQETSVVDIVTGADVLE---YYAGLAPA 122 (488)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 55556666666554322 8888888888887766654432 111122222 11111
Q ss_pred --------CC----CCCCCCceeeEEEEeCCCCcccc-------------------c--ccccccchHHHHHhhcCCC--
Q psy11677 205 --------SA----QSGGTPVEVLAEIWKNETLNTTV-------------------P--KKHAKTSQCKYFTKMLPRY-- 249 (462)
Q Consensus 205 --------~d----~~~~~PlGVi~~IyEsr~~Pnv~-------------------~--~~ea~~sn~~~l~~al~~~-- 249 (462)
+. ...+.|+||+++|. . +|.- . .+++-.|+ ..+++.+.++
T Consensus 123 ~~g~~~~~~~~~~~~~~~~PlGVv~~I~--p--~N~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~t~-~~l~~~~~~agl 197 (488)
T PRK13252 123 LEGEQIPLRGGSFVYTRREPLGVCAGIG--A--WNYPIQIACWKSAPALAAGNAMIFKPSEVTPLTA-LKLAEIYTEAGL 197 (488)
T ss_pred hcCceeccCCCceEEEEEeeeeEEEEEC--C--CchHHHHHHHHHHHHHhcCCeEEEeCCccCcHHH-HHHHHHHHHcCc
Confidence 11 12478999999993 2 3421 1 16667787 7777888776
Q ss_pred --CeEEeecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 250 --PLHSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 250 --~~v~~v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
+++|+|.....+.+.|-.+..||.|..+||...-+.|.+++. ..||+.-..|++++||++|||+++|++.++.++.
T Consensus 198 P~g~v~~v~g~~~~~~~L~~~~~vd~V~fTGS~~~g~~i~~~aa~~l~~~~lElgG~~p~iV~~dAdl~~A~~~i~~~~~ 277 (488)
T PRK13252 198 PDGVFNVVQGDGRVGAWLTEHPDIAKVSFTGGVPTGKKVMAAAAASLKEVTMELGGKSPLIVFDDADLDRAADIAMLANF 277 (488)
T ss_pred CcccEEEEecCcHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhhcCCcEEEEcCCCCeeEECCCCCHHHHHHHHHHHHH
Confidence 999999843337777777788999999999999999888663 3688888999999999999999999999999998
Q ss_pred CCCCCCCchhHHHHHHhhhcccc
Q psy11677 326 VLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
.+-| ..|.+...+..|..|
T Consensus 278 ~~~G----Q~C~a~~rv~V~~~i 296 (488)
T PRK13252 278 YSSG----QVCTNGTRVFVQKSI 296 (488)
T ss_pred hhcC----CCCCCCeEEEEcHHH
Confidence 8544 456666666666554
|
|
| >TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-11 Score=125.92 Aligned_cols=118 Identities=19% Similarity=0.165 Sum_probs=96.0
Q ss_pred CCCCceeeEEEE-eCCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIW-KNETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~Iy-Esr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++|+ +.. |..+.- +.+-.|. ..+.+++.++ +++|+|+ +++....|
T Consensus 133 ~~~P~Gvv~~I~p~N~--P~~~~~~~~~~ALaaGN~VilKps~~~p~~~-~~l~~~l~~aglP~g~~~~v~g~~~~~~~L 209 (477)
T TIGR01722 133 IRQPLGVCAGITPFNF--PAMIPLWMFPIAIACGNTFVLKPSEKVPSAA-VKLAELFSEAGAPDGVLNVVHGDKEAVDRL 209 (477)
T ss_pred EEcccceEEEEccCCh--HHHHHHHHHHHHHhcCCEEEeeCcccChHHH-HHHHHHHHHhCcCCCeEEEEeCCHHHHHHH
Confidence 589999999999 577 864221 4555565 6666888777 9999998 67777777
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
++..+ ||.|.++||....+.|.+.+. ..||+.+..|+|++||++|||+++|++.++.++..+-|=
T Consensus 210 ~~~~~-v~~V~ftGS~~~g~~v~~~a~~~~~~v~lElGG~n~~iV~~dADl~~a~~~i~~~~f~~~GQ 276 (477)
T TIGR01722 210 LEHPD-VKAVSFVGSTPIGRYIHTTGSAHGKRVQALGGAKNHMVVMPDADKDAAADALVGAAYGAAGQ 276 (477)
T ss_pred HcCCC-cCEEEEECCHHHHHHHHHHHHhcCCeEEEECCCCCceEECCCCCHHHHHHHHHHHHHHhcCC
Confidence 77655 999999999999999977642 469999999999999999999999999999997765444
|
In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus. |
| >TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.1e-11 Score=126.99 Aligned_cols=192 Identities=11% Similarity=0.058 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHH-HHH------------HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcc-cc
Q psy11677 149 VEVLAENVNLKMEI-LVN------------SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRK-IG 198 (462)
Q Consensus 149 ~~~ia~~AK~As~~-L~~------------iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~-i~ 198 (462)
+......|++|.+. +.. +++.|.++.+++..++..|.-. ++.++..++ ++
T Consensus 38 v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~~~~~~~~ 117 (481)
T TIGR03216 38 VDAAVAAARAALKGPWGKMTVAERADLLYAVADEIERRFDDFLAAEVADTGKPRSLASHLDIPRGAANFRVFADVVKNAP 117 (481)
T ss_pred HHHHHHHHHHHhHhhHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555556655543 222 8888888888888777654422 222233222 00
Q ss_pred ccccc--cCC------CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---
Q psy11677 199 TFFTD--ASA------QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY--- 249 (462)
Q Consensus 199 t~~a~--~~d------~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~--- 249 (462)
..... .+. ...+.|+||+++|+..- .|-. + +.+++-.|+ ..+.+.+.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N-~Pl~~~~~~~~~ALaaGN~vvlKPs~~tp~t~-~~l~~l~~~aglP 195 (481)
T TIGR03216 118 TECFEMATPDGKGALNYAVRKPLGVVGVISPWN-LPLLLMTWKVGPALACGNTVVVKPSEETPGTA-TLLGEVMNAVGVP 195 (481)
T ss_pred CccccccCCCCCCceeEEEEeccceEEEECCCC-cHHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHcCCC
Confidence 00000 011 12478999999998211 2311 1 116667787 7777888776
Q ss_pred -CeEEeec--CHHHHHHHhcCCCCccEEe----ecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHc
Q psy11677 250 -PLHSQVS--TREEISDLLSMEKHIDLII----PRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARS 322 (462)
Q Consensus 250 -~~v~~v~--~r~~~~~ll~~~~~iDliI----PrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~n 322 (462)
+++++|+ .++.+.++|..+..||.|. |++|..+.+.+.++.+ .++++.| |++++||++|||+++|++.++.
T Consensus 196 ~g~~~~v~g~~~~~~~~~l~~~~~vd~v~fTGS~~~G~~i~~~aa~~~~-~~~lElg-G~n~~iV~~dadl~~aa~~i~~ 273 (481)
T TIGR03216 196 KGVYNVVHGFGPDSAGEFLTRHPGVDAITFTGETRTGSAIMKAAADGVK-PVSFELG-GKNAAIVFADCDFDAAVAGILR 273 (481)
T ss_pred cCceEEEecCChhHHHHHHhcCCCCCEEEEECCHHHHHHHHHHHhcCCC-eEEEECC-CCCeEEECCCCCHHHHHHHHHH
Confidence 8999998 3667899999999999999 7777888888877643 4456666 9999999999999999999999
Q ss_pred ccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 323 GSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 323 ak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
++..+ ....|.+...+..+..|
T Consensus 274 ~~f~~----~GQ~C~a~~rv~V~~~i 295 (481)
T TIGR03216 274 SAFLN----TGQVCLGTERVYVERPI 295 (481)
T ss_pred HHHhc----CCCCCCCCeEEEEcHHH
Confidence 99764 44466666666666654
|
Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation. |
| >cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.3e-11 Score=125.44 Aligned_cols=190 Identities=14% Similarity=0.125 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcC----chhcHHH----HHHHHhhcc---------ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVIC----NGMQKEA----IKQIVAGRK---------IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~A----N~~D~~~----~~~~~~~~~---------i~t 199 (462)
+......|++|.+.+.. +++.|.++.+++... +.+.+.. +...++.++ .|.
T Consensus 40 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~~~~~~g~ 119 (478)
T cd07085 40 VDAAVAAAKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELARLITLEHGKTLADARGDVLRGLEVVEFACSIPHLLKGE 119 (478)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 55556666666554332 888888888877764 4444322 111222221 011
Q ss_pred ccccc-CC---CCCCCCceeeEEEEeCCCCccccc------------------ccccccchHHHHHhhcCCC----CeEE
Q psy11677 200 FFTDA-SA---QSGGTPVEVLAEIWKNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHS 253 (462)
Q Consensus 200 ~~a~~-~d---~~~~~PlGVi~~IyEsr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~ 253 (462)
.+... +. ...+.|+||+++|+..- .|-.+. .+.+-.|+ ..+++.+.++ ++++
T Consensus 120 ~~~~~~~~~~~~~~~~P~GVv~~I~p~N-~P~~~~~~~i~~ALaaGN~VvlKps~~tp~~~-~~l~~~l~~aGlP~gvv~ 197 (478)
T cd07085 120 YLENVARGIDTYSYRQPLGVVAGITPFN-FPAMIPLWMFPMAIACGNTFVLKPSERVPGAA-MRLAELLQEAGLPDGVLN 197 (478)
T ss_pred ecccCCCCceeEEEEecceEEEEECCCC-hHHHHHHHHHHHHHhcCCEEEEECCCcCcHHH-HHHHHHHHHhCCCCCcEE
Confidence 11110 10 13489999999998632 263211 15566677 7777777776 9999
Q ss_pred eec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 254 QVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 254 ~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+|+ +++....|++.. .||.|..+||....+.|.+.+. .+||+....|++++||++|||+++|++.++.++..+.|-
T Consensus 198 ~v~g~~~~~~~L~~~~-~v~~V~fTGs~~~g~~i~~~aa~~~~~~~lElgGk~p~iV~~dADl~~aa~~i~~~~~~~~GQ 276 (478)
T cd07085 198 VVHGGKEAVNALLDHP-DIKAVSFVGSTPVGEYIYERAAANGKRVQALGGAKNHAVVMPDADLEQTANALVGAAFGAAGQ 276 (478)
T ss_pred EEecCHHHHHHHhcCC-CcCEEEEECCHHHHHHHHHHHhhcCCcEEecCCCCCceEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 998 676666677655 4999999999999999987652 489999999999999999999999999999999998775
Q ss_pred CCchhHHHHHHhhhc
Q psy11677 331 NPEDRAKAIYNLADQ 345 (462)
Q Consensus 331 ~~~~~~~~~~~~~~~ 345 (462)
.|.+...+..+
T Consensus 277 ----~C~a~~rv~V~ 287 (478)
T cd07085 277 ----RCMALSVAVAV 287 (478)
T ss_pred ----CCCCCeEEEEe
Confidence 34444444433
|
Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD. |
| >cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.6e-11 Score=125.38 Aligned_cols=190 Identities=15% Similarity=0.086 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHH--------HHHHHHhhccccccccccC---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKE--------AIKQIVAGRKIGTFFTDAS--- 205 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~--------~~~~~~~~~~i~t~~a~~~--- 205 (462)
+......|++|.+.... +++.|.++.++|..+=..|.- .+...++.++ ..+.+.
T Consensus 21 v~~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~---~~~~~~~~~ 97 (446)
T cd07106 21 LDQAVAAAKAAFPGWSATPLEERRAALLAIADAIEANAEELARLLTLEQGKPLAEAQFEVGGAVAWLR---YTASLDLPD 97 (446)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHhhhhcC
Confidence 55555666665554332 777777777777665332210 1333444443 322221
Q ss_pred -------C---CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---CeEEe
Q psy11677 206 -------A---QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PLHSQ 254 (462)
Q Consensus 206 -------d---~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~v~~ 254 (462)
. ...+.|+||+++|++.- .|-. + +..++-+|+ ..+++.+.++ +++++
T Consensus 98 ~~~~~~~~~~~~~~~~P~GVv~~I~p~N-~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~-~~l~~~~~~~lP~g~~~~ 175 (446)
T cd07106 98 EVIEDDDTRRVELRRKPLGVVAAIVPWN-FPLLLAAWKIAPALLAGNTVVLKPSPFTPLCT-LKLGELAQEVLPPGVLNV 175 (446)
T ss_pred ccccCCCCceEEEEEEcceEEEEEcCCC-hHHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHhCCcCeEEE
Confidence 0 12478999999998633 3421 1 116666777 6666655555 99999
Q ss_pred ecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCC
Q psy11677 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLN 331 (462)
Q Consensus 255 v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~ 331 (462)
|+....+.+.|..+..||.|+.+||....+.|.+++. +.++++.| |++++||++|||+++|++.++.+|..+-|-
T Consensus 176 v~g~~~~~~~l~~~~~vd~V~fTGs~~~g~~v~~~aa~~~~~~~lElG-G~~p~iV~~dADl~~aa~~iv~~~~~~~GQ- 253 (446)
T cd07106 176 VSGGDELGPALTSHPDIRKISFTGSTATGKKVMASAAKTLKRVTLELG-GNDAAIVLPDVDIDAVAPKLFWGAFINSGQ- 253 (446)
T ss_pred eeCChhHHHHHhcCCCCCEEEEECCHHHHHHHHHHHHhcCCeeEEecC-CCCeeEECCCCCHHHHHHHHHHHHHHhcCC-
Confidence 9843346677767778999999999999999888652 14467785 999999999999999999999999996554
Q ss_pred CchhHHHHHHhhhcccc
Q psy11677 332 PEDRAKAIYNLADQGEM 348 (462)
Q Consensus 332 ~~~~~~~~~~~~~~~~~ 348 (462)
.|.+...+..|+.|
T Consensus 254 ---~C~a~~rv~V~~~v 267 (446)
T cd07106 254 ---VCAAIKRLYVHESI 267 (446)
T ss_pred ---CCCCCcEEEEcccc
Confidence 55555555555554
|
Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD. |
| >cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-11 Score=127.74 Aligned_cols=133 Identities=22% Similarity=0.224 Sum_probs=103.7
Q ss_pred CCCCceeeEEE--EeCCCCcccc-----------------cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHH
Q psy11677 209 GGTPVEVLAEI--WKNETLNTTV-----------------PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~I--yEsr~~Pnv~-----------------~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~l 264 (462)
.+.|+||+++| |... +..+ +.+.+..++ ..|++.+.++ +.+|+|+. .+.+.+.
T Consensus 116 ~~~P~Gvv~~I~p~N~P--~~~~~~~~~~AL~aGN~Vilkps~~~p~~~-~~l~~~l~~aglP~~vv~~v~g~~~~~~~~ 192 (457)
T cd07114 116 RREPLGVVAAITPWNSP--LLLLAKKLAPALAAGNTVVLKPSEHTPAST-LELAKLAEEAGFPPGVVNVVTGFGPETGEA 192 (457)
T ss_pred EEecceEEEEECCCccH--HHHHHHHHHHHHhcCCeEEeECCccchHHH-HHHHHHHHHcCcCCCcEEEEeCCCchHHHH
Confidence 47899999999 4443 3211 115666677 7777777776 99999983 4456676
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
|-.+..+|.|..+||....+.|.+++. .+||+....|++++||++|||++.|++.++.+++.+-|- .|.++..+
T Consensus 193 l~~~~~i~~V~ftGs~~~g~~v~~~aa~~~~~~~lelgG~~~~iV~~dAdl~~aa~~i~~~~~~~~GQ----~C~a~~~v 268 (457)
T cd07114 193 LVEHPLVAKIAFTGGTETGRHIARAAAENLAPVTLELGGKSPNIVFDDADLDAAVNGVVAGIFAAAGQ----TCVAGSRL 268 (457)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHHHHhcCCeEEEecCCCCeeEECCCCCHHHHHHHHHHHHHhccCC----CCCCCceE
Confidence 666678999999999999999998762 489999999999999999999999999999999986554 56666555
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..++.|
T Consensus 269 ~V~~~v 274 (457)
T cd07114 269 LVQRSI 274 (457)
T ss_pred EEcHHH
Confidence 555544
|
Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD. |
| >cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.3e-11 Score=125.43 Aligned_cols=132 Identities=20% Similarity=0.222 Sum_probs=98.9
Q ss_pred CCCceeeEEEEe-CCCCcccc------------------cccccccchHHHHH----hhcCCC----CeEEeecCHHHHH
Q psy11677 210 GTPVEVLAEIWK-NETLNTTV------------------PKKHAKTSQCKYFT----KMLPRY----PLHSQVSTREEIS 262 (462)
Q Consensus 210 ~~PlGVi~~IyE-sr~~Pnv~------------------~~~ea~~sn~~~l~----~al~~~----~~v~~v~~r~~~~ 262 (462)
+.|+||+++|++ .. |-.+ +.+++-.|+ ..++ +++.++ +++|+|.....+.
T Consensus 130 ~~P~Gvv~~I~p~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~l~~~~~~~aglP~gv~~~v~g~~~~~ 206 (474)
T cd07130 130 WNPLGVVGVITAFNF--PVAVWGWNAAIALVCGNVVVWKPSPTTPLTA-IAVTKIVARVLEKNGLPGAIASLVCGGADVG 206 (474)
T ss_pred EecceeEEEEccCCC--HHHHHHHHhhHHHHcCCeEEeeCCccCHHHH-HHHHHHHHHHHHhcCCCCCcEEEEeCChhHH
Confidence 689999999987 44 6321 016666776 5555 566666 8999998433356
Q ss_pred HHhcCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 263 DLLSMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 263 ~ll~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
+.|-.+..||+|.++||....+.|.+.+ -+.|+++.| |++++||++|||+++|++.+++++..+-| ..|.++
T Consensus 207 ~~L~~~~~vd~V~fTGs~~~g~~i~~~aa~~~~~~~lElG-Gk~p~iV~~dadl~~Aa~~i~~~~~~~~G----Q~C~a~ 281 (474)
T cd07130 207 EALVKDPRVPLVSFTGSTAVGRQVGQAVAARFGRSLLELG-GNNAIIVMEDADLDLAVRAVLFAAVGTAG----QRCTTT 281 (474)
T ss_pred HHHhcCCCCCEEEEECchHHHHHHHHHHHhcCCCEEEEcC-CCCeEEECCCCCHHHHHHHHHHHHHhcCC----CCCcCC
Confidence 6666777899999999999999887653 124666655 99999999999999999999999998544 467776
Q ss_pred HHhhhccccc
Q psy11677 340 YNLADQGEMD 349 (462)
Q Consensus 340 ~~~~~~~~~~ 349 (462)
..+..|..|.
T Consensus 282 ~rv~V~~~i~ 291 (474)
T cd07130 282 RRLIVHESIY 291 (474)
T ss_pred eEEEEcHhHH
Confidence 6666666553
|
Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer. |
| >cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-11 Score=125.75 Aligned_cols=174 Identities=17% Similarity=0.100 Sum_probs=124.0
Q ss_pred HHHHHHhCCchhhcCchhcHHH---------HHHHHhhccccccccccCC---------------CCCCCCceeeEEEE-
Q psy11677 166 SATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIGTFFTDASA---------------QSGGTPVEVLAEIW- 220 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~t~~a~~~d---------------~~~~~PlGVi~~Iy- 220 (462)
+++.|+++.++|..++..|.-+ +...++.++ ..+.+.+ ...+.|+||+++|+
T Consensus 77 ~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~~~~~~---~~a~~a~~~~g~~~~~~~~~~~~~~~~P~GVv~~I~P 153 (481)
T cd07143 77 LADLMERNLDYLASIEALDNGKTFGTAKRVDVQASADTFR---YYGGWADKIHGQVIETDIKKLTYTRHEPIGVCGQIIP 153 (481)
T ss_pred HHHHHHHhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH---HHHHHHHHhcCccccCCCCceEEEEEecceeEEEECC
Confidence 8889999998888877665321 333333333 2222110 12479999999998
Q ss_pred eCCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhcCCCCccEEeec
Q psy11677 221 KNETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLSMEKHIDLIIPR 277 (462)
Q Consensus 221 Esr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~~~~~iDliIPr 277 (462)
+.. |-.+.- +++-.|+ ..+++.+.++ +++|+|. +...+.+.|-.+..||.|...
T Consensus 154 ~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~l~~aGlP~g~v~~v~g~~~~~~~~L~~~~~vd~V~fT 230 (481)
T cd07143 154 WNF--PLLMCAWKIAPALAAGNTIVLKPSELTPLSA-LYMTKLIPEAGFPPGVINVVSGYGRTCGNAISSHMDIDKVAFT 230 (481)
T ss_pred CcC--hHHHHHHHHHHHHHcCCEEEEeCCCCCcHHH-HHHHHHHHhcCcCcccEEEEeCCchhHHHHHhcCCCCCEEEEE
Confidence 445 754311 5555666 6667878776 8999998 345677777777889999999
Q ss_pred CChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhccccc
Q psy11677 278 GSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 278 G~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (462)
||...-+.|.+.+. ..|+..-..|++++||++|||+++|++-+..++..+-|- .|.++..+..|+.|.
T Consensus 231 Gs~~~G~~i~~~aa~~~~~~~~lElGG~~p~iV~~dADl~~Aa~~i~~~~~~naGQ----~C~a~~rv~V~~~i~ 301 (481)
T cd07143 231 GSTLVGRKVMEAAAKSNLKKVTLELGGKSPNIVFDDADLESAVVWTAYGIFFNHGQ----VCCAGSRIYVQEGIY 301 (481)
T ss_pred CchHHHHHHHHHHHHhcCCEEEeecCCCCeeEECCCCCHHHHHHHHHHHHHhccCC----CCCCCcEEEEeHhHH
Confidence 99999988887542 246555555999999999999999999999998876553 666666666666653
|
NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD. |
| >cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-10 Score=121.97 Aligned_cols=132 Identities=20% Similarity=0.248 Sum_probs=100.7
Q ss_pred CCCCceeeEEE--EeCCCCccc---------------c--cccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEI--WKNETLNTT---------------V--PKKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~I--yEsr~~Pnv---------------~--~~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++| |... +.. + +.+++-.|+ ..|++.|.++ +++|+|+ +.+. .+.
T Consensus 120 ~~~P~Gvv~~I~p~N~P--~~~~~~~~~~ALaaGN~VIlKps~~~p~~~-~~l~~~l~~ag~P~g~v~~v~g~~~~-~~~ 195 (452)
T cd07147 120 RRFPIGPVSAITPFNFP--LNLVAHKVAPAIAAGCPFVLKPASRTPLSA-LILGEVLAETGLPKGAFSVLPCSRDD-ADL 195 (452)
T ss_pred EEeceeEEEEEcCCCcH--HHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHcCCCcCcEEEEeCCccc-hhH
Confidence 46899999999 5332 221 1 116777787 8888888776 9999998 4554 455
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
|-.+..+|+|..+||....+.|.+.+...||.....|++++||+++||+++|++-++.++..+-| ..|.+...+..
T Consensus 196 l~~~~~v~~v~fTGs~~~g~~v~~~a~~~~v~lelgG~~p~iV~~dadl~~aa~~i~~~~~~~~G----Q~C~a~~~v~V 271 (452)
T cd07147 196 LVTDERIKLLSFTGSPAVGWDLKARAGKKKVVLELGGNAAVIVDSDADLDFAAQRIIFGAFYQAG----QSCISVQRVLV 271 (452)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHHhCcCceEeecCCCCcEEECCCCCHHHHHHHHHHHHHhccC----CCCcCCcEEEE
Confidence 55566799999999999999999875457998888899999999999999999988888876443 45666666655
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|+.|
T Consensus 272 ~~~i 275 (452)
T cd07147 272 HRSV 275 (452)
T ss_pred chhH
Confidence 5544
|
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD. |
| >PLN02551 aspartokinase | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-10 Score=122.15 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=82.0
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..|+|+.+.++|||||||+.||+ .|+++.|+++++.|+.+++ .+|..-++++ +...+.+.+
T Consensus 256 GGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA-----~~GakVlhp~--ai~pa~~~~ 328 (521)
T PLN02551 256 GGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELA-----YFGAQVLHPQ--SMRPAREGD 328 (521)
T ss_pred ChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHH-----hCCCcccCHH--HHHHHHHCC
Confidence 6789999999999999999999999999999999 8999999999999999885 3555667775 777889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
++++|.|..+|+ ..||+|...
T Consensus 329 Ipi~vknt~~p~---------~~GT~I~~~ 349 (521)
T PLN02551 329 IPVRVKNSYNPT---------APGTLITKT 349 (521)
T ss_pred ceEEEEecCCCC---------CCCcEEecc
Confidence 999999988773 579999754
|
|
| >cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.9e-11 Score=126.83 Aligned_cols=192 Identities=17% Similarity=0.130 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcccccccccc-
Q psy11677 149 VEVLAENVNLKMEILVN--------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIGTFFTDA- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~--------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~t~~a~~- 204 (462)
+......||+|.+...| +++.|.++.++|..+...|.-. +..+++.++ ..+.+
T Consensus 43 v~~av~~A~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~~~~~~---~~a~~~ 119 (476)
T cd07091 43 VDAAVKAARAAFETGWWRKMDPRERGRLLNKLADLIERDRDELAALESLDNGKPLEESAKGDVALSIKCLR---YYAGWA 119 (476)
T ss_pred HHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 55555666666554333 7888888888877765544311 223333333 22111
Q ss_pred ----------CC----CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---
Q psy11677 205 ----------SA----QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY--- 249 (462)
Q Consensus 205 ----------~d----~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~--- 249 (462)
+. ...+.|+|||++|-..- .|-. + +.+.+-.|+ ..+++.+.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N-~P~~~~~~~~~~AL~aGN~VvlKps~~~p~~~-~~l~~~~~~aglP 197 (476)
T cd07091 120 DKIQGKTIPIDGNFLAYTRREPIGVCGQIIPWN-FPLLMLAWKLAPALAAGNTVVLKPAEQTPLSA-LYLAELIKEAGFP 197 (476)
T ss_pred HHhcCccccCCCCceEEEEEeceeEEEEECCCc-CHHHHHHHHHHHHHHcCCEEEEeCCCCChHHH-HHHHHHHHHcCcC
Confidence 11 12489999999993211 1321 1 116666777 7777877776
Q ss_pred -CeEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHccc
Q psy11677 250 -PLHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGS 324 (462)
Q Consensus 250 -~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak 324 (462)
+++++|+. -+.+.+.|..+..+|.|...||...-+.|.+.+. ..||+.-..|++++||++|||++.|++.++.+|
T Consensus 198 ~g~~~~v~g~~~~~~~~L~~~~~vd~V~fTGs~~~g~~v~~~aa~~~~~~~~lElgG~~~~iV~~dADl~~Aa~~i~~~~ 277 (476)
T cd07091 198 PGVVNIVPGFGPTAGAAISSHMDVDKIAFTGSTAVGRTIMEAAAKSNLKKVTLELGGKSPNIVFDDADLDKAVEWAAFGI 277 (476)
T ss_pred CCcEEEEeCCChhHHHHHhcCCCcCEEEEECcHHHHHHHHHHHHhcCCceEEEecCCCCeEEECCCCCHHHHHHHHHHHH
Confidence 89999983 4456666667778999999999999888887542 267877777999999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHhhhccccc
Q psy11677 325 RVLQGLNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (462)
..+.|- .|.++..+..++.|.
T Consensus 278 ~~~~GQ----~C~a~~rv~V~~~v~ 298 (476)
T cd07091 278 FFNQGQ----CCCAGSRIFVQESIY 298 (476)
T ss_pred HhccCC----CCcCCcEEEEeHHHH
Confidence 997664 566666666665553
|
ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co |
| >PTZ00381 aldehyde dehydrogenase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-10 Score=124.84 Aligned_cols=172 Identities=17% Similarity=0.145 Sum_probs=126.2
Q ss_pred HHHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccccccccC----------C--CCCCCCceee
Q psy11677 165 NSATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTDAS----------A--QSGGTPVEVL 216 (462)
Q Consensus 165 ~iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~~~----------d--~~~~~PlGVi 216 (462)
.+++.|++++++|.++...|+-+ ++.+++.++ .+.... . ...+.|+||+
T Consensus 37 ~l~~~l~~~~~~i~~a~~~d~Gk~~~ea~~~Ev~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~PlGVV 113 (493)
T PTZ00381 37 NLLRMLEENKQEFSEAVHKDLGRHPFETKMTEVLLTVAEIEHLLKHLD---EYLKPEKVDTVGVFGPGKSYIIPEPLGVV 113 (493)
T ss_pred HHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCcccCCccccCCCceEEEEecCcEE
Confidence 38888999999999888877633 444444444 332211 0 1248899999
Q ss_pred EEEEe-CCCCcc-c---------------ccc--cccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhcCCCCccE
Q psy11677 217 AEIWK-NETLNT-T---------------VPK--KHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLSMEKHIDL 273 (462)
Q Consensus 217 ~~IyE-sr~~Pn-v---------------~~~--~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~~~~~iDl 273 (462)
++|.. .. |- . +.. ..+-+|+ ..+.+.+.++ +++++|+ +++....|++.. +|.
T Consensus 114 ~iI~PwN~--Pl~l~~~~l~~ALaaGN~VIlKPse~tp~t~-~~l~~ll~~~lp~~~v~vv~g~~~~~~~l~~~~--~d~ 188 (493)
T PTZ00381 114 LVIGAWNY--PLNLTLIPLAGAIAAGNTVVLKPSELSPHTS-KLMAKLLTKYLDPSYVRVIEGGVEVTTELLKEP--FDH 188 (493)
T ss_pred EEECCCch--HHHHHHHHHHHHHHcCCEEEEECCccCHHHH-HHHHHHHHHhCCcCEEEEecCCHHHHHHHHhCC--CCE
Confidence 99985 33 52 1 111 5666777 7777666655 9999998 677778888753 999
Q ss_pred EeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 274 IIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 274 iIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
|..+||...-+.|.+.+. .+||.....|.+++||++|||+++|++.++.+|..+-| ..|.|...+..++.+
T Consensus 189 i~FTGS~~vG~~V~~~aa~~l~pv~lElGGk~p~iV~~dAdl~~Aa~~i~~g~~~naG----Q~C~A~~~vlV~~~i 261 (493)
T PTZ00381 189 IFFTGSPRVGKLVMQAAAENLTPCTLELGGKSPVIVDKSCNLKVAARRIAWGKFLNAG----QTCVAPDYVLVHRSI 261 (493)
T ss_pred EEEECCHHHHHHHHHHHHhcCCcEEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhhcC----CcCCCCCEEEEeHHH
Confidence 999999999888876642 48999999999999999999999999999999998644 356555555555554
|
|
| >TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-10 Score=123.12 Aligned_cols=194 Identities=16% Similarity=0.131 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHH-----H---HHHHHhhcc---------ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKE-----A---IKQIVAGRK---------IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~-----~---~~~~~~~~~---------i~t 199 (462)
+......|++|.+.+.. +++.|.++.++|...-..|.- . +..+++.++ .|.
T Consensus 37 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~~~~~~g~ 116 (484)
T TIGR03240 37 VEAAVAAARAAFPAWARLSLEERIAVVQRFAALLEERKEALARVIARETGKPLWETRTEVASMIGKVAISIKAYHERTGE 116 (484)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55666667766654322 788888888777765444321 1 333333322 011
Q ss_pred cccccCC---CCCCCCceeeEEE--EeCC-CCcc------------cc-c-ccccccchHHHHHhhcCCC----CeEEee
Q psy11677 200 FFTDASA---QSGGTPVEVLAEI--WKNE-TLNT------------TV-P-KKHAKTSQCKYFTKMLPRY----PLHSQV 255 (462)
Q Consensus 200 ~~a~~~d---~~~~~PlGVi~~I--yEsr-~~Pn------------v~-~-~~ea~~sn~~~l~~al~~~----~~v~~v 255 (462)
.....+. ...+.|+||+++| |..- -+|. |+ + ...+-.|+ ..+++.+.++ +++|+|
T Consensus 117 ~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~t~-~~l~~~~~~aGlP~gvv~~v 195 (484)
T TIGR03240 117 SENPMPDGRAVLRHRPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPWVA-EETVKLWEKAGLPAGVLNLV 195 (484)
T ss_pred cccCCCCceeEEEEecccEEEEECCCchHHHHHHHHHHHHHHcCCEEEEECCccccHHH-HHHHHHHHHhCcCcccEEEE
Confidence 1101111 0126799999999 4310 0011 11 1 15567777 7777777776 899999
Q ss_pred cCHHHHHHHhcCCCCccEEeecCChhH----HHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCC
Q psy11677 256 STREEISDLLSMEKHIDLIIPRGSSDL----VRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLN 331 (462)
Q Consensus 256 ~~r~~~~~ll~~~~~iDliIPrG~~~l----v~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~ 331 (462)
+....+.+.|-.+..||.|.++||..- .+.+..+-...++++.| |++++||++|||+++|++.++.+|..+-
T Consensus 196 ~g~~~~~~~L~~~~~vd~V~fTGS~~~G~~i~~~aa~~~~~~~~lElG-Gk~p~iV~~dADl~~aa~~i~~~~~~~~--- 271 (484)
T TIGR03240 196 QGARETGVALAAHPDIDGLLFTGSSNTGHLLHRQFAGRPEKILALEMG-GNNPLIVDEVADIDAAVHLIIQSAFISA--- 271 (484)
T ss_pred eCCHHHHHHHhcCCCCCEEEEECCHHHHHHHHHHhhhcCCCcEEEECC-CCCeEEECCCCCHHHHHHHHHHHHHhcC---
Confidence 954445666666778999999999994 44433332224578888 9999999999999999999999998754
Q ss_pred CchhHHHHHHhhhcccc
Q psy11677 332 PEDRAKAIYNLADQGEM 348 (462)
Q Consensus 332 ~~~~~~~~~~~~~~~~~ 348 (462)
...|.+...+..|+.+
T Consensus 272 -GQ~C~a~~rv~V~~~~ 287 (484)
T TIGR03240 272 -GQRCTCARRLLVPDGA 287 (484)
T ss_pred -CCCCcCCcEEEEeccc
Confidence 4467776666666554
|
Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism. |
| >TIGR01780 SSADH succinate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-10 Score=121.49 Aligned_cols=133 Identities=18% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCCCceeeEEEEe-CCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeecC--HHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVST--REEISD 263 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~~--r~~~~~ 263 (462)
++.|+||+++|+. .. |-.+. ...+-.|+ ..+++.+.++ +++++|+. ...+.+
T Consensus 114 ~~~P~Gvv~~I~p~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~ 190 (448)
T TIGR01780 114 IKQPVGVCAAITPWNF--PAAMITRKAGAALAAGCTVVVKPAEQTPLSA-LALARLAEQAGIPKGVLNVITGSRAKEVGK 190 (448)
T ss_pred EEeeeeEEEEEcCCCh--HHHHHHHHHHHHHHcCCeEeeECCccchHHH-HHHHHHHHHcCCCccceEEEeCCCchHHHH
Confidence 4699999999997 44 65322 16667777 7777777776 89999983 466767
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.|-.+..||.|..+||...-+.|.+.+. ..||+....|++++||++|||+++|++.++.++..+.|- .|.++..
T Consensus 191 ~l~~~~~i~~v~ftGs~~~g~~v~~~aa~~~~~~~lElGGk~~~iV~~dadl~~aa~~iv~~~f~~sGQ----~C~a~~r 266 (448)
T TIGR01780 191 VLCTSPLVRKISFTGSTNVGKILMKQSASTVKKVSMELGGNAPFIVFDDADIDQAVEGAMASKFRNAGQ----TCVCANR 266 (448)
T ss_pred HHhcCCCCCEEEEECcHHHHHHHHHHHhhcCCceEeecCCCCeeEECCCCCHHHHHHHHHHHHHHhcCC----cccCCce
Confidence 7767778999999999999999888653 368877777999999999999999999999999987655 4555555
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..+..|
T Consensus 267 v~V~~~i 273 (448)
T TIGR01780 267 LYVHDGI 273 (448)
T ss_pred eechHHH
Confidence 5555443
|
SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070). |
| >cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-10 Score=118.49 Aligned_cols=174 Identities=21% Similarity=0.201 Sum_probs=125.6
Q ss_pred HHHHHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccccccc-------c---CC--CCCCCCce
Q psy11677 163 LVNSATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTD-------A---SA--QSGGTPVE 214 (462)
Q Consensus 163 L~~iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~-------~---~d--~~~~~PlG 214 (462)
|..+++.|+++.++|.+++.+|..+ ++..++.++ .+.. . .. ...+.|+|
T Consensus 26 L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~P~G 102 (443)
T cd07132 26 LEALLRMLEENEDEIVEALAKDLRKPKFEAVLSEILLVKNEIKYAISNLP---EWMKPEPVKKNLATLLDDVYIYKEPLG 102 (443)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCccCCCccccCCCceEEEEeccc
Confidence 4448888999999988888776543 233333333 2211 0 00 12378999
Q ss_pred eeEEEEe-CCCCccc----------------c--cccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhcCCCCc
Q psy11677 215 VLAEIWK-NETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLSMEKHI 271 (462)
Q Consensus 215 Vi~~IyE-sr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~~~~~i 271 (462)
|+++|++ .. |-. + +.+.+..|+ ..+.+.+.++ +++++++ +.+....|++. .|
T Consensus 103 Vv~~I~p~N~--P~~~~~~~~~~ALaaGN~VvlKps~~~~~~~-~~l~~~~~~~lp~gv~~vv~g~~~~~~~l~~~--~v 177 (443)
T cd07132 103 VVLIIGAWNY--PLQLTLVPLVGAIAAGNCVVIKPSEVSPATA-KLLAELIPKYLDKECYPVVLGGVEETTELLKQ--RF 177 (443)
T ss_pred EEEEEcCCch--hHHHHHHHHHHHHHcCCEEEEECCccCHHHH-HHHHHHHHHhCCcCeEEEEeCCHHHHHHHHhC--CC
Confidence 9999997 44 621 1 116667777 7777666555 9999998 57778888863 59
Q ss_pred cEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 272 DLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 272 DliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
|.|.++||....+.|.+.+. ..||+....|++++||++|||++.|++-++.++..+.|- .|.+...+..|+.|
T Consensus 178 d~V~fTGs~~~g~~i~~~a~~~~~~~~lElgG~~p~iV~~dADl~~aa~~i~~~~f~~~GQ----~C~a~~rv~V~~~i 252 (443)
T cd07132 178 DYIFYTGSTSVGKIVMQAAAKHLTPVTLELGGKSPCYVDKSCDIDVAARRIAWGKFINAGQ----TCIAPDYVLCTPEV 252 (443)
T ss_pred CEEEEECChHHHHHHHHHHHhhCCceEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhcCCC----ceeCCcEEEEcHHH
Confidence 99999999999888766541 489999999999999999999999999999999997765 45555555555444
|
NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes. |
| >cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.5e-10 Score=117.39 Aligned_cols=190 Identities=15% Similarity=0.112 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHH-----H----------HHHHHhhccccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKE-----A----------IKQIVAGRKIGTFF 201 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~-----~----------~~~~~~~~~i~t~~ 201 (462)
+++....|++|...... +++.|..+.+++.+....|.- . ++.++...+ .+
T Consensus 23 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~---~~ 99 (451)
T cd07150 23 AERAIAAAYDAFPAWAATTPSERERILLKAAEIMERRADDLIDLLIDEGGSTYGKAWFETTFTPELLRAAAGECR---RV 99 (451)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH---Hh
Confidence 55556666666554332 888888888888776555431 1 333333222 21
Q ss_pred cc--cCC-------CCCCCCceeeEEEEeCCCCccccc------------------ccccccchHHHHHhhcCCC----C
Q psy11677 202 TD--ASA-------QSGGTPVEVLAEIWKNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 202 a~--~~d-------~~~~~PlGVi~~IyEsr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~ 250 (462)
.. ++. ...+.|+||+++|+..- .|-.+. ..++..|+ ..|.+.+.++ +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~P~GVv~~I~P~N-~P~~~~~~~~~~ALaaGN~VilKps~~~p~t~-~~l~~~~~~ag~P~g 177 (451)
T cd07150 100 RGETLPSDSPGTVSMSVRRPLGVVAGITPFN-YPLILATKKVAFALAAGNTVVLKPSEETPVIG-LKIAEIMEEAGLPKG 177 (451)
T ss_pred cCccccCCCCCceeEEEEecccEEEEECCCc-cHHHHHHHHHHHHHhcCCeEEEECCccCcHHH-HHHHHHHHHhCCCcC
Confidence 11 111 13489999999998522 254211 15677777 7777777776 8
Q ss_pred eEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--Ccc-eeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++++|+. ...+.+.|-.+..||.|..+||...-+.|.+.+. ..| +++.| |++++||++|||++.|++.++.++..
T Consensus 178 ~v~~v~g~~~~~~~~l~~~~~v~~V~ftGs~~~g~~i~~~aa~~~~~~~lelG-G~~~~iV~~dadl~~aa~~i~~~~~~ 256 (451)
T cd07150 178 VFNVVTGGGAEVGDELVDDPRVRMVTFTGSTAVGREIAEKAGRHLKKITLELG-GKNPLIVLADADLDYAVRAAAFGAFM 256 (451)
T ss_pred cEEEeeCCCcHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhhcCCceEeecC-CCCeeEECCCCChHHHHHHHHHHHHh
Confidence 9999994 5567777777778999999999986555543321 234 55665 99999999999999999999999887
Q ss_pred CCCCCCchhHHHHHHhhhcccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+-|- .|.+...+..+..+
T Consensus 257 ~~GQ----~C~a~~rv~V~~~i 274 (451)
T cd07150 257 HQGQ----ICMSASRIIVEEPV 274 (451)
T ss_pred hcCC----CCCCCeeEEEcHHH
Confidence 5443 55555555544443
|
Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde. |
| >cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-10 Score=116.03 Aligned_cols=119 Identities=23% Similarity=0.208 Sum_probs=95.1
Q ss_pred CCCCceeeEEEEeCCCCccc-cc-----------------ccccccchHHHHHhhcCCC----CeEEeecC--HHHHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTT-VP-----------------KKHAKTSQCKYFTKMLPRY----PLHSQVST--REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv-~~-----------------~~ea~~sn~~~l~~al~~~----~~v~~v~~--r~~~~~l 264 (462)
.+.|+||+++|+... .|-. .. .+.+..++ ..+++.|.++ +++++++. ++....|
T Consensus 89 ~~~p~Gvv~~i~p~n-~p~~~~~~~~~~aL~~GN~vilk~s~~~~~~~-~~l~~~l~~ag~p~~~v~~~~~~~~~~~~~l 166 (367)
T cd06534 89 RREPLGVVGVITPWN-FPLLLAAWKLAPALAAGNTVVLKPSELTPLTA-LALAELLQEAGLPPGVVNVVPGGGDEVGAAL 166 (367)
T ss_pred EEEeeeEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHhcCCCcCeEEEEEcCchhHHHHH
Confidence 378999999999876 3422 01 15666777 7777777776 89999983 3345556
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+... .||.|+..||...++.|.+.+. .+|++.++.|++++||+++||+++|++.+.++++.+-|-
T Consensus 167 ~~~~-~vd~v~~tGs~~~~~~v~~~~~~~~~~~~~e~~g~~~~iV~~~ad~~~aa~~i~~~~~~~~gq 233 (367)
T cd06534 167 LSHP-RVDKISFTGSTAVGKAIMKAAAENLKPVTLELGGKSPVIVDEDADLDAAVEGAVFGAFFNAGQ 233 (367)
T ss_pred hcCC-CcCEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 6555 5999999999999999887653 389999999999999999999999999999999987554
|
The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri |
| >cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.9e-10 Score=118.63 Aligned_cols=190 Identities=16% Similarity=0.134 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcC----chhcHHH-----HHHHHhhcccccccccc---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVIC----NGMQKEA-----IKQIVAGRKIGTFFTDA--- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~A----N~~D~~~-----~~~~~~~~~i~t~~a~~--- 204 (462)
+......|+++.+.+.. +++.|.++.++|... +.+.+.. +...+..++ .-+..
T Consensus 61 v~~ai~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~---~~~~~~~~ 137 (480)
T cd07111 61 VDAAVAAARTAFESWSALPGHVRARHLYRIARHIQKHQRLFAVLESLDNGKPIRESRDCDIPLVARHFY---HHAGWAQL 137 (480)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 55556666666554322 788888888777432 4344321 111111111 11111
Q ss_pred --CCCCCCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC----CeEEeecCHHH
Q psy11677 205 --SAQSGGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY----PLHSQVSTREE 260 (462)
Q Consensus 205 --~d~~~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~----~~v~~v~~r~~ 260 (462)
.....+.|+||+++|-..- .|-.+ +...+..|+ ..+++.+.++ +++|+|+....
T Consensus 138 ~~~~~~~~~P~GVV~~I~PwN-~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~-~~l~~~~~~aGlP~gvv~~v~g~~~ 215 (480)
T cd07111 138 LDTELAGWKPVGVVGQIVPWN-FPLLMLAWKICPALAMGNTVVLKPAEYTPLTA-LLFAEICAEAGLPPGVLNIVTGNGS 215 (480)
T ss_pred hcCCcccceecceEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHhcCCCcccEEEEeCCch
Confidence 0123478999999993111 13111 116667777 7777888877 89999984334
Q ss_pred HHHHhcCCCCccEEeecCChhHHHHHHhhC--CCcc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHH
Q psy11677 261 ISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337 (462)
Q Consensus 261 ~~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~ 337 (462)
+.+.|-.+..+|.|...||....+.|.+.+ +..| +++.| |++++||+++||+++|++.++.++..+-|- .|.
T Consensus 216 ~~~~l~~~~~v~~v~ftGs~~~g~~v~~~aa~~~~~~~lElG-Gk~p~iV~~daDl~~aa~~i~~~~f~~~GQ----~C~ 290 (480)
T cd07111 216 FGSALANHPGVDKVAFTGSTEVGRALRRATAGTGKKLSLELG-GKSPFIVFDDADLDSAVEGIVDAIWFNQGQ----VCC 290 (480)
T ss_pred HHHHHhcCCCcCEEEEECCHHHHHHHHHHHhccCCcEEEEcC-CCceEEECCCCCHHHHHHHHHHHHHhcCCC----cCc
Confidence 566666677899999999999999988764 1244 56666 999999999999999999999999986444 455
Q ss_pred HHHHhhhcccc
Q psy11677 338 AIYNLADQGEM 348 (462)
Q Consensus 338 ~~~~~~~~~~~ 348 (462)
+...+..+..|
T Consensus 291 a~~ri~V~~~i 301 (480)
T cd07111 291 AGSRLLVQESV 301 (480)
T ss_pred CCceEEEcHHH
Confidence 55555444443
|
Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence. |
| >cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.6e-10 Score=117.91 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=99.0
Q ss_pred CCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHH----hhcCCC----CeEEeecCHHHHHH
Q psy11677 210 GTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFT----KMLPRY----PLHSQVSTREEISD 263 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~----~al~~~----~~v~~v~~r~~~~~ 263 (462)
+.|+||+++|+..- .|-. + +...+.+|+ ..++ ++|.++ +++|+|+...++.+
T Consensus 118 ~~P~GVv~~I~p~n-~P~~~~~~~~~~ALaaGN~VIlKps~~~p~~~-~~~~~~~~~~l~~aGlP~gvv~~v~g~~~~~~ 195 (465)
T cd07098 118 YEPLGVVGAIVSWN-YPFHNLLGPIIAALFAGNAIVVKVSEQVAWSS-GFFLSIIRECLAACGHDPDLVQLVTCLPETAE 195 (465)
T ss_pred EecceeEEEEcccC-cHHHHHHHHHHHHHHcCCEEEEECCCcCcHHH-HHHHHHHHHHHHhcCCCCCeEEEEECCHHHHH
Confidence 58999999998632 2421 1 115566666 5544 666666 99999994335666
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.|-.+..||.|.++||...-++|.+.+ +.+||+.-..|++++||+++||+++|++.++++++.+.|- .|.++..
T Consensus 196 ~L~~~~~v~~V~ftGs~~~g~~v~~~a~~~~~~~~lelgG~~~~iV~~dadl~~a~~~i~~~~~~~~GQ----~C~a~~r 271 (465)
T cd07098 196 ALTSHPVIDHITFIGSPPVGKKVMAAAAESLTPVVLELGGKDPAIVLDDADLDQIASIIMRGTFQSSGQ----NCIGIER 271 (465)
T ss_pred HHhcCCCCCEEEEECCHHHHHHHHHHHHhcCCeEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC----CCcCCcE
Confidence 666777899999999999888877743 2589999999999999999999999999999999998875 3555444
Q ss_pred hhhccc
Q psy11677 342 LADQGE 347 (462)
Q Consensus 342 ~~~~~~ 347 (462)
+..+..
T Consensus 272 v~V~~~ 277 (465)
T cd07098 272 VIVHEK 277 (465)
T ss_pred EEEcHH
Confidence 444443
|
Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation. |
| >cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.1e-10 Score=117.51 Aligned_cols=189 Identities=14% Similarity=0.117 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHH---------HHHHHHhhcccccccccc---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKE---------AIKQIVAGRKIGTFFTDA--- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~---------~~~~~~~~~~i~t~~a~~--- 204 (462)
+......|++|...... +++.|.++.++|..+...|.- .+...++.++ ..+.+
T Consensus 21 v~~av~~a~~a~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~i~~~~---~~~~~~~~ 97 (450)
T cd07092 21 VDAAVAAAHAAFPSWRRTTPAERSKALLKLADAIEENAEELAALESRNTGKPLHLVRDDELPGAVDNFR---FFAGAART 97 (450)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 44555566665543332 788888888888776654321 1222333222 11111
Q ss_pred ----------CC---CCCCCCceeeEEEEe-CCCCccccc------------------ccccccchHHHHHhhcCCC---
Q psy11677 205 ----------SA---QSGGTPVEVLAEIWK-NETLNTTVP------------------KKHAKTSQCKYFTKMLPRY--- 249 (462)
Q Consensus 205 ----------~d---~~~~~PlGVi~~IyE-sr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~--- 249 (462)
+. ...+.|+|||++|+. .. |-.+. .+.+-.|+ ..+++.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~P~N~--P~~~~~~~~~~AL~aGN~VIlKps~~~~~~~-~~l~~~~~~glP~ 174 (450)
T cd07092 98 LEGPAAGEYLPGHTSMIRREPIGVVAQIAPWNY--PLMMAAWKIAPALAAGNTVVLKPSETTPLTT-LLLAELAAEVLPP 174 (450)
T ss_pred hcCcccCccCCCceeEEEEeccceEEEECCCCc--HHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHhcCCc
Confidence 10 124799999999987 34 74321 15666677 7777665554
Q ss_pred CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 250 PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 250 ~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
+++++|. +.+.+.+.|-.+..+|.|...||....+.|.+.+. ..|++.-..|++++||++|||+++|++.++.++..
T Consensus 175 g~~~~v~g~~~~~~~~l~~~~~v~~V~fTGs~~~g~~v~~~a~~~~~~~~lelgG~~p~iV~~dAdl~~aa~~iv~~~~~ 254 (450)
T cd07092 175 GVVNVVCGGGASAGDALVAHPRVRMVSLTGSVRTGKKVARAAADTLKRVHLELGGKAPVIVFDDADLDAAVAGIATAGYY 254 (450)
T ss_pred ccEEEeecCchHHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhhcCCcEEEECCCCCeeEECCCCCHHHHHHHHHHHHHh
Confidence 9999998 45556666656667999999999999998888653 36887778999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHhhhccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGE 347 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~ 347 (462)
+-|- .|.++..+..++.
T Consensus 255 ~~GQ----~C~a~~~v~V~~~ 271 (450)
T cd07092 255 NAGQ----DCTAACRVYVHES 271 (450)
T ss_pred hCCC----CCCCCcEEEEeHH
Confidence 7665 4444444444433
|
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency. |
| >cd07099 ALDH_DDALDH Methylomonas sp | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-10 Score=118.76 Aligned_cols=131 Identities=18% Similarity=0.144 Sum_probs=98.9
Q ss_pred CCCCceeeEEEEe-CCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~l 264 (462)
.+.|+||+++|+. .. |..+.- +++-.+. ..+++.+.++ +++++|+. .+....|
T Consensus 116 ~~~P~Gvv~~I~p~N~--P~~~~~~~l~~ALaaGN~vilKps~~~p~~~-~~l~~~l~~ag~P~g~~~vv~g~~~~~~~l 192 (453)
T cd07099 116 EYRPYGVVGVISPWNY--PLLTPMGDIIPALAAGNAVVLKPSEVTPLVG-ELLAEAWAAAGPPQGVLQVVTGDGATGAAL 192 (453)
T ss_pred EEecceEEEEECCCCh--HHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHcCCCCCeEEEEeCCchHHHHH
Confidence 4789999999986 44 653211 4555666 6666777776 99999983 4555556
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
++ + .||.|..+||....+.|.+.+. .+||+....|++++||++|||+++|++.+++++..+-|- .|.+...+
T Consensus 193 ~~-~-~vd~V~ftGs~~~g~~i~~~aa~~~~~~~lelgG~~p~iV~~dadl~~a~~~i~~~~~~~~GQ----~C~a~~ri 266 (453)
T cd07099 193 ID-A-GVDKVAFTGSVATGRKVMAAAAERLIPVVLELGGKDPMIVLADADLERAAAAAVWGAMVNAGQ----TCISVERV 266 (453)
T ss_pred hc-C-CCCEEEEECCHHHHHHHHHHHHhcCCeEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC----CCCCCcEE
Confidence 65 3 4999999999999888877552 479998888999999999999999999999999986654 45554444
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..|+.|
T Consensus 267 ~V~~~i 272 (453)
T cd07099 267 YVHESV 272 (453)
T ss_pred EEcHHH
Confidence 444443
|
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid. |
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-09 Score=124.17 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=80.8
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|+.|+.+|..|+|+.+.+||||||||++||+ .|+|++|+++++.|+.+++ ..|..-++++ +...+.+.+
T Consensus 208 GGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela-----~~GakVlHp~--ti~pa~~~~ 280 (810)
T PRK09466 208 NGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELA-----RLAAPVLHAR--TLQPVSGSD 280 (810)
T ss_pred ChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHH-----HcCccccCHH--HHHHHHHcC
Confidence 6789999999999999999999999999999999 8999999999999999885 3455557775 677889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
|+++|.|..+|+ ..||+|..
T Consensus 281 Ipi~V~ntf~p~---------~~GT~I~~ 300 (810)
T PRK09466 281 IDLQLRCSYQPE---------QGSTRIER 300 (810)
T ss_pred CeEEEecCCCCC---------CCceEEec
Confidence 999999988773 45898865
|
|
| >cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-10 Score=119.90 Aligned_cols=128 Identities=17% Similarity=0.225 Sum_probs=95.7
Q ss_pred CCCCceeeEEE--EeCCCCcccccc-----------------cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEI--WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~I--yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+|||++| |... .+.... +++-.|+ ..+++.+.++ +++++|. +.+ +.+.
T Consensus 121 ~~~P~Gvv~~I~p~N~P--~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aGlP~gvv~~v~g~~~-~~~~ 196 (455)
T cd07148 121 TREPIGVVVAISAFNHP--LNLIVHQVAPAIAAGCPVIVKPALATPLSC-LAFVDLLHEAGLPEGWCQAVPCENA-VAEK 196 (455)
T ss_pred EEecceEEEEECCCCcH--HHHHHHHHHHHHHcCCEEEeeCCCcccHHH-HHHHHHHHHcCCCcCcEEEEeCChH-HHHH
Confidence 47899999999 6555 432111 6777888 8888777776 8999998 555 4566
Q ss_pred hcCCCCccEEeecCChhH----HHHHHhhCCCcc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDL----VRSIQQKSQHIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~l----v~~v~~~s~~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
|-.+..||+|.+.||..- .+.... +.| ++++| |++++||++|||+++|++.++.++..+-| ..|.+.
T Consensus 197 L~~~~~v~~v~fTGs~~~G~~i~~~aa~---~~~~~lElG-G~~p~iV~~dADl~~aa~~i~~~~f~~~G----Q~C~a~ 268 (455)
T cd07148 197 LVTDPRVAFFSFIGSARVGWMLRSKLAP---GTRCALEHG-GAAPVIVDRSADLDAMIPPLVKGGFYHAG----QVCVSV 268 (455)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHHhhc---CCcEEEecC-CCCceEECCCCCHHHHHHHHHHHHHhcCC----CCccCC
Confidence 667778999999999974 343332 245 66777 99999999999999999999999998654 356666
Q ss_pred HHhhhcccc
Q psy11677 340 YNLADQGEM 348 (462)
Q Consensus 340 ~~~~~~~~~ 348 (462)
..+..|..|
T Consensus 269 ~rv~V~~~i 277 (455)
T cd07148 269 QRVFVPAEI 277 (455)
T ss_pred eEEEEcHhH
Confidence 666555554
|
Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD. |
| >TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-10 Score=121.63 Aligned_cols=192 Identities=12% Similarity=0.099 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccC---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDAS--- 205 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~--- 205 (462)
+......|++|...... +++.|.++.++|...-..|.-+ +..+++.++ ..+...
T Consensus 76 v~~av~~A~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~i~~l~---~~a~~~~~~ 152 (500)
T TIGR01238 76 VQAAIDSAQQAFPTWNATPAKERAAKLDRLADLLELHMPELMALCVREAGKTIHNAIAEVREAVDFCR---YYAKQVRDV 152 (500)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55556666666653322 7777777777664433222211 333344443 222221
Q ss_pred -CCCCCCCceeeEEEEeCCCCccccc---------------ccccccchH--HHHHhhcCCC----CeEEeecC-HHHHH
Q psy11677 206 -AQSGGTPVEVLAEIWKNETLNTTVP---------------KKHAKTSQC--KYFTKMLPRY----PLHSQVST-REEIS 262 (462)
Q Consensus 206 -d~~~~~PlGVi~~IyEsr~~Pnv~~---------------~~ea~~sn~--~~l~~al~~~----~~v~~v~~-r~~~~ 262 (462)
....+.|+||+++|-..- .|-.+. =|.+-++.. ..+++.+.++ +.+|+|+. ...+.
T Consensus 153 ~~~~~~~P~GVV~~I~pwN-~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~~v~g~~~~~~ 231 (500)
T TIGR01238 153 LGEFSVESRGVFVCISPWN-FPLAIFTGQISAALAAGNTVIAKPAEQTSLIAYRAVELMQEAGFPAGTIQLLPGRGADVG 231 (500)
T ss_pred cCceeccCcceEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEeCCCCccHHHHHHHHHHHHcCCCCCceEEEecCcchHH
Confidence 123489999999995322 232110 033333331 4444777776 99999984 33556
Q ss_pred HHhcCCCCccEEeecCChhHHHHHHhhCC-----CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHH
Q psy11677 263 DLLSMEKHIDLIIPRGSSDLVRSIQQKSQ-----HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337 (462)
Q Consensus 263 ~ll~~~~~iDliIPrG~~~lv~~v~~~s~-----~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~ 337 (462)
+.|-.+..||.|.++||....++|.+.+. .+||+....|++++||+++||+++|++.++.++..+-|= .|.
T Consensus 232 ~~l~~~~~v~~V~ftGs~~~g~~v~~~aa~~~~~~~~v~lElGGknp~IV~~dAdld~Aa~~i~~~~f~nsGQ----~C~ 307 (500)
T TIGR01238 232 AALTSDPRIAGVAFTGSTEVAQLINQTLAQREDAPVPLIAETGGQNAMIVDSTALPEQVVRDVLRSAFDSAGQ----RCS 307 (500)
T ss_pred HHHhcCCCcCeEEEECCHHHHHHHHHHHhhcccCCceEEEecCCcCcEEECCCCCHHHHHHHHHHHHHhcCCC----CCC
Confidence 66656778999999999999999987442 179999999999999999999999999999999987664 466
Q ss_pred HHHHhhhcccc
Q psy11677 338 AIYNLADQGEM 348 (462)
Q Consensus 338 ~~~~~~~~~~~ 348 (462)
++..+..|+.|
T Consensus 308 a~~rv~V~~~i 318 (500)
T TIGR01238 308 ALRVLCVQEDV 318 (500)
T ss_pred CCceeEEcHhh
Confidence 66666666555
|
This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase. |
| >cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.2e-10 Score=118.81 Aligned_cols=194 Identities=18% Similarity=0.129 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhcc---------cc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRK---------IG 198 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~---------i~ 198 (462)
++.....|++|...... +++.|.++.++|..++..|.-. +...++.++ .|
T Consensus 21 v~~av~~a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~i~~l~~~~~~~~~~~g 100 (453)
T cd07115 21 VDAAVAAARAAFEAWSAMDPAERGRILWRLAELILANADELARLESLDTGKPIRAARRLDVPRAADTFRYYAGWADKIEG 100 (453)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55556666666554333 8888888888888776554321 112222222 01
Q ss_pred ccccccCC---CCCCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC----CeEE
Q psy11677 199 TFFTDASA---QSGGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY----PLHS 253 (462)
Q Consensus 199 t~~a~~~d---~~~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~----~~v~ 253 (462)
..+...+. ...+.|+||+++|+..- .|-.+ +.+.+-.|+ ..+++.+.++ ++++
T Consensus 101 ~~~~~~~~~~~~~~~~P~Gvv~~i~p~N-~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~-~~l~~~~~~aGlP~~~~~ 178 (453)
T cd07115 101 EVIPVRGPFLNYTVREPVGVVGAIVPWN-FPLMFAAWKVAPALAAGNTVVLKPAELTPLSA-LRIAELMAEAGFPAGVLN 178 (453)
T ss_pred ceecCCCCceEEEEecceeEEEEEcCCC-CHHHHHHHHHHHHHhcCCEEEEECCCCCcHHH-HHHHHHHHhcCcCchheE
Confidence 11000000 13478999999998322 34211 116667777 7777877776 8999
Q ss_pred eecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 254 QVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 254 ~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+|+. .+.+.+.|-.+..||.|.++||....+.|.+.+. .+||..-..|+..+||++|||+++|++.++.+|+.+-|-
T Consensus 179 ~v~g~~~~~~~~l~~~~~id~v~fTGs~~~g~~v~~~aa~~~~~~~lElgG~~p~iV~~dAdl~~aa~~i~~~~~~~~GQ 258 (453)
T cd07115 179 VVTGFGEVAGAALVEHPDVDKITFTGSTAVGRKIMQGAAGNLKRVSLELGGKSANIVFADADLDAAVRAAATGIFYNQGQ 258 (453)
T ss_pred EEecCchhHHHHHhcCCCCCEEEEECcHHHHHHHHHHHhhcCCeEEEecCCCCceEECCCCCHHHHHHHHHHHHHhccCC
Confidence 9983 3456666666678999999999999999987653 256554444999999999999999999999999986544
Q ss_pred CCchhHHHHHHhhhcccc
Q psy11677 331 NPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~ 348 (462)
.|.++..+..++.|
T Consensus 259 ----~C~a~~~v~V~~~i 272 (453)
T cd07115 259 ----MCTAGSRLLVHESI 272 (453)
T ss_pred ----CCCCCeEEEEcHHH
Confidence 55555555555544
|
4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD. |
| >cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-09 Score=114.80 Aligned_cols=133 Identities=21% Similarity=0.157 Sum_probs=101.2
Q ss_pred CCCCceeeEEEEe-CCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~l 264 (462)
.+.|+|||++|.. .. |-.+. ...+-.|+ ..+++.+.++ +++++|+. .+.+.+.
T Consensus 117 ~~~P~GVV~~I~p~N~--P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~ 193 (456)
T cd07110 117 RREPVGVVGLITPWNF--PLLMAAWKVAPALAAGCTVVLKPSELTSLTE-LELAEIAAEAGLPPGVLNVVTGTGDEAGAP 193 (456)
T ss_pred EEecceeEEEECCCCh--HHHHHHHHHHHHHHcCCEEEEECcccchHHH-HHHHHHHHHcCCCCCcEEEEecCchHHHHH
Confidence 4889999999986 33 64321 16666777 7777777777 89999983 4556666
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
|-.+..||.|...||...-+.|.+.+. ..||+....|++++||+++||+++|++.++.++..+-|- .|.++..+
T Consensus 194 L~~~~~v~~V~fTGs~~~g~~v~~~aa~~~~~~~lElgG~~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~rv 269 (456)
T cd07110 194 LAAHPGIDKISFTGSTATGSQVMQAAAQDIKPVSLELGGKSPIIVFDDADLEKAVEWAMFGCFWNNGQ----ICSATSRL 269 (456)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHHHhhcCCeEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCC----CCCCCceE
Confidence 666778999999999998877766541 379998889999999999999999999999999886554 55555555
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..+..|
T Consensus 270 ~V~~~i 275 (456)
T cd07110 270 LVHESI 275 (456)
T ss_pred EEcHHH
Confidence 444443
|
Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine. |
| >PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.5e-10 Score=120.45 Aligned_cols=190 Identities=14% Similarity=0.048 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------H-------HHHHhhcc--ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------I-------KQIVAGRK--IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~-------~~~~~~~~--i~t 199 (462)
+......|++|.+.... +++.|.++.+++..++..|.-. + +..+..++ .+.
T Consensus 56 v~~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~ 135 (524)
T PRK09407 56 VEAAFARARAAQRAWAATPVRERAAVLLRFHDLVLENREELLDLVQLETGKARRHAFEEVLDVALTARYYARRAPKLLAP 135 (524)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 55556666666654333 8888988888888777665532 1 11111111 000
Q ss_pred c-cc-ccCC----CCCCCCceeeEEEEe-CCCCcc-ccc-----------------ccccccchHHHHHhhcCCC----C
Q psy11677 200 F-FT-DASA----QSGGTPVEVLAEIWK-NETLNT-TVP-----------------KKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 200 ~-~a-~~~d----~~~~~PlGVi~~IyE-sr~~Pn-v~~-----------------~~ea~~sn~~~l~~al~~~----~ 250 (462)
+ +. ..+. ...+.|+|||++|+. .. |- .+. ...+-.|+ ..+++.+.++ +
T Consensus 136 ~~~~~~~~~~~~~~~~~~P~GVV~~I~P~N~--Pl~~~~~~~~~ALaaGN~VIlKPs~~tp~~~-~~l~~ll~eaGlP~g 212 (524)
T PRK09407 136 RRRAGALPVLTKTTELRQPKGVVGVISPWNY--PLTLAVSDAIPALLAGNAVVLKPDSQTPLTA-LAAVELLYEAGLPRD 212 (524)
T ss_pred ccccccCCCCceEEEEEecceEEEEEeCCCC--hHHHHHHHHHHHHHcCCEEEEECCCCCHHHH-HHHHHHHHHcCCCcc
Confidence 0 00 0110 124799999999987 44 62 111 16666777 7777877776 9
Q ss_pred eEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++++|+ +++....|++ .+|.|...||.+..+.|.+++. -+||.....|++++||++|||+++|++.++.++..
T Consensus 213 vv~~v~g~~~~~~~~L~~---~~d~V~fTGs~~~g~~v~~~aa~~~~~v~lElGGknp~iV~~dADl~~Aa~~i~~~~f~ 289 (524)
T PRK09407 213 LWQVVTGPGPVVGTALVD---NADYLMFTGSTATGRVLAEQAGRRLIGFSLELGGKNPMIVLDDADLDKAAAGAVRACFS 289 (524)
T ss_pred cEEEEecCCchHHHHHHh---cCCEEEEECCHHHHHHHHHHHHhcCCcEEEECCCCceeEECCCCCHHHHHHHHHHHHHh
Confidence 999998 3566666775 3899999999999999888652 38999999999999999999999999999999988
Q ss_pred CCCCCCchhHHHHHHhhhcccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+-|- .|.+...+..+..|
T Consensus 290 ~sGQ----~C~a~~rv~V~~~v 307 (524)
T PRK09407 290 NAGQ----LCISIERIYVHESI 307 (524)
T ss_pred cCCC----CCCCCcEEEEcHHH
Confidence 6544 45555555444443
|
|
| >cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.1e-10 Score=118.67 Aligned_cols=174 Identities=15% Similarity=0.099 Sum_probs=122.7
Q ss_pred HHHHHHhCCchhhcCchhcH----HH-----HHHHHhhccccccccc---------cC-C-----CCCCCCceeeEEEEe
Q psy11677 166 SATWALDRGVSVVICNGMQK----EA-----IKQIVAGRKIGTFFTD---------AS-A-----QSGGTPVEVLAEIWK 221 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~----~~-----~~~~~~~~~i~t~~a~---------~~-d-----~~~~~PlGVi~~IyE 221 (462)
+++.|.++.++|......|. .. +...++.++ ..+. ++ . ...+.|+||+++|..
T Consensus 74 ~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~l~---~~a~~~~~~~g~~~~~~~~~~~~~~~~P~GVv~~I~p 150 (476)
T cd07142 74 FADLLEKHADELAALETWDNGKPYEQARYAEVPLAARLFR---YYAGWADKIHGMTLPADGPHHVYTLHEPIGVVGQIIP 150 (476)
T ss_pred HHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---HHHHHHHHhcCcccccCCCceEEEEEeceeeEEEECC
Confidence 78888888888877766652 11 222222222 1111 11 1 124799999999986
Q ss_pred CCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEEeecC
Q psy11677 222 NETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLIIPRG 278 (462)
Q Consensus 222 sr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDliIPrG 278 (462)
.- .|-.+.- ..+-.++ ..+++.+.++ +.+++|+. .+.+.+.|..+..||.|...|
T Consensus 151 wN-~P~~~~~~~i~~ALaaGN~VV~KPs~~tp~~~-~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L~~~~~v~~v~fTG 228 (476)
T cd07142 151 WN-FPLLMFAWKVGPALACGNTIVLKPAEQTPLSA-LLAAKLAAEAGLPDGVLNIVTGFGPTAGAAIASHMDVDKVAFTG 228 (476)
T ss_pred Cc-cHHHHHHHHHHHHHHcCCEEEEECCCcccHHH-HHHHHHHHHcCcCcccEEEEeCCchhHHHHHhcCCCCCEEEEEC
Confidence 22 2643211 5556677 7777888776 89999994 566788887888899999999
Q ss_pred ChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 279 SSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 279 ~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
|...-+.|.+.+. .+||+....|++++||++|||+++|++.++.++..+-|- .|.+...+..+..|
T Consensus 229 s~~~G~~v~~~aa~~~~~~v~lElgGk~p~iV~~dADl~~Aa~~i~~~~f~~aGQ----~C~a~~rv~V~~~i 297 (476)
T cd07142 229 STEVGKIIMQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQ----CCCAGSRTFVHESI 297 (476)
T ss_pred cHHHHHHHHHHHHHcCCCeEEEECCCCCeeEECCCCCHHHHHHHHHHHHhcCCCC----CCCCCeeEEEeHHH
Confidence 9998888877542 379999999999999999999999999999999886444 55555555554443
|
Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. |
| >cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.4e-10 Score=116.33 Aligned_cols=163 Identities=16% Similarity=0.145 Sum_probs=113.7
Q ss_pred HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcc----ccccccc---cCC------CCCCCCceeeEEEEeCCC
Q psy11677 166 SATWALDRGVSVVICNGMQKEA--------IKQIVAGRK----IGTFFTD---ASA------QSGGTPVEVLAEIWKNET 224 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~----i~t~~a~---~~d------~~~~~PlGVi~~IyEsr~ 224 (462)
+++.|..+.+.+..++..|.-. +..+++.++ ....+.. .+. ...+.|+||+++|+...
T Consensus 29 ~~~~l~~~~~~l~~~~~~etG~~~~~~~~ei~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N- 107 (432)
T cd07078 29 LADLLEERREELAALETLETGKPIEEALGEVARAADTFRYYAGLARRLHGEVIPSPDPGELAIVRREPLGVVGAITPWN- 107 (432)
T ss_pred HHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCceEEEEEeecceEEEECCCc-
Confidence 7788888888887776655321 222233222 0001110 110 12378999999998743
Q ss_pred Cccc-cc-----------------ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhcCCCCccEEeecCChh
Q psy11677 225 LNTT-VP-----------------KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSD 281 (462)
Q Consensus 225 ~Pnv-~~-----------------~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~ 281 (462)
.|-. +. .+.+..+. ..+++.|.++ +++++++ +.+.+.+.|-...++|.|+..||..
T Consensus 108 ~P~~~~~~~~~~AL~aGN~vilkps~~~~~~~-~~l~~~l~~ag~p~~~~~~~~~~~~~~~~~l~~~~~i~~v~ftGs~~ 186 (432)
T cd07078 108 FPLLLAAWKLAPALAAGNTVVLKPSELTPLTA-LLLAELLAEAGLPPGVLNVVTGDGDEVGAALASHPRVDKISFTGSTA 186 (432)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHcCCCcCcEEEEecCchHHHHHHhcCCCCCEEEEECcHH
Confidence 3621 11 16667777 7777777776 8999998 3443555444556799999999999
Q ss_pred HHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 282 LVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 282 lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
..+.|.+.+. ..|++.+..|++++||+++||++.|++-+.++++.+-|-
T Consensus 187 ~~~~v~~~a~~~~~~~~~e~gg~~~~iV~~~ad~~~aa~~i~~~~~~~~Gq 237 (432)
T cd07078 187 VGKAIMRAAAENLKRVTLELGGKSPLIVFDDADLDAAVKGAVFGAFGNAGQ 237 (432)
T ss_pred HHHHHHHHHhhccCcEEEecCCCCeeEECCCCCHHHHHHHHHHHHHhccCC
Confidence 9888877663 389999999999999999999999999999999997665
|
The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer |
| >cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-09 Score=114.06 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=106.6
Q ss_pred CCCCceeeEEE-EeCCCCcccccc------------------cccccchHHHHH----hhcCCC----CeEEeec--CHH
Q psy11677 209 GGTPVEVLAEI-WKNETLNTTVPK------------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TRE 259 (462)
Q Consensus 209 ~~~PlGVi~~I-yEsr~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~ 259 (462)
.+.|+||+++| .+.. |..+.- ..+-.|+ ..++ ++|.++ +++|+|+ +++
T Consensus 92 ~~~P~GVv~~I~pwN~--P~~~~~~~~~~ALaaGN~VVlKps~~tp~~~-~~~~~~~~~~l~eaG~P~g~v~~v~g~~~~ 168 (436)
T cd07122 92 IAEPVGVIAALIPSTN--PTSTAIFKALIALKTRNAIIFSPHPRAKKCS-IEAAKIMREAAVAAGAPEGLIQWIEEPSIE 168 (436)
T ss_pred EeecccEEEEEeCCCC--chHHHHHHHHHHHHcCCcEEEECCcchhhHH-HHHHHHHHHHHHHcCCCchhEEEecCCChH
Confidence 47999999966 6777 864322 5556666 5655 555565 8999998 356
Q ss_pred HHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 260 EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 260 ~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
....|++.+ .||.|...||....+...++ ..|++..+.|++++||++|||+++|++.+++++..+.|- .|.++
T Consensus 169 ~~~~l~~~~-~v~~v~ftGs~~v~~~a~~~--~~~~~~elgG~~p~iV~~dADl~~A~~~i~~~~f~~~GQ----~C~a~ 241 (436)
T cd07122 169 LTQELMKHP-DVDLILATGGPGMVKAAYSS--GKPAIGVGPGNVPAYIDETADIKRAVKDIILSKTFDNGT----ICASE 241 (436)
T ss_pred HHHHHHcCC-CcCEEEEcCCHHHHHHHHhc--CCCEEEecCCCCeEEEcCCCCHHHHHHHHHHHhhccCCC----CCCCC
Confidence 566677655 59999999999998877665 599999999999999999999999999999999997664 55555
Q ss_pred HHhhhcccccccChhhHHHHHHhH
Q psy11677 340 YNLADQGEMDVSGLPCLLLFIRLG 363 (462)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~ 363 (462)
+.+..|..| +.+.+.+|.+.+
T Consensus 242 ~rv~V~~~i---~d~f~~~l~~~~ 262 (436)
T cd07122 242 QSVIVDDEI---YDEVRAELKRRG 262 (436)
T ss_pred CEEEEechh---HHHHHHHHHHhc
Confidence 555555533 445555555544
|
Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway. |
| >cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.1e-10 Score=119.22 Aligned_cols=132 Identities=18% Similarity=0.117 Sum_probs=95.0
Q ss_pred CCCCceeeEEEEeCCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|+..- .|-.+. ...+-.|+ ..+++.+.++ +++++|+ +.+.+.+.|
T Consensus 131 ~~~P~GvV~~I~p~N-~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~-~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~l 208 (482)
T cd07119 131 VREPVGVCGLITPWN-YPLLQAAWKLAPALAAGNTVVIKPSEVTPLTT-IALFELIEEAGLPAGVVNLVTGSGATVGAEL 208 (482)
T ss_pred EEeeeeeEEEEcCCc-hHHHHHHHHHHHHHhcCCEEEEECCccccHHH-HHHHHHHHHcCCCcCcEEEEecCcHHHHHHH
Confidence 589999999998632 264221 15555677 6777877776 9999998 455566666
Q ss_pred cCCCCccEEeecCChhHHHHHHh----hCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQ----KSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~----~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
-.+..||.|...||...-+.|.+ +.+ -++++.| |...++|++|||+++|++-++.+++.+-|- .|.++..
T Consensus 209 ~~~~~v~~V~fTGs~~~g~~i~~~aa~~~~-~~~lElG-Gkn~~iV~~dADl~~Aa~~i~~~~~~~~GQ----~C~a~~~ 282 (482)
T cd07119 209 AESPDVDLVSFTGGTATGRSIMRAAAGNVK-KVALELG-GKNPNIVFADADFETAVDQALNGVFFNAGQ----VCSAGSR 282 (482)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHHhcCC-cEEEECC-CCCceEECCCCCHHHHHHHHHHHHHhcCCC----CCCCCeE
Confidence 66668999999999985444444 432 3456666 888889999999999999999999986443 5666666
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..++.|
T Consensus 283 v~V~~~i 289 (482)
T cd07119 283 LLVEESI 289 (482)
T ss_pred EEEcHHH
Confidence 6555554
|
Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde. |
| >cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.8e-10 Score=118.87 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=103.7
Q ss_pred CCCCceeeEEEEe-CCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++|.. .. |-.+. .+++-.|+ ..+++++.++ +++++|+ +.+.+.+.
T Consensus 144 ~r~P~GVv~~I~PwN~--P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~~aglP~gv~~~v~g~~~~~~~~ 220 (486)
T cd07140 144 KREPIGVCGIVIPWNY--PLMMLAWKMAACLAAGNTVVLKPAQVTPLTA-LKFAELTVKAGFPKGVINILPGSGSLVGQR 220 (486)
T ss_pred EeeccceEEEEcCCch--HHHHHHHHHHHHHHhCCEEEEECCccCcHHH-HHHHHHHHHcCcCCCcEEEEecCchHHHHH
Confidence 4789999999984 55 75311 16666777 7777888776 9999999 56677777
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
|..+..||.|.++||...-+.|.+.+. -.||.....|++++||++|||++.|++.++.++..+ ....|.++..
T Consensus 221 L~~~~~v~~v~ftGs~~~g~~i~~~aa~~~l~~v~lElGGk~~~iV~~dadl~~a~~~i~~~~~~~----~GQ~C~a~~r 296 (486)
T cd07140 221 LSDHPDVRKLGFTGSTPIGKHIMKSCAVSNLKKVSLELGGKSPLIIFADCDMDKAVRMGMSSVFFN----KGENCIAAGR 296 (486)
T ss_pred HhcCCCCCEEEEECcHHHHHHHHHHHHhcCCCeEEEEcCCCCceEECCCCCHHHHHHHHHHHHHhc----cCCCCCCCcE
Confidence 777888999999999999999987763 257776667999999999999999999999999874 3445666666
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..+..|
T Consensus 297 l~V~~~i 303 (486)
T cd07140 297 LFVEESI 303 (486)
T ss_pred EEEcHHH
Confidence 6655544
|
10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids. |
| >cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-09 Score=114.89 Aligned_cols=120 Identities=20% Similarity=0.160 Sum_probs=90.8
Q ss_pred CCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|+..- .|-.+ +...+..++ ..+++.+.++ +++|+|+. ...+.+.|
T Consensus 114 ~~~P~Gvv~~i~p~N-~P~~~~~~~~~~AL~aGN~VIlKps~~~~~~~-~~l~~~l~~aglP~g~v~~v~~~~~~~~~~l 191 (451)
T cd07103 114 IKQPVGVVAAITPWN-FPAAMITRKIAPALAAGCTVVLKPAEETPLSA-LALAELAEEAGLPAGVLNVVTGSPAEIGEAL 191 (451)
T ss_pred EEeeceEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCccCcHHH-HHHHHHHHHcCCCcccEEEEecCchhHHHHH
Confidence 478999999998732 26421 116667788 8888888776 99999984 44466666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||+|...||...-+.+.+.+ +..|++....|++++||+++||++.|++.++.++..+.|-
T Consensus 192 ~~~~~vd~V~ftGs~~~g~~v~~~aa~~~~~~~lelgG~~~~iV~~dadl~~aa~~i~~~~~~~~GQ 258 (451)
T cd07103 192 CASPRVRKISFTGSTAVGKLLMAQAADTVKRVSLELGGNAPFIVFDDADLDKAVDGAIASKFRNAGQ 258 (451)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHHHhcCCcEEEECCCCCeEEECCCCCHHHHHHHHHHHHHHhcCC
Confidence 5666799999999887766655532 1356544445999999999999999999999999988775
|
Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species. |
| >cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-09 Score=112.29 Aligned_cols=133 Identities=20% Similarity=0.173 Sum_probs=92.3
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
++.|+||+++|...- .|-. +.. ..+-.+.+..|.+.|.++ +++|+|+ +.+.+.+.|
T Consensus 95 ~~~P~GVv~~i~p~N-~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~L 173 (431)
T cd07104 95 RRVPLGVVGVISPFN-FPLILAMRSVAPALALGNAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGVLNVVPGGGSEIGDAL 173 (431)
T ss_pred EEeeeeeEEEECCCC-cHHHHHHHHHHHHHHcCCeEEeeCCCCChHHHHHHHHHHHHHcCCCcccEEEeeCCchhHHHHH
Confidence 478999999996322 2421 111 333444313455777776 8999999 455565555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
-.+..+|+|..+||.+..++|.+.+. +-++++.| |++++||+++||+++|++.++.++..+-|- .|.+...+
T Consensus 174 ~~~~~i~~V~ftGs~~~g~~v~~~aa~~~~~~~lelg-G~~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~~v 248 (431)
T cd07104 174 VEHPRVRMISFTGSTAVGRHIGELAGRHLKKVALELG-GNNPLIVLDDADLDLAVSAAAFGAFLHQGQ----ICMAAGRI 248 (431)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHHhhcCCcEEEEcC-CCCeEEECCCCCHHHHHHHHHHHHHhcCCC----CcccCcEE
Confidence 55667999999999999998876431 24455555 999999999999999999999999987665 44444444
Q ss_pred hhccc
Q psy11677 343 ADQGE 347 (462)
Q Consensus 343 ~~~~~ 347 (462)
..++.
T Consensus 249 ~v~~~ 253 (431)
T cd07104 249 LVHES 253 (431)
T ss_pred EEcHH
Confidence 44433
|
ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences. |
| >cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-09 Score=115.22 Aligned_cols=130 Identities=22% Similarity=0.241 Sum_probs=101.0
Q ss_pred CCCCceeeEEEEeCCCCccc-------------------cc--ccccccchHHHHHhhcCCC---CeEEeec-CHHHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTT-------------------VP--KKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISD 263 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv-------------------~~--~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ 263 (462)
++.|+||+++|.. +|. +. .+.+-.|+ ..+.+.+.+. +++|+|. +++....
T Consensus 98 ~r~P~GVv~~I~p----~N~P~~~~~~~~~~ALaaGN~VvlKps~~tp~~~-~~l~~~~~~~~P~gvv~~v~g~~~~~~~ 172 (432)
T cd07137 98 VSEPLGVVLVISA----WNFPFLLSLEPVIGAIAAGNAVVLKPSELAPATS-ALLAKLIPEYLDTKAIKVIEGGVPETTA 172 (432)
T ss_pred EEecCcEEEEEcC----CchHHHHHHHHHHHHHhcCCEEEEECCCcChHHH-HHHHHHHHHhCCcCeEEEEeCCHHHHHH
Confidence 5899999999952 342 10 05566677 6666555554 9999998 6777778
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
|+.. .||.|.++||....+.|.+.+. .+|++....|++++||++|||+++|++.++.++... |....|.+...
T Consensus 173 L~~~--~i~~v~fTGs~~~g~~v~~~aa~~~~~~~lElgG~np~iV~~dAdl~~aa~~i~~~~f~~---~~GQ~C~a~~r 247 (432)
T cd07137 173 LLEQ--KWDKIFFTGSPRVGRIIMAAAAKHLTPVTLELGGKCPVIVDSTVDLKVAVRRIAGGKWGC---NNGQACIAPDY 247 (432)
T ss_pred HHhC--CCCEEEEECChHHHHHHHHHHHhcCCcEEEEccCCCcEEEcCCCCHHHHHHHHHHHhhhc---cCCCcccCCCE
Confidence 8873 4999999999999999877762 489999999999999999999999999999998731 23446777777
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..|+.|
T Consensus 248 v~V~~~i 254 (432)
T cd07137 248 VLVEESF 254 (432)
T ss_pred EEEcHHH
Confidence 7666655
|
Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress. |
| >cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-09 Score=111.05 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=108.1
Q ss_pred CCCCceeeEEEE-eCCCCcccccc------------------cccccchHHHHH----hhcCCC----CeEEeec--CHH
Q psy11677 209 GGTPVEVLAEIW-KNETLNTTVPK------------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TRE 259 (462)
Q Consensus 209 ~~~PlGVi~~Iy-Esr~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~ 259 (462)
++.|+||+++|+ +.. |-.+.- ..+-.|. ..++ ++|.++ +++|+|+ +++
T Consensus 92 ~~~P~GVV~~I~PwN~--P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~l~~l~~~~l~~aG~P~gvv~~v~g~~~~ 168 (439)
T cd07081 92 IAEPIGVVASITPSTN--PTSTVIFKSLISLKTRNSIIFSPHPRAKKVT-QRAATLLLQAAVAAGAPENLIGWIDNPSIE 168 (439)
T ss_pred EEecceEEEEECCCcc--hHHHHHHHHHHHHhcCCeEEEECCccchHHH-HHHHHHHHHHHHHcCCChhhEEEEcCCCHH
Confidence 489999999998 566 753211 4555565 5555 555665 8999998 456
Q ss_pred HHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 260 EISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 260 ~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
....|++..+ ||+|..+||..+.+...++ ..||+..+.|++++||++|||+++|++-++.++..+.|-
T Consensus 169 ~g~~L~~~~~-V~~V~FTGs~~v~~~aa~~--~k~~~lElGGk~p~IV~~dADl~~Aa~~iv~~~~~~~GQ--------- 236 (439)
T cd07081 169 LAQRLMKFPG-IGLLLATGGPAVVKAAYSS--GKPAIGVGAGNTPVVIDETADIKRAVQSIVKSKTFDNGV--------- 236 (439)
T ss_pred HHHHHHcCCC-CCEEEEECCHHHHHHHHhc--CCCEEEEcCCCCeEEEcCCCCHHHHHHHHHHHHhcCCCC---------
Confidence 5566666554 9999999999988888776 479999999999999999999999999999999999888
Q ss_pred HHhhhcccc--cccChhhHHHHHHhH
Q psy11677 340 YNLADQGEM--DVSGLPCLLLFIRLG 363 (462)
Q Consensus 340 ~~~~~~~~~--~~~~~~~~~~~~~~~ 363 (462)
.|.+.+-++ +.++.+.+.+|.+.+
T Consensus 237 ~C~a~~rv~V~~~i~d~f~~~l~~~~ 262 (439)
T cd07081 237 ICASEQSVIVVDSVYDEVMRLFEGQG 262 (439)
T ss_pred CCCCCCEEEEcHHHHHHHHHHHHHcC
Confidence 566655544 455666777776664
|
Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway. |
| >PLN02466 aldehyde dehydrogenase family 2 member | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-09 Score=118.42 Aligned_cols=178 Identities=19% Similarity=0.114 Sum_probs=123.9
Q ss_pred HHHHHHhCCchhhcC----chhcHHH-----HHHHHhhcc---------ccccccccCC---CCCCCCceeeEEEEeCCC
Q psy11677 166 SATWALDRGVSVVIC----NGMQKEA-----IKQIVAGRK---------IGTFFTDASA---QSGGTPVEVLAEIWKNET 224 (462)
Q Consensus 166 iA~aL~~~~~~IL~A----N~~D~~~-----~~~~~~~~~---------i~t~~a~~~d---~~~~~PlGVi~~IyEsr~ 224 (462)
+++.|+++.++|..+ +.+.+.. +...+.-++ -|..+-.-.. ...+.|+||+++|-.-.
T Consensus 128 ~a~~l~~~~~ela~~~~~e~GK~~~~a~~~Ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~P~GVV~~I~PwN- 206 (538)
T PLN02466 128 FADLLEKHNDELAALETWDNGKPYEQSAKAELPMFARLFRYYAGWADKIHGLTVPADGPHHVQTLHEPIGVAGQIIPWN- 206 (538)
T ss_pred HHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCceEEEEEecceEEEEECCCc-
Confidence 888888888888776 6555432 222222111 0111100000 12488999999994211
Q ss_pred Ccccc----------------c--ccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEEeecCChh
Q psy11677 225 LNTTV----------------P--KKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLIIPRGSSD 281 (462)
Q Consensus 225 ~Pnv~----------------~--~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~ 281 (462)
.|-.+ . ...+-.|+ ..+++.+.++ +++|+|+. .+.+.+.|..+..||.|...||..
T Consensus 207 ~P~~l~~~~i~pALaaGN~VVlKPs~~tp~~~-~~l~~ll~eaGlP~gvv~vv~g~~~~~~~~L~~~~~vd~V~FTGS~~ 285 (538)
T PLN02466 207 FPLLMFAWKVGPALACGNTIVLKTAEQTPLSA-LYAAKLLHEAGLPPGVLNVVSGFGPTAGAALASHMDVDKLAFTGSTD 285 (538)
T ss_pred hHHHHHHHHHhHHHHcCCEEEeECCCCCcHHH-HHHHHHHHhcCCCcccEEEEecCchhHHHHHhcCCCcCEEEEECCHH
Confidence 25321 1 15666677 7777888887 99999984 556777777888899999999999
Q ss_pred HHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhccccc
Q psy11677 282 LVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMD 349 (462)
Q Consensus 282 lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (462)
..+.|.+.+. .+||+....|++++||++|||+++|++.++.++..+.|- .|.+...+..|+.|.
T Consensus 286 ~G~~v~~~aa~~~l~pv~lElGGknp~iV~~dADl~~Aa~~i~~~~f~~~GQ----~C~a~~rv~V~~~i~ 352 (538)
T PLN02466 286 TGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQ----CCCAGSRTFVHERVY 352 (538)
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCeEEEcCCCCHHHHHHHHHHHHHhhcCC----CcCcCcEEEEcHHHH
Confidence 9998877552 379999999999999999999999999999999987766 566655565555553
|
|
| >cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-09 Score=115.05 Aligned_cols=190 Identities=19% Similarity=0.097 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---- 204 (462)
+......|++|.+.+.. +++.|.++.++|......|.-. +...++.++ ..+.+
T Consensus 34 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~---~~~~~~~~~ 110 (465)
T cd07151 34 VDEAYRAAAAAQKEWAATLPQERAEILEKAAQILEERRDEIVEWLIRESGSTRIKANIEWGAAMAITR---EAATFPLRM 110 (465)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHhHHHh
Confidence 55656667766654332 8888888888888776655311 333333333 22221
Q ss_pred ---------CC---CCCCCCceeeEEEEe-CCCCccc----------------ccc--cccccchHHHHHhhcCCC----
Q psy11677 205 ---------SA---QSGGTPVEVLAEIWK-NETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY---- 249 (462)
Q Consensus 205 ---------~d---~~~~~PlGVi~~IyE-sr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~---- 249 (462)
+. ...+.|+||+++|.. .. |-. +.. ..+-.+....+.+.+.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~--P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~~~~l~~~l~~aG~P~ 188 (465)
T cd07151 111 EGRILPSDVPGKENRVYREPLGVVGVISPWNF--PLHLSMRSVAPALALGNAVVLKPASDTPITGGLLLAKIFEEAGLPK 188 (465)
T ss_pred cCccccCCCCCceeEEEEecceEEEEECCCCh--HHHHHHHHHHHHHHcCCEEEEECCCCCcHhHHHHHHHHHHHcCcCc
Confidence 11 124899999999986 44 621 111 233333202344777776
Q ss_pred CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 250 PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 250 ~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
+++|+|+ +...+.+.|-.+..+|.|.-.||...-+.|.+.+ -+-++++.| |++++||++|||+++|++-++.++.
T Consensus 189 gvv~~v~g~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~~~lElG-Gk~p~iV~~daDl~~Aa~~i~~~~f 267 (465)
T cd07151 189 GVLNVVVGAGSEIGDAFVEHPVPRLISFTGSTPVGRHIGELAGRHLKKVALELG-GNNPFVVLEDADIDAAVNAAVFGKF 267 (465)
T ss_pred cceEEEecCchhhHHHHhcCCCCCEEEEECCHHHHHHHHHHHHhcCCcEEEECC-CCCeEEECCCCCHHHHHHHHHHHHH
Confidence 8999998 3455655555566699999999998777665442 114456666 9999999999999999999999998
Q ss_pred CCCCCCCchhHHHHHHhhhcccc
Q psy11677 326 VLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
.+-|- .|.+...+..|..|
T Consensus 268 ~~~GQ----~C~a~~rv~V~~~i 286 (465)
T cd07151 268 LHQGQ----ICMAINRIIVHEDV 286 (465)
T ss_pred hcCCC----CCcCCcEEEEeHHH
Confidence 75444 56665555555544
|
NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD. |
| >cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.3e-09 Score=105.78 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=78.7
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-C--CCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-E--EGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~--p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
|.+|..|+.+|..++|+.+.++|||+ ||+.||+ . |+++.|++++++|+.+++ .+|..-++++ +...+.+
T Consensus 212 GGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA-----~~GakvLHP~--ai~pa~~ 283 (304)
T cd04248 212 GYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLA-----NLGMEAIHPK--AAKGLRQ 283 (304)
T ss_pred CcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHH-----HcChhhcCHH--HHHHHHH
Confidence 78999999999999999999999996 9999998 5 689999999999999885 3455556775 7888999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.+|+++|.|..+|+ ..||+|.
T Consensus 284 ~~IPi~Vkntf~P~---------~~GTlIt 304 (304)
T cd04248 284 AGIPLRVKNTFEPD---------HPGTLIT 304 (304)
T ss_pred cCCeEEEecCCCCC---------CCCceeC
Confidence 99999999998874 5699884
|
Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. |
| >cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=108.42 Aligned_cols=120 Identities=23% Similarity=0.221 Sum_probs=93.7
Q ss_pred CCCCceeeEEEEeCCCCcc-c---------------cc--ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNT-T---------------VP--KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pn-v---------------~~--~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|...- .|- . +. .+.+-.+. ..|.+.+.++ +++++|+ +.+.+.+.|
T Consensus 120 ~~~P~GVv~~i~p~N-~P~~~~~~~~~~ALaaGN~VI~Kps~~~p~~~-~~l~~~l~~ag~P~gvv~~v~g~~~~~~~~l 197 (453)
T cd07149 120 IREPIGVVAAITPFN-FPLNLVAHKVGPAIAAGNAVVLKPASQTPLSA-LKLAELLLEAGLPKGALNVVTGSGETVGDAL 197 (453)
T ss_pred EeecceEEEEECCCC-ChHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHcCcCccceEEeecCchHHHHHH
Confidence 378999999994322 232 1 11 15555666 6677777775 9999999 456666666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..+|.|+..||....+.|.+.+...|++....|++++||++|||+++|++-++.++..+.|-
T Consensus 198 ~~~~~v~~V~ftGs~~~g~~i~~~a~~~~~~lelGGk~p~iV~~dadl~~aa~~i~~~~~~~~GQ 262 (453)
T cd07149 198 VTDPRVRMISFTGSPAVGEAIARKAGLKKVTLELGSNAAVIVDADADLEKAVERCVSGAFANAGQ 262 (453)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHcCCCceeeecCCCceEEECCCCCHHHHHHHHHHHHHHhcCC
Confidence 66777999999999999999998875357777777999999999999999999999999998766
|
Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD. |
| >cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.6e-09 Score=109.48 Aligned_cols=118 Identities=23% Similarity=0.280 Sum_probs=90.7
Q ss_pred CCCceeeEEEEeCCCCc-cc---------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLN-TT---------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~P-nv---------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|...- .| .. +.. ..+-.|+ ..+++.+.++ +++++|+ +.+.+.+.|-
T Consensus 121 ~~P~Gvv~~I~p~N-~P~~~~~~~~~~AL~aGN~VI~Kps~~~p~~~-~~l~~~l~~ag~P~g~~~~v~g~~~~~~~~l~ 198 (453)
T cd07094 121 REPVGVVLAITPFN-FPLNLVAHKLAPAIATGCPVVLKPASKTPLSA-LELAKILVEAGVPEGVLQVVTGEREVLGDAFA 198 (453)
T ss_pred EeccceEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHcCCCcCcEEEEeCCCchHHHHHh
Confidence 78999999994222 24 11 111 5566676 6667777775 9999998 4555666666
Q ss_pred CCCCccEEeecCChhHHHHHHhhCCCcc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQHIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
.+..+|.|+..||...-+.|.+.+...| +++.| |++++||+++||+++|++-++.++..+-|-
T Consensus 199 ~~~~v~~V~fTGs~~~g~~v~~~a~~~~~~lelG-Gk~~~iV~~dadl~~aa~~i~~~~~~~~GQ 262 (453)
T cd07094 199 ADERVAMLSFTGSAAVGEALRANAGGKRIALELG-GNAPVIVDRDADLDAAIEALAKGGFYHAGQ 262 (453)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHcCCCceEEecC-CCCceEECCCCCHHHHHHHHHHHHHHhcCC
Confidence 6678999999999999999999885345 45555 999999999999999999999999987665
|
ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences. |
| >PRK09181 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.1e-09 Score=112.29 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=80.2
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-C--CCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-E--EGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~--p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
|.+|+.|+.+|..|+||.+.+||||+ ||+.||+ . |+++.|+++++.|+.+|+ ..|..-++++ +...+.+
T Consensus 218 GGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA-----~~GAkVLHp~--ti~pa~~ 289 (475)
T PRK09181 218 GYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLA-----NLGMEAIHPK--AAKGLRQ 289 (475)
T ss_pred ChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHH-----HcCchhcCHH--HHHHHHH
Confidence 77899999999999999999999997 9999998 6 799999999999999885 3455556775 7778999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
.|||++|.|..+|+ ..||+|...
T Consensus 290 ~~Ipi~V~nt~~p~---------~~GT~I~~~ 312 (475)
T PRK09181 290 AGIPLRIKNTFEPE---------HPGTLITKD 312 (475)
T ss_pred cCCeEEEecCCCCC---------CCCeEEecC
Confidence 99999999988773 569999754
|
|
| >COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6e-09 Score=97.43 Aligned_cols=95 Identities=23% Similarity=0.388 Sum_probs=77.9
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGV 111 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv 111 (462)
..+|++|.++|.++++..+++.|||||+|+.+| +++++++|...|+.. +..+ -.+..++ .+.+.++
T Consensus 116 VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~---~~kLv~eI~A~dl~~---~~t~---vD~~~P~-----Ll~k~~m 181 (212)
T COG2054 116 VTSDSISVWIAAKAGATEVVKATDVDGIYEEDP---KGKLVREIRASDLKT---GETS---VDPYLPK-----LLVKYKM 181 (212)
T ss_pred ecccHHHHHHHHHcCCcEEEEEecCCcccccCC---cchhhhhhhHhhccc---Cccc---ccchhhH-----HHHHcCC
Confidence 689999999999999999999999999999875 569999999988764 1112 2333444 5678899
Q ss_pred eEEEEeCCChhHHHHHHcCCc-cccccccC
Q psy11677 112 SVVICNGMQKEAIKQIVAGRK-IGTFFTDA 140 (462)
Q Consensus 112 ~v~I~sG~~~~~L~~~l~g~~-~GT~I~~~ 140 (462)
.++++||..|+++..++.|+. +||.|.+.
T Consensus 182 ~~~Vvng~~pervi~~lrGk~~v~T~Ivg~ 211 (212)
T COG2054 182 NCRVVNGKEPERVILALRGKEVVGTLIVGG 211 (212)
T ss_pred ceEEECCCCHHHHHHHHhccccceEEEeCC
Confidence 999999999999999999864 69998753
|
|
| >PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.2e-10 Score=118.49 Aligned_cols=178 Identities=20% Similarity=0.228 Sum_probs=123.3
Q ss_pred cHHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccC--
Q psy11677 148 PVEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDAS-- 205 (462)
Q Consensus 148 ~~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~-- 205 (462)
.+......|++|.+.+.. +++.|.++.+++......|.-. +...++.++ ..++..
T Consensus 30 ~v~~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~---~~~~~~~~ 106 (462)
T PF00171_consen 30 DVDRAVEAARAAFKEWSKLPAAERARILERFADLLEERRDELAELIALETGKPIAEARGEVDRAIDFLR---YYADAARK 106 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhh---hhhhcccc
Confidence 366666777777664333 8888888888887777765332 233333332 211111
Q ss_pred --------C-----CCCCCCceeeEEEEeCCCCcc-c---------------c--cccccccchHHHHHhhcCCC----C
Q psy11677 206 --------A-----QSGGTPVEVLAEIWKNETLNT-T---------------V--PKKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 206 --------d-----~~~~~PlGVi~~IyEsr~~Pn-v---------------~--~~~ea~~sn~~~l~~al~~~----~ 250 (462)
+ ...+.|+||+++|.... .|- . + +...+-.|+ ..+++.+.++ +
T Consensus 107 ~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~n-~P~~~~~~~~~~ALaaGN~VVlkps~~~~~~~-~~l~~~~~~AglP~g 184 (462)
T PF00171_consen 107 LAGEVLPSDPGSRNYTRREPLGVVLIITPWN-FPLYLAVWKIAPALAAGNTVVLKPSEQAPLTA-LLLAELLEEAGLPPG 184 (462)
T ss_dssp HTEEEEEESTTEEEEEEEEE-SEEEEEE-SS-SCTHHHHHHHHHHHHTT-EEEEEEBTTSHHHH-HHHHHHHHHHTSTTT
T ss_pred eehhhcccccccccccccccccceeeccccc-ccccccccchhhhhcccccceeeecccccccc-ccchhhccccccccc
Confidence 1 12488999999996433 232 1 1 116677777 7777777664 9
Q ss_pred eEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 251 LHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 251 ~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
++++|+. ..++.+.|-.+..||+|.-.||....+.|.+.+. .+||+..+.|++++||+++||+++|++-++.++..+
T Consensus 185 vv~vv~g~~~~~~~~l~~~~~v~~v~ftGs~~~g~~i~~~a~~~~~~v~lelgG~~p~iV~~daDld~aa~~iv~~~~~~ 264 (462)
T PF00171_consen 185 VVNVVPGDGSEVGEALVSHPDVDLVSFTGSTATGRAIAKAAAKNLKPVVLELGGKNPVIVDPDADLDKAAEAIVRGAFFN 264 (462)
T ss_dssp SEEEECSSTHHHHHHHHHTTTEEEEEEESEHHHHHHHHHHHHTTTSEEEEEECEEEEEEE-TTSHHHHHHHHHHHHHHGG
T ss_pred cccccccccccccceeeeccccceeeecchhhhhhhhhhhcccccccccccccccceeeEecccccccccccccchhccc
Confidence 9999984 4444444445556999999999999998887652 489999999999999999999999999999999988
Q ss_pred CCC
Q psy11677 328 QGL 330 (462)
Q Consensus 328 ~~~ 330 (462)
-|-
T Consensus 265 ~GQ 267 (462)
T PF00171_consen 265 SGQ 267 (462)
T ss_dssp GGT
T ss_pred ccc
Confidence 776
|
2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A .... |
| >cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-09 Score=112.98 Aligned_cols=173 Identities=16% Similarity=0.128 Sum_probs=118.3
Q ss_pred HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc---------CC-------CCCCCCceeeEEE--
Q psy11677 166 SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---------SA-------QSGGTPVEVLAEI-- 219 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---------~d-------~~~~~PlGVi~~I-- 219 (462)
+++.|.++.+++..+...|.-. +...++.++ ..+.. +. ..++.|+||+++|
T Consensus 31 ~a~~l~~~~~~la~~~~~e~Gk~~~~~~~ei~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~p 107 (432)
T cd07105 31 AADLLESRRDEFIEAMMEETGATAAWAGFNVDLAAGMLR---EAASLITQIIGGSIPSDKPGTLAMVVKEPVGVVLGIAP 107 (432)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHhcCeecccCCCCceeEEEEecceEEEEECC
Confidence 7788888887777666554422 222333332 21111 10 1247899999999
Q ss_pred EeCCCCccc---------------c--cccccccchHHHHHhhcCCC----CeEEeecC-H---HHHHHHhcCCCCccEE
Q psy11677 220 WKNETLNTT---------------V--PKKHAKTSQCKYFTKMLPRY----PLHSQVST-R---EEISDLLSMEKHIDLI 274 (462)
Q Consensus 220 yEsr~~Pnv---------------~--~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r---~~~~~ll~~~~~iDli 274 (462)
|... ... + +...+-.|+ ..+.+.+.++ +++|+|+. . ..+.+.|-.+..||.|
T Consensus 108 ~N~P--~~~~~~~~~~ALaaGN~VVlKps~~~p~~~-~~l~~~~~~aGlP~gv~~~v~g~~~~~~~~~~~l~~~~~v~~v 184 (432)
T cd07105 108 WNAP--VILGTRAIAYPLAAGNTVVLKASELSPRTH-WLIGRVFHEAGLPKGVLNVVTHSPEDAPEVVEALIAHPAVRKV 184 (432)
T ss_pred cCcH--HHHHHHHHHHHHhcCCEEEEECCccChHHH-HHHHHHHHHcCcCCCcEEEEeCCCCchHHHHHHHhcCCCCCEE
Confidence 4332 221 1 115666777 7777888776 99999983 2 2355555556679999
Q ss_pred eecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 275 IPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 275 IPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
...||...-+.|.+.+ +.+||+....|++++||+++||+++|++-++.++..+- ...|.+...+..|..|
T Consensus 185 ~ftGs~~~g~~i~~~aa~~~~~~~lElgGk~p~iV~~dadl~~aa~~i~~~~~~~~----GQ~C~a~~~v~V~~~i 256 (432)
T cd07105 185 NFTGSTRVGRIIAETAAKHLKPVLLELGGKAPAIVLEDADLDAAANAALFGAFLNS----GQICMSTERIIVHESI 256 (432)
T ss_pred EEECCHHHHHHHHHHHHhcCCeEEEeCCCCCceEECCCCCHHHHHHHHHHHHHhcC----CCCCcCCceEEEcHHH
Confidence 9999999988888654 24899999999999999999999999999998887744 4466666666666555
|
Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD. |
| >cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-09 Score=112.17 Aligned_cols=118 Identities=21% Similarity=0.201 Sum_probs=92.7
Q ss_pred CCCCceeeEEEEe-CCCCccc-----------------cc-ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTT-----------------VP-KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv-----------------~~-~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++|+. .. |-. ++ ...+..+. ..|.+.+.++ +++|+|+ +.+....|
T Consensus 113 ~~~P~GVv~~i~p~N~--P~~~~~~~l~~ALaaGN~VVlKps~~~~~~~-~~l~~~l~~aGlP~g~~~~v~g~~~~~~~L 189 (452)
T cd07102 113 RREPLGVVLIIAPWNY--PYLTAVNAVIPALLAGNAVILKHSPQTPLCG-ERFAAAFAEAGLPEGVFQVLHLSHETSAAL 189 (452)
T ss_pred EEEeccEEEEEcCCch--HHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHhcCCCcCcEEEEeCCchhHHHH
Confidence 4889999999986 33 631 11 14555555 6666888887 9999998 45655566
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+. +..||.|...||...-+.|.+.+. -+||.....|++++||++|||++.|++.++.++..+.|-
T Consensus 190 ~~-~~~v~~V~fTGs~~~g~~v~~~a~~~~~~v~lelgG~~~~iV~~dADl~~aa~~i~~~~~~~~GQ 256 (452)
T cd07102 190 IA-DPRIDHVSFTGSVAGGRAIQRAAAGRFIKVGLELGGKDPAYVRPDADLDAAAESLVDGAFFNSGQ 256 (452)
T ss_pred hc-CCCCCEEEEECcHHHHHHHHHHHHhcCCcEEEECCCCCceEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 65 567999999999998777766531 389998889999999999999999999999999998775
|
PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD. |
| >cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-09 Score=112.59 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=97.7
Q ss_pred CCCCceeeEEEEe-CCCCcccc----------------cc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTTV----------------PK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv~----------------~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
++.|+|||++|.. .. |-.+ .. .++-.|+ ..+++.+.++ +++++|+ +.+.+.+.
T Consensus 116 ~~~P~GvV~~I~p~N~--P~~~~~~~i~~ALaaGN~Vi~Kps~~~p~~~-~~l~~~~~~aG~P~g~~~~v~g~~~~~~~~ 192 (454)
T cd07118 116 LREPIGVVGIITPWNF--PFLILSQKLPFALAAGCTVVVKPSEFTSGTT-LMLAELLIEAGLPAGVVNIVTGYGATVGQA 192 (454)
T ss_pred EeecceEEEEECCCCc--HHHHHHHHHHHHHhcCCEEEEECCCCCcHHH-HHHHHHHHhcCCCccceEEEecCCchHHHH
Confidence 4799999999985 33 6421 11 6666777 7777888777 8999998 45557777
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
|-.+..||.|...||...-+.|.+.+ +..|++.-..|++++||++|||+++|++-++.++..+-|- .|.+...+
T Consensus 193 L~~~~~v~~v~ftGs~~~g~~i~~~aa~~~~~~~lelgG~n~~iV~~dAdl~~aa~~i~~~~f~~~GQ----~C~a~~rv 268 (454)
T cd07118 193 MTEHPDVDMVSFTGSTRVGKAIAAAAARNLKKVSLELGGKNPQIVFADADLDAAADAVVFGVYFNAGE----CCNSGSRL 268 (454)
T ss_pred HhcCCCCCEEEEECcHHHHHHHHHHHHhcCCcEEeccCCCCceEECCCCCHHHHHHHHHHHHHhccCC----CCCCCceE
Confidence 77778899999999987666655532 1244544455999999999999999999999999986443 56666666
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..|+.|
T Consensus 269 ~V~~~i 274 (454)
T cd07118 269 LVHESI 274 (454)
T ss_pred EEcHHH
Confidence 555554
|
Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase. |
| >PLN02315 aldehyde dehydrogenase family 7 member | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.1e-09 Score=112.61 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=101.1
Q ss_pred CCCCceeeEEEEe-CCCCccc----------------ccc--cccccchHHH----HHhhcCCC----CeEEeecCHHHH
Q psy11677 209 GGTPVEVLAEIWK-NETLNTT----------------VPK--KHAKTSQCKY----FTKMLPRY----PLHSQVSTREEI 261 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv----------------~~~--~ea~~sn~~~----l~~al~~~----~~v~~v~~r~~~ 261 (462)
++.|+|||++|.. .. |-. +.. +++-.|+ .. +.+.+.++ +.+++|.....+
T Consensus 151 ~~~P~GVV~~I~PwN~--P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~~~~l~~~~~~~aGlP~gvv~~v~g~~~~ 227 (508)
T PLN02315 151 VWNPLGIVGVITAFNF--PCAVLGWNACIALVCGNCVVWKGAPTTPLIT-IAMTKLVAEVLEKNNLPGAIFTSFCGGAEI 227 (508)
T ss_pred EEecceEEEEECCCcc--hHHHHHHHHhHHHHcCCEEEeeCCCcChHHH-HHHHHHHHHHHHHcCCCcccEEEecCChHH
Confidence 4779999999986 44 631 111 5555666 55 33777776 899999865557
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAI 339 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~ 339 (462)
.+.|-.+..||.|.++||...-+.|.+.+ +-.||.....|++++||++|||+++|++.++.++..+-| ..|.++
T Consensus 228 ~~~l~~~~~v~~v~fTGS~~~G~~v~~~aa~~~~~~~lElgGknp~iV~~dADl~~Aa~~i~~~~f~~~G----Q~C~a~ 303 (508)
T PLN02315 228 GEAIAKDTRIPLVSFTGSSKVGLMVQQTVNARFGKCLLELSGNNAIIVMDDADIQLAVRSVLFAAVGTAG----QRCTTC 303 (508)
T ss_pred HHHHhcCCCCCEEEEECCHHHHHHHHHHHHhcCCCEEEecCCCCeEEECCCCCHHHHHHHHHHHHHHhcC----CCCCCC
Confidence 77777778899999999999988888743 237888888999999999999999999999999988544 356666
Q ss_pred HHhhhcccc
Q psy11677 340 YNLADQGEM 348 (462)
Q Consensus 340 ~~~~~~~~~ 348 (462)
..+..|..|
T Consensus 304 ~rv~V~~~i 312 (508)
T PLN02315 304 RRLLLHESI 312 (508)
T ss_pred eEEEEeHHH
Confidence 666655544
|
|
| >cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.2e-09 Score=109.03 Aligned_cols=188 Identities=13% Similarity=0.074 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---- 204 (462)
+......|++|.+.... +++.|.++.++|......|.-. +...++.++ ..+.+
T Consensus 15 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~i~~l~---~~~~~~~~~ 91 (443)
T cd07152 15 VDRAAARAAAAQRAWAATPPRERAAVLRRAADLLEEHADEIADWIVRESGSIRPKAGFEVGAAIGELH---EAAGLPTQP 91 (443)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HHHHhHHHh
Confidence 44555556655543222 8888888888887766655321 233333332 21111
Q ss_pred -----CC------CCCCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----Ce
Q psy11677 205 -----SA------QSGGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PL 251 (462)
Q Consensus 205 -----~d------~~~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~ 251 (462)
+. ...+.|+||+++|...- .|-. +.. +.+-.|....|.+.+.++ ++
T Consensus 92 ~~~~~~~~~g~~~~~~~~P~Gvv~~i~p~N-~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~~~~l~~~~~~ag~P~gv 170 (443)
T cd07152 92 QGEILPSAPGRLSLARRVPLGVVGVISPFN-FPLILAMRSVAPALALGNAVVLKPDPRTPVSGGVVIARLFEEAGLPAGV 170 (443)
T ss_pred CCccccccCCceeEEEEecceEEEEECCCC-cHHHHHHHHHHHHHHcCCEEEEECCcccchhHHHHHHHHHHHhCcCcCc
Confidence 11 12478999999994211 1321 111 223333213444777776 99
Q ss_pred EEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 252 HSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 252 v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
+|+|+ +++ +.+.|-.+..||.|...||....+.|.+.+. +-++++.| |+.++||+++||+++|++.++.++..+
T Consensus 171 v~~v~g~~~-~~~~l~~~~~v~~V~fTGs~~~g~~i~~~aa~~~~~~~lElG-Gk~~~iV~~dAdl~~aa~~i~~~~~~~ 248 (443)
T cd07152 171 LHVLPGGAD-AGEALVEDPNVAMISFTGSTAVGRKVGEAAGRHLKKVSLELG-GKNALIVLDDADLDLAASNGAWGAFLH 248 (443)
T ss_pred EEEecCChH-HHHHHhcCCCCCEEEEECCHHHHHHHHHHHHhcCCcEEEECC-CCCeEEECCCCCHHHHHHHHHHHHHhh
Confidence 99998 455 5555556677999999999999999877541 24555655 999999999999999999999888776
Q ss_pred CCCCCchhHHHHHHhhhcc
Q psy11677 328 QGLNPEDRAKAIYNLADQG 346 (462)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~ 346 (462)
-|- .|.+...+..++
T Consensus 249 ~GQ----~C~a~~rv~V~~ 263 (443)
T cd07152 249 QGQ----ICMAAGRHLVHE 263 (443)
T ss_pred cCC----CCcCCeeEEEcH
Confidence 554 444444444333
|
NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids. |
| >cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-09 Score=111.84 Aligned_cols=132 Identities=18% Similarity=0.201 Sum_probs=97.8
Q ss_pred CCCCceeeEEEEe-CCCCccc----------------c--cccccccchHHHHHhhcCCC---CeEEeecCHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWK-NETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PLHSQVSTREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyE-sr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~v~~v~~r~~~~~ll~ 266 (462)
.+.|+|||++|+. .. |-. + +.+.+-.|+ ..+.+.+.++ +++++|+....+.+.|.
T Consensus 98 ~~~P~Gvv~~I~pwN~--P~~~~~~~~~~ALaaGN~vvlKps~~~p~~~-~~l~~l~~~alP~g~~~~v~g~~~~~~~l~ 174 (434)
T cd07133 98 EYQPLGVVGIIVPWNY--PLYLALGPLIAALAAGNRVMIKPSEFTPRTS-ALLAELLAEYFDEDEVAVVTGGADVAAAFS 174 (434)
T ss_pred EEecccEEEEEcCCch--HHHHHHHHHHHHHHcCCEEEEECCCcChHHH-HHHHHHHHHhCCcCeEEEEeCChHHHHHHH
Confidence 4899999999986 33 521 1 115555666 6666555555 99999995444555554
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
.. .+|.|...||...-+.|.+.+. .+|++....|++++||++|||++.|++.++.++..+-|= .|.+...+..
T Consensus 175 ~~-~v~~V~ftGs~~~g~~v~~~aa~~~~~~~lElgGk~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~rv~V 249 (434)
T cd07133 175 SL-PFDHLLFTGSTAVGRHVMRAAAENLTPVTLELGGKSPAIIAPDADLAKAAERIAFGKLLNAGQ----TCVAPDYVLV 249 (434)
T ss_pred hC-CCCEEEEeCchHHHHHHHHHHHhcCceEEEEccCCCcEEEeCCCCHHHHHHHHHHHHhccCCC----cccCCCEEEE
Confidence 44 4999999999998888877542 479998888999999999999999999999999987654 4555555555
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|..|
T Consensus 250 ~~~i 253 (434)
T cd07133 250 PEDK 253 (434)
T ss_pred cHHH
Confidence 5444
|
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD. |
| >cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11 | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.2e-09 Score=110.27 Aligned_cols=161 Identities=19% Similarity=0.138 Sum_probs=111.2
Q ss_pred HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhcc--cccccc-cc----CC---CCCCCCceeeEEE-
Q psy11677 166 SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRK--IGTFFT-DA----SA---QSGGTPVEVLAEI- 219 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~--i~t~~a-~~----~d---~~~~~PlGVi~~I- 219 (462)
+++.|.++.+++.++...|.-. ++.+++.++ .|..+. .. .. ...+.|+||+++|
T Consensus 70 ~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~ 149 (473)
T cd07082 70 FADLLKENKEEVANLLMWEIGKTLKDALKEVDRTIDYIRDTIEELKRLDGDSLPGDWFPGTKGKIAQVRREPLGVVLAIG 149 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCceeEEEEecceEEEEEC
Confidence 7888888888888877766322 333333333 011110 00 00 1248999999999
Q ss_pred -EeCCCCcccccc-----------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEEee
Q psy11677 220 -WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLIIP 276 (462)
Q Consensus 220 -yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDliIP 276 (462)
|... ...... +.+..+. ..+++.|.++ +++++++. .+.+.+.|-.+..+|.|..
T Consensus 150 p~N~P--~~~~~~~i~~AL~aGN~vilKps~~~~~~~-~~l~~~l~~aglp~~~~~vv~g~~~~~~~~l~~~~~v~~V~f 226 (473)
T cd07082 150 PFNYP--LNLTVSKLIPALIMGNTVVFKPATQGVLLG-IPLAEAFHDAGFPKGVVNVVTGRGREIGDPLVTHGRIDVISF 226 (473)
T ss_pred CcCcH--HHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHcCCCccceEEEecCcHHHHHHHhcCCCCCEEEE
Confidence 4332 221111 5556666 6666777775 99999984 4446676666778999999
Q ss_pred cCChhHHHHHHhhCCCcce-eeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 277 RGSSDLVRSIQQKSQHIPV-LGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 277 rG~~~lv~~v~~~s~~iPv-i~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
.||....+.|.+.+...|+ +++| |...++|+++||+++|++.+++++..+.|-
T Consensus 227 tGs~~~g~~i~~~a~~~~~~lelg-g~n~~iV~~dadl~~aa~~i~~~~~~~~GQ 280 (473)
T cd07082 227 TGSTEVGNRLKKQHPMKRLVLELG-GKDPAIVLPDADLELAAKEIVKGALSYSGQ 280 (473)
T ss_pred ECcHHHHHHHHHHhCCCcEEEEcC-CCCeEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999988633776 6776 555678999999999999999999987774
|
NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants. |
| >PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-08 Score=109.10 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=95.9
Q ss_pred CCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|-..- .|-. +.. ..+-.|+ ..+.+.+.++ +++++|. .++....|+.
T Consensus 121 ~~P~GvV~~I~PwN-~Pl~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~l~~~aGlP~gvv~~v~~g~~~~~~l~~ 198 (457)
T PRK09406 121 YQPLGVVLAVMPWN-FPLWQVVRFAAPALMAGNVGLLKHASNVPQTA-LYLADLFRRAGFPDGCFQTLLVGSGAVEAILR 198 (457)
T ss_pred EecceeEEEECCcc-chHHHHHHHHHHHHHcCCEEEEECCCcCcHHH-HHHHHHHHHhCCCcCcEEEEcCCchhHHHHhc
Confidence 78999999993211 2421 111 4455666 6666877776 8999986 5667777775
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--C-cceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--H-IPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~-iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
. ..||.|...||...-+.|.+.+. . -+++++| |++++||++|||+++|++.++.++..+.|- .|.++..+.
T Consensus 199 ~-~~i~~V~fTGs~~~G~~i~~~a~~~~~~~~lElG-G~~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~rv~ 272 (457)
T PRK09406 199 D-PRVAAATLTGSEPAGRAVAAIAGDEIKKTVLELG-GSDPFIVMPSADLDRAAETAVTARVQNNGQ----SCIAAKRFI 272 (457)
T ss_pred C-CCcCEEEEECcHHHHHHHHHHHHhcCCceeeecC-CCCeeEECCCCCHHHHHHHHHHHHhhCCCC----cccCCeEEE
Confidence 4 44999999999998888876442 1 3568888 999999999999999999999999998774 355544444
Q ss_pred hcccc
Q psy11677 344 DQGEM 348 (462)
Q Consensus 344 ~~~~~ 348 (462)
.|+.+
T Consensus 273 V~~~i 277 (457)
T PRK09406 273 VHADV 277 (457)
T ss_pred EcHHH
Confidence 44443
|
|
| >cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.6e-09 Score=111.12 Aligned_cols=133 Identities=20% Similarity=0.196 Sum_probs=99.3
Q ss_pred CCCCceeeEEEEeCCCCcccc----------------c--ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----------------P--KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----------------~--~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|...- .|-.+ . .+.+-.|+ ..+.+.+.++ +++|+|+ +.+.+.+.|
T Consensus 132 ~~~P~GVv~~I~P~N-~Pl~~~~~~i~~ALaaGN~VIlKps~~~p~~~-~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~l 209 (473)
T cd07097 132 TREPLGVVGLITPWN-FPIAIPAWKIAPALAYGNTVVFKPAELTPASA-WALVEILEEAGLPAGVFNLVMGSGSEVGQAL 209 (473)
T ss_pred EEEeeeeEEEEcccC-hHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHH-HHHHHHHHHcCCCCcceEEeccCchHHHHHH
Confidence 379999999998522 25321 1 15666777 7777777776 9999999 445566666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--Ccce-eeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPV-LGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPv-i~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
-.+..||.|...||...-+.|.+.+. ..|| ++.| |++++||++|||+++|++-++.++..+.|- .|.+...+
T Consensus 210 ~~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~~~lElG-Gk~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~rv 284 (473)
T cd07097 210 VEHPDVDAVSFTGSTAVGRRIAAAAAARGARVQLEMG-GKNPLVVLDDADLDLAVECAVQGAFFSTGQ----RCTASSRL 284 (473)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHhccCCcEEEECC-CCCeeEECCCCCHHHHHHHHHHHHHhccCC----CCcCCeeE
Confidence 66678999999999999988877641 3465 5555 999999999999999999999999998774 35554444
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..++.|
T Consensus 285 ~V~~~i 290 (473)
T cd07097 285 IVTEGI 290 (473)
T ss_pred EEehhH
Confidence 444443
|
Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group. |
| >cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-08 Score=107.82 Aligned_cols=115 Identities=18% Similarity=0.085 Sum_probs=87.4
Q ss_pred CCCCceeeEEEEeCCCCccccc------------------ccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-.+. ...+-.|. ..+++.+.+. +++|+|. +.+.+.+.|-
T Consensus 113 ~~~P~GVv~~I~p~N-~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~~~~~~lP~gvv~~v~g~~~~~~~~l~ 190 (456)
T cd07107 113 LREPYGVVARIVAFN-HPLMFAAAKIAAPLAAGNTVVVKPPEQAPLSA-LRLAELAREVLPPGVFNILPGDGATAGAALV 190 (456)
T ss_pred EEecceEEEEECCcc-cHHHHHHHHHhHHHHcCCEEEEeCCCCChHHH-HHHHHHHHHhCCcCcEEEEeCCCchHHHHHh
Confidence 478999999996542 264321 15555666 6666555554 9999998 4554555555
Q ss_pred CCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
.+..||.|...||...-+.|.+.+ +..||+....|++++||++|||++.|++-++.++.
T Consensus 191 ~~~~i~~v~fTGs~~~g~~i~~~aa~~~~~~~lElgG~~p~iV~~dadl~~Aa~~i~~~~~ 251 (456)
T cd07107 191 RHPDVKRIALIGSVPTGRAIMRAAAEGIKHVTLELGGKNALIVFPDADPEAAADAAVAGMN 251 (456)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHHhcCCCeEEEECCCCCeEEECCCCCHHHHHHHHHHhch
Confidence 677799999999998877777654 24899888889999999999999999999999973
|
Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD. |
| >PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.4e-09 Score=109.96 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=94.0
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---CeEEeecC-HHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PLHSQVST-REEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~v~~v~~-r~~~~~ll~ 266 (462)
.+.|+||+++|-..- .|-. + +.+.+-.|+ ..+++.+.++ +.+|+|+. ...+.+.|-
T Consensus 135 ~r~P~GVv~~I~p~N-~P~~~~~~~i~~ALaaGN~VIlKps~~~p~~~-~~l~~~~~~alP~gv~~~v~g~~~~~~~~l~ 212 (475)
T PRK13473 135 RRDPVGVVASIAPWN-YPLMMAAWKLAPALAAGNTVVLKPSEITPLTA-LKLAELAADILPPGVLNVVTGRGATVGDALV 212 (475)
T ss_pred EEecceeEEEEccCC-hHHHHHHHHHHHHHhcCCEEEEECCCCChHHH-HHHHHHHHHhCCcCcEEEEecCchHHHHHHh
Confidence 489999999993111 1321 1 115566666 6666555444 99999984 445555555
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
.+..||+|..+||...-+.|.+.+. .+|+..-..|++++||++|||+++|++.++.++..+-|- .|.+...+..
T Consensus 213 ~~~~vd~V~fTGs~~~g~~i~~~aa~~~~~~~lElgG~~p~iV~~dADld~Aa~~i~~~~f~n~GQ----~C~a~~rv~V 288 (475)
T PRK13473 213 GHPKVRMVSLTGSIATGKHVLSAAADSVKRTHLELGGKAPVIVFDDADLDAVVEGIRTFGYYNAGQ----DCTAACRIYA 288 (475)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHHhhcCCcEEEECCCCCeeEECCCCCHHHHHHHHHHHHHhcCCC----CCCCCeEEEE
Confidence 5667999999999998888776552 368877777999999999999999999998887776554 4444444444
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|..|
T Consensus 289 ~~~i 292 (475)
T PRK13473 289 QRGI 292 (475)
T ss_pred cHHH
Confidence 4443
|
|
| >cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-08 Score=108.01 Aligned_cols=132 Identities=22% Similarity=0.227 Sum_probs=99.1
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-. + +.+.+-.++ ..+.+.+.+. +++++|+ +.+....|+.
T Consensus 97 ~~~P~Gvv~~i~p~n-~P~~~~~~~~~~aL~aGN~vvlKps~~~p~~~-~~l~~~~~~~~P~gv~~vv~g~~~~~~~l~~ 174 (426)
T cd07087 97 IPEPLGVVLIIGPWN-YPLQLALAPLIGAIAAGNTVVLKPSELAPATS-ALLAKLIPKYFDPEAVAVVEGGVEVATALLA 174 (426)
T ss_pred EEecCcEEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCccCHHHH-HHHHHHHHHhCCCCEEEEEeCCchHHHHHHh
Confidence 489999999995322 2321 1 115566677 7777666553 8999998 5666777877
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
.. +|.|+..||....+.|.+.+. .+|++....|++++||++|||+++|++-++.++..+-|- .|.+...+..
T Consensus 175 ~~--v~~V~ftGs~~~g~~i~~~a~~~~~~~~lelgG~~~~iV~~dadl~~aa~~i~~~~~~~~GQ----~C~a~~rv~V 248 (426)
T cd07087 175 EP--FDHIFFTGSPAVGKIVMEAAAKHLTPVTLELGGKSPCIVDKDANLEVAARRIAWGKFLNAGQ----TCIAPDYVLV 248 (426)
T ss_pred CC--CCEEEEeCChHHHHHHHHHHHhhCCceEEeccCCCceEecCCCCHHHHHHHHHHHHHhccCC----ccccCCEEEE
Confidence 64 999999999999888876552 478888888999999999999999999999999987654 4555555555
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|..+
T Consensus 249 ~~~i 252 (426)
T cd07087 249 HESI 252 (426)
T ss_pred cHHH
Confidence 5444
|
ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate. |
| >cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-08 Score=105.45 Aligned_cols=120 Identities=23% Similarity=0.218 Sum_probs=91.1
Q ss_pred CCCCceeeEEEEeCCCCcc----------------cccc--cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNT----------------TVPK--KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pn----------------v~~~--~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+|||++|...- .|- |+.. ..+-.|. ..+.+.+.++ +.+++|+. .+.+.+.|
T Consensus 120 ~~~P~GVv~~I~p~N-~P~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~~~~~ag~p~g~~~~v~g~~~~~~~~l 197 (456)
T cd07145 120 VREPIGVVGAITPFN-FPANLFAHKIAPAIAVGNSVVVKPSSNTPLTA-IELAKILEEAGLPPGVINVVTGYGSEVGDEI 197 (456)
T ss_pred EEecceeEEEECCCC-hHHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHcCCCcccEEEEeCCCchHHHHH
Confidence 368999999993221 142 1111 5556676 7777888776 89999983 44455555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..+|.|...||...-+.|.+.+. .+||+....|++++||++|||+++|++.++.++..+.|-
T Consensus 198 ~~~~~v~~V~fTGs~~~g~~i~~~aa~~~~~v~lElgG~n~~iV~~dAdl~~aa~~i~~~~f~~~GQ 264 (456)
T cd07145 198 VTNPKVNMISFTGSTAVGLLIASKAGGTGKKVALELGGSDPMIVLKDADLERAVSIAVRGRFENAGQ 264 (456)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHHhhcCCceEEecCCCCeeEECCCCCHHHHHHHHHHHHHhccCC
Confidence 45567999999999997776666542 589999999999999999999999999999999987764
|
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD. |
| >cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-08 Score=107.30 Aligned_cols=134 Identities=19% Similarity=0.200 Sum_probs=102.1
Q ss_pred CCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-.+ +...+-.|. ..+++.+.++ +++|+|+ +.+.+.+.|
T Consensus 163 ~~~P~GVv~~I~pwN-~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L 240 (512)
T cd07124 163 VYRPLGVGAVISPWN-FPLAILAGMTTAALVTGNTVVLKPAEDTPVIA-AKLVEILEEAGLPPGVVNFLPGPGEEVGDYL 240 (512)
T ss_pred EEecceEEEEECCCC-hHHHHHHHHHHHHHHcCCEEEEECCccccHHH-HHHHHHHHHhCcCCCceEEeccCchHHHHHH
Confidence 378999999994222 24321 115555666 6666877776 8999998 455677777
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--------CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--------HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--------~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~ 337 (462)
-.+..+|.|...||...-+.|.+.+. ..||+....|++++||++|||+++|++.++.++..+.|- .|.
T Consensus 241 ~~~~~v~~V~fTGs~~~g~~i~~~aa~~~~~~~~l~~~~lElgGk~p~iV~~daDl~~Aa~~i~~~~f~~~GQ----~C~ 316 (512)
T cd07124 241 VEHPDVRFIAFTGSREVGLRIYERAAKVQPGQKWLKRVIAEMGGKNAIIVDEDADLDEAAEGIVRSAFGFQGQ----KCS 316 (512)
T ss_pred hcCCCCCEEEEeCchHHHHHHHHHHhcccccccCCCcEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhhCCC----ccc
Confidence 77778999999999999998887642 369999999999999999999999999999999997775 455
Q ss_pred HHHHhhhcccc
Q psy11677 338 AIYNLADQGEM 348 (462)
Q Consensus 338 ~~~~~~~~~~~ 348 (462)
+...+..|+.|
T Consensus 317 a~~rv~V~~~i 327 (512)
T cd07124 317 ACSRVIVHESV 327 (512)
T ss_pred cceEEEEcHHH
Confidence 55555555444
|
Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. |
| >cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.5e-08 Score=106.40 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=99.3
Q ss_pred CCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|-..- .|-. + +...+-.|+ ..+++.+.++ +++|+|+ +...+.+.|-
T Consensus 152 ~~P~GVv~~I~P~N-~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~eaGlP~gvv~~v~g~~~~~~~~L~ 229 (500)
T cd07083 152 YVGLGAGVVISPWN-FPVAIFTGMIVAPVAVGNTVIAKPAEDAVVVG-YKVFEIFHEAGFPPGVVQFLPGVGEEVGAYLT 229 (500)
T ss_pred EeccceEEEEcCCc-cHHHHHHHHHHHHHHcCCeEEEeCCCcchHHH-HHHHHHHHHcCCCCCceEEEeCCCchhHHHHh
Confidence 78999999994211 2511 1 115556676 6777777776 9999998 3455666666
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--------CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHH
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--------HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKA 338 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--------~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~ 338 (462)
.+..||.|...||...-+.|.+.+. ..||+....|++++||+++||++.|++.++.++..+-|- .|.+
T Consensus 230 ~~~~v~~v~ftGs~~~g~~v~~~aa~~~~~~~~~~~v~lElgG~~~~iV~~dadl~~aa~~i~~~~f~~~GQ----~C~a 305 (500)
T cd07083 230 EHERIRGINFTGSLETGKKIYEAAARLAPGQTWFKRLYVETGGKNAIIVDETADFELVVEGVVVSAFGFQGQ----KCSA 305 (500)
T ss_pred cCCCcCEEEEECcHHHHHHHHHHHhhccccccccCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhhcCC----CCCC
Confidence 6788999999999999988877642 279999999999999999999999999999999875544 4555
Q ss_pred HHHhhhcccc
Q psy11677 339 IYNLADQGEM 348 (462)
Q Consensus 339 ~~~~~~~~~~ 348 (462)
...+..++.|
T Consensus 306 ~~rv~V~~~i 315 (500)
T cd07083 306 ASRLILTQGA 315 (500)
T ss_pred CeeEEEcHHH
Confidence 4444444443
|
ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH. |
| >cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.2e-09 Score=109.83 Aligned_cols=132 Identities=19% Similarity=0.149 Sum_probs=96.1
Q ss_pred CCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|+..- .|-.+ +.+.+-.++ ..+.+.+.++ +++|+|+. ++ +.+.|
T Consensus 134 ~~~P~Gvv~~I~p~N-~P~~~~~~~i~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aglP~gv~~~v~g~~~-~~~~l 210 (471)
T cd07139 134 RREPVGVVAAIVPWN-APLFLAALKIAPALAAGCTVVLKPSPETPLDA-YLLAEAAEEAGLPPGVVNVVPADRE-VGEYL 210 (471)
T ss_pred EEEeccEEEEEcCCc-hHHHHHHHHHHHHHhcCCEEEEECCCcCCHHH-HHHHHHHHHcCCCCCcEEEEeCCHH-HHHHH
Confidence 489999999998322 23211 115666777 7777888877 89999984 55 55555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--Ccc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
-.+..||.|...||....+.|.+.+. ..| +++.| |+..++|+++||++.|++-++.++..+-|- .|.+...+
T Consensus 211 ~~~~~i~~v~ftGs~~~g~~v~~~~~~~~~~~~lElG-G~np~iV~~dADl~~aa~~i~~~~~~~~GQ----~C~a~~~v 285 (471)
T cd07139 211 VRHPGVDKVSFTGSTAAGRRIAAVCGERLARVTLELG-GKSAAIVLDDADLDAAVPGLVPASLMNNGQ----VCVALTRI 285 (471)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHHhcCCEEEEEcC-CCCeeEECCCCCHHHHHHHHHHHHHhcCCC----CCcCCcEE
Confidence 55778999999999999888766442 245 55555 999999999999999999999999986554 45555555
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..++.|
T Consensus 286 ~V~~~i 291 (471)
T cd07139 286 LVPRSR 291 (471)
T ss_pred EEeHhH
Confidence 555443
|
The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD. |
| >cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.2e-09 Score=109.69 Aligned_cols=132 Identities=18% Similarity=0.117 Sum_probs=96.8
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCC-C----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPR-Y----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~-~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++|+... .|-. + +...+-.|+ ..+++.+.+ + +++++|+ +...+.+.
T Consensus 114 ~~~P~Gvv~~I~P~N-~P~~~~~~~~~~AL~aGN~vvlKps~~~~~~~-~~l~~~~~~aag~P~g~~~~v~g~~~~~~~~ 191 (455)
T cd07120 114 LREPMGVAGIIVPWN-SPVVLLVRSLAPALAAGCTVVVKPAGQTAQIN-AAIIRILAEIPSLPAGVVNLFTESGSEGAAH 191 (455)
T ss_pred EEecceeEEEECCCc-hHHHHHHHHHHHHHHcCCEEEeECCCCChHHH-HHHHHHHHHhcCCCccceEEEecCchhHHHH
Confidence 488999999997544 3421 1 115556666 777777776 4 9999999 35556666
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--Ccc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
|-.+..||.|...||....+.|.+.+. ..| +++.| |+..++|+++||+++|++.++.++..+.|- .|.++..
T Consensus 192 l~~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~~~lElG-G~~~~IV~~daDl~~aa~~i~~~~~~~~GQ----~C~a~~r 266 (455)
T cd07120 192 LVASPDVDVISFTGSTATGRAIMAAAAPTLKRLGLELG-GKTPCIVFDDADLDAALPKLERALTIFAGQ----FCMAGSR 266 (455)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHHHHhcCCeEEEECC-CCCeeEECCCCCHHHHHHHHHHHHHHhCCC----CCCCCeE
Confidence 666778999999999999999877642 134 45555 899999999999999999999999998775 3444444
Q ss_pred hhhccc
Q psy11677 342 LADQGE 347 (462)
Q Consensus 342 ~~~~~~ 347 (462)
+..|+.
T Consensus 267 v~V~~~ 272 (455)
T cd07120 267 VLVQRS 272 (455)
T ss_pred EEEcHH
Confidence 444443
|
Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural. |
| >TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-08 Score=107.19 Aligned_cols=132 Identities=23% Similarity=0.304 Sum_probs=97.2
Q ss_pred CCCCc-eeeEEEEeCCCCcc----------------cc-c-ccccccchHHHHHhhcCCC----CeEEeec--CHHHHHH
Q psy11677 209 GGTPV-EVLAEIWKNETLNT----------------TV-P-KKHAKTSQCKYFTKMLPRY----PLHSQVS--TREEISD 263 (462)
Q Consensus 209 ~~~Pl-GVi~~IyEsr~~Pn----------------v~-~-~~ea~~sn~~~l~~al~~~----~~v~~v~--~r~~~~~ 263 (462)
.+.|+ ||+++|-..- .|- |+ + ...+-.|. ..+++.+.++ +++|+|+ .++....
T Consensus 135 ~~~P~~Gvv~~I~P~N-~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~ 212 (472)
T TIGR03250 135 QREPLLGVISAITPFN-HPMNQVAHKIAPAIATNNRMVVKPSEKTPLSA-LYLADILYEAGLPPQMLQVVTGDPREIADE 212 (472)
T ss_pred EEcCCCCEEEEEcCCc-HHHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHcCCCcccEEEEecCchHHHHH
Confidence 48898 9999993211 132 11 1 15556666 6666777776 9999998 3665666
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhCC-CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKSQ-HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s~-~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
|++ +..||.|...||...-+.|.+.+. +-+++++| |++++||++|||+++|++.++.++..+.|- .|.+...+
T Consensus 213 l~~-~~~v~~v~fTGs~~~g~~i~~~a~~~~~~lElG-Gk~p~iV~~dAdl~~aa~~i~~~~f~~~GQ----~C~a~~rv 286 (472)
T TIGR03250 213 LIT-NPHVDLVTFTGGVAIGKYIAARAGYRRQVLELG-GNDPLIVMEDADLDRAADLAVKGSYKNSGQ----RCTAVKRM 286 (472)
T ss_pred Hhc-CCCCCEEEEECcHHHHHHHHHHhcCCceEEecC-CCCeEEECCCCCHHHHHHHHHHHHHHhhCC----CCCCCcEE
Confidence 776 667999999999999999988763 14678888 999999999999999999999999887774 34444444
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..+..|
T Consensus 287 ~V~~~i 292 (472)
T TIGR03250 287 LVQESV 292 (472)
T ss_pred EEeHhH
Confidence 444443
|
It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme. |
| >PRK10090 aldehyde dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-08 Score=106.91 Aligned_cols=135 Identities=16% Similarity=0.098 Sum_probs=101.2
Q ss_pred CCCCceeeEEEEeCCCCccc----------------cc--ccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VP--KKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~--~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-. +. ...+-+|+ ..+.+.+.++ +++|+|+. ...+.+.|
T Consensus 68 ~~~P~Gvv~~i~p~N-~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aglP~gv~~~v~g~~~~~~~~l 145 (409)
T PRK10090 68 FKRALGVTTGILPWN-FPFFLIARKMAPALLTGNTIVIKPSEFTPNNA-IAFAKIVDEIGLPKGVFNLVLGRGETVGQEL 145 (409)
T ss_pred EEecccEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCcChHHH-HHHHHHHHHcCCCcccEEEEeCCChhHHHHH
Confidence 379999999994221 1321 11 15566777 7777777776 89999994 56677777
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..+|+|.++||...-+.|.+.+. ..||+....|++++||++|||+++|++.++.++..+-| ..|.+...+.
T Consensus 146 ~~~~~v~~V~ftGs~~~g~~v~~~aa~~~~~~~lElgGk~p~iV~~dADld~aa~~iv~~~f~~~G----Q~C~a~~rv~ 221 (409)
T PRK10090 146 AGNPKVAMVSMTGSVSAGEKIMAAAAKNITKVCLELGGKAPAIVMDDADLDLAVKAIVDSRVINSG----QVCNCAERVY 221 (409)
T ss_pred hcCCCcCEEEEECCHHHHHHHHHHHHhcCCeEEEECCCCCeEEEcCCCCHHHHHHHHHHHHHHhcC----CCCCCCeEEE
Confidence 78888999999999999999876542 24665555599999999999999999999999998544 4666666666
Q ss_pred hccccc
Q psy11677 344 DQGEMD 349 (462)
Q Consensus 344 ~~~~~~ 349 (462)
.++.|.
T Consensus 222 V~~~i~ 227 (409)
T PRK10090 222 VQKGIY 227 (409)
T ss_pred EcHHHH
Confidence 666553
|
|
| >PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-08 Score=108.59 Aligned_cols=134 Identities=16% Similarity=0.097 Sum_probs=97.6
Q ss_pred CCCCceeeEEEEeCCCCccccc------------------ccccccchHHHHHhhcCCC----CeEEeec--CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVP------------------KKHAKTSQCKYFTKMLPRY----PLHSQVS--TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~------------------~~ea~~sn~~~l~~al~~~----~~v~~v~--~r~~~~~l 264 (462)
.+.|+||+++|...- .|-.+. .+.+-.|+ ..+++.+.++ +++|+|+ +++....|
T Consensus 154 ~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VvlKps~~~p~~~-~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~L 231 (494)
T PRK09847 154 VREPVGVIAAIVPWN-FPLLLTCWKLGPALAAGNSVILKPSEKSPLSA-IRLAGLAKEAGLPDGVLNVVTGFGHEAGQAL 231 (494)
T ss_pred EecceeEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEeCCCCChHHH-HHHHHHHHHcCcCcCcEEEEeCCChhHHHHH
Confidence 589999999997653 264311 15566676 6777887776 8999998 35555555
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC---Ccce-eeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPV-LGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIY 340 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~---~iPv-i~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~ 340 (462)
+ .+..+|.|.++||....+.|.+.+. ..|| ++.|..+++++++..||+++|++.++.++..+ .-..|.+..
T Consensus 232 ~-~~~~vd~v~fTGs~~~g~~v~~~aa~~~~~~~~lElGGk~~~iV~~daaDl~~Aa~~i~~~~~~~----aGQ~C~a~~ 306 (494)
T PRK09847 232 S-RHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYN----QGQVCIAGT 306 (494)
T ss_pred h-cCCCCCEEEEECCHHHHHHHHHHhhhhCCCeEEEecCCCCeeEEcCCccCHHHHHHHHHHHHHhc----CCCCCCCCc
Confidence 5 4778999999999998888777431 2455 66777777777765579999999999999885 444677777
Q ss_pred Hhhhccccc
Q psy11677 341 NLADQGEMD 349 (462)
Q Consensus 341 ~~~~~~~~~ 349 (462)
.+..|..|.
T Consensus 307 rv~V~~~i~ 315 (494)
T PRK09847 307 RLLLEESIA 315 (494)
T ss_pred EEEEcHHHH
Confidence 777666653
|
|
| >PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.2e-08 Score=103.70 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=95.1
Q ss_pred CCCCceeeEEEEeCCCCcc----------------cc--cccccccchHHHHHhhcCCC----CeEEeecCHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNT----------------TV--PKKHAKTSQCKYFTKMLPRY----PLHSQVSTREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pn----------------v~--~~~ea~~sn~~~l~~al~~~----~~v~~v~~r~~~~~ll~ 266 (462)
.+.|+||+++|-..- .|- |+ +..++-.|+ ..+++.+.++ +++++|+....+.+.|-
T Consensus 131 ~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VvlKPs~~tp~t~-~~l~~l~~~aGlP~gvv~~v~g~~~~~~~L~ 208 (487)
T PRK09457 131 RHRPHGVVAVFGPYN-FPGHLPNGHIVPALLAGNTVVFKPSELTPWVA-ELTVKLWQQAGLPAGVLNLVQGGRETGKALA 208 (487)
T ss_pred EEeccEEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHhCcCcCeEEEEeCCHHHHHHHh
Confidence 478999999992111 131 11 116666777 6677777776 89999994334566666
Q ss_pred CCCCccEEeecCChhHHHHHHhh-C--CCcc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQK-S--QHIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~-s--~~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
.+..||.|...||..--+.|.+. + ...| +++.| |++++||++|||+++|++.++.++..+-|- .|.+...+
T Consensus 209 ~~~~v~~V~fTGS~~~G~~i~~~aa~~~~~~~~lElG-Gk~p~IV~~dADl~~aa~~i~~~~f~~~GQ----~C~a~~rv 283 (487)
T PRK09457 209 AHPDIDGLLFTGSANTGYLLHRQFAGQPEKILALEMG-GNNPLVIDEVADIDAAVHLIIQSAFISAGQ----RCTCARRL 283 (487)
T ss_pred cCCCcCEEEEECCHHHHHHHHHHHhhcCCCcEEEecC-CCCeEEECCCCCHHHHHHHHHHHHhhccCC----CCCCCceE
Confidence 67789999999999966665553 1 1244 67777 999999999999999999999999885444 56666666
Q ss_pred hhcccc
Q psy11677 343 ADQGEM 348 (462)
Q Consensus 343 ~~~~~~ 348 (462)
..|+.|
T Consensus 284 ~V~~~i 289 (487)
T PRK09457 284 LVPQGA 289 (487)
T ss_pred EEeccc
Confidence 655554
|
|
| >cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.3e-08 Score=104.61 Aligned_cols=133 Identities=22% Similarity=0.175 Sum_probs=101.2
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~ 266 (462)
.+.|+||+++|-..- .|-. +.. +++..|+ ..+++.+.++ +++++|+ +++....|++
T Consensus 97 ~~~P~Gvv~~i~p~N-~P~~~~~~~~~~ALaaGN~vi~Kps~~tp~~~-~~l~~~~~~alP~gv~~~v~g~~~~~~~L~~ 174 (449)
T cd07136 97 YYEPYGVVLIIAPWN-YPFQLALAPLIGAIAAGNTAVLKPSELTPNTS-KVIAKIIEETFDEEYVAVVEGGVEENQELLD 174 (449)
T ss_pred EEecCeEEEEECCCc-hHHHHHHHHHHHHHhcCCEEEEECcccchHHH-HHHHHHHHHhCCCCEEEEEeCChHHHHHHhc
Confidence 478999999996311 1421 111 5566677 6777555554 9999999 6788888885
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
. . ||.|.++||...-+.|.+++. .+||.....|++++||++|||++.|++.+..++..+-| ..|.+...+..
T Consensus 175 ~-~-v~~V~fTGS~~~g~~i~~~aa~~~~~v~lElgGknp~iV~~dADld~aa~~i~~~~~~~~G----Q~C~a~~rv~V 248 (449)
T cd07136 175 Q-K-FDYIFFTGSVRVGKIVMEAAAKHLTPVTLELGGKSPCIVDEDANLKLAAKRIVWGKFLNAG----QTCVAPDYVLV 248 (449)
T ss_pred C-C-CCEEEEECCHHHHHHHHHHHHhcCCCEEEEecCCCeEEECCCCCHHHHHHHHHHHHHcccC----CcccCCCEEEE
Confidence 4 4 999999999999998887652 48999999999999999999999999999999887544 35666666666
Q ss_pred ccccc
Q psy11677 345 QGEMD 349 (462)
Q Consensus 345 ~~~~~ 349 (462)
|..|.
T Consensus 249 ~~~i~ 253 (449)
T cd07136 249 HESVK 253 (449)
T ss_pred cHHHH
Confidence 65543
|
Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD. |
| >PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.7e-08 Score=104.16 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=100.6
Q ss_pred CCCCceeeEEEEeCCCCcccc----------------cc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----------------PK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----------------~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-.+ .. ..+-.+. ..|++.+.++ +.+|+|+ +.+.+.+.|
T Consensus 168 ~~~P~GVv~~I~PwN-~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~a-~~l~~~l~~aGlP~gvv~vv~g~~~~~~~~L 245 (514)
T PRK03137 168 FYIPLGVGVVISPWN-FPFAIMAGMTLAAIVAGNTVLLKPASDTPVIA-AKFVEVLEEAGLPAGVVNFVPGSGSEVGDYL 245 (514)
T ss_pred EEecCcEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHhCCCCCcEEEeecCchHHHHHH
Confidence 478999999994211 24221 11 4444555 5556777776 9999998 344566666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--------CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--------HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--------~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~ 337 (462)
-.+..||.|...||...-+.|.+.+. -.||+....|++++||++|||+++|++.++.+++.+.|- .|.
T Consensus 246 ~~~~~v~~V~fTGs~~~G~~i~~~aa~~~~~~~~l~~v~lElgGk~~~iV~~daDl~~Aa~~i~~~~~~~~GQ----~C~ 321 (514)
T PRK03137 246 VDHPKTRFITFTGSREVGLRIYERAAKVQPGQIWLKRVIAEMGGKDAIVVDEDADLDLAAESIVASAFGFSGQ----KCS 321 (514)
T ss_pred hcCCCcCEEEEECCcHHHHHHHHHHhcccccccccceEEecCCCCCeEEECCCCCHHHHHHHHHHHHHhCCCC----CCc
Confidence 67777999999999999999988763 269999999999999999999999999999999998775 355
Q ss_pred HHHHhhhcccc
Q psy11677 338 AIYNLADQGEM 348 (462)
Q Consensus 338 ~~~~~~~~~~~ 348 (462)
++..+..++.|
T Consensus 322 a~~rv~V~~~v 332 (514)
T PRK03137 322 ACSRAIVHEDV 332 (514)
T ss_pred cCeEEEEeHHH
Confidence 55555555444
|
|
| >PLN02278 succinic semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.6e-08 Score=103.45 Aligned_cols=134 Identities=19% Similarity=0.096 Sum_probs=98.1
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
++.|+||+++|-..- .|-. +.. ..+-.|+ ..|.+.|.++ +++|+|+ +.+.+.+.|
T Consensus 157 ~~~P~GvV~~I~PwN-~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~-~~l~~~l~eaglP~gvv~~v~g~~~~~~~~L 234 (498)
T PLN02278 157 LKQPVGVVGAITPWN-FPLAMITRKVGPALAAGCTVVVKPSELTPLTA-LAAAELALQAGIPPGVLNVVMGDAPEIGDAL 234 (498)
T ss_pred EeecccEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHcCCCcccEEEEecCChhhHHHH
Confidence 378999999994222 2421 111 4555566 6666777776 9999998 455566666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..||.|...||...-+.|.+.+. ..||..-..|++++||++|||+++|++-++.++..+.|- .|.++..+.
T Consensus 235 ~~~~~v~~V~fTGS~~~G~~i~~~aa~~~~~~~lElGGk~~~iV~~dAdl~~aa~~i~~~~f~~~GQ----~C~a~~rv~ 310 (498)
T PLN02278 235 LASPKVRKITFTGSTAVGKKLMAGAAATVKRVSLELGGNAPFIVFDDADLDVAVKGALASKFRNSGQ----TCVCANRIL 310 (498)
T ss_pred hcCCCcCEEEEECcHHHHHHHHHHHhhcCCcEEEecCCCCeeEECCCCCHHHHHHHHHHHHhccCCC----CCcCCcEEE
Confidence 56677999999999999999877652 245555556999999999999999999999999997765 555555555
Q ss_pred hcccc
Q psy11677 344 DQGEM 348 (462)
Q Consensus 344 ~~~~~ 348 (462)
.|+.|
T Consensus 311 V~~~i 315 (498)
T PLN02278 311 VQEGI 315 (498)
T ss_pred EeHHH
Confidence 55554
|
|
| >PLN02203 aldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.7e-08 Score=103.56 Aligned_cols=177 Identities=16% Similarity=0.137 Sum_probs=121.3
Q ss_pred HHHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccccccc-----cC----C---CCCCCCceee
Q psy11677 165 NSATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTD-----AS----A---QSGGTPVEVL 216 (462)
Q Consensus 165 ~iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~-----~~----d---~~~~~PlGVi 216 (462)
.+++.|+++.++|..+...|+-+ ++..++.++ .+.. .+ . ..++.|+||+
T Consensus 36 ~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~reP~GVv 112 (484)
T PLN02203 36 GLLRLLKDNEEAIFKALHQDLGKHRVEAYRDEVGVLTKSANLALSNLK---KWMAPKKAKLPLVAFPATAEVVPEPLGVV 112 (484)
T ss_pred HHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHhccccccCCcccCCceeEEEEecccEE
Confidence 38888888888888877766543 223333232 2211 11 0 1347899999
Q ss_pred EEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC---CeEEeecCHHHHHHHhcCCCCccEEe
Q psy11677 217 AEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY---PLHSQVSTREEISDLLSMEKHIDLII 275 (462)
Q Consensus 217 ~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~---~~v~~v~~r~~~~~ll~~~~~iDliI 275 (462)
++|-.-- .|-. +.. +.+-+|+ ..+.+.+.+. +++++|....++.+.|-.+. ||.|.
T Consensus 113 ~~I~pwN-~P~~~~~~~i~~ALaaGN~VVlKps~~tp~~~-~~l~~~~~~~lP~gvv~vv~g~~~~~~~l~~~~-vd~v~ 189 (484)
T PLN02203 113 LIFSSWN-FPIGLSLEPLIGAIAAGNAVVLKPSELAPATS-AFLAANIPKYLDSKAVKVIEGGPAVGEQLLQHK-WDKIF 189 (484)
T ss_pred EEEcCCc-chHHHHHHHHHHHHHcCCEEEEECCCcChHHH-HHHHHHHHHhCCcCEEEEEeCCHHHHHHHHhCC-CCEEE
Confidence 9995311 2421 111 5566676 6666666554 99999985444555554454 99999
Q ss_pred ecCChhHHHHHHhhCC--CcceeeeccceeEEEEcc---CCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccc
Q psy11677 276 PRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDK---DADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDV 350 (462)
Q Consensus 276 PrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~---~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (462)
.+||...-+.|.+.+. .+||+....|++++||++ +||+++|++.++.++... |....|.++..+..|..|..
T Consensus 190 fTGS~~~G~~v~~~aa~~l~~v~lElGGknp~iV~~d~~daDl~~aa~~i~~~~f~~---~aGQ~C~a~~rv~V~~~i~d 266 (484)
T PLN02203 190 FTGSPRVGRIIMTAAAKHLTPVALELGGKCPCIVDSLSSSRDTKVAVNRIVGGKWGS---CAGQACIAIDYVLVEERFAP 266 (484)
T ss_pred EECCHHHHHHHHHHHHhcCCCEEEEecCCCeEEEccCCCCCCHHHHHHHHHHHhccc---CCCCccccCCeEEEcHHHHH
Confidence 9999999998888762 489999999999999997 699999999999998851 34456777777777765543
|
|
| >PRK13968 putative succinate semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.1e-08 Score=103.63 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=94.7
Q ss_pred CCCceeeEEEEeCCCCcc----------------cc--cccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLNT----------------TV--PKKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pn----------------v~--~~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|...- .|- |+ +...+-.|. ..+.+.+.++ +++++|. +.+....|+.
T Consensus 124 ~~P~GvV~~I~PwN-~P~~~~~~~~~~ALaaGN~vv~KPs~~tp~~~-~~l~~~~~~aGlP~gv~~~v~g~~~~~~~l~~ 201 (462)
T PRK13968 124 YRPLGTILAIMPWN-FPLWQVMRGAVPILLAGNGYLLKHAPNVMGCA-QLIAQVFKDAGIPQGVYGWLNADNDGVSQMIN 201 (462)
T ss_pred EeccceEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCCcChHHH-HHHHHHHHHcCcCcCcEEEEecCchhhHHHhc
Confidence 78999999996322 242 11 114555566 6666777776 8999998 4555667665
Q ss_pred CCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
.. .||.|..+||..-=+.|.+.+ +-+||..--.|++++||++|||++.|++.++.++..+.|- .|.+...+..
T Consensus 202 ~~-~v~~V~fTGs~~~G~~i~~~aa~~l~~~~lElGGk~p~iV~~dAdl~~aa~~i~~~~~~~~GQ----~C~a~~rv~V 276 (462)
T PRK13968 202 DS-RIAAVTVTGSVRAGAAIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQ----VCAAAKRFII 276 (462)
T ss_pred CC-CCCEEEEECCHHHHHHHHHHHhhcCCcEEEecCCCCceEECCCCCHHHHHHHHHHHHHhccCC----CCcCCcEEEE
Confidence 44 599999999998877776654 1356544444999999999999999999999999998875 3555555554
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|+.|
T Consensus 277 ~~~i 280 (462)
T PRK13968 277 EEGI 280 (462)
T ss_pred CHhH
Confidence 4444
|
|
| >TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=103.08 Aligned_cols=120 Identities=20% Similarity=0.146 Sum_probs=93.0
Q ss_pred CCCCceeeEEEEeCCCCcc----------------cccc--cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNT----------------TVPK--KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pn----------------v~~~--~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|-..- .|- |+.. +.+-.+. ..+++.+.++ +++|+|+. .+.+.+.|
T Consensus 164 ~~~P~GVV~~I~P~N-~P~~~~~~~i~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~~aGlP~gvv~vv~g~~~~~~~~L 241 (511)
T TIGR01237 164 FYQPRGVAVVISPWN-FPMAIAVGMTVAPIVTGNCVVLKPAETSTVIA-AKIVEILIEAGLPPGVFQFVPGKGSEVGSYL 241 (511)
T ss_pred EEecceeEEEECCCC-cHHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHhCCCCCcEEEccCCCchhHHHH
Confidence 378999999994221 242 1111 4445555 6666777776 99999993 44566666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--------CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--------HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--------~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|.-.||....+.|.+++. .+||+....|++++||+++||+++|++-++.++..+.|-
T Consensus 242 ~~~~~v~~V~fTGs~~~G~~i~~~aa~~~~~~~~~~~~~lElgG~~p~iV~~dAdl~~aa~~i~~~~~~~~GQ 314 (511)
T TIGR01237 242 VNHPKTHLITFTGSREVGCRIYEDAAKVQPGQKHLKRVIAEMGGKDAIIVDESADIEQAVAGAVYSAFGFTGQ 314 (511)
T ss_pred hcCCCCCeEEEECchHHHHHHHHHHhcccccccccceeEeccCCCCeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 55678999999999999999987652 369999999999999999999999999999999998875
|
This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs. |
| >PLN02467 betaine aldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=98.54 E-value=7e-08 Score=104.32 Aligned_cols=134 Identities=21% Similarity=0.151 Sum_probs=99.8
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|-.-- .|-. + +..++-.|+ ..+++.+.++ +++|+|+. ...+.+.|
T Consensus 148 ~~~P~GVv~~I~PwN-~P~~~~~~~i~~ALaaGN~Vv~Kps~~tp~~~-~~l~~~~~eag~P~gvv~~v~g~~~~~~~~L 225 (503)
T PLN02467 148 LKEPLGVVGLITPWN-YPLLMATWKVAPALAAGCTAVLKPSELASVTC-LELADICREVGLPPGVLNVVTGLGTEAGAPL 225 (503)
T ss_pred EEecCceEEEECCCC-hHHHHHHHHHHHHHHcCCEEEEECCCcCcHHH-HHHHHHHHHcCcCcCeEEEEeCCchhHHHHH
Confidence 379999999993211 1421 1 115666777 7777777776 89999983 44455555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..||.|...||...-+.|.+.+. ..||+....|++++||++|||+++|++.++.++..+-|- .|.++..+.
T Consensus 226 ~~~~~v~~v~fTGs~~~g~~v~~~aa~~~~~~~lElGG~~~~iV~~dADl~~A~~~i~~~~f~~~GQ----~C~a~~rv~ 301 (503)
T PLN02467 226 ASHPGVDKIAFTGSTATGRKIMTAAAQMVKPVSLELGGKSPIIVFDDVDLDKAVEWAMFGCFWTNGQ----ICSATSRLL 301 (503)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHHhccCCcEEEECCCCCceEECCCCCHHHHHHHHHHHHHhhcCC----CCCCCcEEE
Confidence 56778999999999999888887652 479988888999999999999999999999998765443 566666665
Q ss_pred hcccc
Q psy11677 344 DQGEM 348 (462)
Q Consensus 344 ~~~~~ 348 (462)
.|..|
T Consensus 302 V~~~i 306 (503)
T PLN02467 302 VHERI 306 (503)
T ss_pred EcHHH
Confidence 55554
|
|
| >cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-07 Score=98.42 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=90.0
Q ss_pred CCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|-..- .|-. +.. ..+-.+. ..|.+.+.++ +++++|. +.+....|+.
T Consensus 94 ~~P~GvV~~I~P~N-~Pl~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~~l~~aglP~gvv~~v~g~~~~~~~l~~ 171 (429)
T cd07100 94 YEPLGVVLGIMPWN-FPFWQVFRFAAPNLMAGNTVLLKHASNVPGCA-LAIEELFREAGFPEGVFQNLLIDSDQVEAIIA 171 (429)
T ss_pred EEeeeEEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHcCCCcCcEEEEeCCchhHHHHhc
Confidence 78999999994211 2531 111 4455666 6677888876 9999998 4666777765
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--Ccce-eeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPV-LGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPv-i~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+..||.|.-.||...-+.|.+.+. ..|+ ++.| |++++||++|||+++|++-++.++..+.|-
T Consensus 172 -~~~i~~v~fTGs~~~g~~i~~~aa~~~~~~~lelg-G~~p~iV~~daDl~~aa~~i~~~~~~~~GQ 236 (429)
T cd07100 172 -DPRVRGVTLTGSERAGRAVAAEAGKNLKKSVLELG-GSDPFIVLDDADLDKAVKTAVKGRLQNAGQ 236 (429)
T ss_pred -CCCCCEEEEECcHHHHHHHHHHHhhcCcceEEecC-CCCeeEECCCCCHHHHHHHHHHHHHhccCC
Confidence 456999999999999888887651 2576 6666 999999999999999999999999998876
|
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate. |
| >cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.4e-08 Score=102.45 Aligned_cols=131 Identities=16% Similarity=0.077 Sum_probs=89.6
Q ss_pred CCCCceeeEEEEeCCCCccccc----------------c--cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVP----------------K--KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~----------------~--~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
++.|+||+++|...- .|-.+. . ..+-.|. ..+.+.+.++ +.+|+|+. .+ +.+.|
T Consensus 139 ~~~P~GVv~~I~p~N-~P~~~~~~~i~~ALaaGN~VvlKPs~~tp~~~-~~l~~~~~~aglP~gvv~~v~g~~~-~~~~L 215 (477)
T cd07113 139 RREPVGVVAGIVPWN-FSVMIAVWKIGAALATGCTIVIKPSEFTPLTL-LRVAELAKEAGIPDGVLNVVNGKGA-VGAQL 215 (477)
T ss_pred EEeecceEEEEcCCC-hHHHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHcCcCCCcEEEEecCch-HHHHH
Confidence 478999999997322 242111 0 3333444 4444777776 89999984 44 66666
Q ss_pred cCCCCccEEeecCChh----HHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 266 SMEKHIDLIIPRGSSD----LVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~----lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
-.+..||.|...||.. +.+.+.++ ..|+..-..|...+||++|||+++|++.++.++..+-|- .|.+...
T Consensus 216 ~~~~~v~~V~fTGS~~~G~~i~~~aa~~--~~~~~lElGGkn~~iV~~dAdl~~aa~~i~~~~f~~~GQ----~C~a~~r 289 (477)
T cd07113 216 ISHPDVAKVSFTGSVATGKKIGRQAASD--LTRVTLELGGKNAAAFLKDADIDWVVEGLLTAGFLHQGQ----VCAAPER 289 (477)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHHhh--cCceEeecCCCCeeEECCCCCHHHHHHHHHHHHHhhCCC----CCcCCcE
Confidence 6677899999999986 55555554 367655555555688999999999999999999875444 5555555
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..+..|
T Consensus 290 v~V~~~i 296 (477)
T cd07113 290 FYVHRSK 296 (477)
T ss_pred EEECHHH
Confidence 5544443
|
NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate. |
| >cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-07 Score=97.37 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=89.2
Q ss_pred CCCCceeeEEEEeCCCCcccc----cc----------------cccccchHHHHH----hhcCCC----CeEEeec--CH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----PK----------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TR 258 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----~~----------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r 258 (462)
.+.|+||+++|++.- .|-.+ .+ +++-+|+ ..+. ++|.++ +++|+|+ ++
T Consensus 102 ~~~P~GvV~~I~p~N-~P~~~~~~~~~~a~ALaaGN~VVlKps~~~p~t~-~~l~~~~~~~l~~aGlP~gvv~~v~g~~~ 179 (454)
T cd07129 102 MLVPLGPVAVFGASN-FPLAFSVAGGDTASALAAGCPVVVKAHPAHPGTS-ELVARAIRAALRATGLPAGVFSLLQGGGR 179 (454)
T ss_pred EeeccceEEEECCCC-CchhhhhhhhhHHHHHHcCCeEEEEcCCCCchHH-HHHHHHHHHHHHHhCCChhheEEeeCCcH
Confidence 479999999998763 26321 11 5555666 6665 555565 8999998 35
Q ss_pred HHHHHHhcCCCCccEE----eecCChhHHHHHHhhCCCcceeeeccceeEEEEccCC---CHHHHHHHHHcccCCCCCC
Q psy11677 259 EEISDLLSMEKHIDLI----IPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDA---DIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 259 ~~~~~ll~~~~~iDli----IPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~a---d~~~a~~i~~nak~~~~~~ 330 (462)
+....|++. ..||+| -+++|..+.+...+..+.+||+....|++++||++|| |+++|++.++.++..+-|-
T Consensus 180 ~~~~~L~~~-~~v~~V~fTGs~~~G~~i~~~aa~~~~~~p~~lElGG~n~~iV~~da~~~dl~~aa~~i~~~~~~~~GQ 257 (454)
T cd07129 180 EVGVALVKH-PAIKAVGFTGSRRGGRALFDAAAARPEPIPFYAELGSVNPVFILPGALAERGEAIAQGFVGSLTLGAGQ 257 (454)
T ss_pred HHHHHHhcC-CCccEEEEeCChHHHHHHHHHhhccCccceeEeecCCcCcEEEeCCcchHHHHHHHHHHHHHHhcCCCC
Confidence 666667764 579999 5555666777776631158999999999999999999 8999999999999987666
|
Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids. |
| >cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like | Back alignment and domain information |
|---|
Probab=98.50 E-value=3e-07 Score=97.51 Aligned_cols=132 Identities=17% Similarity=0.100 Sum_probs=97.3
Q ss_pred CCCCceeeEEEEeCCCCcccc----------------c--ccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----------------P--KKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----------------~--~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-.+ . ...+..|+ ..+.+.+.++ +++++++ +.+....|++
T Consensus 97 ~~~P~Gvv~~i~p~N-~P~~~~~~~~~~ALaaGN~Vi~Kps~~~p~~~-~~~~~~~~~a~p~g~v~~v~g~~~~~~~l~~ 174 (433)
T cd07134 97 RYEPKGVCLIISPWN-YPFNLAFGPLVSAIAAGNTAILKPSELTPHTS-AVIAKIIREAFDEDEVAVFEGDAEVAQALLE 174 (433)
T ss_pred EEecCCEEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCccCHHHH-HHHHHHHHHhCCcCEEEEEeCChhHHHHHHh
Confidence 379999999986422 24321 1 15566677 6666555554 8999998 5766667776
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
. . +|.|...||....+.|.+.+. ..|+.....|+++++|++|||+++|++.++.++..+-|- .|.+...+..
T Consensus 175 ~-~-v~~v~ftGs~~~g~~i~~~aa~~~~~~~lelgG~~~~iV~~dAD~~~aa~~i~~~~~~~~GQ----~C~a~~rv~V 248 (433)
T cd07134 175 L-P-FDHIFFTGSPAVGKIVMAAAAKHLASVTLELGGKSPTIVDETADLKKAAKKIAWGKFLNAGQ----TCIAPDYVFV 248 (433)
T ss_pred C-C-CCEEEEECChHHHHHHHHHHHhcCCcEEEEccCCCcEEECCCCCHHHHHHHHHHHhhcCcCC----cccCCcEEEE
Confidence 4 3 999999999999998876642 368877788999999999999999999999999997665 3444444444
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|+.|
T Consensus 249 ~~~v 252 (433)
T cd07134 249 HESV 252 (433)
T ss_pred CHHH
Confidence 4443
|
Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD. |
| >cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-07 Score=99.16 Aligned_cols=132 Identities=11% Similarity=0.061 Sum_probs=101.0
Q ss_pred CCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCC-----CCeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPR-----YPLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~-----~~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++|+..- .|-.+ +...+..++ ..+++.+.+ .+++++|. +.+....|
T Consensus 97 ~~~P~Gvv~~I~p~N-~P~~~~~~~~~~AL~aGN~vvlKps~~~p~~~-~~l~~~l~~ag~~P~g~~~~v~g~~~~~~~l 174 (442)
T cd07084 97 YRWPYGPVLVIGAFN-FPLWIPLLQLAGALAMGNPVIVKPHTAVSIVM-QIMVRLLHYAGLLPPEDVTLINGDGKTMQAL 174 (442)
T ss_pred EeecceeEEEEcCCc-cHhHHHHHHHHHHHHcCCeEEEECCCCchHHH-HHHHHHHHHhCCCCccceEEeeCCcHHHHHH
Confidence 479999999998763 25411 004455566 666644433 38899998 44555556
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCC-CHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDA-DIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~a-d~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
+...+ +|+|..+||....+.|.+++..+||.....|++++||+++| |++.|++-++.++..+- ...|.+...+.
T Consensus 175 ~~~~~-v~~V~fTGs~~~g~~i~~~a~~~~v~lElgG~~~~iV~~dadd~~~a~~~i~~~~~~~~----GQ~C~a~~rl~ 249 (442)
T cd07084 175 LLHPN-PKMVLFTGSSRVAEKLALDAKQARIYLELAGFNWKVLGPDAQAVDYVAWQCVQDMTACS----GQKCTAQSMLF 249 (442)
T ss_pred HcCCC-CCEEEEECCHHHHHHHHHhccCCcEEEeccCcCcEEECCChhhHHHHHHHHHHHHhccc----CCeecCCcEEE
Confidence 66555 99999999999999999998547999999999999999999 69999999999988754 44777777777
Q ss_pred hccc
Q psy11677 344 DQGE 347 (462)
Q Consensus 344 ~~~~ 347 (462)
.+..
T Consensus 250 V~~~ 253 (442)
T cd07084 250 VPEN 253 (442)
T ss_pred EeCC
Confidence 6666
|
ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway. |
| >cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-07 Score=97.58 Aligned_cols=131 Identities=16% Similarity=0.098 Sum_probs=92.3
Q ss_pred CCCCceeeEEEEeCCCCccc----------------cc--ccccccchHHHHHhhcCCC----CeEEeecCHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VP--KKHAKTSQCKYFTKMLPRY----PLHSQVSTREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~--~~ea~~sn~~~l~~al~~~----~~v~~v~~r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-. +. .+.+-.|. ..+.+.+.++ +++++|+....+.+.|-
T Consensus 94 ~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VI~Kps~~~~~~~-~~l~~~~~~ag~P~g~~~~v~g~~~~~~~l~ 171 (431)
T cd07095 94 RHRPHGVMAVFGPFN-FPGHLPNGHIVPALLAGNTVVFKPSELTPAVA-ELMVELWEEAGLPPGVLNLVQGGRETGEALA 171 (431)
T ss_pred EEecceEEEEECCCc-hHHHHHHHHHHHHHhcCCEEEeeCCCCCcHHH-HHHHHHHHHhCcChhHheEEeCcHHHHHHHh
Confidence 378999999996422 2421 11 15556666 6666777775 89999984234566666
Q ss_pred CCCCccEEeecCChhHHHHHHhhC--C-Ccc-eeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKS--Q-HIP-VLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNL 342 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s--~-~iP-vi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~ 342 (462)
.+..||.|...||..--+.|.+.. + ..| +++.| |++++||++|||+++|++.++.++..+-|- .|.+...+
T Consensus 172 ~~~~v~~v~ftGs~~~g~~i~~~~a~~~~~~~~lElg-G~~~~iV~~daDl~~aa~~i~~~~~~~~GQ----~C~a~~rv 246 (431)
T cd07095 172 AHEGIDGLLFTGSAATGLLLHRQFAGRPGKILALEMG-GNNPLVVWDVADIDAAAYLIVQSAFLTAGQ----RCTCARRL 246 (431)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHhhccCCCcEEEECC-CCCeEEECCCCCHHHHHHHHHHHHHHhCCC----CCCCCeEE
Confidence 667799999999999777666542 1 245 55666 999999999999999999999999987665 34444444
Q ss_pred hhcc
Q psy11677 343 ADQG 346 (462)
Q Consensus 343 ~~~~ 346 (462)
..+.
T Consensus 247 ~V~~ 250 (431)
T cd07095 247 IVPD 250 (431)
T ss_pred EEcC
Confidence 4333
|
N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. |
| >cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-07 Score=98.68 Aligned_cols=134 Identities=19% Similarity=0.155 Sum_probs=98.6
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+|||++|...- .|-. +.. ..+-.|+ ..+++.+.++ +++++|+ +.+.+.+.|
T Consensus 120 ~~~P~GVV~~I~P~N-~P~~~~~~~~~~AL~aGN~vvlKps~~~p~~~-~~l~~~~~~aglP~g~~~~v~g~~~~~~~~l 197 (459)
T cd07089 120 RREPVGVVAAITPWN-FPFFLNLAKLAPALAAGNTVVLKPAPDTPLSA-LLLGEIIAETDLPAGVVNVVTGSDNAVGEAL 197 (459)
T ss_pred EEeeccEEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHcCCCccceEEEecCcHHHHHHH
Confidence 489999999997532 2521 111 5566677 7777877776 8999999 344466666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..+|.|...||...-+.|.+.+. ..||.....|+..++|+++||+++|++-++.+++.+-|- .|.++..+.
T Consensus 198 ~~~~~~~~v~ftGs~~~g~~v~~~aa~~~~~~~lelgG~n~~iV~~dadl~~aa~~i~~~~~~~sGQ----~C~a~~~v~ 273 (459)
T cd07089 198 TTDPRVDMVSFTGSTAVGRRIMAQAAATLKRVLLELGGKSANIVLDDADLAAAAPAAVGVCMHNAGQ----GCALTTRLL 273 (459)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHHhcCCcEEEECCCCCeeEECCCCCHHHHHHHHHHHHHHhcCC----cccCCeEEE
Confidence 67778999999999999999888651 257765556999999999999999999999999886544 444444444
Q ss_pred hcccc
Q psy11677 344 DQGEM 348 (462)
Q Consensus 344 ~~~~~ 348 (462)
.++.|
T Consensus 274 V~~~v 278 (459)
T cd07089 274 VPRSR 278 (459)
T ss_pred EcHHH
Confidence 44443
|
The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD. |
| >cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-07 Score=101.21 Aligned_cols=132 Identities=19% Similarity=0.142 Sum_probs=93.5
Q ss_pred CCCCceeeEEEEeCCCCcccc------------------cccccccchHHHHHhhcCCC---CeEEeecC-HHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV------------------PKKHAKTSQCKYFTKMLPRY---PLHSQVST-REEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~------------------~~~ea~~sn~~~l~~al~~~---~~v~~v~~-r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-.+ +...+-.|+ ..+++.+.++ +++++|.. ...+.+.|-
T Consensus 133 ~~~P~GVV~~I~PwN-~P~~~~~~~i~~ALaaGN~VV~KPs~~tp~~~-~~l~~l~~~~lP~gvv~~v~g~~~~~~~~L~ 210 (480)
T cd07559 133 FHEPLGVVGQIIPWN-FPLLMAAWKLAPALAAGNTVVLKPASQTPLSI-LVLMELIGDLLPKGVVNVVTGFGSEAGKPLA 210 (480)
T ss_pred EEeccceEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECchhhhHHH-HHHHHHHHHhCCcCeEEEEecCchHHHHHHh
Confidence 489999999997221 23211 115555666 6666555554 99999983 455767776
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--Cccee-eeccceeEEEEccCC-----CHHHHHHHHHcccCCCCCCCCchhHHH
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVL-GHAEGICHVYVDKDA-----DIRKAIKIARSGSRVLQGLNPEDRAKA 338 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi-~~~~G~ch~yvd~~a-----d~~~a~~i~~nak~~~~~~~~~~~~~~ 338 (462)
.+..||.|...||....+.|.+.+. .+||+ ++| |....+|.+|| |+++|++-++.++..+-|= .|.+
T Consensus 211 ~~~~v~~V~fTGs~~~g~~i~~~aa~~~~p~~lElG-Gk~p~iV~~dA~~~~~Dl~~aa~~i~~~~~~~~GQ----~C~a 285 (480)
T cd07559 211 SHPRIAKLAFTGSTTVGRLIMQYAAENLIPVTLELG-GKSPNIFFDDAMDADDDFDDKAEEGQLGFAFNQGE----VCTC 285 (480)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHHhccCCcEEeccC-CCCeEEEcCCccccccCHHHHHHHHHHHHHhhCCC----CCCC
Confidence 7778999999999999988877652 47876 555 77777788888 9999999999998886544 4555
Q ss_pred HHHhhhccc
Q psy11677 339 IYNLADQGE 347 (462)
Q Consensus 339 ~~~~~~~~~ 347 (462)
...+..|..
T Consensus 286 ~~rv~V~~~ 294 (480)
T cd07559 286 PSRALVQES 294 (480)
T ss_pred CeEEEEcHH
Confidence 554444443
|
Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences. |
| >cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-07 Score=99.53 Aligned_cols=119 Identities=24% Similarity=0.242 Sum_probs=91.6
Q ss_pred CCCCceeeEEEEeCCCCcc----------------ccc--ccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNT----------------TVP--KKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pn----------------v~~--~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|...- .|- |+. ...+..|+ ..+.+.+.++ +++|+++ +...+.+.|
T Consensus 117 ~~~P~Gvv~~I~P~N-~P~~~~~~~~~~ALaaGN~VilKps~~~p~~~-~~l~~~l~~aglP~g~v~~v~g~~~~~~~~l 194 (451)
T cd07146 117 LREPLGVVLAITPFN-HPLNQVAHKIAPAIAANNRIVLKPSEKTPLSA-IYLADLLYEAGLPPDMLSVVTGEPGEIGDEL 194 (451)
T ss_pred EEeccceEEEEccCC-hHHHHHHHHHHHHHHcCCEEEEECCCCchHHH-HHHHHHHHHcCcCccceEEEecCchHHHHHH
Confidence 478999999993222 132 111 15556677 7777777776 9999998 344566666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCCC-cceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQH-IPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~~-iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|...||....+.|.+.+.. -++++.| |++++||++|||++.|++.++.++..+.|-
T Consensus 195 ~~~~~i~~V~fTGs~~~g~~i~~~a~~~~~~lElG-G~~p~iV~~daDl~~aa~~i~~~~~~~~GQ 259 (451)
T cd07146 195 ITHPDVDLVTFTGGVAVGKAIAATAGYKRQLLELG-GNDPLIVMDDADLERAATLAVAGSYANSGQ 259 (451)
T ss_pred hcCCCCCEEEEECCHHHHHHHHHHhcCCceeeecC-CCceEEECCCCCHHHHHHHHHHHHHhhCCC
Confidence 666789999999999999999886642 4566765 999999999999999999999999998775
|
Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD. |
| >cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.8e-07 Score=97.91 Aligned_cols=134 Identities=19% Similarity=0.145 Sum_probs=96.2
Q ss_pred CCCCceeeEEEEeCCCCccc----------------cc--ccccccchHHHHHhhcCCC---CeEEeecC-HHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VP--KKHAKTSQCKYFTKMLPRY---PLHSQVST-REEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~--~~ea~~sn~~~l~~al~~~---~~v~~v~~-r~~~~~ll~ 266 (462)
.+.|+||+++|...- .|-. +. ...+-.|. ..+++.+.+. +++|+|+. ...+.+.|-
T Consensus 133 ~~~P~GVV~~I~PwN-~Pl~~~~~~i~~AL~aGN~VvlKPs~~~p~~~-~~l~~~~~~~lP~g~~~~v~g~~~~~~~~l~ 210 (475)
T cd07117 133 LREPIGVVGQIIPWN-FPFLMAAWKLAPALAAGNTVVIKPSSTTSLSL-LELAKIIQDVLPKGVVNIVTGKGSKSGEYLL 210 (475)
T ss_pred EEeecceEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCccCcHHH-HHHHHHHHHhCCcCcEEEEecCcHHHHHHHh
Confidence 489999999995322 2421 11 15555666 6666555544 89999984 455666555
Q ss_pred CCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
.+..||.|...||...-+.|.+.+ +.+|+..-..|++++||++|||+++|++-++.++..+-| ..|.+...+..
T Consensus 211 ~~~~v~~v~fTGs~~~g~~i~~~aa~~~~~~~lElgGk~p~iV~~dADl~~aa~~i~~~~~~~~G----Q~C~a~~rv~V 286 (475)
T cd07117 211 NHPGLDKLAFTGSTEVGRDVAIAAAKKLIPATLELGGKSANIIFDDANWDKALEGAQLGILFNQG----QVCCAGSRIFV 286 (475)
T ss_pred cCCCCCEEEEECcHHHHHHHHHHHhccCCcEEEeCCCCCeEEECCCCChHHHHHHHHHHHhhccC----CCCCCCeEEEE
Confidence 677899999999999877776643 147865555699999999999999999999999888544 46666666666
Q ss_pred cccc
Q psy11677 345 QGEM 348 (462)
Q Consensus 345 ~~~~ 348 (462)
|..|
T Consensus 287 ~~~i 290 (475)
T cd07117 287 QEGI 290 (475)
T ss_pred eHHH
Confidence 5554
|
Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD. |
| >cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.8e-07 Score=98.84 Aligned_cols=132 Identities=17% Similarity=0.092 Sum_probs=87.6
Q ss_pred CCCCceeeEEEE-eCCCCcccccc------------------cccccchHHHHHhhcCCC---CeEEeecC--HHHHHHH
Q psy11677 209 GGTPVEVLAEIW-KNETLNTTVPK------------------KHAKTSQCKYFTKMLPRY---PLHSQVST--REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~Iy-Esr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~---~~v~~v~~--r~~~~~l 264 (462)
++.|+||+++|+ +.. |-.+.- ..+-.|+ ..+++.+.++ +++|+|+. ++....|
T Consensus 133 ~~~P~GVv~~I~PwN~--P~~~~~~~~~~ALaaGN~VV~KPs~~tp~~~-~~l~~l~~~alP~gvv~~v~g~~~~~~~~L 209 (479)
T cd07116 133 FHEPLGVVGQIIPWNF--PLLMATWKLAPALAAGNCVVLKPAEQTPASI-LVLMELIGDLLPPGVVNVVNGFGLEAGKPL 209 (479)
T ss_pred EEeccceEEEECCCch--HHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHHCCcCcEEEEecCchhHHHHH
Confidence 489999999998 555 743211 5556666 6666555554 99999983 5545556
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC--Cccee-eeccceeEEEEcc-----CCCHHHHHHHHHcccCCCCCCCCchhH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVL-GHAEGICHVYVDK-----DADIRKAIKIARSGSRVLQGLNPEDRA 336 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi-~~~~G~ch~yvd~-----~ad~~~a~~i~~nak~~~~~~~~~~~~ 336 (462)
++..+ ||.|...||...-+.|.+.+. .+||+ +.|..+++++++. +||+++|++-++.+ .. |.-..|
T Consensus 210 ~~~~~-v~~V~fTGS~~~G~~i~~~aa~~~~p~~lElGGk~p~iV~~da~~~~~adl~~A~~~i~~~-~~----~~GQ~C 283 (479)
T cd07116 210 ASSKR-IAKVAFTGETTTGRLIMQYASENIIPVTLELGGKSPNIFFADVMDADDAFFDKALEGFVMF-AL----NQGEVC 283 (479)
T ss_pred hcCCC-cCEEEEECCHHHHHHHHHHHHcCCCeEEEECCCCCeEEEecCcccccccCHHHHHHHHHHH-Hh----cCCCCC
Confidence 65544 999999999976655554431 36885 7776666666654 48999999977653 22 344556
Q ss_pred HHHHHhhhccccc
Q psy11677 337 KAIYNLADQGEMD 349 (462)
Q Consensus 337 ~~~~~~~~~~~~~ 349 (462)
.+...+..|..|.
T Consensus 284 ~a~~rv~V~~~i~ 296 (479)
T cd07116 284 TCPSRALIQESIY 296 (479)
T ss_pred CCCeEEEEcHHHH
Confidence 6666665555543
|
Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression. |
| >cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-06 Score=94.44 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=94.5
Q ss_pred CCCCceeeEEEEeCCCCc------c----------cccc--cccccchHHH----HHhhcCCC----CeEEeecC-H-HH
Q psy11677 209 GGTPVEVLAEIWKNETLN------T----------TVPK--KHAKTSQCKY----FTKMLPRY----PLHSQVST-R-EE 260 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~P------n----------v~~~--~ea~~sn~~~----l~~al~~~----~~v~~v~~-r-~~ 260 (462)
.++|+||+++|--.- .| . |+.. ..+..|+ .. +.+.|.++ ++||+|+. . +.
T Consensus 190 ~~~P~GVv~vI~p~n-fP~~~~~~~i~~ALaaGN~VVvKPs~~a~ls~-~~~~~~i~~~l~eAGlP~gvv~~v~g~~~~~ 267 (549)
T cd07127 190 TVVPRGVALVIGCST-FPTWNGYPGLFASLATGNPVIVKPHPAAILPL-AITVQVAREVLAEAGFDPNLVTLAADTPEEP 267 (549)
T ss_pred EEecccEEEEEeCcC-ChHHHHHHHHHHHHhcCCeEEEECCcccchhH-HHHHHHHHHHHHHcCcCcccEEEEeCCCcHH
Confidence 478999999993221 12 1 1111 5666665 32 33778777 89999983 2 45
Q ss_pred HHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 261 ISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 261 ~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+.+.|-.+..||.|...||...-+.|.+++...||+....|+.+++|+++||++.|++.++-++..+-|=
T Consensus 268 ~~~~L~~~p~v~~I~FTGS~~~G~~i~~~a~~~~v~~ElGGkn~~IV~~dADl~~aa~~i~~~~f~~sGQ 337 (549)
T cd07127 268 IAQTLATRPEVRIIDFTGSNAFGDWLEANARQAQVYTEKAGVNTVVVDSTDDLKAMLRNLAFSLSLYSGQ 337 (549)
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHhccCcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHccCCC
Confidence 6666666777999999999999999999887679999999999999999999999999999999998877
|
Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes. |
| >PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.5e-07 Score=106.35 Aligned_cols=183 Identities=15% Similarity=0.159 Sum_probs=121.8
Q ss_pred HHHHHHhCCchhhcCchhcH-----HH---HHHHHhhccccccccccCC----CCCCCCceeeEEEEeCCCCcccc----
Q psy11677 166 SATWALDRGVSVVICNGMQK-----EA---IKQIVAGRKIGTFFTDASA----QSGGTPVEVLAEIWKNETLNTTV---- 229 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~-----~~---~~~~~~~~~i~t~~a~~~d----~~~~~PlGVi~~IyEsr~~Pnv~---- 229 (462)
+|+.|+.+.+++...=..+. ++ +...++.++ ..+.... ...+.|+||+++|-.-- .|=.+
T Consensus 713 ~Adlle~~~~eL~~l~~~EaGKt~~~A~~EV~eaidflr---yyA~~a~~~~~~~~~~PlGVV~~IsPWN-FPlai~~g~ 788 (1318)
T PRK11809 713 AADLMEAQMQTLMGLLVREAGKTFSNAIAEVREAVDFLR---YYAGQVRDDFDNDTHRPLGPVVCISPWN-FPLAIFTGQ 788 (1318)
T ss_pred HHHHHHHCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHhcCCceeecccEEEEECCCc-cHHHHHHHH
Confidence 77777777777654322211 11 344444444 2222211 13478999999995211 13211
Q ss_pred -----------cccccccchH--HHHHhhcCCC----CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC-
Q psy11677 230 -----------PKKHAKTSQC--KYFTKMLPRY----PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS- 290 (462)
Q Consensus 230 -----------~~~ea~~sn~--~~l~~al~~~----~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s- 290 (462)
+=|-+-.|.+ ..+++.+.++ +++|+|+ +.+.+.+.|-.+..||.|+..||...-+.|.+.+
T Consensus 789 iaaALaAGN~VV~KPseqTpl~a~~lv~ll~eAGlP~gvlqlv~G~g~~vg~~Lv~~p~V~~V~FTGSt~tg~~I~~~aA 868 (1318)
T PRK11809 789 VAAALAAGNSVLAKPAEQTPLIAAQAVRILLEAGVPAGVVQLLPGRGETVGAALVADARVRGVMFTGSTEVARLLQRNLA 868 (1318)
T ss_pred HHHHHHcCCeEEEeCCCCcHHHHHHHHHHHHHhCcCcCeEEEeeCCcHHHHHHHhcCCCcCEEEEeCCHHHHHHHHHHHh
Confidence 1144444431 2333777776 9999999 4667888888888899999999999999988762
Q ss_pred -------CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccccChhhH
Q psy11677 291 -------QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDVSGLPCL 356 (462)
Q Consensus 291 -------~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (462)
+.+|++....|++.++||.|||++.|++-++.|..++-|= +|.++..+..|+.|...+..+|
T Consensus 869 ~~l~~~g~~~pliaElGGkNa~IVdsdAdle~Av~~iv~sAF~~aGQ----rCsA~~rl~V~e~Iad~fl~~L 937 (1318)
T PRK11809 869 GRLDPQGRPIPLIAETGGQNAMIVDSSALTEQVVADVLASAFDSAGQ----RCSALRVLCLQDDVADRTLKML 937 (1318)
T ss_pred hhcccccCceeEEEecCCccceEECCCCCHHHHHHHHHHHHHhcCCC----ccccCcEEEEcHHHHHHHHHHH
Confidence 1279999999999999999999999999998877664433 5777777777776654444433
|
|
| >PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.2e-07 Score=104.16 Aligned_cols=192 Identities=14% Similarity=0.130 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcC-----chhcHHH---HHHHHhhccccccccc----c
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVIC-----NGMQKEA---IKQIVAGRKIGTFFTD----A 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~A-----N~~D~~~---~~~~~~~~~i~t~~a~----~ 204 (462)
+......|++|.+.... +|+.|..+++++... +..-.++ +...++.++ ..+. +
T Consensus 592 v~~Av~aA~~A~~~W~~~~~~~Ra~iL~raAdll~~~~~eL~~l~~~E~GKt~~ea~~Ev~eaid~lr---~ya~~a~~~ 668 (1208)
T PRK11905 592 VERALAAAQAAFPEWSATPAAERAAILERAADLMEAHMPELFALAVREAGKTLANAIAEVREAVDFLR---YYAAQARRL 668 (1208)
T ss_pred HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 45555556665543322 777777777665432 2111111 333333333 2222 1
Q ss_pred CCCCCCCCceeeEEEEeCCCCcccc---------------cc---cccccchHHHHHhhcCCC----CeEEeecC-HHHH
Q psy11677 205 SAQSGGTPVEVLAEIWKNETLNTTV---------------PK---KHAKTSQCKYFTKMLPRY----PLHSQVST-REEI 261 (462)
Q Consensus 205 ~d~~~~~PlGVi~~IyEsr~~Pnv~---------------~~---~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~ 261 (462)
.....+.|+||+++|-.-- .|-.+ += ..+-.+. ..+++.+.++ +++|+|+. .+.+
T Consensus 669 ~~~~~~~P~GVv~~IsPwN-fPlai~~g~i~aALaaGN~VV~KPse~tpl~a-~~l~~ll~eAGlP~gvl~lV~G~g~~v 746 (1208)
T PRK11905 669 LNGPGHKPLGPVVCISPWN-FPLAIFTGQIAAALVAGNTVLAKPAEQTPLIA-ARAVRLLHEAGVPKDALQLLPGDGRTV 746 (1208)
T ss_pred cCCceecCccEEEEEcCCc-CHHHHHHHHHHHHHHcCCEEEEeCCcccHHHH-HHHHHHHHHcCCCcccEEEeeCCchHH
Confidence 1234578999999995211 14211 11 3333444 4445777776 99999994 5557
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhC-----CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKS-----QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRA 336 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s-----~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~ 336 (462)
.+.|-.+..||.|+..||...-+.|.+.. ..+|++.-..|.+.++||+|||+++|++-++.|+.++.|= +|
T Consensus 747 g~~Lv~~p~v~~V~FTGSt~vg~~I~~~~A~~~~~~~pli~ElGGkN~~IV~~dAdle~Av~~iv~saF~~aGQ----~C 822 (1208)
T PRK11905 747 GAALVADPRIAGVMFTGSTEVARLIQRTLAKRSGPPVPLIAETGGQNAMIVDSSALPEQVVADVIASAFDSAGQ----RC 822 (1208)
T ss_pred HHHHHcCCCcCEEEEeCCHHHHHHHHHHHHhhcCCCCeEEEecCCcCeEEEcCCCCHHHHHHHHHHHHHhcCCC----cc
Confidence 77777778899999999999888877752 1389999999999999999999999999999998887665 56
Q ss_pred HHHHHhhhccccc
Q psy11677 337 KAIYNLADQGEMD 349 (462)
Q Consensus 337 ~~~~~~~~~~~~~ 349 (462)
.|...+..|+.|.
T Consensus 823 sA~~rl~V~~si~ 835 (1208)
T PRK11905 823 SALRVLCLQEDVA 835 (1208)
T ss_pred ccCcEEEEehhHH
Confidence 6666665665553
|
|
| >TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=93.01 Aligned_cols=146 Identities=14% Similarity=0.074 Sum_probs=106.5
Q ss_pred CCCceeeEEEEeCCCCcc----------------cccc--cccccchHH----HHHhhcCCC----CeEEeecC--HHHH
Q psy11677 210 GTPVEVLAEIWKNETLNT----------------TVPK--KHAKTSQCK----YFTKMLPRY----PLHSQVST--REEI 261 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pn----------------v~~~--~ea~~sn~~----~l~~al~~~----~~v~~v~~--r~~~ 261 (462)
+.|+||+++|-..- .|- |+.. ..+..|+ . .+.+.|.++ ++||+|+. .+.+
T Consensus 191 ~~P~GVv~vI~PwN-fP~~~~~~~l~~ALaaGN~VVlKPs~~tpl~~-~~~~~~l~e~l~eAGlP~gvv~lv~g~~g~~~ 268 (551)
T TIGR02288 191 IVPRGIALVIGCST-FPTWNTYPGLFASLATGNPVLVKPHPGAILPL-ALTVQVAREVLGEAGFDPNLVTLAAFDPGHEA 268 (551)
T ss_pred EEecCeEEEEcCcc-cHHHHHHHHHHHHHHcCCeEEEECCcccchhH-HHHHHHHHHHHHHcCcChhHEEEecCCCcHHH
Confidence 68999999993111 132 1111 4444444 3 233777776 99999984 4556
Q ss_pred HHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 262 SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 262 ~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.+.|-.+..||.|--.||...=+.|.+++...||..-..|+++++|++|||++.|++-++.++..+-|= -|
T Consensus 269 ~~~L~~~p~v~~I~FTGSt~~G~~I~~~aa~~~v~lElGGknp~IV~~dADld~aa~~i~~~~f~~sGQ---------~C 339 (551)
T TIGR02288 269 AQRLATDPAVRIIDFTGSNAFGQWLEQNARQAQVYTEKAGVNTVIIESTDDYKAMLRNLAFSLSLYSGQ---------MC 339 (551)
T ss_pred HHHHHhCCCccEEEEECCHHHHHHHHHhcccCcEEeecCCcCeEEEcCCCCHHHHHHHHHHHHHhhCCC---------CC
Confidence 666666777999999999999999999886689999999999999999999999999999999998777 55
Q ss_pred hhhcccc-cc----------cChhhHHHHHHhHHHH
Q psy11677 342 LADQGEM-DV----------SGLPCLLLFIRLGSLF 366 (462)
Q Consensus 342 ~~~~~~~-~~----------~~~~~~~~~~~~~~~~ 366 (462)
.+-|-++ .. ++.+.+.+|.+....+
T Consensus 340 ta~~ri~V~~~~i~~~~g~~i~def~~~L~~~~~~l 375 (551)
T TIGR02288 340 TTTQAILVPRDGIRTDQGRKSYDEVAADLATAIDGL 375 (551)
T ss_pred CCCCEEEEeccccccccchhHHHHHHHHHHHHHHHh
Confidence 5555544 21 3556666655544444
|
This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278. |
| >TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-06 Score=95.48 Aligned_cols=95 Identities=34% Similarity=0.527 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHH
Q psy11677 362 LGSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGL 441 (462)
Q Consensus 362 ~~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l 441 (462)
+...++.+|++|.+..+.++.++|.++|+++++.|++++++|.+||.||+..++..+++..+++||.++..+++.+++.+
T Consensus 287 ~~~~~~~~A~~A~~~w~~~~~~~R~~~L~~la~~l~~~~eei~~e~gkdl~~a~~~~~~~~~~~el~~~~~ei~~~~~~l 366 (715)
T TIGR01092 287 GERDMAVAARESSRMLQALSSEQRKEILHDIADALEDNEDEILAENKKDVAAAQGAGYAASLVARLSMSPSKISSLAISL 366 (715)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCcchhHHHHHhCCHHHHHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHhCCCCCcccchh
Q psy11677 442 KQIAESSHTNVGKFVK 457 (462)
Q Consensus 442 ~~ia~l~dDPvg~v~~ 457 (462)
+..++.. +|+|++..
T Consensus 367 ~~~a~~~-~~~g~~~~ 381 (715)
T TIGR01092 367 RQLAAME-DPIGRVLK 381 (715)
T ss_pred HHHhcCC-Cccccccc
Confidence 9999988 79998763
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. |
| >PLN02174 aldehyde dehydrogenase family 3 member H1 | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-06 Score=92.75 Aligned_cols=136 Identities=24% Similarity=0.245 Sum_probs=99.6
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~ 266 (462)
.+.|+||+++|..-- .|-. +.. ..+-.|+ ..+.+.+.+. +.+++|. ..+....|+.
T Consensus 109 ~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKPse~tp~~~-~~l~~l~~~~lp~gvv~vv~G~~~~~~~l~~ 186 (484)
T PLN02174 109 VSEPLGVVLVISAWN-YPFLLSIDPVIGAISAGNAVVLKPSELAPASS-ALLAKLLEQYLDSSAVRVVEGAVTETTALLE 186 (484)
T ss_pred EEecceEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEECCCCCHHHH-HHHHHHHHHhCCCCEEEEEECChHHHHHHhc
Confidence 489999999997431 1531 111 4455666 6666655554 9999998 5666777886
Q ss_pred CCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccC-CCCCCCCchhHHHHHHhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR-VLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~-~~~~~~~~~~~~~~~~~~ 343 (462)
..+|.|.-.||...-+.|.+.+ +..||..--.|.++++|++|||+++|++-++.+|. .+-| ..|.+...+.
T Consensus 187 --~~vd~V~FTGS~~~G~~I~~~aa~~l~~v~LELGGk~p~iV~~dADl~~Aa~~i~~g~f~~n~G----Q~C~a~~rv~ 260 (484)
T PLN02174 187 --QKWDKIFYTGSSKIGRVIMAAAAKHLTPVVLELGGKSPVVVDSDTDLKVTVRRIIAGKWGCNNG----QACISPDYIL 260 (484)
T ss_pred --ccCCEEEEECChHHHHHHHHHHHhcCCcEEEecCCCCeEEEcCCCCHHHHHHHHHHHHhhCCCC----CCCCcCcEEE
Confidence 5699999999999888887764 24899999999999999999999999999999996 3333 3566665555
Q ss_pred hcccccccC
Q psy11677 344 DQGEMDVSG 352 (462)
Q Consensus 344 ~~~~~~~~~ 352 (462)
.+..|...+
T Consensus 261 V~~~i~d~f 269 (484)
T PLN02174 261 TTKEYAPKV 269 (484)
T ss_pred EeHHHHHHH
Confidence 555543333
|
|
| >cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-06 Score=93.60 Aligned_cols=134 Identities=18% Similarity=0.134 Sum_probs=93.7
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-. +.. ..+-+|+ ..|++.+.++ +++++|+ +.+.+.+.|
T Consensus 121 ~~~P~GvV~~i~p~N-~P~~~~~~~~~~ALaaGN~Vv~Kps~~~p~~~-~~l~~~~~~aGlP~g~v~~v~g~~~~~~~~l 198 (462)
T cd07112 121 TREPLGVVGAVVPWN-FPLLMAAWKIAPALAAGNSVVLKPAEQSPLTA-LRLAELALEAGLPAGVLNVVPGFGHTAGEAL 198 (462)
T ss_pred EEeeeeeEEEECCCc-hHHHHHHHHHHHHHHcCCeeeeeCCCCCCHHH-HHHHHHHHhcCCCCCcEEEEeCCCchHHHHH
Confidence 478999999995322 2421 111 5666777 7777888777 8999998 345577777
Q ss_pred cCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCC-CHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDA-DIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~a-d~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
-.+..+|.|...||...-+.|.+.+ +..||+.-..|...++|+++| |+++|++.++.++..+-|- .|.++..
T Consensus 199 ~~~~~v~~V~fTGs~~~g~~i~~~aa~~~~~~~~lelgG~n~~iV~~da~dl~~aa~~i~~~~~~~~GQ----~C~a~~~ 274 (462)
T cd07112 199 GLHMDVDALAFTGSTEVGRRFLEYSGQSNLKRVWLECGGKSPNIVFADAPDLDAAAEAAAAGIFWNQGE----VCSAGSR 274 (462)
T ss_pred hcCCCcCEEEEECCHHHHHHHHHHHHHhcCCEEEecCCCCCeEEECCCCcCHHHHHHHHHHHHHhccCC----CCCCCee
Confidence 7778899999999998666655522 136664444466677777788 9999999999999986554 4555555
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
+..++.+
T Consensus 275 v~V~~~v 281 (462)
T cd07112 275 LLVHESI 281 (462)
T ss_pred EEEcHHH
Confidence 5544443
|
NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD. |
| >KOG0456|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-06 Score=89.85 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=77.2
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|--|+.++..+|+|-+-+|.|||||+++||+ -|.|++++.++++|+.+++- -++.+... ...+.+.+..
T Consensus 283 G~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaY-fGaqVlHP------~sM~~~~~~~ 355 (559)
T KOG0456|consen 283 GGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAY-FGAQVLHP------FSMRPAREGR 355 (559)
T ss_pred CchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHh-hhhhhccc------cccchhhccC
Confidence 7899999999999999999999999999999998 89999999999999977641 12233322 1344567778
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
+|+.|-|...|- +.||.|.++..
T Consensus 356 IPvRvKN~~NP~---------~~GTvI~~d~~ 378 (559)
T KOG0456|consen 356 IPVRVKNSYNPT---------APGTVITPDRD 378 (559)
T ss_pred cceEeecCCCCC---------CCceEeccchh
Confidence 899999988873 56999998754
|
|
| >PLN02418 delta-1-pyrroline-5-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.6e-06 Score=91.39 Aligned_cols=94 Identities=32% Similarity=0.518 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHH
Q psy11677 363 GSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLK 442 (462)
Q Consensus 363 ~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~ 442 (462)
--.++++|++|.+..+.++.++|.++|+++|+.|++++++|.++|.+|++.+++.|.+.++.+|+.++...++.+++.++
T Consensus 296 ~~~~~~aA~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~~ela~~~~~d~~~~~E~G~~k~~~~~~~~~~~ev~~~~~~~~ 375 (718)
T PLN02418 296 AREMAVAARESSRKLQALSSEERKKILLDVADALEANEELIKAENELDVAAAQEAGYEKSLVSRLTLKPGKIASLAASIR 375 (718)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHhCCchhHHHHHhccHHHHHHHHHHHH
Confidence 44557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCcccchh
Q psy11677 443 QIAESSHTNVGKFVK 457 (462)
Q Consensus 443 ~ia~l~dDPvg~v~~ 457 (462)
..|.+. +|+|++..
T Consensus 376 ~~a~~~-~~~g~~~~ 389 (718)
T PLN02418 376 QLADME-DPIGRVLK 389 (718)
T ss_pred HHhcCc-cccCcccc
Confidence 999998 79998764
|
|
| >TIGR00407 proA gamma-glutamyl phosphate reductase | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.6e-06 Score=85.46 Aligned_cols=86 Identities=34% Similarity=0.565 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHHhCCC
Q psy11677 370 TRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIAESSH 449 (462)
Q Consensus 370 Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia~l~d 449 (462)
|++|....+.++.++|.++|+++|+.|++++++|.++|.+|++.+++.|.+.++.++|.++..+++.+++.++..+...
T Consensus 1 a~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~a~~~E~Gk~~~~~~~l~~a~~ev~~~~~~~~~~a~~a- 79 (398)
T TIGR00407 1 AKQAANILAQLSTAEKNDALSKIADGLEAQAPAILAANAKDIAVAKENGLADALLDRLLLTEGRLKGIADGVKDVIELA- 79 (398)
T ss_pred ChhHHHHHHhCCHHHHHHHHHHHHHHHHhChHHHHHHhHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHhcCC-
Confidence 5778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccch
Q psy11677 450 TNVGKFV 456 (462)
Q Consensus 450 DPvg~v~ 456 (462)
+++|+++
T Consensus 80 ~~~g~~~ 86 (398)
T TIGR00407 80 DPVGKVI 86 (398)
T ss_pred CCCcccc
Confidence 7988755
|
The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif. |
| >PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=5e-06 Score=96.84 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=100.6
Q ss_pred CCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|-.-- .|-. +.. ..+-.+. ..+++.+.++ +++|+|+ +.+.+.+.|-
T Consensus 682 ~~P~GVv~~IsPwN-fPlai~~~~i~aALaaGNtVIlKPse~tpl~a-~~l~~ll~eAGlP~gvl~lv~G~g~~vg~~Lv 759 (1038)
T PRK11904 682 LHGRGVFVCISPWN-FPLAIFLGQVAAALAAGNTVIAKPAEQTPLIA-AEAVKLLHEAGIPKDVLQLLPGDGATVGAALT 759 (1038)
T ss_pred EecceEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEeeCCCcCHHHH-HHHHHHHHHhCcCcceEEEeeCCchHHHHHHh
Confidence 58999999994221 1421 111 3333454 5555777776 9999999 4666777777
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC-----CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ-----HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~-----~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
.+..||.|+..||...-+.|.+... .+|++.-..|.+.++||+|||+++|++-++.|+..+-|= +|.|...
T Consensus 760 ~~p~v~~V~FTGS~~~g~~I~~~~A~~~g~~~pvi~ElGGkNa~IV~~dAdld~Av~~iv~saF~~aGQ----~CsA~~r 835 (1038)
T PRK11904 760 ADPRIAGVAFTGSTETARIINRTLAARDGPIVPLIAETGGQNAMIVDSTALPEQVVDDVVTSAFRSAGQ----RCSALRV 835 (1038)
T ss_pred cCCCcCeEEEECCHHHHHHHHHHHhhccCCCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHHhCCCC----ccccCcE
Confidence 7788999999999999988865321 379999999999999999999999999999999885544 6777776
Q ss_pred hhhcccccc
Q psy11677 342 LADQGEMDV 350 (462)
Q Consensus 342 ~~~~~~~~~ 350 (462)
+..|+.|..
T Consensus 836 l~V~~si~d 844 (1038)
T PRK11904 836 LFVQEDIAD 844 (1038)
T ss_pred EEEeHHHHH
Confidence 666666543
|
|
| >cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17 | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.5e-06 Score=89.54 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=95.6
Q ss_pred CCCCc-eeeEEEEeCCCCcc----------------cccc-cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPV-EVLAEIWKNETLNT----------------TVPK-KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~Pl-GVi~~IyEsr~~Pn----------------v~~~-~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+ ||+++|-.-- .|- |.+- ..+-.|. ..|++.+.++ +.+++|. +.+.+.+.|
T Consensus 166 ~~~P~~GVv~~I~PwN-fP~~~~~~~~~palaGN~VVlKPs~~tp~~~-~~l~~~l~~aGlP~gvv~vv~g~~~~~g~~L 243 (522)
T cd07123 166 EYRPLEGFVYAVSPFN-FTAIGGNLAGAPALMGNVVLWKPSDTAVLSN-YLVYKILEEAGLPPGVINFVPGDGPVVGDTV 243 (522)
T ss_pred EEecCCceEEEECCcc-cHHHHHHHHHHHHHhCCEEEEECCCCCCHHH-HHHHHHHHHcCcCCCcEEEEecCchHHHHHH
Confidence 47898 9999993211 131 1111 4444455 5566777776 9999998 455677777
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--C------cceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--H------IPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAK 337 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~------iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~ 337 (462)
-.+..||.|.-.||..--+.|.+.+- - .||.....|+++++|++|||+++|++-++.++..+.|= .|.
T Consensus 244 ~~~~~v~~V~FTGS~~~G~~i~~~aa~~l~~~~~~~~v~lElGGkn~~IV~~dAdl~~Aa~~i~~~~f~~aGQ----~C~ 319 (522)
T cd07123 244 LASPHLAGLHFTGSTPTFKSLWKQIGENLDRYRTYPRIVGETGGKNFHLVHPSADVDSLVTATVRGAFEYQGQ----KCS 319 (522)
T ss_pred hcCCCcCEEEEECCHHHHHHHHHHHHhhcccccccCCEEEECCCCCeeEECCCCCHHHHHHHHHHHHHhcCCC----CCC
Confidence 67778999999999876666655431 1 28999999999999999999999999999999887664 344
Q ss_pred HHHHhhhcccc
Q psy11677 338 AIYNLADQGEM 348 (462)
Q Consensus 338 ~~~~~~~~~~~ 348 (462)
+...+..|..|
T Consensus 320 a~~rv~V~~~i 330 (522)
T cd07123 320 AASRAYVPESL 330 (522)
T ss_pred CCcEEEEcHHH
Confidence 44444444443
|
Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences. |
| >PLN02766 coniferyl-aldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.6e-05 Score=84.47 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=88.6
Q ss_pred CCCCceeeEEEEeCCCCcccc----------------cc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----------------PK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----------------~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
++.|+||+++|-.-- .|-.+ .. ..+-.|. ..+++.+.++ +++++|+ +...+.+.|
T Consensus 155 ~~~P~GVV~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~~aGlP~gvv~~v~g~~~~~~~~L 232 (501)
T PLN02766 155 LKEPIGVVGHIIPWN-FPSTMFFMKVAPALAAGCTMVVKPAEQTPLSA-LFYAHLAKLAGVPDGVINVVTGFGPTAGAAI 232 (501)
T ss_pred EeccceEEEEECCCC-ChHHHHHHHHHHHHHcCCEEEEeCCCCchHHH-HHHHHHHHhcCCCcCcEEEEecCchHHHHHH
Confidence 489999999994221 25321 11 4444555 5555777776 8999998 344455655
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|.=.||..-=+.|.+.+. ..||..-..|+..++|++|||+++|++-++.++...-|-
T Consensus 233 ~~~p~v~~V~FTGS~~~G~~i~~~aa~~~l~~~~lElGGknp~iV~~dADl~~Aa~~i~~g~f~n~GQ 300 (501)
T PLN02766 233 ASHMDVDKVSFTGSTEVGRKIMQAAATSNLKQVSLELGGKSPLLIFDDADVDMAVDLALLGIFYNKGE 300 (501)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHhhhcCCCeEEEECCCCCeEEECCCCCHHHHHHHHHHHHHhhcCC
Confidence 55556999999999998776666431 379877777999999999999999999999999887665
|
|
| >PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.4e-05 Score=86.10 Aligned_cols=134 Identities=18% Similarity=0.129 Sum_probs=93.5
Q ss_pred CCCCceeeEEEEeCCCCcccc----------------cc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTV----------------PK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~----------------~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-.+ .. ..+-.+. ..+.+.+.++ +.+++|. +.+.+.+.|
T Consensus 143 ~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~~aglP~gvv~vv~g~~~~~~~~l 220 (482)
T PRK11241 143 IKQPIGVTAAITPWN-FPAAMITRKAGPALAAGCTMVLKPASQTPFSA-LALAELAIRAGIPAGVFNVVTGSAGAVGGEL 220 (482)
T ss_pred EEeeceEEEEECCCc-ChHHHHHHHHHHHHHhCCEEEEECCCCChHHH-HHHHHHHHHcCCCcccEEEEecCCchhHHHH
Confidence 478999999995322 24311 11 3344454 4555777776 8999998 334454544
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..||.|.=.||..-=+.|.+.+. ..||..-..|+..++|++|||++.|++-++.++..+-|= .|.+...+.
T Consensus 221 ~~~~~v~~v~FTGS~~~G~~i~~~aa~~l~~~~lElGGknp~IV~~dADld~aa~~i~~~~f~~aGQ----~C~a~~ri~ 296 (482)
T PRK11241 221 TSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQ----TCVCANRLY 296 (482)
T ss_pred hcCCCCCEEEEECcHHHHHHHHHHHHhcCCcEEEECCCCCeEEEcCCCCHHHHHHHHHHHHHhcCCC----CCccCeEEE
Confidence 44667999999999997777665531 368777777999999999999999999999999986665 455544444
Q ss_pred hcccc
Q psy11677 344 DQGEM 348 (462)
Q Consensus 344 ~~~~~ 348 (462)
.++.|
T Consensus 297 V~~~i 301 (482)
T PRK11241 297 VQDGV 301 (482)
T ss_pred EeHHH
Confidence 44443
|
|
| >PRK00197 proA gamma-glutamyl phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=77.11 Aligned_cols=92 Identities=32% Similarity=0.525 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
-..++.|++|....+.++.++|.++|+++++.|++++++|.+++.+|+.+.++.|+++++.+++..+...++.+++.++.
T Consensus 7 ~~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~g~~~~~g~~~~~~~~~~~~~~ev~~~~~~~~~ 86 (417)
T PRK00197 7 EELGRRAKAASRKLAQLSTAQKNRALLAIADALEANAAEILAANAKDLAAARANGLSAAMLDRLLLTEARIEGIAEGLRQ 86 (417)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCcccch
Q psy11677 444 IAESSHTNVGKFV 456 (462)
Q Consensus 444 ia~l~dDPvg~v~ 456 (462)
.+.++ +++|+..
T Consensus 87 ~a~~~-~~~g~~~ 98 (417)
T PRK00197 87 VAALP-DPVGEVL 98 (417)
T ss_pred HhhcC-CCccccc
Confidence 99998 6887764
|
|
| >cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00023 Score=75.19 Aligned_cols=90 Identities=33% Similarity=0.607 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
+++.|+.|.+..+.++.++|.++|.++++.|.+++++|..++.+|+.+.++.|.+.++.++|......++.+++.++..+
T Consensus 3 ~~~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~gk~~e~G~~~a~~~~l~~~~~ev~~~~~~~~~~a 82 (406)
T cd07079 3 LAKRAKAASRALATLSTEQKNAALLAIADALEANRDEILEANAKDLAAAREAGLSEALLDRLLLTPERIEAMAEGLRQVA 82 (406)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhchHHHHHHhhhhHHHHHHcCCCHHHHhHhcCCHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred hCCCCCcccch
Q psy11677 446 ESSHTNVGKFV 456 (462)
Q Consensus 446 ~l~dDPvg~v~ 456 (462)
.++ +++|++.
T Consensus 83 ~~~-~~~g~~~ 92 (406)
T cd07079 83 ALP-DPVGEVL 92 (406)
T ss_pred hcC-CCCcccc
Confidence 888 6877654
|
Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1). |
| >TIGR03374 ABALDH 1-pyrroline dehydrogenase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=78.48 Aligned_cols=120 Identities=16% Similarity=0.096 Sum_probs=86.3
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c-cc-cccccchHHHHHhhcCCC---CeEEeecC-HHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V-PK-KHAKTSQCKYFTKMLPRY---PLHSQVST-REEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~-~~-~ea~~sn~~~l~~al~~~---~~v~~v~~-r~~~~~ll~ 266 (462)
.+.|+||+++|-..- .|-. + +- ..+-.|. ..+++.+.+. +.+++|+. -+.+.+.|-
T Consensus 134 ~~~P~GVV~~I~PwN-~P~~~~~~~~~~ALaaGN~VV~KPs~~tp~~~-~~l~~l~~~~lP~gv~~~v~g~~~~~~~~L~ 211 (472)
T TIGR03374 134 RRDPLGVVASIAPWN-YPLMMAAWKLAPALAAGNCVVLKPSEITPLTA-LKLAELAKDIFPAGVVNILFGRGKTVGDPLT 211 (472)
T ss_pred EEecceEEEEECCCC-chHHHHHHHHHHHHhcCCEEEecCCCCCCHHH-HHHHHHHHHhCCcCeEEEEecCchhHHHHHh
Confidence 489999999995322 2421 1 11 3344454 5555555444 99999983 444555555
Q ss_pred CCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
.+..||.|-=.||..--+.|.+.+. -.||..=..|+..++|++|||+++|++-++.++..+-|-
T Consensus 212 ~~~~v~~V~fTGS~~~G~~i~~~aa~~~~~~~lElGGk~p~iV~~dadl~~aa~~i~~~~~~~~GQ 277 (472)
T TIGR03374 212 GHEKVRMVSLTGSIATGEHILSHTAPSIKRTHMELGGKAPVIVFDDADIDAVVEGVRTFGFYNAGQ 277 (472)
T ss_pred cCCCcCEEEEECCHHHHHHHHHHHhhcccceEEecCCCCeeEECCCCCHHHHHHHHHHHHHhhcCC
Confidence 5666999999999999988876542 366665555999999999999999999999998887665
|
Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family. |
| >PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00025 Score=78.49 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=85.7
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|-.-- .|-. +.. ..+-.|. ..+++.+.++ +++++|. +.+.... |
T Consensus 246 ~reP~GVV~~I~PwN-fPl~l~~~~iapALaAGNtVVlKPSe~tp~ta-~~l~~l~~eAGlP~GvvnvV~G~~~~~~~-L 322 (604)
T PLN02419 246 IREPLGVCAGICPFN-FPAMIPLWMFPVAVTCGNTFILKPSEKDPGAS-VILAELAMEAGLPDGVLNIVHGTNDTVNA-I 322 (604)
T ss_pred EecCccEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEeCCCCCcHHH-HHHHHHHHHhCcCcceEEEEeCChHHHHH-H
Confidence 378999999993111 1421 111 3334555 5566777776 9999998 4554444 4
Q ss_pred cCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|-=.||..-=+.|.+.+ +..||.--..|...++|++|||++.|++-++.++..+-|=
T Consensus 323 ~~~~~Vd~V~FTGSt~vG~~I~~~Aa~~lk~v~LELGGknp~IV~~DADld~Aa~~iv~g~f~naGQ 389 (604)
T PLN02419 323 CDDEDIRAVSFVGSNTAGMHIYARAAAKGKRIQSNMGAKNHGLVLPDANIDATLNALLAAGFGAAGQ 389 (604)
T ss_pred HhCCCCCEEEEeCChHHHHHHHHHHhccCCcEEEecCCCCeEEEcCCCCHHHHHHHHHHHHHhhCCC
Confidence 4566799999999888777666543 1478887778888999999999999999999999887665
|
|
| >COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0003 Score=75.78 Aligned_cols=181 Identities=18% Similarity=0.135 Sum_probs=111.9
Q ss_pred CCCCceeeEEEEeCCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|..-- .|-.+.- +.+-.|. ..|++.+.++ +.+++|+. ...+.+-|
T Consensus 130 ~~~P~GVv~~I~PwN-fP~~~~~~k~apALaaGntVV~KPse~tp~sa-~~l~~~~~~aglP~Gv~nvv~g~~~~~g~~l 207 (472)
T COG1012 130 RREPLGVVGAITPWN-FPLALAAWKLAPALAAGNTVVLKPSEQTPLSA-LALAELAAEAGLPAGVLNVVTGGGAEVGDAL 207 (472)
T ss_pred EeecceEEEEECCCC-CHHHHHHhhHHHHHHcCCEEEEECcccCcHHH-HHHHHHHHHhCCCCCeEEEEeCCCchHHHHH
Confidence 499999999996433 3542111 3334444 5555555444 88999983 23355555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLA 343 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~ 343 (462)
-.+..||.|-=.||..-=+.|.+.+ +..||..=..|+-.++|.+|||++.|++-++.++....|= .|.+..-+.
T Consensus 208 ~~~p~v~~i~FTGSt~~G~~i~~~Aa~~~k~~~lELGGk~p~IV~~dAdl~~Av~~~~~g~f~n~GQ----~C~a~~R~~ 283 (472)
T COG1012 208 VAHPDVDAISFTGSTAVGRAIAAAAAANLKPVTLELGGKSPAIVLEDADLDAAVDAAVFGAFFNAGQ----RCTAASRLI 283 (472)
T ss_pred hcCCCCCEEEEECChHHHHHHHHHHhhcCCcEEEECCCCCCeEECCCCCHHHHHHHHHHHHHhCCCC----CccCCeEEE
Confidence 5566799999999655555554444 3689999999999999999999999999999999998777 333333333
Q ss_pred hcccccccChhhHHHHHHhHHHHHHHH--HHHHHHHh-cCCHHHHHHHHHHHHHHHHhc
Q psy11677 344 DQGEMDVSGLPCLLLFIRLGSLFISGT--RSGSRVLQ-GLNPEDRAKAIYNLADLLISK 399 (462)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~A--r~As~~L~-~ls~~~rn~aL~~iA~~L~~~ 399 (462)
.+..| +.....+|.+. ...++-- ..-...+. ..+.++.++++..+.+...+.
T Consensus 284 V~~~v---~d~f~~~l~~~-~~~l~~Gd~~d~~t~~Gpli~~~~~~~v~~~i~~a~~~G 338 (472)
T COG1012 284 VHESV---YDEFVERLVAR-AASLKVGDPLDPSTDLGPLISEEQLDRVEGYIEDAVAEG 338 (472)
T ss_pred Eehhh---HHHHHHHHHHH-HhcCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 33333 33333333322 1111000 11112232 234556777777777766653
|
|
| >KOG2456|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.002 Score=67.38 Aligned_cols=162 Identities=19% Similarity=0.192 Sum_probs=113.6
Q ss_pred HHHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcc-------ccccccccCCC--CCCCCceeeEEE
Q psy11677 165 NSATWALDRGVSVVICNGMQKEA----------------IKQIVAGRK-------IGTFFTDASAQ--SGGTPVEVLAEI 219 (462)
Q Consensus 165 ~iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~-------i~t~~a~~~d~--~~~~PlGVi~~I 219 (462)
.+...++++.++|.+|=.+|+-+ +.-+.+-+. +-+.+..+.|. ....|.||+.+|
T Consensus 32 ~L~r~i~e~e~~i~~Al~~DL~k~~~es~~~Ev~~~~~~i~~~l~~L~~wv~~~~v~~~~~t~~dk~~I~~~p~GvVLiI 111 (477)
T KOG2456|consen 32 ALYRMIQENEKEIIEALAADLHKPELESYLNEVGYVLNEIRYALENLPEWVKPEPVKKSFLTFLDKAYIEKEPLGVVLII 111 (477)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhHHhccccccCcccccccCceeEEecCCceEEEE
Confidence 37788999999999999888865 222222222 00111111111 248999999999
Q ss_pred E-eCCCCccc-ccc---------------cccccchHHHHH-hhcCCC---CeEEeec-CHHHHHHHhcCCCCccEEeec
Q psy11677 220 W-KNETLNTT-VPK---------------KHAKTSQCKYFT-KMLPRY---PLHSQVS-TREEISDLLSMEKHIDLIIPR 277 (462)
Q Consensus 220 y-Esr~~Pnv-~~~---------------~ea~~sn~~~l~-~al~~~---~~v~~v~-~r~~~~~ll~~~~~iDliIPr 277 (462)
- +.. |-. +.+ +.-+.-|+.++. +-|.++ ++++.|+ .-.++.+||++ ..|.|.=.
T Consensus 112 ~~wNy--P~~L~l~PligAiAAGN~VVlKPSEls~n~a~~lakllp~Yld~~~~~VV~Ggv~ETt~LL~~--rfD~IfyT 187 (477)
T KOG2456|consen 112 GPWNY--PLNLTLVPLIGAIAAGNAVVLKPSELSPNTAKLLAKLLPQYLDQDLIRVVNGGVPETTELLKQ--RFDHIFYT 187 (477)
T ss_pred ccCCC--cceeehhhhhhhhhcCCEEEechhhcChhHHHHHHHHHHHhcCcceEEEecCCCchHHHHHHh--hccEEEec
Confidence 3 122 522 222 222333434444 888887 9999999 68899999988 48999999
Q ss_pred CChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 278 GSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 278 G~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
||+..=+-|+..+. -.||----.|-|.+|||+++|++-|.+-|.=+|--..|=
T Consensus 188 Gsp~VgkIim~aAaKhLTPvtLELGGKsP~~vd~~~d~~ia~~RI~~gk~~N~GQ 242 (477)
T KOG2456|consen 188 GSPRVGKIIMAAAAKHLTPVTLELGGKSPCYVDKNCDLKIAARRIAWGKWMNSGQ 242 (477)
T ss_pred CCchHHHHHHHHHHhcCCcEEEEcCCCCCeeecCCcCHHHHHHHHHHHhhccCCC
Confidence 99988777655432 489999999999999999999999999999888754443
|
|
| >TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=71.65 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=85.7
Q ss_pred CCCCc-eeeEEEEeCCCCcc----------------cccc-cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPV-EVLAEIWKNETLNT----------------TVPK-KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~Pl-GVi~~IyEsr~~Pn----------------v~~~-~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+ ||+++|-.-- .|- |.+- ..+-.|. ..|++.+.++ +.+++|+. -..+.+.|
T Consensus 166 ~~~P~~GVv~~I~PwN-~P~~~~~~~~a~ALaGN~VVlKPs~~tp~~~-~~l~~~~~~aGlP~gvv~vv~g~~~~~g~~L 243 (533)
T TIGR01236 166 DYRPLEGFVYAISPFN-FTAIAGNLPGAPALMGNTVIWKPSITATLSN-YLTMRILEEAGLPPGVINFVPGDGFAVSDVV 243 (533)
T ss_pred EEecCCCEEEEEeCCc-hHHHHHHHHHHHHHhCCeEEEECCCcCCHHH-HHHHHHHHhcCCCCCcEEEEecCcHHHHHHH
Confidence 47899 9999994211 131 1111 3344555 5566777776 89999983 33455555
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCC--Cc------ceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQ--HI------PVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~--~i------Pvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|.=.||..--+.|.+.+. -. +|.....|+..++|++|||+++|++-++.++...-|=
T Consensus 244 v~~p~v~~V~FTGS~~~G~~i~~~aa~~l~~~~~~~~v~lElGGknp~IV~~dADl~~Aa~~i~~~~f~~~GQ 316 (533)
T TIGR01236 244 LADPRLAGIHFTGSTATFKHLWKWVASNLDRYHNFPRIVGETGGKDFHVVHPSADIDHAVTATIRGAFEYQGQ 316 (533)
T ss_pred hcCCCcCEEEEECCHHHHHHHHHHHHhhccccccCCcEEEEcCCCCeEEECCCCCHHHHHHHHHHHHHhhCCC
Confidence 56667999999999887777766431 12 3888889999999999999999999999998875554
|
This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate. |
| >cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0089 Score=62.81 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHHhCC
Q psy11677 369 GTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIAESS 448 (462)
Q Consensus 369 ~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia~l~ 448 (462)
.|+.|.+..+.++.++|.++|+++++.|+++++++.+++.+|..+..+ .....+++|+.+...+++.+++.++..+...
T Consensus 2 ~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~-~~~~~~~~~~~~~~~ev~~~~~~~~~~a~~~ 80 (397)
T cd07077 2 SAKNAQRTLAVNHDEQRDLIINAIANALYDTRQRLASEAVSERGAYIR-SLIANWIAMMGCSESKLYKNIDTERGITASV 80 (397)
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccHHHHHHhCCcHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999999999988754 4677999999999999999999999998644
|
The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group. |
| >cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0035 Score=67.99 Aligned_cols=131 Identities=14% Similarity=0.088 Sum_probs=95.7
Q ss_pred CCCCceeeEEEEeCCCCccc----------------c-cccc-cccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------V-PKKH-AKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~-~~~e-a~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|-.-- .|-. + +-+| +-.|. ..|++.+.++ +.+++|+. .+....|+
T Consensus 139 ~r~P~GVV~~I~PwN-fP~~l~~~~ia~ALaaGN~VVlKPSe~tp~~~-~~l~~~~~~aGlP~gv~~vv~G~~~~~~~l~ 216 (489)
T cd07126 139 YRWPYGPVAIITPFN-FPLEIPALQLMGALFMGNKPLLKVDSKVSVVM-EQFLRLLHLCGMPATDVDLIHSDGPTMNKIL 216 (489)
T ss_pred EEecceEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCCCCHHH-HHHHHHHHHhCcCcCcEEEEeCCchhHHHHh
Confidence 478999999994211 1421 1 1133 44555 5566666665 89999984 34466676
Q ss_pred cCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCC-CHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDA-DIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~a-d~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
. +..+|.|-=.||..-=+.|...+ +-++.-...|..+++|.+|| |++.|++.+..++..+-|= .|-+..-+..
T Consensus 217 ~-~~~v~~V~FTGS~~vGr~i~~~~-g~k~~lElgg~~~~IV~~Da~dld~a~~~~~~g~f~naGQ----~C~a~~rv~V 290 (489)
T cd07126 217 L-EANPRMTLFTGSSKVAERLALEL-HGKVKLEDAGFDWKILGPDVSDVDYVAWQCDQDAYACSGQ----KCSAQSILFA 290 (489)
T ss_pred c-CCCCCEEEEECCHHHHHHHHHHh-CCCEEeecCCCCceEECCCcccHHHHHHHHHHHHHhcCCC----cCCCCceEEE
Confidence 5 45699999999999999998887 47887788899999999999 9999999999998875443 5555555555
Q ss_pred ccc
Q psy11677 345 QGE 347 (462)
Q Consensus 345 ~~~ 347 (462)
|+.
T Consensus 291 ~~~ 293 (489)
T cd07126 291 HEN 293 (489)
T ss_pred eCc
Confidence 555
|
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences. |
| >TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.006 Score=66.11 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHH-hcHHHHHHHHHCCCChhhhhhcC---CCHHHHHHHH
Q psy11677 363 GSLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLD-ANSKDLSDATKNGVAKPLLSRLS---LTPSKLKSLS 438 (462)
Q Consensus 363 ~~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~-AN~~Dl~~a~~~gl~~~l~dRL~---L~~~ri~~m~ 438 (462)
-...+++||.|.+.++.++.++|+++|+++|+.|.+++++|.+ +| ++.|.+..+ +|+. +...++..++
T Consensus 10 v~~av~~A~~A~~~w~~~s~~~R~~iL~~~a~~l~~~~~ela~~~~-------~E~Gk~~~~-~~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02518 10 VRNLIRSAKVAQKKLANMTQEQIDKIVKAIVDAAYENAVKLAKMAN-------EETGFGKWE-DKVIKNVFAATIVYDSI 81 (488)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHhCCChHH-HHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999886 55 667888777 8875 5667777777
Q ss_pred HHHHHH
Q psy11677 439 TGLKQI 444 (462)
Q Consensus 439 ~~l~~i 444 (462)
.+++.+
T Consensus 82 ~~~~~~ 87 (488)
T TIGR02518 82 KDMKTI 87 (488)
T ss_pred hhCccc
Confidence 766544
|
|
| >cd07080 ALDH_Acyl-CoA-Red_LuxC Acyl-CoA reductase LuxC | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.17 Score=53.98 Aligned_cols=117 Identities=11% Similarity=0.116 Sum_probs=84.8
Q ss_pred CCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHHhhcCCC-------CeEEee--c-C-HHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY-------PLHSQV--S-T-REE 260 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~-------~~v~~v--~-~-r~~ 260 (462)
.+.|+||++.|...- .|-+... +..-.+. ..|.+.+.++ +.++++ + . .+.
T Consensus 109 ~~~P~Gvv~~I~p~N-~P~l~~~s~~~aLlaGN~~ilKpS~~~p~~~-~~l~~~l~~~~p~~~~~~~~~vv~~~g~~~~~ 186 (422)
T cd07080 109 RAQPRGLVVHIIAGN-VPLLPVWSIVRGLLVKNVNLLKMSSSDPLTA-TALLRSLADVDPNHPLTDSISVVYWPGGDAEL 186 (422)
T ss_pred EEcCCceEEEEccCC-ccccHHHHHHHHHHhcCceEEECCCccchHH-HHHHHHHHhcCCCCcccceEEEEEecCCchHH
Confidence 478999999996433 3542111 4444555 5666444443 556776 4 2 334
Q ss_pred HHHHhcCCCCccEEeecCChhHHHHHHhhCC-CcceeeeccceeEEEEccCC----CHHHHHHHHHcccCCCCCC
Q psy11677 261 ISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ-HIPVLGHAEGICHVYVDKDA----DIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 261 ~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~-~iPvi~~~~G~ch~yvd~~a----d~~~a~~i~~nak~~~~~~ 330 (462)
...|++.. |.++=.||..-++.|.+.+. +..+|++|..+..+|++.+| |++++++-+.++++.+-+-
T Consensus 187 ~~~l~~~~---D~i~~~Gs~~~~~~i~~~a~~~~~~Le~Ggk~s~~vi~~~a~~~~dl~~aa~~~a~~~~~~~gQ 258 (422)
T cd07080 187 EERILASA---DAVVAWGGEEAVKAIRSLLPPGCRLIDFGPKYSFAVIDREALESEKLAEVADALAEDICRYDQQ 258 (422)
T ss_pred HHHHHHhC---CEEEEeCCHHHHHHHHHhCCCCCeeeecCCceeEEEecHHhhccccHHHHHHHHHHHHHHHhhh
Confidence 55566554 99999999999999997652 45689999999999999999 9999999999998886655
|
Acyl-CoA reductase, LuxC, (EC=1.2.1.50) is the fatty acid reductase enzyme responsible for synthesis of the aldehyde substrate for the luminescent reaction catalyzed by luciferase. The fatty acid reductase, a luminescence-specific, multienzyme complex (LuxCDE), reduces myristic acid to generate the long chain fatty aldehyde required for the luciferase-catalyzed reaction resulting in the emission of blue-green light. Mutational studies of conserved cysteines of LuxC revealed that the cysteine which aligns with the catalytic cysteine conserved throughout the ALDH superfamily is the LuxC acylation site. This CD is composed of mainly bacterial sequences but also includes a few archaeal sequences similar to the Methanospirillum hungateiacyl acyl-CoA reductase RfbN. |
| >cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.066 Score=57.18 Aligned_cols=80 Identities=20% Similarity=0.149 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
...+.|+.|....+.++.++|.++|+++++.|++++++|.+++.+|..+. +.++...++.....+++.+++.++++
T Consensus 9 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~----~~e~~~~ev~~~~~~~~~~a~~~~~~ 84 (436)
T cd07135 9 SIHSRLRATFRSGKTKDLEYRLWQLKQLYWAVKDNEEAIVEALKKDLGRP----PFETLLTEVSGVKNDILHMLKNLKKW 84 (436)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 45667899999999999999999999999999999999999999997544 23455678888889999999999988
Q ss_pred HhCC
Q psy11677 445 AESS 448 (462)
Q Consensus 445 a~l~ 448 (462)
+...
T Consensus 85 ~~~~ 88 (436)
T cd07135 85 AKDE 88 (436)
T ss_pred hCCc
Confidence 7554
|
Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD. |
| >TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.034 Score=62.63 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=83.7
Q ss_pred CCCCc-eeeEEEEeCCCCcc----------------cc-cc-cccccchHHHHHhhcCCC-----CeEEeecCHHHHHHH
Q psy11677 209 GGTPV-EVLAEIWKNETLNT----------------TV-PK-KHAKTSQCKYFTKMLPRY-----PLHSQVSTREEISDL 264 (462)
Q Consensus 209 ~~~Pl-GVi~~IyEsr~~Pn----------------v~-~~-~ea~~sn~~~l~~al~~~-----~~v~~v~~r~~~~~l 264 (462)
.+.|+ ||+++|-.-- .|- |+ +- ..+-.|. ..+.+.+.++ +.+++|... ..++
T Consensus 140 ~~~P~~Gvv~~I~pwN-~P~~~~~~~~~~ALaaGN~Vv~KPs~~tp~~~-~~l~~~~~~aG~lP~gv~~~v~g~--~~~~ 215 (663)
T TIGR02278 140 ILTPKGGVAVQINAFN-FPVWGLLEKFAPAFLAGVPTLAKPATPTAYVA-EALVRTMVESGLLPEGSLQLICGS--AGDL 215 (663)
T ss_pred EEEeCCceEEEEcCCc-hHHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHhCCCCCCcEEEEeCC--hHHH
Confidence 36897 9999994211 141 11 11 3334555 5555665553 789999842 3334
Q ss_pred hcCCCCccEEeecCChhHHHHHHhh----CCCcceeeeccceeEEEEccCCC-----HHHHHHHHHcccCCCCCC
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQK----SQHIPVLGHAEGICHVYVDKDAD-----IRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~----s~~iPvi~~~~G~ch~yvd~~ad-----~~~a~~i~~nak~~~~~~ 330 (462)
+.....+|.|.=.||..-=+.|.+. .+.+||.-=..|...++|.+||| ++.|++.++.++..+-|=
T Consensus 216 ~~~~~~~~~V~FTGS~~~G~~i~~~aaaa~~~~~~~lELGGk~p~IV~~dAd~~~~dl~~aa~~i~~~~f~~sGQ 290 (663)
T TIGR02278 216 LDHLDHRDVVAFTGSAATADRLRAHPNVLERGIRFNAEADSLNAAILGEDATPDEPEFDLFAQEIVRELTIKAGQ 290 (663)
T ss_pred HhcCCCCCEEEEECCHHHHHHHHHhHhHHhcCceEEEEcCCCCeEEEcCCCCccchhHHHHHHHHHHHHHhcCCC
Confidence 4443468999999999988888774 13589999999999999999999 999999999988775554
|
This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species. |
| >cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.047 Score=59.68 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=89.2
Q ss_pred CCCC-ceeeEEEEeCCCCcc----------------cccc--cccccchHHHHHhhcCCC-----CeEEeecC-HHHHHH
Q psy11677 209 GGTP-VEVLAEIWKNETLNT----------------TVPK--KHAKTSQCKYFTKMLPRY-----PLHSQVST-REEISD 263 (462)
Q Consensus 209 ~~~P-lGVi~~IyEsr~~Pn----------------v~~~--~ea~~sn~~~l~~al~~~-----~~v~~v~~-r~~~~~ 263 (462)
++.| +||+++|-.-- .|- |+.. ..+-.+. ..|++.+.++ +.+++|.. -..+.+
T Consensus 140 ~~~P~~GVv~~I~pwN-~P~~~~~~~~~~ALaaGN~VVlKPs~~tp~~~-~~l~~~~~eaG~lP~gv~~~v~g~~~~~~~ 217 (513)
T cd07128 140 ILTPRRGVAVHINAFN-FPVWGMLEKFAPALLAGVPVIVKPATATAYLT-EAVVKDIVESGLLPEGALQLICGSVGDLLD 217 (513)
T ss_pred EEEecccEEEEECCcc-cHHHHHHHHHHHHHHcCCEEEEECCCCCCHHH-HHHHHHHHHhCCCCCCcEEEecCChHHHhc
Confidence 3689 59999984211 131 1111 3333455 5555555553 78999984 322333
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhC----CCcceeeeccceeEEEEccCCC-----HHHHHHHHHcccCCCCCCCCch
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKS----QHIPVLGHAEGICHVYVDKDAD-----IRKAIKIARSGSRVLQGLNPED 334 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s----~~iPvi~~~~G~ch~yvd~~ad-----~~~a~~i~~nak~~~~~~~~~~ 334 (462)
-| ..+|.|.=.||..--+.|.+++ +.+||..=..|...++|.+||| +++|++-++.++...-|=
T Consensus 218 ~l---~~~d~v~fTGS~~~G~~i~~~a~~a~~~~~~~lElGGknp~IV~~DAd~~~~dld~aa~~iv~~~f~~aGQ---- 290 (513)
T cd07128 218 HL---GEQDVVAFTGSAATAAKLRAHPNIVARSIRFNAEADSLNAAILGPDATPGTPEFDLFVKEVAREMTVKAGQ---- 290 (513)
T ss_pred cc---CCCCEEEEECCHHHHHHHHHHhhhhccCceEEEeccCcCcEEECCCCCcchhhHHHHHHHHHHHHHHhcCC----
Confidence 22 3589999999999988888862 3589998899999999999999 999999999988765443
Q ss_pred hHHHHHHhhhcccc
Q psy11677 335 RAKAIYNLADQGEM 348 (462)
Q Consensus 335 ~~~~~~~~~~~~~~ 348 (462)
.|.+..-+..|..|
T Consensus 291 ~C~a~~rv~V~~~i 304 (513)
T cd07128 291 KCTAIRRAFVPEAR 304 (513)
T ss_pred cccCCceEEEehHH
Confidence 55555555555554
|
The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH. |
| >cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.061 Score=57.51 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..++.|++|.+..+.++.++|.++|+++++.|++++++|.+++.+|+.+. +.++...++....+.++..++.++++
T Consensus 2 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~----~~~a~~~ev~~~~~~~~~~~~~~~~~ 77 (443)
T cd07132 2 EAVRRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEALAKDLRKP----KFEAVLSEILLVKNEIKYAISNLPEW 77 (443)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999997543 33455667777778888888888887
Q ss_pred Hh
Q psy11677 445 AE 446 (462)
Q Consensus 445 a~ 446 (462)
+.
T Consensus 78 ~~ 79 (443)
T cd07132 78 MK 79 (443)
T ss_pred hC
Confidence 63
|
NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes. |
| >PRK11903 aldehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.088 Score=57.65 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=67.5
Q ss_pred CeEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhC----CCcceeeeccceeEEEEccCCC-----HHHHHHH
Q psy11677 250 PLHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS----QHIPVLGHAEGICHVYVDKDAD-----IRKAIKI 319 (462)
Q Consensus 250 ~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s----~~iPvi~~~~G~ch~yvd~~ad-----~~~a~~i 319 (462)
+.+++|.. .+.+.+.| ..+|.|.=.||..--+.|.+.+ +.+||.-=-.|...++|.+||| +++|++-
T Consensus 207 gv~~~v~g~~~~~~~~l---~~v~~v~fTGS~~~G~~v~~~aa~~~~~~~~~lElGGknp~IV~~dAd~~~~~~~~aa~~ 283 (521)
T PRK11903 207 GALSVVCGSSAGLLDHL---QPFDVVSFTGSAETAAVLRSHPAVVQRSVRVNVEADSLNSALLGPDAAPGSEAFDLFVKE 283 (521)
T ss_pred CceEEeeCCchHHHhcc---cCCCEEEEECCHHHHHHHHhhhhhhccCceeEeeccccCceEEccCCcccchhHHHHHHH
Confidence 78999983 44444433 5699999999999888887742 2579888888999999999999 5999999
Q ss_pred HHcccCCCCCCCCchhHHHHHHhhhccc
Q psy11677 320 ARSGSRVLQGLNPEDRAKAIYNLADQGE 347 (462)
Q Consensus 320 ~~nak~~~~~~~~~~~~~~~~~~~~~~~ 347 (462)
++.++..+-|= .|-+...+..+..
T Consensus 284 i~~~~f~~sGQ----~C~a~~rv~V~~~ 307 (521)
T PRK11903 284 VVREMTVKSGQ----KCTAIRRIFVPEA 307 (521)
T ss_pred HHHHHHhccCC----CccCCeEEEEehh
Confidence 99888875554 3444444444433
|
|
| >cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.75 Score=49.40 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhh-cCCCHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSR-LSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dR-L~L~~~ri~~m~~~l~~ 443 (462)
.++.|++|....+.++.++|.++|+++++.|+++++++.++- +++.|.+.....+ +....++++.++..++.
T Consensus 4 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~------~~e~Gkp~~~~~~ev~~~~~~l~~~a~~~~~ 76 (454)
T cd07129 4 AAAAAAAAFESYRALSPARRAAFLEAIADEIEALGDELVARA------HAETGLPEARLQGELGRTTGQLRLFADLVRE 76 (454)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHcCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999988662 3445655544432 55566677777766654
|
Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids. |
| >PTZ00381 aldehyde dehydrogenase family protein; Provisional | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.4 Score=52.19 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..++.||++.+....++.++|.+.|+++++.|++++++|.+++.+|+-+.. .++...-+...-+.++.+++.+++.
T Consensus 11 ~av~~a~~a~~~~~~~~~~~R~~~L~~l~~~l~~~~~~i~~a~~~d~Gk~~----~ea~~~Ev~~~~~~i~~~~~~~~~~ 86 (493)
T PTZ00381 11 PIVKKLKESFLTGKTRPLEFRKQQLRNLLRMLEENKQEFSEAVHKDLGRHP----FETKMTEVLLTVAEIEHLLKHLDEY 86 (493)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999985432 2444433666777888888888877
Q ss_pred Hh
Q psy11677 445 AE 446 (462)
Q Consensus 445 a~ 446 (462)
..
T Consensus 87 ~~ 88 (493)
T PTZ00381 87 LK 88 (493)
T ss_pred hC
Confidence 54
|
|
| >cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.32 Score=51.95 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
.++.|++|....+.++.++|.++|+++++.|++++++|.+++.+|+-+. +.+++.+.+....+.++..+..+++
T Consensus 4 a~~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~----~~~a~~~ev~~~~~~~~~~~~~~~~ 77 (432)
T cd07137 4 LVRELRETFRSGRTRSAEWRKSQLKGLLRLVDENEDDIFAALRQDLGKP----SAESFRDEVSVLVSSCKLAIKELKK 77 (432)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999999999986443 2344455555555566655555444
|
Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress. |
| >TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.66 Score=50.09 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCC--HHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRV-LQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT--PSKLKSLSTGL 441 (462)
Q Consensus 365 ~~~~~Ar~As~~-L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~--~~ri~~m~~~l 441 (462)
..++.|++|... .++++.++|.++|+++++.|++++++|..++..|. |.+.....++.++ -++++..+..+
T Consensus 40 ~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~------Gk~~~~~~~~ev~~~~~~~~~~~~~~ 113 (481)
T TIGR03216 40 AAVAAARAALKGPWGKMTVAERADLLYAVADEIERRFDDFLAAEVADT------GKPRSLASHLDIPRGAANFRVFADVV 113 (481)
T ss_pred HHHHHHHHHhHhhHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc------CCcHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456678888886 89999999999999999999999999999988876 4444444333322 34555555555
Q ss_pred HHH
Q psy11677 442 KQI 444 (462)
Q Consensus 442 ~~i 444 (462)
+++
T Consensus 114 ~~~ 116 (481)
T TIGR03216 114 KNA 116 (481)
T ss_pred HHh
Confidence 543
|
Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation. |
| >PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.39 Score=54.23 Aligned_cols=131 Identities=15% Similarity=0.165 Sum_probs=88.3
Q ss_pred CCCc-eeeEEEEeCCCCcc----------------c-ccc-cccccchHHHHHhhcCCC-----CeEEeecCHHHHHHHh
Q psy11677 210 GTPV-EVLAEIWKNETLNT----------------T-VPK-KHAKTSQCKYFTKMLPRY-----PLHSQVSTREEISDLL 265 (462)
Q Consensus 210 ~~Pl-GVi~~IyEsr~~Pn----------------v-~~~-~ea~~sn~~~l~~al~~~-----~~v~~v~~r~~~~~ll 265 (462)
..|+ ||+++|-.-- .|- | .+- ..+-.|. ..|++.+.++ +.+++|... ..+++
T Consensus 145 ~~p~~GVv~~I~PwN-fP~~~~~~~i~pALaaGN~VV~KPse~tp~~a-~~l~~~~~eaG~~P~gv~~vv~g~--~~~~~ 220 (675)
T PRK11563 145 LTPLEGVAVHINAFN-FPVWGMLEKLAPAFLAGVPAIVKPATATAYLT-EAVVRLIVESGLLPEGALQLICGS--AGDLL 220 (675)
T ss_pred EeecCceEEEECCCc-hHHHHHHHHHHHHHHcCCeEEEECCCCCcHHH-HHHHHHHHHcCCCCCCcEEEeeCC--HHHHh
Confidence 6786 9999984111 132 1 111 3334555 5556555553 789999842 12344
Q ss_pred cCCCCccEEeecCChhHHHHHHhh----CCCcceeeeccceeEEEEccCCC-----HHHHHHHHHcccCCCCCCCCchhH
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQK----SQHIPVLGHAEGICHVYVDKDAD-----IRKAIKIARSGSRVLQGLNPEDRA 336 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~----s~~iPvi~~~~G~ch~yvd~~ad-----~~~a~~i~~nak~~~~~~~~~~~~ 336 (462)
.....+|.|-=.||..-=+.|.+. .+.+||.-=-.|+..++|.+||| +++|++-++.++..+-|= .|
T Consensus 221 ~~~~~i~~v~FTGS~~~G~~i~~~~~a~~~~~~~~lELGGknp~IV~~DAd~~~~dld~aa~~i~~~~f~~aGQ----~C 296 (675)
T PRK11563 221 DHLDGQDVVTFTGSAATAQKLRAHPNVVANSVPFTAEADSLNAAILGPDATPGTPEFDLFVKEVVREMTVKAGQ----KC 296 (675)
T ss_pred hcCCCCCEEEEECcHHHHHHHHhhhhhhhCCceEEEecCCcCceEECCCCCcCchhHHHHHHHHHHHHHHhCCC----cc
Confidence 433358999999999988887763 22588888888999999999995 999999999998875444 56
Q ss_pred HHHHHhhhcccc
Q psy11677 337 KAIYNLADQGEM 348 (462)
Q Consensus 337 ~~~~~~~~~~~~ 348 (462)
.+...+..|..|
T Consensus 297 ~a~~rv~V~~~i 308 (675)
T PRK11563 297 TAIRRAIVPRAL 308 (675)
T ss_pred ccceeEEeeHHH
Confidence 666666555554
|
|
| >KOG2436|consensus | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.16 Score=54.85 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=70.7
Q ss_pred cCCccccChHHHHHHHHHHcCCCeEEEEecCcccc-cCCCCCCCCcccccccHHhHHhhhhc-CCCCCCCCcchHHHHHH
Q psy11677 26 QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIY-TKAPWEEGAKMIWTYTSEMRDTVQFG-QKSKVGTGGMDSKVNSA 103 (462)
Q Consensus 26 ~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY-~~dP~~p~AklI~~I~~~e~~~l~~~-~~s~~gtGGM~~Kl~AA 103 (462)
++++--.+.|++|..+|..|+++++++++|+ |.. .. +++.++.+...+...+... +....++++|..++...
T Consensus 249 SGqvlnvNa~~~a~elA~~L~~~kli~l~d~-g~~l~e-----~ge~~S~l~l~~e~~~l~k~~qq~~~a~~~v~aV~~~ 322 (520)
T KOG2436|consen 249 SGQVLNVNADEVAGELALALGPDKLILLMDK-GRILKE-----NGEDISSLILQEEDAGLRKPSQQKNIAANNVKAVKDG 322 (520)
T ss_pred ccceEEeeHHHHhhHHHhccCcceeEEeccc-cccccc-----CcccccccccchhHhhhhhhhhhcccccccchhhhhh
Confidence 4556668999999999999999999999998 543 43 4566666655444333211 22345677776665554
Q ss_pred HHHHHcCCeEEEEeCCChhH-HHHHHcCCccccccccC
Q psy11677 104 TWALDRGVSVVICNGMQKEA-IKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 104 ~~a~~~Gv~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~ 140 (462)
..+..-+.+.+........+ +.+.+.+.+.||+|.+.
T Consensus 323 ~~~~~p~~~s~~i~~~t~~n~~~~~~te~G~~t~~~~g 360 (520)
T KOG2436|consen 323 IDSSLPRPSSYNIAITTQQNLIKELFTEKGAGTLISGG 360 (520)
T ss_pred eeeccCcCCCCCcceeecccccceeeccCCCCccccCc
Confidence 44322222224444444444 67788888899999875
|
|
| >cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.45 Score=50.77 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
++++.|++|.+..+.++.++|.++|+++++.|++++++|.+++.+|.-
T Consensus 2 ~~~~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~G 49 (434)
T cd07133 2 ALLERQKAAFLANPPPSLEERRDRLDRLKALLLDNQDALAEAISADFG 49 (434)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467889999999999999999999999999999999999999999875
|
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD. |
| >PLN02203 aldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.53 Score=51.14 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..+..|+.|.+.-+.++.++|.++|+++++.|++++++|.+++.+|+-+. +.+++...+...-+.++..++.++++
T Consensus 10 ~av~~a~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~----~~ea~~~Ev~~~~~~~~~~~~~~~~~ 85 (484)
T PLN02203 10 GSVAELRETYESGRTRSLEWRKSQLKGLLRLLKDNEEAIFKALHQDLGKH----RVEAYRDEVGVLTKSANLALSNLKKW 85 (484)
T ss_pred HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999987432 23445556666667777777777776
Q ss_pred H
Q psy11677 445 A 445 (462)
Q Consensus 445 a 445 (462)
+
T Consensus 86 ~ 86 (484)
T PLN02203 86 M 86 (484)
T ss_pred h
Confidence 5
|
|
| >cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.85 Score=49.36 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=50.9
Q ss_pred HHHHHHHHHH-HHh-cCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSR-VLQ-GLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 366 ~~~~Ar~As~-~L~-~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
.++.|++|.+ .-. .++.++|.++|+++++.|++++++|.+++.+|. |.+.....|+ .++..++.++.
T Consensus 49 av~~a~~a~~~~W~~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~------Gk~~~~~~~~-----ev~~~~~~~~~ 117 (481)
T cd07143 49 AVEVAHAAFETDWGLKVSGSKRGRCLSKLADLMERNLDYLASIEALDN------GKTFGTAKRV-----DVQASADTFRY 117 (481)
T ss_pred HHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc------CCChHHHHHH-----HHHHHHHHHHH
Confidence 4456777766 466 899999999999999999999999999988873 3333222222 25555556665
Q ss_pred HHhCC
Q psy11677 444 IAESS 448 (462)
Q Consensus 444 ia~l~ 448 (462)
.+.+.
T Consensus 118 ~a~~a 122 (481)
T cd07143 118 YGGWA 122 (481)
T ss_pred HHHHH
Confidence 55544
|
NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD. |
| >cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1 | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.81 Score=48.95 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|.++++.|.+++++|.+++.+|.
T Consensus 23 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 69 (457)
T cd07090 23 LAVKSAKAAQKEWSATSGMERGRILRKAADLLRERNDEIARLETIDN 69 (457)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 46677899999999999999999999999999999999999998885
|
NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis. |
| >cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.87 Score=48.62 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|+.|....+.++.++|.++|+++++.|.+++++|..++.+|.
T Consensus 23 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 69 (455)
T cd07093 23 AAVAAAKEAFPGWSRMSPAERARILHKVADLIEARADELALLESLDT 69 (455)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667899999999999999999999999999999999998888875
|
In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone. |
| >cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins | Back alignment and domain information |
|---|
Probab=89.26 E-value=1.1 Score=48.39 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
..++.|++|....+.++.++|.++|+++++.|.+++++|..+
T Consensus 39 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 80 (478)
T cd07086 39 AAVAAAREAFKEWRKVPAPRRGEIVRQIGEALRKKKEALGRL 80 (478)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456678999999999999999999999999999999998766
|
ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105). |
| >cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.13 E-value=1.2 Score=47.71 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhc--CCCHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRL--SLTPSKLKSLSTGLK 442 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL--~L~~~ri~~m~~~l~ 442 (462)
..++.|++|.+..+.++.++|.++|.++|+.|.+++++|.+++.+| .|.+...-+++ ...-+.++..+..++
T Consensus 40 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e------~Gk~~~~~~~~ev~~~~~~~~~~~~~~~ 113 (466)
T cd07138 40 RAVAAARRAFPAWSATSVEERAALLERIAEAYEARADELAQAITLE------MGAPITLARAAQVGLGIGHLRAAADALK 113 (466)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556889999999999999999999999999999999998877554 44444333332 234456666766666
Q ss_pred HHH
Q psy11677 443 QIA 445 (462)
Q Consensus 443 ~ia 445 (462)
++.
T Consensus 114 ~~~ 116 (466)
T cd07138 114 DFE 116 (466)
T ss_pred hcc
Confidence 553
|
The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD. |
| >TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.95 Score=48.95 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|.+..+.++.++|.++|+++++.|++++++|.+++.+|.
T Consensus 42 ~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~l~~~~~~e~ 88 (488)
T TIGR02299 42 RAAKAAKEAFKRWAELKAAERKRYLHKIADLIEQHADEIAVLECLDC 88 (488)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 35668899999999999999999999999999999999999888874
|
This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring. |
| >cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like | Back alignment and domain information |
|---|
Probab=88.25 E-value=1.1 Score=47.87 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
...++.|++|....+.++.++|.++|+++++.|++++++|.++..+|.-
T Consensus 16 ~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 64 (443)
T cd07152 16 DRAAARAAAAQRAWAATPPRERAAVLRRAADLLEEHADEIADWIVRESG 64 (443)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 3456678999999999999999999999999999999999988888754
|
NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids. |
| >cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.99 Score=48.30 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSD 413 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~ 413 (462)
...++.|+.|.+..+.++.++|.++|+++++.|++++++|.+++.+|.-+
T Consensus 22 ~~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 71 (457)
T cd07108 22 DRAVAAAKAAFPEWAATPARERGKLLARIADALEARSEELARLLALETGN 71 (457)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCC
Confidence 34567789999999999999999999999999999999999999988643
|
NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD. |
| >cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like | Back alignment and domain information |
|---|
Probab=87.66 E-value=1.2 Score=47.74 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
..++.|++|.+..+.++.++|.++|+++++.|.++++++..++..|.-+ .+.++....+....+.++.++...++
T Consensus 22 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk----~~~~a~~~e~~~~~~~~~~~~~~~~~ 96 (465)
T cd07098 22 EAIAAARAAQREWAKTSFAERRKVLRSLLKYILENQEEICRVACRDTGK----TMVDASLGEILVTCEKIRWTLKHGEK 96 (465)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999999998887766432 23344444555566677777666555
|
Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation. |
| >cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like | Back alignment and domain information |
|---|
Probab=87.50 E-value=1.2 Score=47.76 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPS 432 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ 432 (462)
..++.|++|.+..+.++.++|.++|+++|+.|++++++|.+...++.-+ ...++.++++.+..+
T Consensus 8 ~av~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk----~~~~~~~~~~~~~~~ 71 (429)
T cd07121 8 DAVAAAKAAQKQYRKCTLADREKIIEAIREALLSNAEELAEMAVEETGM----GRVEDKIAKNHLAAE 71 (429)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999999999876544211 222355666655433
|
Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source. |
| >cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like | Back alignment and domain information |
|---|
Probab=87.15 E-value=1.2 Score=47.54 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
..++.|++|....+.++.++|.++|+++++.|.+++++|.+++.+|.-
T Consensus 22 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~G 69 (454)
T cd07101 22 AAFARARAAQRAWAARPFAERAAVFLRFHDLVLERRDELLDLIQLETG 69 (454)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 345678999999999999999999999999999999999999988864
|
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s). |
| >PRK13252 betaine aldehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.47 E-value=1.4 Score=47.62 Aligned_cols=48 Identities=13% Similarity=0.345 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
..++.|++|.+..+.++.++|.++|+++|+.|++++++|..++.+|.-
T Consensus 48 ~av~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 95 (488)
T PRK13252 48 AAVASAKQGQKIWAAMTAMERSRILRRAVDILRERNDELAALETLDTG 95 (488)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 345578999999999999999999999999999999999988877653
|
|
| >cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like | Back alignment and domain information |
|---|
Probab=86.47 E-value=2.7 Score=44.89 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..++.|++|....+.++.++|.++|+++++.|.+++++|.++= .++.|.+... ....+...++.++..
T Consensus 23 ~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~------~~e~Gk~~~~------a~~ev~~~~~~l~~~ 90 (446)
T cd07106 23 QAVAAAKAAFPGWSATPLEERRAALLAIADAIEANAEELARLL------TLEQGKPLAE------AQFEVGGAVAWLRYT 90 (446)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHcCCCHHH------HHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999987662 3445554421 113566777777777
Q ss_pred HhCC
Q psy11677 445 AESS 448 (462)
Q Consensus 445 a~l~ 448 (462)
+.+.
T Consensus 91 ~~~~ 94 (446)
T cd07106 91 ASLD 94 (446)
T ss_pred Hhhh
Confidence 6665
|
Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD. |
| >PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.29 E-value=1.5 Score=47.81 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSD 413 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~ 413 (462)
...++.|++|.+..+.++.++|.++|.++++.|++++++|.+++.+|+-+
T Consensus 56 ~~av~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~el~~~~~~e~Gk 105 (496)
T PLN00412 56 NKAMESAKAAQKAWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAK 105 (496)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Confidence 35667789999999999999999999999999999999999999999754
|
|
| >cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp | Back alignment and domain information |
|---|
Probab=86.15 E-value=3 Score=44.50 Aligned_cols=74 Identities=8% Similarity=0.100 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChh-hhhhcCCCHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKP-LLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~-l~dRL~L~~~ri~~m~~~l~~ 443 (462)
..++.|++|.+..+.++.++|.++|+.+++.|+++++++.++- +.+.|.+.. ....+...-..++.++..+++
T Consensus 22 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~------~~e~Gk~~~~~~~ev~~~~~~~~~~~~~~~~ 95 (452)
T cd07102 22 AALERARAAQKGWRAVPLEERKAIVTRAVELLAANTDEIAEEL------TWQMGRPIAQAGGEIRGMLERARYMISIAEE 95 (452)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHH------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999887552 344455443 123444455677777777766
Q ss_pred H
Q psy11677 444 I 444 (462)
Q Consensus 444 i 444 (462)
.
T Consensus 96 ~ 96 (452)
T cd07102 96 A 96 (452)
T ss_pred h
Confidence 5
|
PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD. |
| >cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like | Back alignment and domain information |
|---|
Probab=85.99 E-value=1.7 Score=46.18 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|.+..+.++.++|.++|+++++.|+++.+++.+++..|.
T Consensus 4 ~ai~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 50 (432)
T cd07105 4 QAVEAAAAAFPAWSKTPPSERRDILLKAADLLESRRDEFIEAMMEET 50 (432)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999888876
|
Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD. |
| >cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like | Back alignment and domain information |
|---|
Probab=85.90 E-value=1.9 Score=46.63 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
..+..|++|....+.++.++|.++|+++++.|++++++|..+...|.-+ -+.++....+...-++++..+..++.
T Consensus 42 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk----~~~~a~~~ev~~~~~~~~~~a~~~~~ 116 (479)
T cd07116 42 LALDAAHAAKEAWGKTSVAERANILNKIADRMEANLEMLAVAETWDNGK----PVRETLAADIPLAIDHFRYFAGCIRA 116 (479)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3456788899999999999999999999999999999998777765311 12233333444445555555555544
|
Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression. |
| >KOG2450|consensus | Back alignment and domain information |
|---|
Probab=85.81 E-value=2.9 Score=45.46 Aligned_cols=181 Identities=17% Similarity=0.083 Sum_probs=116.6
Q ss_pred CCCCceeeEEEE-eCCCCc---------------ccccccccccchHHHHH--hhcCCC----CeEEeec-C-HHHHHHH
Q psy11677 209 GGTPVEVLAEIW-KNETLN---------------TTVPKKHAKTSQCKYFT--KMLPRY----PLHSQVS-T-REEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~Iy-Esr~~P---------------nv~~~~ea~~sn~~~l~--~al~~~----~~v~~v~-~-r~~~~~l 264 (462)
.+.|+||+|.|- .+. | |+.+-|-+..|-..+++ +.++++ +.+.+|+ + ++.=..|
T Consensus 155 ~~eP~GV~G~I~pWN~--Pllm~awKlaPALa~GNtvV~Kpae~tplsal~~~~l~~eaG~P~GVvNii~G~G~~aG~al 232 (501)
T KOG2450|consen 155 RREPIGVCGQIIPWNF--PLLMQAWKLAPALAAGNTVVLKPAEQTPLTALYLASLCKEAGFPPGVVNIVPGSGTTAGAAL 232 (501)
T ss_pred cCCcceeeeEeccCch--HHHHHHHhhhhHHhhCcEEEecCCCCCCchHHHHHHHhHHhcCCcceEEEccCCCchHHHHH
Confidence 499999999993 222 4 23333666555545565 777777 9999999 3 4444444
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
. .+-.||-|-=.||-.--+.|++.+. ..||=---.|=-...|-.|||+++|++-+..+--.+++- +|-|--.
T Consensus 233 ~-sH~dv~kiaFTGSt~~G~~I~~aaa~~n~K~vtLElGGKsp~Ivf~Dadld~av~~~~~~iF~nqGq----~C~a~sR 307 (501)
T KOG2450|consen 233 A-SHPDVDKVAFTGSTPVGKEIMEAAAESNLKPVTLELGGKSPIIVFDDADLDLAVENAAFGIFFNQGQ----CCTAGSR 307 (501)
T ss_pred h-hCCCCceEEecCCCcchhHHhhhhhhcCCceeccccCCCCcceEecccchHHHHHHHHHHhhccccc----ccccCce
Confidence 4 4456999999999988888887652 378877778888889999999999999988886665544 5555555
Q ss_pred hhhcccccccChhhHHHHHHhHHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q psy11677 342 LADQGEMDVSGLPCLLLFIRLGSL---FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISK 399 (462)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~ 399 (462)
+..|+.|.-. .+.++.+.... +..-.....++=+..+.++.++++.-+.....+-
T Consensus 308 ~~Vqe~iyde---fv~~~v~~a~~~~kvGdP~~~~~~qG~~i~~~q~ekI~~yi~~~k~eG 365 (501)
T KOG2450|consen 308 VFVQESIYDE---FVEKFVAAAKKKLKVGDPFDEGTEQGPQISKTQYEKILGYIESGKKEG 365 (501)
T ss_pred eEEechHHHH---HHHHHHHHHhcccccCCCCCcccccccccCHHHHHHHHHHHHHHHhcC
Confidence 6666655332 22222221100 0000112233334677788888887777666554
|
|
| >cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins | Back alignment and domain information |
|---|
Probab=85.30 E-value=1.3 Score=46.96 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
+.++.|++|...-+.++.++|.++|+++++.|++++++|.++...|.-+. +..+....+...-..++.+++.++..
T Consensus 2 ~~v~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~----~~~~~~~Ev~~~~~~~~~~~~~~~~~ 77 (426)
T cd07087 2 ELVARLRETFLTGKTRSLEWRKAQLKALKRMLTENEEEIAAALYADLGKP----PAEAYLTEIAVVLGEIDHALKHLKKW 77 (426)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999998887764322 11233334455556666666666554
|
ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate. |
| >TIGR01804 BADH glycine betaine aldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=85.10 E-value=1.9 Score=46.33 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|.++|+.|.+++++|.+++.+|.
T Consensus 39 ~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 85 (467)
T TIGR01804 39 RAIAAARRAQGEWASMTPEERGRILRRIAELIRERNEELAKLETLDT 85 (467)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45567899999999999999999999999999999999987776664
|
Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171). |
| >cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like | Back alignment and domain information |
|---|
Probab=84.88 E-value=2.2 Score=46.16 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
.++.|++|....+.++.++|.++|+++++.|++++++|..+..+|.-+ .+.++....+...-++++..+..++.
T Consensus 43 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk----~~~~a~~~ev~~~~~~~~~~a~~~~~ 116 (480)
T cd07559 43 AVDAAHEAFKTWGKTSVAERANILNKIADRIEENLELLAVAETLDNGK----PIRETLAADIPLAIDHFRYFAGVIRA 116 (480)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999999999999999998877766321 12233333344444555555555444
|
Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences. |
| >cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like | Back alignment and domain information |
|---|
Probab=84.77 E-value=1.7 Score=46.37 Aligned_cols=48 Identities=10% Similarity=0.302 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSD 413 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~ 413 (462)
++..|++|....+.++.++|.++|.++++.|++++++|.+.+..|..+
T Consensus 3 ~~~~a~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk 50 (433)
T cd07134 3 VFAAQQAHALALRASTAAERIAKLKRLKKAILARREEIIAALAADFRK 50 (433)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 567799999999999999999999999999999999999999988633
|
Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD. |
| >PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.9 Score=47.27 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
..++.|++|.+..+.++.++|.++|+++++.|.++++++.+++.+|.-
T Consensus 58 ~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~e~G 105 (524)
T PRK09407 58 AAFARARAAQRAWAATPVRERAAVLLRFHDLVLENREELLDLVQLETG 105 (524)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 455678999999999999999999999999999999999999988874
|
|
| >cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA | Back alignment and domain information |
|---|
Probab=83.93 E-value=2.2 Score=46.59 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
.++.|++|....+.++.++|.++|+++++.|.+++++|..++.+|.
T Consensus 74 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 119 (518)
T cd07125 74 ALAIAAAAFAGWSATPVEERAEILEKAADLLEANRGELIALAAAEA 119 (518)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3567899999999999999999999999999999999999999984
|
The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. |
| >cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like | Back alignment and domain information |
|---|
Probab=83.50 E-value=3.3 Score=44.56 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
..++.||+|....+.++.++|.++|+++++.|.+++++|..+
T Consensus 41 ~av~~a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~ela~~ 82 (478)
T cd07131 41 AAVEAAREAFPEWRKVPAPRRAEYLFRAAELLKKRKEELARL 82 (478)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999999999999999765
|
Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD. |
| >cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like | Back alignment and domain information |
|---|
Probab=83.50 E-value=2.4 Score=45.51 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|+++++.|.+++++|..+..+|.
T Consensus 36 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 82 (465)
T cd07151 36 EAYRAAAAAQKEWAATLPQERAEILEKAAQILEERRDEIVEWLIRES 82 (465)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 44567899999999999999999999999999999999998876653
|
NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD. |
| >cd07099 ALDH_DDALDH Methylomonas sp | Back alignment and domain information |
|---|
Probab=83.41 E-value=2.4 Score=45.19 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|.++++.|.++++++.+++.+|.
T Consensus 22 ~av~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 68 (453)
T cd07099 22 AAVARARAAQRAWAALGVEGRAQRLLRWKRALADHADELAELLHAET 68 (453)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567888889999999999999999999999999999998888875
|
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid. |
| >cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like | Back alignment and domain information |
|---|
Probab=83.33 E-value=3.2 Score=44.42 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|+.|....+.++.++|.++|+.+++.|++++++|..++.+|.
T Consensus 23 ~av~~a~~A~~~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~~~e~ 69 (453)
T cd07115 23 AAVAAARAAFEAWSAMDPAERGRILWRLAELILANADELARLESLDT 69 (453)
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45667899999999999999999999999999999999998888873
|
4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD. |
| >cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like | Back alignment and domain information |
|---|
Probab=83.31 E-value=2.5 Score=45.02 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
...++.|++|....+.++.++|.++|+++++.|.+++++|.++..+|.
T Consensus 22 ~~av~~a~~a~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~ 69 (450)
T cd07092 22 DAAVAAAHAAFPSWRRTTPAERSKALLKLADAIEENAEELAALESRNT 69 (450)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 346678899999999999999999999999999999999998888773
|
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency. |
| >cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like | Back alignment and domain information |
|---|
Probab=82.79 E-value=2.7 Score=44.97 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|....+.++.++|.++|+++++.|.++++++.+++.+|.
T Consensus 23 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 69 (456)
T cd07110 23 AAVRAARRAFPRWKKTTGAERAKYLRAIAEGVRERREELAELEARDN 69 (456)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45667899999999999999999999999999999999998888774
|
Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine. |
| >cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2 | Back alignment and domain information |
|---|
Probab=82.55 E-value=3.6 Score=44.37 Aligned_cols=42 Identities=10% Similarity=0.172 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHh
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDA 406 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~A 406 (462)
..++.|++|.+..+.++.++|.++|.++++.|+++++++..+
T Consensus 42 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~ 83 (478)
T cd07085 42 AAVAAAKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELARL 83 (478)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999888765
|
Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD. |
| >cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like | Back alignment and domain information |
|---|
Probab=82.23 E-value=2.8 Score=44.83 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQ-GLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~-~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|.+... .++.++|.++|.++++.|.+++++|..++.+|.
T Consensus 23 ~av~~a~~A~~~~~~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~ 70 (454)
T cd07109 23 RAVQAARRAFESGWLRLSPAERGRLLLRIARLIREHADELARLESLDT 70 (454)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 45567888888766 999999999999999999999999999988884
|
Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD. |
| >TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=81.92 E-value=2.9 Score=45.20 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
...++.|++|....+.++.++|.++|+++++.|.+++++|..+-..|
T Consensus 38 ~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 84 (484)
T TIGR03240 38 EAAVAAARAAFPAWARLSLEERIAVVQRFAALLEERKEALARVIARE 84 (484)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999998764433
|
Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism. |
| >PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=81.81 E-value=3.5 Score=44.15 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..++.|++|.+.++.++.++|.++|+.+++.|+++++++.+....|.
T Consensus 33 ~av~~A~~A~~~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~e~ 79 (462)
T PF00171_consen 33 RAVEAARAAFKEWSKLPAAERARILERFADLLEERRDELAELIALET 79 (462)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccccccccccccc
Confidence 34567899999999999999999999999999999999998888775
|
2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A .... |
| >PRK15398 aldehyde dehydrogenase EutE; Provisional | Back alignment and domain information |
|---|
Probab=81.40 E-value=3.3 Score=44.79 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.|++|.+..+.++.++|.++|+++++.|++++++|.++-.+|
T Consensus 40 ~av~~A~~A~~~w~~~~~~~R~~~L~~la~~l~~~~~ela~~~~~E 85 (465)
T PRK15398 40 DAVAAAKVAQQRYQQKSLAMRQRIIDAIREALLPHAEELAELAVEE 85 (465)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999999999999999999999999999885443
|
|
| >cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like | Back alignment and domain information |
|---|
Probab=81.31 E-value=3.3 Score=44.12 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
...++.|++|....+.++.++|.++|+++++.|+++++++.++...|.-+- +.++..+ +....+.++.++...++
T Consensus 24 ~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~~a~~e-v~~~~~~l~~~~~~~~~ 98 (451)
T cd07150 24 ERAIAAAYDAFPAWAATTPSERERILLKAAEIMERRADDLIDLLIDEGGST----YGKAWFE-TTFTPELLRAAAGECRR 98 (451)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCC----HHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 356678899999999999999999999999999999999988877664221 1122222 33344566666666665
Q ss_pred HH
Q psy11677 444 IA 445 (462)
Q Consensus 444 ia 445 (462)
+.
T Consensus 99 ~~ 100 (451)
T cd07150 99 VR 100 (451)
T ss_pred hc
Confidence 53
|
Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde. |
| >cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins | Back alignment and domain information |
|---|
Probab=80.49 E-value=3.7 Score=43.37 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
..++.|+.|....+.++.++|.++|+++++.|.++++++.++..+|..
T Consensus 4 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 51 (431)
T cd07104 4 RAYAAAAAAQKAWAATPPQERAAILRKAAEILEERRDEIADWLIRESG 51 (431)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 356778999999999999999999999999999999999988887753
|
ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences. |
| >cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11 | Back alignment and domain information |
|---|
Probab=80.42 E-value=3.4 Score=44.46 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGL-NPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLK 442 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~l-s~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~ 442 (462)
...++.|++|.+..... +.++|.++|+++++.|.++++++.++..+|.-+..... ..-++| .-+.++.++..++
T Consensus 41 ~~av~~A~~A~~~w~~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a--~~ev~~---~~~~l~~~~~~~~ 115 (473)
T cd07082 41 LEAAETAYDAGRGWWPTMPLEERIDCLHKFADLLKENKEEVANLLMWEIGKTLKDA--LKEVDR---TIDYIRDTIEELK 115 (473)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHH---HHHHHHHHHHHHH
Confidence 34556788888888878 99999999999999999999999999988864332110 011222 4456666666666
Q ss_pred HH
Q psy11677 443 QI 444 (462)
Q Consensus 443 ~i 444 (462)
.+
T Consensus 116 ~~ 117 (473)
T cd07082 116 RL 117 (473)
T ss_pred Hh
Confidence 55
|
NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants. |
| >cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family | Back alignment and domain information |
|---|
Probab=80.41 E-value=3.8 Score=43.19 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
.++.|++|....+.++.++|.++|..+++.|.+++++|.+++.+|.-
T Consensus 3 av~~a~~a~~~w~~~~~~~R~~~l~~~~~~l~~~~~~l~~~~~~etG 49 (432)
T cd07078 3 AVAAARAAFKAWAALPPAERAAILRKLADLLEERREELAALETLETG 49 (432)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999999999888753
|
The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 462 | ||||
| 2h5g_A | 463 | Crystal Structure Of Human Pyrroline-5-carboxylate | 1e-17 | ||
| 2h5g_A | 463 | Crystal Structure Of Human Pyrroline-5-carboxylate | 7e-06 | ||
| 1vlu_A | 468 | Crystal Structure Of Gamma-Glutamyl Phosphate Reduc | 6e-16 | ||
| 2j5v_A | 367 | Glutamate 5-kinase From Escherichia Coli Complexed | 5e-09 | ||
| 2w21_A | 259 | Crystal Structure Of The Aminoacid Kinase Domain Of | 1e-08 | ||
| 4ghk_A | 444 | X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate | 1e-08 | ||
| 2ako_A | 251 | Crystal Structure Of Glutamate 5-Kinase From Campyl | 3e-06 | ||
| 1o20_A | 427 | Crystal Structure Of Gamma-glutamyl Phosphate Reduc | 4e-05 |
| >pdb|2H5G|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate Synthetase Length = 463 | Back alignment and structure |
|
| >pdb|2H5G|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate Synthetase Length = 463 | Back alignment and structure |
|
| >pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase (Yor323c) From Saccharomyces Cerevisiae At 2.40 A Resolution Length = 468 | Back alignment and structure |
|
| >pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With Glutamyl-5-phosphate And Pyroglutamic Acid Length = 367 | Back alignment and structure |
|
| >pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The Glutamate 5 Kinase Of Escherichia Coli Length = 259 | Back alignment and structure |
|
| >pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate Reductase From Burkholderia Thailandensis Length = 444 | Back alignment and structure |
|
| >pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter Jejuni Length = 251 | Back alignment and structure |
|
| >pdb|1O20|A Chain A, Crystal Structure Of Gamma-glutamyl Phosphate Reductase (tm0293) From Thermotoga Maritima At 2.00 A Resolution Length = 427 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens} Length = 463 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 38/66 (57%), Positives = 52/66 (78%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
V+TREE+ DL ++K IDLIIPRGSS LVR IQ+ ++ IPV+GH+EGICH+YVD +A +
Sbjct: 204 VNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVD 263
Query: 315 KAIKIA 320
K ++
Sbjct: 264 KVTRLV 269
|
| >2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens} Length = 463 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 9e-18
Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
RSG R+L L PE RA+ I++LADLL ++ ++L AN KDL +A + +A PLL RLSL+
Sbjct: 39 RSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA-EGRLAAPLLKRLSLS 97
Query: 431 PSKLKSLSTGLKQIAESSHTNVGK 454
SKL SL+ GL+QIA SS +VG+
Sbjct: 98 TSKLNSLAIGLRQIAASSQDSVGR 121
|
| >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 9e-27
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAP-WEEGAKMI--WTYTSEMRDTVQF 85
S+ D L + + + +IL +DV+G+YT+ P A+++ ++
Sbjct: 155 FSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLD-- 212
Query: 86 GQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKI-GTFFT 138
G + TGGM K+ ++GV I N I++ + G ++ GT T
Sbjct: 213 GTLNTDVTGGMVGKIRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266
|
| >1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1 Length = 468 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 6e-26
Identities = 35/66 (53%), Positives = 55/66 (83%), Gaps = 1/66 (1%)
Query: 255 VSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314
+ TR+++SDLL +++IDL++PRGS+ LVR I+ ++ IPVLGHA+GIC +Y+D+DAD+
Sbjct: 195 IETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTK-IPVLGHADGICSIYLDEDADLI 253
Query: 315 KAIKIA 320
KA +I+
Sbjct: 254 KAKRIS 259
|
| >1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1 Length = 468 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 7e-14
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSL- 429
R +L+ ++ E R+ +Y + D L + + +AN DL+ A + G+A LL RL L
Sbjct: 24 RKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLF 83
Query: 430 TPSKLKSLSTGLKQIAE 446
K + + G+K +AE
Sbjct: 84 KGDKFEVMLQGIKDVAE 100
|
| >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-25
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAP-WEEGAKMIWTYTSEMRDTVQFGQ 87
I D + A +A ++ D+ + ++DV+GIY+K P A ++ ++ + F +
Sbjct: 142 YGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLL----RDIDTNITFDR 197
Query: 88 KSKVGTGGMDSKVNSAT-WALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
TGG+ K S V + NG E I I IGT
Sbjct: 198 VQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVI 248
|
| >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 170 ALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
V + NG E I I IGT
Sbjct: 217 KSSVKNGVYLINGNHPERIGDIGKESFIGTVI 248
|
| >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Length = 367 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEE-GAKMI---WTYTSEMRDTVQFGQK 88
DND+L+A+ A AD L+L++D G+YT P A++I + +R
Sbjct: 148 DNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAG-DSV 206
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
S +GTGGM +K+ +A A G+ +I G + I ++ G +GT F
Sbjct: 207 SGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFH 256
|
| >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Length = 251 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 5e-24
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQF--GQKS 89
DNDSL+A ADLL+++SD++G Y K P E AK + T + +Q S
Sbjct: 141 DNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGS 200
Query: 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVA--GRKIGTFF 137
+ GTGG+ +K+ +A + L+ + + +G K + + GT F
Sbjct: 201 EHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 250
|
| >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* Length = 286 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 2e-20
Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
Query: 29 ISIKDNDSLAAMLAAEIQADL-LILMSDVNGIYTKAPWEEG-AKMIWTYTSEMRDTVQFG 86
+ +D + +L ++ L ++ ++DV+GI T + + + E +G
Sbjct: 164 LWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPEQAYAALWG 223
Query: 87 QKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
TG M +K+++ RG I G ++ + A
Sbjct: 224 SSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHV 275
|
| >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 7e-20
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSK 90
I D + LA E++ADL++ +DV+G+ K I G S
Sbjct: 162 IISGDDIVPYLANELKADLILYATDVDGVLIDNK---PIKRIDKNNIYKILNYLSGSNSI 218
Query: 91 VGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
TGGM K+ + NG + I + + G GT
Sbjct: 219 DVTGGMKYKIE---MIRKNKCRGFVFNGNKANNIYKALLGEVEGTEI 262
|
| >1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1 Length = 427 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 2e-19
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 258 REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAI 317
R + +++ + +++ L+IPRG L+ ++ + +PVL G CH++VD+ AD++KA+
Sbjct: 195 RSLVLEMIRLREYLSLVIPRGGYGLISFVRDNAT-VPVLETGVGNCHIFVDESADLKKAV 253
Query: 318 KIA 320
+
Sbjct: 254 PVI 256
|
| >1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1 Length = 427 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
R VL+ ++ KAI +A+ L ++ ++L+AN D+ A + GV + L+ RL+L
Sbjct: 24 REAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALN 83
Query: 431 PSKLKSLSTGLKQIAE 446
++ + + +
Sbjct: 84 DKRIDEMIKACETVIG 99
|
| >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-14
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSK 90
D++AA+LA ++ADLL+++++V+G+YT P + AK I E+ + V G +
Sbjct: 138 TTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKA 197
Query: 91 VGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
+ +D +A G+ ++ + + +++ G GT
Sbjct: 198 GSSSVIDPL--AAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 242
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 1e-11
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEE---GAKMIWTYTSEMRDTVQFGQ-KS 89
D+ A +LA A L ++ +V+GIYT P A+ +
Sbjct: 170 ADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFL--------PETSATDLAK 221
Query: 90 KVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
G +D + V + NG+ + + G +GT
Sbjct: 222 SEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIR 270
|
| >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-10
Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSKVG 92
++AA++A + L++ ++V+G+Y K P K+I T ++R ++ Q + G
Sbjct: 120 AAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAG 179
Query: 93 TGG-MDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
T +D + + V++ N + I I+ G ++ +
Sbjct: 180 TYELLDPL--AIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSS 221
|
| >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix} Length = 316 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 2e-10
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D +++LA ++ ADLL++++DV G+ E + SE++ ++ G
Sbjct: 215 DKDLASSLLATQLNADLLVILTDVPGVAVNYGREGERWLRRAAASELKKYLREGH---FP 271
Query: 93 TGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFFT 138
G M KV +A ++R VI + E +Q+++ + GT
Sbjct: 272 PGSMGPKVEAAISFVERTGKPAVIGSL---EEARQVLSL-QAGTVVM 314
|
| >3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} Length = 317 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 3e-10
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D ++LA + +D L++++DV + K+ SE+ + G
Sbjct: 216 DKDLATSLLAKTLNSDYLMILTDVLNACINYKKPDERKLEEIKLSEILALEKDGH---FA 272
Query: 93 TGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFFT 138
G M KV +A +I + + G K GT
Sbjct: 273 AGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNG-KCGTRII 315
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 1e-09
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVGT 93
D+ +LA + +I + D +G+YT P + A I + + + G +
Sbjct: 170 DAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRIS--VDEMKAKGLHDSI-- 225
Query: 94 GGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
++ V + V + NG+ + + +AG +GT
Sbjct: 226 --LEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGT 265
|
| >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Length = 314 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 5e-09
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D LA E+ AD+ ++++DVNG E+ + E+R + G
Sbjct: 214 DKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREVKVEELRKYYEEGH---FK 270
Query: 93 TGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGT 135
G M KV +A ++ G +I + E + + G K GT
Sbjct: 271 AGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEG-KTGT 310
|
| >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* Length = 310 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 5e-09
Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D + LA + AD L++++ V+ + + ++ +E+ + Q G
Sbjct: 208 DKDFASEKLAELVDADALVILTGVDYVCINYGKPDEKQLTNVTVAELEEYKQAGH---FA 264
Query: 93 TGGMDSKVNSATWALDRGV--SVVICNGMQKEAIKQIVAGRKIGT 135
G M K+ +A ++ +I + E + + +GT
Sbjct: 265 PGSMLPKIEAAIQFVESQPNKQAIITSL---ENLGSMSGDEIVGT 306
|
| >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 5e-09
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYT-SEMRDTVQFGQKSKVG 92
D+ AA+LA I+AD+ I ++V+G+Y+ P A + ++ + V
Sbjct: 117 DATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGT 176
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
+D +A + + G E I + V G +GT
Sbjct: 177 NVVIDLL--AAKIIERSKIKTYVILG-TPENIMKAVKGEAVGT 216
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 6e-09
Identities = 69/465 (14%), Positives = 139/465 (29%), Gaps = 109/465 (23%)
Query: 11 QHFLTNFNELFRSIFQKLISIKD-NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGA 69
Q+ + +F F KD D ++L+ E +++ V+G
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL--------- 65
Query: 70 KMIWTYTSEMRDTVQ-FGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIV 128
++ WT S+ + VQ F V + + + ++ E +
Sbjct: 66 RLFWTLLSKQEEMVQKF-----VEE-VLRINYK---FLMSP---------IKTEQRQP-- 105
Query: 129 AGRKIGTFFTDASAQSGGTPVEVLAENVN-LKMEILVNSATWALDRGVSVVICNGMQKEA 187
+ + + + NV+ L+ + + A L +V+I G+ +
Sbjct: 106 --SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GV-LGS 161
Query: 188 IKQIVAG-----RKIGTFFTDA----SAQSGGTPVEVLAEIWKNETLNTTVPKKHAKTSQ 238
K VA K+ + ++ +P VL + L + TS+
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNW--TSR 216
Query: 239 CKYFTKMLPRYPLHSQVSTREEISDLLSMEKHID-LIIPRGSSDLVRSIQQKSQHIPVLG 297
+ + + +H S + E+ LL + + + L++ + V++ ++
Sbjct: 217 SDHSSN--IKLRIH---SIQAELRRLLKSKPYENCLLVLL---N-VQN----AKAWNAFN 263
Query: 298 HAEGICHVYV---DKD-ADIRKAIKIAR-SGSRVLQGLNPEDRAKAIYNLADQGEMDVSG 352
+ C + + K D A S L P++ K++ L +
Sbjct: 264 LS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSL--LLKYLDCRPQD 317
Query: 353 LP---C----LLLFIRLGSLFISG---------------TRSGSRVLQGLNPEDRAKAIY 390
LP L I + G T L L P + K
Sbjct: 318 LPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 391 NLA----DLLISKQADLL-----DANSKDLSDATKNGVAKPLLSR 426
L+ I LL D D+ L+ +
Sbjct: 377 RLSVFPPSAHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 72/453 (15%), Positives = 146/453 (32%), Gaps = 125/453 (27%)
Query: 7 RLCEQ--HFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAP 64
+L Q T+ ++ +I ++ SI+ + + + LL+L +V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVL-LNV-------- 253
Query: 65 WEEGAKMIWTYTSEMRDTVQFGQKSK--VGTGGMDSKV-NSATWALDRGVSVV-ICNGMQ 120
W F K + T +V + + A +S+ +
Sbjct: 254 QN---AKAWNA---------FNLSCKILLTTR--FKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 121 KEAIKQIVAGRKIGTFFTDASAQ-SGGTP--VEVLAENVNLKMEILVNSATW-------- 169
+ +K ++ + + D + P + ++AE I ATW
Sbjct: 300 PDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAE------SIRDGLATWDNWKHVNC 352
Query: 170 -ALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAEIWK------- 221
L + + N ++ +++ ++ F A P +L+ IW
Sbjct: 353 DKLTTIIESSL-NVLEPAEYRKMF--DRLSVFPPSAH-----IPTILLSLIWFDVIKSDV 404
Query: 222 ----NETLNTTVPKKHAKTSQCKYFTKMLPRYPLHS-QVSTREEISDLLSMEKHIDLI-- 274
N+ ++ +K K S + S + + ++ + ++ H ++
Sbjct: 405 MVVVNKLHKYSLVEKQPKES----------TISIPSIYLELKVKLENEYAL--HRSIVDH 452
Query: 275 --IPRG--SSDLVRSIQQKSQ--------HIPVLGHAEGIC---HVYVD---KDADIRK- 315
IP+ S DL Q H+ + H E + V++D + IR
Sbjct: 453 YNIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 316 --AIKIARSGSRVLQGLNPEDRAKAIYN--LADQGEMDVSGLPCLLLFI-RLGSLFISGT 370
A + S LQ L Y + D + +L F+ ++ I
Sbjct: 511 STAWNASGSILNTLQQLK-------FYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 371 RSGSRVLQ-GLNPEDRAKAIYNLADLLISKQAD 402
+ +L+ L ED +AI+ A KQ
Sbjct: 564 Y--TDLLRIALMAED--EAIFEEA----HKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 9e-06
Identities = 88/566 (15%), Positives = 158/566 (27%), Gaps = 188/566 (33%)
Query: 10 EQHFLTNFN-----ELFRSIFQKLISIKDNDSLAAMLAAEIQADLL--ILMSDVNGIYTK 62
E F+ NF+ ++ +SI K ++ D + A L L+S + K
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSK----EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 63 A---------PW------EE--GAKMIWTYTSEMRD----TVQFGQKSKVGTGGMDSKVN 101
+ E M+ E RD Q K V K+
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 102 SATWALDRGVSVVICNGMQKEAIKQIVAG-----RKIGTFFTDA----SAQSGGTPVEVL 152
A L +V+I G+ + K VA K+ + ++ +P VL
Sbjct: 142 QALLELRPAKNVLID-GV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 153 AENVNLKMEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTP 212
L +I N + D ++ + + +++++ + + +
Sbjct: 200 EMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKP----YENC-------- 246
Query: 213 VEVLAEIWKNETLN----------TT----------------VPKKH------------- 233
+ VL + + N TT + H
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 234 -AKTSQCKYFTKMLPR-----YPLH-SQVSTREEISDLLS------------MEKHIDLI 274
K C+ + LPR P S ++ E I D L+ + I+
Sbjct: 307 LLKYLDCR--PQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 275 IPRGSSDLVR------SIQQKSQHIP--VLG---------HAEGI---CHVY--VDKDA- 311
+ R S+ S HIP +L + H Y V+K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 312 -------DIRKAIKIARSGSRVL-----------QGLNPEDRAKA-----IYN------- 341
I +K+ L + + +D Y+
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 342 LADQGEMDVSGLPCLLL---F----IRLGSLFISGTRSGSRVLQGL---------NPEDR 385
+ E + + L F IR S + + S LQ L N
Sbjct: 483 NIEHPERM-TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 386 AKAIYNLADLLISKQADLLDANSKDL 411
+ + + D L + +L+ + DL
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDL 567
|
| >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2 Length = 299 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTG 94
D+ AA +A + A+ L++++D++G+YT+ W + ++ SE+ DT Q
Sbjct: 191 DTAAAAVAEALGAEKLLMLTDIDGLYTR--WPDRDSLV----SEI-DTGTLAQLLPTLEL 243
Query: 95 GMDSKVNSATWALDRGV-SVVICNG 118
GM KV + A+ GV S I +G
Sbjct: 244 GMVPKVEACLRAVIGGVPSAHIIDG 268
|
| >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A* Length = 258 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 2e-07
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 24/112 (21%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIY-------TKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
D A LAA + ADL IL+SDV+GI + + ++I
Sbjct: 162 DQAATALAATLGADL-ILLSDVSGILDGKGQRIAEMTAAKAEQLI--------------- 205
Query: 88 KSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFFT 138
+ + T GM KVN+A A V I + E + + G +GT
Sbjct: 206 EQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257
|
| >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} Length = 298 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR-DTVQFGQKSKVGT 93
D++A LAA + A+ LIL++DV GI E+ + +I E+ V+ +
Sbjct: 197 DTVAGELAAALGAEKLILLTDVAGILEN--KEDPSSLI----KEIDIKGVKKMIEDGKVA 250
Query: 94 GGMDSKVNSATWALDRGV-SVVICNG 118
GGM KV +L +GV + I +G
Sbjct: 251 GGMIPKVKCCIRSLAQGVKTASIIDG 276
|
| >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* Length = 321 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR-DTVQFGQKSKVGT 93
D++A +AA + A+ LIL++D GI + +I + + +
Sbjct: 209 DTVAGEIAAALNAEKLILLTDTRGILED--PKRPESLI----PRLNIPQSRELIAQGIVG 262
Query: 94 GGMDSKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGTFFTDASAQSGGTPVE 150
GGM KV+ +L +GV + I +G A+ +I IGT + P +
Sbjct: 263 GGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGYHEAHQPWQ 321
|
| >3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans} Length = 279 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIY------TKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
D LA +A + AD LILM++V G+ K + + I
Sbjct: 194 DYLATAVAVALAADKLILMTNVKGVLENGAVLEKITSHQVQEKI---------------D 238
Query: 89 SKVGTGGMDSKVNSATWALDRGV-SVVICNG 118
+ V T GM K+ SA + GV V+I +
Sbjct: 239 TAVITAGMIPKIESAAKTVAAGVGQVLIGDN 269
|
| >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 Length = 282 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 6e-06
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 22/91 (24%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIY------TKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
D+ AA +A + A+ LIL++DV+G+ + +E ++I +
Sbjct: 182 DTAAAEIAKSLMAEKLILLTDVDGVLKDGKLISTLTPDEAEELI---------------R 226
Query: 89 SKVGTGGMDSKVNSATWALDRGV-SVVICNG 118
TGGM KV A A+ GV +V I NG
Sbjct: 227 DGTVTGGMIPKVECAVSAVRGGVGAVHIING 257
|
| >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-06
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKV 91
D+ AA A EI AD++++ V+G++ + P A+++ V +
Sbjct: 184 STDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELL--------TAVSHREVLDR 235
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138
G D+ + + +D G+ +++ N + I + V G KIGT T
Sbjct: 236 GLRVADAT--AFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280
|
| >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 Length = 300 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 23/92 (25%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIY-------TKAPWEEGAKMIWTYTSEMRDTVQFGQ 87
D +A +A ++A+ L+L++++ G+ T E+ ++I
Sbjct: 198 DLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVNELI--------------- 242
Query: 88 KSKVGTGGMDSKVNSATWALDRGV-SVVICNG 118
GGM K+ A A+ GV S I +G
Sbjct: 243 ADGTIYGGMLPKIRCALEAVQGGVTSAHIIDG 274
|
| >3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A* Length = 307 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKM-IWTYTSEMRDTVQFGQKSKVGT 93
D A LA + ++ +++ GI G K+ + E D + K
Sbjct: 202 DVAAGELARVFEPLKIVYLNEKGGIIN---GSTGEKISMINLDEEYDDLM----KQSWVK 254
Query: 94 GGMDSKVNSATWALDRGV-SVVICNG 118
G K+ LD S +
Sbjct: 255 YGTKLKIREIKELLDYLPRSSSVAII 280
|
| >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 34 NDSLAAMLAAEIQAD-LLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKV 91
DS AA+ AAE ++ +L+ + V+G+Y P A+ + + F
Sbjct: 159 TDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFY--------EHITFNMALTQ 210
Query: 92 GTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD+ + + +++++ N + AI ++ + T
Sbjct: 211 NLKVMDA--TALALCQENNINLLVFNIDKPNAIVDVLEKKNKYT 252
|
| >3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A* Length = 460 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTG 94
D L +Q ++ ++ G+ + + I ++ D + ++ G
Sbjct: 212 DVAVRALVHALQPYKVVFLTGTGGLLDE--DGDILSSI-NLATDFGDLM----QADWVNG 264
Query: 95 GMDSKVNSATWALDRGVSVVICNG 118
GM K+ LD +
Sbjct: 265 GMRLKLEEIKRLLDDLPLSSSVSI 288
|
| >3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV} Length = 467 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGT- 93
D A L E+Q +I ++ G+ K+I + + ++ +
Sbjct: 215 DFAANELVQELQPYKIIFLTGTGGLLDA-----EGKLI----DSINLSTEYDHLMQQPWI 265
Query: 94 -GGMDSKVNSATWALDRGVSVVICNG 118
GGM K+ LDR +
Sbjct: 266 NGGMRVKIEQIKDLLDRLPLESSVSI 291
|
| >4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVG 92
D+ A + A EI +DL+I + V+GIY K P + + AK + DT+ +
Sbjct: 144 TDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKL--------DTLSYNDALIGD 195
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRK-IGT 135
MD + + A D + +V+CN +K + Q++ ++ + +
Sbjct: 196 IEVMDD--TAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFS 237
|
| >4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A* Length = 464 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 35 DSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKM-IWTYTSEMRDTVQFGQKSKVGT 93
D A LA + ++ +++ GI G K+ + E D + K
Sbjct: 202 DVAAGELARVFEPLKIVYLNEKGGIIN---GSTGEKISMINLDEEYDDLM----KQSWVK 254
Query: 94 GGMDSKVNSATWALDRGV-SVVICNG 118
G K+ LD S +
Sbjct: 255 YGTKLKIREIKELLDYLPRSSSVAII 280
|
| >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVG 92
DS A + EI+AD+++ + V+G+Y P + AK+ + + +
Sbjct: 144 TDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLY--------KNLSYAEVIDKE 195
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140
MD ++ T A D G+ + + N + A++Q+V G + GT +
Sbjct: 196 LKVMDL--SAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 39.2 bits (90), Expect = 7e-04
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 12/42 (28%)
Query: 120 QKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAENVNLKME 161
+K+A+K++ A K+ + D SA P LA + ME
Sbjct: 18 EKQALKKLQASLKL---YADDSA-----P--ALA--IKATME 47
|
| >3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 7e-04
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 34 NDSLAAMLAAEIQADLLILMSDVNGIYTKAPWE-EGAKMIWTYTSEMRDTVQFGQKSKVG 92
DS AA+ A EI ADLL+ + V+G+Y K P + A D++ + + G
Sbjct: 145 TDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRY--------DSLTYDEVIMQG 196
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
MD+ + A D + + I + + +I+ G +IGT
Sbjct: 197 LEVMDT--AAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGT 237
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 462 | |||
| 2j5v_A | 367 | Glutamate 5-kinase; proline biosynthesis, gamma gl | 99.93 | |
| 2ako_A | 251 | Glutamate 5-kinase; structural genomics, PSI, prot | 99.87 | |
| 3ll9_A | 269 | Isopentenyl phosphate kinase; mevalonate biosynthe | 99.86 | |
| 2j4j_A | 226 | Uridylate kinase; transferase, nucleoside monophos | 99.85 | |
| 2rd5_A | 298 | Acetylglutamate kinase-like protein; protein-prote | 99.82 | |
| 2ap9_A | 299 | NAG kinase, acetylglutamate kinase, AGK; structura | 99.81 | |
| 3nwy_A | 281 | Uridylate kinase; allosterically activated form, A | 99.81 | |
| 2egx_A | 269 | Putative acetylglutamate kinase; struc genomics, N | 99.8 | |
| 2v5h_A | 321 | Acetylglutamate kinase; amino-acid biosynthesis, t | 99.8 | |
| 1ybd_A | 239 | Uridylate kinase; alpha/beta/alpha fold, hexamer, | 99.8 | |
| 3ek6_A | 243 | Uridylate kinase; UMPK unique GTP B site, alloster | 99.8 | |
| 2brx_A | 244 | Uridylate kinase; UMP kinase, amino acid kinase, p | 99.8 | |
| 2ogx_A | 276 | Molybdenum storage protein subunit alpha; open alp | 99.8 | |
| 2va1_A | 256 | Uridylate kinase; UMPK, transferase, pyrimidine bi | 99.79 | |
| 1z9d_A | 252 | Uridylate kinase, UK, UMP kinase; structural genom | 99.79 | |
| 2ij9_A | 219 | Uridylate kinase; structural genomics, protein str | 99.79 | |
| 2a1f_A | 247 | Uridylate kinase; PYRH, structural genomics, PSI, | 99.79 | |
| 3ll5_A | 249 | Gamma-glutamyl kinase related protein; alternate m | 99.79 | |
| 4a7w_A | 240 | Uridylate kinase; transferase; HET: GTP; 1.80A {He | 99.78 | |
| 2ogx_B | 270 | Molybdenum storage protein subunit beta; open alph | 99.78 | |
| 3d40_A | 286 | FOMA protein; fosfomycin, antibiotic resistance, k | 99.77 | |
| 2we5_A | 310 | Carbamate kinase 1; arginine catabolism, arginine | 99.77 | |
| 2bty_A | 282 | Acetylglutamate kinase; N-acetyl-L-glutamate kinas | 99.77 | |
| 2e9y_A | 316 | Carbamate kinase; transferase, structural genomics | 99.76 | |
| 2buf_A | 300 | Acetylglutamate kinase; acetyglutamate kinase, ADP | 99.75 | |
| 3k4o_A | 266 | Isopentenyl phosphate kinase; small molecule kinas | 99.75 | |
| 3kzf_A | 317 | Carbamate kinase; arginine dihydrolase pathway, gi | 99.73 | |
| 1e19_A | 314 | Carbamate kinase-like carbamoylphosphate synthetas | 99.73 | |
| 1gs5_A | 258 | Acetylglutamate kinase; carbamate kinase, amino ac | 99.72 | |
| 3d2m_A | 456 | Putative acetylglutamate synthase; protein-COA-Glu | 99.7 | |
| 2jjx_A | 255 | Uridylate kinase, UMP kinase; structural genomics, | 99.7 | |
| 4axs_A | 332 | Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm | 99.69 | |
| 3zzh_A | 307 | Acetylglutamate kinase; transferase, arginine bios | 99.64 | |
| 3k9d_A | 464 | LMO1179 protein, aldehyde dehydrogenase; structura | 99.64 | |
| 3s6g_A | 460 | N-acetylglutamate kinase / N-acetylglutamate SYNT; | 99.6 | |
| 3l86_A | 279 | Acetylglutamate kinase; ARGB, amino-acid biosynthe | 99.58 | |
| 3s6k_A | 467 | Acetylglutamate kinase; synthase, transferase; 2.8 | 99.55 | |
| 3c1m_A | 473 | Probable aspartokinase; allosteric inhibition, thr | 99.54 | |
| 4ab7_A | 464 | Protein Arg5,6, mitochondrial; transferase, argini | 99.54 | |
| 3ab4_A | 421 | Aspartokinase; aspartate kinase, concerted inhibit | 99.52 | |
| 3l76_A | 600 | Aspartokinase; allostery, ACT domains, kinase tran | 99.51 | |
| 1vlu_A | 468 | Gamma-glutamyl phosphate reductase; YOR323C, struc | 99.49 | |
| 3tvi_A | 446 | Aspartokinase; structural genomics, ACT domains, r | 99.48 | |
| 2j0w_A | 449 | Lysine-sensitive aspartokinase 3; feedback inhibit | 99.48 | |
| 2cdq_A | 510 | Aspartokinase; aspartate kinase, amino acid metabo | 99.48 | |
| 3ros_A | 484 | NAD-dependent aldehyde dehydrogenase; nysgrc, PSI- | 99.4 | |
| 1o20_A | 427 | Gamma-glutamyl phosphate reductase; TM0293, struct | 99.38 | |
| 2h5g_A | 463 | Delta 1-pyrroline-5-carboxylate synthetase; dehydr | 99.36 | |
| 3k2w_A | 497 | Betaine-aldehyde dehydrogenase; structural genomic | 99.36 | |
| 4ghk_A | 444 | Gamma-glutamyl phosphate reductase; structural gen | 99.36 | |
| 3my7_A | 452 | Alcohol dehydrogenase/acetaldehyde dehydrogenase; | 99.34 | |
| 3rh9_A | 506 | Succinate-semialdehyde dehydrogenase (NAD(P)(+)); | 99.34 | |
| 4e4g_A | 521 | Methylmalonate-semialdehyde dehydrogenase; structu | 99.32 | |
| 3r31_A | 517 | BADH, betaine aldehyde dehydrogenase; structural g | 99.32 | |
| 3lns_A | 457 | Benzaldehyde dehydrogenase; oxidoreductase, NADP+, | 99.31 | |
| 2ve5_A | 490 | BADH, betaine aldehyde dehydrogenase; aldehyde oxi | 99.3 | |
| 3prl_A | 505 | NADP-dependent glyceraldehyde-3-phosphate dehydro; | 99.3 | |
| 2w8n_A | 487 | Succinate-semialdehyde dehydrogenase, mitochondria | 99.27 | |
| 3ju8_A | 490 | Succinylglutamic semialdehyde dehydrogenase; alpha | 99.26 | |
| 1wnd_A | 495 | Putative betaine aldehyde dehydrogenase; NADH, flu | 99.26 | |
| 1uzb_A | 516 | 1-pyrroline-5-carboxylate dehydrogenase; oxidoredu | 99.25 | |
| 2d4e_A | 515 | 5-carboxymethyl-2-hydroxymuconate semialdehyde deh | 99.24 | |
| 3ty7_A | 478 | Putative aldehyde dehydrogenase SAV2122; structura | 99.24 | |
| 3v4c_A | 528 | Aldehyde dehydrogenase (NADP+); structural genomic | 99.24 | |
| 3jz4_A | 481 | Succinate-semialdehyde dehydrogenase [NADP+]; tetr | 99.22 | |
| 3etf_A | 462 | Putative succinate-semialdehyde dehydrogenase; cen | 99.21 | |
| 2imp_A | 479 | Lactaldehyde dehydrogenase; protein-lactate-NADH t | 99.21 | |
| 3r64_A | 508 | NAD dependent benzaldehyde dehydrogenase; structur | 99.2 | |
| 1bxs_A | 501 | Aldehyde dehydrogenase; retinal, class 1, tetramer | 99.19 | |
| 1a4s_A | 503 | ALDH, betaine aldehyde dehydrogenase; oxidoreducta | 99.18 | |
| 1ez0_A | 510 | ALDH, aldehyde dehydrogenase; nucleotide binding d | 99.18 | |
| 1o04_A | 500 | Aldehyde dehydrogenase, mitochondrial precursor; A | 99.18 | |
| 3pqa_A | 486 | Lactaldehyde dehydrogenase; structural genomics, p | 99.18 | |
| 1t90_A | 486 | MMSDH, probable methylmalonate-semialdehyde dehydr | 99.18 | |
| 1euh_A | 475 | NADP dependent non phosphorylating glyceraldehyde- | 99.17 | |
| 3b4w_A | 495 | Aldehyde dehydrogenase; RV0223C-NAD complex, struc | 99.17 | |
| 1uxt_A | 501 | Glyceraldehyde-3-phosphate dehydrogenase (NADP+); | 99.14 | |
| 4dng_A | 485 | Uncharacterized aldehyde dehydrogenase ALDY; struc | 99.13 | |
| 3ek1_A | 504 | Aldehyde dehydrogenase; ssgcid, oxidoreductase, st | 99.13 | |
| 3u4j_A | 528 | NAD-dependent aldehyde dehydrogenase; PSI-biology, | 99.12 | |
| 3sza_A | 469 | Aldehyde dehydrogenase, dimeric NADP-preferring; A | 99.08 | |
| 3ifg_A | 484 | Succinate-semialdehyde dehydrogenase (NADP+); niai | 99.07 | |
| 3qan_A | 538 | 1-pyrroline-5-carboxylate dehydrogenase 1; proline | 99.02 | |
| 3haz_A | 1001 | Proline dehydrogenase; proline utilization A, PUTA | 98.99 | |
| 2j6l_A | 500 | Aldehyde dehydrogenase family 7 member A1; NAD, re | 98.99 | |
| 4f9i_A | 1026 | Proline dehydrogenase/delta-1-pyrroline-5-carboxy | 98.98 | |
| 3iwj_A | 503 | Putative aminoaldehyde dehydrogenase; rossmann fol | 98.95 | |
| 4f3x_A | 498 | Putative aldehyde dehydrogenase; structural genomi | 98.93 | |
| 2wme_A | 490 | BADH, betaine aldehyde dehydrogenase; aldehyde oxi | 98.9 | |
| 3i44_A | 497 | Aldehyde dehydrogenase; oxidoreductase, structural | 98.87 | |
| 3ed6_A | 520 | Betaine aldehyde dehydrogenase; structural genomic | 98.84 | |
| 2y53_A | 534 | Aldehyde dehydrogenase (BOX pathway); oxidoreducta | 98.83 | |
| 2o2p_A | 517 | Formyltetrahydrofolate dehydrogenase; aldehyde deh | 98.81 | |
| 4e3x_A | 563 | Delta-1-pyrroline-5-carboxylate dehydrogenase, mit | 98.67 | |
| 4h7n_A | 474 | Aldehyde dehydrogenase; structural genomics, PSI-b | 98.62 | |
| 1vlu_A | 468 | Gamma-glutamyl phosphate reductase; YOR323C, struc | 97.77 | |
| 1o20_A | 427 | Gamma-glutamyl phosphate reductase; TM0293, struct | 97.75 | |
| 4ghk_A | 444 | Gamma-glutamyl phosphate reductase; structural gen | 97.53 | |
| 2h5g_A | 463 | Delta 1-pyrroline-5-carboxylate synthetase; dehydr | 97.38 | |
| 3lns_A | 457 | Benzaldehyde dehydrogenase; oxidoreductase, NADP+, | 93.68 | |
| 3v4c_A | 528 | Aldehyde dehydrogenase (NADP+); structural genomic | 92.8 | |
| 3sza_A | 469 | Aldehyde dehydrogenase, dimeric NADP-preferring; A | 92.04 | |
| 1ez0_A | 510 | ALDH, aldehyde dehydrogenase; nucleotide binding d | 91.98 | |
| 3ros_A | 484 | NAD-dependent aldehyde dehydrogenase; nysgrc, PSI- | 91.57 | |
| 2imp_A | 479 | Lactaldehyde dehydrogenase; protein-lactate-NADH t | 91.38 | |
| 4dng_A | 485 | Uncharacterized aldehyde dehydrogenase ALDY; struc | 91.16 | |
| 2y53_A | 534 | Aldehyde dehydrogenase (BOX pathway); oxidoreducta | 91.15 | |
| 3k9d_A | 464 | LMO1179 protein, aldehyde dehydrogenase; structura | 90.4 | |
| 3r64_A | 508 | NAD dependent benzaldehyde dehydrogenase; structur | 90.35 | |
| 2w8n_A | 487 | Succinate-semialdehyde dehydrogenase, mitochondria | 89.89 | |
| 2ve5_A | 490 | BADH, betaine aldehyde dehydrogenase; aldehyde oxi | 89.86 | |
| 3ty7_A | 478 | Putative aldehyde dehydrogenase SAV2122; structura | 89.45 | |
| 3r31_A | 517 | BADH, betaine aldehyde dehydrogenase; structural g | 89.35 | |
| 3k2w_A | 497 | Betaine-aldehyde dehydrogenase; structural genomic | 89.19 | |
| 1wnd_A | 495 | Putative betaine aldehyde dehydrogenase; NADH, flu | 89.1 | |
| 3ju8_A | 490 | Succinylglutamic semialdehyde dehydrogenase; alpha | 88.77 | |
| 1bxs_A | 501 | Aldehyde dehydrogenase; retinal, class 1, tetramer | 88.75 | |
| 3u4j_A | 528 | NAD-dependent aldehyde dehydrogenase; PSI-biology, | 88.73 | |
| 3prl_A | 505 | NADP-dependent glyceraldehyde-3-phosphate dehydro; | 88.6 | |
| 1uzb_A | 516 | 1-pyrroline-5-carboxylate dehydrogenase; oxidoredu | 88.54 | |
| 1o04_A | 500 | Aldehyde dehydrogenase, mitochondrial precursor; A | 88.27 | |
| 3jz4_A | 481 | Succinate-semialdehyde dehydrogenase [NADP+]; tetr | 88.12 | |
| 1euh_A | 475 | NADP dependent non phosphorylating glyceraldehyde- | 88.12 | |
| 3etf_A | 462 | Putative succinate-semialdehyde dehydrogenase; cen | 88.07 | |
| 1t90_A | 486 | MMSDH, probable methylmalonate-semialdehyde dehydr | 88.06 | |
| 4e4g_A | 521 | Methylmalonate-semialdehyde dehydrogenase; structu | 87.96 | |
| 2d4e_A | 515 | 5-carboxymethyl-2-hydroxymuconate semialdehyde deh | 87.73 | |
| 1a4s_A | 503 | ALDH, betaine aldehyde dehydrogenase; oxidoreducta | 87.49 | |
| 1uxt_A | 501 | Glyceraldehyde-3-phosphate dehydrogenase (NADP+); | 86.79 | |
| 3ifg_A | 484 | Succinate-semialdehyde dehydrogenase (NADP+); niai | 86.73 | |
| 3b4w_A | 495 | Aldehyde dehydrogenase; RV0223C-NAD complex, struc | 86.58 | |
| 3rh9_A | 506 | Succinate-semialdehyde dehydrogenase (NAD(P)(+)); | 86.49 | |
| 4e3x_A | 563 | Delta-1-pyrroline-5-carboxylate dehydrogenase, mit | 86.17 | |
| 3ek1_A | 504 | Aldehyde dehydrogenase; ssgcid, oxidoreductase, st | 86.02 | |
| 3i44_A | 497 | Aldehyde dehydrogenase; oxidoreductase, structural | 85.81 | |
| 3ed6_A | 520 | Betaine aldehyde dehydrogenase; structural genomic | 85.59 | |
| 2wme_A | 490 | BADH, betaine aldehyde dehydrogenase; aldehyde oxi | 85.32 | |
| 4f3x_A | 498 | Putative aldehyde dehydrogenase; structural genomi | 84.96 | |
| 3qan_A | 538 | 1-pyrroline-5-carboxylate dehydrogenase 1; proline | 84.09 | |
| 3pqa_A | 486 | Lactaldehyde dehydrogenase; structural genomics, p | 83.97 | |
| 4h7n_A | 474 | Aldehyde dehydrogenase; structural genomics, PSI-b | 83.79 | |
| 2o2p_A | 517 | Formyltetrahydrofolate dehydrogenase; aldehyde deh | 82.82 | |
| 3iwj_A | 503 | Putative aminoaldehyde dehydrogenase; rossmann fol | 82.25 | |
| 3my7_A | 452 | Alcohol dehydrogenase/acetaldehyde dehydrogenase; | 80.64 | |
| 2j6l_A | 500 | Aldehyde dehydrogenase family 7 member A1; NAD, re | 80.49 |
| >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-27 Score=243.03 Aligned_cols=176 Identities=24% Similarity=0.308 Sum_probs=110.0
Q ss_pred HhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccH--HhH
Q psy11677 15 TNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTS--EMR 80 (462)
Q Consensus 15 ~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~--~e~ 80 (462)
+.++.+++.+. ++|++|+|||++|+++|.+++||+|+|+|||||||++||+ +|++++|++++. .|+
T Consensus 119 ~~i~~LL~~g~IPIv~end~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~ 198 (367)
T 2j5v_A 119 DTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDAL 198 (367)
T ss_dssp HHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC---------------------------
T ss_pred HHHHHHHHCCCEEEECCCCceecccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHH
Confidence 45556666541 2557899999999999999999999999999999999998 899999999999 788
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCcHHHHHHHHHHHH
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAENVNLKM 160 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~~~~ia~~AK~As 160 (462)
.++++++++.+++|||.+|+++|..|+++|++++|+||+.|+.|.++|+|+..||+|.+...+ ..+|+
T Consensus 199 ~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~~~~----------~~~rk-- 266 (367)
T 2j5v_A 199 RAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATP----------LENRK-- 266 (367)
T ss_dssp ---------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCCSSC----------CCGGG--
T ss_pred HHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcCccc----------cchhh--
Confidence 888766667899999999999999999999999999999999999999999999999987653 22343
Q ss_pred HHHHHHHHHHHhCCchhhcCchhcHHHHHHHHhhccccccccccCCCCCCCCceeeEEE--EeCC
Q psy11677 161 EILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAEI--WKNE 223 (462)
Q Consensus 161 ~~L~~iA~aL~~~~~~IL~AN~~D~~~~~~~~~~~~i~t~~a~~~d~~~~~PlGVi~~I--yEsr 223 (462)
.|+ ..+..+|..++++++ .+.+.+. ..--.|.||+.+- |+..
T Consensus 267 ---~w~-~~~~~~G~v~vD~gA-----~~al~~~------------g~sLl~~Gi~~v~g~F~~g 310 (367)
T 2j5v_A 267 ---RWI-FGAPPAGEITVDEGA-----TAAILER------------GSSLLPKGIKSVTGNFSRG 310 (367)
T ss_dssp ---GGG-GTCCCSCEEEECHHH-----HHHHHHH------------CCCBCGGGEEEEESCCCTT
T ss_pred ---eee-eccCCCCEEEECcCH-----HHHHHhC------------CCccCCcccEEEECcccCC
Confidence 677 777788888888887 3566532 1235677887776 6555
|
| >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=195.13 Aligned_cols=110 Identities=30% Similarity=0.427 Sum_probs=96.3
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHH--hHHhhhhcCCCCCCCCcchHHHHHHHH
Q psy11677 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSE--MRDTVQFGQKSKVGTGGMDSKVNSATW 105 (462)
Q Consensus 29 i~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~--e~~~l~~~~~s~~gtGGM~~Kl~AA~~ 105 (462)
+.++|+|++|+.+|..++||+|+++|||||||++||+ +|++++|+++++. |+.+++.++++.+++|||.+|+++|..
T Consensus 137 ~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~ 216 (251)
T 2ako_A 137 IVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKF 216 (251)
T ss_dssp HHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHH
T ss_pred eeecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHH
Confidence 3588999999999999999999999999999999998 7999999999998 887776544567999999999999999
Q ss_pred HHHcCCeEEEEeCCChhHHHH--HHcCCccccccc
Q psy11677 106 ALDRGVSVVICNGMQKEAIKQ--IVAGRKIGTFFT 138 (462)
Q Consensus 106 a~~~Gv~v~I~sG~~~~~L~~--~l~g~~~GT~I~ 138 (462)
|+++|++++|+||+.|+.|.+ +|+|++.||+|.
T Consensus 217 a~~~gv~v~I~~g~~~~~l~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 217 LLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE 251 (251)
T ss_dssp HHHTTCEEEEEESSSCHHHHHHHHSCCCCSSEEEC
T ss_pred HHHCCCeEEEEeCCChhhhhhhHHhcCCCCceEeC
Confidence 999999999999999999999 999999999984
|
| >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-22 Score=194.98 Aligned_cols=126 Identities=22% Similarity=0.281 Sum_probs=97.7
Q ss_pred HHHhHHHHHHHHh------------c--CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccH
Q psy11677 13 FLTNFNELFRSIF------------Q--KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTS 77 (462)
Q Consensus 13 ~~~~~~e~~~~~~------------~--~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~ 77 (462)
.++.++.+++.+. . .+++++|+|++|+.+|..++||+|+++|||||||++||+ +|++++|+++++
T Consensus 125 ~~~~i~~lL~~g~ipVi~~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~ 204 (269)
T 3ll9_A 125 DISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGS 204 (269)
T ss_dssp CCHHHHHHHHTTCEEEEECEEEEBSCTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC
T ss_pred cHHHHHHHHHCCCEEEECCCEEecccccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCH
Confidence 3566788888762 2 347889999999999999999999999999999999998 899999999999
Q ss_pred HhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcc-ccccc
Q psy11677 78 EMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKI-GTFFT 138 (462)
Q Consensus 78 ~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~-GT~I~ 138 (462)
.|..+++.++++.+++|||.+|+++|..++++|++++|+||+.|+.|.++|+|+++ ||+|.
T Consensus 205 ~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 205 LDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp -------------------SHHHHHHHHHHHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred HHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 99877765444678999999999999999999999999999999999999999999 99997
|
| >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=187.29 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=103.7
Q ss_pred HHhHHHHHHHHh----cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCC
Q psy11677 14 LTNFNELFRSIF----QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQK 88 (462)
Q Consensus 14 ~~~~~e~~~~~~----~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~ 88 (462)
+++++++++.+. .++.+++|+|++|+.+|..++||+|+++|||||||++||+ +|++++|+++++.|+.++...
T Consensus 95 ~~~i~~ll~~g~ipVi~gg~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~-- 172 (226)
T 2j4j_A 95 LEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEG-- 172 (226)
T ss_dssp HHHHHHHHTTSSBEEECCCSTTSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC---
T ss_pred HHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhc--
Confidence 455666666652 3367899999999999999999999999999999999998 899999999999999887522
Q ss_pred CCCCCCcc--hHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 89 SKVGTGGM--DSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 89 s~~gtGGM--~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
+..++||| .+|++++..|.++|++++|+||+.|+.+.++|+|++.||+|.+
T Consensus 173 ~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 173 SQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp ---------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred CCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 25778999 9999999999999999999999999999999999999999975
|
| >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-20 Score=185.66 Aligned_cols=121 Identities=24% Similarity=0.316 Sum_probs=105.2
Q ss_pred HHhHHHHHHHHh----------cCCcccc-ChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF----------QKLISIK-DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~----------~~ei~~g-dnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
++.++++++.+. ..+-.|+ |+|++|+.+|..++||+|+|+|||||||++||+ | +++|+++++.|+.+
T Consensus 165 ~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~-~-a~~i~~is~~e~~~ 242 (298)
T 2rd5_A 165 PSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED-P-SSLIKEIDIKGVKK 242 (298)
T ss_dssp GGGHHHHHHTTCEEEEESEEECTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC-T-TSEECEEEHHHHHH
T ss_pred HHHHHHHHhCCCEEEEcCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC-C-CCCcccCCHHHHHH
Confidence 566778888772 1122344 999999999999999999999999999999997 4 89999999999988
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCCe-EEEEeCCChhHH-HHHHcCCcccccccc
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGVS-VVICNGMQKEAI-KQIVAGRKIGTFFTD 139 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~-v~I~sG~~~~~L-~~~l~g~~~GT~I~~ 139 (462)
+.. ...++|||.+|+++|..++++|++ ++|+||+.|+.| .++|+|++.||+|.+
T Consensus 243 ~~~---~g~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 243 MIE---DGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp HHH---TTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred HHH---CCCCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 763 347899999999999999999995 999999999997 899999999999964
|
| >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-20 Score=182.88 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=106.9
Q ss_pred hHHHhHHHHHHHHh----------cCCcccc-ChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhH
Q psy11677 12 HFLTNFNELFRSIF----------QKLISIK-DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR 80 (462)
Q Consensus 12 ~~~~~~~e~~~~~~----------~~ei~~g-dnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~ 80 (462)
..++.++++++.+. ..+-.+. |+|++|+.+|..++||+|+|+|||||||++||+ ++++|+++++.|+
T Consensus 157 v~~~~i~~lL~~g~IpVv~~v~~~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~--~~~~i~~is~~e~ 234 (299)
T 2ap9_A 157 VNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD--RDSLVSEIDTGTL 234 (299)
T ss_dssp ECHHHHHHHHHTTCEEEEESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC--TTCEESEEEHHHH
T ss_pred ecHHHHHHHHhCCCeEEECCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC--CCcChhhcCHHHH
Confidence 34566777777762 1122344 999999999999999999999999999999997 4799999999999
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHcCCe-EEEEeCCChhHH-HHHHcCCccccccccCCC
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDRGVS-VVICNGMQKEAI-KQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~-v~I~sG~~~~~L-~~~l~g~~~GT~I~~~~~ 142 (462)
.+++. +++|||.+|+++|..++++|++ ++|+||+.|+.| .++|+|+++||+|.+++.
T Consensus 235 ~~l~~-----~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~~~ 293 (299)
T 2ap9_A 235 AQLLP-----TLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRGEG 293 (299)
T ss_dssp HHHGG-----GSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECCCS
T ss_pred HHHHH-----hhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecCCC
Confidence 88852 7899999999999999999996 999999999985 999999999999997653
|
| >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-20 Score=182.67 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=101.9
Q ss_pred hhhhhHHHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhH
Q psy11677 8 LCEQHFLTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMR 80 (462)
Q Consensus 8 ~~~~~~~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~ 80 (462)
.++++.+.+..++++.+. ..+++|+|||++|+++|..++||+|+++|||||||++||+ +|++++|+++++.|.
T Consensus 153 ~~~~~~~~~~l~lL~~g~IpVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~ 232 (281)
T 3nwy_A 153 VAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREV 232 (281)
T ss_dssp GSEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHH
T ss_pred cccccchHHHHHHHHcCCeEEEECCCCCCCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHH
Confidence 345555555557777762 3468999999999999999999999999999999999998 899999999999876
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.+ .|+|..|+.++..|.++|++++|+||+.|+.|.++|+|+++||+|.
T Consensus 233 ~~----------~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 233 LD----------RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp HT----------TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred HH----------cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 43 2567789999999999999999999999999999999999999986
|
| >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=183.27 Aligned_cols=123 Identities=24% Similarity=0.318 Sum_probs=106.7
Q ss_pred HHhHHHHHHHHhc--------CCc--ccc-ChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIFQ--------KLI--SIK-DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~~--------~ei--~~g-dnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
++.++++++.+.. ++. .|+ |+|++|+.+|..++||+|+|+|||||||++||+ ++++|+++++.|+.+
T Consensus 177 ~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~--~a~~i~~is~~e~~~ 254 (321)
T 2v5h_A 177 SEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR--PESLIPRLNIPQSRE 254 (321)
T ss_dssp GGGTHHHHHTTCEEEEESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC--TTCBCCEEEHHHHHH
T ss_pred HHHHHHHHHCCCeEEEeCceECCCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC--CCeeeeEEcHHHHHH
Confidence 5667788887731 222 566 999999999999999999999999999999997 589999999999988
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCCe-EEEEeCCChhHH-HHHHcCCccccccccCC
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGVS-VVICNGMQKEAI-KQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~-v~I~sG~~~~~L-~~~l~g~~~GT~I~~~~ 141 (462)
++. ...++|||.+|+++|..|+++|++ ++|+||+.|+.| .++|+|++.||+|.+++
T Consensus 255 l~~---~g~~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~~ 312 (321)
T 2v5h_A 255 LIA---QGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSG 312 (321)
T ss_dssp HHH---TTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC-
T ss_pred HHh---CCCCcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECCc
Confidence 763 347899999999999999999996 999999999986 89999999999998764
|
| >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.9e-20 Score=175.36 Aligned_cols=115 Identities=18% Similarity=0.229 Sum_probs=100.9
Q ss_pred HhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcC
Q psy11677 15 TNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQ 87 (462)
Q Consensus 15 ~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~ 87 (462)
.+..++++.+. ..+++|+|||++|+++|..++||+|+|+|||||||++||+ +|++++|+++++.|+.++
T Consensus 118 ~~~~~ll~~g~ipVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---- 193 (239)
T 1ybd_A 118 PKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---- 193 (239)
T ss_dssp HHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT----
T ss_pred HHHHHHHhCCcEEEEECCccCCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh----
Confidence 34446666662 3567899999999999999999999999999999999998 899999999999988664
Q ss_pred CCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 88 ~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
+.++| |++++..|.++|++++|+||+.|+.|.++|+|+++||+|.+
T Consensus 194 ----g~~~m--~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 194 ----NLKVM--DATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp ----TCCSS--CHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred ----ccccc--CHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 34778 67799999999999999999999999999999999999964
|
| >3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=176.57 Aligned_cols=121 Identities=25% Similarity=0.238 Sum_probs=106.3
Q ss_pred hhhhHHHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHH
Q psy11677 9 CEQHFLTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRD 81 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~ 81 (462)
+++..++++.++++.+. ..+++|+|||++|+++|..++||+|+++|||||||++||+ +|++++|+++++.|+.
T Consensus 114 ~~~~~~~~~~~lL~~g~IpVv~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~ 193 (243)
T 3ek6_A 114 CEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVI 193 (243)
T ss_dssp BEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHH
T ss_pred cCcCCHHHHHHHHHCCcEEEEECCCCCCcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHH
Confidence 44555677888888873 3457899999999999999999999999999999999998 8999999999998875
Q ss_pred hhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 82 TVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 82 ~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
+. +.++| |+.++..|.++|++++|+||+.|+.|.++|+|+++||+|.+
T Consensus 194 ~~--------g~~~~--~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 194 MQ--------GLEVM--DTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp HH--------TCCSS--CHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred hC--------CchhH--HHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 52 23455 67899999999999999999999999999999999999987
|
| >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-20 Score=179.03 Aligned_cols=125 Identities=19% Similarity=0.189 Sum_probs=99.9
Q ss_pred HHHhHHHHHHHHh----cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcC
Q psy11677 13 FLTNFNELFRSIF----QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQ 87 (462)
Q Consensus 13 ~~~~~~e~~~~~~----~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~ 87 (462)
-++.++++++.+. .++++|+|||++|+++|..++||+|+|+|||||||++||+ +|++++|+++++.|+.++...
T Consensus 114 ~~~~i~~lL~~g~IpVi~gg~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~- 192 (244)
T 2brx_A 114 DFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGK- 192 (244)
T ss_dssp SHHHHHHHHHTTCBCEECCCSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC-
T ss_pred CHHHHHHHHhCCCEEEEcCCCCCCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhc-
Confidence 3556777777763 3367899999999999999999999999999999999998 899999999999999877532
Q ss_pred CCCCCCCcchHHHHHHHH-HHHcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 88 KSKVGTGGMDSKVNSATW-ALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 88 ~s~~gtGGM~~Kl~AA~~-a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
....+|||..|..+|.. +.+.|++++|+||+.|+.|.++|+|++.||+|.+
T Consensus 193 -~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 244 (244)
T 2brx_A 193 -GIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP 244 (244)
T ss_dssp ---------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred -cCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence 13457887666655554 5556889999999999999999999999999974
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=179.31 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=109.6
Q ss_pred hhhhHHHhHHHHHHHHh-----c-----------CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC---CCCC
Q psy11677 9 CEQHFLTNFNELFRSIF-----Q-----------KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW---EEGA 69 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~~~-----~-----------~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~---~p~A 69 (462)
+..+.++.++.+++.+. . ..+++++||++|+++|..++||+|+++|||||||++||+ +|++
T Consensus 129 ~~~~~~~~i~~lL~~g~IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a 208 (276)
T 2ogx_A 129 EHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQA 208 (276)
T ss_dssp CHHHHHHHHHHHHHHSSEEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGC
T ss_pred cccChHHHHHHHHhCCCEEEEcCCcccccccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCC
Confidence 34556677888888772 1 124899999999999999999999999999999999995 7899
Q ss_pred cccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 70 KMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 70 klI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
++|+++++.|+.++. ++|||.+|+.++..+.+.|++++|+||+.|+.|.++|+|++.||+|.+++.
T Consensus 209 ~~i~~i~~~e~~~~~-------g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~ 274 (276)
T 2ogx_A 209 RFLPETSATDLAKSE-------GPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVR 274 (276)
T ss_dssp CEESEEEHHHHHTSC-------SCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECSCC
T ss_pred eEcceeCHHHHHHHh-------CcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccCCC
Confidence 999999999887763 689999999887776677889999999999999999999999999987654
|
| >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-19 Score=176.06 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=97.2
Q ss_pred HHHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEec-CcccccCCCC-CCCCcccccccHHhHHhhh
Q psy11677 13 FLTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSD-VNGIYTKAPW-EEGAKMIWTYTSEMRDTVQ 84 (462)
Q Consensus 13 ~~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTD-VdGVY~~dP~-~p~AklI~~I~~~e~~~l~ 84 (462)
...+.+++++.+. ..+++|+|||++|+++|..++||+|+++|| |||||++||+ +|++++|+++++.|+.++.
T Consensus 132 ~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~~ 211 (256)
T 2va1_A 132 SANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQN 211 (256)
T ss_dssp CHHHHHHHHHTTCEEEEESTTSSSSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHHT
T ss_pred hHHHHHHHHhCCcEEEEECCCCCCCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHhc
Confidence 3345567777763 457899999999999999999999999999 9999999998 8999999999999987761
Q ss_pred hcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 85 FGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 85 ~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.||| |++++..|.+.|++++|+||+.|+.|.++|+|++.||+|.
T Consensus 212 --------~~~m--k~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 212 --------LKVM--DATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp --------CCSS--CHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred --------cCCc--cHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 3788 9999999999999999999999999999999999999986
|
| >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=174.24 Aligned_cols=117 Identities=23% Similarity=0.263 Sum_probs=103.1
Q ss_pred HhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEe-cCcccccCCCC-CCCCcccccccHHhHHhhhhc
Q psy11677 15 TNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMS-DVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFG 86 (462)
Q Consensus 15 ~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLT-DVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~ 86 (462)
.+++++++.+. ..+++++|||++|+++|..++||+|+|+| ||||||++||+ +|++++|+++++.|+.+.
T Consensus 118 ~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~~--- 194 (252)
T 1z9d_A 118 GRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKR--- 194 (252)
T ss_dssp HHHHHHHHTTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHTT---
T ss_pred HHHHHHHhCCCEEEEeCCcCCCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHhc---
Confidence 44566777662 34678999999999999999999999999 99999999998 899999999999887652
Q ss_pred CCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 87 QKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 87 ~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
+.++| |++++..|.+.|++++|+||+.|+.|.++|+|++.||+|.++.
T Consensus 195 -----~~~~m--k~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 242 (252)
T 1z9d_A 195 -----GLKIM--DATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV 242 (252)
T ss_dssp -----TCCCS--CHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred -----ccccc--CHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence 34788 8889999999999999999999999999999999999998754
|
| >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=170.55 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=99.3
Q ss_pred HHHhHHHHHHHHh----cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcC
Q psy11677 13 FLTNFNELFRSIF----QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQ 87 (462)
Q Consensus 13 ~~~~~~e~~~~~~----~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~ 87 (462)
.++.++++++.+. .++.+|+|+|++|+.+|..++||+|+++|||||||++||+ +|++++|+++++.|+.++....
T Consensus 91 ~~~~i~~ll~~g~ipVi~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~ 170 (219)
T 2ij9_A 91 DFMEAEELSKLYRVVVMGGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRS 170 (219)
T ss_dssp SHHHHHHHHTTCSEEEECCCSSSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-
T ss_pred CHHHHHHHHHCCCEEEEeCCCCCCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcC
Confidence 3555667777662 3367899999999999999999999999999999999998 8999999999999998875321
Q ss_pred CCCCCCCcchHHH-HHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 88 KSKVGTGGMDSKV-NSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 88 ~s~~gtGGM~~Kl-~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+..+|||..|. .++..+.+.|++++|+|| .|+.|.++|+|++.||+|.
T Consensus 171 --g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 171 --SAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp ------CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred --CCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 23467765554 455556667889999999 9999999999999999984
|
| >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=174.56 Aligned_cols=118 Identities=22% Similarity=0.261 Sum_probs=97.2
Q ss_pred HhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcC
Q psy11677 15 TNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQ 87 (462)
Q Consensus 15 ~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~ 87 (462)
.+++++++.+. ..+++|+|||++|+.+|..++||+|+|+|||||||++||+ +|++++|+++++.|+.++
T Consensus 119 ~~~~~ll~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~---- 194 (247)
T 2a1f_A 119 SEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---- 194 (247)
T ss_dssp HHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHT----
T ss_pred HHHHHHHhCCCEEEEeCCcCCCCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHc----
Confidence 44566777662 3467899999999999999999999999999999999998 899999999999988764
Q ss_pred CCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 88 KSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 88 ~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
+.++| |++++..|.+.|++++|+||+.|+.+.++++|+.+||+|....+
T Consensus 195 ----g~~~m--~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~~~ 243 (247)
T 2a1f_A 195 ----ELKVM--DLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEGHH 243 (247)
T ss_dssp ----TCCSS--CHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC--
T ss_pred ----Ccccc--CHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEeeccc
Confidence 34778 67799999999999999999999999999999999999987654
|
| >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-20 Score=178.34 Aligned_cols=121 Identities=23% Similarity=0.322 Sum_probs=94.3
Q ss_pred HHHhHHHHHHHHhc------------CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHh
Q psy11677 13 FLTNFNELFRSIFQ------------KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEM 79 (462)
Q Consensus 13 ~~~~~~e~~~~~~~------------~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e 79 (462)
.++.++.+++.+.. .++.++|+|++|+.+|..++||+|+|+|||||||++||+ +|++++|++++. +
T Consensus 114 ~~~~i~~ll~~g~ipVi~~~~~~~~~~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~~-~ 192 (249)
T 3ll5_A 114 DYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDT-N 192 (249)
T ss_dssp CCHHHHHHHHTTCEEEEECEEEEEETTEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEECC-C
T ss_pred cHHHHHHHHHCCCEEEECCCEEEcCCCceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHHH-H
Confidence 45667788887621 234589999999999999999999999999999999997 899999999942 2
Q ss_pred HHhhhhcCCCCCCCCcchHHHHHHHHH-HHcCCeEEEEeCCChhHHHHHHcCCcc-ccccc
Q psy11677 80 RDTVQFGQKSKVGTGGMDSKVNSATWA-LDRGVSVVICNGMQKEAIKQIVAGRKI-GTFFT 138 (462)
Q Consensus 80 ~~~l~~~~~s~~gtGGM~~Kl~AA~~a-~~~Gv~v~I~sG~~~~~L~~~l~g~~~-GT~I~ 138 (462)
+. ....+.+++|||.+|+++|..+ +++|++++|+||+.|+.|.+ |.|+++ ||+|.
T Consensus 193 ~~---~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~~GT~i~ 249 (249)
T 3ll5_A 193 IT---FDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGD-IGKESFIGTVIR 249 (249)
T ss_dssp C----------------HHHHHHHHHHHTTCTTCEEEEETTSGGGGGG-TTSTTCCSEEEC
T ss_pred Hh---cccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCChhHHHH-hCCCCCCCEEeC
Confidence 21 2234568899999999999999 89999999999999999888 999988 99984
|
| >4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-19 Score=172.20 Aligned_cols=119 Identities=23% Similarity=0.250 Sum_probs=103.1
Q ss_pred hhhhHHHhHHHHHHHHh------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHH
Q psy11677 9 CEQHFLTNFNELFRSIF------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRD 81 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~~~------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~ 81 (462)
|++..++++.++++.+. ..+.+|+|||++|+++|..++||+|+++|||||||++||+ +|++++|+++++.|+.
T Consensus 113 ~~~~~~~~i~~lL~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~ 192 (240)
T 4a7w_A 113 CESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDAL 192 (240)
T ss_dssp SEECCHHHHHHHHHTTCEEEEESTTSCTTSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHH
T ss_pred cCcCcHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHH
Confidence 44455677788888762 3457899999999999999999999999999999999998 8999999999998876
Q ss_pred hhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCC-cccccc
Q psy11677 82 TVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGR-KIGTFF 137 (462)
Q Consensus 82 ~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~-~~GT~I 137 (462)
+. +.++| |++++..|.++|++++|+||+.|+.|.+++.|+ ++||+|
T Consensus 193 ~~--------g~~~m--~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 193 IG--------DIEVM--DDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp HS--------SCCSS--CHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred hc--------Ccccc--HHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 52 46788 578999999999999999999999988888766 689987
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-19 Score=175.29 Aligned_cols=106 Identities=22% Similarity=0.292 Sum_probs=94.3
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHH
Q psy11677 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWA 106 (462)
Q Consensus 28 ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a 106 (462)
+++++|||++|+++|..++||+|+++|||||||++||+ +|++++|+++++.|+.++..+ ++ ...|||.+|+++|.
T Consensus 163 ~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~-g~-~~~ggm~~kl~aa~-- 238 (270)
T 2ogx_B 163 VIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLH-DS-ILEFPVLDLLQSAQ-- 238 (270)
T ss_dssp SSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCC-CT-TSCHHHHHHHHHCS--
T ss_pred cCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcC-CC-cccHHHHHHHHHhh--
Confidence 36789999999999999999999999999999999997 899999999999999887632 22 34489999999875
Q ss_pred HHcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 107 LDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 107 ~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
.+++++|+||+.|+.|.++|+|++.||+|.+
T Consensus 239 --~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 239 --HVREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp --SCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred --cCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 4579999999999999999999999999975
|
| >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-20 Score=181.81 Aligned_cols=126 Identities=16% Similarity=0.203 Sum_probs=101.5
Q ss_pred HHHhHHHHHHHHh----------cCC--ccccChHHHHHHHHHH-cCCCeEEEEecCcccccCCCCCCCCcccccccHHh
Q psy11677 13 FLTNFNELFRSIF----------QKL--ISIKDNDSLAAMLAAE-IQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEM 79 (462)
Q Consensus 13 ~~~~~~e~~~~~~----------~~e--i~~gdnD~lAa~lA~~-l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e 79 (462)
.++.++++++.+. .++ +.++|+|++|+++|.. ++||+|+|+|||||||++||+ ++++|+++++.|
T Consensus 136 ~~~~i~~lL~~g~IpVi~gd~~~~~~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~--~a~~i~~is~~e 213 (286)
T 3d40_A 136 RSEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG--GDTILPEVDARS 213 (286)
T ss_dssp CCSHHHHHHHTTCEEEEECEEEEBTTSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC-----CEECCEEETTS
T ss_pred hHHHHHHHHHCcCEEEEcCCeEEcCCCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC--CCcCCcccCHHH
Confidence 3456777777762 122 3679999999999999 999999999999999999998 799999999976
Q ss_pred HH---hhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcC-----Ccc-ccccccC
Q psy11677 80 RD---TVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAG-----RKI-GTFFTDA 140 (462)
Q Consensus 80 ~~---~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g-----~~~-GT~I~~~ 140 (462)
.+ ++.+.+++.+++|||.+|+++|..++++|++++|+||+.|+.|.++|++ +.+ ||.|..+
T Consensus 214 ~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~ 283 (286)
T 3d40_A 214 PEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT 283 (286)
T ss_dssp CHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC-
T ss_pred HHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeec
Confidence 54 4344455678999999999999999999999999999999999999999 776 9999754
|
| >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-19 Score=178.10 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=102.3
Q ss_pred HHHhHHHHHHHHh-----------------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccc
Q psy11677 13 FLTNFNELFRSIF-----------------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTY 75 (462)
Q Consensus 13 ~~~~~~e~~~~~~-----------------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I 75 (462)
.++.++.+++.+. .+++.|+|+|++|+.+|..++||+|+|+|||||||+ ||.+|++++|+++
T Consensus 171 ~~~~i~~lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~~~~a~~i~~i 249 (310)
T 2we5_A 171 EAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI-NYGKPDEKQLTNV 249 (310)
T ss_dssp THHHHHHHHHTTCEEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-STTSTTCEECCEE
T ss_pred hHHHHHHHHHCCCEEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCCCCCCeECCEE
Confidence 4566777777763 123455899999999999999999999999999999 7888999999999
Q ss_pred cHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCC--eEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 76 TSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGV--SVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 76 ~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv--~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
+..|+.++... +.+++|||.+|+++|..++++|+ +++|++ ++.|.++|+|++.||+|.
T Consensus 250 ~~~e~~~~~~~--g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 250 TVAELEEYKQA--GHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp EHHHHHHHHHT--TCSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCCSEEEE
T ss_pred cHHHHHHHhhC--CCCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCCCeEEe
Confidence 99999888633 34677999999999999999999 899997 456889999998999986
|
| >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=171.63 Aligned_cols=119 Identities=31% Similarity=0.386 Sum_probs=102.1
Q ss_pred HHhHHHHHHHHhc----------CCccc-cChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIFQ----------KLISI-KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~~----------~ei~~-gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
++.++++++.+.. .+-.| .|+|++|+.+|..++||+|+++|||||||++ | ++|+++++.|+.+
T Consensus 150 ~~~i~~ll~~g~IpVi~~v~~~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~----~--~~i~~i~~~e~~~ 223 (282)
T 2bty_A 150 PEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD----G--KLISTLTPDEAEE 223 (282)
T ss_dssp THHHHHHHHTTCEEEEESEEECSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET----T--EECCEECHHHHHH
T ss_pred HHHHHHHHHCCCEEEECCCccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC----c--hhhhhCCHHHHHH
Confidence 5667777777621 12234 4999999999999999999999999999996 3 9999999999988
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCCe-EEEEeCCChhHH-HHHHcCCccccccccCC
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGVS-VVICNGMQKEAI-KQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~-v~I~sG~~~~~L-~~~l~g~~~GT~I~~~~ 141 (462)
+.. ...++|||.+|+++|..++++|++ ++|+||+.|+.| .++|+|++.||+|.+++
T Consensus 224 ~~~---~g~~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~~ 281 (282)
T 2bty_A 224 LIR---DGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKELE 281 (282)
T ss_dssp HHT---TTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCCC
T ss_pred HHH---cCCCCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeCC
Confidence 762 357899999999999999999996 999999999997 89999999999998754
|
| >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=174.50 Aligned_cols=100 Identities=25% Similarity=0.336 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCC-
Q psy11677 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGV- 111 (462)
Q Consensus 33 dnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv- 111 (462)
|+|++|+.+|..++||+|+|+|||||||+ ||.+|++++|++++..|+.++... +.+++|||.+|+++|..++++|+
T Consensus 215 d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~~p~a~~i~~i~~~e~~~~~~~--g~~~~GgM~~Kv~aa~~a~~~gv~ 291 (316)
T 2e9y_A 215 DKDLASSLLATQLNADLLVILTDVPGVAV-NYGREGERWLRRAAASELKKYLRE--GHFPPGSMGPKVEAAISFVERTGK 291 (316)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTTSTTCEECSEEEHHHHHHHHHT--TCSCTTTHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCCCCCCcCCcEEcHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999 788899999999999999888642 45788999999999999999999
Q ss_pred eEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 112 SVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 112 ~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
+++|++ ++.|.++|+| +.||+|.+
T Consensus 292 ~v~I~~---~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 292 PAVIGS---LEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp CEEEEE---STTHHHHHTT-SSSEEEEC
T ss_pred eEEECc---HHHHHHHHcC-CCCeEEec
Confidence 999997 4559999998 79999975
|
| >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-18 Score=170.74 Aligned_cols=120 Identities=23% Similarity=0.340 Sum_probs=102.8
Q ss_pred HHhHHHHHHHHhc--------CC--cccc-ChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIFQ--------KL--ISIK-DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~~--------~e--i~~g-dnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
++.++++++.+.. ++ -.|+ |+|++|+++|..++||+|+++|||||||++ ++++|+++++.|+.+
T Consensus 166 ~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~-----~a~~i~~i~~~e~~~ 240 (300)
T 2buf_A 166 VGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK-----QGQVLTGLSTEQVNE 240 (300)
T ss_dssp HHHHHHHHHTTCEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT-----TSCBCCEECHHHHHH
T ss_pred HHHHHHHHHCCCEEEEcCceeCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC-----CCcChhhCCHHHHHH
Confidence 5567777777621 22 2445 999999999999999999999999999996 489999999999988
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCCe-EEEEeCCChhHH-HHHHcCCccccccccCC
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGVS-VVICNGMQKEAI-KQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~-v~I~sG~~~~~L-~~~l~g~~~GT~I~~~~ 141 (462)
+.. +..++|||.+|+++|..++++|++ ++|+||+.|+.| .++|+|++.||+|.+++
T Consensus 241 ~~~---~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~~ 298 (300)
T 2buf_A 241 LIA---DGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNRK 298 (300)
T ss_dssp HHH---TTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECCC
T ss_pred HHH---cCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeCC
Confidence 763 356799999999999999999996 999999999986 89999999999998754
|
| >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=170.21 Aligned_cols=119 Identities=23% Similarity=0.242 Sum_probs=100.8
Q ss_pred HHHhHHHHHHHHh------------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhH
Q psy11677 13 FLTNFNELFRSIF------------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMR 80 (462)
Q Consensus 13 ~~~~~~e~~~~~~------------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~ 80 (462)
.++.++.+++.+. ..+++++|+|++|+++|..++||+|+++||||||| .|| +++++++..++
T Consensus 132 ~~~~i~~lL~~g~ipVi~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~-----~~i~~~~~~e~ 205 (266)
T 3k4o_A 132 DTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVL-IDN-----KPIKRIDKNNI 205 (266)
T ss_dssp CCHHHHHHHHTTCEEEEECEEEEESSSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSS-----SBCSEECTTTH
T ss_pred cHHHHHHHHHCCCEEEEeCCEEEcCCCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCC-----eecCcCCHHHH
Confidence 3567788888762 22478899999999999999999999999999999 654 67888876554
Q ss_pred H---hhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 81 D---TVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 81 ~---~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
. +..+++.+.+++|||.+|+++|..+++ +++|+||+.|+.|.++|+|+++||+|.+.
T Consensus 206 ~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 206 YKILNYLSGSNSIDVTGGMKYKIEMIRKNKC---RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp HHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHHHHHhccccCCcccCCHHHHHHHHHHHhc---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 4 334556678999999999999998887 99999999999999999999999999875
|
| >3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-18 Score=171.08 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=90.0
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
++|+|++|+.+|..++||+|||+|||||||+ ||++|++++|++++..|+.+++. .+.+++|||.+|+++|..+++.|
T Consensus 214 ~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~~p~a~~I~~it~~e~~~li~--~g~~~~GGM~pKl~AA~~av~~g 290 (317)
T 3kzf_A 214 VIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYKKPDERKLEEIKLSEILALEK--DGHFAAGSMGPKVRAAIEFTQAT 290 (317)
T ss_dssp CCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSSCSSCEECCEEEHHHHHHHHT--TTSCC--CCHHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCCCCCCeECcCcCHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHcC
Confidence 5679999999999999999999999999999 89889999999999999988874 34578999999999999998865
Q ss_pred C-eEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 111 V-SVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 111 v-~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
+ +++|+|+ +.+.++|+|+ .||+|.++
T Consensus 291 g~~v~I~s~---~~l~~~l~G~-~GT~I~~d 317 (317)
T 3kzf_A 291 GKMSIITSL---STAVDALNGK-CGTRIIKD 317 (317)
T ss_dssp CCCEEECCG---GGHHHHHTTS-SSEEEECC
T ss_pred CCeEEEcch---HHHHHHHCCC-CCeEEecC
Confidence 5 9999996 4577999998 89999863
|
| >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=168.66 Aligned_cols=102 Identities=25% Similarity=0.294 Sum_probs=89.7
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc-
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR- 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~- 109 (462)
|+|+|++|+.+|..++||+|+++|||||||++|| +|++++|+++++.|+.+++.. +.+++|||.+|+++|..+++.
T Consensus 212 ~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p-~~~a~~i~~i~~~e~~~~~~~--g~~~~GgM~~Kv~aa~~~~~~~ 288 (314)
T 1e19_A 212 VIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG-TEKEQWLREVKVEELRKYYEE--GHFKAGSMGPKVLAAIRFIEWG 288 (314)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT-STTCEECCEEEHHHHHHHHHT--TCSCTTTHHHHHHHHHHHHHHT
T ss_pred eccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC-CCCCeECCEECHHHHHHHHhC--CCcCCCChHHHHHHHHHHHHhC
Confidence 5888999999999999999999999999999998 689999999999999888643 457889999999999886665
Q ss_pred CCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
+++++|+++ +.|.++|+| +.||+|.+
T Consensus 289 ~~~v~I~~~---~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 289 GERAIIAHL---EKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp CSEEEEEEG---GGHHHHHTT-SSSEEEEC
T ss_pred CCeEEEecH---HHHHHHHcC-CCCeEEcC
Confidence 569999985 458899998 58999964
|
| >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-18 Score=163.61 Aligned_cols=120 Identities=28% Similarity=0.286 Sum_probs=104.4
Q ss_pred hhhHHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHH
Q psy11677 10 EQHFLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSE 78 (462)
Q Consensus 10 ~~~~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~ 78 (462)
++..++.++.+++.+. .+++.++++|++|+.+|..++|| |+++|||||||++ ++++|+++++.
T Consensus 126 ~~~~~~~i~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~-----d~~~i~~i~~~ 199 (258)
T 1gs5_A 126 QPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGAD-LILLSDVSGILDG-----KGQRIAEMTAA 199 (258)
T ss_dssp EECCCHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCT-----TSCBCCEECHH
T ss_pred eEECHHHHHHHHHCCCEEEEeCCcCCCCCcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECC-----CCCCCcccCHH
Confidence 4455667888888772 34667899999999999999999 9999999999997 47999999999
Q ss_pred hHHhhhhcCCCCCCCCcchHHHHHHHHHHHc-CCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 79 MRDTVQFGQKSKVGTGGMDSKVNSATWALDR-GVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 79 e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~-Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
|+.++.. +..++|||.+|+.+|..+++. |++++|+||+.|+.|.++|+|++.||+|.
T Consensus 200 e~~~l~~---~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 200 KAEQLIE---QGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHHHHHH---TTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred HHHHHHh---cCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 9988762 357899999999999998764 78999999999999999999999999986
|
| >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-17 Score=171.36 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=103.4
Q ss_pred HHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++.+++.+. ++++.++|+|++|+.+|..++||+|+|+|||||||++ ++++|++++..|+.+
T Consensus 175 ~~~i~~lL~~g~ipIi~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~-----~~~~i~~i~~~e~~~ 249 (456)
T 3d2m_A 175 TAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP-----DGTLAETLSAQEAQS 249 (456)
T ss_dssp HHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT-----TSCBCSEEEHHHHHH
T ss_pred HHHHHHHHHCCCeEEECCcccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC-----CCCccccCCHHHHHH
Confidence 466778888772 3467789999999999999999999999999999986 589999999999988
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhHH-HHHHcCCccccccccCC
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~L-~~~l~g~~~GT~I~~~~ 141 (462)
++.. ++|||.+|+++|..+++.|+ +++|+||..|+.+ .++|+|++.||+|.++.
T Consensus 250 ~~~~-----g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~ 305 (456)
T 3d2m_A 250 LAEH-----AASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEA 305 (456)
T ss_dssp HHTT-----CCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCC
T ss_pred HHhc-----cCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeeccc
Confidence 7632 34999999999999999999 6999999999996 88889999999998754
|
| >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-17 Score=159.55 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=99.0
Q ss_pred HHHhHHHHHHHHh----c--CCccccChHHHHHHHHHHcCCCeEEEEe-cCcccccCCCC-CCCCcccccccHHhHHhhh
Q psy11677 13 FLTNFNELFRSIF----Q--KLISIKDNDSLAAMLAAEIQADLLILMS-DVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQ 84 (462)
Q Consensus 13 ~~~~~~e~~~~~~----~--~ei~~gdnD~lAa~lA~~l~Ad~LIiLT-DVdGVY~~dP~-~p~AklI~~I~~~e~~~l~ 84 (462)
...++.++++.+. . .+.++.++|++|+.+|..++||+|+++| ||||||++||+ +|++++|+++++.|+.++
T Consensus 122 ~~~~~~~lL~~g~IpVi~gg~g~~~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~- 200 (255)
T 2jjx_A 122 IRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ- 200 (255)
T ss_dssp CHHHHHHHHHTTCEEEEESTTSCSSCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT-
T ss_pred cHHHHHHHHhCCcEEEEeCCCCCCccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc-
Confidence 3344446666652 1 2456788999999999999999999999 99999999998 899999999999877664
Q ss_pred hcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 85 FGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 85 ~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
|+|+|.+ .++..+.+.|++++|+||+.|+.|.++|+|++.||+|.++
T Consensus 201 -------G~~~m~~--~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 201 -------NIQVMDQ--AALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp -------TCCSSCH--HHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred -------CCccCHH--HHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 4688975 4666677789999999999999999999999999999874
|
| >4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-17 Score=164.31 Aligned_cols=103 Identities=18% Similarity=0.273 Sum_probs=88.9
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
.|+|||++|+++|..++||+|||||||||||+++| +|++++|++++..|+.++.. .+.+++|||.+|++||..++++
T Consensus 228 ~vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~-~~~~~~i~~it~~e~~~~~~--~g~~~~GgM~pKv~Aa~~~v~~ 304 (332)
T 4axs_A 228 GVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFN-KPTQKALKTVDVKALNNFIN--QDQFAKGSMLPKIKAAMGFVNG 304 (332)
T ss_dssp SCCCHHHHHHHHHHHTTCSEEEEECSCSSCEESTT-STTCEECSSCBHHHHHHHHH--TTCSCTTTTHHHHHHHHHHHTT
T ss_pred eeechHHHHHHHHHHhCCceEEEEecCCceEcCCC-CcchhhcccCCHHHHHHHHH--CCCcCcCCcHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999776 47889999999999988763 3468899999999999999998
Q ss_pred CC--eEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 110 GV--SVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 110 Gv--~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
|. .++|.+ ++.+.+++.|+ .||+|..
T Consensus 305 g~g~~~iI~~---~~~~~~~l~g~-~GT~IvA 332 (332)
T 4axs_A 305 HPNRSAIIAD---LSKVEDALKGL-SGTKIIA 332 (332)
T ss_dssp CTTCEEEEEC---STTHHHHTTTS-SSEEEBC
T ss_pred CCCcEEEECC---HHHHHHHHCCC-CCcEEeC
Confidence 76 566654 45588999997 7999963
|
| >3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-16 Score=155.34 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=98.4
Q ss_pred HHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHh-H
Q psy11677 13 FLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEM-R 80 (462)
Q Consensus 13 ~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e-~ 80 (462)
-.+.++.+++.+. ..++.++|+|++|+.+|..++||+|+|+|||||||++ |++++|++++..| .
T Consensus 169 ~~~~i~~lL~~g~IpVi~~~g~~~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~----~~~~~i~~i~~~e~~ 244 (307)
T 3zzh_A 169 TKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEY 244 (307)
T ss_dssp CCHHHHHHHHHTCEEEECCCEECTTCBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET----TTTEECCEEEHHHHH
T ss_pred CHHHHHHHHHCCCEEEEeCCeECCCCcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecC----CCCcCCcccCHHHHH
Confidence 3466778888762 2456789999999999999999999999999999986 4789999999976 5
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHc---CCeEEEEeCCChhH-HHHHHcCCccccccccCCC
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDR---GVSVVICNGMQKEA-IKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~---Gv~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~~~ 142 (462)
..+.. +..++|||.+|++++..|.+. |.+++|++ ++. +.++|+++++||+|.+.++
T Consensus 245 ~~l~~---~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g~GT~I~~~~~ 304 (307)
T 3zzh_A 245 DDLMK---QSWVKYGTKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRGYK 304 (307)
T ss_dssp HHHHT---STTSCHHHHHHHHHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCCCSEEEECCC-
T ss_pred HHHHh---CCCCCCcHHHHHHHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCCCcEEEecCCc
Confidence 66652 357799999999976666654 88999998 666 5889999999999998664
|
| >3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.3e-17 Score=169.69 Aligned_cols=185 Identities=15% Similarity=0.161 Sum_probs=141.5
Q ss_pred HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccccccccC-C-----CCCCCCceeeEEEEeCC
Q psy11677 166 SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTDAS-A-----QSGGTPVEVLAEIWKNE 223 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~~~-d-----~~~~~PlGVi~~IyEsr 223 (462)
+++.|.++.++|..++..|.-. +...+++.+ .+...+ + ..++.|+||+++|++.-
T Consensus 43 ~a~~l~~~~~ela~~~~~e~Gk~~~e~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~P~GVv~~I~P~N 119 (464)
T 3k9d_A 43 IADAGYGAREKLAKMAHEETGFGIWQDKVIKNVFASKHVYNYIKDMK---TIGMLKEDNEKKVMEVAVPLGVVAGLIPST 119 (464)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTCC---CSEEEEEETTTTEEEEEEECCEEEEEECSS
T ss_pred HHHHHHHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhhccc---ccceeccCCCceeEEEEecceEEEEECCCc
Confidence 8888888888888877766432 222333333 111111 1 13589999999998763
Q ss_pred CCcccccc------------------cccccchHHHHH----hhcCCC----CeEEeec--CHHHHHHHhcCCCCccEEe
Q psy11677 224 TLNTTVPK------------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TREEISDLLSMEKHIDLII 275 (462)
Q Consensus 224 ~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~~~~~ll~~~~~iDliI 275 (462)
.|..+.- +++..|+ ..++ +++.++ +++++|+ +++....|++..+ ||+|+
T Consensus 120 -~P~~~~~~~~~~ALaaGN~VVlKps~~ap~t~-~~l~~ll~~~~~~aG~P~gvv~vv~g~~~~~~~~L~~~~~-vd~I~ 196 (464)
T 3k9d_A 120 -NPTSTVIYKTLISIKAGNSIVFSPHPNALKAI-LETVRIISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKD-TAVIL 196 (464)
T ss_dssp -SHHHHHHHHHHHHHHTTCEEEEEECGGGHHHH-HHHHHHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTT-EEEEE
T ss_pred -ChHHHHHHHHHHHHHhCCeEEEECCcchHHHH-HHHHHHHHHHHHHhCCCCCeEEEEeCCCHHHHHHHHhCCC-CCEEE
Confidence 3864321 7788888 6654 566666 8999998 4788899998764 99999
Q ss_pred ecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc--cccCh
Q psy11677 276 PRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM--DVSGL 353 (462)
Q Consensus 276 PrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 353 (462)
++||..+++.+.++ .+||+++|.|+|++|||+|||+++|++.++.+|++++|. .|.+.+.++ +.++.
T Consensus 197 fTGs~~v~~~a~~~--~kpvlelG~G~~p~iV~~dADl~~Aa~~i~~~~~~n~Gq---------~C~a~~rvlV~~~i~d 265 (464)
T 3k9d_A 197 ATGGSAMVKAAYSS--GTPAIGVGPGNGPAFIERSANIPRAVKHILDSKTFDNGT---------ICASEQSVVVERVNKE 265 (464)
T ss_dssp ECSCHHHHHHHTTS--SSCEEEBCCCCCEEEECTTSCHHHHHHHHHHHHTGGGGC---------STTSCCEEEEEHHHHH
T ss_pred EeCChHHHHHHHhc--CCcEEeeCCCCCeEEECCCCCHHHHHHHHHHHHhcCCCC---------CCCCCcEEEEeHHHHH
Confidence 99999999988764 699999999999999999999999999999999999999 777777777 66677
Q ss_pred hhHHHHHHhHHHHH
Q psy11677 354 PCLLLFIRLGSLFI 367 (462)
Q Consensus 354 ~~~~~~~~~~~~~~ 367 (462)
+.+.+|.+.+.+|+
T Consensus 266 ~f~~~l~~~~~~~~ 279 (464)
T 3k9d_A 266 AVIAEFRKQGAHFL 279 (464)
T ss_dssp HHHHHHHHTTEEEC
T ss_pred HHHHHHHHhhhhhc
Confidence 77888887776554
|
| >3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=161.25 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=102.4
Q ss_pred HHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHH-hH
Q psy11677 13 FLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSE-MR 80 (462)
Q Consensus 13 ~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~-e~ 80 (462)
-.+.++.+++.+. ..++.++|+|++|+.+|..++||+|+++|||||||++ ++++|++++.. +.
T Consensus 179 ~~~~i~~lL~~g~IpVi~p~g~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~-----~~~lI~~i~~~~e~ 253 (460)
T 3s6g_A 179 HLDLVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDE-----DGDILSSINLATDF 253 (460)
T ss_dssp CCHHHHHHHHTTCEEEEECEEECTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCT-----TSSBCCEEEHHHHH
T ss_pred cHHHHHHHHHCCcEEEEECceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCC-----CCeecceeCcHHHH
Confidence 3456777777762 3456779999999999999999999999999999985 58999999986 67
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHH-HHHHcCCccccccccCCC
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAI-KQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L-~~~l~g~~~GT~I~~~~~ 142 (462)
..+.. +..++|||.+|+++|..+.+.+.+++|++|+.|+.| .++|+++++||+|.+.+.
T Consensus 254 ~~l~~---~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~e~ 313 (460)
T 3s6g_A 254 GDLMQ---ADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRGER 313 (460)
T ss_dssp HHHHH---CSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECCCC
T ss_pred HHHHh---cCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcCCc
Confidence 77753 357899999999999998874447999999999985 589999999999998743
|
| >3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=149.31 Aligned_cols=105 Identities=28% Similarity=0.329 Sum_probs=87.6
Q ss_pred HHhHHHHHHHHh----------cCCccc-cChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSIF----------QKLISI-KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~~----------~~ei~~-gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
++.++++++.+. ..+..| .|+|++|+.+|..++||+|+|+|||||||+ ++++|++++..|+.+
T Consensus 162 ~~~i~~lL~~g~IPVi~~v~~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~------d~~~I~~i~~~e~~~ 235 (279)
T 3l86_A 162 KRVIEEFLENRQIPILASLGYSKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLE------NGAVLEKITSHQVQE 235 (279)
T ss_dssp HHHHHHHHHTTCEEEEESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEE------TTEECCEEEGGGSHH
T ss_pred HHHHHHHHhCCcEEEECCcEECCCCCEeecCHHHHHHHHHHHcCCCEEEEEeCCCcccc------CCEehhhccHHHHHH
Confidence 566777777762 112233 499999999999999999999999999995 489999999999888
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
++. +.+++|||.+|+++|..|++.|+ +++|+|+..+ ||+|..
T Consensus 236 l~~---~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~------------GT~i~~ 278 (279)
T 3l86_A 236 KID---TAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLT------------GTLITA 278 (279)
T ss_dssp HHH---TTSSCTTHHHHHHHHHHHHHTTCSEEEEESSSSC------------SEEEEC
T ss_pred HHh---CCCCcCcHHHHHHHHHHHHHcCCCEEEEeccCCC------------CeEEec
Confidence 863 35789999999999999999999 5999998643 899864
|
| >3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-15 Score=158.49 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=101.8
Q ss_pred HHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHH-hH
Q psy11677 13 FLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSE-MR 80 (462)
Q Consensus 13 ~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~-e~ 80 (462)
-.+.++.+++.+. ..++.++|+|++|+.+|..++||+|+++|||||||++ ++++|++++.. +.
T Consensus 182 ~~~~i~~lL~~g~IpVi~pvg~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~-----~~~lI~~i~~~~e~ 256 (467)
T 3s6k_A 182 NLAPIEASLQAGSIPVITSLGETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDA-----EGKLIDSINLSTEY 256 (467)
T ss_dssp CCHHHHTHHHHTCBCCCCSCCCCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCS-----SCCCCCCCCTTTTT
T ss_pred cHHHHHHHHHCCCEEEEECceECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCC-----CCCCccccChHHHH
Confidence 3456777777762 2356789999999999999999999999999999985 58999999986 66
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHH-HHHHcCCccccccccCCC
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAI-KQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L-~~~l~g~~~GT~I~~~~~ 142 (462)
..+.. +..++|||.+|+++|..+.+.+.++++++|..|+.| .++|+++++||+|.+.+.
T Consensus 257 ~~l~~---~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~e~ 316 (467)
T 3s6k_A 257 DHLMQ---QPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRGER 316 (467)
T ss_dssp HHHHT---SSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCCCC
T ss_pred HHHHh---cCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCCCc
Confidence 66653 357899999999999988875448999999999985 578999999999998743
|
| >4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=152.59 Aligned_cols=198 Identities=13% Similarity=0.072 Sum_probs=129.9
Q ss_pred HHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHh-H
Q psy11677 13 FLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEM-R 80 (462)
Q Consensus 13 ~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e-~ 80 (462)
-.+.++.+++.+. ..++.++|+|++|+.+|..|+||+|+++|||||||++ |++++|++++..+ .
T Consensus 169 ~~~~I~~lL~~G~IPVi~~~g~~~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~----~~~~lI~~it~~e~~ 244 (464)
T 4ab7_A 169 TKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEY 244 (464)
T ss_dssp CCHHHHHHHHTTCEEEEESEEECTTCBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECT----TTCCEECEEEHHHHH
T ss_pred CHHHHHHHHHCCcEEEEcCCcCCCCCCEEEecHHHHHHHHHHHcCCCEEEEEecccccccC----CCCcCCcccCHHHHH
Confidence 4566778888762 3456789999999999999999999999999999986 4789999999976 5
Q ss_pred HhhhhcCCCCCCCCcchHHHHHHHHHHHc---CCeEEEEeCCChhHHHHHHcCCccccccccCCCCCCCCcHHHHHHHHH
Q psy11677 81 DTVQFGQKSKVGTGGMDSKVNSATWALDR---GVSVVICNGMQKEAIKQIVAGRKIGTFFTDASAQSGGTPVEVLAENVN 157 (462)
Q Consensus 81 ~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~---Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~~~~~~~~~~ia~~AK 157 (462)
..+.. +..++|||.+|++++..|.+. |.+++|++ ....+.++|+++++||+|.+..+.-..-++..++-..|
T Consensus 245 ~~li~---~~~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~--~~~ll~eLft~~g~GT~I~~~~~~~r~a~~~dv~~~~~ 319 (464)
T 4ab7_A 245 DDLMK---QSWVKYGTKLKIREIKELLDYLPRSSSVAIIN--VQDLQKELFTDSGAGTMIRRGYKLVKRSSIGEFPSADA 319 (464)
T ss_dssp HHHHT---CSSCCHHHHHHHHHHHHHHTTSCTTCEEEEEE--STTHHHHTTSSSTTSEEEECCCCCEEESSGGGSSCHHH
T ss_pred HHHHh---cCCCCCcHHHHHHHHHHHHHhcccCcEEEEec--ChHHHHHHhcCCCCceEEecCccccccCChhhhcCHHH
Confidence 56652 467899999999977766654 78999998 23347788999999999998732100011223211111
Q ss_pred HHHHHHHHHHHHHHhCCchhhcCchhcHHH-HHHHHhhccccccccccCCCCCCCCceeeEEEEeCCCCccc---ccccc
Q psy11677 158 LKMEILVNSATWALDRGVSVVICNGMQKEA-IKQIVAGRKIGTFFTDASAQSGGTPVEVLAEIWKNETLNTT---VPKKH 233 (462)
Q Consensus 158 ~As~~L~~iA~aL~~~~~~IL~AN~~D~~~-~~~~~~~~~i~t~~a~~~d~~~~~PlGVi~~IyEsr~~Pnv---~~~~e 233 (462)
+-+.|....+ + .-+..+++. ++.+-...- .+. +.=|..+++++++.+..|.. ++.++
T Consensus 320 --------L~~lL~~s~~-~-~~~~~~v~~y~~~L~~~~~---~iy------~d~~y~~~AIv~~~~~~~~LdkFav~~~ 380 (464)
T 4ab7_A 320 --------LRKALQRDAG-I-SSGKESVASYLRYLENSDF---VSY------ADEPLEAVAIVKKDTNVPTLDKFVCSDA 380 (464)
T ss_dssp --------HHHHHTTSTT-T-SSSSSCHHHHHHHHHTSCE---EEE------ECTTCSEEEEEECSSSSCEEEEEEECHH
T ss_pred --------HHHHHHhccc-c-cchhhhHHHHHHHhhcCce---EEE------EeCCceEEEEEecCCCCEEEEEEEEccc
Confidence 3344543321 1 122334443 444433222 111 23367888999876633332 23377
Q ss_pred cccch
Q psy11677 234 AKTSQ 238 (462)
Q Consensus 234 a~~sn 238 (462)
+..+|
T Consensus 381 ~~~~g 385 (464)
T 4ab7_A 381 AWLNN 385 (464)
T ss_dssp HHHTT
T ss_pred ccccC
Confidence 77777
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=149.75 Aligned_cols=94 Identities=23% Similarity=0.262 Sum_probs=82.4
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
.+|++|++|+.+|..|+||+|++||||||||++||+ +|++++|+++++.|+.+++.. |.+..|++++..|.+
T Consensus 150 grg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~-------Ga~v~~~~a~~~a~~ 222 (421)
T 3ab4_A 150 GRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAV-------GSKILVLRSVEYARA 222 (421)
T ss_dssp --CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHT-------TCCSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhc-------CCcCchHHHHHHHHH
Confidence 346999999999999999999999999999999998 899999999999999888631 334556779999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDA 140 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~ 140 (462)
.|++++|.|+..| +.||+|.++
T Consensus 223 ~gi~v~I~n~~~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 223 FNVPLRVRSSYSN----------DPGTLIAGS 244 (421)
T ss_dssp TTCCEEEEESSSC----------CCCEEECSC
T ss_pred cCCCEEEecCcCC----------CCCeEEEec
Confidence 9999999999887 579999875
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=156.10 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=86.2
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHH
Q psy11677 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWAL 107 (462)
Q Consensus 29 i~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~ 107 (462)
+.+|+||++|+.+|..++||+|++||||||||++||+ +|++++|+++++.|+.+++ ..|+|||.+ +++..|.
T Consensus 150 lgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela-----~~G~~vm~p--~a~~~a~ 222 (600)
T 3l76_A 150 LGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELA-----SLGAKVLHP--RAVEIAR 222 (600)
T ss_dssp CCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTG-----GGGTTTCCH--HHHHHHH
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHH-----hCCCCccHH--HHHHHHH
Confidence 4456799999999999999999999999999999998 8999999999999998875 357899999 7999999
Q ss_pred HcCCeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 108 DRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 108 ~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
++|++++|.|+..+ ..||+|.+..
T Consensus 223 ~~gipv~I~n~~~~----------~~GT~I~~~~ 246 (600)
T 3l76_A 223 NYGIPLVVRSSWSD----------EPGTKVVAPP 246 (600)
T ss_dssp HHTCCEEEEETTCC----------SCCEEEECCC
T ss_pred HCCCeEEEEECCCC----------CCCeEEecCC
Confidence 99999999999764 4699998654
|
| >1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-14 Score=153.32 Aligned_cols=199 Identities=26% Similarity=0.382 Sum_probs=145.3
Q ss_pred CCc-HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------------------HHHH
Q psy11677 146 GTP-VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------------------IKQI 191 (462)
Q Consensus 146 ~~~-~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------------~~~~ 191 (462)
+|+ +......||.|.+.+.. +++.|.++.++|.+++..|.-+ ++.+
T Consensus 12 ~~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~ 91 (468)
T 1vlu_A 12 HMSSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVM 91 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHH
Confidence 344 66666777777654222 8999999999999887766533 3334
Q ss_pred Hhhcccccccccc--------C-----C----CCCCCCceeeEEEEeCCCCcccccc-----------------cccccc
Q psy11677 192 VAGRKIGTFFTDA--------S-----A----QSGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTS 237 (462)
Q Consensus 192 ~~~~~i~t~~a~~--------~-----d----~~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~s 237 (462)
++.++ .+... + + ..++.|+||+++|++.. |+.+.. +++-.|
T Consensus 92 a~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pwN--P~~~~~~~~~ALaaGN~VVlKps~~tp~t 166 (468)
T 1vlu_A 92 LQGIK---DVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESR--PEVIANITALSIKSGNAAILKGGKESVNT 166 (468)
T ss_dssp HHHHH---HHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESSC--THHHHHHHHHHHHHTCEEEEECCGGGHHH
T ss_pred HHHHH---HHhhcCCCCCeecccccCCCCceeEEEecCcceEEEEeccC--hHHHHHHHHHHHHcCCEEEEEcCCccHHH
Confidence 44443 33311 1 0 13478999999999887 853222 677788
Q ss_pred hHHHHHhhc----CC----C----CeEEeecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEE
Q psy11677 238 QCKYFTKML----PR----Y----PLHSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHV 305 (462)
Q Consensus 238 n~~~l~~al----~~----~----~~v~~v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~ 305 (462)
+ ..|++.+ .+ + +++++|++++.+.+.|..+.+||.|.++||....+.|.+.+ .+||+....|+|++
T Consensus 167 ~-~~l~~l~~~aL~e~~~~aGlP~gvv~vv~~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~a-~kpv~lElGGk~p~ 244 (468)
T 1vlu_A 167 F-REMAKIVNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTT-KIPVLGHADGICSI 244 (468)
T ss_dssp H-HHHHHHHHHHHHHHHHHHCCCTTSEEECCCC--CGGGGGCTTTCCEEEEESCHHHHHHHHHTC-CSCBTTBCSCCEEE
T ss_pred H-HHHHHHHHHHHHhhchhcCCCCCcEEEECCHHHHHHHHhhCCCcCEEEEECCHHHHHHHHHhc-CCCEEeecCCccce
Confidence 8 7777444 46 4 99999996667888888889999999999999999999999 59999999999999
Q ss_pred EEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccccChhhHH
Q psy11677 306 YVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDVSGLPCLL 357 (462)
Q Consensus 306 yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (462)
||++|||+++|++.++++|++++|+ |.+...+..+..| -.+.+.+.
T Consensus 245 iV~~dADl~~Aa~~i~~~~~~n~G~-----C~a~~rvlV~~~i-d~f~~~l~ 290 (468)
T 1vlu_A 245 YLDEDADLIKAKRISLDAKTNYPAG-----CNAMETLLINPKF-SKWWEVLE 290 (468)
T ss_dssp EECTTCCHHHHHHHHHHTTCC---------CCCCEEEEECTTS-TTHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHhcCCCCc-----CCcCcEEEEECCH-HHHHHHHH
Confidence 9999999999999999999998776 6666666666666 44444443
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-14 Score=148.75 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=83.0
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
.+|+||+.|+.+|..++||.+++||||||||++||+ +|++++|+++++.|+.+++ ..|.++|.+ +++..|.+
T Consensus 184 ~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela-----~~Ga~vl~~--~a~~~a~~ 256 (446)
T 3tvi_A 184 SRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELS-----YMGATVLHE--EAIFPVKD 256 (446)
T ss_dssp SSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTT-----TC----CCS--TTTHHHHH
T ss_pred ccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHH-----hCCCCcchH--HHHHHHHH
Confidence 346899999999999999999999999999999998 8999999999999998885 246677855 68999999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
+|++++|.|+..|+ ..||+|.+...
T Consensus 257 ~~ipi~i~~~~~p~---------~~GT~i~~~~~ 281 (446)
T 3tvi_A 257 SGIPINIKNTNKPS---------DPGTLILSDTH 281 (446)
T ss_dssp SSCCEEEEETTBTT---------SCCEEEECTTT
T ss_pred cCCeEEEecCCCCC---------CCCEEEecCCc
Confidence 99999999999884 57999987643
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-14 Score=149.20 Aligned_cols=93 Identities=25% Similarity=0.280 Sum_probs=81.4
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHH---HHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKV---NSATW 105 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl---~AA~~ 105 (462)
.+|+||++|+.+|..++||.|+++|||||||++||+ +|++++|+++++.|+.+++. .| +|+ .++..
T Consensus 197 ~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~ela~-----~G-----~kvlh~~a~~~ 266 (449)
T 2j0w_A 197 GRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMAT-----FG-----AKVLHPATLLP 266 (449)
T ss_dssp CTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHH-----TT-----CTTSCTTTHHH
T ss_pred CCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHHHHh-----cC-----CccchHHHHHH
Confidence 346699999999999999999999999999999998 89999999999999988852 12 456 68888
Q ss_pred HHHcCCeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 106 ALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 106 a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
|.+.|++++|.||..|+ ..||+|.+..
T Consensus 267 a~~~gi~v~I~~~~~p~---------~~GT~I~~~~ 293 (449)
T 2j0w_A 267 AVRSDIPVFVGSSKDPR---------AGGTLVCNKT 293 (449)
T ss_dssp HHHHTCCEEEEESSCTT---------SCCEEEESCC
T ss_pred HHHCCCeEEEEECCCCC---------CCeeEEeccc
Confidence 99999999999999885 5799998753
|
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-14 Score=150.75 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=85.6
Q ss_pred cccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHH
Q psy11677 30 SIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALD 108 (462)
Q Consensus 30 ~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~ 108 (462)
.+|++|+.|+.+|..++||.|++||||||||++||+ +|++++|+++++.|+.+++. .|.++|.+| ++..|.+
T Consensus 229 grGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~-----~Ga~vmh~~--a~~~a~~ 301 (510)
T 2cdq_A 229 GRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAY-----FGAQVLHPQ--SMRPARE 301 (510)
T ss_dssp CTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHH-----HHSSCCCHH--HHHHHHH
T ss_pred CCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHh-----cCcchhHHH--HHHHHHH
Confidence 356699999999999999999999999999999998 89999999999999988752 567889886 8888999
Q ss_pred cCCeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 109 RGVSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 109 ~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
+|++++|.|+..|+ ..||+|.+..
T Consensus 302 ~gIpv~I~n~~~p~---------~~GT~I~~~~ 325 (510)
T 2cdq_A 302 GEIPVRVKNSYNPK---------APGTIITKTR 325 (510)
T ss_dssp HTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred CCCeEEEEccCcCC---------CCCeEEeccc
Confidence 99999999999884 5799998753
|
| >3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-14 Score=147.94 Aligned_cols=188 Identities=9% Similarity=0.018 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhccccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRKIGTFF 201 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~i~t~~ 201 (462)
+......||.|.+.+.. +++.|.++.++|.+++..|.-+ ++.++..++ .+
T Consensus 28 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~---~~ 104 (484)
T 3ros_A 28 IDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLSESKEEVELCVSICNYYADHGP---EM 104 (484)
T ss_dssp HHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH---Hh
Confidence 55566667776653222 8999999999999888776532 334443333 22
Q ss_pred cccC----C----CCCCCCceeeEEE--EeCCCCcccccc-----------------cccccchHHHHHhhcCCC----C
Q psy11677 202 TDAS----A----QSGGTPVEVLAEI--WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 202 a~~~----d----~~~~~PlGVi~~I--yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~----~ 250 (462)
.... + ...+.|+||+++| |... ++.+.. +++-.|+ ..|++.+.++ +
T Consensus 105 ~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P--~~~~~~~~a~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~aGlP~g 181 (484)
T 3ros_A 105 LKPTKLNSDLGNAYYLKQSTGVIMACEPWNFP--LYQVIRVFAPNFIVGNPILLKHAHNVPGSA-ALTAKIIKRAGAPEG 181 (484)
T ss_dssp TSCEEECCTTSEEEEEEECCCEEEEECCSSST--THHHHHHHHHHHHHTCCEEEECCTTCHHHH-HHHHHHHHHHTCCTT
T ss_pred cCCeeccCCCceeEEEecCCceEEEECCCchH--HHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHhCcCcC
Confidence 2111 0 1358999999999 5554 443221 6777888 8888776665 8
Q ss_pred eEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 251 LHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 251 ~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
++++|+ +.+.+.+|+ .+..||.|.++||...-+.|.+.+. .+||+....|+|++||++|||+++|++.++++|+.+
T Consensus 182 vv~vv~g~~~~~~~L~-~~p~vd~I~fTGS~~~G~~i~~~aa~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n 260 (484)
T 3ros_A 182 SLINLYPSYDQLADII-ADPRIQGVALTGSERGGSAVAEAAGKNLKKSTMELGGNDAFIVLDDADPQVLRNVLNDARTYN 260 (484)
T ss_dssp SEEEECCCHHHHHHHH-TSTTEEEEEEESCHHHHHHHHHHHHHTTCEEEEECCCCCEEEECTTCCHHHHHHHHTTTTTGG
T ss_pred eEEEEeCChHHHHHHH-hCCCcCEEEEECCHHHHHHHHHHHhccCCceEeecCCCCcceeCCCCCHHHHHHHHHHHHhcC
Confidence 999999 577777844 5667999999999998888876652 389999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHhhhccc
Q psy11677 328 QGLNPEDRAKAIYNLADQGE 347 (462)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~ 347 (462)
.|- .|.+...+..++.
T Consensus 261 ~GQ----~C~a~~rvlV~~~ 276 (484)
T 3ros_A 261 DGQ----VCTSSKRIIVEKS 276 (484)
T ss_dssp GGC----CTTSCCEEEEEGG
T ss_pred CCC----CccCCceEEEcHH
Confidence 885 2444444444443
|
| >1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-13 Score=140.56 Aligned_cols=191 Identities=19% Similarity=0.311 Sum_probs=140.9
Q ss_pred CCc-HHHHHHHHHHHHHHHH------------HHHHHHHhCCchhhcCchhcHHH--------------------HHHHH
Q psy11677 146 GTP-VEVLAENVNLKMEILV------------NSATWALDRGVSVVICNGMQKEA--------------------IKQIV 192 (462)
Q Consensus 146 ~~~-~~~ia~~AK~As~~L~------------~iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~ 192 (462)
+|. +......||.|..... .+++.|.++.++|.+++..|+.+ +..++
T Consensus 12 ~~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~~~ 91 (427)
T 1o20_A 12 HMDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMI 91 (427)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHHHH
Confidence 344 5556666776655322 19999999999999887776531 34445
Q ss_pred hhccccccccccCC-------------C----CCCCCceeeEEEEeCCCCcccccc-----------------cccccch
Q psy11677 193 AGRKIGTFFTDASA-------------Q----SGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQ 238 (462)
Q Consensus 193 ~~~~i~t~~a~~~d-------------~----~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn 238 (462)
+.++ ..+..++ . .++.|+||+++|+... |+.+.. +.+-.|+
T Consensus 92 ~~l~---~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~p--~~~~~~~~~~ALaaGNtVVlKps~~tp~t~ 166 (427)
T 1o20_A 92 KACE---TVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESR--PNVTVETTILALKSGNTILLRGGSDALNSN 166 (427)
T ss_dssp HHHH---HHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSC--THHHHHHHHHHHHTTCCEEEECCGGGHHHH
T ss_pred HHHH---HHHhcccccCccccccccCCCceeEEEeecceeEEEEecCC--hHHHHHHHHHHHHcCCEEEEECCHhHHHHH
Confidence 5554 3332211 1 2478999999999754 653222 6667777
Q ss_pred HHHHH----hhcCCC----CeEEeecC--HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEc
Q psy11677 239 CKYFT----KMLPRY----PLHSQVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVD 308 (462)
Q Consensus 239 ~~~l~----~al~~~----~~v~~v~~--r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd 308 (462)
..|+ ++|.++ +++++|+. ++.+.++|..+..||.|..+||....+.|.+.+ .+||+....|+|++||+
T Consensus 167 -~~l~~l~~~al~eaGlP~gvv~vv~g~~~~~~~~~L~~~~~v~~I~fTGS~~~G~~i~~~a-~~~v~lELGGk~p~iV~ 244 (427)
T 1o20_A 167 -KAIVSAIREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNA-TVPVLETGVGNCHIFVD 244 (427)
T ss_dssp -HHHHHHHHHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHC-SSCBCCCCCCCEEEEEC
T ss_pred -HHHHHHHHHHHHHcCCCcccEEEecCCChHHHHHHHhCCCCccEEEeCCChHHHHHHHHhc-CCCEEEecCCCceEEEe
Confidence 7777 455465 89999983 688999999988999999999999999999999 49999999999999999
Q ss_pred cCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 309 KDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 309 ~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+|||+++|++.++.+|..+.++ |.+...+..++.|
T Consensus 245 ~dADl~~Aa~~i~~~~f~n~G~-----C~a~~rv~V~~~i 279 (427)
T 1o20_A 245 ESADLKKAVPVIINAKTQRPGT-----CNAAEKLLVHEKI 279 (427)
T ss_dssp TTSCHHHHHHHHHHHHHSCTTS-----TTSEEEEEEEHHH
T ss_pred CCCCHHHHHHHHHHHhccCCCC-----CCCccEEEEehhh
Confidence 9999999999999999998766 4444444444443
|
| >2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=5e-13 Score=141.02 Aligned_cols=190 Identities=31% Similarity=0.488 Sum_probs=137.6
Q ss_pred cHHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHH-------------------HHHHHHhhcc
Q psy11677 148 PVEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKE-------------------AIKQIVAGRK 196 (462)
Q Consensus 148 ~~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~-------------------~~~~~~~~~~ 196 (462)
.+......||.|.+.+.. +++.|.++.++|..++..|.. .+..+++.++
T Consensus 30 ~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~~~~Gk~~~~rl~~a~~ev~~~~~~~~ 109 (463)
T 2h5g_A 30 TVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAAPLLKRLSLSTSKLNSLAIGLR 109 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTSCHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccccCCCchhhhhhhhHHHHHHHHHHHH
Confidence 366666677776654333 999999999999999877772 1333444444
Q ss_pred cccccccc---------C-----C----CCCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHH
Q psy11677 197 IGTFFTDA---------S-----A----QSGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKY 241 (462)
Q Consensus 197 i~t~~a~~---------~-----d----~~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~ 241 (462)
..+.. + . ..++.|+||+++|++++ |..++. +.+-.|+ ..
T Consensus 110 ---~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~n--P~n~p~~~a~ALaaGN~VVlKps~~tp~t~-~~ 183 (463)
T 2h5g_A 110 ---QIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESR--PDCLPQVAALAIASGNGLLLKGGKEAAHSN-RI 183 (463)
T ss_dssp ---HHHHHCTTSTTCEEEEEEEETTEEEEEEEEECCEEEEEESSC--TTHHHHHHHHHHHHTCEEEEECCGGGHHHH-HH
T ss_pred ---HHHHhhHhhcCcccccccCCCCceeEEEEEcCceEEEEecCC--cHHHHHHHHHHHHcCCEEEEECCCCcHHHH-HH
Confidence 22211 0 0 12478999999999997 864322 6777787 77
Q ss_pred HH----hhcCC---CCeEEeecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHH
Q psy11677 242 FT----KMLPR---YPLHSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIR 314 (462)
Q Consensus 242 l~----~al~~---~~~v~~v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~ 314 (462)
|+ ++|.+ .+++++|+....+.+.|-.+..||.|.++||....+.|++.+..+||+....|+|++||++|||++
T Consensus 184 l~~l~~~al~~~GP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aal~pv~lElGGk~p~iV~~dADl~ 263 (463)
T 2h5g_A 184 LHLLTQEALSIHGVKEAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVD 263 (463)
T ss_dssp HHHHHHHHHHTTTCGGGEEECCTTCCC-------CCCSEEEEESCHHHHHHHHHHCSSSCBCSCSCCCEEEEECTTCCTT
T ss_pred HHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhcCCCCEEEecCCcceEEEcCCCCHH
Confidence 77 55442 489999996555667676777899999999999999999987339999999999999999999999
Q ss_pred HHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 315 KAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 315 ~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+|++.++++|+.+ | ..|.+...+..|+.|
T Consensus 264 ~Aa~~i~~~~f~n-G----Q~C~a~~rvlV~~~i 292 (463)
T 2h5g_A 264 KVTRLVRDSKCEY-P----AACNALETLLIHRDL 292 (463)
T ss_dssp THHHHHHHHHHSC-T----TSTTSEEEEEEEGGG
T ss_pred HHHHHHHHHhccC-C----CccccCcEEEEeccc
Confidence 9999999999986 3 457776666666666
|
| >3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-13 Score=145.38 Aligned_cols=189 Identities=15% Similarity=0.053 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhccccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRKIGTFF 201 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~i~t~~ 201 (462)
+......||.|.+.+.. +++.|+++.++|..+...|.-+ ++.++..++ .+
T Consensus 52 v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~---~~ 128 (497)
T 3k2w_A 52 AENALEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLLSVAEMEVDVTATFIDYGCDNAL---TI 128 (497)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTTT---TC
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH---Hh
Confidence 55666677776654332 8899999998888877666432 334444433 22
Q ss_pred ccc--C--C-----CCCCCCceeeEEEEe-CCCCccc-----------------c-cccccccchHHHHHhhcCCC----
Q psy11677 202 TDA--S--A-----QSGGTPVEVLAEIWK-NETLNTT-----------------V-PKKHAKTSQCKYFTKMLPRY---- 249 (462)
Q Consensus 202 a~~--~--d-----~~~~~PlGVi~~IyE-sr~~Pnv-----------------~-~~~ea~~sn~~~l~~al~~~---- 249 (462)
..- + . ...+.|+||+++|.. .. |-. + +.+++-.|+ ..|++.+.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~--P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~ll~~aGlP~ 205 (497)
T 3k2w_A 129 EGDILPSDNQDEKIYIHKVPRGVVVGITAWNF--PLALAGRKIGPALITGNTMVLKPTQETPLAT-TELGRIAKEAGLPD 205 (497)
T ss_dssp CEEEEECSSTTEEEEEEEEECSEEEEECCSSS--HHHHHHHHHHHHHHTTCEEEEECCSSSCHHH-HHHHHHHHHTTCCT
T ss_pred cCcccccCCCCcceeEEEcCCceEEEECCCcc--HHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHhCcCc
Confidence 211 1 0 124899999999974 33 521 1 117788888 8888777776
Q ss_pred CeEEeecC--HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 250 PLHSQVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 250 ~~v~~v~~--r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
+++++|+. ++....|++ +..||.|.++||....+.|.+.+. .+||+....|+|++||++|||+++|++.++++|+
T Consensus 206 gvv~vv~g~~~~~g~~L~~-~p~vd~I~fTGS~~~G~~i~~~aa~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~ 284 (497)
T 3k2w_A 206 GVLNVINGTGSVVGQTLCE-SPITKMITMTGSTVAGKQIYKTSAEYMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRF 284 (497)
T ss_dssp TSEEECCSCTTTHHHHHHH-CSSEEEEEEESCHHHHHHHHHHHTTTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCchHHHHHHHh-CCCcCEEEEECcHHHHHHHHHHhhhcCCCeEEEcCCCCceEEcCCCCHHHHHHHHHHHHH
Confidence 89999993 445555654 667999999999999999988762 3899999999999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHhhhcccc
Q psy11677 326 VLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
++.|- .|.+...+..++.|
T Consensus 285 ~n~GQ----~C~a~~rvlV~~~i 303 (497)
T 3k2w_A 285 ANCGQ----VCTCVERLYVHASV 303 (497)
T ss_dssp GGGGC----STTSEEEEEEETTT
T ss_pred hCCCC----CCcCCcEEEEeHHH
Confidence 99884 24444444444443
|
| >4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-13 Score=140.62 Aligned_cols=188 Identities=20% Similarity=0.348 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHH--------------------HHHHHHhhcc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKE--------------------AIKQIVAGRK 196 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~--------------------~~~~~~~~~~ 196 (462)
+......|+.|.+.... +++.|.++.++|.+++..|.. .+..+++.++
T Consensus 28 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~~~~~l~ 107 (444)
T 4ghk_A 28 MTDVGRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVEGLR 107 (444)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHHHHHHHH
Confidence 44445566666554333 899999999999988766541 2455555555
Q ss_pred ccccccccCC-----------------CCCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHH
Q psy11677 197 IGTFFTDASA-----------------QSGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYF 242 (462)
Q Consensus 197 i~t~~a~~~d-----------------~~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l 242 (462)
.++.+.+ ...+.|+||+++|+... |+.+.. +.+-.|+ ..|
T Consensus 108 ---~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~n--P~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l 181 (444)
T 4ghk_A 108 ---QVATLPDPIGEMSNLKYRPSGIQVGQMRVPLGVIGIIYESR--PNVTIDAAALCLKSGNATILRGGSEALESN-TAL 181 (444)
T ss_dssp ---HHHHSCCCTTCEEEEEECTTSCEEEEEEEECSEEEEECCSC--HHHHHHHHHHHHHTTCEEEEECCGGGHHHH-HHH
T ss_pred ---HHHhhccccCccCCcccCCCCccceEEEeccEEEEEEeCCC--cHHHHHHHHHHHHcCCEEEEECCccchHHH-HHH
Confidence 4332211 12488999999999876 863222 5666777 777
Q ss_pred Hhh----cCCC----CeEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCC
Q psy11677 243 TKM----LPRY----PLHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDAD 312 (462)
Q Consensus 243 ~~a----l~~~----~~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad 312 (462)
++. |.++ +++++|+ +++.+.++|..+..||.|..+||....+.|.+.+ .+||+....|+|++||++|||
T Consensus 182 ~~l~~~~l~~aGlP~gvv~vv~g~~~~~~~~~L~~~p~vd~V~fTGs~~vg~~v~~~a-~~pv~lELGGk~p~IV~~dAD 260 (444)
T 4ghk_A 182 AKLIGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEA-RVPMIKHLDGICHVYVDDRAS 260 (444)
T ss_dssp HHHHHHHHHHTTCCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHC-CSCBCCCCCCCCEEEECTTCC
T ss_pred HHHHHHHHHHcCCCcccEEEEeCCCHHHHHHHHhcCCCccEEEEECcHHHHHHHHHhC-CCCEEEEcCCcCeEEECCCCC
Confidence 744 4555 8999998 4778999999899999999999999999999988 499999999999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 313 IRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 313 ~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+++|++.++.+|..+.|+ |.+...+..++.|
T Consensus 261 l~~Aa~~i~~~~~~n~G~-----C~a~~rvlV~~~i 291 (444)
T 4ghk_A 261 VTKALTVCDNAKTHRYGT-----CNTMETLLVARGI 291 (444)
T ss_dssp HHHHHHHCC--------------CCCCCEEEEEGGG
T ss_pred HHHHHHHHHHHhcCCCcc-----cCcCceEEEeHHH
Confidence 999999999999997765 4444444444444
|
| >3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-12 Score=134.31 Aligned_cols=141 Identities=19% Similarity=0.213 Sum_probs=113.0
Q ss_pred CCCCceeeEEEEeCCCCcccccc------------------cccccchHHHHH----hhcCCC----CeEEeec--CHHH
Q psy11677 209 GGTPVEVLAEIWKNETLNTTVPK------------------KHAKTSQCKYFT----KMLPRY----PLHSQVS--TREE 260 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv~~~------------------~ea~~sn~~~l~----~al~~~----~~v~~v~--~r~~ 260 (462)
++.|+||+++|...- +|-.+.- +.+..|+ ..++ +++.++ +++|+|+ +++.
T Consensus 100 ~~~P~GVv~~I~P~N-~P~~~~~~k~~~ALaaGN~VVlKps~~tp~~~-~~~~~~~~~a~~~aG~P~gvv~~v~g~~~~~ 177 (452)
T 3my7_A 100 IAEPVGIICGIVPTT-NPTSTAIFKSLISLKTRNGIIFSPHPRAKNST-NDAAKLVLDAAVAAGAPKDIIGWIDQPSVEL 177 (452)
T ss_dssp EEEECCEEEEEECTT-STTHHHHHHHHHHHHTTCEEEEEECGGGHHHH-HHHHHHHHHHHHHTTCCTTSEEECSSCCHHH
T ss_pred EecCceEEEEEcCCC-ChHHHHHHHHHHHHhcCCeEEEEcCCCchHHH-HHHHHHHHHHHHHcCCCcCcEEEEcCCCHHH
Confidence 589999999996543 3753221 5666777 6655 555555 8999998 5788
Q ss_pred HHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHH
Q psy11677 261 ISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIY 340 (462)
Q Consensus 261 ~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~ 340 (462)
...|++..+ ||+|..+||..+++...++ ..||++.+.|+|++||++|||+++|++.++.||+.+.|- .
T Consensus 178 ~~~L~~~p~-v~~V~fTGs~~~~~~a~~~--~kp~~~e~gG~~p~iV~~dADl~~Aa~~iv~s~~~~~GQ---------~ 245 (452)
T 3my7_A 178 SNALMKHDD-IALILATGGPGMVKAAYSS--GKPAIGVGAGNVPVVIDETADIKRAVASVLMSKTFDNGV---------V 245 (452)
T ss_dssp HHHHHHCTT-CCEEEECSCHHHHHHHHTS--SSCEEECC--CEEEEECTTSCHHHHHHHHHHGGGGGGGC---------C
T ss_pred HHHHHhCCC-ccEEEEECcHHHHHHHHhc--CCCEEecCCCCCeEEEeCCCCHHHHHHHHHHHHhCCCCC---------c
Confidence 888888654 9999999999999988764 699999999999999999999999999999999999998 7
Q ss_pred Hhhhcccc--cccChhhHHHHHHhH
Q psy11677 341 NLADQGEM--DVSGLPCLLLFIRLG 363 (462)
Q Consensus 341 ~~~~~~~~--~~~~~~~~~~~~~~~ 363 (462)
|.+.|.++ +.++.+.+.+|.+.+
T Consensus 246 C~a~~rv~V~~~i~d~f~~~l~~~~ 270 (452)
T 3my7_A 246 CASEQAVIVVDEVYDEVKERFASHK 270 (452)
T ss_dssp TTCEEEEEEEGGGHHHHHHHHHTTT
T ss_pred cCCCcEEEEcHHHHHHHHHHHHHhC
Confidence 88888877 667777888887764
|
| >3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-13 Score=144.30 Aligned_cols=175 Identities=13% Similarity=0.048 Sum_probs=129.5
Q ss_pred HHHHHHHHHhCCchhhcCchhcHHH---------------HHHHHhhcccccccccc--CC------CCCC-CCceeeEE
Q psy11677 163 LVNSATWALDRGVSVVICNGMQKEA---------------IKQIVAGRKIGTFFTDA--SA------QSGG-TPVEVLAE 218 (462)
Q Consensus 163 L~~iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~i~t~~a~~--~d------~~~~-~PlGVi~~ 218 (462)
|..+++.|.++.++|..++..|.-+ ++.++...+ .+... +. ..++ .|+||+++
T Consensus 77 L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~P~GVV~~ 153 (506)
T 3rh9_A 77 LEDIRDGLKENREEIGRILCMEHGKPWKEAQGEVDYAAGFFDYCAKHIS---ALDSHTIPEKPKDCTWTVHYRPVGVTGL 153 (506)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGG---GGCCEECSCCGGGCEEEEEEEECCSEEE
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH---HhcCcccccCCCceeeEeecccceEEEE
Confidence 3338999999999999888777532 344444333 32211 10 1247 99999999
Q ss_pred E--EeCCCCcccccc-----------------cccccchHHHHHhhcCCC----CeEEeecC--HHHHHHHhcCCCCccE
Q psy11677 219 I--WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY----PLHSQVST--REEISDLLSMEKHIDL 273 (462)
Q Consensus 219 I--yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~----~~v~~v~~--r~~~~~ll~~~~~iDl 273 (462)
| |... ++.+.. +++-.|+ ..|++.+.++ +++++|+. ++....|++ +..||.
T Consensus 154 I~PwN~P--~~~~~~~~a~ALaaGN~VVlKps~~tp~t~-~~l~~l~~eaGlP~gvv~vv~g~~~~~g~~L~~-~p~vd~ 229 (506)
T 3rh9_A 154 IVPWNFP--IGMIAKKLSAALAAGCPSVIKPASETPLTM-IAFFSVMDKLDLPDGMVNLVMGKASVIGKVLCE-HKDVPM 229 (506)
T ss_dssp ECCSSST--THHHHHHHHHHHHHTCCEEEECCTTSCHHH-HHHHHHHTTTTCCTTSEEECCSCHHHHHHHHHH-CTTCCE
T ss_pred ECCCchH--HHHHHHHHHHHHHcCCEEEEEcCCccHHHH-HHHHHHHHHhCcChhhEEEEeCCChHHHHHHHh-CCCCCE
Confidence 9 6554 443221 7778888 8888888887 89999994 455566776 556999
Q ss_pred EeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 274 IIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 274 iIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
|.++||....+.|.+.+. .+||+....|+|++||++|||+++|++.++++|.++.|- .|.+...+..++.|
T Consensus 230 I~FTGS~~vG~~i~~~aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ----~C~a~~rvlV~~~i 302 (506)
T 3rh9_A 230 LSFTGSTEVGRKLIVDTAEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQ----TCVCANRIFVHEKV 302 (506)
T ss_dssp EEEESCHHHHHHHHHHTTTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGC----SSSSCCEEEEETTT
T ss_pred EEEECCHHHHHHHHHHhhhcCCceEEecCCCCceEECCCCCHHHHHHHHHHHHHHhCCC----CcccCcEEEEcHHH
Confidence 999999999999998872 489999999999999999999999999999999998885 24444444444443
|
| >4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-13 Score=145.06 Aligned_cols=175 Identities=12% Similarity=0.068 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccCC--
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDASA-- 206 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~d-- 206 (462)
+......||.|.+.... +++.|+++.++|.++...|.-+ +...++.++ ..+.+.+
T Consensus 66 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~---~~a~~~~~~ 142 (521)
T 4e4g_A 66 LAAAVESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTIDDAKGDIVRGLEVCE---FVIGIPHLQ 142 (521)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH---HHHTHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55556667776654322 8899999999998888776532 444444444 3332211
Q ss_pred --------------CCCCCCceeeEEE--EeCCCCccccc-----------------ccccccchHHHHHhhcCCC----
Q psy11677 207 --------------QSGGTPVEVLAEI--WKNETLNTTVP-----------------KKHAKTSQCKYFTKMLPRY---- 249 (462)
Q Consensus 207 --------------~~~~~PlGVi~~I--yEsr~~Pnv~~-----------------~~ea~~sn~~~l~~al~~~---- 249 (462)
..++.|+||+++| |... ...+. .+.+-.|+ ..|++.+.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P--~~~~~~~~a~ALaaGN~VVlKpse~tp~t~-~~l~~l~~eaGlP~ 219 (521)
T 4e4g_A 143 KSEFTEGAGPGIDMYSIRQPVGIGAGITPFNFP--GMIPMWMFAPAIACGNAFILKPSERDPSVP-IRLAELMIEAGLPA 219 (521)
T ss_dssp CEEEEEEEETTEEEEEEEEECCEEEEECCSSCT--THHHHHHHHHHHHTTCEEEEECCTTSTHHH-HHHHHHHHHTTCCT
T ss_pred cCcccccCCCCcceeEEEcCCcEEEEECCCcch--HHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHhCCCc
Confidence 1358999999999 5444 33211 16777888 7888777776
Q ss_pred CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 250 PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 250 ~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
+++++|+ +++....|++ +..||.|..+||....+.|.+.+. .+||+....|+|++||++|||+++|++.++.+|..
T Consensus 220 gvv~vv~g~~~~~~~L~~-~p~vd~I~FTGS~~vG~~i~~~aa~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~ 298 (521)
T 4e4g_A 220 GILNVVNGDKGAVDAILT-HPDIAAVSFVGSTPIARYVYGTAAMNGKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYG 298 (521)
T ss_dssp TSEEECCCCHHHHHHHHT-CTTCCEEEEESCHHHHHHHHHHHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHG
T ss_pred CeEEEEeCChHHHHHHHh-CCCcCEEEEECCHHHHHHHHHHHhhcCCCeeecCCCCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 8999999 6777777776 456999999999999999987652 49999999999999999999999999999999999
Q ss_pred CCCC
Q psy11677 327 LQGL 330 (462)
Q Consensus 327 ~~~~ 330 (462)
+.|-
T Consensus 299 n~GQ 302 (521)
T 4e4g_A 299 SAGE 302 (521)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 8774
|
| >3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-13 Score=145.00 Aligned_cols=189 Identities=16% Similarity=0.122 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH------HHHHHhhcccccccccc------
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA------IKQIVAGRKIGTFFTDA------ 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~------~~~~~~~~~i~t~~a~~------ 204 (462)
+......|+.|.+.... +++.|+++.++|.+++..|.-+ +..+++.++ ..+..
T Consensus 54 v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~eaev~~~~~~~~---~~a~~~~~~~~ 130 (517)
T 3r31_A 54 VERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQETIVADPTSGAD---AFEFFGGIAPS 130 (517)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHSHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---HHHHHhhhccc
Confidence 55556667776654333 8999999999998887776532 222222222 11111
Q ss_pred ----------C--CCCCCCCceeeEEE--EeCCCCccccc-----------------ccccccchHHHHHhhcCCC----
Q psy11677 205 ----------S--AQSGGTPVEVLAEI--WKNETLNTTVP-----------------KKHAKTSQCKYFTKMLPRY---- 249 (462)
Q Consensus 205 ----------~--d~~~~~PlGVi~~I--yEsr~~Pnv~~-----------------~~ea~~sn~~~l~~al~~~---- 249 (462)
+ -...+.|+||+++| |... ++.+. .+++-.|+ ..|++.+.++
T Consensus 131 ~~~g~~~~~~~~~~~~~~~P~GVV~~I~PwN~P--~~~~~~~~a~ALaaGN~VVlKps~~tp~t~-~~l~~ll~eaGlP~ 207 (517)
T 3r31_A 131 ALNGDYIPLGGDFAYTKRVPLGVCVGIGAWNYP--QQIACWKAAPALVAGNAMVFKPSENTPLGA-LKIAEILIEAGLPK 207 (517)
T ss_dssp HTCCCEEECSSSEEEEEEEECSEEEEECCSSSH--HHHHHHHHHHHHHTTCEEEEECCTTSCSHH-HHHHHHHHHTTCCT
T ss_pred cccCcccccCCCcceEEEcCccEEEEECCCcch--HHHHHHHHHHHHHcCCEEEEEcCcccHHHH-HHHHHHHHHhCcCc
Confidence 0 02357899999999 4333 33211 17778888 8888777776
Q ss_pred CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 250 PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 250 ~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
+++++|+ +++....|++ +..||.|..+||...-+.|.+.+ +.+||+....|+|++||++|||+++|++.++.+|+.
T Consensus 208 gvv~vv~g~~~~g~~L~~-~p~vd~I~FTGS~~~G~~i~~~aa~~lk~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~f~ 286 (517)
T 3r31_A 208 GLFNVIQGDRDTGPLLVN-HPDVAKVSLTGSVPTGRKVAAAAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFY 286 (517)
T ss_dssp TSEEECCCCTTHHHHHHT-CTTEEEEEEESCHHHHHHHHHHHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred ccEEEEECCHHHHHHHHh-CCCcCEEeccCCHHHHHHHHHHhhcCCCcEEEEcCCcCeEEEecCCCHHHHHHHHHHHHhc
Confidence 8999999 5666666665 56699999999998888887765 249999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHhhhcccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+.|- .|.+...+..|+.|
T Consensus 287 n~GQ----~C~a~~rvlV~~~i 304 (517)
T 3r31_A 287 SSGQ----VCSNGTRVFVQKKA 304 (517)
T ss_dssp CCHH----HHTTCEEEEEEGGG
T ss_pred CCCc----eeccCceEEEeHHH
Confidence 7776 45555555544443
|
| >3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.8e-13 Score=138.39 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcccccc
Q psy11677 149 VEVLAENVNLKMEI------------LVNSATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTF 200 (462)
Q Consensus 149 ~~~ia~~AK~As~~------------L~~iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~ 200 (462)
+......||.|... |..+++.|+++.++|..++..|.-+ ++.+++.++ .
T Consensus 30 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~~~~---~ 106 (457)
T 3lns_A 30 IDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEIGAVLHEIDFALAHLD---E 106 (457)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHTHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 44555556655443 2228899999999998887766432 333444333 2
Q ss_pred ccc---cC------C---CCCCCCceeeEEEEeCCCCccccc-----------------ccccccchHHHHHhhcCCC--
Q psy11677 201 FTD---AS------A---QSGGTPVEVLAEIWKNETLNTTVP-----------------KKHAKTSQCKYFTKMLPRY-- 249 (462)
Q Consensus 201 ~a~---~~------d---~~~~~PlGVi~~IyEsr~~Pnv~~-----------------~~ea~~sn~~~l~~al~~~-- 249 (462)
+.. .+ . ..++.|+||+++|++.--+++.+. .+++-.|+ ..|++.+.++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~alP 185 (457)
T 3lns_A 107 WVAPVSVPSPDIIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPLIGAIIGGNTCIIKPSETTPETS-AVIEKIIAEAFA 185 (457)
T ss_dssp HTSCEEECCCGGGCSCEEEEEEEECCEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHH-HHHHHHHHHHCC
T ss_pred hhccccccccccCCCcceEEEeecceEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHhCC
Confidence 221 00 0 135899999999987331132211 16777788 7777555444
Q ss_pred -CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 250 -PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 250 -~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
+++++|+ +++....|++ . .||.|.++||...-+.|.+.+. .+||+....|+|++||++|||+++|++.++++|+
T Consensus 186 ~gvv~vv~g~~~~~~~L~~-~-~vd~V~fTGS~~~G~~i~~~aa~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~ 263 (457)
T 3lns_A 186 PEYVAVIQGGRDENSHLLS-L-PFDFIFFTGSPNVGKVVMQAAAKHLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKF 263 (457)
T ss_dssp TTTEEECCCCHHHHHHHTT-S-CCSEEEEESCHHHHHHHHHHHHTTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HhhEEEecCCHHHHHHHhc-C-CCCEEEEECCHHHHHHHHHHHhhccCceEEECCCCCCCeECCCCCHHHHHHHHHHHHH
Confidence 9999999 6888888887 4 6999999999999999877652 4899999999999999999999999999999999
Q ss_pred CCCCC
Q psy11677 326 VLQGL 330 (462)
Q Consensus 326 ~~~~~ 330 (462)
.+.|-
T Consensus 264 ~n~GQ 268 (457)
T 3lns_A 264 INSGQ 268 (457)
T ss_dssp GGGGC
T ss_pred HhCCC
Confidence 99885
|
| >3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.3e-13 Score=140.75 Aligned_cols=176 Identities=18% Similarity=0.116 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhccccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRKIGTFF 201 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~i~t~~ 201 (462)
+......|+.|.+.... +++.|+++.++|..+...|.-+ ++..+...+ .+
T Consensus 51 v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~~~---~~ 127 (505)
T 3prl_A 51 VNDAIQGAKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKKSAIGEVSRTADIIRHTADEAL---RL 127 (505)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH---TC
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH---Hh
Confidence 55556666666553222 8999999999999888777532 333333222 11
Q ss_pred cc----c---C----C---CCCCCCceeeEEE--EeCCCCcccccc-----------------cccccchHHHHHhhcCC
Q psy11677 202 TD----A---S----A---QSGGTPVEVLAEI--WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPR 248 (462)
Q Consensus 202 a~----~---~----d---~~~~~PlGVi~~I--yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~ 248 (462)
.. . + . ...+.|+||+++| |... ++.+.. +.+-.|+ ..|++.+.+
T Consensus 128 ~g~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P--~~~~~~~~a~ALaaGN~VVlKpse~tp~ta-~~l~~ll~e 204 (505)
T 3prl_A 128 NGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYP--VNLAAAKIAPALVTGNTVVFKPATQGSLSG-IKMVEALAD 204 (505)
T ss_dssp CEEEEEGGGSTTTCSSEEEEEEEEECSEEEEEECSSST--THHHHHHHHHHHHTTCEEEEEECSTTHHHH-HHHHHHHHH
T ss_pred cCccccccccccccCCceeEEEEcCCcEEEEECCCccH--HHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHH
Confidence 11 0 1 0 1237899999999 6555 443211 6777788 888888877
Q ss_pred C----CeEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcc
Q psy11677 249 Y----PLHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSG 323 (462)
Q Consensus 249 ~----~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~na 323 (462)
+ +++++|+. ...+.+.|-.+..||.|..+||....+.|.+.+..+||+....|+|++||++|||+++|++.++.+
T Consensus 205 aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~ 284 (505)
T 3prl_A 205 AGAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERISEKAKMIPVVLELGGKDPAIVLDDADLKLTASQIVSG 284 (505)
T ss_dssp TTCCTTSEEECCCCHHHHHHHHHTCTTCCEEEEESCHHHHHHHHHHCCSSCEEEECCCCEEEEECTTCCHHHHHHHHHHH
T ss_pred hCcCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHccCCcEEEECCCCCCCccCCCCCHHHHHHHHHHH
Confidence 6 89999994 556655555566799999999999999999988448999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy11677 324 SRVLQGL 330 (462)
Q Consensus 324 k~~~~~~ 330 (462)
|+.+.|-
T Consensus 285 ~~~n~GQ 291 (505)
T 3prl_A 285 AFSYSGQ 291 (505)
T ss_dssp HHGGGGC
T ss_pred HHhcCCC
Confidence 9998887
|
| >2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-12 Score=139.44 Aligned_cols=180 Identities=10% Similarity=0.056 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHhCCchhhcCchhcHHH---------------HHHHHhhcc--ccc
Q psy11677 149 VEVLAENVNLKMEILV------------NSATWALDRGVSVVICNGMQKEA---------------IKQIVAGRK--IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~------------~iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~--i~t 199 (462)
+......||.|.+.+. .+++.|.++.++|.+++..|.-+ ++.++..++ .|.
T Consensus 50 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~g~ 129 (487)
T 2w8n_A 50 ARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGD 129 (487)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGCCCE
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5555566666654322 18999999999999888776532 333333322 011
Q ss_pred cccc-cCC---CCCCCCceeeEEEEeCCCCc-cccc-----------------ccccccchHHHHHhhcCCC----CeEE
Q psy11677 200 FFTD-ASA---QSGGTPVEVLAEIWKNETLN-TTVP-----------------KKHAKTSQCKYFTKMLPRY----PLHS 253 (462)
Q Consensus 200 ~~a~-~~d---~~~~~PlGVi~~IyEsr~~P-nv~~-----------------~~ea~~sn~~~l~~al~~~----~~v~ 253 (462)
.+.. .+. ..++.|+||+++|++.- .| +.+. .+.+-.|+ ..|++.+.++ ++++
T Consensus 130 ~~~~~~~~~~~~~~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~aGlP~gvv~ 207 (487)
T 2w8n_A 130 IIHTPAKDRRALVLKQPIGVAAVITPWN-FPSAMITRKVGAALAAGCTVVVKPAEDTPFSA-LALAELASQAGIPSGVYN 207 (487)
T ss_dssp EECCSCTTCEEEEEEEECCEEEEECCSS-STTHHHHHHHHHHHHHTCEEEEECCTTCCHHH-HHHHHHHHHHTCCTTSEE
T ss_pred ccccCCCCceeEEEEecceEEEEECCCc-chHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHHHHHHHhCCCCCeEE
Confidence 1100 010 12478999999998764 24 2211 16777888 7888777665 8999
Q ss_pred eec---C-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 254 QVS---T-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 254 ~v~---~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
+|+ . -..+.+.|-.+..||.|..+||....+.|.+.+. .+||+.+..|+|++||++|||+++|++.++++|+.+
T Consensus 208 vv~~~~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n 287 (487)
T 2w8n_A 208 VIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRN 287 (487)
T ss_dssp ECCCCHHHHHHHHHHHTTCTTEEEEEEEECHHHHHHHHHHHHTTTCEEEEEECEEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred EEecCCCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHHhccCCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhC
Confidence 998 3 2335554545678999999999999988877651 499999999999999999999999999999999998
Q ss_pred CCC
Q psy11677 328 QGL 330 (462)
Q Consensus 328 ~~~ 330 (462)
.|-
T Consensus 288 ~GQ 290 (487)
T 2w8n_A 288 TGQ 290 (487)
T ss_dssp CSC
T ss_pred CCC
Confidence 885
|
| >3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-12 Score=133.98 Aligned_cols=177 Identities=14% Similarity=0.055 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcc---------ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRK---------IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~---------i~t 199 (462)
+......||.|.+.+.. +++.|+++.++|..+...|.-+ +...++.++ -|.
T Consensus 44 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~~~~~~~~~~~ 123 (490)
T 3ju8_A 44 VDAAVCAAREAFPAWARRPLEQRIELLERFAATLKSRADELARVIGEETGKPLWESATEVTSMVNKVAISVQAFRERTGE 123 (490)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55666677776654333 8899999999998888776532 222222222 000
Q ss_pred cccccCC---CCCCCCceeeEEEE--eCCCCccccc-----------------ccccccchHHHHHhhcCCC----CeEE
Q psy11677 200 FFTDASA---QSGGTPVEVLAEIW--KNETLNTTVP-----------------KKHAKTSQCKYFTKMLPRY----PLHS 253 (462)
Q Consensus 200 ~~a~~~d---~~~~~PlGVi~~Iy--Esr~~Pnv~~-----------------~~ea~~sn~~~l~~al~~~----~~v~ 253 (462)
.....+. ...+.|+||+++|. ... ...+. .+.+-.|+ ..|++.+.++ ++++
T Consensus 124 ~~~~~~~~~~~~~~~P~GVv~~I~PwN~P--~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~aGlP~gvv~ 200 (490)
T 3ju8_A 124 KSGPLADATAVLRHKPHGVVAVFGPYNFP--GHLPNGHIVPALLAGNCVVFKPSELTPKVA-ELTLKAWIQAGLPAGVLN 200 (490)
T ss_dssp EEEEETTEEEEEEEEECSEEEEECCSSST--THHHHHHHHHHHHHTCEEEEECCTTCHHHH-HHHHHHHHHTTCCTTTEE
T ss_pred ccccCCCCeeeEEECCCCEEEEECCCcch--HHHHHHHHHHHHHcCCeEEEECCCCCcHHH-HHHHHHHHHhCcCcCeEE
Confidence 0000111 12378999999994 333 33211 16677787 7777777766 8999
Q ss_pred eec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--Ccce--eeeccceeEEEEccCCCHHHHHHHHHcccCCCC
Q psy11677 254 QVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPV--LGHAEGICHVYVDKDADIRKAIKIARSGSRVLQ 328 (462)
Q Consensus 254 ~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPv--i~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~ 328 (462)
+|+ +++....|++ +..||.|..+||....+.|.+.+. ..|| ++.| |+|++||++|||+++|++.++.+|+.+.
T Consensus 201 vv~g~~~~~~~L~~-~~~v~~V~fTGS~~~g~~i~~~aa~~~~~v~~lElG-Gk~p~iV~~dADl~~Aa~~i~~~~~~n~ 278 (490)
T 3ju8_A 201 LVQGGRETGVALAA-HRGLDGLFFTGSSRTGNLLHSQFGGQPQKILALEMG-GNNPLVVEEVADLDAAVYTIIQSAFISA 278 (490)
T ss_dssp ECCCSHHHHHHHHT-CTTCSEEEEESCHHHHHHHHHHTTTCTTSEEEEECC-CCEEEEECCCSCHHHHHHHHHHHHHGGG
T ss_pred EEeCCHHHHHHHHh-CCCcCEEEEECcHHHHHHHHHHhhccCCCcEEeecC-CCCeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 999 5666666775 556999999999999999998652 3786 6676 9999999999999999999999999998
Q ss_pred CC
Q psy11677 329 GL 330 (462)
Q Consensus 329 ~~ 330 (462)
|-
T Consensus 279 GQ 280 (490)
T 3ju8_A 279 GQ 280 (490)
T ss_dssp GC
T ss_pred CC
Confidence 85
|
| >1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-12 Score=136.56 Aligned_cols=190 Identities=12% Similarity=0.066 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTF 200 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~ 200 (462)
+......||.|.+.+.. +++.|.++.++|.+++..|.-+ ++.++..++ +
T Consensus 62 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~~~~---~ 138 (495)
T 1wnd_A 62 VDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAAR---C 138 (495)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 55556666766553221 8999999999998877766422 344444433 2
Q ss_pred cccc------CC---CCCCCCceeeEEEEeCCCCcc-c----------------c-cccccccchHHHHHhhcCCC---C
Q psy11677 201 FTDA------SA---QSGGTPVEVLAEIWKNETLNT-T----------------V-PKKHAKTSQCKYFTKMLPRY---P 250 (462)
Q Consensus 201 ~a~~------~d---~~~~~PlGVi~~IyEsr~~Pn-v----------------~-~~~ea~~sn~~~l~~al~~~---~ 250 (462)
+..- +. ..++.|+||+++|++.. .|- . + +.+.+-.|+ ..|++.+.++ +
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~P~GVV~~I~PwN-~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~-~~l~~l~~ealP~g 216 (495)
T 1wnd_A 139 LNGLAAGEYLEGHTSMIRRDPLGVVASIAPWN-YPLMMAAWKLAPALAAGNCVVLKPSEITPLTA-LKLAELAKDIFPAG 216 (495)
T ss_dssp CEEECBEEEETTEEEEEEEEECSEEEEECCSS-SHHHHHHHHHHHHHHTTCEEEEECCTTCCHHH-HHHHHHHTTTSCTT
T ss_pred hcCccccCCCCCceeEEeeecCCeEEEECCCc-chHHHHHHHHHHHHHcCCeeEeeCCCCChHHH-HHHHHHHHHhCCcC
Confidence 2111 11 12478999999999766 462 1 1 117778888 8888777776 9
Q ss_pred eEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++++|+ +++....|++ +..||.|..+||....+.|.+.+. .+||+....|+|++||++|||+++|++.++++|..
T Consensus 217 vv~vv~g~~~~~g~~L~~-~p~vd~I~FTGS~~~G~~i~~~aa~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~ 295 (495)
T 1wnd_A 217 VVNILFGRGKTVGDPLTG-HPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYY 295 (495)
T ss_dssp SEEECCCCTTTTHHHHHT-CTTEEEEEEESCHHHHHHHHHHHGGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTG
T ss_pred eEEEEeCCCHHHHHHHHh-CCCcCEEEEECcHHHHHHHHHHHHhcCCccccccCCCCeEEECCcCCHHHHHHHHHHHHHh
Confidence 999998 3566667776 567999999999999999988762 49999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHhhhcccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+.|= .|.+...+..|..|
T Consensus 296 n~GQ----~C~a~~rvlV~~~i 313 (495)
T 1wnd_A 296 NAGQ----DCTAACRIYAQKGI 313 (495)
T ss_dssp GGGC----STTCCCEEEEETTT
T ss_pred cCCC----CCCCCcEEEecchh
Confidence 8874 34444444444443
|
| >1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-12 Score=139.76 Aligned_cols=176 Identities=14% Similarity=0.030 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhccccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRKIGTFF 201 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~i~t~~ 201 (462)
+......|+.|.+.+.. +++.|.++.++|.+....|.-+ ++.++..++ ++
T Consensus 76 v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~---~~ 152 (516)
T 1uzb_A 76 AEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARAAL---RY 152 (516)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHG---GG
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH---Hh
Confidence 55556666766553221 8999999999998887766432 444444444 33
Q ss_pred ccc-------CC---CCCCCCceeeEEEEeCCCCc-cccc-----------------ccccccchHHHHHhhcCCC----
Q psy11677 202 TDA-------SA---QSGGTPVEVLAEIWKNETLN-TTVP-----------------KKHAKTSQCKYFTKMLPRY---- 249 (462)
Q Consensus 202 a~~-------~d---~~~~~PlGVi~~IyEsr~~P-nv~~-----------------~~ea~~sn~~~l~~al~~~---- 249 (462)
..- +. ..++.|+||+++|++.. .| ..+. .+.+-.|+ ..|++.+.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN-~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta-~~l~~l~~eaGlP~ 230 (516)
T 1uzb_A 153 RYPAVEVVPYPGEDNESFYVPLGAGVVIAPWN-FPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVG-AKVFEIFHEAGFPP 230 (516)
T ss_dssp CSSCCCCCCCTTEEEEEEEEECCEEEEECCSS-STTHHHHHHHHHHHHTTCEEEEECCGGGHHHH-HHHHHHHHHHTCCT
T ss_pred cCCcccccCCCCceEEEEEeccceEEEECCCc-cHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHH-HHHHHHHHHhCCCc
Confidence 221 10 12478999999998765 37 2111 16667777 7777666665
Q ss_pred CeEEeecC--HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--------CcceeeeccceeEEEEccCCCHHHHHHH
Q psy11677 250 PLHSQVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--------HIPVLGHAEGICHVYVDKDADIRKAIKI 319 (462)
Q Consensus 250 ~~v~~v~~--r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--------~iPvi~~~~G~ch~yvd~~ad~~~a~~i 319 (462)
+++++|+. ++....|++ +..||.|..+||....+.|.+.+. .+||+....|+|++||++|||+++|++.
T Consensus 231 gvv~vv~g~~~~~~~~L~~-~~~v~~I~FTGS~~~G~~i~~~aa~~~~~~~~~~~v~lElGGk~p~iV~~dADl~~Aa~~ 309 (516)
T 1uzb_A 231 GVVNFLPGVGEEVGAYLVE-HPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEG 309 (516)
T ss_dssp TSEEECCCSSSHHHHHHHT-CTTCCEEEEESCHHHHHHHHHHHTSCCTTCCSCCEEEEECCCCEEEEECTTSCHHHHHHH
T ss_pred CeEEEEeCCCchhhhhhhc-CCCcCEEEecCCHHHHHHHHHHhhhccccccccceeEEecCCccceeECCCCCHHHHHHH
Confidence 99999983 555666776 667999999999999999987542 5999999999999999999999999999
Q ss_pred HHcccCCCCCC
Q psy11677 320 ARSGSRVLQGL 330 (462)
Q Consensus 320 ~~nak~~~~~~ 330 (462)
++++|..+.|-
T Consensus 310 i~~~~~~n~GQ 320 (516)
T 1uzb_A 310 VVVSAYGFQGQ 320 (516)
T ss_dssp HHHHHHGGGGC
T ss_pred HHHHHHhCCCC
Confidence 99999998866
|
| >2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-12 Score=139.04 Aligned_cols=176 Identities=13% Similarity=0.118 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---- 204 (462)
+......||.|.+.+.. +++.|.++.++|..+...|.-+ +..+++.++ ..+..
T Consensus 66 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~---~~a~~~~~~ 142 (515)
T 2d4e_A 66 VDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVLRIVRAQVARAAENFA---FYAEYAEHA 142 (515)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHTTGGGT
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55556677776654332 8999999999998887766532 333333333 22211
Q ss_pred -----C--C-----CCCCCCceeeEEEEeC-CCCccc----------------c--cccccccchHHHHHhhcCCC----
Q psy11677 205 -----S--A-----QSGGTPVEVLAEIWKN-ETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY---- 249 (462)
Q Consensus 205 -----~--d-----~~~~~PlGVi~~IyEs-r~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~---- 249 (462)
+ + ..++.|+||+++|++. . |-. + +.+++-.|+ ..|++.+.++
T Consensus 143 ~g~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~--P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~~eaGlP~ 219 (515)
T 2d4e_A 143 MEDRTFPVDRDWLYYTVRVPAGPVGIITPWNA--PLMLSTWRIAPALAFGNTVVLKPAEWSPFTA-TKLAEILKEADLPP 219 (515)
T ss_dssp TCEEECCBTTTEEEEEEEEECCCEEEECCSSS--HHHHHHHHHHHHHHTTCCEEEECCTTSCHHH-HHHHHHHHHTTCCT
T ss_pred cCcccccCCCCceeEEEEecCCceEEECCCCc--hhhhhhhhhhHHHHcCCeeeecCCCCcHHHH-HHHHHHHHHhCCCc
Confidence 1 1 1247899999999875 4 621 1 116777888 8888777776
Q ss_pred CeEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 250 PLHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 250 ~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
+++++|+. ...+.+.|-.+..||.|..+||...-+.|.+.+. .+||+....|+|++||++|||+++|++.++.+|..
T Consensus 220 gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~I~~~aa~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~ 299 (515)
T 2d4e_A 220 GVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVMRNAADHLKRLSPELGGKSPALVFADADLERALDAVVFQIFS 299 (515)
T ss_dssp TSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHGGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHG
T ss_pred CeEEEEeCCchHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHHhhcCCceEecCCCcCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 89999994 3345555555667999999999999998887763 39999999999999999999999999999999999
Q ss_pred CCCC
Q psy11677 327 LQGL 330 (462)
Q Consensus 327 ~~~~ 330 (462)
+.|-
T Consensus 300 n~GQ 303 (515)
T 2d4e_A 300 FNGE 303 (515)
T ss_dssp GGGC
T ss_pred cCCC
Confidence 8884
|
| >3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.9e-13 Score=139.37 Aligned_cols=190 Identities=13% Similarity=0.059 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTF 200 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~ 200 (462)
+......|++|.+.+.. +++.|+++.++|.+.+..|.-. ++.++..++ .
T Consensus 47 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~~~~---~ 123 (478)
T 3ty7_A 47 VDKAVEAADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPLSLSERVHYQMGLNHFVAARDALD---N 123 (478)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHH---H
Confidence 55566667776654332 8999999999998887766532 222332222 2
Q ss_pred ccccC-C---CCCCCCceeeEEE--EeCCCCcccccc-----------------cccccchHHHHHhhcCCC----CeEE
Q psy11677 201 FTDAS-A---QSGGTPVEVLAEI--WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY----PLHS 253 (462)
Q Consensus 201 ~a~~~-d---~~~~~PlGVi~~I--yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~----~~v~ 253 (462)
+.... . ...+.|+||+++| |... ++.+.. +++-.|+ ..|++.+.++ ++++
T Consensus 124 ~~~~~~~~~~~~~~~P~GVv~~I~PwN~P--~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~~~~~aGlP~gvv~ 200 (478)
T 3ty7_A 124 YEFEERRGDDLVVKEAIGVSGLITPWNFP--TNQTSLKLAAAFAAGSPVVLKPSEETPFAA-VILAEIFDKVGVPKGVFN 200 (478)
T ss_dssp CCSEEEETTEEEEEEECCCEEEECCSSST--THHHHHHHHHHHHHTCCEEEECCTTSCHHH-HHHHHHHHHHTCCTTTEE
T ss_pred hhcccCCccceEEecCceEEEEECCCcch--HHHHHHHHHHHHHcCCeEEEECCCcchHHH-HHHHHHHHHhCcCcCeEE
Confidence 11110 0 1358999999999 7766 653222 7777888 8888766665 8999
Q ss_pred eecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 254 QVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 254 ~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
+|+. ...+.+.|-.+..||.|..+||...-+.|.+.+ +..||+....|+|++||++|||+++|++.++.+|+.+.|-
T Consensus 201 vv~g~~~~~~~~L~~~~~v~~v~fTGS~~~G~~i~~~aa~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ 280 (478)
T 3ty7_A 201 LVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKAAKDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQ 280 (478)
T ss_dssp ECCCCTTTTHHHHHHCTTCCEEEECSCHHHHCC--CSTTTTTCEEECCCCCCCEEEECTTSCHHHHHHHHHHHHHGGGGC
T ss_pred EEECCChHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHHhcCCceEEecCCCCCcccCCCCCHHHHHHHHHHHHHHhCCC
Confidence 9994 555666665667799999999999888888766 2378888888999999999999999999999999998885
Q ss_pred CCchhHHHHHHhhhcccc
Q psy11677 331 NPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~ 348 (462)
.|.+...+..++.|
T Consensus 281 ----~C~a~~rvlV~~~i 294 (478)
T 3ty7_A 281 ----VCTAGTRVLVPNKI 294 (478)
T ss_dssp ----CTTCCCEEEEETTT
T ss_pred ----CccCCCeEEEcHHH
Confidence 34444444444443
|
| >3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-12 Score=138.82 Aligned_cols=176 Identities=11% Similarity=0.040 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhccccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRKIGTFF 201 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~i~t~~ 201 (462)
+......||.|.+.+.. +++.|+++.++|...+..|.-+ ++.++..++ .+
T Consensus 65 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~~~---~~ 141 (528)
T 3v4c_A 65 VNRACEAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPEARLNGERGRTTGQLRLFADHIE---KG 141 (528)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHh---hc
Confidence 56666777776654322 8999999999999888776532 445555444 21
Q ss_pred ccc--------C------C---CCCCCCceeeEEEEeCCCCcccc-c---c----------------cccccchHHHHHh
Q psy11677 202 TDA--------S------A---QSGGTPVEVLAEIWKNETLNTTV-P---K----------------KHAKTSQCKYFTK 244 (462)
Q Consensus 202 a~~--------~------d---~~~~~PlGVi~~IyEsr~~Pnv~-~---~----------------~ea~~sn~~~l~~ 244 (462)
..+ + . ..++.|+||+++|...- .|-.+ . . +++-.|+ ..|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN-~P~~~~~~~~~~a~ALaaGN~VVlKps~~tp~t~-~~l~~ 219 (528)
T 3v4c_A 142 DYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGASN-FPLAFSTAGGDTAAALAAGCPVVVKGHSAHPGTG-EIVAE 219 (528)
T ss_dssp GGGCCEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSS-STTTTSTTSHHHHHHHHHTCCEEEECCTTCHHHH-HHHHH
T ss_pred cccccccccccccccCCCCCcceeEeeCCcEEEEECCCc-chHHHhhhhhhhHHHHhcCCEEEEECCCCCcHHH-HHHHH
Confidence 111 1 0 12489999999994322 23221 0 1 6677777 77773
Q ss_pred ----hcCCC----CeEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--C--cceeeeccceeEEEEccC
Q psy11677 245 ----MLPRY----PLHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--H--IPVLGHAEGICHVYVDKD 310 (462)
Q Consensus 245 ----al~~~----~~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~--iPvi~~~~G~ch~yvd~~ 310 (462)
+|.++ +++++|+ +++....|++ +..||.|.++||....+.|.+.+. . +||+.+..|+|++||++|
T Consensus 220 l~~~~l~~aGlP~gvv~vv~g~~~~~g~~L~~-~p~v~~V~fTGS~~~G~~i~~~aa~~~~~~pv~lElGGk~p~iV~~d 298 (528)
T 3v4c_A 220 AVDAAIRKTGVHPGVFSLIQGGSRDVGHALVQ-HPHIKAVGFTGSLAGGRALFDLCAARPEPIPFFGELGSVNPMFLLPE 298 (528)
T ss_dssp HHHHHHHHHTCCGGGEEEECCCCHHHHHHHHH-CTTCCEEEEESCHHHHHHHHHHHHHSSSCCCEEEECCCCCCEEECHH
T ss_pred HHHHHHHhcCCCcCeEEEEeCCCHHHHHHHHh-CCCCCEEEEECChHHHHHHHHHHhhccCCCceEEecCCCCeEEECCC
Confidence 44444 8999998 3566666776 567999999999999999888762 2 899999999999999999
Q ss_pred C---CHHHHHHHHHcccCCCCCC
Q psy11677 311 A---DIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 311 a---d~~~a~~i~~nak~~~~~~ 330 (462)
| |+++|++.++++|+++.|-
T Consensus 299 Ad~~dl~~Aa~~i~~~~~~n~GQ 321 (528)
T 3v4c_A 299 ALKARAETLGQGWAGSLTMGAGQ 321 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGC
T ss_pred CChhhHHHHHHHHHHHHHhcCCC
Confidence 9 8999999999999998885
|
| >3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.8e-12 Score=132.32 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---- 204 (462)
+......|++|.+.+.. +++.|.++.++|..+...|.-. +..+++.++ ..+..
T Consensus 49 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~---~~a~~~~~~ 125 (481)
T 3jz4_A 49 TRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIE---WFAEEGKRI 125 (481)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHGGGC
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55566667776654333 8899999999998887766532 333333333 22211
Q ss_pred -----C----C---CCCCCCceeeEEE--EeCCCCccccc-----------------ccccccchHHHHHhhcCCC----
Q psy11677 205 -----S----A---QSGGTPVEVLAEI--WKNETLNTTVP-----------------KKHAKTSQCKYFTKMLPRY---- 249 (462)
Q Consensus 205 -----~----d---~~~~~PlGVi~~I--yEsr~~Pnv~~-----------------~~ea~~sn~~~l~~al~~~---- 249 (462)
+ . ..++.|+||+++| |... ..... .+.+-.|+ ..|++.+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P--~~~~~~~~~~ALaaGN~VVlKps~~tp~~~-~~l~~l~~~aGlP~ 202 (481)
T 3jz4_A 126 YGDTIPGHQADKRLIVIKQPIGVTAAITPWNFP--AAMITRKAGPALAAGCTMVLKPASQTPFSA-LALAELAIRAGVPA 202 (481)
T ss_dssp CEEEECCSSTTEEEEEEEEECCEEEEECCSSST--THHHHHHHHHHHHHTCEEEEECCTTSCHHH-HHHHHHHHHHTCCT
T ss_pred cCccccccCCCceEEEEEcCccEEEEECCCcch--HHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHhCcCC
Confidence 1 0 1248899999999 4333 33211 16677787 7777777665
Q ss_pred CeEEeecC--HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 250 PLHSQVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 250 ~~v~~v~~--r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
+++++|+. ++....|++ +..||.|..+||....+.|.+.+. ..||+....|+|++||++|||+++|++.++.+|+
T Consensus 203 gvv~vv~g~~~~~g~~L~~-~p~v~~I~fTGS~~~g~~i~~~aa~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~ 281 (481)
T 3jz4_A 203 GVFNVVTGSAGAVGNELTS-NPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKF 281 (481)
T ss_dssp TTEEECCBCTHHHHHHHHH-CTTEEEEEEESCHHHHHHHHHHHTTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCChHHHHHHHh-CCCcCEEEEECCHHHHHHHHHHHhhcCCceEEecCCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 89999983 444455554 566999999999999999888662 3899999999999999999999999999999999
Q ss_pred CCCCC
Q psy11677 326 VLQGL 330 (462)
Q Consensus 326 ~~~~~ 330 (462)
.+.|-
T Consensus 282 ~n~GQ 286 (481)
T 3jz4_A 282 RNAGQ 286 (481)
T ss_dssp GGGGC
T ss_pred HhCCC
Confidence 98885
|
| >3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6e-12 Score=132.45 Aligned_cols=174 Identities=16% Similarity=0.152 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---- 204 (462)
+......|++|.+.+.. +++.|+++.++|..+...|.-. +...++.++ ..+..
T Consensus 31 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~---~~a~~~~~~ 107 (462)
T 3etf_A 31 IEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQARAEVTKSAALCD---WYAEHGPAM 107 (462)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHhHHHh
Confidence 55666667776654222 8899999999998877765422 222222222 11111
Q ss_pred --------CC---CCCCCCceeeEEE--EeCCCCcccccc-----------------cccccchHHHHHhhcCCC----C
Q psy11677 205 --------SA---QSGGTPVEVLAEI--WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 205 --------~d---~~~~~PlGVi~~I--yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~----~ 250 (462)
+. ...+.|+||+++| |... ++.+.. +.+-.|+ ..|.+.+.++ +
T Consensus 108 ~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P--~~~~~~~~~~ALaaGN~VvlKps~~tp~~~-~~l~~~l~~aglP~g 184 (462)
T 3etf_A 108 LNPEPTLVENQQAVIEYRPLGVILAIMPWNFP--LWQVLRGAVPILLAGNSYLLKHAPNVTGCA-QMIARILAEAGTPAG 184 (462)
T ss_dssp TSCEECSSGGGCEEEEEEECSEEEEECCSSST--THHHHHHHHHHHHTTCEEEEECCTTCHHHH-HHHHHHHHHTTCCBT
T ss_pred cCCcccCCCCceeEEEeecCcEEEEECCCchH--HHHHHHHHHHHHhcCCEEEEECCCCCcHHH-HHHHHHHHHhCCCcC
Confidence 11 1237799999999 6665 543222 6677777 7777777776 8
Q ss_pred eEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++++|+ +++....|++. ..||.|.-.||...-+.|.+.+ .+-++++.| |+|++||++|||+++|++.++.+|++
T Consensus 185 v~~vv~g~~~~~~~l~~~-~~v~~v~fTGS~~~g~~i~~~aa~~~~~v~lElG-Gk~p~iV~~dADl~~Aa~~i~~~~~~ 262 (462)
T 3etf_A 185 VYGWVNANNEGVSQMIND-PRIAAVTVTGSVRAGAAIGAQAGAALKKCVLELG-GSDPFIVLNDADLELAVKAAVAGRYQ 262 (462)
T ss_dssp TEEECCCCHHHHHHHHTS-TTEEEEEEESCHHHHHHHHHHHHHTTCCEEEECC-CCEEEEECTTSCHHHHHHHHHHHHHG
T ss_pred eEEEEECCHHHHHHHhcC-CCCCEEEEeCCchHHHHHHHHHhccCCceEEEcC-CCCccEECCCCCHHHHHHHHHHHHHh
Confidence 999999 67777777764 4699999999998777765543 124455555 99999999999999999999999999
Q ss_pred CCCC
Q psy11677 327 LQGL 330 (462)
Q Consensus 327 ~~~~ 330 (462)
+.|-
T Consensus 263 n~GQ 266 (462)
T 3etf_A 263 NTGQ 266 (462)
T ss_dssp GGGC
T ss_pred cCCC
Confidence 9885
|
| >2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6e-12 Score=133.13 Aligned_cols=177 Identities=12% Similarity=0.066 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccCC--
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDASA-- 206 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~d-- 206 (462)
+......|+.|.+.... +++.|.++.++|.++...|.-+ +..+++.++ ..+...+
T Consensus 46 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~---~~a~~~~~~ 122 (479)
T 2imp_A 46 ARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYID---YMAEWARRY 122 (479)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHTTTTTC
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 45555666666554332 8899999999988877766432 334444444 2222111
Q ss_pred --------------CCCCCCceeeEEEEeCCCCcc-c----------------c-cccccccchHHHHHhhcCCC----C
Q psy11677 207 --------------QSGGTPVEVLAEIWKNETLNT-T----------------V-PKKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 207 --------------~~~~~PlGVi~~IyEsr~~Pn-v----------------~-~~~ea~~sn~~~l~~al~~~----~ 250 (462)
..++.|+||+++|+..- .|- . + +.+.+-.|+ ..|++.+.++ +
T Consensus 123 ~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~aGlP~g 200 (479)
T 2imp_A 123 EGEIIQSDRPGENILLFKRALGVTTGILPWN-FPFFLIARKMAPALLTGNTIVIKPSEFTPNNA-IAFAKIVDEIGLPRG 200 (479)
T ss_dssp CCEEECCSSTTEEEEEEEEECSEEEEECCSS-SHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH-HHHHHHHHHHTCCTT
T ss_pred hCCccccCCCCceeEEEEeccceEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCccchHHH-HHHHHHHHHhCCCcC
Confidence 12478999999997432 231 1 1 116777888 7777666665 8
Q ss_pred eEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 251 LHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 251 ~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
++++|+ +.+.+.+.|-.+..||.|..+||....+.|.+.+. .+||+....|+|++||++|||+++|++.++++|..+
T Consensus 201 vv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa~~~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n 280 (479)
T 2imp_A 201 VFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATAAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVIN 280 (479)
T ss_dssp SEEECCSCTTTHHHHHHHCTTEEEEEEESCHHHHHHHHHHHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHTTSSTT
T ss_pred eEEEEECCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHHhccCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhc
Confidence 999999 45555555545567999999999999998887652 499999999999999999999999999999999998
Q ss_pred CCC
Q psy11677 328 QGL 330 (462)
Q Consensus 328 ~~~ 330 (462)
.|-
T Consensus 281 ~GQ 283 (479)
T 2imp_A 281 SGQ 283 (479)
T ss_dssp TTC
T ss_pred CCC
Confidence 885
|
| >3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-12 Score=134.70 Aligned_cols=188 Identities=16% Similarity=0.067 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccCC--
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDASA-- 206 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~d-- 206 (462)
+......|+.|.+.+.. +++.|+++.++|.+++..|.-. +..+++.++ ..+...+
T Consensus 52 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~---~~a~~~~~~ 128 (508)
T 3r64_A 52 VDAAYEAAKKAQAEWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTRSKANLEITLAGNITK---ESASFPGRV 128 (508)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH---HHTTSTTTC
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHHhhhh
Confidence 55556667766654333 8899999999998887776532 444445554 3333221
Q ss_pred --------------CCCCCCceeeEEE--EeCCCCcccccc-----------------cccccchHHHHHhhcCCC----
Q psy11677 207 --------------QSGGTPVEVLAEI--WKNETLNTTVPK-----------------KHAKTSQCKYFTKMLPRY---- 249 (462)
Q Consensus 207 --------------~~~~~PlGVi~~I--yEsr~~Pnv~~~-----------------~ea~~sn~~~l~~al~~~---- 249 (462)
...+.|+||+++| |... ++.+.. +.+-.|+...|.+.+.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P--~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~~l~~ll~~aGlP~ 206 (508)
T 3r64_A 129 HGRISPSNTPGKENRVYRVAKGVVGVISPWNFP--LNLSIRSVAPALAVGNAVVIKPASDTPVTGGVIPARIFEEAGVPA 206 (508)
T ss_dssp CEEEECCSSTTEEEEEEEEECSEEEEECCSSSH--HHHHHHHHHHHHHTTCEEEEECCTTCHHHHTHHHHHHHHTTTCCT
T ss_pred cCcccccCCCCceeEEEEecceEEEEECCCcch--HHHHHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHHhCcCc
Confidence 1247899999999 5444 332211 444444413344777776
Q ss_pred CeEEeec-C-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhC----CCcceeeeccceeEEEEccCCCHHHHHHHHHcc
Q psy11677 250 PLHSQVS-T-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS----QHIPVLGHAEGICHVYVDKDADIRKAIKIARSG 323 (462)
Q Consensus 250 ~~v~~v~-~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s----~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~na 323 (462)
+++++|+ + ++....|++ +..||.|..+||....+.|.+.+ +.+||+....|+|++||++|||+++|++-++.+
T Consensus 207 gvv~vv~g~~~~~g~~L~~-~p~vd~I~fTGS~~~g~~i~~~aa~~~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~ 285 (508)
T 3r64_A 207 GVISTVAGAGSEIGDHFVT-HAVPKLISFTGSTPVGRRVGELAINGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVG 285 (508)
T ss_dssp TTEEECCCCTTTTHHHHHH-CSSCSEEEEESCHHHHHHHHHHHHSSSSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEeCCCHHHHHHHhh-CCCccEEEEECCHHHHHHHHHHhhcccCCCceEeecCCcCceEECCCCCHHHHHHHHHHH
Confidence 8999999 3 677777887 66799999999999999998865 358999999999999999999999999999999
Q ss_pred cCCCCCCCCchhHHHHHHhhhcc
Q psy11677 324 SRVLQGLNPEDRAKAIYNLADQG 346 (462)
Q Consensus 324 k~~~~~~~~~~~~~~~~~~~~~~ 346 (462)
|...-|- .|.+...+..++
T Consensus 286 ~~~n~GQ----~C~a~~rvlV~~ 304 (508)
T 3r64_A 286 AFLHQGQ----ICMSINRVIVDA 304 (508)
T ss_dssp HHTSTTC----TTTCCSEEEEEH
T ss_pred HHhcCCC----CcccCcEEEEeh
Confidence 8876554 344444444333
|
| >1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.9e-12 Score=134.03 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=119.5
Q ss_pred HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcccccccccc----CC----CCCCCCceeeEEEEe
Q psy11677 166 SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTDA----SA----QSGGTPVEVLAEIWK 221 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~~----~d----~~~~~PlGVi~~IyE 221 (462)
+++.|+++.++|......|.-+ ++.++..++ ++..- .. ..++.|+||+++|++
T Consensus 92 ~a~~l~~~~~ela~~~~~e~Gk~~~e~~~~ev~~~~~~~~~~a~~~~---~~~g~~~~~~~~~~~~~~~~P~GVV~~I~P 168 (501)
T 1bxs_A 92 LADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWAD---KIQGRTIPMDGNFFTYTRSEPVGVCGQIIP 168 (501)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTCCHHHHHHTHHHHHHHHHHHHHHHGG---GCCEEEECCSSSEEEEEEEEECCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH---HhhCCeeeccCCcceeEEecCCceEEEECC
Confidence 8999999999998887666432 444444444 32211 11 134889999999987
Q ss_pred CCCCcc-c----------------c-cccccccchHHHHHhhcCCC----CeEEeecC--HHHHHHHhcCCCCccEEeec
Q psy11677 222 NETLNT-T----------------V-PKKHAKTSQCKYFTKMLPRY----PLHSQVST--REEISDLLSMEKHIDLIIPR 277 (462)
Q Consensus 222 sr~~Pn-v----------------~-~~~ea~~sn~~~l~~al~~~----~~v~~v~~--r~~~~~ll~~~~~iDliIPr 277 (462)
.. .|- . + +.+.+-.|+ ..|++.+.++ +++++|+. ++....|++ +..||.|..+
T Consensus 169 wN-~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~aGlP~gv~~vv~g~~~~~g~~L~~-~~~v~~I~FT 245 (501)
T 1bxs_A 169 WN-FPLLMFLWKIGPALSCGNTVVVKPAEQTPLTA-LHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISS-HMDVDKVAFT 245 (501)
T ss_dssp SS-SHHHHHHHHHHHHHHTTCEEEEECCTTCCHHH-HHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHT-CTTCSEEEEE
T ss_pred Cc-chHHHHHHHHHHHHHcCCeeeccCCCccHHHH-HHHHHHHHHhCCCcceEEEEecCchHHHHHHHh-CCCcCEEEEE
Confidence 65 462 1 1 116777788 7788766665 99999983 445555555 6679999999
Q ss_pred CChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 278 GSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 278 G~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
||...-+.|.+.+ +.+||.....|+|++||++|||+++|++.++++|..+.|=
T Consensus 246 GS~~~G~~i~~~aa~~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ 301 (501)
T 1bxs_A 246 GSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQ 301 (501)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTTTTC
T ss_pred CCHHHHHHHHHHhhhccCCcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999888763 2599999999999999999999999999999999998884
|
| >1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.2e-12 Score=133.92 Aligned_cols=176 Identities=14% Similarity=0.128 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccC---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDAS--- 205 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~--- 205 (462)
+......||.|.+.... +++.|.++.++|......|.-+ +..+++.++ ..+...
T Consensus 60 v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~---~~a~~~~~~ 136 (503)
T 1a4s_A 60 VDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITEAEYDIDAAWQCIE---YYAGLAPTL 136 (503)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHGGGC
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55555666666543221 8899999999988877665422 333333333 111111
Q ss_pred ---------C---CCCCCCceeeEEEEeCCCCcc-c----------------c-cccccccchHHHHHhhcCCC----Ce
Q psy11677 206 ---------A---QSGGTPVEVLAEIWKNETLNT-T----------------V-PKKHAKTSQCKYFTKMLPRY----PL 251 (462)
Q Consensus 206 ---------d---~~~~~PlGVi~~IyEsr~~Pn-v----------------~-~~~ea~~sn~~~l~~al~~~----~~ 251 (462)
. ..++.|+||+++|+..- .|- . + +.+.+-.|+ ..|++.+.++ ++
T Consensus 137 ~g~~~~~~~~~~~~~~~~P~GVv~~I~PwN-~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta-~~l~~l~~~aGlP~gv 214 (503)
T 1a4s_A 137 SGQHIQLPGGAFAYTRREPLGVCAGILAWN-YPFMIAAWKCAPALACGNAVVFKPSPMTPVTG-VILAEIFHEAGVPVGL 214 (503)
T ss_dssp CEEEEECGGGCEEEEEEEECSEEEEECCSS-SHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH-HHHHHHHHHTTCCTTS
T ss_pred cCCcccCCCCceeEEEEecCceEEEECCCc-chHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHhCCCcCe
Confidence 0 12478999999997432 131 1 1 116677787 7788777776 99
Q ss_pred EEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCC
Q psy11677 252 HSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQ 328 (462)
Q Consensus 252 v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~ 328 (462)
+++|+. . .+.+.|-.+..||.|..+||....+.|.+.+. .+||+....|+|++||++|||+++|++.++++|..+.
T Consensus 215 v~vv~g~~-~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa~~~~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~~~n~ 293 (503)
T 1a4s_A 215 VNVVQGGA-ETGSLLCHHPNVAKVSFTGSVPTGKKVMEMSAKTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQ 293 (503)
T ss_dssp EEECCCSH-HHHHHHHHCTTCCEEEEESCHHHHHHHHHHHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHTTCGGG
T ss_pred EEEEecCc-hHHHHHHhCCCcCEEEEeCCHHHHHHHHHHhhhcCCceEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 999994 5 66666656677999999999998888877651 5999999999999999999999999999999999988
Q ss_pred CC
Q psy11677 329 GL 330 (462)
Q Consensus 329 ~~ 330 (462)
|-
T Consensus 294 GQ 295 (503)
T 1a4s_A 294 GQ 295 (503)
T ss_dssp GC
T ss_pred CC
Confidence 84
|
| >1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.1e-12 Score=134.72 Aligned_cols=191 Identities=10% Similarity=0.011 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhcc----c
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRK----I 197 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~----i 197 (462)
+......||.|.+.... +++.|.++.++|.+++..|.-+ ++.+++.++ .
T Consensus 32 v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~~~a~~~~~~~~~ 111 (510)
T 1ez0_A 32 VNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVRLTGEIARTANQLRLFADVVNSGSYH 111 (510)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 55556667766554332 9999999999999988776521 444444443 0
Q ss_pred ccccc-----ccCC-----CCCCCCceeeEEEEeC-CCCcccc-c--c-----------------cccccchHHHHHhh-
Q psy11677 198 GTFFT-----DASA-----QSGGTPVEVLAEIWKN-ETLNTTV-P--K-----------------KHAKTSQCKYFTKM- 245 (462)
Q Consensus 198 ~t~~a-----~~~d-----~~~~~PlGVi~~IyEs-r~~Pnv~-~--~-----------------~ea~~sn~~~l~~a- 245 (462)
+..+. ..+. ..++.|+||+++|++. . |-.+ . . +.+-.|+ ..|++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~--P~~~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~ 188 (510)
T 1ez0_A 112 QAILDTPNPTRAPLPKPDIRRQQIALGPVAVFGASNF--PLAFSAAGGDTASALAAGCPVIVKGHTAHPGTS-QIVAECI 188 (510)
T ss_dssp CEEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSC--TTTTSTTSHHHHHHHHHTCCEEEECCTTCHHHH-HHHHHHH
T ss_pred cccccccccccCCCCCCCceEEEecCcEEEEECCccc--hhhhhhhHHHHHHHHHcCCEEEEECCCCchHHH-HHHHHHH
Confidence 11110 0010 1247899999999877 5 8543 1 1 5666777 777744
Q ss_pred ---cCCC----CeEEeecC--HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC-C---cceeeeccceeEEEEccCCC
Q psy11677 246 ---LPRY----PLHSQVST--REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ-H---IPVLGHAEGICHVYVDKDAD 312 (462)
Q Consensus 246 ---l~~~----~~v~~v~~--r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~-~---iPvi~~~~G~ch~yvd~~ad 312 (462)
|.++ +++++|+. ++....|++ +.+||.|..+||....+.|.+.+. + +||.....|+|++||++|||
T Consensus 189 ~~al~~aGlP~gvv~vv~g~~~~~g~~L~~-~p~v~~I~FTGS~~~G~~i~~~aa~~l~~~pv~lELGGk~p~iV~~dAD 267 (510)
T 1ez0_A 189 EQALKQEQLPQAIFTLLQGNQRALGQALVS-HPEIKAVGFTGSVGGGRALFNLAHERPEPIPFYGELGAINPTFIFPSAM 267 (510)
T ss_dssp HHHHHHHTCCGGGEEEECCSCTHHHHHHHH-CTTCCEEEEESCHHHHHHHHHHHHHSSSCCCEEEECCCCCEEEECHHHH
T ss_pred HHHHHHhCCCCCeEEEEeCCcHHHHHHHHc-CCCCCEEEEeCcHHHHHHHHHHhhccCCCccEEEECCCCCeEEEeCCCC
Confidence 3443 89999983 565566666 567999999999999999988763 1 89999999999999999999
Q ss_pred HH--HHHHHHHcccCCCCCCCCchhHHHHHHhhhccc
Q psy11677 313 IR--KAIKIARSGSRVLQGLNPEDRAKAIYNLADQGE 347 (462)
Q Consensus 313 ~~--~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~ 347 (462)
++ +|++.++++|+.+.|= .|.+...+..|+.
T Consensus 268 l~~~~aa~~i~~~~~~n~GQ----~C~a~~rvlV~~~ 300 (510)
T 1ez0_A 268 RAKADLADQFVASMTMGCGQ----FCTKPGVVFALNT 300 (510)
T ss_dssp HHCTTHHHHHHHHHTGGGGC----CTTCCCEEEEESS
T ss_pred ccHHHHHHHHHHHHHcCCCC----CcCCCCEEEEeCC
Confidence 99 9999999999998874 3444444444443
|
| >1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-12 Score=136.09 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=119.4
Q ss_pred HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcccccccccc--C-C-----CCCCCCceeeEEEEe
Q psy11677 166 SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTDA--S-A-----QSGGTPVEVLAEIWK 221 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~~--~-d-----~~~~~PlGVi~~IyE 221 (462)
+++.|.++.++|......|.-+ ++.+++.++ ++..- + + ..++.|+||+++|++
T Consensus 91 ~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~~~~---~~~g~~~~~~~~~~~~~~~~P~GVv~~I~P 167 (500)
T 1o04_A 91 LADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWAD---KYHGKTIPIDGDFFSYTRHEPVGVCGQIIP 167 (500)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTT---TCCEEEECCSSSEEEEEEEEECCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH---HhhCcceecCCCceEEEEEecCCcEEEECC
Confidence 8899999999998877665422 444554444 32210 1 1 134789999999997
Q ss_pred CCCCcc-c----------------c-cccccccchHHHHHhhcCCC----CeEEeec--CHHHHHHHhcCCCCccEEeec
Q psy11677 222 NETLNT-T----------------V-PKKHAKTSQCKYFTKMLPRY----PLHSQVS--TREEISDLLSMEKHIDLIIPR 277 (462)
Q Consensus 222 sr~~Pn-v----------------~-~~~ea~~sn~~~l~~al~~~----~~v~~v~--~r~~~~~ll~~~~~iDliIPr 277 (462)
.. .|- . + +.+.+-.|+ ..|++.+.++ +++++|+ +++....|++ +..||.|..+
T Consensus 168 wN-~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~aGlP~gvv~vv~g~~~~~g~~L~~-~p~v~~I~FT 244 (500)
T 1o04_A 168 WN-FPLLMQAWKLGPALATGNVVVMKVAEQTPLTA-LYVANLIKEAGFPPGVVNIVPGFGPTAGAAIAS-HEDVDKVAFT 244 (500)
T ss_dssp SS-SHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH-HHHHHHHHHHTCCTTSEEECCBCTTTHHHHHHT-CTTCCEEEEE
T ss_pred CC-chHHHHHHHHHHHHHcCCEEEEECCccChHHH-HHHHHHHHHhCCCcCeEEEEecCcHHHHHHHHh-CCCcCEEEEE
Confidence 65 462 1 1 116777788 7788777665 8999998 3554555555 6679999999
Q ss_pred CChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 278 GSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 278 G~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
||...-+.|.+.+ +.+||.....|+|++||++|||+++|++.++++|..+.|-
T Consensus 245 GS~~~G~~i~~~aa~~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ 300 (500)
T 1o04_A 245 GSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQ 300 (500)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGC
T ss_pred CCHHHHHHHHHhhhhhcCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhccCCC
Confidence 9999999888654 2599999999999999999999999999999999998874
|
| >3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-12 Score=135.69 Aligned_cols=176 Identities=18% Similarity=0.179 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhccccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRKIGTFF 201 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~i~t~~ 201 (462)
+......|+.|...... +++.|.++.++|.++...|.-+ ++..+..++ .+
T Consensus 36 v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~~~---~~ 112 (486)
T 3pqa_A 36 AKEAIDTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPIKQARVEVERSIGTFKLAAFYVK---EH 112 (486)
T ss_dssp HHHHHHHHHHTHHHHHTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH---Hh
Confidence 55555666666543222 8888988888888776655422 222222222 11
Q ss_pred cc--cCC-----CCCCCCceeeEEE--EeCCCCccccc-----------------ccccccchHHHHH----hhcCCC--
Q psy11677 202 TD--ASA-----QSGGTPVEVLAEI--WKNETLNTTVP-----------------KKHAKTSQCKYFT----KMLPRY-- 249 (462)
Q Consensus 202 a~--~~d-----~~~~~PlGVi~~I--yEsr~~Pnv~~-----------------~~ea~~sn~~~l~----~al~~~-- 249 (462)
.. .+. ...+.|+||+++| |... ...+. .+.+-.|+ ..|+ ++|+++
T Consensus 113 ~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P--~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~al~~~Gl 189 (486)
T 3pqa_A 113 RDEVIPSDDRLIFTRREPVGIVGAITPFNFP--LNLSAHKIAPAIATGNVIVHHPSSKAPLVC-IELAKIIENALKKYNV 189 (486)
T ss_dssp CEEEECCTTEEEEEEEEECSEEEEEECSSSH--HHHHHHHHHHHHHTTCEEEEEECTTSCHHH-HHHHHHHHHHHHHTTC
T ss_pred cCceecCCCceeEEEEccccEEEEECCCchH--HHHHHHHHHHHHHcCCEEEEECCCCchHHH-HHHHHHHHHHHHhcCC
Confidence 10 111 1358999999999 4332 22211 16777787 7777 665555
Q ss_pred --CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 250 --PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 250 --~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
+++++|+ +.+.+.+.|-.+..||.|..+||....+.|.+.+..+||.....|+|++||++|||+++|++.++.+|+.
T Consensus 190 P~gvv~vv~g~~~~~g~~L~~~p~vd~V~fTGS~~~g~~i~~~aa~~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~ 269 (486)
T 3pqa_A 190 PLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKKAGFKKIALELGGVNPNIVLKDADLNKAVNALIKGSFI 269 (486)
T ss_dssp CGGGEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHCCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHG
T ss_pred CCCeEEEEeCCchHHHHHHHhCCCccEEEEECChHHHHHHHHHcCCCceeeccCCcCcEEEcCCCCHHHHHHHHHHHHHh
Confidence 8999999 4556555554567799999999999999999987459999999999999999999999999999999999
Q ss_pred CCCC
Q psy11677 327 LQGL 330 (462)
Q Consensus 327 ~~~~ 330 (462)
+.|-
T Consensus 270 n~GQ 273 (486)
T 3pqa_A 270 YAGQ 273 (486)
T ss_dssp GGGC
T ss_pred cCCC
Confidence 8885
|
| >1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-11 Score=130.62 Aligned_cols=176 Identities=12% Similarity=0.121 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccC---
Q psy11677 149 VEVLAENVNLKMEIL------------VNSATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDAS--- 205 (462)
Q Consensus 149 ~~~ia~~AK~As~~L------------~~iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~--- 205 (462)
+......|+.|.+.. ..+++.|.++.++|.++...|.-+ +..+++.++ ..+.+.
T Consensus 45 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~---~~a~~~~~~ 121 (486)
T 1t90_A 45 IDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVE---FAAGAPSLM 121 (486)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 455555666665432 118999999999998888776532 344444444 222111
Q ss_pred ----------C---CCCCCCceeeEEEEeCCCCccc-----------------c-cccccccchHHHHHhhcCCC----C
Q psy11677 206 ----------A---QSGGTPVEVLAEIWKNETLNTT-----------------V-PKKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 206 ----------d---~~~~~PlGVi~~IyEsr~~Pnv-----------------~-~~~ea~~sn~~~l~~al~~~----~ 250 (462)
. ..++.|+||+++|+... .|-. + +.+.+-.|+ ..|++.+.++ +
T Consensus 122 ~g~~~~~~~~~~~~~~~~~P~GVV~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~aGlP~g 199 (486)
T 1t90_A 122 MGDSLASIATDVEAANYRYPIGVVGGIAPFN-FPMMVPCWMFPMAIALGNTFILKPSERTPLLT-EKLVELFEKAGLPKG 199 (486)
T ss_dssp CEEEEEEEETTEEEEEEEEECSEEEEECCSS-CTTHHHHHHHHHHHHTTCEEEEECCSSSCHHH-HHHHHHHHHTTCCTT
T ss_pred cCcccccCCCCceeEEEecccCEEEEECCCc-hhHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHhCCCCC
Confidence 1 12478999999998765 4621 1 116777788 7888777766 8
Q ss_pred eEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 251 LHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 251 ~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
++++|+ +++....|++ +..||.|..+||....+.|.+.+ +.+||+....|+|++||++|||+++|++.++++|..+
T Consensus 200 vv~vv~g~~~~~~~L~~-~~~v~~I~fTGS~~~g~~i~~~aa~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n 278 (486)
T 1t90_A 200 VFNVVYGAHDVVNGILE-HPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGS 278 (486)
T ss_dssp SEEECCCSHHHHHHHHH-CTTEEEEEEESCHHHHHHHHHHHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGG
T ss_pred EEEEEECCHHHHHHHHh-CCCCCEEEEeCCHHHHHHHHHHHhccCCcEEeccCCCCcEEECCCCCHHHHHHHHHHHHHhC
Confidence 999999 5766666776 56799999999999999998765 1499999999999999999999999999999999998
Q ss_pred CCC
Q psy11677 328 QGL 330 (462)
Q Consensus 328 ~~~ 330 (462)
.|-
T Consensus 279 ~GQ 281 (486)
T 1t90_A 279 AGE 281 (486)
T ss_dssp GGC
T ss_pred CCC
Confidence 885
|
| >1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-11 Score=128.65 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcc---------ccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRK---------IGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~---------i~t 199 (462)
+......||.|.+.+.. +++.|.++.++|.++...|.-+ +..+++.++ .|.
T Consensus 42 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~~~~~~ 121 (475)
T 1euh_A 42 VDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGE 121 (475)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55556667766654333 8899999999988877666532 222222222 111
Q ss_pred ccc-ccCC--------CCCCCCceeeEEEEeCCCCc-ccc-----------------cccccccchHHHHHhhcCCC---
Q psy11677 200 FFT-DASA--------QSGGTPVEVLAEIWKNETLN-TTV-----------------PKKHAKTSQCKYFTKMLPRY--- 249 (462)
Q Consensus 200 ~~a-~~~d--------~~~~~PlGVi~~IyEsr~~P-nv~-----------------~~~ea~~sn~~~l~~al~~~--- 249 (462)
.+. ..+. ..++.|+||+++|+..- .| ... +.+.+-.|+ ..|++.+.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~-~~l~~ll~~aGlP 199 (475)
T 1euh_A 122 VLEGGSFEAASKKKIAVVRREPVGLVLAISPFN-YPVNLAGSKIAPALIAGNVIAFKPPTQGSISG-LLLAEAFAEAGLP 199 (475)
T ss_dssp EEEGGGTCGGGTTEEEEEEEEECSEEEEECCTT-STTHHHHHHHHHHHHTTCEEEEECCSTTHHHH-HHHHHHHHHHTCC
T ss_pred cccCCCCCccccceeeEEEEeccceEEEECCCC-chHHHHHHHHHHHHHcCCEEEEeCCCcChHHH-HHHHHHHHHhCCC
Confidence 111 0111 22467999999997433 24 211 116677777 7777666665
Q ss_pred -CeEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 250 -PLHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 250 -~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
+++++|+. .+.+.+.|-.+..||.|..+||....+.|.+.+..+||+....|++++||++|||+++|++.++++|..+
T Consensus 200 ~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n 279 (475)
T 1euh_A 200 AGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGY 279 (475)
T ss_dssp TTTEEECCCCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHTTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGG
T ss_pred cCeEEEEeCCcHHHHHHHHhCCCcCEEEEECchHHHHHHHHhcCCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhc
Confidence 99999994 5556665555667999999999999999999873499999999999999999999999999999999998
Q ss_pred CCC
Q psy11677 328 QGL 330 (462)
Q Consensus 328 ~~~ 330 (462)
.|-
T Consensus 280 ~GQ 282 (475)
T 1euh_A 280 SGQ 282 (475)
T ss_dssp GGC
T ss_pred CCC
Confidence 885
|
| >3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.4e-12 Score=133.56 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=118.9
Q ss_pred HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccccccc----cCC----CCCCCCceeeEEEEe
Q psy11677 166 SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTD----ASA----QSGGTPVEVLAEIWK 221 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~----~~d----~~~~~PlGVi~~IyE 221 (462)
+++.|.++.++|.++...|.-+ ++.++..++ .+.. .+. ..++.|+||+++|++
T Consensus 79 ~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~~~~---~~~g~~~~~~~~~~~~~~~~P~GVv~~I~P 155 (495)
T 3b4w_A 79 AVKMLAERKDLFTKLLAAETGQPPTIIETMHWMGSMGAMNYFAGAAD---KVTWTETRTGSYGQSIVSREPVGVVGAIVA 155 (495)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCCCHHHHHHTTTHHHHHHHHHHHTCGG---GSCSEEEEEETTEEEEEEEEECCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCcccCCCCceEEEEEccCceEEEECC
Confidence 8888888888888777665432 333343333 2211 111 134789999999986
Q ss_pred CCCCcc-c----------------c-cccccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhcCCCCccEEeecC
Q psy11677 222 NETLNT-T----------------V-PKKHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLSMEKHIDLIIPRG 278 (462)
Q Consensus 222 sr~~Pn-v----------------~-~~~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~~~~~iDliIPrG 278 (462)
.- .|- . + +.+.+-.|+ ..|++.+.++ +++++|+ +++....|++ +..||.|..+|
T Consensus 156 wN-~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~~eaGlP~gvv~vv~g~~~~g~~L~~-~~~v~~I~FTG 232 (495)
T 3b4w_A 156 WN-VPLFLAVNKIAPALLAGCTIVLKPAAETPLTA-NALAEVFAEVGLPEGVLSVVPGGIETGQALTS-NPDIDMFTFTG 232 (495)
T ss_dssp SS-SHHHHHHHHHHHHHHTTCEEEEECBTTSCHHH-HHHHHHHHHTTCCTTSEEECCBSHHHHHHHTT-CTTCCEEEEES
T ss_pred Cc-chHHHHHHHHHHHHHcCCEEEEecCCccHHHH-HHHHHHHHHhCCCcCeEEEEeCCHHHHHHHHh-CCCcCEEEEeC
Confidence 43 242 1 1 116777788 7788777666 9999999 5666666775 56799999999
Q ss_pred ChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 279 SSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 279 ~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
|....+.|.+.+. .+||+....|+|++||++|||+++|++.++++|+.+.|-
T Consensus 233 S~~~G~~i~~~aa~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ 286 (495)
T 3b4w_A 233 SSAVGREVGRRAAEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQ 286 (495)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGC
T ss_pred CHHHHHHHHHHhhhcCCceeecCCCcceEEECCCCCHHHHHHHHHHHHhhcCCC
Confidence 9999998887662 499999999999999999999999999999999998875
|
| >1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-11 Score=130.74 Aligned_cols=177 Identities=13% Similarity=0.018 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHH-HHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc---
Q psy11677 149 VEVLAENVNLKME-ILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA--- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~-~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~--- 204 (462)
+......|+.|.+ .... +++.|.++.++|..+...|.-+ +..+++.++ ..+..
T Consensus 56 v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~---~~a~~~~~ 132 (501)
T 1uxt_A 56 VERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDRLR---LAELDLKK 132 (501)
T ss_dssp HHHHHHHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---TGGGGGGG
T ss_pred HHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 5555566666655 3222 8999999999998877766532 444444443 21111
Q ss_pred -----------CC------CCCCCCceeeEEEEeCCCCc-ccc-----------------cccccccchHHHHHhhcCCC
Q psy11677 205 -----------SA------QSGGTPVEVLAEIWKNETLN-TTV-----------------PKKHAKTSQCKYFTKMLPRY 249 (462)
Q Consensus 205 -----------~d------~~~~~PlGVi~~IyEsr~~P-nv~-----------------~~~ea~~sn~~~l~~al~~~ 249 (462)
+. ..++.|+||+++|+..- .| +.+ +.+.+-.|+ ..|++.+.++
T Consensus 133 ~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~~ea 210 (501)
T 1uxt_A 133 IGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFN-YPLFDAVNKITYSFIYGNAVVVKPSISDPLPA-AMAVKALLDA 210 (501)
T ss_dssp TCCEEEESTTSSTTTTEEEEEEEEECSEEEEECCTT-STTHHHHHHHHHHHHTTCEEEEECCTTSCHHH-HHHHHHHHHT
T ss_pred hcCccccccccCCCcCceEEEEEeeccEEEEECCCc-cHHHHHHHHHHHHHHcCCEEEEeCCCCchHHH-HHHHHHHHHh
Confidence 11 12368999999997433 24 211 116777787 7777777666
Q ss_pred ----CeEEeecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 250 ----PLHSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 250 ----~~v~~v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
+++++|+....+.+.|-.+..||.|..+||....+.|.+.+..+||+....|+|++||++|||+++|++.++++|+
T Consensus 211 GlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~G~~i~~~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~ 290 (501)
T 1uxt_A 211 GFPPDAIALLNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKVGGVKQYVMELGGGDPAIVLEDADLDLAADKIARGIY 290 (501)
T ss_dssp TCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHHHCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcCeEEEEeCCcHHHHHHHhCCCcCEEEEeCcHHHHHHHHHhcCCCeEEEEcCCcCeEEECCCCCHHHHHHHHHHHHh
Confidence 9999999422677766667789999999999999999998634999999999999999999999999999999999
Q ss_pred CCCCC
Q psy11677 326 VLQGL 330 (462)
Q Consensus 326 ~~~~~ 330 (462)
.+.|-
T Consensus 291 ~n~GQ 295 (501)
T 1uxt_A 291 SYAGQ 295 (501)
T ss_dssp GGGGC
T ss_pred cCCCC
Confidence 98884
|
| >4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-11 Score=129.62 Aligned_cols=177 Identities=15% Similarity=0.100 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccCC--
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDASA-- 206 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~d-- 206 (462)
+......|+.|.+.+.. +++.|+++.++|......|.-. +..+++.++ ..+...+
T Consensus 46 v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~---~~a~~~~~~ 122 (485)
T 4dng_A 46 LEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKSTIELEQTIAILD---EAMTYTGEL 122 (485)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55556666766554222 8888988888888776554421 334444443 2222110
Q ss_pred ---------------CCCCCCceeeEEE--EeCCCCcccccc--------------cccccchH---HHHHhhcCCC---
Q psy11677 207 ---------------QSGGTPVEVLAEI--WKNETLNTTVPK--------------KHAKTSQC---KYFTKMLPRY--- 249 (462)
Q Consensus 207 ---------------~~~~~PlGVi~~I--yEsr~~Pnv~~~--------------~ea~~sn~---~~l~~al~~~--- 249 (462)
...+.|+||+++| |... ++.+.. |-+..+.. ..|.+.+.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P--~~~~~~~~~~ALaaGN~VVlKps~~tp~~~~~~l~~~l~~aGlP 200 (485)
T 4dng_A 123 GGVKEVPSDIEGKTNKIYRLPLGVISSISPFNFP--MNLSMRSIAPAIALGNSVVHKPDIQTAISGGTIIAKAFEHAGLP 200 (485)
T ss_dssp SCEECCCCSSTTEEEEEEEEECCEEEEECCSSSH--HHHHHHHHHHHHHTTCEEEEECCGGGHHHHTHHHHHHHHHTTCC
T ss_pred CCeeccccCCCCceEEEEEecceEEEEECCCccH--HHHHHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHHhCcC
Confidence 1247899999999 6554 443222 33333331 2233777776
Q ss_pred -CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccC
Q psy11677 250 -PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSR 325 (462)
Q Consensus 250 -~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~ 325 (462)
+++++|+ +.+.+.+.|-.+..||.|..+||....+.|.+.+. .+||.....|+|++||++|||+++|++.++++|.
T Consensus 201 ~gvv~vv~g~~~~~~~~L~~~p~v~~v~fTGS~~~g~~i~~~aa~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~ 280 (485)
T 4dng_A 201 AGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIAGRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKF 280 (485)
T ss_dssp TTSEEECCCCHHHHTTHHHHCSSCSEEEEEECHHHHHHHHHHHHHHTCEEEEEECCCEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCChhHHHHHHhCCCCCEEEEECCcHHHHHHHHHHhhhccchhhhcCCCCceEEcCCCCHHHHHHHHHHHHH
Confidence 8999999 45555555545667999999999999998887651 3899988899999999999999999999999999
Q ss_pred CCCCC
Q psy11677 326 VLQGL 330 (462)
Q Consensus 326 ~~~~~ 330 (462)
.+.|-
T Consensus 281 ~~~GQ 285 (485)
T 4dng_A 281 IHQGQ 285 (485)
T ss_dssp TCC--
T ss_pred hcCCC
Confidence 98775
|
| >3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-11 Score=131.32 Aligned_cols=177 Identities=13% Similarity=0.086 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccC---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDAS--- 205 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~--- 205 (462)
+......|+.|.+.+.. +++.|+++.++|......|.-+ +...++.++ ..+.+.
T Consensus 72 v~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~---~~a~~~~~~ 148 (504)
T 3ek1_A 72 IKEAIDASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPLAEARGEVLYAASFIE---WFAEEAKRV 148 (504)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55556667766654333 8899999999888877665432 333333333 222211
Q ss_pred --------C-----CCCCCCceeeEEEEeCCCCc-cc----------------c-cccccccchHHHHHhhcCCC----C
Q psy11677 206 --------A-----QSGGTPVEVLAEIWKNETLN-TT----------------V-PKKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 206 --------d-----~~~~~PlGVi~~IyEsr~~P-nv----------------~-~~~ea~~sn~~~l~~al~~~----~ 250 (462)
. ..++.|+||+++|-..- .| .. + +.+.+-.|+ ..|++.+.++ +
T Consensus 149 ~g~~~~~~~~~~~~~~~~~P~GVV~~I~PwN-~P~~~~~~~~a~ALaaGN~VVlKPs~~tp~t~-~~l~~l~~eaGlP~g 226 (504)
T 3ek1_A 149 YGDTIPAPQNGQRLTVIRQPVGVTAAITPWN-FPAAMITRKAAPALAAGCTMIVRPADLTPLTA-LALGVLAEKAGIPAG 226 (504)
T ss_dssp CEEEECCSSTTEEEEEEEEECCEEEEECCSS-STTHHHHHHHHHHHHHTCEEEEECCTTSCHHH-HHHHHHHHHTTCCTT
T ss_pred cCcccccccccccceeeccCceEEEEECCCc-chHHHHHHHHHHHHHcCCEEEEECCCcChHHH-HHHHHHHHHhCCCcc
Confidence 1 12488999999994211 13 21 1 116667777 7777777776 8
Q ss_pred eEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 251 LHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 251 ~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
++++|+ +...+.+.|-.+..||.|..+||....+.|.+.+. -.||.....|+|++||++|||+++|++.++.+|..+
T Consensus 227 v~~vv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n 306 (504)
T 3ek1_A 227 VLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQCAPTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRN 306 (504)
T ss_dssp TEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHHGGGTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGG
T ss_pred cEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhhhhhcCCeEecCCCCCeeEEcCCCCHHHHHHHHHHHHHhc
Confidence 999998 44445444444566999999999999999988762 389999999999999999999999999999999998
Q ss_pred CCC
Q psy11677 328 QGL 330 (462)
Q Consensus 328 ~~~ 330 (462)
.|-
T Consensus 307 ~GQ 309 (504)
T 3ek1_A 307 AGQ 309 (504)
T ss_dssp GGC
T ss_pred CCC
Confidence 886
|
| >3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-11 Score=133.06 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=115.1
Q ss_pred HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhcccccccccc--C---C----CCCCCCceeeEEEEe
Q psy11677 166 SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRKIGTFFTDA--S---A----QSGGTPVEVLAEIWK 221 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~i~t~~a~~--~---d----~~~~~PlGVi~~IyE 221 (462)
+++.|+++.++|..++..|.-+ ++.++..++ .+... + . ..++.|+||+++|+.
T Consensus 94 ~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~P 170 (528)
T 3u4j_A 94 VADLILARQEELALIESLEVGKPIAQARGEIGFCADLWSYAAGQAR---ALEGQTHNNIGDDRLGLVLREPVGVVGIITP 170 (528)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHT---TCCEEEECCSCTTEEEEEEEEECCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH---HhcCeeeccCCCCceeEEEeccceEEEEECC
Confidence 8999999999998887776522 444554444 33221 1 1 135899999999973
Q ss_pred CCCCcc----------------cc--cccccccchHHHHHhhcCCC----CeEEeecC--HHHHHHHhcCCCCccEEeec
Q psy11677 222 NETLNT----------------TV--PKKHAKTSQCKYFTKMLPRY----PLHSQVST--REEISDLLSMEKHIDLIIPR 277 (462)
Q Consensus 222 sr~~Pn----------------v~--~~~ea~~sn~~~l~~al~~~----~~v~~v~~--r~~~~~ll~~~~~iDliIPr 277 (462)
.- .|- |+ +.+++-.|+ ..|++.+.++ +++++|+. ++....|++ +..||.|..+
T Consensus 171 wN-~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~-~~l~~l~~eaGlP~gvv~vv~g~~~~~g~~L~~-~p~vd~I~FT 247 (528)
T 3u4j_A 171 WN-FPFIIASERVPWAIGSGCTVVLKPSEFTSGTS-IRLAELAREAGIPDGVFNVVTGYGDPAGQVLAE-DPNVDMVAFT 247 (528)
T ss_dssp SS-SHHHHHHHHHHHHHHTTCEEEEECCTTCCHHH-HHHHHHHHHHTCCTTSEEECCCSSTTHHHHHHH-CTTCCEEEEE
T ss_pred Cc-cHHHHHHHHHHHHHHcCCeEEEEcCCccHHHH-HHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHh-CCCcCEEEEe
Confidence 22 131 11 117777888 8888766665 89999983 455556665 5669999999
Q ss_pred CChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 278 GSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 278 G~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
||...-+.|.+.+. .+||.....|+|++||++|||+++|++.++.+|+.+.|-
T Consensus 248 GS~~~G~~i~~~aa~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ 302 (528)
T 3u4j_A 248 GSVRVGTKLGEIAARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQ 302 (528)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGC
T ss_pred CCHHHHHHHHHHHHhcCCceEEecCCCCeeEECCCCCHHHHHHHHHHHHhhcCCC
Confidence 98776666554431 478888888999999999999999999999999998885
|
| >3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.7e-11 Score=124.90 Aligned_cols=172 Identities=17% Similarity=0.191 Sum_probs=122.3
Q ss_pred HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhccccccccc----------cCC--CCCCCCceeeE
Q psy11677 166 SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTFFTD----------ASA--QSGGTPVEVLA 217 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~~a~----------~~d--~~~~~PlGVi~ 217 (462)
+++.|+++.++|.++...|.-+ ++.+++.++ .++. .+. ...+.|+||++
T Consensus 49 ~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~ 125 (469)
T 3sza_A 49 LQRLIQEQEQELVGALAADLHKNEWNAYYEEVVYVLEEIEYMIQKLP---EWAADEPVEKTPQTQQDELYIHSEPLGVVL 125 (469)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCCCHHHHHHTTHHHHHHHHHHHHHHHH---HHHSCEECCCCGGGTTSEEEEEEEECSEEE
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH---hhhcccccCccccCCCccceeeccCCCEEE
Confidence 8889999999988887766422 333333332 2211 000 12489999999
Q ss_pred EEEeCCCCcc-c----------------c-cccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhcCCCCccEEe
Q psy11677 218 EIWKNETLNT-T----------------V-PKKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLSMEKHIDLII 275 (462)
Q Consensus 218 ~IyEsr~~Pn-v----------------~-~~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~~~~~iDliI 275 (462)
+|...- .|- . + +.+.+-.|+ ..|++.+.++ +++++|+ +.+.+.+|+.. .||.|.
T Consensus 126 ~I~PwN-~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~-~~l~~l~~~alP~gvv~vv~g~~~~~~~ll~~--~vd~I~ 201 (469)
T 3sza_A 126 VIGTWN-YPFNLTIQPMVGAIAAGNAVVLKPSELSENMA-SLLATIIPQYLDKDLYPVINGGVPETTELLKE--RFDHIL 201 (469)
T ss_dssp EECCSS-STTHHHHHHHHHHHHTTCEEEEECCTTSHHHH-HHHHHHHHHHSCTTTSCBCCCSHHHHHHHTTS--CCSEEE
T ss_pred EECCCc-chHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHhCCcceEEEEECCHHHHHHHHhc--CCCEEE
Confidence 997422 142 1 1 116667777 7777444443 8999998 68888999975 699999
Q ss_pred ecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 276 PRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 276 PrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
.+||...-+.|.+.+. .+||.....|+|++||++|||+++|++.++.+|..+.|- .|.+...+..|+.|
T Consensus 202 FTGS~~vG~~i~~~aa~~lkpv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ----~C~a~~rvlV~~~i 272 (469)
T 3sza_A 202 YTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMNSGQ----TCVAPDYILCDPSI 272 (469)
T ss_dssp EESCHHHHHHHHHHHHTTTCCEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGC----CTTSCCEEEECGGG
T ss_pred EECCHHHHHHHHHHHhhccCceEEecCCCCceEECCCCCHHHHHHHHHHHHHhcCCC----CCCCCcEEEEehhH
Confidence 9999999888877542 489999999999999999999999999999999998875 24444444444443
|
| >3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-11 Score=127.06 Aligned_cols=176 Identities=15% Similarity=0.099 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccC---
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDAS--- 205 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~--- 205 (462)
+......|++|.+.+.. +++.|+++.++|......|.-+ +...++.++ ..+...
T Consensus 52 v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~---~~a~~~~~~ 128 (484)
T 3ifg_A 52 TARAIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPLAEAKGEIAYAASFIE---WFAEEGKRV 128 (484)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HHHHHHHhh
Confidence 55555666666654322 8889999998888777665422 333333333 222211
Q ss_pred ----------C---CCCCCCceeeEEE--EeCCCCcccc-----------------cccccccchHHHHHhhcCCC----
Q psy11677 206 ----------A---QSGGTPVEVLAEI--WKNETLNTTV-----------------PKKHAKTSQCKYFTKMLPRY---- 249 (462)
Q Consensus 206 ----------d---~~~~~PlGVi~~I--yEsr~~Pnv~-----------------~~~ea~~sn~~~l~~al~~~---- 249 (462)
. ..++.|+||+++| |... .... +.+.+-.|+ ..|++.+.++
T Consensus 129 ~g~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P--~~~~~~~~a~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~aGlP~ 205 (484)
T 3ifg_A 129 AGDTLPTPDANKRIVVVKEPIGVCAAITPWNFP--AAMIARKVGPALAAGCPIVVKPAESTPFSA-LAMAFLAERAGVPK 205 (484)
T ss_dssp CEEEECCSSTTEEEEEEEEECSSEEEECCSSST--THHHHHHHHHHHHHTCCEEEECCTTSCHHH-HHHHHHHHHHTCCT
T ss_pred cCccccccCCCceeEEEecCCcEEEEECCCcCh--HHHHHHHHHHHHHcCCEEEEECCCCCcHHH-HHHHHHHHHhCCCc
Confidence 0 1248899999999 4332 2211 116667777 7777776665
Q ss_pred CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 250 PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 250 ~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
+++++|+ +...+.+.|-.+..||.|..+||...-+.|.+.+. .+||.....|++++||++|||+++|++.++.+|..
T Consensus 206 gv~~vv~g~~~~~g~~L~~~p~v~~v~FTGS~~~G~~i~~~aa~~~k~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~ 285 (484)
T 3ifg_A 206 GVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQSAPTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYR 285 (484)
T ss_dssp TSEEECCBCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHTGGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHG
T ss_pred ccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHHhhccCCceEEecCCCCeEEECCCCCHHHHHHHHHHHHHh
Confidence 8999998 34455554545666999999999999999988762 38999888899999999999999999999999999
Q ss_pred CCCC
Q psy11677 327 LQGL 330 (462)
Q Consensus 327 ~~~~ 330 (462)
+.|-
T Consensus 286 n~GQ 289 (484)
T 3ifg_A 286 NNGQ 289 (484)
T ss_dssp GGGC
T ss_pred cCCC
Confidence 8885
|
| >3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-11 Score=129.27 Aligned_cols=177 Identities=18% Similarity=0.139 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---- 204 (462)
+......|+.|...... +++.|+++.++|.++...|.-+ +...++.++ ..+..
T Consensus 76 v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~---~~a~~~~~~ 152 (538)
T 3qan_A 76 AEKAIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPWKEADADTAEAIDFLE---YYARQMIEL 152 (538)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55556666766553222 8889999988888776655421 222223222 21111
Q ss_pred ------C---C---CCCCCCceeeEEEEeCCCCcc-c---------------c--cccccccchHHHHHhhcCCC----C
Q psy11677 205 ------S---A---QSGGTPVEVLAEIWKNETLNT-T---------------V--PKKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 205 ------~---d---~~~~~PlGVi~~IyEsr~~Pn-v---------------~--~~~ea~~sn~~~l~~al~~~----~ 250 (462)
+ . ..++.|+||+++|.... .|- . + +.+.+-.|+ ..|++.+.++ +
T Consensus 153 ~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN-~P~~~~~~~~a~ALaaGN~VVlKps~~tp~ta-~~l~~l~~eaGlP~g 230 (538)
T 3qan_A 153 NRGKEILSRPGEQNRYFYTPMGVTVTISPWN-FALAIMVGTAVAPIVTGNTVVLKPASTTPVVA-AKFVEVLEDAGLPKG 230 (538)
T ss_dssp HTCBCCCCCTTEEEEEEEEECCEEEEECCST-TTTHHHHHHHHHHHHTTCEEEEECCTTSHHHH-HHHHHHHHHTTCCTT
T ss_pred cCCeeecccCCcceeeecCCCcEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCccHHHH-HHHHHHHHHhCCCCC
Confidence 1 0 13489999999996443 242 1 1 115666777 7777777776 8
Q ss_pred eEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--------CcceeeeccceeEEEEccCCCHHHHHHHHH
Q psy11677 251 LHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--------HIPVLGHAEGICHVYVDKDADIRKAIKIAR 321 (462)
Q Consensus 251 ~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--------~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~ 321 (462)
++++|+. ...+.+.|-.+..||.|..+||...-+.|.+.+. .+||+....|+|++||++|||+++|++.++
T Consensus 231 vv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~aa~~~~~~~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~ 310 (538)
T 3qan_A 231 VINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYERAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESIL 310 (538)
T ss_dssp SEEECCBCTTTTHHHHHHCTTEEEEEEESCHHHHHHHHHHHTSCCTTCCSCCEEEEECCCCCEEEECTTSCHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHHhhhccccccccccEEEecCCCCceEECCCCCHHHHHHHHH
Confidence 9999993 4445554445677999999999999999988762 389999999999999999999999999999
Q ss_pred cccCCCCCC
Q psy11677 322 SGSRVLQGL 330 (462)
Q Consensus 322 nak~~~~~~ 330 (462)
.+|+.+.|-
T Consensus 311 ~~~f~n~GQ 319 (538)
T 3qan_A 311 VSAFGFSGQ 319 (538)
T ss_dssp HHHHGGGGC
T ss_pred HHHHhcCCC
Confidence 999998885
|
| >3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.9e-11 Score=134.83 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=116.6
Q ss_pred HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc-----------CCC------CCCCCceeeEEEE
Q psy11677 166 SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA-----------SAQ------SGGTPVEVLAEIW 220 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~-----------~d~------~~~~PlGVi~~Iy 220 (462)
+|+.|+++.++|......|.-+ +..+++.++ ..+.. +.+ ..+.|+||+++|.
T Consensus 581 ~ad~l~~~~~eLa~~~~~E~GK~~~ea~~Ev~~ai~~lr---~~a~~a~~~~g~~~~~~~~~g~~~~~~~~P~GVV~~I~ 657 (1001)
T 3haz_A 581 AAHLLESRSAHFIALLQREGGKTLDDALSELREAADFCR---YYAAQGRKLFGSETAMPGPTGESNALTMRGRGVFVAIS 657 (1001)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHSSCEECCCCTTEEEEEEEEECSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH---HHHHHHHhhcCccccccCCCCCceEEEEeCCcEEEEEc
Confidence 8899999999988877665432 444444444 33321 111 2468999999996
Q ss_pred eCCCCcc-c---------------c--cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEEeec
Q psy11677 221 KNETLNT-T---------------V--PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLIIPR 277 (462)
Q Consensus 221 Esr~~Pn-v---------------~--~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDliIPr 277 (462)
.-- .|- . + +.+.+-.|+ ..+++.+.++ +++|+|+. .+....|++ +..||.|+.+
T Consensus 658 PwN-fPl~i~~~~va~ALAAGNtVVlKPse~tp~ta-~~l~ell~eAGlP~gvv~vV~G~g~~g~~L~~-~p~Vd~V~FT 734 (1001)
T 3haz_A 658 PWN-FPLAIFLGQVTAALMAGNSVVAKPAEQTPRIA-REAVALLHEAGIPKSALYLVTGDGRIGAALTA-HPDIAGVVFT 734 (1001)
T ss_dssp CSS-STTHHHHHHHHHHHHTTCEEEEECCTTCHHHH-HHHHHHHHHHTCCTTTEEECCCCHHHHHHHHH-CTTCCEEEEE
T ss_pred CCC-ChHHHHHHHHHHHHHcCCEEEEecchhhHHHH-HHHHHHHHHhCcCcCcEEEEecCchHHHHHHh-CCCcCEEEec
Confidence 322 242 1 1 116667777 7777666655 99999994 334445554 5569999999
Q ss_pred CChhHHHHHHhhCC-----CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 278 GSSDLVRSIQQKSQ-----HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 278 G~~~lv~~v~~~s~-----~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
||....+.|.+.+. .+||+....|+|++||++|||+++|++.++.||.++.|-
T Consensus 735 GSt~vGr~I~~~aA~~~~~l~pv~lElGGknp~IV~~dADld~Aa~~iv~s~f~naGQ 792 (1001)
T 3haz_A 735 GSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATALPEQVADDVVTSAFRSAGQ 792 (1001)
T ss_dssp SCHHHHHHHHHHHHHSSSCCCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGC
T ss_pred CCHHHHHHHHHHHhcccCCCceEEeecCCcceEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999987632 489999999999999999999999999999999998885
|
| >2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-10 Score=123.13 Aligned_cols=119 Identities=16% Similarity=0.118 Sum_probs=91.2
Q ss_pred CCCceeeEEEEeCCCCcc-cc-----------------cccccccchHHHHH----hhcCCC----CeEEeecCHHHHHH
Q psy11677 210 GTPVEVLAEIWKNETLNT-TV-----------------PKKHAKTSQCKYFT----KMLPRY----PLHSQVSTREEISD 263 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pn-v~-----------------~~~ea~~sn~~~l~----~al~~~----~~v~~v~~r~~~~~ 263 (462)
+.|+||+++|+... .|- .+ +.+.+-.|+ ..|+ ++|.++ +++++|+....+.+
T Consensus 155 ~~P~GVv~~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~al~~aGlP~gvv~vv~g~~~~g~ 232 (500)
T 2j6l_A 155 WNPVGLVGIITAFN-FPVAVYGWNNAIAMICGNVCLWKGAPTTSLIS-VAVTKIIAKVLEDNKLPGAICSLTCGGADIGT 232 (500)
T ss_dssp EEECSEEEEECCSS-STTHHHHHHHHHHHHTTCEEEEECCGGGHHHH-HHHHHHHHHHHHHTTCCGGGEEEECCSHHHHH
T ss_pred EecccEEEEECCCc-chhhHHHHHHHHHHHhCCEEEEECCCccHHHH-HHHHHHHHHHHHhhcCCcCeEEEEeCCHHHHH
Confidence 78999999998654 352 11 116666777 6666 555555 89999996445556
Q ss_pred HhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 264 LLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 264 ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
.|-.+..||.|..+||....+.|.+.+. ..||.....|+|++||++|||+++|++.++++|..+.|-
T Consensus 233 ~L~~~~~vd~I~FTGS~~~g~~i~~~aa~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ 301 (500)
T 2j6l_A 233 AMAKDERVNLLSFTGSTQVGKQVGLMVQERFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQ 301 (500)
T ss_dssp HHHHCTTCSEEEEESCHHHHHHHHHHHHHTTCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGC
T ss_pred HHhcCCCcCEEEEECCHHHHHHHHHHhccCCCceEEEcCCCCceEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 5555677999999999999999887541 256655555999999999999999999999999998885
|
| >4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.6e-11 Score=134.35 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------HHHHHhhcccccccccc----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDA---- 204 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~---- 204 (462)
+......|+.|...... +|+.|.++.++|.++...|.-+ +...++.++ ..+..
T Consensus 570 v~~Av~aA~~A~~~W~~~~~~eRa~iL~~~Adll~~~~~eLa~~~~~E~GK~~~ea~~Ev~~aid~lr---~~a~~~~~~ 646 (1026)
T 4f9i_A 570 VGDAIAAAKAAFPAWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQWDQAYADVTEAIDFLE---YYAREMIRL 646 (1026)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHH---HHHHHHHHh
Confidence 55555666666554322 8899999998888776655321 333334333 22211
Q ss_pred ---------CC---CCCCCCceeeEEEEeCCCCccc----------------c--cccccccchHHHHHhhcCCC----C
Q psy11677 205 ---------SA---QSGGTPVEVLAEIWKNETLNTT----------------V--PKKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 205 ---------~d---~~~~~PlGVi~~IyEsr~~Pnv----------------~--~~~ea~~sn~~~l~~al~~~----~ 250 (462)
+. ...+.|+||+++|...- .|-. + +.+.+-.|+ ..+++.+.++ +
T Consensus 647 ~~~~~~~~~~g~~~~~~~~PlGVV~~I~PwN-fPl~i~~~~~a~ALaaGNtVVlKPse~tplsa-~~l~ell~eAGlP~g 724 (1026)
T 4f9i_A 647 GQPQRVGHAPGELNHYFYEPKGVAAVIAPWN-FPLAISMGMASAAIVTGNCVVFKPSGITSIIG-WHLVELFREAGLPEG 724 (1026)
T ss_dssp TSCEEECCCTTEEEEEEEEECSEEEEECCSS-STTHHHHHHHHHHHHTTCEEEEECCGGGHHHH-HHHHHHHHHTTCCTT
T ss_pred cCCccccCCCCccceeEeecCceEEEeCCCc-cHHHHHHHHHHHHHHcCCEEEEEcCccchHHH-HHHHHHHHHhCcCCC
Confidence 10 12478999999996433 2421 1 116677777 7777777776 8
Q ss_pred eEEeecC-HHHH-HHHhcCCCCccEEeecCChhHHHHHHhhCC--------CcceeeeccceeEEEEccCCCHHHHHHHH
Q psy11677 251 LHSQVST-REEI-SDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--------HIPVLGHAEGICHVYVDKDADIRKAIKIA 320 (462)
Q Consensus 251 ~v~~v~~-r~~~-~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--------~iPvi~~~~G~ch~yvd~~ad~~~a~~i~ 320 (462)
++++|+. ...+ ..|++ +..||.|..+||...-+.|.+.+. -+||+....|+|++||++|||+++|++.+
T Consensus 725 vvnvV~G~g~~vg~~L~~-hp~v~~V~FTGSt~vg~~I~~~aa~~~~~~~~lkpv~lElGGknp~IV~~dADld~Aa~~i 803 (1026)
T 4f9i_A 725 VFNFTPGRGSVMGDYLVD-HPDISLIAFTGSMETGLRIIERAAKVHPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHV 803 (1026)
T ss_dssp SEEECCCCHHHHHHHHHH-CTTEEEEEEESCHHHHHHHHHHHTSCCTTCCSCCEEEEECCCCEEEEECTTCCHHHHHHHH
T ss_pred eEEEEecCcHHHHHHHHh-CCCCCEEEeCCCHHHHHHHHHHhhcccccccCccceEEecCCCCeEEECCCCCHHHHHHHH
Confidence 9999994 4444 55555 667999999999999999987652 27999999999999999999999999999
Q ss_pred HcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 321 RSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 321 ~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+.|+..+.|- .|.|...+..|+.|
T Consensus 804 v~saf~~aGQ----~C~A~~rl~V~~~i 827 (1026)
T 4f9i_A 804 LYSAFGFQGQ----KCSACSRVIVLDAV 827 (1026)
T ss_dssp HHHHHGGGGC----STTCEEEEEEEGGG
T ss_pred HHHHHhCCCC----CCCCCceEEecHHH
Confidence 9999998875 34444444444443
|
| >3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-10 Score=121.96 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=114.3
Q ss_pred HHHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccc--------------cCC-----CCCCCCceeeE
Q psy11677 165 NSATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTD--------------ASA-----QSGGTPVEVLA 217 (462)
Q Consensus 165 ~iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~--------------~~d-----~~~~~PlGVi~ 217 (462)
.+++.|+++.++|..+...|.-+ +..+++.++ ..+. .+. ...+.|+||++
T Consensus 80 ~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~ 156 (503)
T 3iwj_A 80 AIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDDVAGCFE---YYADLAEKLDARQKAPVSLPMDTFKSHVLREPIGVVG 156 (503)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTEEECCSCTTEEEEEEEEECCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHhcCCccccccccCCCccceEEEcCCceEE
Confidence 38888999988888877665422 222222222 1111 110 12488999999
Q ss_pred EEEeCCCCcc----------------c-c-cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEE
Q psy11677 218 EIWKNETLNT----------------T-V-PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLI 274 (462)
Q Consensus 218 ~IyEsr~~Pn----------------v-~-~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDli 274 (462)
+|-..- .|- | + +...+-.|+ ..|++.+.++ +++++|+. ...+.+.|-.+..||.|
T Consensus 157 ~I~PwN-~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~-~~l~~l~~~aGlP~gvv~vv~g~~~~~g~~L~~~~~v~~I 234 (503)
T 3iwj_A 157 LITPWN-YPMLMATWKVAPALAAGCAAILKPSELASLTC-LELGEICKEVGLPPGVLNILTGLGPEAGAPLATHPDVDKV 234 (503)
T ss_dssp EECCSS-SHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH-HHHHHHHHHHTCCTTSEEECCSCHHHHTHHHHTCTTCCEE
T ss_pred EECCCc-hHHHHHHHHHHHHHhcCCeEEEECCCcchHHH-HHHHHHHHHhCcCcCeEEEEeCCcHHHHHHHhhCCCccEE
Confidence 995221 131 1 1 116677777 7777777665 89999994 44555555455679999
Q ss_pred eecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 275 IPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 275 IPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
..+||...-+.|.+.+. .+||+....|+|++||++|||+++|++.++.+|..+.|-
T Consensus 235 ~FTGS~~~G~~i~~~aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ 292 (503)
T 3iwj_A 235 AFTGSSATGSKIMTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQ 292 (503)
T ss_dssp EEESCHHHHHHHHHHHGGGTCCEEEECCCCEEEEECSSSCHHHHHHHHHHHHTGGGGC
T ss_pred EEECcHHHHHHHHHHHhcCCCCEEEECCCCCceEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999998777776652 379999999999999999999999999999999998875
|
| >4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.2e-10 Score=117.45 Aligned_cols=176 Identities=8% Similarity=0.064 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTF 200 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~ 200 (462)
+......|+.|...... +++.|+++.++|......|.-+ ++.++..++ .
T Consensus 64 v~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~l~~~a~~~~---~ 140 (498)
T 4f3x_A 64 IDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPINAVKNDELPAIIDCWRFFAGAVR---N 140 (498)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHH---H
Confidence 55555666666543221 8888988888888766554321 333333333 2
Q ss_pred ccccC------C---CCCCCCceeeEEEEeCCCCcc----------------c-c-cccccccchHHHHHhhcCCC---C
Q psy11677 201 FTDAS------A---QSGGTPVEVLAEIWKNETLNT----------------T-V-PKKHAKTSQCKYFTKMLPRY---P 250 (462)
Q Consensus 201 ~a~~~------d---~~~~~PlGVi~~IyEsr~~Pn----------------v-~-~~~ea~~sn~~~l~~al~~~---~ 250 (462)
+.... . ...+.|+||+++|-..- .|- | + +...+-.|+ ..|++.+.++ +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN-~P~~~~~~~~a~ALaaGNtVVlKPs~~tp~t~-~~l~~l~~ealP~g 218 (498)
T 4f3x_A 141 LHAPAAGEYLPGHTSMIRRDPIGIVGSIAPWN-YPLMMMAWKLAPAIGGGNTVVFKPSEQTPLTA-LKLARLIADILPEG 218 (498)
T ss_dssp CEEECBEEEETTEEEEEEEEECCEEEEECCSS-SHHHHHHHHHHHHHHTTCEEEEECCTTCCHHH-HHHHHHHHTTSCTT
T ss_pred hcCccccCCcccccceEEEcCcceEEEECCCc-hHHHHHHHHHHHHHHcCCeEEEECCcccHHHH-HHHHHHHHHhCCcC
Confidence 21111 0 12489999999995321 131 1 1 116667777 7777666665 9
Q ss_pred eEEeecC-H-HHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVST-R-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~~-r-~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++++|+. . +....|++ +..||.|..+||...-+.|.+.+. .+||.....|+|++||++|||+++|++.++.+|..
T Consensus 219 v~nvv~g~~~~~g~~L~~-~p~v~~V~FTGS~~~G~~i~~~aa~~~k~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~~~ 297 (498)
T 4f3x_A 219 VVNVITGRGETVGNALIN-HPKVGMVSITGDIATGKKVLAAAAKTVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYY 297 (498)
T ss_dssp SEEECCCCTTTHHHHHHT-CTTCCEEEEESCHHHHHHHHHHHHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHTTG
T ss_pred eEEEEeCCchHHHHHHHh-CCCcCEEEEECCHHHHHHHHHHHHhhCCceeecCCCCCcEEECCCCCHHHHHHHHHHHHHh
Confidence 9999993 4 44455555 556999999999988888776542 48999999999999999999999999999999999
Q ss_pred CCCC
Q psy11677 327 LQGL 330 (462)
Q Consensus 327 ~~~~ 330 (462)
+.|-
T Consensus 298 n~GQ 301 (498)
T 4f3x_A 298 NAGQ 301 (498)
T ss_dssp GGGC
T ss_pred cCCC
Confidence 8876
|
| >2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-10 Score=121.51 Aligned_cols=191 Identities=12% Similarity=0.105 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------HHHHHhhccccccccccCC-
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIGTFFTDASA- 206 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~t~~a~~~d- 206 (462)
+..-...|++|.+.+.. +|+.|+++.++|......|.-+ +...++.++ ..+.+.+
T Consensus 46 v~~Av~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~~v~~~~~~~~---~~a~~~~~ 122 (490)
T 2wme_A 46 VERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLE---YYAGLVPA 122 (490)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHTTTHHHHHHHHHH---HHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH---HHHhcccc
Confidence 44444556665544333 8888888888887665444211 222233333 2222111
Q ss_pred --------------CCCCCCceeeEEEEeCCCCc-cc---------------c--cccccccchHHHHHhhcCCC----C
Q psy11677 207 --------------QSGGTPVEVLAEIWKNETLN-TT---------------V--PKKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 207 --------------~~~~~PlGVi~~IyEsr~~P-nv---------------~--~~~ea~~sn~~~l~~al~~~----~ 250 (462)
...+.|+||+++|-.-- .| +. + +.+.+-.|+ ..|++.+.++ +
T Consensus 123 ~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN-fP~~~~~~~~a~ALaaGNtVVlKPse~tp~ta-~~l~~l~~eaGlP~g 200 (490)
T 2wme_A 123 IEGEQIPLRETSFVYTRREPLGVVAGIGAWN-YPVQIALWKSAPALAAGNAMIFKPSEVTPLTA-LKLAEIYTEAGVPDG 200 (490)
T ss_dssp CCEEEEEEETTEEEEEEEEECSEEEEECCSS-SHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH-HHHHHHHHHHTCCTT
T ss_pred ccCccccccCCcceeEEecceeEEEEecccc-CcchhhhhhHHHHHHcCCeEEEECCcCCHHHH-HHHHHHHHHhCCCCC
Confidence 12478999999993211 13 21 1 116677787 7777666665 8
Q ss_pred eEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++++|+ +..++.+.|-.+..||.|.-.||...-+.+.+.+ .-.||..-..|+|++||++|||+++|++.++.+|+.
T Consensus 201 v~~vv~g~g~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~~a~~~lk~v~lELGGk~p~iV~~dAdl~~A~~~~~~~~~~ 280 (490)
T 2wme_A 201 VFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFF 280 (490)
T ss_dssp SEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHHHHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHG
T ss_pred cEEEEeCChHHHHHHHHhCCCCCEEEEECChHHHHHHHHhhhccCCceEEEEcCCcCeEEEccCccHHHHHHHHHHHHhc
Confidence 999999 4455666666677799999999987766654311 137997777799999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHhhhcccc
Q psy11677 327 LQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
+.|= .|.+...+..|..|
T Consensus 281 n~GQ----~C~a~~rv~V~~~i 298 (490)
T 2wme_A 281 SSGQ----VCTNGTRVFIHRSQ 298 (490)
T ss_dssp GGGC----CTTCCCEEEEEGGG
T ss_pred cCCC----cCCCceeeccchhH
Confidence 8775 34444444444443
|
| >3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.7e-10 Score=118.68 Aligned_cols=175 Identities=15% Similarity=0.085 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRKIGTF 200 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~i~t~ 200 (462)
+......|+.|.+.+.. +++.|+++.++|......|.-+ ++.+++.++ .
T Consensus 65 v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~~~~---~ 141 (497)
T 3i44_A 65 ADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPIDMALNAQTATGSSHIRNFIKAYK---E 141 (497)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhh---c
Confidence 55556666666553222 8888998888888766655321 233333222 1
Q ss_pred cc---ccC----CCCC-CCCceeeEEEEeCCCCc-cc----------------c-cccccccchHHHHHhhcCCC----C
Q psy11677 201 FT---DAS----AQSG-GTPVEVLAEIWKNETLN-TT----------------V-PKKHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 201 ~a---~~~----d~~~-~~PlGVi~~IyEsr~~P-nv----------------~-~~~ea~~sn~~~l~~al~~~----~ 250 (462)
.. ..+ .... +.|+||+++|-..- .| .. + +.+.+-.|+ ..|++.+.++ +
T Consensus 142 ~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN-~P~~~~~~~~a~ALaaGN~VVlKps~~tp~t~-~~l~~l~~eaGlP~g 219 (497)
T 3i44_A 142 FSFQEALIEGNEQAILHYDAIGVVGLITPWN-WPMNQVTLKVIPALLAGCTMVLKPSEIAPLSA-MLFAEILDEAALPSG 219 (497)
T ss_dssp CCSEEESSTTCSSCEEEEEECCEEEEECCSS-SHHHHHHHHHHHHHHHTCEEEEECCTTSCHHH-HHHHHHHHHTTCCTT
T ss_pred ccccccccCCceeEEEeecCceEEEEECCCc-chHHHHHHHHHHHHHcCCEEEEECCcccHHHH-HHHHHHHHHhCcCCC
Confidence 11 010 1234 88999999994221 13 11 1 116667777 7777777776 8
Q ss_pred eEEeecC-H-HHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCC
Q psy11677 251 LHSQVST-R-EEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRV 326 (462)
Q Consensus 251 ~v~~v~~-r-~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~ 326 (462)
++++|+. . +....|++ +..||.|..+||...-+.|.+.+. .+||+....|+|++||++||| ++|++.++.+|..
T Consensus 220 vvnvv~g~~~~~g~~L~~-hp~v~~I~FTGS~~~G~~i~~~aa~~~k~v~lElGGk~p~IV~~dAD-~~Aa~~i~~~~f~ 297 (497)
T 3i44_A 220 VFNLINGDGANVGSYLSA-HPDLEMISFTGSTRAGKDISKNASNTLKRVCLELGGKGANIIFADAD-IDALQRGVRHCFY 297 (497)
T ss_dssp SEEECCCCTTTHHHHHHH-CTTCCEEEEESCHHHHHHHHHHHHTTTCEEEEECCCCCEEEECTTSC-TTHHHHHHHHHHG
T ss_pred eEEEEeCCChHHHHHHHh-CCCcCEEEEeCcHHHHHHHHHHHhhcCCceeeccCCCCceEECCChh-HHHHHHHHHHHHh
Confidence 9999993 4 44455555 566999999999988888877652 489999999999999999999 9999999999999
Q ss_pred CCCC
Q psy11677 327 LQGL 330 (462)
Q Consensus 327 ~~~~ 330 (462)
+.|-
T Consensus 298 n~GQ 301 (497)
T 3i44_A 298 NSGQ 301 (497)
T ss_dssp GGGC
T ss_pred cCCC
Confidence 8887
|
| >3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-10 Score=121.85 Aligned_cols=160 Identities=15% Similarity=0.146 Sum_probs=116.7
Q ss_pred HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccCC----------------CCCCCCceeeEEEEe
Q psy11677 166 SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDASA----------------QSGGTPVEVLAEIWK 221 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~d----------------~~~~~PlGVi~~IyE 221 (462)
+++.|+++.++|......|.-+ +..+++.++ ..+...+ ..++.|+||+++|-.
T Consensus 103 ~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~---~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVV~~I~P 179 (520)
T 3ed6_A 103 IADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFM---YFAGLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITP 179 (520)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHTTSCCEEEECCSSTTEEEEEEEEECCEEEEECC
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH---HHHHHHHHhcCeecccCCCCCcccccccCccEEEEECC
Confidence 8899999999988877766432 333344433 2222211 124899999999942
Q ss_pred CCCCcc----------------c-c-cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEEeecC
Q psy11677 222 NETLNT----------------T-V-PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLIIPRG 278 (462)
Q Consensus 222 sr~~Pn----------------v-~-~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDliIPrG 278 (462)
.- .|- | + +.+.+-.|+ ..|++.+.++ +++++|+. ...+.+.|-.+..||.|..+|
T Consensus 180 wN-~P~~~~~~~~apALaaGNtVVlKPs~~tp~t~-~~l~~l~~eaGlP~gvvnvv~g~~~~~g~~L~~~p~vd~V~FTG 257 (520)
T 3ed6_A 180 WN-YPLLQASWKIAPALATGCSLVMKPSEITPLTT-IRVFELMEEVGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTG 257 (520)
T ss_dssp SS-SHHHHHHHHHHHHHHHTCEEEEECCTTCCHHH-HHHHHHHHHHCCCTTSEEECCSCCTTHHHHHHHCTTCSEEEEES
T ss_pred Cc-cHHHHHHHHHHHHHHcCCEEEEEcCCcchHHH-HHHHHHHHHhCCCCCeEEEEeCCChHHHHHHHhCCCcCEEEEEC
Confidence 21 131 1 1 116777788 7777777665 89999994 455666565677799999999
Q ss_pred ChhHHHHHHhhCC--CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 279 SSDLVRSIQQKSQ--HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 279 ~~~lv~~v~~~s~--~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
|...-+.|.+.+. -+||.-...|+++++|++|||+++|++.++.+|..+.|-
T Consensus 258 S~~vG~~i~~~aa~~l~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ 311 (520)
T 3ed6_A 258 GIETGKHIMKNAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQ 311 (520)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGT
T ss_pred CHHHHHHHHHHhhhcCCCEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999888877652 378877777999999999999999999999999998885
|
| >2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-09 Score=117.09 Aligned_cols=175 Identities=11% Similarity=-0.010 Sum_probs=122.1
Q ss_pred cHHHHHHHHHHHH-HHHHH------------HHHHHHhCCchhhcCchhcHHH---------------HHHHHhhccccc
Q psy11677 148 PVEVLAENVNLKM-EILVN------------SATWALDRGVSVVICNGMQKEA---------------IKQIVAGRKIGT 199 (462)
Q Consensus 148 ~~~~ia~~AK~As-~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------~~~~~~~~~i~t 199 (462)
.+......|+.|. +.+.. +++.|+++.++|.+....|.-+ ++.++...+
T Consensus 44 dv~~Av~aA~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~~--- 120 (534)
T 2y53_A 44 DLARAFSFAREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTRNDSAVDIDGGIFTLSYYAKLGA--- 120 (534)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4666666777764 43322 8899999999998887765432 333333322
Q ss_pred ccccc-------------CC----CCCCCCc-eeeEEEEeCCCCcc-ccc-----------------ccccccchHHHHH
Q psy11677 200 FFTDA-------------SA----QSGGTPV-EVLAEIWKNETLNT-TVP-----------------KKHAKTSQCKYFT 243 (462)
Q Consensus 200 ~~a~~-------------~d----~~~~~Pl-GVi~~IyEsr~~Pn-v~~-----------------~~ea~~sn~~~l~ 243 (462)
.+..+ ++ ..++.|+ ||+++|+..- .|- .+. .+.+-.|+ ..|+
T Consensus 121 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~P~~GVv~~I~PwN-~P~~~~~~~~a~ALaaGN~VVlKPs~~tp~~~-~~l~ 198 (534)
T 2y53_A 121 SLGEVHALRDGSAESLSKDRSFSAQHVLSPTRGVALFINAFN-FPSWGLWEKAAPALLSGVPVIVKPATATAWLT-QRMV 198 (534)
T ss_dssp TTCSCSEEEEEEEEECSTTSSEEEEEEEEECSSCEEEECCTT-CTTHHHHHHHHHHHHTTCCEEEECCGGGHHHH-HHHH
T ss_pred hccccccccCCccccCCCCCcccceEEEecCCCEEEEECCCc-hHHHHHHHHHHHHHHcCCEEEEECCCcchHHH-HHHH
Confidence 22211 11 1247897 9999998643 242 111 16667777 7777
Q ss_pred hhcCC-----CCeEEeecC-HHHHHHHhcCCCCccEEeecCChhHHHHHHhhC----CCcceeeeccceeEEEEccCC--
Q psy11677 244 KMLPR-----YPLHSQVST-REEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS----QHIPVLGHAEGICHVYVDKDA-- 311 (462)
Q Consensus 244 ~al~~-----~~~v~~v~~-r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s----~~iPvi~~~~G~ch~yvd~~a-- 311 (462)
+.+.+ .+++++|+. .+ ++++.-..+|.|..+||....+.|++.+ +.+||+....|+|++||++||
T Consensus 199 ~l~~~aG~lP~gvv~vv~g~~~---~l~~~l~~vd~V~FTGS~~~G~~i~~~aa~a~~~k~v~lELGGk~p~iV~~dA~~ 275 (534)
T 2y53_A 199 ADVVDAGILPPGALSIICGSSA---GLLDQIRSFDVVSFTGSADTAATLRAHPAFVQRGARLNVQADSLNSAILCADATP 275 (534)
T ss_dssp HHHHHHTCSCTTSEEECCSCCT---TSGGGCCTTCEEEEESCHHHHHHHHTSHHHHTTCCEEEEECCCCEEEEECTTCCT
T ss_pred HHHHHhCCCCCCeEEEEeCChH---HHHhcccccCEEEEECCHHHHHHHHHhhhhhcCCCcEEEEcCCCCeEEECCCccc
Confidence 55544 288999983 22 2444323599999999999999998753 259999999999999999999
Q ss_pred ---CHHHHHHHHHcccCCCCCC
Q psy11677 312 ---DIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 312 ---d~~~a~~i~~nak~~~~~~ 330 (462)
|+++|++.++.+|+.+.|-
T Consensus 276 ~~~Dl~~Aa~~i~~~~~~n~GQ 297 (534)
T 2y53_A 276 DTPAFDLFIKEVVREMTVKSGQ 297 (534)
T ss_dssp TSHHHHHHHHHHHHHHHGGGGC
T ss_pred cccCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999998885
|
| >2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-09 Score=117.10 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=113.5
Q ss_pred HHHHHHhCCchhhcCchhcHHH----------------HHHHHhhcc--cccccccc---CC----CCCCCCceeeEEEE
Q psy11677 166 SATWALDRGVSVVICNGMQKEA----------------IKQIVAGRK--IGTFFTDA---SA----QSGGTPVEVLAEIW 220 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~----------------~~~~~~~~~--i~t~~a~~---~d----~~~~~PlGVi~~Iy 220 (462)
+++.|.++.++|......|.-+ ++..+...+ .|..+..- +. ..++.|+||+++|.
T Consensus 107 ~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~P~GVV~~I~ 186 (517)
T 2o2p_A 107 LADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVI 186 (517)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCCCHHHHHHTTTHHHHHHHHHHHHHGGGCCEEEECCCCCTTSCEEEEEEEEECCEEEEEC
T ss_pred HHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCCCceEEEEecCCccEEEEC
Confidence 8888888888887766554322 333333222 11111110 11 12478999999998
Q ss_pred eCCCCccc-----------------c-cccccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHhcCCCCccEEeec
Q psy11677 221 KNETLNTT-----------------V-PKKHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLLSMEKHIDLIIPR 277 (462)
Q Consensus 221 Esr~~Pnv-----------------~-~~~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll~~~~~iDliIPr 277 (462)
..- .|-. + +.+.+-.|+ ..|++.+.++ +++++|+. ...+.+.|-.+..||.|...
T Consensus 187 PwN-~P~~~~~~~~a~ALaaGNtVVlKps~~tp~ta-~~l~~l~~eaGlP~gvv~vv~g~g~~~g~~L~~~~~v~~V~FT 264 (517)
T 2o2p_A 187 PWN-YPLMMLSWKTAACLAAGNTVVIKPAQVTPLTA-LKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFT 264 (517)
T ss_dssp CSS-SHHHHHHHHHHHHHHTTCEEEEECCTTCCHHH-HHHHHHHHHTTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCc-chHHHHHHHHHHHHHcCCEEEEECCCccHHHH-HHHHHHHHHhCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEE
Confidence 543 2321 1 116666777 7777777766 99999984 33444444445679999999
Q ss_pred CChhHHHHHHhhCC---CcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 278 GSSDLVRSIQQKSQ---HIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 278 G~~~lv~~v~~~s~---~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
||...-+.|.+.+. .+||.....|++++||++|||+++|++.++.+|..+.|=
T Consensus 265 GS~~~G~~I~~~aa~~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ 320 (517)
T 2o2p_A 265 GSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGE 320 (517)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGC
T ss_pred CCHHHHHHHHHHhHHhcCCeEEEECCCcCeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999888877542 499999999999999999999999999999999987765
|
| >4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=105.42 Aligned_cols=177 Identities=11% Similarity=0.014 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhC-CchhhcCchhcHHH----------------HHHHHhhccccc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDR-GVSVVICNGMQKEA----------------IKQIVAGRKIGT 199 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~-~~~IL~AN~~D~~~----------------~~~~~~~~~i~t 199 (462)
+......|+.|.+.... +|+.|..+ ++++.++...|.-+ ++..+...+
T Consensus 102 v~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~~el~~~~~~e~Gk~~~ea~~e~v~~~~~~~~~~a~~~~--- 178 (563)
T 4e3x_A 102 LNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAV--- 178 (563)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHH---
Confidence 55555666666654333 88888888 78877765544321 222222222
Q ss_pred ccccc-C--C------CCCCCCceeeEEEEeCCCCcc----------------cc-cccccccchHHHHHhhcCCC----
Q psy11677 200 FFTDA-S--A------QSGGTPVEVLAEIWKNETLNT----------------TV-PKKHAKTSQCKYFTKMLPRY---- 249 (462)
Q Consensus 200 ~~a~~-~--d------~~~~~PlGVi~~IyEsr~~Pn----------------v~-~~~ea~~sn~~~l~~al~~~---- 249 (462)
++..- + . ...+.|+||+++|..-- .|- |+ +.+.+-.|+ ..|++.+.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~r~p~GVV~~I~PwN-fP~~~~~~~~apALaGNtVVlKPs~~tp~sa-~~l~~ll~eAGlP~ 256 (563)
T 4e3x_A 179 ELEGEQPISVPPSTNHTVYRGLEGFVAAISPFN-FTAIGGNLAGAPALMGNVVLWKPSDTAMLAS-YAVYRILREAGLPP 256 (563)
T ss_dssp HHTTCCCCCCTTEEEEEECCBCSSEEEEECCSS-CHHHHHHHHHHHHHTTCCEEEECCGGGHHHH-HHHHHHHHHTTCCT
T ss_pred HhhCCCccCCCCCcceEEEecCceEEEEECCch-HHHHHHHHHHHHhhcCCEEEEECCCCChHHH-HHHHHHHHHhCCCC
Confidence 22110 0 0 12478899999995211 121 11 116667777 7777877776
Q ss_pred CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCC--Cc------ceeeeccceeEEEEccCCCHHHHHHHH
Q psy11677 250 PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQ--HI------PVLGHAEGICHVYVDKDADIRKAIKIA 320 (462)
Q Consensus 250 ~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~--~i------Pvi~~~~G~ch~yvd~~ad~~~a~~i~ 320 (462)
+++++|+ +...+.+.|-.+..||.|...||...-+.|.+.+. .. ||+....|+++++|++|||+++|++.+
T Consensus 257 Gvvnvv~g~g~~~g~~L~~hp~v~~I~FTGSt~vG~~i~~~aa~~lk~~~~~prv~lElGGk~p~IV~~dADld~Aa~~i 336 (563)
T 4e3x_A 257 NIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQVAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGT 336 (563)
T ss_dssp TSEEECCCCHHHHHHHHTTCTTEEEEEEESCHHHHHHHHHHHHHTTTTCSSCCEEEEECCCCEEEEECTTSCHHHHHHHH
T ss_pred CeEEEEeCCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHHhhCCccccCCceeccCCCCCceeeCCCCCHHHHHHHH
Confidence 8999999 56667676666778999999999998777665431 12 599999999999999999999999999
Q ss_pred HcccCCCCCC
Q psy11677 321 RSGSRVLQGL 330 (462)
Q Consensus 321 ~nak~~~~~~ 330 (462)
+.++..+.|-
T Consensus 337 v~~~f~~~GQ 346 (563)
T 4e3x_A 337 LRSAFEYGGQ 346 (563)
T ss_dssp HHHHHGGGGC
T ss_pred HHHHHhcCCC
Confidence 9999998885
|
| >4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.8e-08 Score=103.09 Aligned_cols=174 Identities=16% Similarity=0.073 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH-------HHHHHhhccccccccccC----
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA-------IKQIVAGRKIGTFFTDAS---- 205 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~-------~~~~~~~~~i~t~~a~~~---- 205 (462)
+......|++|.+.... +++.|+++.++|.+.-..|.-+ ++.+++.++ ..+.+.
T Consensus 30 v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~ev~~~~~~~~---~~~~~~~~~~ 106 (474)
T 4h7n_A 30 LAQQCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEALVNDTGRLSITVLEIDSFLASID---RWCGLAPELL 106 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCSHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH---HHHhhhhhcc
Confidence 55555666666554333 8888888888887665544311 344444443 222211
Q ss_pred --------CC-----CCCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----C
Q psy11677 206 --------AQ-----SGGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----P 250 (462)
Q Consensus 206 --------d~-----~~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~ 250 (462)
.+ ..++|+||+|+|-..- .|-. +.. ..+-.|. ..|.+.+.++ +
T Consensus 107 ~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN-fP~~~~~~~~~~ALaaGN~VVlKps~~tp~~~-~~l~~~~~~ag~p~g 184 (474)
T 4h7n_A 107 QTSAKNTSIPFIALQQSLVPYPLVGVISPWN-FPLTLSMIDTIPALLAGCAVVVKPSEIAPRFV-APLLMALNTVPELRD 184 (474)
T ss_dssp CCEEEECSSTTEEEEEEEEECSEEEEEECSS-SHHHHHHTTHHHHHHHTCEEEEEECTTSCTTH-HHHHHHHTTCTTTTT
T ss_pred cccccCCCCCCccceEEEEeccEEEEECCCC-cHHHHHhcccCcchhcCCceeecccccCchHH-HHHHhhhhhhccccc
Confidence 01 2367999999994211 1421 111 5566677 7777777776 8
Q ss_pred eEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCC
Q psy11677 251 LHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVL 327 (462)
Q Consensus 251 ~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~ 327 (462)
++++|+ +.+....|+. ++|.|.=.||..--+.|.+.+ +.+||.....|+++++|++|||+++|++-++.+|...
T Consensus 185 v~~~v~g~~~~~~~l~~---~v~~v~FTGS~~~G~~i~~~aa~~~~~v~lElGGk~p~iV~~dAdl~~aa~~i~~~~~~n 261 (474)
T 4h7n_A 185 VLIFVEGGGETGANLIN---YVDFVCFTGSVATGREVAETAARRFIPAYLELGGKDPAIVLESANLELATSAILWGAVVN 261 (474)
T ss_dssp TEEECCCCHHHHHHHHT---TCSEEEEESCHHHHHHHHHHHHHHTCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGG
T ss_pred ceeeccccchhhhhhhh---ccceEEeccccchhhhhhhhhhcccccccccCCCcCccccCchhhHHHHHHHHHhhhccC
Confidence 999999 6888888874 399999999998877766543 1589999999999999999999999999999999998
Q ss_pred CCC
Q psy11677 328 QGL 330 (462)
Q Consensus 328 ~~~ 330 (462)
.|-
T Consensus 262 ~GQ 264 (474)
T 4h7n_A 262 TGQ 264 (474)
T ss_dssp GGC
T ss_pred CCC
Confidence 777
|
| >1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=77.28 Aligned_cols=91 Identities=30% Similarity=0.485 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCC-CHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSL-TPSKLKSLSTGLKQ 443 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L-~~~ri~~m~~~l~~ 443 (462)
...+.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-+..+.|+.+++.+++.+ +...++.+++.+++
T Consensus 18 ~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~a~~~~~ 97 (468)
T 1vlu_A 18 QIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVMLQGIKD 97 (468)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999998888999999899999 99999999999999
Q ss_pred HHhCCCCCcccch
Q psy11677 444 IAESSHTNVGKFV 456 (462)
Q Consensus 444 ia~l~dDPvg~v~ 456 (462)
+..++ +|+|++.
T Consensus 98 ~~~~~-~~~g~~~ 109 (468)
T 1vlu_A 98 VAELE-DPVGKVK 109 (468)
T ss_dssp HHHSC-CSSSCEE
T ss_pred HhhcC-CCCCeec
Confidence 99999 7998864
|
| >1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00016 Score=75.31 Aligned_cols=90 Identities=23% Similarity=0.401 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
..+.|++|....+.++.++|.++|+++++.|++++++|.+++.+|+.+.+..|+.+++.+|+.+....++.+++.++..+
T Consensus 19 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~~~~~l~~~a 98 (427)
T 1o20_A 19 KAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIKACETVI 98 (427)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred hCCCCCcccch
Q psy11677 446 ESSHTNVGKFV 456 (462)
Q Consensus 446 ~l~dDPvg~v~ 456 (462)
+.+ ++.|+.+
T Consensus 99 ~~~-~~~g~~~ 108 (427)
T 1o20_A 99 GLK-DPVGEVI 108 (427)
T ss_dssp HSC-CCTTCEE
T ss_pred hcc-cccCccc
Confidence 998 6877654
|
| >4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0002 Score=74.90 Aligned_cols=93 Identities=23% Similarity=0.371 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
...++.|++|....+.++.++|.++|+++++.|++++++|.+++.+|+.+.+..|++++..+|+.+....+..+++.++.
T Consensus 29 ~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~~~~~l~~ 108 (444)
T 4ghk_A 29 TDVGRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVEGLRQ 108 (444)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999987776678899999999999999999999999
Q ss_pred HHhCCCCCcccchh
Q psy11677 444 IAESSHTNVGKFVK 457 (462)
Q Consensus 444 ia~l~dDPvg~v~~ 457 (462)
.+.+. +|.|+.+.
T Consensus 109 ~a~~~-~~~g~~~~ 121 (444)
T 4ghk_A 109 VATLP-DPIGEMSN 121 (444)
T ss_dssp HHHSC-CCTTCEEE
T ss_pred HHhhc-cccCccCC
Confidence 99999 68887653
|
| >2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00084 Score=70.60 Aligned_cols=89 Identities=49% Similarity=0.689 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|...++ .|+..++.+||......+..+++.++..+
T Consensus 34 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~-~~~Gk~~~~rl~~a~~ev~~~~~~~~~~a 112 (463)
T 2h5g_A 34 QGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAE-GRLAAPLLKRLSLSTSKLNSLAIGLRQIA 112 (463)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-TTSCHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccc-ccCCCchhhhhhhhHHHHHHHHHHHHHHH
Confidence 35578889899999999999999999999999999999999999997766 66778898999888899999999999999
Q ss_pred -hCCCCCcccch
Q psy11677 446 -ESSHTNVGKFV 456 (462)
Q Consensus 446 -~l~dDPvg~v~ 456 (462)
.++ ++.|+++
T Consensus 113 ~~~~-~~~g~~~ 123 (463)
T 2h5g_A 113 ASSQ-DSVGRVL 123 (463)
T ss_dssp HHCT-TSTTCEE
T ss_pred HhhH-hhcCccc
Confidence 556 6888764
|
| >3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.072 Score=55.61 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..++.|++|....+.++.++|.++|+++|+.|++++++|.+++.+|.-+. +.++....+....+.++.+++.++++
T Consensus 32 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea~~~ev~~~~~~~~~~a~~~~~~ 107 (457)
T 3lns_A 32 SLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKP----KDVVDLAEIGAVLHEIDFALAHLDEW 107 (457)
T ss_dssp HHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCC----HHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999999999999986532 34555567777788899999988887
Q ss_pred Hh
Q psy11677 445 AE 446 (462)
Q Consensus 445 a~ 446 (462)
..
T Consensus 108 ~~ 109 (457)
T 3lns_A 108 VA 109 (457)
T ss_dssp TS
T ss_pred hc
Confidence 64
|
| >3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.12 Score=54.81 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-+.. ..+. ..+......++.++..++++
T Consensus 67 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~~a~-~ev~~~~~~l~~~a~~~~~~ 141 (528)
T 3v4c_A 67 RACEAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPE----ARLN-GERGRTTGQLRLFADHIEKG 141 (528)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH----HHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 345678999999999999999999999999999999999999998864321 1222 23445667888888888875
Q ss_pred HhCC
Q psy11677 445 AESS 448 (462)
Q Consensus 445 a~l~ 448 (462)
..+.
T Consensus 142 ~~~~ 145 (528)
T 3v4c_A 142 DYLD 145 (528)
T ss_dssp GGGC
T ss_pred cccc
Confidence 4444
|
| >3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.19 Score=52.68 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..++.|++|.+..+.++.++|.++|+++++.|++++++|.+++.+|.-+. +.++....+......++.+++.+++.
T Consensus 22 ~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea~~~ev~~~~~~~~~~~~~~~~~ 97 (469)
T 3sza_A 22 EAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKN----EWNAYYEEVVYVLEEIEYMIQKLPEW 97 (469)
T ss_dssp HHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567899999999999999999999999999999999999999886432 23344455555667788888888777
Q ss_pred Hh
Q psy11677 445 AE 446 (462)
Q Consensus 445 a~ 446 (462)
+.
T Consensus 98 ~~ 99 (469)
T 3sza_A 98 AA 99 (469)
T ss_dssp HS
T ss_pred hc
Confidence 64
|
| >1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.14 Score=54.17 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-+.. ..+..+ +...-+.++.++..++++.
T Consensus 35 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~~a~~E-v~~~~~~~~~~a~~~~~~~ 109 (510)
T 1ez0_A 35 AATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPE----VRLTGE-IARTANQLRLFADVVNSGS 109 (510)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH----HHHHHH-HHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH----HHHHHH-HHHHHHHHHHHHHHHHhCc
Confidence 45578889899999999999999999999999999999999999863322 223323 3345567777777777633
Q ss_pred hC
Q psy11677 446 ES 447 (462)
Q Consensus 446 ~l 447 (462)
-+
T Consensus 110 ~~ 111 (510)
T 1ez0_A 110 YH 111 (510)
T ss_dssp GG
T ss_pred cc
Confidence 33
|
| >3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.16 Score=53.43 Aligned_cols=77 Identities=12% Similarity=0.143 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-+- +.++. ..+...-..++.++..++++.
T Consensus 31 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea~-~ev~~~~~~~~~~a~~~~~~~ 105 (484)
T 3ros_A 31 AINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKL----LSESK-EEVELCVSICNYYADHGPEML 105 (484)
T ss_dssp HHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999999999999999999999986432 23333 345556677888888887775
Q ss_pred hC
Q psy11677 446 ES 447 (462)
Q Consensus 446 ~l 447 (462)
..
T Consensus 106 ~~ 107 (484)
T 3ros_A 106 KP 107 (484)
T ss_dssp SC
T ss_pred CC
Confidence 54
|
| >2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=1.1 Score=47.01 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|....+.++.++|.++|+++++.|++++++|.+++.+|.- .+..- .+ ..+..+++.++..+
T Consensus 49 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G------k~~~e-a~-----~ev~~~~~~l~~~a 116 (479)
T 2imp_A 49 AIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGG------KIQQL-AE-----VEVAFTADYIDYMA 116 (479)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC------CCHHH-HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCHHH-HH-----HHHHHHHHHHHHHH
Confidence 34578888889999999999999999999999999999999888862 22111 11 45788899999988
Q ss_pred hCCCCCcccc
Q psy11677 446 ESSHTNVGKF 455 (462)
Q Consensus 446 ~l~dDPvg~v 455 (462)
...+...|+.
T Consensus 117 ~~~~~~~~~~ 126 (479)
T 2imp_A 117 EWARRYEGEI 126 (479)
T ss_dssp TTTTTCCCEE
T ss_pred HHHHHhhCCc
Confidence 7763445544
|
| >4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.28 Score=51.43 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|.+..+.++.++|.++|+++++.|++++++|.++..+|. |.+.. .....+..+++.++..+
T Consensus 49 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~------Gk~~~------~a~~ev~~~~~~~~~~a 116 (485)
T 4dng_A 49 AFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARET------GGTII------KSTIELEQTIAILDEAM 116 (485)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH------CCCHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHH------HHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999997776664 32211 11235788888888888
Q ss_pred hCCCCCcc
Q psy11677 446 ESSHTNVG 453 (462)
Q Consensus 446 ~l~dDPvg 453 (462)
... ++++
T Consensus 117 ~~~-~~~~ 123 (485)
T 4dng_A 117 TYT-GELG 123 (485)
T ss_dssp HHG-GGCS
T ss_pred HHH-HHhC
Confidence 776 4543
|
| >2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=0.19 Score=53.52 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=57.7
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGS-RVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 366 ~~~~Ar~As-~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..+.|++|+ +..+.++.++|.++|+++|+.|++++++|.+++.+|.-+. +.++.. ++...-..++.++...+++
T Consensus 48 Av~aA~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea~~-ev~~~~~~~~~~a~~~~~~ 122 (534)
T 2y53_A 48 AFSFAREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTT----RNDSAV-DIDGGIFTLSYYAKLGASL 122 (534)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 345678885 8899999999999999999999999999999988886322 223332 4444556677777766666
Q ss_pred HhCC
Q psy11677 445 AESS 448 (462)
Q Consensus 445 a~l~ 448 (462)
..++
T Consensus 123 ~~~~ 126 (534)
T 2y53_A 123 GEVH 126 (534)
T ss_dssp CSCS
T ss_pred cccc
Confidence 5544
|
| >3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.41 Score=49.91 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 364 SLFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 364 ~~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
-..++.||+|.+..+.++.++|.++|+++++.|.+++++|.+++.+|.-
T Consensus 15 ~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 63 (464)
T 3k9d_A 15 RNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETG 63 (464)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 3456789999999999999999999999999999999999999888754
|
| >3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.35 E-value=0.46 Score=50.18 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|.+..+.++.++|.++|+++++.|++++++|.+++.+|.-+. +.++. ..+..+++.++..+
T Consensus 55 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~~a~--------~Ev~~~~~~~~~~a 122 (508)
T 3r64_A 55 AYEAAKKAQAEWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGST----RSKAN--------LEITLAGNITKESA 122 (508)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCC----HHHHH--------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC----HHHHH--------HHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999998888775321 11111 14788889999999
Q ss_pred hCCCCCccc
Q psy11677 446 ESSHTNVGK 454 (462)
Q Consensus 446 ~l~dDPvg~ 454 (462)
... +++..
T Consensus 123 ~~~-~~~~~ 130 (508)
T 3r64_A 123 SFP-GRVHG 130 (508)
T ss_dssp TST-TTCCE
T ss_pred HHh-hhhcC
Confidence 888 55543
|
| >2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A* | Back alignment and structure |
|---|
Probab=89.89 E-value=0.48 Score=49.82 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-+. +.++..+ +...++.++..+
T Consensus 53 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea~~e--------v~~~~~~~~~~a 120 (487)
T 2w8n_A 53 AVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKP----LKEAHGE--------ILYSAFFLEWFS 120 (487)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHHHH--------HHHHHHHHHHHH
Confidence 3557899999999999999999999999999999999999999886322 1222222 556666666666
Q ss_pred hCC
Q psy11677 446 ESS 448 (462)
Q Consensus 446 ~l~ 448 (462)
+..
T Consensus 121 ~~~ 123 (487)
T 2w8n_A 121 EEA 123 (487)
T ss_dssp HHG
T ss_pred HHH
Confidence 443
|
| >3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=89.45 E-value=0.55 Score=49.13 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
.++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-
T Consensus 50 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~G 96 (478)
T 3ty7_A 50 AVEAADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELG 96 (478)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 45678999999999999999999999999999999999999888864
|
| >3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=89.35 E-value=0.54 Score=49.91 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-+. +.++ .+..+++.++..+
T Consensus 57 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea----------ev~~~~~~~~~~a 122 (517)
T 3r31_A 57 AIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKP----IQET----------IVADPTSGADAFE 122 (517)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHH----------HHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHH----------HHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999886432 1111 4555666666666
Q ss_pred hCC
Q psy11677 446 ESS 448 (462)
Q Consensus 446 ~l~ 448 (462)
...
T Consensus 123 ~~~ 125 (517)
T 3r31_A 123 FFG 125 (517)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
|
| >3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C} | Back alignment and structure |
|---|
Probab=89.19 E-value=0.57 Score=49.36 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
.++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-
T Consensus 55 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~G 101 (497)
T 3k2w_A 55 ALEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQG 101 (497)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45678999999999999999999999999999999999998888754
|
| >1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A | Back alignment and structure |
|---|
Probab=89.10 E-value=0.59 Score=49.27 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
.++.|++|....+.++.++|.++|+++|+.|++++++|.+++.+|.
T Consensus 65 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 110 (495)
T 1wnd_A 65 AVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNC 110 (495)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888999999999999999999999999999999999998886
|
| >3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.77 E-value=0.63 Score=48.89 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
..++.|++|....+.++.++|.++|+++++.|++++++|.+++.+|.-
T Consensus 46 ~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 93 (490)
T 3ju8_A 46 AAVCAAREAFPAWARRPLEQRIELLERFAATLKSRADELARVIGEETG 93 (490)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345678999999999999999999999999999999999999988863
|
| >1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A* | Back alignment and structure |
|---|
Probab=88.75 E-value=0.25 Score=52.21 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=54.9
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSR---VLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLK 442 (462)
Q Consensus 366 ~~~~Ar~As~---~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~ 442 (462)
..+.|++|.+ ..+.++.++|.++|+++++.|++++++|.+++.+|.-+. +.+++...+...-+.++.++..++
T Consensus 63 av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~e~~~~ev~~~~~~~~~~a~~~~ 138 (501)
T 1bxs_A 63 AVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKL----FSNAYLMDLGGCIKTLRYCAGWAD 138 (501)
T ss_dssp HHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCC----HHHHHHTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888887 799999999999999999999999999999998886322 222334444444556666665555
Q ss_pred HH
Q psy11677 443 QI 444 (462)
Q Consensus 443 ~i 444 (462)
++
T Consensus 139 ~~ 140 (501)
T 1bxs_A 139 KI 140 (501)
T ss_dssp GC
T ss_pred Hh
Confidence 43
|
| >3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.73 E-value=0.16 Score=54.08 Aligned_cols=75 Identities=12% Similarity=0.271 Sum_probs=55.3
Q ss_pred HHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGS--RVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 366 ~~~~Ar~As--~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
.++.|++|. ...+.++.++|.++|+++|+.|++++++|.+++.+|.-+ .+.++ ...+...-+.++.++..+++
T Consensus 66 av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk----~~~ea-~~ev~~~~~~l~~~a~~~~~ 140 (528)
T 3u4j_A 66 AVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALIESLEVGK----PIAQA-RGEIGFCADLWSYAAGQARA 140 (528)
T ss_dssp HHHHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCC----CHHHH-HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345688888 678999999999999999999999999999999888642 12233 33444455566666666655
Q ss_pred HH
Q psy11677 444 IA 445 (462)
Q Consensus 444 ia 445 (462)
+.
T Consensus 141 ~~ 142 (528)
T 3u4j_A 141 LE 142 (528)
T ss_dssp CC
T ss_pred hc
Confidence 44
|
| >3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A* | Back alignment and structure |
|---|
Probab=88.60 E-value=0.67 Score=48.99 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSD 413 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~ 413 (462)
.++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-+
T Consensus 54 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 101 (505)
T 3prl_A 54 AIQGAKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAK 101 (505)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456788999999999999999999999999999999999999988643
|
| >1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A* | Back alignment and structure |
|---|
Probab=88.54 E-value=0.67 Score=49.03 Aligned_cols=75 Identities=8% Similarity=0.104 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-+. +.++..+ +...-+.++.++..++++.
T Consensus 79 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea~~e-v~~~~~~~~~~a~~~~~~~ 153 (516)
T 1uzb_A 79 ALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKN----WVEASAD-VAEAIDFIEYYARAALRYR 153 (516)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHHHHH-HHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 3457888999999999999999999999999999999999998886322 2233322 3334455555665555544
|
| >1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ... | Back alignment and structure |
|---|
Probab=88.27 E-value=0.29 Score=51.70 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=52.8
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSR---VLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLK 442 (462)
Q Consensus 366 ~~~~Ar~As~---~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~ 442 (462)
.++.|++|.. ..+.++.++|.++|+++|+.|++++++|.+++.+|.-+. +.+++...+...-+.++.++..++
T Consensus 62 av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea~~~ev~~~~~~~~~~a~~~~ 137 (500)
T 1o04_A 62 AVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKP----YVISYLVDLDMVLKCLRYYAGWAD 137 (500)
T ss_dssp HHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHHHHTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888 899999999999999999999999999999998886321 122333334444445555555444
Q ss_pred H
Q psy11677 443 Q 443 (462)
Q Consensus 443 ~ 443 (462)
+
T Consensus 138 ~ 138 (500)
T 1o04_A 138 K 138 (500)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.12 E-value=0.74 Score=48.20 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|.+..+.++.++|.++|+++++.|++++++|.+++.+|.-+.. .++ ...+..+++.++..+
T Consensus 52 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~----~~a--------~~ev~~~~~~~~~~a 119 (481)
T 3jz4_A 52 AIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPL----AEA--------KGEISYAASFIEWFA 119 (481)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH----HHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH----HHH--------HHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999998888754321 111 135666777777777
Q ss_pred hCCCCCccc
Q psy11677 446 ESSHTNVGK 454 (462)
Q Consensus 446 ~l~dDPvg~ 454 (462)
...+++.|+
T Consensus 120 ~~~~~~~~~ 128 (481)
T 3jz4_A 120 EEGKRIYGD 128 (481)
T ss_dssp HHGGGCCEE
T ss_pred HHHHHhcCc
Confidence 653234443
|
| >1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A* | Back alignment and structure |
|---|
Probab=88.12 E-value=0.74 Score=48.11 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
..+.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-+. +.++ ...+..+++.++..+
T Consensus 45 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea--------~~ev~~~~~~~~~~a 112 (475)
T 1euh_A 45 VYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKG----YKSA--------VSEVVRTAEIINYAA 112 (475)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCC----HHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHH--------HHHHHHHHHHHHHHH
Confidence 4557888889999999999999999999999999999999988886321 1111 246788888888888
Q ss_pred hCCCCCcccc
Q psy11677 446 ESSHTNVGKF 455 (462)
Q Consensus 446 ~l~dDPvg~v 455 (462)
+..+...|+.
T Consensus 113 ~~~~~~~~~~ 122 (475)
T 1euh_A 113 EEGLRMEGEV 122 (475)
T ss_dssp HHHTTCCEEE
T ss_pred HHHHHhcCCc
Confidence 7552334553
|
| >3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A | Back alignment and structure |
|---|
Probab=88.07 E-value=0.77 Score=47.72 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
.++.|++|.+..+.++.++|.++|+++++.|++++++|.++..+|.
T Consensus 34 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 79 (462)
T 3etf_A 34 ALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREM 79 (462)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999988875
|
| >1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.06 E-value=0.75 Score=48.26 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-+. +.++. ..+...++.++..+
T Consensus 48 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~~a~--------~ev~~~~~~~~~~a 115 (486)
T 1t90_A 48 AAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKN----TKEAL--------GEVGRGIENVEFAA 115 (486)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCC----HHHHH--------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHH--------HHHHHHHHHHHHHH
Confidence 4557888999999999999999999999999999999999998886321 11111 24666667777655
Q ss_pred hCC
Q psy11677 446 ESS 448 (462)
Q Consensus 446 ~l~ 448 (462)
.+.
T Consensus 116 ~~~ 118 (486)
T 1t90_A 116 GAP 118 (486)
T ss_dssp THH
T ss_pred HHH
Confidence 443
|
| >4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.96 E-value=0.72 Score=48.98 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|....+.++.++|.++|+++|+.|++++++|.+++.+|.-+.. .++. ..+...++.++..+
T Consensus 69 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~ea~--------~Ev~~~~~~l~~~a 136 (521)
T 4e4g_A 69 AVESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTI----DDAK--------GDIVRGLEVCEFVI 136 (521)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCH----HHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHH--------HHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999988864221 1121 24777778888777
Q ss_pred hCC
Q psy11677 446 ESS 448 (462)
Q Consensus 446 ~l~ 448 (462)
.+.
T Consensus 137 ~~~ 139 (521)
T 4e4g_A 137 GIP 139 (521)
T ss_dssp THH
T ss_pred HHH
Confidence 655
|
| >2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.73 E-value=0.8 Score=48.49 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|....+.++.++|.++|+++++.|++++++|.+++.+|.-+. +.++. ..+..+++.++..+
T Consensus 69 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea~--------~ev~~~~~~l~~~a 136 (515)
T 2d4e_A 69 AAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQV----LRIVR--------AQVARAAENFAFYA 136 (515)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHH--------HHHHHHHHHHHHHH
Confidence 3457888989999999999999999999999999999999988886221 11122 24777888899888
Q ss_pred hCC
Q psy11677 446 ESS 448 (462)
Q Consensus 446 ~l~ 448 (462)
+..
T Consensus 137 ~~~ 139 (515)
T 2d4e_A 137 EYA 139 (515)
T ss_dssp TTG
T ss_pred HHH
Confidence 876
|
| >1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A* | Back alignment and structure |
|---|
Probab=87.49 E-value=0.86 Score=48.08 Aligned_cols=71 Identities=6% Similarity=0.080 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|....+.++.++|.++|+++++.|++++++|.+++.+|. |.+..-- ...+..+++.++..+
T Consensus 63 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~------Gk~~~ea------~~ev~~~~~~~~~~a 130 (503)
T 1a4s_A 63 AVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINN------GKTITEA------EYDIDAAWQCIEYYA 130 (503)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH------CCCHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHH------HHHHHHHHHHHHHHH
Confidence 3457888889999999999999999999999999999999988884 2221111 135778888888888
Q ss_pred hCC
Q psy11677 446 ESS 448 (462)
Q Consensus 446 ~l~ 448 (462)
+..
T Consensus 131 ~~~ 133 (503)
T 1a4s_A 131 GLA 133 (503)
T ss_dssp HHG
T ss_pred HHH
Confidence 766
|
| >1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A* | Back alignment and structure |
|---|
Probab=86.79 E-value=0.86 Score=48.06 Aligned_cols=71 Identities=8% Similarity=0.065 Sum_probs=54.8
Q ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSR-VLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 366 ~~~~Ar~As~-~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
.++.|++|.+ ..+.++.++|.++|+++++.|++++++|.+++.+|.-+ .+.++. ..+..+++.++..
T Consensus 59 av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk----~~~ea~--------~Ev~~~~~~l~~~ 126 (501)
T 1uxt_A 59 TLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGK----PKSAAV--------GEVKAAVDRLRLA 126 (501)
T ss_dssp HHHHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCC----CHHHHH--------HHHHHHHHHHHTG
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC----CHHHHH--------HHHHHHHHHHHHH
Confidence 3456888888 89999999999999999999999999999998888622 111221 1267777888777
Q ss_pred HhCC
Q psy11677 445 AESS 448 (462)
Q Consensus 445 a~l~ 448 (462)
+...
T Consensus 127 a~~~ 130 (501)
T 1uxt_A 127 ELDL 130 (501)
T ss_dssp GGGG
T ss_pred HHHH
Confidence 7666
|
| >3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q | Back alignment and structure |
|---|
Probab=86.73 E-value=1 Score=47.26 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|....+.++.++|.++|+++|+.|++++++|.++..+|.-+- +.++. ..+...++.++..+
T Consensus 55 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~~a~--------~ev~~~~~~l~~~a 122 (484)
T 3ifg_A 55 AIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKP----LAEAK--------GEIAYAASFIEWFA 122 (484)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHH--------HHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999998888775321 11111 45677778888777
Q ss_pred hCC
Q psy11677 446 ESS 448 (462)
Q Consensus 446 ~l~ 448 (462)
...
T Consensus 123 ~~~ 125 (484)
T 3ifg_A 123 EEG 125 (484)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=86.58 E-value=0.79 Score=48.27 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=41.8
Q ss_pred HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 366 FISGTRSGSR--VLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 366 ~~~~Ar~As~--~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
.++.|++|.+ ..+.++.++|.++|+++|+.|++++++|.+++.+|.
T Consensus 51 av~~A~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 98 (495)
T 3b4w_A 51 AVAAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAET 98 (495)
T ss_dssp HHHHHHHHHHHSSTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3457888888 799999999999999999999999999999998886
|
| >3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei} | Back alignment and structure |
|---|
Probab=86.49 E-value=0.47 Score=50.18 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
.++.|++|.+..+.++.++|.++|+++|+.|++++++|.+++.+|.-
T Consensus 54 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 100 (506)
T 3rh9_A 54 AVEAGQSALRLTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHG 100 (506)
T ss_dssp HHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 45578888888999999999999999999999999999999999864
|
| >4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A | Back alignment and structure |
|---|
Probab=86.17 E-value=1.2 Score=47.76 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-hHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISK-QADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~-~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
.++.|++|....+.++.++|.++|+++|+.|+++ ++++.++...|.- ..+.++..+++...-+.+...+..++++
T Consensus 105 Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~~el~~~~~~e~G----k~~~ea~~e~v~~~~~~~~~~a~~~~~~ 180 (563)
T 4e3x_A 105 AIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQG----KTVIQAEIDAAAELIDFFRFNAKFAVEL 180 (563)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHC----CCHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcC----CCHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4557888889999999999999999999999999 9999999887642 2334455554544556667777777776
Q ss_pred Hh
Q psy11677 445 AE 446 (462)
Q Consensus 445 a~ 446 (462)
..
T Consensus 181 ~~ 182 (563)
T 4e3x_A 181 EG 182 (563)
T ss_dssp TT
T ss_pred hC
Confidence 65
|
| >3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308} | Back alignment and structure |
|---|
Probab=86.02 E-value=1.1 Score=47.25 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQIA 445 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ia 445 (462)
.++.|++|....+.++.++|.++|+++|+.|++++++|.+++..|.-+- +.++. ..+...++.++..+
T Consensus 75 Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea~--------~ev~~~~~~~~~~a 142 (504)
T 3ek1_A 75 AIDASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKP----LAEAR--------GEVLYAASFIEWFA 142 (504)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----HHHHH--------HHHHHHHHHHHHHH
Confidence 4557888999999999999999999999999999999998888875321 11111 24666677777777
Q ss_pred hCC
Q psy11677 446 ESS 448 (462)
Q Consensus 446 ~l~ 448 (462)
.+.
T Consensus 143 ~~~ 145 (504)
T 3ek1_A 143 EEA 145 (504)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=85.81 E-value=1.2 Score=46.92 Aligned_cols=46 Identities=11% Similarity=0.265 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
.++.|++|....+.++.++|.++|+++|+.|++++++|.++...|.
T Consensus 68 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 113 (497)
T 3i44_A 68 AINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEM 113 (497)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888999999999999999999999999999999998888875
|
| >3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A* | Back alignment and structure |
|---|
Probab=85.59 E-value=1.3 Score=46.98 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=56.6
Q ss_pred HHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 367 ISGTRSGS--RVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 367 ~~~Ar~As--~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
.+.|++|. ...+.++.++|.++|+++|+.|++++++|.+++.+|.-+. +.++. .-+...++.++..
T Consensus 76 v~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea~--------~ev~~~~~~~~~~ 143 (520)
T 3ed6_A 76 ILAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKT----LEESY--------ADMDDIHNVFMYF 143 (520)
T ss_dssp HHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC----HHHHH--------HHHHHHHHHHHHH
Confidence 34677777 7789999999999999999999999999998888875321 11121 1377888888888
Q ss_pred HhCCCCCcc
Q psy11677 445 AESSHTNVG 453 (462)
Q Consensus 445 a~l~dDPvg 453 (462)
+... +++.
T Consensus 144 a~~~-~~~~ 151 (520)
T 3ed6_A 144 AGLA-DKDG 151 (520)
T ss_dssp HHHT-TSCC
T ss_pred HHHH-HHhc
Confidence 8877 4543
|
| >2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A* | Back alignment and structure |
|---|
Probab=85.32 E-value=1.3 Score=46.67 Aligned_cols=45 Identities=16% Similarity=0.339 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 367 ISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 367 ~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
.+.|++|....+.++.++|.++|+++|+.|++++++|.++...|.
T Consensus 50 v~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 94 (490)
T 2wme_A 50 VQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDT 94 (490)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 356888999999999999999999999999999999988777664
|
| >4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A* | Back alignment and structure |
|---|
Probab=84.96 E-value=1.4 Score=46.39 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..+.|++|....+.++.++|.++|+++|+.|++++++|.++..+|.
T Consensus 67 Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 112 (498)
T 4f3x_A 67 AVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAALEALNC 112 (498)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3457888999999999999999999999999999999998877774
|
| >3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A | Back alignment and structure |
|---|
Probab=84.09 E-value=1.5 Score=46.68 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
.++.|++|....+.++.++|.++|+++|+.|++++++|.++..+|.
T Consensus 79 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 124 (538)
T 3qan_A 79 AIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEA 124 (538)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457889999999999999999999999999999999998887774
|
| >3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A* | Back alignment and structure |
|---|
Probab=83.97 E-value=1.4 Score=46.18 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLS 412 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~ 412 (462)
.++.|++|....+.++.++|.++|+++++.|++++++|.++..+|.-
T Consensus 39 av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 85 (486)
T 3pqa_A 39 AIDTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAG 85 (486)
T ss_dssp HHHHHHHTHHHHHTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45678888899999999999999999999999999999988887753
|
| >4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=83.79 E-value=1.3 Score=46.19 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
..+.|++|.+..+.++.++|.++|+++|+.|++++++|.++...|.
T Consensus 33 av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 78 (474)
T 4h7n_A 33 QCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEALVNDT 78 (474)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3457899999999999999999999999999999999987776663
|
| >2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A* | Back alignment and structure |
|---|
Probab=82.82 E-value=1.7 Score=45.99 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=52.8
Q ss_pred HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHH
Q psy11677 366 FISGTRSGSR--VLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQ 443 (462)
Q Consensus 366 ~~~~Ar~As~--~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~ 443 (462)
.++.|++|.. ..+.++.++|.++|+++|+.|++++++|.++..+|.-+- +.++.. ..+...++.++.
T Consensus 79 av~aA~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~----~~ea~~-------~Ev~~~~~~~~~ 147 (517)
T 2o2p_A 79 AVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAV----YTLALK-------THVGMSIQTFRY 147 (517)
T ss_dssp HHHHHHHHHHTSGGGTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC----HHHHHH-------TTTHHHHHHHHH
T ss_pred HHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC----HHHHHH-------HHHHHHHHHHHH
Confidence 3457888888 899999999999999999999999999998888875221 111211 125556667776
Q ss_pred HHhCC
Q psy11677 444 IAESS 448 (462)
Q Consensus 444 ia~l~ 448 (462)
.+...
T Consensus 148 ~a~~~ 152 (517)
T 2o2p_A 148 FAGWC 152 (517)
T ss_dssp HHHHG
T ss_pred HHHHH
Confidence 66554
|
| >3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A* | Back alignment and structure |
|---|
Probab=82.25 E-value=1.7 Score=45.83 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=40.9
Q ss_pred HHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 366 FISGTRSGSR-----VLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 366 ~~~~Ar~As~-----~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
.++.|++|.. ..+.++.++|.++|+++++.|++++++|.++..+|.
T Consensus 50 av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~ 100 (503)
T 3iwj_A 50 AVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDC 100 (503)
T ss_dssp HHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788877 788999999999999999999999999999988886
|
| >3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=80.64 E-value=2.7 Score=43.53 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
..++.|++|.+..+.++.++|.++|+++|+.|+++++++.+.-.+|
T Consensus 11 ~av~~A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e 56 (452)
T 3my7_A 11 AMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEE 56 (452)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999987665444
|
| >2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A* | Back alignment and structure |
|---|
Probab=80.49 E-value=2.5 Score=44.44 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKD 410 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~D 410 (462)
.++.|++|....+.++.++|.++|+++|+.|++++++|.++-.+|
T Consensus 64 av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e 108 (500)
T 2j6l_A 64 TVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLE 108 (500)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788898999999999999999999999999999996444333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 462 | ||||
| d2akoa1 | 250 | c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobact | 2e-14 | |
| d2akoa1 | 250 | c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobact | 0.001 | |
| d1vlua_ | 436 | c.82.1.1 (A:) Gamma-glutamyl phosphate reductase { | 5e-14 | |
| d2ij9a1 | 219 | c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog | 5e-13 | |
| d1z9da1 | 238 | c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc | 1e-11 | |
| d1z9da1 | 238 | c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc | 1e-04 | |
| d2a1fa1 | 236 | c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi | 2e-11 | |
| d2a1fa1 | 236 | c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi | 0.001 | |
| d1ybda1 | 236 | c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri | 3e-11 | |
| d1ybda1 | 236 | c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri | 6e-04 | |
| d1o20a_ | 414 | c.82.1.1 (A:) Gamma-glutamyl phosphate reductase { | 7e-11 | |
| d1b7ba_ | 307 | c.73.1.1 (A:) Carbamate kinase {Enterococcus faeci | 2e-10 | |
| d2brxa1 | 225 | c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc | 8e-10 | |
| d2brxa1 | 225 | c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc | 7e-04 | |
| d1gs5a_ | 258 | c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escheri | 1e-09 | |
| d1e19a_ | 313 | c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcu | 4e-09 | |
| d2btya1 | 282 | c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Th | 3e-07 | |
| d2ap9a1 | 291 | c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {My | 6e-07 | |
| d2bufa1 | 300 | c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Ps | 9e-07 | |
| d1bxsa_ | 494 | c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), | 0.002 |
| >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Glutamate 5-kinase species: Campylobacter jejuni [TaxId: 197]
Score = 70.5 bits (171), Expect = 2e-14
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW---EEGAKMIWTYTSEMRDTVQFGQK 88
DNDSL+A ADLL+++SD++G Y K P + T+ E
Sbjct: 139 GDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTG 198
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRK--IGTFF 137
S+ GTGG+ +K+ +A + L+ + + +G K + K GT F
Sbjct: 199 SEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 249
|
| >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Glutamate 5-kinase species: Campylobacter jejuni [TaxId: 197]
Score = 38.1 bits (87), Expect = 0.001
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 160 MEILVNSATWALDRGVSVVICNGMQKEAIKQIVAGRK--IGTFF 201
+ + +A + L+ + + +G K + K GT F
Sbjct: 206 IVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 249
|
| >d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 436 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Gamma-glutamyl phosphate reductase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.4 bits (174), Expect = 5e-14
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
R +L+ ++ E R+ +Y + D L + + +AN DL+ A + G+A LL RL L
Sbjct: 13 RKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLF 72
Query: 431 PS-KLKSLSTGLKQIAESSH 449
K + + G+K +AE
Sbjct: 73 KGDKFEVMLQGIKDVAELED 92
|
| >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 66.0 bits (160), Expect = 5e-13
Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
D+ AA+LA I+AD+ I ++V+G+Y+ P + + + + S + +
Sbjct: 111 FPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRS 170
Query: 89 SKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 135
S + + +A + + G E I + V G +GT
Sbjct: 171 SAKAGTNVVIDLLAAKIIERSKIKTYVILGT-PENIMKAVKGEAVGT 216
|
| >d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Streptococcus pyogenes [TaxId: 1314]
Score = 62.3 bits (150), Expect = 1e-11
Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
+ + A A +L+ + V+G+Y P ++ + + + G+ K G
Sbjct: 140 TDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELT-------HGEVIKRG 192
Query: 93 TGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139
M ++T ++D + +V+ N + I+++V G IGT ++
Sbjct: 193 LKIM--DATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN 237
|
| >d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Streptococcus pyogenes [TaxId: 1314]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 164 VNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 203
++T ++D + +V+ N + I+++V G IGT ++
Sbjct: 198 ATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN 237
|
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Score = 61.9 bits (149), Expect = 2e-11
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
Query: 11 QHFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAK 70
+ + DS A + EI+AD+++ + V+G+Y P +
Sbjct: 118 AIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDA 177
Query: 71 MIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAG 130
++ S + +++ T A D G+ + + N + A++Q+V G
Sbjct: 178 KLYKNLSYAE---------VIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTG 228
Query: 131 RKIGT 135
+ GT
Sbjct: 229 TEEGT 233
|
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Score = 38.0 bits (87), Expect = 0.001
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 166 SATWALDRGVSVVICNGMQKEAIKQIVAGRKIGT 199
+ T A D G+ + + N + A++Q+V G + GT
Sbjct: 200 AFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGT 233
|
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Score = 60.8 bits (146), Expect = 3e-11
Identities = 20/126 (15%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 12 HFLTNFNELFRSIFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKM 71
++ D+ AA+ AE+ D+++ ++V+G+YT P ++ +
Sbjct: 118 IQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSAT 177
Query: 72 IWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGR 131
+ + F + MD+ + +R +++V+ ++ ++K+++ G
Sbjct: 178 RYETIT-------FDEALLKNLKVMDAT--AFALCRERKLNIVVFGIAKEGSLKRVITGE 228
Query: 132 KIGTFF 137
GT
Sbjct: 229 DEGTLV 234
|
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Score = 38.9 bits (89), Expect = 6e-04
Identities = 6/36 (16%), Positives = 19/36 (52%)
Query: 166 SATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
+ +R +++V+ ++ ++K+++ G GT
Sbjct: 199 AFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 234
|
| >d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]} Length = 414 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Gamma-glutamyl phosphate reductase species: Thermotoga maritima [TaxId: 2336]
Score = 61.6 bits (148), Expect = 7e-11
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 371 RSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT 430
R VL+ ++ KAI +A+ L ++ ++L+AN D+ A + GV + L+ RL+L
Sbjct: 11 REAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALN 70
Query: 431 PSKLKSLSTGLKQIAESSH 449
++ + + +
Sbjct: 71 DKRIDEMIKACETVIGLKD 89
|
| >d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Enterococcus faecium [TaxId: 1352]
Score = 59.2 bits (142), Expect = 2e-10
Identities = 18/109 (16%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
++ D D + LA + AD L++++ V+ + + ++ +E+ + + Q
Sbjct: 203 EAVIDKDFASEKLAELVDADALVILTGVDYVCINYGKPDEKQLTNVTVAELEE---YKQA 259
Query: 89 SKVGTGGMDSKVNSATWALDRGV--SVVICNGMQKEAIKQIVAGRKIGT 135
G M K+ +A ++ +I + E + + +GT
Sbjct: 260 GHFAPGSMLPKIEAAIQFVESQPNKQAIITSL---ENLGSMSGDEIVGT 305
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Score = 56.6 bits (135), Expect = 8e-10
Identities = 20/107 (18%), Positives = 45/107 (42%)
Query: 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSK 90
D++AA+LA ++ADLL+++++V+G+YT P ++ G+ +
Sbjct: 117 GHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIE 176
Query: 91 VGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 137
+A G+ ++ + + +++ G GT
Sbjct: 177 KAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 223
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Score = 38.9 bits (89), Expect = 7e-04
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 167 ATWALDRGVSVVICNGMQKEAIKQIVAGRKIGTFF 201
A G+ ++ + + +++ G GT
Sbjct: 189 AKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 223
|
| >d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Escherichia coli [TaxId: 562]
Score = 56.3 bits (134), Expect = 1e-09
Identities = 24/140 (17%), Positives = 38/140 (27%), Gaps = 4/140 (2%)
Query: 1 MFGHTTRLCEQHFLTNFNELFRS--IFQKLISIKDNDSLAAMLAAEIQADLLILMSDVNG 58
GH + L I + D L + A + L +
Sbjct: 118 ELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLI 177
Query: 59 IYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICN 117
+ + K Q + + T GM KVN+A A V I +
Sbjct: 178 LLSDVSGILDGKGQRIAEMTAAKAEQL-IEQGIITDGMIVKVNAALDAARTLGRPVDIAS 236
Query: 118 GMQKEAIKQIVAGRKIGTFF 137
E + + G +GT
Sbjct: 237 WRHAEQLPALFNGMPMGTRI 256
|
| >d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 55.3 bits (132), Expect = 4e-09
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 33 DNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVG 92
D D LA E+ AD+ ++++DVNG E+ + E+R ++ ++
Sbjct: 213 DKDLAGEKLAEEVNADIFMILTDVNGAALYYGTEKEQWLREVKVEELR---KYYEEGHFK 269
Query: 93 TGGMDSKVNSATWALDRGV-SVVICNGMQKEAIKQIVAGRKIGTFF 137
G M KV +A ++ G +I + E + + G K GT
Sbjct: 270 AGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEG-KTGTQV 311
|
| >d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Thermotoga maritima [TaxId: 2336]
Score = 49.4 bits (117), Expect = 3e-07
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
+ D+ AA +A + A+ LIL++DV+G+ ++ D + +
Sbjct: 176 SYNINADTAAAEIAKSLMAEKLILLTDVDGVLKDGKL---------ISTLTPDEAEELIR 226
Query: 89 SKVGTGGMDSKVNSATWALDRGVS-VVICNGMQKEAI-KQIVAGRKIGTFFTD 139
TGGM KV A A+ GV V I NG + AI +I + + IGT +
Sbjct: 227 DGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKE 279
|
| >d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 48.7 bits (115), Expect = 6e-07
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 38 AAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMD 97
AA +A + A+ L++++D++G+YT+ P + DT Q GM
Sbjct: 194 AAAVAEALGAEKLLMLTDIDGLYTRWPDRDSLVS-------EIDTGTLAQLLPTLELGMV 246
Query: 98 SKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGT 135
KV + A+ GV S I +G + ++ GT
Sbjct: 247 PKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGT 286
|
| >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} Length = 300 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.2 bits (114), Expect = 9e-07
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Query: 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQK 88
+ D +A +A ++A+ L+L++++ G+ K ++ + V
Sbjct: 192 SYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQ-----VLTGL---STEQVNELIA 243
Query: 89 SKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEAI-KQIVAGRKIGTFFTD 139
GGM K+ A A+ GV S I +G A+ +I +GT ++
Sbjct: 244 DGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISN 296
|
| >d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Sheep (Ovis aries) [TaxId: 9940]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Sheep (Ovis aries) [TaxId: 9940]
Score = 37.7 bits (87), Expect = 0.002
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 226 NTTVPKKHAKTSQC-KYFTKMLPRYPLHSQV-----STREEISDLLSMEKHIDLIIPRGS 279
NT V K +T + ++ V +S +D + GS
Sbjct: 181 NTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGS 240
Query: 280 SDLVRSIQQ---KSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSG 323
+++ + I++ KS V G V DAD+ A++ A G
Sbjct: 241 TEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQG 287
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 462 | |||
| d1vlua_ | 436 | Gamma-glutamyl phosphate reductase {Baker's yeast | 100.0 | |
| d2brxa1 | 225 | Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: | 99.89 | |
| d2ij9a1 | 219 | Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax | 99.89 | |
| d2akoa1 | 250 | Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1 | 99.87 | |
| d2a1fa1 | 236 | Uridylate kinase PyrH {Haemophilus influenzae [Tax | 99.86 | |
| d1ybda1 | 236 | Uridylate kinase PyrH {Neisseria meningitidis [Tax | 99.84 | |
| d2ap9a1 | 291 | N-acetyl-l-glutamate kinase {Mycobacterium tubercu | 99.76 | |
| d1e19a_ | 313 | Carbamate kinase {Archaeon Pyrococcus furiosus [Ta | 99.75 | |
| d2btya1 | 282 | N-acetyl-l-glutamate kinase {Thermotoga maritima [ | 99.75 | |
| d1b7ba_ | 307 | Carbamate kinase {Enterococcus faecium [TaxId: 135 | 99.75 | |
| d2bufa1 | 300 | N-acetyl-l-glutamate kinase {Pseudomonas aeruginos | 99.74 | |
| d1z9da1 | 238 | Uridylate kinase PyrH {Streptococcus pyogenes [Tax | 99.73 | |
| d1vlua_ | 436 | Gamma-glutamyl phosphate reductase {Baker's yeast | 99.63 | |
| d1gs5a_ | 258 | N-acetyl-l-glutamate kinase {Escherichia coli [Tax | 99.43 | |
| d2j0wa1 | 292 | Aspartokinase {Escherichia coli [TaxId: 562]} | 99.3 | |
| d2cdqa1 | 304 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 99.29 | |
| d2hmfa1 | 302 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 99.26 | |
| d1o20a_ | 414 | Gamma-glutamyl phosphate reductase {Thermotoga mar | 99.22 | |
| d1euha_ | 474 | Aldehyde reductase (dehydrogenase), ALDH {Streptoc | 99.11 | |
| d1ad3a_ | 446 | Aldehyde reductase (dehydrogenase), ALDH {Rat (Rat | 98.98 | |
| d1a4sa_ | 503 | Aldehyde reductase (dehydrogenase), ALDH {Baltic c | 98.8 | |
| d1bxsa_ | 494 | Aldehyde reductase (dehydrogenase), ALDH {Sheep (O | 98.69 | |
| d1o04a_ | 494 | Aldehyde reductase (dehydrogenase), ALDH {Human (H | 98.53 | |
| d1wnda_ | 474 | Putative betaine aldehyde dehydrogenase YdcW {Esch | 98.51 | |
| d1o20a_ | 414 | Gamma-glutamyl phosphate reductase {Thermotoga mar | 98.5 | |
| d1ky8a_ | 499 | Non-phosphorylating glyceraldehyde-3-phosphate deh | 98.45 | |
| d1uzba_ | 516 | 1-pyrroline-5-carboxylate dehydrogenase {Thermus t | 98.22 | |
| d1ez0a_ | 504 | Aldehyde reductase (dehydrogenase), ALDH {Vibrio h | 97.86 | |
| d1ad3a_ | 446 | Aldehyde reductase (dehydrogenase), ALDH {Rat (Rat | 88.46 | |
| d1euha_ | 474 | Aldehyde reductase (dehydrogenase), ALDH {Streptoc | 86.99 | |
| d1a4sa_ | 503 | Aldehyde reductase (dehydrogenase), ALDH {Baltic c | 82.78 | |
| d1wnda_ | 474 | Putative betaine aldehyde dehydrogenase YdcW {Esch | 81.65 |
| >d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Gamma-glutamyl phosphate reductase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.7e-38 Score=328.11 Aligned_cols=203 Identities=26% Similarity=0.357 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH---------------------HHHHHhhc
Q psy11677 149 VEVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA---------------------IKQIVAGR 195 (462)
Q Consensus 149 ~~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~---------------------~~~~~~~~ 195 (462)
.++++++||+|++.++. +|+.|+++.++|+++|.+|++. |++|++++
T Consensus 5 ~e~~~~~Ak~A~~~l~~~s~~~R~~iL~~~a~~L~~~~~eI~~aN~~Dl~~a~~~g~~~~~idRL~l~~~~ri~~~~~~l 84 (436)
T d1vlua_ 5 SQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVMLQGI 84 (436)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCchHHHHHHHHHH
Confidence 78899999999998766 9999999999999999999864 88999999
Q ss_pred cccccccccCCC-----------------CCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHH
Q psy11677 196 KIGTFFTDASAQ-----------------SGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKY 241 (462)
Q Consensus 196 ~i~t~~a~~~d~-----------------~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~ 241 (462)
+ +|+.++|| ++++|+||||+|||+| ||++++ +++.+|| .+
T Consensus 85 ~---~i~~~~dpvg~~~~~~~~~~gl~~~~~~~P~GVigiI~e~~--P~vt~~~~~lalksGNavIlk~~~~a~~s~-~~ 158 (436)
T d1vlua_ 85 K---DVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESR--PEVIANITALSIKSGNAAILKGGKESVNTF-RE 158 (436)
T ss_dssp H---HHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESSC--THHHHHHHHHHHHHTCEEEEECCGGGHHHH-HH
T ss_pred H---HHHhccccceeEeeeeeccccceEEEeeeeeeeeecccccc--chhhhhhhhcccccCCcceecCCcccccCH-HH
Confidence 9 99999986 3589999999999999 999888 9999999 88
Q ss_pred HH----h----hcCCC----CeEEeecCHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEcc
Q psy11677 242 FT----K----MLPRY----PLHSQVSTREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDK 309 (462)
Q Consensus 242 l~----~----al~~~----~~v~~v~~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~ 309 (462)
|+ + ++.++ ++++++++|+.+.++|.++++||+||||||++||++++++++ +||++|+.|+||+|||+
T Consensus 159 l~~~~~~al~~a~~~aGlP~~~i~~v~~~~~v~~~l~~~~~Id~ii~tGg~~lv~~v~~~~~-~pvi~~~~G~~~~~Vd~ 237 (436)
T d1vlua_ 159 MAKIVNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTK-IPVLGHADGICSIYLDE 237 (436)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTSEEECCCC--CGGGGGCTTTCCEEEEESCHHHHHHHHHTCC-SCBTTBCSCCEEEEECT
T ss_pred HHHHHHHhhhhhccccCCCCceEEEecchhHHHHHhccCCCCceEEEecCCceeeeeecccc-ceEEEecCCccceeecc
Confidence 87 2 23333 889999999999999999999999999999999999999995 99999999999999999
Q ss_pred CCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccccccChhhHHHHHHhH
Q psy11677 310 DADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEMDVSGLPCLLLFIRLG 363 (462)
Q Consensus 310 ~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (462)
+||+++|+++++|||++||++ ||+.+.++.++.|...+..++..+...|
T Consensus 238 ~ADl~~A~~~i~~ak~~~~g~-----C~a~e~llV~e~ia~~~~~~~~~~~~~g 286 (436)
T d1vlua_ 238 DADLIKAKRISLDAKTNYPAG-----CNAMETLLINPKFSKWWEVLENLTLEGG 286 (436)
T ss_dssp TCCHHHHHHHHHHTTCC---------CCCCEEEEECTTSTTHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHhccCCCc-----cccccceeecHhhhhhhhhhHHHHHhCC
Confidence 999999999999999999988 8888887777777555545555554444
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.89 E-value=3e-24 Score=203.45 Aligned_cols=110 Identities=23% Similarity=0.330 Sum_probs=96.6
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHH
Q psy11677 29 ISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWAL 107 (462)
Q Consensus 29 i~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~ 107 (462)
-+|++||++|+++|..++||+|+++||||||||+||+ +|+|++|++++++|+.+++....+..++|||..|+ ||..|.
T Consensus 115 ~~~~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt~dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~~k~-Aa~~a~ 193 (225)
T d2brxa1 115 HPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPL-AAKIIA 193 (225)
T ss_dssp STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHH-HHHHHH
T ss_pred CCCcchhHHHHHHHHHhCchhhhhhhhhhhhhhcccccccccccceEEecchHHHHhccCccccCCCCcccHH-HHHHHH
Confidence 3678899999999999999999999999999999998 89999999999999988887767778999999998 888999
Q ss_pred HcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 108 DRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 108 ~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
++|++++|+||+.|+.|.++++|+.+||+|.|
T Consensus 194 ~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i~P 225 (225)
T d2brxa1 194 RSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP 225 (225)
T ss_dssp HHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred HCCCcEEEEeCCCcchHHHHHCCCCCCcEecC
Confidence 99999999999999999999999999999976
|
| >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.89 E-value=1.5e-23 Score=197.57 Aligned_cols=111 Identities=21% Similarity=0.241 Sum_probs=98.9
Q ss_pred cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHH
Q psy11677 26 QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSAT 104 (462)
Q Consensus 26 ~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~ 104 (462)
..+++|+|||++|+++|..++||+|+++|||||||++||+ +|+|++|++++++|+.++.+ .++..++|||.+|++||+
T Consensus 108 ~~~~~~~stD~laa~vA~~l~Ad~liilTDVDGvYt~dP~~~~~A~~i~~is~~e~~~~~~-~~~~~~~gg~~~k~~Aa~ 186 (219)
T d2ij9a1 108 GGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVS-RSSAKAGTNVVIDLLAAK 186 (219)
T ss_dssp CCCSSSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTC-C-----CCCCCSCHHHHH
T ss_pred CCCCCCCcccHHHHHHHHHcCchHhhhccCcccccccccccCcccccccccCHHHHHHHhh-ccCccCCCCCcchHHHHH
Confidence 5778999999999999999999999999999999999998 89999999999999887763 355677899999999999
Q ss_pred HHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 105 WALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 105 ~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.|.++|++++|+||+ +++|.+++.|+.+||+|.
T Consensus 187 ~a~~~gi~~~I~~g~-~~ni~~~l~Ge~vGT~Is 219 (219)
T d2ij9a1 187 IIERSKIKTYVILGT-PENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp HHHHHTCCEEEEECC-HHHHHHHHTTCCCSEEEC
T ss_pred HHHHcCCcEEEecCC-CcHHHHHHCCCCCceEeC
Confidence 999999999999996 778999999999999984
|
| >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Glutamate 5-kinase species: Campylobacter jejuni [TaxId: 197]
Probab=99.87 E-value=6e-23 Score=197.01 Aligned_cols=129 Identities=27% Similarity=0.390 Sum_probs=100.1
Q ss_pred hhhhHHHhHHHHHHHHh-----------cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCccccccc
Q psy11677 9 CEQHFLTNFNELFRSIF-----------QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYT 76 (462)
Q Consensus 9 ~~~~~~~~~~e~~~~~~-----------~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~ 76 (462)
+...+.+.+.+.++... ..++.++++|++|+++|..++|+.|+++||||||||+||+ +|+|++|++++
T Consensus 105 ~~~~~~~~~~~~l~~~~ipv~~~~~~~~~~~~~~~~~D~~A~~lA~~~~a~~li~~tdVdGVyd~dP~~~~~Ak~i~~It 184 (250)
T d2akoa1 105 ATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKIT 184 (250)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEES
T ss_pred hhhhhhHHHHHHHHhCcccccccCccccccccccccchhhHHHHHHhcccceeeeccCCCceeeCCCcccccccchhhcc
Confidence 33444455555555542 1234568899999999999999999999999999999998 89999999999
Q ss_pred H--HhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCCeEEEEeCCChhHHHHHHc-CC-cccccc
Q psy11677 77 S--EMRDTVQFGQKSKVGTGGMDSKVNSATWALDRGVSVVICNGMQKEAIKQIVA-GR-KIGTFF 137 (462)
Q Consensus 77 ~--~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv~v~I~sG~~~~~L~~~l~-g~-~~GT~I 137 (462)
+ .+..++..+.++.++||||.+|++||..+.++|++|+|+||+.|++|.+++. |+ ..||+|
T Consensus 185 ~~~~~~~~~~~~~~s~~~tGGM~~Kl~aa~~~~~~gi~v~I~nG~~~~~l~~~l~~~~~~~GTv~ 249 (250)
T d2akoa1 185 HIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 249 (250)
T ss_dssp CCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHSCCCCSSEEE
T ss_pred ccchHHhhhhcccCCCCCCCchHHHHHHHHHHHHCCCCEEEecCCCccHHHHHHhCCCCCCceEe
Confidence 7 3444555566777889999999999999999999999999999999998874 44 369998
|
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Probab=99.86 E-value=2.5e-22 Score=189.67 Aligned_cols=103 Identities=23% Similarity=0.260 Sum_probs=90.8
Q ss_pred cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHH
Q psy11677 26 QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSAT 104 (462)
Q Consensus 26 ~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~ 104 (462)
..+++|+|||++|+++|.+++||+|+++||||||||+||+ +|+|++++++++.|..+ .|+|..|++|+.
T Consensus 133 ~~~~~~~dnD~laa~vA~~~~Ad~lii~TDVdGvyt~dP~~~~~A~~i~~i~~~e~l~----------~G~~v~k~~Aa~ 202 (236)
T d2a1fa1 133 GTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVID----------KELKVMDLSAFT 202 (236)
T ss_dssp TTSCSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHH----------TTCCSSCHHHHH
T ss_pred cccCCCCCCcHHHHHHHHHhchhHHHHhhcccccccccccccccccccccccHHHHHh----------cCCceeHHHHHH
Confidence 5678999999999999999999999999999999999998 89999999999887644 377888999999
Q ss_pred HHHHcCCeEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 105 WALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 105 ~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
.|.++|++++|+||++|++|.++++|+.+||+|+
T Consensus 203 ~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI~ 236 (236)
T d2a1fa1 203 LARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 236 (236)
T ss_dssp HHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEEC
T ss_pred HHHHCCCeEEEEeCCCCcHHHHHHcCCCCcceeC
Confidence 9999999999999999999999999999999984
|
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Probab=99.84 E-value=2e-21 Score=182.41 Aligned_cols=104 Identities=21% Similarity=0.293 Sum_probs=95.9
Q ss_pred cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHH
Q psy11677 26 QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSAT 104 (462)
Q Consensus 26 ~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~ 104 (462)
..+++|+|||++|+++|..++||+|+++||||||||+||+ +|++++++.++..|... .++|||.+| |++
T Consensus 132 ~~~~~~gdnD~laa~vA~~~~ad~liilTdVdGvy~~dP~~~~~a~~~~~~~~~e~~~--------~g~~~m~~~--Aa~ 201 (236)
T d1ybda1 132 GTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALL--------KNLKVMDAT--AFA 201 (236)
T ss_dssp TTSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHH--------TTCCSSCHH--HHH
T ss_pred ccccccccchHHHHHHHHHhCccceeeccCccchhhccccccccceeeccccHHHHHh--------cCchHHHHH--HHH
Confidence 5678999999999999999999999999999999999998 89999999999887654 257889655 999
Q ss_pred HHHHcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 105 WALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 105 ~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
.|.++|++++|+||+.|++|.++++|+.+||+|++
T Consensus 202 ~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh~ 236 (236)
T d1ybda1 202 LCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 236 (236)
T ss_dssp HHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred HHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeCC
Confidence 99999999999999999999999999999999974
|
| >d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=9.1e-19 Score=171.24 Aligned_cols=123 Identities=20% Similarity=0.264 Sum_probs=104.3
Q ss_pred hhhHHHhHHHHHHHH-----------hcCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHH
Q psy11677 10 EQHFLTNFNELFRSI-----------FQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSE 78 (462)
Q Consensus 10 ~~~~~~~~~e~~~~~-----------~~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~ 78 (462)
+.-..+.++.+++.+ ..+++.++|||.+|+.+|..++||+|||+|||||||+++|.. .++++.++..
T Consensus 155 ~~v~~~~I~~ll~~g~ipvi~~~~~~~~g~~~n~d~D~lAa~lA~~l~AdkLI~LTdv~Gv~~~~~~~--~~~~~~~~~~ 232 (291)
T d2ap9a1 155 DQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDR--DSLVSEIDTG 232 (291)
T ss_dssp EEECHHHHHHHHHTTCEEEEESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCT--TCEESEEEHH
T ss_pred ccchHHHHHHHHhcCCCcccCccccCCccccccccHHHHHHHHHHhcCCcEEEEeeccCccccccccc--ccccccCCHH
Confidence 334455677777765 356677899999999999999999999999999999988752 3677888888
Q ss_pred hHHhhhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCcccccccc
Q psy11677 79 MRDTVQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFTD 139 (462)
Q Consensus 79 e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~ 139 (462)
+++++. ..++|||.+|+++|..|++.|+ +|||+||+.++. +.++|+++++||+|..
T Consensus 233 ~~~~~~-----~~~~gGM~~Kl~aA~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~r 290 (291)
T d2ap9a1 233 TLAQLL-----PTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVR 290 (291)
T ss_dssp HHHHHG-----GGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEEC
T ss_pred HHHHHH-----hhhhCchHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCceEEec
Confidence 888775 2478999999999999999999 699999999998 5689999999999975
|
| >d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.75 E-value=1.2e-18 Score=171.89 Aligned_cols=106 Identities=23% Similarity=0.288 Sum_probs=92.4
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHH
Q psy11677 27 KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWA 106 (462)
Q Consensus 27 ~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a 106 (462)
.++.++|||++|+.+|.+++||+|||+|||||||+++| +|++++|++++..++.++.. .+.+++|||.+|+++|..|
T Consensus 207 G~~~ninaD~lAa~vA~~l~Ad~LIlLTdv~Gv~~~~~-~~~~~~i~~l~~~e~~~li~--~g~~~~GGM~~Kv~aA~~a 283 (313)
T d1e19a_ 207 GVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG-TEKEQWLREVKVEELRKYYE--EGHFKAGSMGPKVLAAIRF 283 (313)
T ss_dssp ECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT-STTCEECCEEEHHHHHHHHH--TTCSCTTTHHHHHHHHHHH
T ss_pred ceEEecchhHHHHHHHHHHHHHHHHhccCCcceeccCC-CcccceeeeCCHHHHHHHhh--CCCcccCChHHHHHHHHHH
Confidence 45668899999999999999999999999999998655 46789999999999988763 3457899999999999999
Q ss_pred HHcCC-eEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 107 LDRGV-SVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 107 ~~~Gv-~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
+++|+ +|+|.+ ++.+.++++|+ .||+|.|
T Consensus 284 ~~~Gv~~v~I~~---~~~i~~~l~g~-~GT~i~P 313 (313)
T d1e19a_ 284 IEWGGERAIIAH---LEKAVEALEGK-TGTQVLP 313 (313)
T ss_dssp HHHTCSEEEEEE---GGGHHHHHTTS-SSEEEEC
T ss_pred HHhCCCEEEECC---hHHHHHHHCCC-CCCEEcC
Confidence 99998 788865 56689999996 7999986
|
| >d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=2e-18 Score=168.39 Aligned_cols=119 Identities=29% Similarity=0.372 Sum_probs=103.8
Q ss_pred HHhHHHHHHHH-----------hcCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHh
Q psy11677 14 LTNFNELFRSI-----------FQKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDT 82 (462)
Q Consensus 14 ~~~~~e~~~~~-----------~~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~ 82 (462)
.+.++++++.. ...++.++|+|.+|+.+|..++||+|||+|||||||+ +++++++++..+++.
T Consensus 150 ~~~i~~lL~~~~ipvi~~~~~~~~g~~~nl~~d~~aa~iA~~l~AdkLI~ltdv~Gl~~------d~~~i~~~~~~~~~~ 223 (282)
T d2btya1 150 PEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLK------DGKLISTLTPDEAEE 223 (282)
T ss_dssp THHHHHHHHTTCEEEEESEEECSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEE------TTEECCEECHHHHHH
T ss_pred hHHHHHHHhCCCceeecCcccCCcceeeeccccchhHHHhhhcCCceeEEeccccceec------CccccccCCHHHHHH
Confidence 46677787776 2456778999999999999999999999999999996 368999999999877
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHcCC-eEEEEeCCChhH-HHHHHcCCccccccccCC
Q psy11677 83 VQFGQKSKVGTGGMDSKVNSATWALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 83 l~~~~~s~~gtGGM~~Kl~AA~~a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~~ 141 (462)
+. .+...+|||.+|+++|..|+++|+ +|||+||+.|+. +.++|+++++||+|.+++
T Consensus 224 ~~---~~~~~tgGM~~Kl~aA~~A~~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I~~~e 281 (282)
T d2btya1 224 LI---RDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKELE 281 (282)
T ss_dssp HH---TTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCCC
T ss_pred HH---HcCCcCchHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhCCCCceEEEEeCC
Confidence 65 345679999999999999999999 599999999997 678999999999998765
|
| >d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Enterococcus faecium [TaxId: 1352]
Probab=99.75 E-value=5.6e-19 Score=173.04 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=93.2
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHH
Q psy11677 27 KLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWA 106 (462)
Q Consensus 27 ~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a 106 (462)
.++.++|||++|+.+|..++||+|||+|||||||+++| +|+.+++++++..|+.++.. .+.+++|||.+|++||..|
T Consensus 201 g~~~ninaD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~-~~~~~~i~~l~~~e~~~l~~--~g~~~~GGM~pKl~aA~~a 277 (307)
T d1b7ba_ 201 GVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYG-KPDEKQLTNVTVAELEEYKQ--AGHFAPGSMLPKIEAAIQF 277 (307)
T ss_dssp ECSCCCCHHHHHHHHHHHHTCSEEEEECSSSSCEETTT-STTCEECSEEEHHHHHHHHH--TTCSCTTTHHHHHHHHHHH
T ss_pred CcEEecchhHHHHHHHHHhhhhheeeccccCceeeCCC-cccccccccCCHHHHHHHHH--CCCcccCChHHHHHHHHHH
Confidence 46678999999999999999999999999999999766 46678999999999988763 3457899999999999999
Q ss_pred HHcCC-eEEEEeCCChhHHHHHHcCCcccccc
Q psy11677 107 LDRGV-SVVICNGMQKEAIKQIVAGRKIGTFF 137 (462)
Q Consensus 107 ~~~Gv-~v~I~sG~~~~~L~~~l~g~~~GT~I 137 (462)
+++|+ +++|+++ ++.|.++|+|+++||+|
T Consensus 278 l~~Gv~~~~ii~~--~~~l~~l~~~~~~GT~I 307 (307)
T d1b7ba_ 278 VESQPNKQAIITS--LENLGSMSGDEIVGTVV 307 (307)
T ss_dssp HTTSTTCEEEEEC--HHHHTTCSSCSCEEECC
T ss_pred HHcCCCeEEEECC--HHHHHHHHcCCCCCCCC
Confidence 99999 6777765 45689999999999986
|
| >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.74 E-value=3.1e-18 Score=168.71 Aligned_cols=108 Identities=22% Similarity=0.323 Sum_probs=96.2
Q ss_pred cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHH
Q psy11677 26 QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATW 105 (462)
Q Consensus 26 ~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~ 105 (462)
.+++.+.|+|.+|+.+|..++||+|||+|||+|||+. +++++++++..+++++.. ....+|||.+|+++|..
T Consensus 189 ~G~~~nin~D~~Aa~lA~~L~AdkLI~Ltdv~Gv~~~-----~g~~~~~l~~~~~~~li~---~~~i~gGM~~Kl~aa~~ 260 (300)
T d2bufa1 189 NGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK-----QGQVLTGLSTEQVNELIA---DGTIYGGMLPKIRCALE 260 (300)
T ss_dssp TSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT-----TSCBCCEECHHHHHHHHH---TTCSCTTHHHHHHHHHH
T ss_pred ccchhcccHHHHHHHHHHHcCCCeEEEEcCCCccccC-----CCcchhhccHHHHHHHHH---cCCcCchHHHHHHHHHH
Confidence 4456678999999999999999999999999999975 467899999999988763 34678999999999999
Q ss_pred HHHcCC-eEEEEeCCChhH-HHHHHcCCccccccccCC
Q psy11677 106 ALDRGV-SVVICNGMQKEA-IKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 106 a~~~Gv-~v~I~sG~~~~~-L~~~l~g~~~GT~I~~~~ 141 (462)
|++.|+ +|||+||+.|+. +.++|+++++||+|+.++
T Consensus 261 a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~~~~ 298 (300)
T d2bufa1 261 AVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNRK 298 (300)
T ss_dssp HHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECCC
T ss_pred HHHcCCCEEEEecCCCCCHHHHHHcCCCCceeEEecCC
Confidence 999999 799999999998 678999999999998764
|
| >d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.73 E-value=3.1e-18 Score=159.35 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=92.6
Q ss_pred cCCccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHH
Q psy11677 26 QKLISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSAT 104 (462)
Q Consensus 26 ~~ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~ 104 (462)
..+..++++|.+++++|..++|++++++|||||||++||+ +|++++++.++..+... .|++|| |+.||+
T Consensus 133 ~~~~~~~~~d~~~~~~a~~~~a~~li~~tdVdGvy~~~P~~~~~a~~~~~~~~~~~~~--------~g~~~~--k~~Aa~ 202 (238)
T d1z9da1 133 IGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIK--------RGLKIM--DATAST 202 (238)
T ss_dssp TSCTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHT--------TTCCCS--CHHHHH
T ss_pred eeccCCCCchHHHHHHHHHhhhhhhcccccccceecccccccccchhhccccccchhc--------cCcchh--HHHHHH
Confidence 3455678999999999999999999999999999999998 89999999999876532 234555 899999
Q ss_pred HHHHcCCeEEEEeCCChhHHHHHHcCCcccccccc
Q psy11677 105 WALDRGVSVVICNGMQKEAIKQIVAGRKIGTFFTD 139 (462)
Q Consensus 105 ~a~~~Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~ 139 (462)
.+.++|++|+|+||+.|++|.++++|+.+||+|+.
T Consensus 203 ~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~ 237 (238)
T d1z9da1 203 LSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN 237 (238)
T ss_dssp HHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred HHHHCCCcEEEEeCCCcchHHHHHCCCCCceEecc
Confidence 99999999999999999999999999999999974
|
| >d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Gamma-glutamyl phosphate reductase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=3e-16 Score=162.02 Aligned_cols=94 Identities=29% Similarity=0.450 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCC-HHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLT-PSKLKSLSTGLKQ 443 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~-~~ri~~m~~~l~~ 443 (462)
.++++||.|++.|+.+|.++|+++|.+||+.|++++++|++||++||+.|++.|++++|+|||.|+ .+||++|++++++
T Consensus 7 ~~~~~Ak~A~~~l~~~s~~~R~~iL~~~a~~L~~~~~eI~~aN~~Dl~~a~~~g~~~~~idRL~l~~~~ri~~~~~~l~~ 86 (436)
T d1vlua_ 7 QIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVMLQGIKD 86 (436)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCchHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999995 5799999999999
Q ss_pred HHhCCCCCcccchhcc
Q psy11677 444 IAESSHTNVGKFVKTI 459 (462)
Q Consensus 444 ia~l~dDPvg~v~~~~ 459 (462)
|+.++ ||+|+++..|
T Consensus 87 i~~~~-dpvg~~~~~~ 101 (436)
T d1vlua_ 87 VAELE-DPVGKVKMAR 101 (436)
T ss_dssp HHHSC-CSSSCEEEEE
T ss_pred HHhcc-ccceeEeeee
Confidence 99999 8999998754
|
| >d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.6e-13 Score=127.99 Aligned_cols=102 Identities=30% Similarity=0.290 Sum_probs=85.7
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEEecCcccccCCCCCCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHH
Q psy11677 28 LISIKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPWEEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWAL 107 (462)
Q Consensus 28 ei~~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~ 107 (462)
++...++|.+++.+|..++|+. +++||++|+|..++ ..++.++..+..... .+.++||||.+|+++|..|+
T Consensus 155 ~~~~~~~~~~a~~~a~~l~a~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~tGGM~~Kl~aA~~a~ 225 (258)
T d1gs5a_ 155 QLMNVNADQAATALAATLGADL-ILLSDVSGILDGKG-----QRIAEMTAAKAEQLI---EQGIITDGMIVKVNAALDAA 225 (258)
T ss_dssp CEEECCHHHHHHHHHHHHTCEE-EEEESSSSCBCTTS-----CBCCEECHHHHHHHH---HTTCSCTHHHHHHHHHHHHH
T ss_pred cEEEechhhhhhhHHHHHHhhh-hhhccccccccccc-----ccccccchHHHHHHH---hCCcccchHHHHHHHHHHHH
Confidence 4566899999999999999986 46688999997643 455566666665443 24578999999999999999
Q ss_pred HcCC-eEEEEeCCChhHHHHHHcCCccccccc
Q psy11677 108 DRGV-SVVICNGMQKEAIKQIVAGRKIGTFFT 138 (462)
Q Consensus 108 ~~Gv-~v~I~sG~~~~~L~~~l~g~~~GT~I~ 138 (462)
++|+ +|+|+||+.++.|.++|+|++.||+|.
T Consensus 226 ~~Gv~~v~I~~g~~~~~L~~l~~g~~~GT~i~ 257 (258)
T d1gs5a_ 226 RTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred HcCCCEEEEEeCCCchHHHHHhcCCCCceEEe
Confidence 9999 699999999999999999999999986
|
| >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.4e-12 Score=127.36 Aligned_cols=94 Identities=22% Similarity=0.264 Sum_probs=82.1
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|..|+.+|..|+|+.+.++|||||||+.||+ .|+|+.|+++++.|+.+++ .+|..-+++| +...+.+.|
T Consensus 197 gGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP~~v~~A~~i~~lsy~EA~ela-----~~GakVlhp~--ti~p~~~~~ 269 (292)
T d2j0wa1 197 GGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMA-----TFGAKVLHPA--TLLPAVRSD 269 (292)
T ss_dssp THHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHH-----HTTCTTSCTT--THHHHHHHT
T ss_pred CcccHHHHHHHHHhhcHHHHHhccCcceeechhhcCCCceEcceeCHHHHHHHH-----hCCccccCHH--HHHHHHHcC
Confidence 7889999999999999999999999999999998 8999999999999999885 2344446665 777889999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
||++|.|..+|+ ..||+|....
T Consensus 270 Ipi~i~nt~~p~---------~~GT~I~~~~ 291 (292)
T d2j0wa1 270 IPVFVGSSKDPR---------AGGTLVCNKT 291 (292)
T ss_dssp CCEEEEESSCTT---------SCCEEEESCC
T ss_pred CcEEEeeCCCCC---------CCCCeEecCC
Confidence 999999998884 6799998543
|
| >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.29 E-value=2.3e-12 Score=126.73 Aligned_cols=96 Identities=18% Similarity=0.167 Sum_probs=84.8
Q ss_pred ccChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHc
Q psy11677 31 IKDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDR 109 (462)
Q Consensus 31 ~gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~ 109 (462)
-|.+|..|+.+|..|+|+.+.++|||||||+.||+ .|+|+.|++++++|+.+++ .+|..-++++ +...+.+.
T Consensus 206 RgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~v~~a~~i~~lsy~EA~ela-----~~GakvlHp~--ti~p~~~~ 278 (304)
T d2cdqa1 206 RGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELA-----YFGAQVLHPQ--SMRPAREG 278 (304)
T ss_dssp TTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHH-----HHHSSCCCHH--HHHHHHHH
T ss_pred cCccccHHHHHHHHhCchHHHHhcCcchheeccccccCCceEcCccCHHHHHHHH-----hCCCcccCHH--HHHHHHHC
Confidence 37789999999999999999999999999999998 8999999999999998885 3556678887 77788999
Q ss_pred CCeEEEEeCCChhHHHHHHcCCccccccccCCC
Q psy11677 110 GVSVVICNGMQKEAIKQIVAGRKIGTFFTDASA 142 (462)
Q Consensus 110 Gv~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~~ 142 (462)
+||++|.|..+|+ ..||+|..+.+
T Consensus 279 ~Ipi~i~nt~~p~---------~~GT~I~~~~~ 302 (304)
T d2cdqa1 279 EIPVRVKNSYNPK---------APGTIITKTRD 302 (304)
T ss_dssp TCCEEEEETTSTT---------SCCEEEESCCC
T ss_pred CCcEEEecCCCCC---------CCCCEEeCCCC
Confidence 9999999998884 67999986543
|
| >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=99.26 E-value=5.6e-12 Score=123.76 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=82.6
Q ss_pred cChHHHHHHHHHHcCCCeEEEEecCcccccCCCC-CCCCcccccccHHhHHhhhhcCCCCCCCCcchHHHHHHHHHHHcC
Q psy11677 32 KDNDSLAAMLAAEIQADLLILMSDVNGIYTKAPW-EEGAKMIWTYTSEMRDTVQFGQKSKVGTGGMDSKVNSATWALDRG 110 (462)
Q Consensus 32 gdnD~lAa~lA~~l~Ad~LIiLTDVdGVY~~dP~-~p~AklI~~I~~~e~~~l~~~~~s~~gtGGM~~Kl~AA~~a~~~G 110 (462)
|.+|..|+.+|..++|+.+.++|||||||+.||+ .|+++.|+++++.|+.+++ ..|..-|.+| +...+.++|
T Consensus 207 gGSD~tA~~la~~l~A~~~~i~tdv~gi~~~dP~~~~~a~~~~~~~y~ea~eLa-----~~g~~v~h~~--~~~~~~~~~ 279 (302)
T d2hmfa1 207 GGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELA-----YFGAKVLHPR--TIEPAMEKG 279 (302)
T ss_dssp TTHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHH-----HTTCTTSCGG--GHHHHHHTT
T ss_pred cCcccHHHHHHHHhccHHHHHHhccchhccchhhcCCCceEecccCHHHHHHHH-----hCCCcccCHH--HHHHHHHcC
Confidence 7899999999999999999999999999999998 8999999999999998885 2344556775 778899999
Q ss_pred CeEEEEeCCChhHHHHHHcCCccccccccCC
Q psy11677 111 VSVVICNGMQKEAIKQIVAGRKIGTFFTDAS 141 (462)
Q Consensus 111 v~v~I~sG~~~~~L~~~l~g~~~GT~I~~~~ 141 (462)
++++|.|..+| +..||+|..+.
T Consensus 280 i~i~v~~~~~~---------~~~gT~i~~~~ 301 (302)
T d2hmfa1 280 IPILVKNTFEP---------ESEGTLITNDM 301 (302)
T ss_dssp CCEEEEETTST---------TSCCEEEESCC
T ss_pred CCEEEeeCCCC---------CCCCCEEcCCC
Confidence 99999998777 36899998653
|
| >d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Gamma-glutamyl phosphate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=5.5e-12 Score=127.91 Aligned_cols=187 Identities=20% Similarity=0.326 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHhCCchhhcCchhcHHH--------------------HHHHHhhccc
Q psy11677 150 EVLAENVNLKMEILVN------------SATWALDRGVSVVICNGMQKEA--------------------IKQIVAGRKI 197 (462)
Q Consensus 150 ~~ia~~AK~As~~L~~------------iA~aL~~~~~~IL~AN~~D~~~--------------------~~~~~~~~~i 197 (462)
.+.+++||+|.+.+.. +++.|++++++|.+++..|+.+ ++.+++.++
T Consensus 4 ~~a~~~A~~Af~~w~~~s~~eR~~iL~k~a~~l~~~~~eia~~~~~e~gk~~~~~~~e~~~~rl~~~~~~i~~~~~~~~- 82 (414)
T d1o20a_ 4 LEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIKACE- 82 (414)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHhccccHHHHHHHhccHHHHHHHHHHHH-
Confidence 3445566665554333 9999999999999999888764 456777777
Q ss_pred cccccccCCC-----------------CCCCCceeeEEEEeCCCCcccccc-----------------cccccchHHHHH
Q psy11677 198 GTFFTDASAQ-----------------SGGTPVEVLAEIWKNETLNTTVPK-----------------KHAKTSQCKYFT 243 (462)
Q Consensus 198 ~t~~a~~~d~-----------------~~~~PlGVi~~IyEsr~~Pnv~~~-----------------~ea~~sn~~~l~ 243 (462)
..+.++++ +...|+||+++.|... |+.+.. +.+-.|+ ..++
T Consensus 83 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~p~n~p--~~~~~~~~~~alaaGN~vvlKps~~tp~~~-~~~~ 157 (414)
T d1o20a_ 83 --TVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESR--PNVTVETTILALKSGNTILLRGGSDALNSN-KAIV 157 (414)
T ss_dssp --HHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSC--THHHHHHHHHHHHTTCCEEEECCGGGHHHH-HHHH
T ss_pred --HHHHhhhhccccccccccccccceeecccccccccccccCc--HHHhhhccchheecccchhccccccccccc-chhh
Confidence 66665542 1245666666666555 553222 4455555 5555
Q ss_pred ----hhcCCC----CeEEeec--CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCH
Q psy11677 244 ----KMLPRY----PLHSQVS--TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADI 313 (462)
Q Consensus 244 ----~al~~~----~~v~~v~--~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~ 313 (462)
+++... +.++.+. .++...+++..+...++...+||..+.+...++.+ .|++++|.|++++||++|||+
T Consensus 158 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~-~~~le~gGgn~~viv~~dAd~ 236 (414)
T d1o20a_ 158 SAIREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNAT-VPVLETGVGNCHIFVDESADL 236 (414)
T ss_dssp HHHHHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCS-SCBCCCCCCCEEEEECTTSCH
T ss_pred hHHHhhhhhccccccccccccccchhhhhhcccccccCeEEEcccHHHHHHHhhhccc-cceecccCCCCCeecccccch
Confidence 556655 6677776 68999999999999999999999999999999985 999999999999999999999
Q ss_pred HHHHHHHHcccCCCCCCCCchhHHHHHHhhhcccc
Q psy11677 314 RKAIKIARSGSRVLQGLNPEDRAKAIYNLADQGEM 348 (462)
Q Consensus 314 ~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~~~ 348 (462)
++|++.++.++.+.+.. |.+...+..|+.|
T Consensus 237 ~~A~~~~~~~~~~~gq~-----C~a~~r~~V~~~i 266 (414)
T d1o20a_ 237 KKAVPVIINAKTQRPGT-----CNAAEKLLVHEKI 266 (414)
T ss_dssp HHHHHHHHHHHHSCTTS-----TTSEEEEEEEHHH
T ss_pred hhhhhHHHhhhhcCCcc-----cccccccchhHHH
Confidence 99999999999886555 5555555555444
|
| >d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Streptococcus mutans [TaxId: 1309]
Probab=99.11 E-value=3.8e-11 Score=123.34 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=100.5
Q ss_pred CCCceeeEEEEeCCCCcc-cccc-----------------cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhc
Q psy11677 210 GTPVEVLAEIWKNETLNT-TVPK-----------------KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 210 ~~PlGVi~~IyEsr~~Pn-v~~~-----------------~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~ 266 (462)
+.|+||+++|.+.. .|- .... +.+-.+. ..+++.+.++ +++|+|+ +..++.+.|-
T Consensus 140 r~P~GVV~~I~p~n-~P~~~~~~~~~~aL~aGN~vV~Kps~~~~~~~-~~l~~~~~eaglP~gv~~~i~g~~~~~~~~L~ 217 (474)
T d1euha_ 140 REPVGLVLAISPFN-YPVNLAGSKIAPALIAGNVIAFKPPTQGSISG-LLLAEAFAEAGLPAGVFNTITGRGSEIGDYIV 217 (474)
T ss_dssp EEECSEEEEECCTT-STTHHHHHHHHHHHHTTCEEEEECCSTTHHHH-HHHHHHHHHHTCCTTTEEECCCCHHHHHHHHH
T ss_pred eeceeEEEEecccc-ccchhhhhhchhhhhccccceecccccchHHH-HHHHHHHHHhCCCcCeEEEccCChHHHHHHHH
Confidence 68999999998776 232 1111 4444454 5555777665 8999999 4456666666
Q ss_pred CCCCccEEeecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhhcc
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLADQG 346 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~~~ 346 (462)
.+..||+|..+||....+.+.+.+...|++....|+|++||+++||+++|++.++.+|+.+.|- .|.+.+.
T Consensus 218 ~~~~v~~v~ftGs~~~~~~i~~~a~~k~~~~e~gG~~~~iV~~dAdl~~aa~~i~~~~~~~~Gq---------~C~a~~~ 288 (474)
T d1euha_ 218 EHQAVNFINFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQ---------RCTAVKR 288 (474)
T ss_dssp HCTTCCEEEEESCHHHHHHHHHHTTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGC---------CSSSEEE
T ss_pred hCCCccEEEecCccccccchhhhcccceEEEecCCcceEEEECCCchhhHHHHHHHHHhhCCCC---------ccccccc
Confidence 6778999999999999999998876689998888999999999999999999999999998877 5555555
Q ss_pred cc
Q psy11677 347 EM 348 (462)
Q Consensus 347 ~~ 348 (462)
++
T Consensus 289 i~ 290 (474)
T d1euha_ 289 VL 290 (474)
T ss_dssp EE
T ss_pred cc
Confidence 55
|
| >d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=1.5e-10 Score=118.75 Aligned_cols=164 Identities=18% Similarity=0.174 Sum_probs=104.8
Q ss_pred HHHHHHHHHhCCchhhcCchhcHHH---------HHHHHhhcccc-ccccccCC---------------CCCCCCceeeE
Q psy11677 163 LVNSATWALDRGVSVVICNGMQKEA---------IKQIVAGRKIG-TFFTDASA---------------QSGGTPVEVLA 217 (462)
Q Consensus 163 L~~iA~aL~~~~~~IL~AN~~D~~~---------~~~~~~~~~i~-t~~a~~~d---------------~~~~~PlGVi~ 217 (462)
|..+++.|+++.++|.+++..|.-+ +...++.++-. ..+..+.+ ...+.|+|||+
T Consensus 28 L~~~a~~l~~~~~~l~~~~~~e~GK~~~ea~~~ev~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~ 107 (446)
T d1ad3a_ 28 LEALQRMINENLKSISGALASDLGKNEWTSYYEEVAHVLEELDTTIKELPDWAEDEPVAKTRQTQQDDLYIHSEPLGVVL 107 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHSCEECCCCSTTTTSEEEEEEEECSEEE
T ss_pred HHHHHHHHHHCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCcceEEEeecceeEe
Confidence 4448888999988888777766421 12222211100 01111111 01377999999
Q ss_pred EEEeCCCC-cccccc-----------------cccccchHHHHHhhcCCC---CeEEeecC-HHHHHHHhcCCCCccEEe
Q psy11677 218 EIWKNETL-NTTVPK-----------------KHAKTSQCKYFTKMLPRY---PLHSQVST-REEISDLLSMEKHIDLII 275 (462)
Q Consensus 218 ~IyEsr~~-Pnv~~~-----------------~ea~~sn~~~l~~al~~~---~~v~~v~~-r~~~~~ll~~~~~iDliI 275 (462)
+|...- . ...+.. +.+-.+. ..+++.++.. +.++++.. .....+++. ..+|.+.
T Consensus 108 ~I~P~N-~P~~~~~~~~~~ALaaGN~vi~Kps~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~ 183 (446)
T d1ad3a_ 108 VIGAWN-YPFNLTIQPMVGAVAAGNAVILKPSEVSGHMA-DLLATLIPQYMDQNLYLVVKGGVPETTELLK--ERFDHIM 183 (446)
T ss_dssp EECCSS-STTHHHHHHHHHHHHTTCEEEEECCSTTHHHH-HHHHHHHHHHSCTTTEEECCCSHHHHHHHTT--SCCSEEE
T ss_pred cccccc-cccccccccccccchhcccccccccceecccc-ccccccccccccccccccccccchhhhhhcc--cccCceE
Confidence 994322 2 332111 3344555 4444444333 77888874 455555543 4599999
Q ss_pred ecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 276 PRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 276 PrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
..||...-+.|.+.+ +.+||+....|++|+||++|||+++|++.++.+|+.+-|-
T Consensus 184 fTGs~~~G~~i~~~aa~~~~~~~lElgG~np~iV~~dADl~~Aa~~iv~~~~~~~GQ 240 (446)
T d1ad3a_ 184 YTGSTAVGKIVMAAAAKHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMNSGQ 240 (446)
T ss_dssp EESCHHHHHHHHHHHHTTTCCEEEECCCCCEEEECSSSCHHHHHHHHHHHHHTTTTC
T ss_pred EECcHHHHHHHHHHHHhcCCcEEEECCCcCcEEEecCCchHHHHHHHHHHHhcCCCC
Confidence 999977655554432 1589999999999999999999999999999999998886
|
| >d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Baltic cod (Gadus callarias) [TaxId: 8053]
Probab=98.80 E-value=1.1e-09 Score=113.86 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=108.3
Q ss_pred HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccCC---------------CCCCCCceeeEEEEeC
Q psy11677 166 SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDASA---------------QSGGTPVEVLAEIWKN 222 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~d---------------~~~~~PlGVi~~IyEs 222 (462)
+++.|+++.+++.+....|.-+ +...++.++ ..+.+.+ ...+.|+||+++|-..
T Consensus 89 ~a~~L~~~~eela~~~~~etGkp~~ea~~ev~~~~~~l~---~~a~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~ 165 (503)
T d1a4sa_ 89 AARIIRERRDNIAKLEVINNGKTITEAEYDIDAAWQCIE---YYAGLAPTLSGQHIQLPGGAFAYTRREPLGVCAGILAW 165 (503)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHGGGCCEEEEECGGGCEEEEEEEECSEEEEECCS
T ss_pred HHHHHHHhHHHHHHHHHHhhhhcchhhhhhhhhhhhccc---ccccccccccccccccCCCcccccccccceeeecccCC
Confidence 8888888888777665544311 333333333 2222111 1248899999999533
Q ss_pred CCCccc-----------------c-cccccccchHHHHHhhcCCC----CeEEeecCHHHHHHHhcCCCCccEEeecCCh
Q psy11677 223 ETLNTT-----------------V-PKKHAKTSQCKYFTKMLPRY----PLHSQVSTREEISDLLSMEKHIDLIIPRGSS 280 (462)
Q Consensus 223 r~~Pnv-----------------~-~~~ea~~sn~~~l~~al~~~----~~v~~v~~r~~~~~ll~~~~~iDliIPrG~~ 280 (462)
. .|-. . +.+.+-.|+ ..+++.+.++ +++|+|+...++.+.|-.+..||.|...||.
T Consensus 166 N-fP~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~-~~l~~~~~~aglP~gv~~~v~g~~e~g~~L~~~~~v~~V~fTGS~ 243 (503)
T d1a4sa_ 166 N-YPFMIAAWKCAPALACGNAVVFKPSPMTPVTG-VILAEIFHEAGVPVGLVNVVQGGAETGSLLCHHPNVAKVSFTGSV 243 (503)
T ss_dssp S-SHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH-HHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHCTTCCEEEEESCH
T ss_pred C-ChHHHHHHHHHHHHHcCCEEEEECCCCChHHH-HHHHHHHHHhCcCCCeEEEecCCHHHHHHHHhCCCcCEEEEeCCH
Confidence 3 2421 1 116677777 7777666665 8999999534456666666679999999986
Q ss_pred hHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 281 DLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 281 ~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
.--+.|.+.+ +.+|+..-..|+|++||+++||+++|++.++.++..+.|-
T Consensus 244 ~~G~~i~~~aa~~~~~~~lElGG~~p~iV~~dAdl~~a~~~i~~~~~~~~GQ 295 (503)
T d1a4sa_ 244 PTGKKVMEMSAKTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQ 295 (503)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHTTCGGGGC
T ss_pred HHHHHHHHHhhhcCCcEEEECCCcCcEEECCCccHHHHhhhhhcchhccCCC
Confidence 6544443332 1478887777999999999999999999999999887665
|
| >d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Sheep (Ovis aries) [TaxId: 9940]
Probab=98.69 E-value=3.8e-09 Score=109.33 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=98.2
Q ss_pred CCCCceeeEEE--EeCCCCccc----------------ccc-cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHH
Q psy11677 209 GGTPVEVLAEI--WKNETLNTT----------------VPK-KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDL 264 (462)
Q Consensus 209 ~~~PlGVi~~I--yEsr~~Pnv----------------~~~-~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~l 264 (462)
.+.|+||+++| |... ... .+- +.+-.|. ..|++.+.++ +++|+|+ +.+.+.+.
T Consensus 149 ~~~P~GVv~~I~PwN~P--~~~~~~~i~~ALaaGN~VVlKpse~tp~~a-~~l~~~~~~aglP~gv~~~v~g~~~~~~~~ 225 (494)
T d1bxsa_ 149 RSEPVGVCGQIIPWNFP--LLMFLWKIGPALSCGNTVVVKPAEQTPLTA-LHMGSLIKEAGFPPGVVNIVPGYGPTAGAA 225 (494)
T ss_dssp EEEECCEEEEECCSSSH--HHHHHHHHHHHHHTTCEEEEECCTTCCHHH-HHHHHHHHHHTCCTTSEEECCSCTTTHHHH
T ss_pred EEccEEEEEEEeCccch--hHHHHHHHHHHHHcCCeEEEECCCCChHHH-HHHHHHHHHhCCCcCeEEEEeCCchHHHHH
Confidence 47899999999 4322 111 111 5666666 7777666665 8999999 45667777
Q ss_pred hcCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHH
Q psy11677 265 LSMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYN 341 (462)
Q Consensus 265 l~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~ 341 (462)
|-.+..||.|...||...-+.|.+.+ ...||..-..|++++||++|||+++|++.++.++..+.|- .|
T Consensus 226 l~~~p~v~~i~fTGS~~~g~~i~~~aa~~~~~~~~lElGG~np~iV~~dadl~~a~~~i~~~~~~~~GQ---------~C 296 (494)
T d1bxsa_ 226 ISSHMDVDKVAFTGSTEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQ---------CC 296 (494)
T ss_dssp HHTCTTCSEEEEESCHHHHHHHHHHHHHTTCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTTTTC---------CT
T ss_pred HHhCCCcCEEEecCCHHHHHHHHHHhcccCCCeEEEEcCCcCcEEECcCcchhHhHHHHHHHHhcCCCc---------cc
Confidence 76777899999999999999887643 2368988888999999999999999999999999998887 55
Q ss_pred hhhcccc
Q psy11677 342 LADQGEM 348 (462)
Q Consensus 342 ~~~~~~~ 348 (462)
.+.+-++
T Consensus 297 ~a~~rv~ 303 (494)
T d1bxsa_ 297 IAASRLF 303 (494)
T ss_dssp TCCCEEE
T ss_pred ccceEEe
Confidence 5555444
|
| >d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.53 E-value=2.4e-08 Score=103.17 Aligned_cols=120 Identities=19% Similarity=0.169 Sum_probs=90.6
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-. +.. +.+-.|. ..+.+.+.++ +++|+|. +-+++.+.|
T Consensus 149 ~~~P~GVv~~I~P~N-~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~-~~l~~l~~~aglP~gv~~~v~g~~~~~g~~L 226 (494)
T d1o04a_ 149 RHEPVGVCGQIIPWN-FPLLMQAWKLGPALATGNVVVMKVAEQTPLTA-LYVANLIKEAGFPPGVVNIVPGFGPTAGAAI 226 (494)
T ss_dssp EEEECCEEEEECCSS-SHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH-HHHHHHHHHHTCCTTSEEECCBCTTTHHHHH
T ss_pred EEecccEEEEECCcc-cHHHHHHHHHHHHHHcCCeEEEeCCCCCcHHH-HHHHHHHHHhCcCcCeEEEEeCCChHHHHHH
Confidence 478999999993111 1311 111 4555565 6666666654 9999999 445566666
Q ss_pred cCCCCccEEeecCChhHHHHHHhhC---CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKS---QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s---~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|.-.||...-+.|.+.+ ..+||.....|++++||+++||+++|++.++.+|..+.|-
T Consensus 227 ~~~~~v~~v~fTGS~~~g~~i~~~aa~~~~~~~~lElGG~~p~iV~~dAdl~~a~~~i~~~~~~~~GQ 294 (494)
T d1o04a_ 227 ASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQ 294 (494)
T ss_dssp HTCTTCCEEEEESCHHHHHHHHHHHHHTTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGC
T ss_pred hhCCCcCEEEEeCCHHHHHHHHHHhhccCCCeEEEECCCcCcEEEccCccHHHHHHhhhhhccccCcc
Confidence 6677799999999999877775432 2479999889999999999999999999999999998877
|
| >d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Putative betaine aldehyde dehydrogenase YdcW species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=5.5e-08 Score=99.85 Aligned_cols=141 Identities=14% Similarity=0.018 Sum_probs=101.3
Q ss_pred CCCCceeeEEEEeCCCCcc----------------cc-c-ccccccchHHHHHhhcCCC---CeEEeec-CHHHHHHHhc
Q psy11677 209 GGTPVEVLAEIWKNETLNT----------------TV-P-KKHAKTSQCKYFTKMLPRY---PLHSQVS-TREEISDLLS 266 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pn----------------v~-~-~~ea~~sn~~~l~~al~~~---~~v~~v~-~r~~~~~ll~ 266 (462)
.+.|+||+++|-..- .|- |+ + .+.+-.|. ..+++.+.++ +++++|. +.+.+.+.|-
T Consensus 135 ~~~P~GVV~~I~p~N-~P~~~~~~~~a~ALaaGN~Vv~Kps~~~p~~~-~~~~~l~~~~lP~gv~~~v~g~~~~~g~~L~ 212 (474)
T d1wnda_ 135 RRDPLGVVASIAPWN-YPLMMAAWKLAPALAAGNCVVLKPSEITPLTA-LKLAELAKDIFPAGVVNILFGRGKTVGDPLT 212 (474)
T ss_dssp EEEECSEEEEECCSS-SHHHHHHHHHHHHHHTTCEEEEECCTTCCHHH-HHHHHHHTTTSCTTSEEECCCCTTTTHHHHH
T ss_pred EEecccceEEEeecc-hHhhhhhccHHHHHHhCCCEEEeCCCcCcHHH-HHHHHHHHHhCCCCcEEEEeCCcHHHHHHHH
Confidence 377999999994222 131 11 1 15666666 6666666555 9999999 4456666666
Q ss_pred CCCCccEEeecCChhHHHHHHhhC--CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCCCCchhHHHHHHhhh
Q psy11677 267 MEKHIDLIIPRGSSDLVRSIQQKS--QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGLNPEDRAKAIYNLAD 344 (462)
Q Consensus 267 ~~~~iDliIPrG~~~lv~~v~~~s--~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~~~~~~~~~~~~~~~ 344 (462)
.+..||+|.-.||...-+.|.+.+ +.+||+....|+++++|++|||+++|++.++.++..+.|- .|.+.
T Consensus 213 ~~p~i~~v~fTGS~~~G~~i~~~a~~~~k~~~lElgG~~p~iV~~dad~~~a~~~i~~~~~~~~GQ---------~C~a~ 283 (474)
T d1wnda_ 213 GHPKVRMVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQ---------DCTAA 283 (474)
T ss_dssp TCTTEEEEEEESCHHHHHHHHHHHGGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTGGGGC---------STTCC
T ss_pred hCCCcCEEEeeCCHHHHHHHHHhhhcCCCeEEEEcCCCCceEEcCchhhhhhhhhhhhhcccCCCc---------ccccc
Confidence 677799999999887766665532 2589999999999999999999999999999999998887 56665
Q ss_pred cccc--cccChhhHHHHH
Q psy11677 345 QGEM--DVSGLPCLLLFI 360 (462)
Q Consensus 345 ~~~~--~~~~~~~~~~~~ 360 (462)
+-++ .-.+...+..|.
T Consensus 284 ~rv~V~~~i~d~~~~~l~ 301 (474)
T d1wnda_ 284 CRIYAQKGIYDTLVEKLG 301 (474)
T ss_dssp CEEEEETTTHHHHHHHHH
T ss_pred cccccccccchhhhhhhH
Confidence 5555 333444444333
|
| >d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Gamma-glutamyl phosphate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=98.50 E-value=2.9e-07 Score=92.51 Aligned_cols=91 Identities=23% Similarity=0.386 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHHHHHHHCCCChhhhhhcCCCHHHHHHHHHHHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDLSDATKNGVAKPLLSRLSLTPSKLKSLSTGLKQI 444 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl~~a~~~gl~~~l~dRL~L~~~ri~~m~~~l~~i 444 (462)
..+++|++|.+..+.+|.++|.++|+++++.|++++++|.++|.+|+.+.++.++.+.++|||.++.++|+.+++.++..
T Consensus 5 ~a~~~A~~Af~~w~~~s~~eR~~iL~k~a~~l~~~~~eia~~~~~e~gk~~~~~~~e~~~~rl~~~~~~i~~~~~~~~~~ 84 (414)
T d1o20a_ 5 EKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIKACETV 84 (414)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHhccccHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCcccch
Q psy11677 445 AESSHTNVGKFV 456 (462)
Q Consensus 445 a~l~dDPvg~v~ 456 (462)
+.++ ++++...
T Consensus 85 ~~~~-~~~~~~~ 95 (414)
T d1o20a_ 85 IGLK-DPVGEVI 95 (414)
T ss_dssp HHSC-CCTTCEE
T ss_pred HHhh-hhccccc
Confidence 9999 6766544
|
| >d1ky8a_ c.82.1.1 (A:) Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=98.45 E-value=7.8e-08 Score=99.29 Aligned_cols=159 Identities=13% Similarity=0.013 Sum_probs=112.3
Q ss_pred HHHHHHhCCchhhcCchhcHHH--------HHHHHhhccccccccccCC----------C----------CCCCCceeeE
Q psy11677 166 SATWALDRGVSVVICNGMQKEA--------IKQIVAGRKIGTFFTDASA----------Q----------SGGTPVEVLA 217 (462)
Q Consensus 166 iA~aL~~~~~~IL~AN~~D~~~--------~~~~~~~~~i~t~~a~~~d----------~----------~~~~PlGVi~ 217 (462)
+++.|.++.++|.+....|.-+ +...+..++ ..+...+ . ..+.|+||++
T Consensus 84 ~a~~l~~~~~~la~~~~~etGk~~~~a~~Ev~~~i~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~ 160 (499)
T d1ky8a_ 84 AADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDRLR---LAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVA 160 (499)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---GGGGGGTTTCCEEEESTTSSTTTTEEEEEEEEECSEEE
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCHHHHhhhhhccccccc---chhhhhhhhhhceeccccccccccccceeeeecccccc
Confidence 8888888888877776655311 445555444 3222211 0 1379999999
Q ss_pred EEEeCCCCcccccc------------------cccccchHHHHHhhcCCC----CeEEeec-CHHHHHHHhcCCCCccEE
Q psy11677 218 EIWKNETLNTTVPK------------------KHAKTSQCKYFTKMLPRY----PLHSQVS-TREEISDLLSMEKHIDLI 274 (462)
Q Consensus 218 ~IyEsr~~Pnv~~~------------------~ea~~sn~~~l~~al~~~----~~v~~v~-~r~~~~~ll~~~~~iDli 274 (462)
+|...- .|-.+.- ..+..+. ..+.+.+.++ +..+++. +.+....|++.. .||.+
T Consensus 161 ~I~p~N-~P~~~~~~~~~~ALaaGn~Vi~Kps~~~~~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~-~i~~v 237 (499)
T d1ky8a_ 161 AITPFN-YPLFDAVNKITYSFIYGNAVVVKPSISDPLPA-AMAVKALLDAGFPPDAIALLNLPGKEAEKIVADD-RVAAV 237 (499)
T ss_dssp EECCSS-SHHHHHHHHHHHHHHTTCEEEEECCTTSCHHH-HHHHHHHHHHTCCTTSEEECCCCGGGGHHHHHCT-TCCEE
T ss_pred cccccc-ccchhhhhcchhhhcccccccccccccchhhh-hhhccccccccccceeeecccCChHHHHHHhhcc-ceeEE
Confidence 996433 2431111 3444555 5555444333 7777777 677888888655 59999
Q ss_pred eecCChhHHHHHHhhCCCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 275 IPRGSSDLVRSIQQKSQHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 275 IPrG~~~lv~~v~~~s~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
.-.||....+.+.+.+...|++.-..|++++||++|||++.|++.++.+|..+-|-
T Consensus 238 ~ftGs~~~g~~i~~~~~~~~~~lElgG~np~iV~~dAdl~~aa~~i~~~~~~~~GQ 293 (499)
T d1ky8a_ 238 SFTGSTEVGERVVKVGGVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQ 293 (499)
T ss_dssp EEESCHHHHHHHHHHHCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGC
T ss_pred EeecccccceEEeecccccceEEecCCCCeEEEcCCcChhhhhhhhhhhhhccCcc
Confidence 99999999999888765678887777999999999999999999999999998777
|
| >d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: 1-pyrroline-5-carboxylate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=6.3e-07 Score=92.82 Aligned_cols=120 Identities=17% Similarity=0.088 Sum_probs=90.4
Q ss_pred CCCCceeeEEEEeCCCCccc----------------ccc--cccccchHHHHHhhcCCC----CeEEeecC-HHHHHHHh
Q psy11677 209 GGTPVEVLAEIWKNETLNTT----------------VPK--KHAKTSQCKYFTKMLPRY----PLHSQVST-REEISDLL 265 (462)
Q Consensus 209 ~~~PlGVi~~IyEsr~~Pnv----------------~~~--~ea~~sn~~~l~~al~~~----~~v~~v~~-r~~~~~ll 265 (462)
.+.|+||+++|-..- .|-. +.. ..+-.|. ..|.+.+.++ +++|+|.. -+++.+.|
T Consensus 170 ~~~P~Gvv~~I~PwN-~Pl~~~~~~~~~ALaaGN~Vv~Kps~~~p~~~-~~l~~~~~~aglP~gv~~~v~g~~~~~~~~L 247 (516)
T d1uzba_ 170 FYVPLGAGVVIAPWN-FPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVG-AKVFEIFHEAGFPPGVVNFLPGVGEEVGAYL 247 (516)
T ss_dssp EEEECCEEEEECCSS-STTHHHHHHHHHHHHTTCEEEEECCGGGHHHH-HHHHHHHHHHTCCTTSEEECCCSSSHHHHHH
T ss_pred EeeccCccccccccc-cccccccccccchhhhcccccccccchhHHHH-HHHHHHHHHhCcCcCeEEEccCChHHHHHHH
Confidence 378999999995433 2431 111 5555566 6666666665 99999983 33455545
Q ss_pred cCCCCccEEeecCChhHHHHHHhhC--------CCcceeeeccceeEEEEccCCCHHHHHHHHHcccCCCCCC
Q psy11677 266 SMEKHIDLIIPRGSSDLVRSIQQKS--------QHIPVLGHAEGICHVYVDKDADIRKAIKIARSGSRVLQGL 330 (462)
Q Consensus 266 ~~~~~iDliIPrG~~~lv~~v~~~s--------~~iPvi~~~~G~ch~yvd~~ad~~~a~~i~~nak~~~~~~ 330 (462)
-.+..||.|-=.||..--+.+.+.+ +..||.....|+|+++|++|||+++|++.++.+++..-|-
T Consensus 248 ~~hp~v~~I~FTGs~~~G~~i~~~aa~~~~~~~~~k~v~lElgG~~p~iV~~dAd~~~aa~~i~~~~~~~~GQ 320 (516)
T d1uzba_ 248 VEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQ 320 (516)
T ss_dssp HTCTTCCEEEEESCHHHHHHHHHHHTSCCTTCCSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGC
T ss_pred HhCCCcCEEecccchhHHHHHHHHHhhcccchhhhhhheeeccCccceeeecchhHHHHHHHHhhhhcccCCC
Confidence 4566799999999999888887643 2478999999999999999999999999999999876654
|
| >d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Vibrio harveyi [TaxId: 669]
Probab=97.86 E-value=9.5e-06 Score=83.61 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=64.8
Q ss_pred hhcCCC----CeEEeec-CHHHHHHHhcCCCCccEEeecCChhHHHHHHhhC----CCcceeeeccceeEEEEccCCCHH
Q psy11677 244 KMLPRY----PLHSQVS-TREEISDLLSMEKHIDLIIPRGSSDLVRSIQQKS----QHIPVLGHAEGICHVYVDKDADIR 314 (462)
Q Consensus 244 ~al~~~----~~v~~v~-~r~~~~~ll~~~~~iDliIPrG~~~lv~~v~~~s----~~iPvi~~~~G~ch~yvd~~ad~~ 314 (462)
+++.++ +++++|. +-+++.+.|-.+..||.|.=.||..--+.|.+.+ +.+|++....|+++++|++|||++
T Consensus 186 ~a~~~aGlP~Gv~~~v~g~~~~~g~~L~~~p~v~~V~FTGS~~~g~~i~~~aa~~~~~~~l~~ElGGknp~iV~~dAd~~ 265 (504)
T d1ez0a_ 186 QALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGGGRALFNLAHERPEPIPFYGELGAINPTFIFPSAMRA 265 (504)
T ss_dssp HHHHHHTCCGGGEEEECCSCTHHHHHHHHCTTCCEEEEESCHHHHHHHHHHHHHSSSCCCEEEECCCCCEEEECHHHHHH
T ss_pred HHhhhhccccCceecccccccccccccccccccceeeeccchHHHHHHHhhhhcccccccccccccccccccccccccHH
Confidence 666665 8899999 4455655554556699999999777666665443 347777788899999999999999
Q ss_pred HHHH--HHHcccCCCCCC
Q psy11677 315 KAIK--IARSGSRVLQGL 330 (462)
Q Consensus 315 ~a~~--i~~nak~~~~~~ 330 (462)
+|.. .++.+++.+-|-
T Consensus 266 ~Aa~~~~~~~~~~~~~GQ 283 (504)
T d1ez0a_ 266 KADLADQFVASMTMGCGQ 283 (504)
T ss_dssp CTTHHHHHHHHHTGGGGC
T ss_pred HHhhhhccccchhhccCc
Confidence 9853 567778766554
|
| >d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.46 E-value=0.24 Score=48.83 Aligned_cols=47 Identities=13% Similarity=0.066 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 365 LFISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 365 ~~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
...+.||+|....+..|.++|.++|+++++.|++++++|.+++..|.
T Consensus 4 ~av~~Ar~Af~~w~~~s~~~R~~iL~~~a~~l~~~~~~l~~~~~~e~ 50 (446)
T d1ad3a_ 4 DTVKRAREAFNSGKTRSLQFRIQQLEALQRMINENLKSISGALASDL 50 (446)
T ss_dssp HHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHc
Confidence 45678999999999999999999999999999999999999998886
|
| >d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Streptococcus mutans [TaxId: 1309]
Probab=86.99 E-value=0.45 Score=46.71 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 367 ISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 367 ~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
+..|++|.+..+.+|.++|.++|+++++.|.+++++|..++..|.
T Consensus 45 i~~A~~A~~~W~~~s~~~R~~iL~~~a~~L~~~~~~la~~~~~e~ 89 (474)
T d1euha_ 45 YASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEV 89 (474)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 457888999999999999999999999999999999998888774
|
| >d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Baltic cod (Gadus callarias) [TaxId: 8053]
Probab=82.78 E-value=0.92 Score=45.20 Aligned_cols=46 Identities=4% Similarity=0.139 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 366 FISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 366 ~~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
....|++|....+.++.++|.++|+++++.|++++++|.+....|.
T Consensus 63 AV~aA~~A~~~W~~~s~~eR~~iL~~~a~~L~~~~eela~~~~~et 108 (503)
T d1a4sa_ 63 AVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINN 108 (503)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 3456888889999999999999999999999999999987665553
|
| >d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Putative betaine aldehyde dehydrogenase YdcW species: Escherichia coli [TaxId: 562]
Probab=81.65 E-value=1.1 Score=44.11 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhchHHHHHhcHHHH
Q psy11677 367 ISGTRSGSRVLQGLNPEDRAKAIYNLADLLISKQADLLDANSKDL 411 (462)
Q Consensus 367 ~~~Ar~As~~L~~ls~~~rn~aL~~iA~~L~~~~~~Il~AN~~Dl 411 (462)
.+.|++|....+.++.++|.++|+++|+.|+++++++.+....|.
T Consensus 45 v~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~e~ 89 (474)
T d1wnda_ 45 VRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNC 89 (474)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHh
Confidence 456788889999999999999999999999999999987766553
|