Psyllid ID: psy1167

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MASTLGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKRVEEQNVKIKP
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mastlgnmdpasMKIVQDLEIDMMADMFTRLSsachlkcipreyregelnkgeaVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKRVEEQNVKIKP
Flexible Loop (DISEMBL)
mastlgnmdpasMKIVQDLEIDMMADMFTRLSSACHLKCIPREYregelnkgeaVCLDRCVAKYLETHEKigkkltemsvqqdpdflkrveeqnvkikp
Low Complexity Region (SEG)
MASTLGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKRVEEQNVKIKP
Disordered region (IsUnstruct)
**************IVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIG***************************
Disordered Region (DISOPRED)
*******************EIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKI****************************
Disordered Region (DISEMBL)
********DPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKRVEEQNVKIKP
Disordered Region (DISPRO)
******NMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMS********K****Q******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTLGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKRVEEQNVKIKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
P62074	90	Mitochondrial import inne	yes	N/A	0.868	0.955	0.556	2e-24
P62073	90	Mitochondrial import inne	yes	N/A	0.868	0.955	0.556	2e-24
P62072	90	Mitochondrial import inne	yes	N/A	0.868	0.955	0.556	2e-24
Q2NKR1	90	Mitochondrial import inne	yes	N/A	0.868	0.955	0.545	7e-24
Q6DI06	88	Mitochondrial import inne	yes	N/A	0.767	0.863	0.597	3e-23
Q9W2D6	92	Mitochondrial import inne	yes	N/A	0.858	0.923	0.546	3e-23
Q6GQ52	90	Mitochondrial import inne	N/A	N/A	0.848	0.933	0.534	5e-23
Q6P321	90	Mitochondrial import inne	yes	N/A	0.848	0.933	0.523	1e-22
Q4QR62	93	Mitochondrial import inne	N/A	N/A	0.848	0.903	0.516	1e-21
Q9Y0V6	86	Mitochondrial import inne	yes	N/A	0.828	0.953	0.554	2e-21

>sp|P62074|TIM10_RAT Mitochondrial import inner membrane translocase subunit Tim10 OS=Rattus norvegicus GN=Timm10 PE=3 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 73/88 (82%), Gaps = 2/88 (2%)

Query: 8  MDP-ASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
          MDP  + ++  +LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct: 1  MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query: 67 THEKIGKKLTEMSVQQDPDFLKRVEEQN 94
           HE++GKKLTE+S+ QD + +KRV++ +
Sbjct: 61 IHERMGKKLTELSM-QDEELMKRVQQSS 87

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.
Rattus norvegicus (taxid: 10116)

>sp|P62073|TIM10_MOUSE Mitochondrial import inner membrane translocase subunit Tim10 OS=Mus musculus GN=Timm10 PE=1 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 73/88 (82%), Gaps = 2/88 (2%)

Query: 8  MDP-ASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
          MDP  + ++  +LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct: 1  MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query: 67 THEKIGKKLTEMSVQQDPDFLKRVEEQN 94
           HE++GKKLTE+S+ QD + +KRV++ +
Sbjct: 61 IHERMGKKLTELSM-QDEELMKRVQQSS 87

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Mus musculus (taxid: 10090)

>sp|P62072|TIM10_HUMAN Mitochondrial import inner membrane translocase subunit Tim10 OS=Homo sapiens GN=TIMM10 PE=1 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 73/88 (82%), Gaps = 2/88 (2%)

Query: 8  MDP-ASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
          MDP  + ++  +LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct: 1  MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query: 67 THEKIGKKLTEMSVQQDPDFLKRVEEQN 94
           HE++GKKLTE+S+ QD + +KRV++ +
Sbjct: 61 IHERMGKKLTELSM-QDEELMKRVQQSS 87

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Homo sapiens (taxid: 9606)

>sp|Q2NKR1|TIM10_BOVIN Mitochondrial import inner membrane translocase subunit Tim10 OS=Bos taurus GN=TIMM10 PE=3 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 72/88 (81%), Gaps = 2/88 (2%)

Query: 8  MDP-ASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
          MDP  + ++  +LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct: 1  MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query: 67 THEKIGKKLTEMSVQQDPDFLKRVEEQN 94
           HE++GKKLTE+S+ QD + +KR ++ +
Sbjct: 61 IHERMGKKLTELSM-QDEELMKRAQQSS 87

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Bos taurus (taxid: 9913)

>sp|Q6DI06|TIM10_DANRE Mitochondrial import inner membrane translocase subunit Tim10 OS=Danio rerio GN=timm10 PE=3 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 65/77 (84%), Gaps = 1/77 (1%)

Query: 8  MDP-ASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
          MDP  + ++  +LE++MMADM+ R+++ACH KC+P  Y+E EL+KGEAVCLDRCVAKYL+
Sbjct: 1  MDPMKAQQLAAELEVEMMADMYNRMTNACHRKCVPPHYKEAELSKGEAVCLDRCVAKYLD 60

Query: 67 THEKIGKKLTEMSVQQD 83
           HE++G+KLTE+SVQ +
Sbjct: 61 LHERLGRKLTELSVQDE 77

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Danio rerio (taxid: 7955)

>sp|Q9W2D6|TIM10_DROME Mitochondrial import inner membrane translocase subunit Tim10 OS=Drosophila melanogaster GN=Tim10 PE=3 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 5  LGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKY 64
          +   D A ++++Q++EI+MM+D++ R+++ACH KCIP  Y E EL KGE VC+DRCVAKY
Sbjct: 6  ISTADQAKLQLMQEMEIEMMSDLYNRMTNACHKKCIPPRYSESELGKGEMVCIDRCVAKY 65

Query: 65 LETHEKIGKKLTEMSVQQDPDFLKRV 90
          L+ HEKIGKKLT MS+ QD + +K++
Sbjct: 66 LDIHEKIGKKLTAMSM-QDEELMKKM 90

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Drosophila melanogaster (taxid: 7227)

>sp|Q6GQ52|TI10B_XENLA Mitochondrial import inner membrane translocase subunit Tim10-B OS=Xenopus laevis GN=timm10-b PE=3 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 71/86 (82%), Gaps = 2/86 (2%)

Query: 8  MDP-ASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
          MDP  + ++  +LE++MMADM+ R++ ACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct: 1  MDPLKAQQLAAELEVEMMADMYNRMTGACHKKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query: 67 THEKIGKKLTEMSVQQDPDFLKRVEE 92
           HE++GKKLTE+S+ QD + +K++++
Sbjct: 61 IHERMGKKLTELSL-QDEELMKKMQQ 85

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Xenopus laevis (taxid: 8355)

>sp|Q6P321|TIM10_XENTR Mitochondrial import inner membrane translocase subunit Tim10 OS=Xenopus tropicalis GN=timm10 PE=3 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 71/86 (82%), Gaps = 2/86 (2%)

Query: 8  MDP-ASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
          MDP  + ++  +LE++MMADM+ R++ ACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct: 1  MDPLKAQQLAAELEVEMMADMYNRMTGACHKKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query: 67 THEKIGKKLTEMSVQQDPDFLKRVEE 92
           HE++GKKLTE+S+ QD + ++++++
Sbjct: 61 IHERMGKKLTELSL-QDEELMRKMQQ 85

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Xenopus tropicalis (taxid: 8364)

>sp|Q4QR62|TI10A_XENLA Mitochondrial import inner membrane translocase subunit Tim10-A OS=Xenopus laevis GN=timm10-a PE=3 SV=1

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 71/89 (79%), Gaps = 5/89 (5%)

Query: 8  MDPA-SMKIVQDLEIDMMADMFT---RLSSACHLKCIPREYREGELNKGEAVCLDRCVAK 63
          MDP  + ++  +LE++MMADM+    R++ ACH KC+P  Y+E EL+KGE+VCLDRCV+K
Sbjct: 1  MDPVKAQQLAAELEVEMMADMYNSLLRMTGACHKKCVPPHYKEAELSKGESVCLDRCVSK 60

Query: 64 YLETHEKIGKKLTEMSVQQDPDFLKRVEE 92
          YL+ HE++GKKLTE+S+ QD + +K++++
Sbjct: 61 YLDIHERMGKKLTELSL-QDEELMKKMQQ 88

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Xenopus laevis (taxid: 8355)

>sp|Q9Y0V6|TIM10_CAEEL Mitochondrial import inner membrane translocase subunit Tim10 OS=Caenorhabditis elegans GN=tin-10 PE=3 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 1/83 (1%)

Query: 11 ASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEK 70
          A M  V +LE++MM+DM+ R++++C  KCI   +RE EL KGEAVCLDRCVAKYL+ HEK
Sbjct: 5  AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64

Query: 71 IGKKLTEMSVQQDPDFLKRVEEQ 93
          +GK+LT MS Q D   L+++ +Q
Sbjct: 65 LGKRLTSMS-QGDEAALQKIAQQ 86

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
242021215	95	mitochondrial import inner membrane tran	0.939	0.978	0.574	3e-26
321472350	96	hypothetical protein DAPPUDRAFT_301862 [	0.838	0.864	0.626	4e-26
225711616	95	Mitochondrial import inner membrane tran	0.888	0.926	0.629	2e-25
225709892	95	Mitochondrial import inner membrane tran	0.858	0.894	0.639	5e-25
225718282	94	Mitochondrial import inner membrane tran	0.888	0.936	0.629	5e-25
427782529	100	Putative timm10 tim10: mitochondrial imp	0.878	0.87	0.568	9e-25
290561399	93	Mitochondrial import inner membrane tran	0.878	0.935	0.625	3e-24
118091423	90	PREDICTED: mitochondrial import inner me	0.848	0.933	0.593	1e-23
389609247	94	translocase of inner membrane 10 [Papili	0.888	0.936	0.595	1e-23
391340453	100	PREDICTED: mitochondrial import inner me	0.878	0.87	0.545	1e-23

>gi|242021215|ref|XP_002431041.1| mitochondrial import inner membrane translocase subunit Tim10, putative [Pediculus humanus corporis] gi|212516270|gb|EEB18303.1| mitochondrial import inner membrane translocase subunit Tim10, putative [Pediculus humanus corporis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 78/94 (82%), Gaps = 1/94 (1%)

Query: 3  STLGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVA 62
          + L  +D A M++VQ+LEI+MM+DM+ R++SACH KCIP +Y++ EL KGEAVCLDRC+A
Sbjct: 2  AGLPPLDSAKMQLVQELEIEMMSDMYNRMTSACHRKCIPPKYKDAELGKGEAVCLDRCIA 61

Query: 63 KYLETHEKIGKKLTEMSVQQDPDFLKRVEEQNVK 96
          KYL+ HE++GKKLTE+S+Q D DF+K+++ +  K
Sbjct: 62 KYLDIHERVGKKLTELSMQDD-DFVKKLQAEQAK 94

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321472350|gb|EFX83320.1| hypothetical protein DAPPUDRAFT_301862 [Daphnia pulex]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 72/83 (86%)

Query: 1  MASTLGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRC 60
          MA+T+  MD A M++VQDLEI+MM+DM+ R+++ACH KCIP +Y++ EL KGE+VCLDRC
Sbjct: 1  MAATIPQMDAAKMQLVQDLEIEMMSDMYNRMTAACHKKCIPPKYKDAELVKGESVCLDRC 60

Query: 61 VAKYLETHEKIGKKLTEMSVQQD 83
          VAKYL+ HE++G+KLT+MS+Q D
Sbjct: 61 VAKYLDIHERVGRKLTQMSLQDD 83

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225711616|gb|ACO11654.1| Mitochondrial import inner membrane translocase subunit Tim10 [Caligus rogercresseyi]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 69/89 (77%), Gaps = 1/89 (1%)

Query: 2  ASTLGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCV 61
          A  L  ++P  MKIVQ+LEI+MM DM+ RL+ ACH KCIP +YRE EL KGE+VC+DRCV
Sbjct: 3  AQQLPALEPDKMKIVQELEIEMMTDMYARLTKACHKKCIPPKYREAELQKGESVCIDRCV 62

Query: 62 AKYLETHEKIGKKLTEMSVQQDPDFLKRV 90
          AKYLE HE+IGKKLTE+S  +D  F +R 
Sbjct: 63 AKYLEVHERIGKKLTEIST-KDQQFQERA 90

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225709892|gb|ACO10792.1| Mitochondrial import inner membrane translocase subunit Tim10 [Caligus rogercresseyi]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 5  LGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKY 64
          L  ++P  MKIVQ+LEI+MM DM+ RL+ ACH KCIP +YRE EL KGE+VC+DRCVAKY
Sbjct: 6  LPALEPDKMKIVQELEIEMMTDMYARLTKACHKKCIPPKYREAELQKGESVCIDRCVAKY 65

Query: 65 LETHEKIGKKLTEMSVQQDPDFLKRV 90
          LE HE+IGKKLTE+S  +D  F +R 
Sbjct: 66 LEVHERIGKKLTEIST-KDQQFQERA 90

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225718282|gb|ACO14987.1| Mitochondrial import inner membrane translocase subunit Tim10 [Caligus clemensi]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 69/89 (77%), Gaps = 1/89 (1%)

Query: 2  ASTLGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCV 61
          +  L  +D   MKIVQ+LEI+MM DM+ RL+ ACH KCIP +YRE EL KGE+VC+DRCV
Sbjct: 3  SQQLPALDADKMKIVQELEIEMMTDMYARLTKACHKKCIPPKYREAELQKGESVCIDRCV 62

Query: 62 AKYLETHEKIGKKLTEMSVQQDPDFLKRV 90
          AKYLE HE+IGKKLTE+S  +D  F +RV
Sbjct: 63 AKYLEVHERIGKKLTEIST-KDQQFQERV 90

Source: Caligus clemensi

Species: Caligus clemensi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427782529|gb|JAA56716.1| Putative timm10 tim10: mitochondrial import inner membrane translocase subunit tim10 [Rhipicephalus pulchellus]

 Score =  117 bits (293), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 74/88 (84%), Gaps = 1/88 (1%)

Query: 7  NMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
           +DP+ +++V DLEI+MM+DM+ R+++AC  KCIP +YRE +L+KGE+VCLDRCVAKYL+
Sbjct: 6  QLDPSKLQLVADLEIEMMSDMYNRMTAACQKKCIPTKYREADLSKGESVCLDRCVAKYLD 65

Query: 67 THEKIGKKLTEMSVQQDPDFLKRVEEQN 94
           HE+IGKKLT +S+ QD + +K+++EQ 
Sbjct: 66 IHERIGKKLTTLSM-QDEELMKKMQEQQ 92

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290561399|gb|ADD38100.1| Mitochondrial import inner membrane translocase subunit Tim10 [Lepeophtheirus salmonis]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 68/88 (77%), Gaps = 1/88 (1%)

Query: 3  STLGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVA 62
          + L  MD   MK+VQ+LEI+MM DM+ RL+ ACH KCIP +YRE EL KGE+VC+DRCVA
Sbjct: 2  AQLPEMDADKMKLVQELEIEMMTDMYGRLTKACHKKCIPPKYREAELQKGESVCIDRCVA 61

Query: 63 KYLETHEKIGKKLTEMSVQQDPDFLKRV 90
          KYLE HE+IGKKL E+S  +D  F +RV
Sbjct: 62 KYLEVHERIGKKLMEIST-KDQQFQERV 88

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118091423|ref|XP_422986.2| PREDICTED: mitochondrial import inner membrane translocase subunit Tim10 [Gallus gallus]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 72/86 (83%), Gaps = 2/86 (2%)

Query: 8  MDPA-SMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
          MDP  + ++  +LE+DMMADM+ R++ ACHLKC+P  Y+E EL+KGE+VCLDRCVAKYL+
Sbjct: 1  MDPLRAQQLAAELEVDMMADMYNRMTQACHLKCVPPHYKEAELSKGESVCLDRCVAKYLD 60

Query: 67 THEKIGKKLTEMSVQQDPDFLKRVEE 92
           HE++GKKLTE+S+ QD + LKR+++
Sbjct: 61 VHERMGKKLTELSL-QDEELLKRMQQ 85

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|389609247|dbj|BAM18235.1| translocase of inner membrane 10 [Papilio xuthus]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 70/89 (78%), Gaps = 1/89 (1%)

Query: 8  MDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLET 67
          +DPA +++VQ+LEI+MM+DM+ RL +ACH KCIP +Y E EL KGE+VCLDRCVAKYL+ 
Sbjct: 6  LDPAKLQLVQELEIEMMSDMYNRLVTACHRKCIPLKYHEPELGKGESVCLDRCVAKYLDV 65

Query: 68 HEKIGKKLTEMSVQQDPDFLKRVEEQNVK 96
          HE+IGKKL+ MS Q D + L ++  Q  K
Sbjct: 66 HERIGKKLSNMS-QGDSEDLTKINLQETK 93

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391340453|ref|XP_003744555.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim10-like [Metaseiulus occidentalis]

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 72/88 (81%), Gaps = 1/88 (1%)

Query: 7  NMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
           +DP+ + +VQ+LEIDMMADM+ R+++ C  KCIP +YREG+L KGE+VC+DRCVAK+L+
Sbjct: 6  QLDPSKLALVQELEIDMMADMYNRMTNVCQRKCIPTKYREGDLTKGESVCIDRCVAKFLD 65

Query: 67 THEKIGKKLTEMSVQQDPDFLKRVEEQN 94
           HE+IGKKL  +S+ QD + +K++++Q 
Sbjct: 66 IHERIGKKLASISM-QDEEAMKKMQQQQ 92

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
UNIPROTKB|E1BXY8	90	TIMM10 "Uncharacterized protei	0.848	0.933	0.593	6.6e-26
UNIPROTKB|E2R236	90	TIMM10 "Uncharacterized protei	0.868	0.955	0.556	4.6e-25
UNIPROTKB|P62072	90	TIMM10 "Mitochondrial import i	0.868	0.955	0.556	4.6e-25
MGI|MGI:1353429	90	Timm10 "translocase of inner m	0.868	0.955	0.556	4.6e-25
RGD|621741	90	Timm10 "translocase of inner m	0.868	0.955	0.556	4.6e-25
UNIPROTKB|Q2NKR1	90	TIMM10 "Mitochondrial import i	0.868	0.955	0.545	1.2e-24
FB|FBgn0027360	92	Tim10 "Translocase of inner me	0.858	0.923	0.546	8.7e-24
ZFIN|ZDB-GENE-040718-427	88	timm10 "translocase of inner m	0.818	0.920	0.566	8.7e-24
WB|WBGene00006573	86	tin-10 [Caenorhabditis elegans	0.828	0.953	0.554	3.9e-21
UNIPROTKB|F1MIS2	85	F1MIS2 "Uncharacterized protei	0.707	0.823	0.563	9.5e-18

UNIPROTKB|E1BXY8 TIMM10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 51/86 (59%), Positives = 72/86 (83%)

Query:     8 MDPA-SMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
             MDP  + ++  +LE+DMMADM+ R++ ACHLKC+P  Y+E EL+KGE+VCLDRCVAKYL+
Sbjct:     1 MDPLRAQQLAAELEVDMMADMYNRMTQACHLKCVPPHYKEAELSKGESVCLDRCVAKYLD 60

Query:    67 THEKIGKKLTEMSVQQDPDFLKRVEE 92
              HE++GKKLTE+S+Q D + LKR+++
Sbjct:    61 VHERMGKKLTELSLQ-DEELLKRMQQ 85

GO:0046872 "metal ion binding" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0072321 "chaperone-mediated protein transport" evidence=IEA

UNIPROTKB|E2R236 TIMM10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 49/88 (55%), Positives = 73/88 (82%)

Query:     8 MDPA-SMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
             MDP  + ++  +LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct:     1 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query:    67 THEKIGKKLTEMSVQQDPDFLKRVEEQN 94
              HE++GKKLTE+S+Q D + +KRV++ +
Sbjct:    61 IHERMGKKLTELSMQ-DEELMKRVQQSS 87

GO:0072321 "chaperone-mediated protein transport" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|P62072 TIMM10 "Mitochondrial import inner membrane translocase subunit Tim10" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 49/88 (55%), Positives = 73/88 (82%)

Query:     8 MDPA-SMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
             MDP  + ++  +LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct:     1 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query:    67 THEKIGKKLTEMSVQQDPDFLKRVEEQN 94
              HE++GKKLTE+S+Q D + +KRV++ +
Sbjct:    61 IHERMGKKLTELSMQ-DEELMKRVQQSS 87

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0007605 "sensory perception of sound" evidence=TAS

GO:0008270 "zinc ion binding" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA;TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=TAS

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISS;IDA

GO:0005215 "transporter activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0051087 "chaperone binding" evidence=IPI

GO:0072321 "chaperone-mediated protein transport" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:1353429 Timm10 "translocase of inner mitochondrial membrane 10" [Mus musculus (taxid:10090)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 49/88 (55%), Positives = 73/88 (82%)

Query:     8 MDPA-SMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
             MDP  + ++  +LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct:     1 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query:    67 THEKIGKKLTEMSVQQDPDFLKRVEEQN 94
              HE++GKKLTE+S+Q D + +KRV++ +
Sbjct:    61 IHERMGKKLTELSMQ-DEELMKRVQQSS 87

GO:0005215 "transporter activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=ISO;IDA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=ISO

GO:0072321 "chaperone-mediated protein transport" evidence=ISO

RGD|621741 Timm10 "translocase of inner mitochondrial membrane 10 homolog (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 49/88 (55%), Positives = 73/88 (82%)

Query:     8 MDPA-SMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
             MDP  + ++  +LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct:     1 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query:    67 THEKIGKKLTEMSVQQDPDFLKRVEEQN 94
              HE++GKKLTE+S+Q D + +KRV++ +
Sbjct:    61 IHERMGKKLTELSMQ-DEELMKRVQQSS 87

GO:0005215 "transporter activity" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA;ISO

GO:0072321 "chaperone-mediated protein transport" evidence=IEA;ISO

UNIPROTKB|Q2NKR1 TIMM10 "Mitochondrial import inner membrane translocase subunit Tim10" [Bos taurus (taxid:9913)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 48/88 (54%), Positives = 72/88 (81%)

Query:     8 MDPA-SMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
             MDP  + ++  +LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct:     1 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query:    67 THEKIGKKLTEMSVQQDPDFLKRVEEQN 94
              HE++GKKLTE+S+Q D + +KR ++ +
Sbjct:    61 IHERMGKKLTELSMQ-DEELMKRAQQSS 87

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

FB|FBgn0027360 Tim10 "Translocase of inner membrane 10" [Drosophila melanogaster (taxid:7227)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 47/86 (54%), Positives = 68/86 (79%)

Query:     5 LGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKY 64
             +   D A ++++Q++EI+MM+D++ R+++ACH KCIP  Y E EL KGE VC+DRCVAKY
Sbjct:     6 ISTADQAKLQLMQEMEIEMMSDLYNRMTNACHKKCIPPRYSESELGKGEMVCIDRCVAKY 65

Query:    65 LETHEKIGKKLTEMSVQQDPDFLKRV 90
             L+ HEKIGKKLT MS+Q D + +K++
Sbjct:    66 LDIHEKIGKKLTAMSMQ-DEELMKKM 90

GO:0015031 "protein transport" evidence=NAS

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS;NAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS;NAS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

ZFIN|ZDB-GENE-040718-427 timm10 "translocase of inner mitochondrial membrane 10 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 47/83 (56%), Positives = 69/83 (83%)

Query:     8 MDPA-SMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
             MDP  + ++  +LE++MMADM+ R+++ACH KC+P  Y+E EL+KGEAVCLDRCVAKYL+
Sbjct:     1 MDPMKAQQLAAELEVEMMADMYNRMTNACHRKCVPPHYKEAELSKGEAVCLDRCVAKYLD 60

Query:    67 THEKIGKKLTEMSVQQDPDFLKR 89
              HE++G+KLTE+SVQ D + +++
Sbjct:    61 LHERLGRKLTELSVQ-DEEVMRK 82

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00006573 tin-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 46/83 (55%), Positives = 63/83 (75%)

Query:    11 ASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEK 70
             A M  V +LE++MM+DM+ R++++C  KCI   +RE EL KGEAVCLDRCVAKYL+ HEK
Sbjct:     5 AQMAQVAELEVEMMSDMYRRMTNSCQAKCIATAFRESELTKGEAVCLDRCVAKYLDVHEK 64

Query:    71 IGKKLTEMSVQQDPDFLKRVEEQ 93
             +GK+LT MS Q D   L+++ +Q
Sbjct:    65 LGKRLTSMS-QGDEAALQKIAQQ 86

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA;IMP

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

UNIPROTKB|F1MIS2 F1MIS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 40/71 (56%), Positives = 56/71 (78%)

Query:    24 MADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQD 83
             MADM+ R++SA H KC+P  Y+E EL+KGE+VCLD   +KYL+ HE +GKKLTE+S+Q D
Sbjct:    13 MADMYNRMTSAYHRKCMPAHYKEAELSKGESVCLDPYASKYLDIHECMGKKLTELSMQ-D 71

Query:    84 PDFLKRVEEQN 94
              + LKRV++ +
Sbjct:    72 EELLKRVQQSS 82

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4WJX5	TIM10_ASPFU	No assigned EC number	0.4567	0.7979	0.8494	yes	N/A
Q9W2D6	TIM10_DROME	No assigned EC number	0.5465	0.8585	0.9239	yes	N/A
Q759W7	TIM10_ASHGO	No assigned EC number	0.5076	0.6565	0.7303	yes	N/A
Q9Y0V6	TIM10_CAEEL	No assigned EC number	0.5542	0.8282	0.9534	yes	N/A
Q6P321	TIM10_XENTR	No assigned EC number	0.5232	0.8484	0.9333	yes	N/A
Q9Y8A8	TIM10_EMENI	No assigned EC number	0.5689	0.5858	0.6236	yes	N/A
Q4QR62	TI10A_XENLA	No assigned EC number	0.5168	0.8484	0.9032	N/A	N/A
Q9UTE9	TIM10_SCHPO	No assigned EC number	0.3896	0.7575	0.8426	yes	N/A
P87108	TIM10_YEAST	No assigned EC number	0.5	0.6262	0.6666	yes	N/A
Q4IPZ1	TIM10_GIBZE	No assigned EC number	0.4929	0.6969	0.7263	yes	N/A
Q6GQ52	TI10B_XENLA	No assigned EC number	0.5348	0.8484	0.9333	N/A	N/A
Q2NKR1	TIM10_BOVIN	No assigned EC number	0.5454	0.8686	0.9555	yes	N/A
Q6BHJ3	TIM10_DEBHA	No assigned EC number	0.4444	0.7070	0.7692	yes	N/A
P0CR98	TIM10_CRYNJ	No assigned EC number	0.4268	0.7676	0.7450	yes	N/A
Q6CIK7	TIM10_KLULA	No assigned EC number	0.4615	0.6565	0.7303	yes	N/A
Q61BP6	TIM10_CAEBR	No assigned EC number	0.5542	0.8282	0.9534	N/A	N/A
P62073	TIM10_MOUSE	No assigned EC number	0.5568	0.8686	0.9555	yes	N/A
P62072	TIM10_HUMAN	No assigned EC number	0.5568	0.8686	0.9555	yes	N/A
P62074	TIM10_RAT	No assigned EC number	0.5568	0.8686	0.9555	yes	N/A
Q6DI06	TIM10_DANRE	No assigned EC number	0.5974	0.7676	0.8636	yes	N/A
Q54NZ0	TIM10_DICDI	No assigned EC number	0.4347	0.6565	0.7386	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
pfam02953	66	pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc fin	8e-20

>gnl|CDD|202484 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger

 Score = 75.3 bits (186), Expect = 8e-20
 Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 13 MKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIG 72
           +++Q+L+     ++  +L+  C  KC+ + +    L+KGE  CLDRCV KYL+ + ++ 
Sbjct: 2  QQLMQELQKANFQELINKLTENCFKKCVTK-FPGSSLSKGEESCLDRCVEKYLDANNRVS 60

Query: 73 KKLTEM 78
          K+L E 
Sbjct: 61 KRLQER 66

Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein TIMM8A. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import. Members of this family seem to be localised to the mitochondrial intermembrane space. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
KOG3480|consensus	90		99.92
PF02953	66	zf-Tim10_DDP: Tim10/DDP family zinc finger; InterP	99.91
KOG3489|consensus	86		99.88
KOG1733|consensus	97		99.86
KOG3479|consensus	83		99.83
PF05811	131	DUF842: Eukaryotic protein of unknown function (DU	89.25
KOG3377|consensus	143		88.5

>KOG3480|consensus

Probab=99.92  E-value=1e-24  Score=143.13  Aligned_cols=88  Identities=51%  Similarity=0.931  Sum_probs=80.3

Q ss_pred             CCCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1167           1 MASTL-GNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMS   79 (99)
Q Consensus         1 m~~~~-~l~~~~k~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~   79 (99)
                      ||.+. ...+.++.+ ++++|++.+.++||+|+..|++|||+..|..++|+++|.+||||||.||+++|..|+++++.++
T Consensus         1 ~~~~~~q~~~~~k~q-~Ae~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~   79 (90)
T KOG3480|consen    1 MALPQPQTVDQQKAQ-MAELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMG   79 (90)
T ss_pred             CCCCcccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44444 567788888 8999999999999999999999999978999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHH
Q psy1167          80 VQQDPDFLKRV   90 (99)
Q Consensus        80 ~~~~~~~~~~~   90 (99)
                      + +++..++.+
T Consensus        80 ~-~~e~~~k~~   89 (90)
T KOG3480|consen   80 Q-GDEAALKKY   89 (90)
T ss_pred             C-CcHHHHhhc
Confidence            9 999988754

>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.91  E-value=2.9e-24  Score=133.42  Aligned_cols=65  Identities=26%  Similarity=0.721  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1167          13 MKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEM   78 (99)
Q Consensus        13 ~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~   78 (99)
                      .+++++.+++.++++|+++++.||+|||+ +|++++||++|.+||+||++||++++.+|+++|+++
T Consensus         2 ~~~~~~~q~~~~~~~~~~~t~~Cf~kCv~-~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~~   66 (66)
T PF02953_consen    2 QQLMQEQQMKDFQELFNKLTERCFDKCVT-KFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQM   66 (66)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            35788999999999999999999999999 699999999999999999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.

>KOG3489|consensus

Probab=99.88  E-value=4.9e-22  Score=129.92  Aligned_cols=71  Identities=21%  Similarity=0.441  Sum_probs=63.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1167           8 MDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSV   80 (99)
Q Consensus         8 ~~~~k~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~   80 (99)
                      .++....|.++.|...|+++++.+|++||+|||.+  ++++||++|+.|+.|||+||||++.+|.+||+.+..
T Consensus        11 ~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi~~--~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~~   81 (86)
T KOG3489|consen   11 DPELQQFLEAETQKQKFQEQVHQFTEICWDKCIEK--PGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMNQ   81 (86)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44555667888888899999999999999999994  569999999999999999999999999999998754

>KOG1733|consensus

Probab=99.86  E-value=3.3e-21  Score=127.80  Aligned_cols=69  Identities=19%  Similarity=0.502  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1167          10 PASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSV   80 (99)
Q Consensus        10 ~~k~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~   80 (99)
                      +...+|.+++.+++.++|+++|++.||+|||++  |+++|+++|.+||++|++||||+|+.|++.|..+.+
T Consensus        21 ~~m~qVkqqlAvAnAqeLv~kisekCf~KCit~--PGssl~~~e~~Cis~CmdRyMdawniVSrty~sRlQ   89 (97)
T KOG1733|consen   21 ELMNQVKQQLAVANAQELVSKISEKCFDKCITK--PGSSLDSSEKSCISRCMDRYMDAWNIVSRTYISRLQ   89 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999999999999996  999999999999999999999999999999988654

>KOG3479|consensus

Probab=99.83  E-value=1.5e-20  Score=122.45  Aligned_cols=74  Identities=18%  Similarity=0.532  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHhh
Q psy1167          17 QDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKRVEEQ   93 (99)
Q Consensus        17 ~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~~~~~~~~   93 (99)
                      +..+++.|..+||++|+.||.+||+ +|++++|++.|..|+.+|++||+..+++|++||++......++  .++|.+
T Consensus         4 ~~k~lkDFl~~YN~ltE~CF~dCV~-dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~~~~~~--a~~~a~   77 (83)
T KOG3479|consen    4 QIKQLKDFLTLYNKLTELCFSDCVD-DFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQAALNQA--AAAEAA   77 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            4567888999999999999999999 8999999999999999999999999999999999987623333  444444

>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function

Probab=89.25  E-value=3.6  Score=28.54  Aligned_cols=59  Identities=15%  Similarity=0.345  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC----CchhHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy1167          18 DLEIDMMADMFTRLSSACHLKCIPREYREGE----LNKGEAVCLDRCVAKYLETHEKIGKKLTE   77 (99)
Q Consensus        18 ~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~----Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~   77 (99)
                      +-++..|++-+++-+-.|.+|=-+ .++.+.    ....=..|+..||++|+..--.|.+++..
T Consensus        67 q~El~~FQ~rlqrC~~~C~dk~~d-~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~  129 (131)
T PF05811_consen   67 QNELEQFQNRLQRCVMHCQDKAKD-KMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKK  129 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            455777898888888888887544 231111    11222589999999999998888888754

The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.

>KOG3377|consensus

Probab=88.50  E-value=4.4  Score=29.09  Aligned_cols=60  Identities=18%  Similarity=0.313  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCCCC----CCchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1167          18 DLEIDMMADMFTRLSSACHLKCIPREYREG----ELNKGEAVCLDRCVAKYLETHEKIGKKLTEM   78 (99)
Q Consensus        18 ~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~----~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~   78 (99)
                      +-++..|++=.++-+-.|-+|=-. ..+.+    .......+|+.+||++++.+---+.+++-+.
T Consensus        75 ~~El~~FQ~RL~Rc~m~C~Dk~~~-~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~a  138 (143)
T KOG3377|consen   75 QSELGKFQDRLNRCLMVCNDKFEA-SKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKEA  138 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH-hcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            345677888888888888776432 12222    2344567899999999999998888887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
2bsk_B	90	Crystal Structure Of The Tim9 Tim10 Hexameric Compl		1e-21
3dxr_B	95	Crystal Structure Of The Yeast Inter-Membrane Space		3e-15

>pdb|2BSK|B Chain B, Crystal Structure Of The Tim9 Tim10 Hexameric Complex Length = 90

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 12 SMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKI 71
          + ++  +LE++  AD + R +SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+ HE+ 
Sbjct: 6  AQQLAAELEVEXXADXYNRXTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERX 65
Query: 72 GKKLTEMSVQQDPDFLKRVEEQN 94
          GKKLTE+S  QD +  KRV++ +
Sbjct: 66 GKKLTELSX-QDEELXKRVQQSS 87

>pdb|3DXR|B Chain B, Crystal Structure Of The Yeast Inter-Membrane Space Chaperone Assembly Tim9.10 Length = 95

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 45/62 (72%)
Query: 18 DLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTE 77
          + E+D++ DMF +L + C+ KCI   Y EGELNK E+ CLDRCVAKY ET+ ++G+ + +
Sbjct: 25 EAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQK 84
Query: 78 MS 79
          M 
Sbjct: 85 MG 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
2bsk_B	90	Mitochondrial import inner membrane translocase su	1e-27
3dxr_B	95	Mitochondrial import inner membrane translocase su	1e-25
2bsk_A	89	Mitochondrial import inner membrane translocase su	3e-13
3dxr_A	89	Mitochondrial import inner membrane translocase su	2e-12
3cjh_B	64	Mitochondrial import inner membrane translocase S	3e-06

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 90

 Score = 95.5 bits (237), Expect = 1e-27
 Identities = 49/87 (56%), Positives = 70/87 (80%), Gaps = 2/87 (2%)

Query: 8  MDPASMK-IVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLE 66
          MDP   + +  +LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+
Sbjct: 1  MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD 60

Query: 67 THEKIGKKLTEMSVQQDPDFLKRVEEQ 93
           HE++GKKLTE+S  QD + +KRV++ 
Sbjct: 61 IHERMGKKLTELS-MQDEELMKRVQQS 86

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 95

 Score = 90.8 bits (225), Expect = 1e-25
 Identities = 31/82 (37%), Positives = 46/82 (56%)

Query: 1  MASTLGNMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRC 60
                 +         + E+D++ DMF +L + C+ KCI   Y EGELNK E+ CLDRC
Sbjct: 8  FGGGQPQLSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRC 67

Query: 61 VAKYLETHEKIGKKLTEMSVQQ 82
          VAKY ET+ ++G+ + +M    
Sbjct: 68 VAKYFETNVQVGENMQKMGQSF 89

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 89

 Score = 58.9 bits (142), Expect = 3e-13
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 12 SMKIVQDLEIDMMAD---MFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETH 68
          + +I +  +I    +    + +L+  C L C+  ++   E+   E  C + C+ KYL+  
Sbjct: 2  AAQIPESDQIKQFKEFLGTYNKLTETCFLDCVK-DFTTREVKPEETTCSEHCLQKYLKMT 60

Query: 69 EKIGKKLTEMSVQQ 82
          ++I  +  E  +QQ
Sbjct: 61 QRISMRFQEYHIQQ 74

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 89

 Score = 56.5 bits (136), Expect = 2e-12
 Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 13 MKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIG 72
           K+V+  ++     +++ L   C   C+  ++   +L   E  C+ +C  K+L+  E++G
Sbjct: 15 QKVVEQKQMKDFMRLYSNLVERCFTDCVN-DFTTSKLTNKEQTCIMKCSEKFLKHSERVG 73

Query: 73 KKLTEMSVQQ 82
          ++  E +   
Sbjct: 74 QRFQEQNAAL 83

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 40.2 bits (94), Expect = 3e-06
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 23 MMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEM 78
           +     + ++ C  KC+     +  L+  E  CL  CV ++L+T+ +I   L   
Sbjct: 9  KVQMSIHQFTNICFKKCVES-VNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
2bsk_B	90	Mitochondrial import inner membrane translocase su	99.94
3dxr_A	89	Mitochondrial import inner membrane translocase su	99.93
3cjh_B	64	Mitochondrial import inner membrane translocase S	99.93
3dxr_B	95	Mitochondrial import inner membrane translocase su	99.92
2bsk_A	89	Mitochondrial import inner membrane translocase su	99.92
3cjh_A	64	Mitochondrial import inner membrane translocase S	99.85

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.94  E-value=2.3e-27  Score=155.67  Aligned_cols=82  Identities=56%  Similarity=1.066  Sum_probs=62.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH
Q psy1167           8 MDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFL   87 (99)
Q Consensus         8 ~~~~k~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~~   87 (99)
                      +++....++++++++.++++||+||+.||+|||+++|++++|+++|.+||+|||+||+++|.+|+++|++++. ++.+-+
T Consensus         2 ~~e~~~~~~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~-~~~e~~   80 (90)
T 2bsk_B            2 DPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSM-QDEELM   80 (90)
T ss_dssp             -----------CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC---
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            4567778899999999999999999999999996579999999999999999999999999999999999988 666666


Q ss_pred             HHH
Q psy1167          88 KRV   90 (99)
Q Consensus        88 ~~~   90 (99)
                      +++
T Consensus        81 ~~~   83 (90)
T 2bsk_B           81 KRV   83 (90)
T ss_dssp             ---
T ss_pred             Hhc
Confidence            554

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.1e-26  Score=150.12  Aligned_cols=75  Identities=17%  Similarity=0.514  Sum_probs=60.8

Q ss_pred             CCCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1167           5 LGNMDPASMKI---VQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSV   80 (99)
Q Consensus         5 ~~l~~~~k~~l---~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~   80 (99)
                      .+|++.++.++   +++.+++.+..+||+||+.||+|||+ +|++++||++|.+||+|||+||++++.+|+++|++.++
T Consensus         4 ~~l~~~~~~el~~~~~e~q~k~~~~l~~~lte~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~   81 (89)
T 3dxr_A            4 DALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVN-DFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA   81 (89)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888888875   56677778899999999999999999 69999999999999999999999999999999999877

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=7.1e-26  Score=140.16  Aligned_cols=63  Identities=21%  Similarity=0.477  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1167          15 IVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEM   78 (99)
Q Consensus        15 l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~   78 (99)
                      |.+++++++++++||+||+.||+|||+ +||+++||++|.+||+|||+||++++.+|+++|+++
T Consensus         1 i~~E~~~~~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~   63 (64)
T 3cjh_B            1 LEGENSKQKVQMSIHQFTNICFKKCVE-SVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT   63 (64)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHCC-CCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456788999999999999999999998 699999999999999999999999999999999876

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.6e-25  Score=148.70  Aligned_cols=73  Identities=42%  Similarity=0.833  Sum_probs=63.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1167           7 NMDPASMKIVQDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSV   80 (99)
Q Consensus         7 l~~~~k~~l~~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~   80 (99)
                      .+++++-. +++.|+++++++||+||+.||+|||+++|++++|+++|.+||+|||+||+++|++|+++|+++++
T Consensus        15 ~~~~qk~~-~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q   87 (95)
T 3dxr_B           15 LSSQQKIQ-AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQ   87 (95)
T ss_dssp             --CTTTTH-HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444443 78999999999999999999999999669999999999999999999999999999999999876

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.92  E-value=6.5e-25  Score=143.88  Aligned_cols=71  Identities=23%  Similarity=0.580  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHH
Q psy1167          17 QDLEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKR   89 (99)
Q Consensus        17 ~~~q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~~~~   89 (99)
                      +..++++|+++||+||+.||+|||+ +||+++|+++|.+||+|||+||++++.+|+++|+++.+ ++...+++
T Consensus        10 q~~q~~~~~~l~n~lte~Cf~KCv~-~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~-~~~~~~~~   80 (89)
T 2bsk_A           10 QIKQFKEFLGTYNKLTETCFLDCVK-DFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHI-QQNEALAA   80 (89)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHCC-CCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            4556677999999999999999998 79999999999999999999999999999999999998 55555444

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=6.4e-22  Score=122.67  Aligned_cols=55  Identities=22%  Similarity=0.552  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1167          21 IDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSV   80 (99)
Q Consensus        21 ~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~   80 (99)
                      .++++++||+||+.||+|||++  +   ||++|.+||+|||+||++++++|+++|.++.+
T Consensus         2 ~a~~~~l~~~lt~~Cf~kCv~~--~---L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~   56 (64)
T 3cjh_A            2 VANATELVNKISENCFEKCLTS--P---YATRNDACIDQCLAKYMRSWNVISKAYISRIQ   56 (64)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCT--T---CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHHHHHHCCC--c---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999984  3   99999999999999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d2bskb1	65	g.83.1.1 (B:13-77) Mitochondrial import inner memb	1e-23
d2bska1	73	g.83.1.1 (A:13-85) Mitochondrial import inner memb	3e-14

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (207), Expect = 1e-23
 Identities = 42/65 (64%), Positives = 58/65 (89%)

Query: 19 LEIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEM 78
          LE++MMADM+ R++SACH KC+P  Y+E EL+KGE+VCLDRCV+KYL+ HE++GKKLTE+
Sbjct: 1  LEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTEL 60

Query: 79 SVQQD 83
          S+Q +
Sbjct: 61 SMQDE 65

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 3e-14
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 20 EIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMS 79
          +       + +L+  C L C+  ++   E+   E  C + C+ KYL+  ++I  +  E  
Sbjct: 1  QFKEFLGTYNKLTETCFLDCVK-DFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYH 59

Query: 80 VQQD 83
          +QQ+
Sbjct: 60 IQQN 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d2bska1	73	Mitochondrial import inner membrane translocase su	99.92
d2bskb1	65	Mitochondrial import inner membrane translocase su	99.92

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.2e-26  Score=142.26  Aligned_cols=69  Identities=22%  Similarity=0.631  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHH
Q psy1167          20 EIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQDPDFLKR   89 (99)
Q Consensus        20 q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~~~~~~~   89 (99)
                      |++.|..+||+||++||+|||+ +|++++||++|.+||+|||+||++++.+|++||++...+++++-.++
T Consensus         1 Q~kdfl~~yn~lte~Cf~kCv~-~~~~~~L~~~E~~Ci~~Cv~Kf~~~~~~v~~rfqe~q~~~ne~~~~~   69 (73)
T d2bska1           1 QFKEFLGTYNKLTETCFLDCVK-DFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQNEALAAK   69 (73)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCC-CCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3578899999999999999999 79999999999999999999999999999999999988677765543

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-26  Score=141.82  Aligned_cols=63  Identities=67%  Similarity=1.266  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy1167          20 EIDMMADMFTRLSSACHLKCIPREYREGELNKGEAVCLDRCVAKYLETHEKIGKKLTEMSVQQD   83 (99)
Q Consensus        20 q~~~~~~l~~~lt~~CF~KCV~~~~~~~~Ls~~E~~Ci~~Cv~Ky~~t~~~v~~~~~~~~~~~~   83 (99)
                      |++.++++||+||+.||+|||+++|++++|+++|.+||+||++||++++.+|++||+++.+ ++
T Consensus         2 e~~~~~~m~nklt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~C~~ky~d~~~~v~~r~q~~~~-~~   64 (65)
T d2bskb1           2 EVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSM-QD   64 (65)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cC
Confidence            4667899999999999999998678899999999999999999999999999999999987 54