Psyllid ID: psy11686

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------94
Protein Sequence
MEDGVKALSKLRAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGSSTITLDQAIVSKQLSSFKHSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSGYQPRATLQGARLLTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHLGTDETFATLDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGMK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHccccccccEEEEccEEEEccccccccccHHHHHHHccccccHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccEEEccccccccccccHHHHHccccccccEEEEccccEEEcccccccEEEEEEccccccEEEEEEccccHHccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEEEEEEEcccccEEEEEEEEccccccEEEcccccccccccccccEEEEEEcccccccccccEEHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccEEcccccccccEEEcccccEEcccccEEcEEEEcEEEEHHccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEEEcccccccccccccccccccccHHHccccccccccEEEEccccHHHHccccEEEcccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHcccHHHHHHHHHHHHHccccccHHHHHHcccccccccHHHHHHHcccccccccHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHccccccccccEEEEEEEEEEcccEEEEEEEEEccccccccEEEEcccHHccccccccHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHcccccccccccccHHHHHHcccccccEEEEEcccEEEHHHHHHHcccccHHHHHcccccHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHcccccccccEEEEccEEEEccEEEEEEEEccccHHHHHcEcccccEEEEEcccccccEEEEEEccccccccccccHHHHcccccccccEEEEEcccEcHHHHHHHEEEEEccccccccEEEcccccccccccHHHccccccHHHHcccccEEEEccccccEEEccccEEEEEEEEEcccccEEEEEEEEEccccEEEEEEEcccccccccccEEEEEEEEEEccccccccHHHHHHHHHHHEEHHHHHHHcccccccHHHHHHccccccccccEEEEEEEccccccEEEccccccccccccEEccccccEEEEcccccccEEEEEEEEEcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHccccccccEEEEcHHHHHccccccccccccccccccccccccHHHcccccccccEEEEEEEEccEEEEEEEEccccccHcccccccccccccccccccccEEEEEEccccccccccEEEcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHcccHHHHHHHHHcHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHcccccHHHHHHHHHHccccHHHHHHHHHHHHcccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHEEEEEEcccccEEEEEEccccccccccccccHHHHHcccc
Coil and Loop (DISEMBL)
MEDGVKALSKlragepistlpwyslsdiqnhkdlksSIWVVFRQgvyditefvqmhpgGEIIMKaaggsiepfWAMYGVHLQDEVFELLESYrignisqedsklaakdiasdpyvmepvrspllkatslkpynaepppsmlvenfltpsllsqvgsstiTLDQAIVSKQlssfkhsdEKLKLVKVMAGNISQEDSKLAakdiasdpyvmepvrspllkatslkpynaepppsmlyssllripfcshtgkvilsdhestshwqqndykgfspstdwdtvdfakspaiqelpviSAICLPVADAKLKLENHQMEVqgyawsgggkaIVRVDVTIdqgrtwhvanftgqdsqapltrhwgwtlwratipvdpktkevSIMDMlmgkkphdidfatnatpDQMKAMFAEEKVRTFNEKGEKHGTVCArmndkenfevkpvkgltwghaavgnatWTGARLVDVLKaagispdqsldsadvQHVHVEIWSKavdssyntqpesFANIWNLRGVLSNAYHRVRVEIWSKAvdssyntqpenghpsgyqpratlqgarlltrppnphsvrfksgpdgkmkldspefhscftpELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRrekedrigenqpfrkltlsvqdkdrsfrldgtvydyfnghedlkkgvcafvgdpvsrIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHkwrlptfpmngnIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEInmfphlgtdetfatldfeglfrsmpipftlLFSANFFRNLARITTLridvttdgrhaevqftedwkldanrrdltVNSMFLGMK
Flexible Loop (DISEMBL)
MEDGVKALSklragepistlpwyslSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGSSTITLDQAIVSKQLSSFKHSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQgyawsgggkAIVRVDVTIDQGRTWHVanftgqdsqapltrhWGWTLWRatipvdpktKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTfnekgekhgtvcarmndkenFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSGYQPRATLQGARLLTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGyqlriagegtvtakvlsyrnrrekedrigenqpfrkltlsvqdkdrsfrLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHLGTDETFATLDFEGLFRSMPIPFTLLFSANFFRNLARITTLridvttdgrhaevqftedwkldanrrdltvnsmflgmk
Low Complexity Region (SEG)
MEDGVKALSKLRAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGSSTITLDQAIVSKQLSSFKHSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSGYQPRATLQGARLLTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHLGTDETFATLDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGMK
Disordered region (IsUnstruct)
****************ISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNIS*******************************************VENFLTPSLLSQVGSSTITLDQAIV***************LVKV***********************************************MLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLM**************************************TVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAV*****************************************************FHSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSY********************L*V***DRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHLGTDETFATLDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVN*******
Disordered Region (DISOPRED)
**************************DI***KDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYR*******************PYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGSSTITLDQAIVSKQLSSFKHSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSGYQPRATLQGARLLTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHLGTDETFATLDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGMK
Disordered Region (DISEMBL)
MEDGVKALSKLRAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGSSTITLDQAIVSKQLSSFKHSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSGYQPRATLQGARLLTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHLGTDETFATLDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGMK
Disordered Region (DISPRO)
*******************LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQ********DIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGSSTITLDQAIVSKQLSSFKHSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSGYQPRATLQGARLLTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHLGTDETFATLDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGM*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEDGVKALSKLRAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGSSTITLDQAIVSKQLSSFKHSDEKLKLVKVMAGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSGYQPRATLQGARLLTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHLGTDETFATLDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGMK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	939	2.2.26 [Sep-21-2011]
Q9VWP4	573	Probable sulfite oxidase,	yes	N/A	0.400	0.656	0.322	2e-51
P07850	459	Sulfite oxidase OS=Gallus	yes	N/A	0.152	0.311	0.470	2e-32
Q60HD0	545	Sulfite oxidase, mitochon	N/A	N/A	0.154	0.266	0.442	1e-30
Q07116	546	Sulfite oxidase, mitochon	yes	N/A	0.134	0.230	0.476	1e-30
P51687	545	Sulfite oxidase, mitochon	yes	N/A	0.134	0.231	0.492	3e-30
Q8R086	546	Sulfite oxidase, mitochon	yes	N/A	0.134	0.230	0.476	5e-30
Q96Q11	434	CCA tRNA nucleotidyltrans	no	N/A	0.174	0.377	0.395	7e-29
Q8K1J6	434	CCA tRNA nucleotidyltrans	no	N/A	0.173	0.375	0.383	3e-28
Q9S850	393	Sulfite oxidase OS=Arabid	yes	N/A	0.145	0.348	0.311	2e-15
P39866	890	Nitrate reductase [NADH]	N/A	N/A	0.135	0.142	0.275	6e-11

>sp|Q9VWP4|SUOX_DROME Probable sulfite oxidase, mitochondrial OS=Drosophila melanogaster GN=CG7280 PE=2 SV=1

 Score =  204 bits (520), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 222/456 (48%), Gaps = 80/456 (17%)

Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGV 79
           LP Y   +++ H  ++  IWV +  GVYD+T+FV+ HPGG+ I+ AAG +I+PFW +Y  
Sbjct: 108 LPTYRAEEVEQHNSVEKRIWVTYGLGVYDVTDFVENHPGGDKILMAAGSAIDPFWGIYQQ 167

Query: 80  HLQDEVFEL--------LESYRIGNI--------SQEDSKLAAKDIASD-PYVMEPVRSP 122
           H   EV EL        LE   + N+        SQE  + A    AS  P+  EP    
Sbjct: 168 HNTLEVLELLEGFRIGNLEGLVVTNVDDELGSPWSQEPQRHALLKPASKRPFNAEPPIG- 226

Query: 123 LLKATSLKP------YNAEPPPSMLVENFLTPSLLSQVGSSTITLD-------QAIVSKQ 169
           LL      P       N  P P +  E++    +       T+TLD        ++ +  
Sbjct: 227 LLAEQFYTPNELFYVRNHLPVPVINPEDYEL-EIEGGAKDKTLTLDGIKALPKHSVTAAI 285

Query: 170 LSSFKHSDE--KLKLVKVMA------GNISQEDSKLA------------AKDIASDPYVM 209
           +       E  K+K VK ++      GN     ++L              K +  +   +
Sbjct: 286 MCGGNRRSEMTKVKAVKGLSWGAGAVGNAKWSGARLCDILREQGVQPDETKHVIFEGADL 345

Query: 210 EPVRSP----LLKATSLKP---------YNAEP-------PPSMLYSSLLRIPFCSHTGK 249
           +P   P    +  A +L P          N EP       P  ++    +         +
Sbjct: 346 DPTSHPYGASIPLAKALDPRGDVILAYEMNDEPLSRDHGFPIRVIVPGTVGARNVKWLTR 405

Query: 250 VILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENH 309
           ++++D ES SHWQQNDYKGFSPSTDWDTVDF+KS AIQ +PV SAIC P   A++K+++ 
Sbjct: 406 IVVADKESDSHWQQNDYKGFSPSTDWDTVDFSKSDAIQAMPVTSAICTPQPGARVKVDDD 465

Query: 310 Q--MEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPV 367
           +  + V+GYAWSGGG+ IVRVD+T D+G +WHVA    +  + P  RH+GW+LW A +PV
Sbjct: 466 EGHITVRGYAWSGGGRKIVRVDLTNDEGVSWHVAEL--EQEEMPDGRHYGWSLWTARLPV 523

Query: 368 DPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
               +    +++        +D A N  P++ + ++
Sbjct: 524 SEAQRRAGDVEIWAKA----VDSAYNVQPEKFEHIW 555

Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 8EC: .EC: 3EC: .EC: 1

>sp|P07850|SUOX_CHICK Sulfite oxidase OS=Gallus gallus GN=SUOX PE=1 SV=3

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 96/155 (61%), Gaps = 12/155 (7%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES S WQQNDYKGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 305 RVAVSPDESPSRWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362

Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
            ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G   +AP  R W W LW  T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420

Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             T E+ I+          +D + N  PD +  ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|Q60HD0|SUOX_MACFA Sulfite oxidase, mitochondrial OS=Macaca fascicularis GN=SUOX PE=2 SV=3

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 98/156 (62%), Gaps = 11/156 (7%)

Query: 248 GKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLE 307
           G+V +   ES SHWQ+ DYKGFSPS DWDTVDF  +P+IQELPV SAI  P  D +  +E
Sbjct: 382 GRVSVQPEESYSHWQRRDYKGFSPSVDWDTVDFDSAPSIQELPVQSAITEP-RDGE-TVE 439

Query: 308 NHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPV 367
           + ++ ++GYAWSGGG+A++RVDV++D G TW VA   G++ +    + W W LW+   PV
Sbjct: 440 SGEVTIKGYAWSGGGRAVIRVDVSLDGGLTWQVAKLDGEEQRP--RKAWAWRLWQLQAPV 497

Query: 368 DPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
               KE++I+          +D   N  PD +  ++
Sbjct: 498 PAGQKELNIVCKA-------VDDGYNVQPDTVAPIW 526

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|Q07116|SUOX_RAT Sulfite oxidase, mitochondrial OS=Rattus norvegicus GN=Suox PE=1 SV=2

 Score =  135 bits (340), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 91/128 (71%), Gaps = 2/128 (1%)

Query: 23  YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEI-IMKAAGGSIEPFWAMYGVHL 81
           YS  D+++H +LK+ +WV     V+D+T+FV +HPGG+  +M AAGG +EPFWA+Y VH 
Sbjct: 86  YSKEDVRSHNNLKTGVWVTLGSEVFDVTKFVDLHPGGQSKLMLAAGGPLEPFWALYAVHN 145

Query: 82  QDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 141
           Q  V ELL  Y+IG ++ ED +++    ASDPY  +P+R P L+  S +P+NAEPPP +L
Sbjct: 146 QPHVRELLAEYKIGELNPED-RMSPPLEASDPYSNDPMRHPALRINSQRPFNAEPPPELL 204

Query: 142 VENFLTPS 149
            E+++TP+
Sbjct: 205 TESYITPN 212

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|P51687|SUOX_HUMAN Sulfite oxidase, mitochondrial OS=Homo sapiens GN=SUOX PE=1 SV=2

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/128 (49%), Positives = 86/128 (67%), Gaps = 2/128 (1%)

Query: 23  YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHL 81
           Y+  ++ +H   ++ IWV     V+D+TEFV +HPGG   +M AAGG +EPFWA+Y VH 
Sbjct: 85  YTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHN 144

Query: 82  QDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 141
           Q  V ELL  Y+IG ++ ED K+A     SDPY  +PVR P LK  S +P+NAEPPP +L
Sbjct: 145 QSHVRELLAQYKIGELNPED-KVAPTVETSDPYADDPVRHPALKVNSQRPFNAEPPPELL 203

Query: 142 VENFLTPS 149
            EN++TP+
Sbjct: 204 TENYITPN 211

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|Q8R086|SUOX_MOUSE Sulfite oxidase, mitochondrial OS=Mus musculus GN=Suox PE=1 SV=2

 Score =  133 bits (335), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 88/128 (68%), Gaps = 2/128 (1%)

Query: 23  YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHL 81
           YS  D+++H + K+ +WV     V+D+T+FV +HPGG   +M AAGG +EPFWA+Y VH 
Sbjct: 86  YSKEDVRSHNNPKTGVWVTLGSEVFDVTKFVDLHPGGPSKLMLAAGGPLEPFWALYAVHN 145

Query: 82  QDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 141
           Q  V ELL  Y+IG ++ EDS ++    ASDPY  +P+R P L+  S +P+NAEPPP +L
Sbjct: 146 QPHVRELLAEYKIGELNPEDS-MSPSVEASDPYADDPIRHPALRINSQRPFNAEPPPELL 204

Query: 142 VENFLTPS 149
            E ++TP+
Sbjct: 205 TEGYITPN 212

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|Q96Q11|TRNT1_HUMAN CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Homo sapiens GN=TRNT1 PE=1 SV=2

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 102/220 (46%), Gaps = 56/220 (25%)

Query: 572 MKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAG-------------------------- 605
           MKL SPEF S FT  LK L  +F K  ++LRIAG                          
Sbjct: 30  MKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQM 89

Query: 606 -EGTVTAKVLSYRNRREKEDRIG-----ENQPFRKLTLSV----------------QDKD 643
            E   +A +    NR EK   I      EN     L + V                +D +
Sbjct: 90  KEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAE 149

Query: 644 RS--------FRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARIC 695
           R            DGT++DYFNG+EDLK     FVG    RIQEDYLRILRYFRF+ RI 
Sbjct: 150 RRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIV 209

Query: 696 NNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGS 735
           + P +H  E L AI  N  GL  ISGERIW EL KIL G+
Sbjct: 210 DKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGN 249

Isoform 2: Adds 2 C residues (CC-) to the 3' terminus of tRNA molecules instead of a complete CCA end as isoform 1 does (in vitro).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

EC: 2

>sp|Q8K1J6|TRNT1_MOUSE CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Mus musculus GN=Trnt1 PE=2 SV=1

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 100/219 (45%), Gaps = 56/219 (25%)

Query: 572 MKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAG-------------------------- 605
           MKL SPEF S FT  LK L  +F K  ++LRIAG                          
Sbjct: 30  MKLQSPEFQSLFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQM 89

Query: 606 -EGTVTAKVLSYRNRREKEDRIG---ENQPFRKLTLSV------------------QDKD 643
            E   +A +    N+ EK   I      + F   TL +                  +D +
Sbjct: 90  KEMFQSAGIRMINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAE 149

Query: 644 RS--------FRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARIC 695
           R            DGT++DYFNG+ DLK     FVG    RIQEDYLRILRYFRF+ RI 
Sbjct: 150 RRDLTINSMFLGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIV 209

Query: 696 NNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGG 734
           + P +H  E L AI  N  GL  ISGERIW EL KIL G
Sbjct: 210 DRPGDHDHETLEAIAENAKGLAGISGERIWVELKKILTG 248

Adds and repairs the conserved 3'-CCA sequence necessary for the attachment of amino acids to the 3' terminus of tRNA molecules, using CTP and ATP as substrates.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

EC: 2

>sp|Q9S850|SUOX_ARATH Sulfite oxidase OS=Arabidopsis thaliana GN=SOX PE=1 SV=1

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 84/154 (54%), Gaps = 17/154 (11%)

Query: 255 HESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQ 314
            ES   + Q DYK F PS +WD ++++      + PV SAIC  V D ++ ++  ++ ++
Sbjct: 230 EESQGFFMQKDYKMFPPSVNWDNINWSSRRPQMDFPVQSAIC-SVEDVQM-VKPGKVSIK 287

Query: 315 GYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRH-----WGWTLWRATIPVDP 369
           GYA SGGG+ I RVD+++D G+ W  A+ T +  +  ++ H     W W L+ ATI V  
Sbjct: 288 GYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEATIDVSQ 347

Query: 370 KTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
            T+ ++            +D A N  P+ +++++
Sbjct: 348 TTEVIA----------KAVDSAANVQPENVESVW 371

Probably involved in sulfite oxidative detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 1

>sp|P39866|NIA2_PHAVU Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 18/145 (12%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVD-----FAKSPAIQELPVISAICLPVADAK 303
           ++++++ E  SH+   D +      D +  +     F     I EL + S I  P  D  
Sbjct: 287 RIVVTEQECESHYHYKDNRVLPSHVDPELANEEGWWFKPEYIINELNINSVITTPCHDEI 346

Query: 304 LKLENHQME----VQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWT 359
           L + +   +    V+GYA+SGGG+ + RV+VT+D G TWHV      +      ++W W 
Sbjct: 347 LPINSWTTQRPYVVRGYAYSGGGRKVTRVEVTLDGGETWHVCTLDHPEKPNKYGKYWCWC 406

Query: 360 LWRATIPVDPKTKEVSIMDMLMGKK 384
            W         + EV ++D+L  K+
Sbjct: 407 FW---------SLEVEVLDLLGTKE 422

Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.

Phaseolus vulgaris (taxid: 3885)

EC: 1

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	939
328779971	552	PREDICTED: probable sulfite oxidase, mit	0.416	0.708	0.370	1e-73
391332152	553	PREDICTED: probable sulfite oxidase, mit	0.395	0.670	0.364	5e-73
322790654	557	hypothetical protein SINV_10299 [Solenop	0.415	0.700	0.353	9e-66
332024429	555	Putative sulfite oxidase, mitochondrial	0.388	0.657	0.380	2e-65
307213225	466	Probable sulfite oxidase, mitochondrial	0.397	0.800	0.342	2e-61
380024418	552	PREDICTED: probable sulfite oxidase, mit	0.417	0.710	0.333	4e-58
443709493	465	hypothetical protein CAPTEDRAFT_17949 [C	0.385	0.778	0.338	2e-55
444518223	544	Sulfite oxidase, mitochondrial [Tupaia c	0.392	0.678	0.350	2e-53
157104247	515	sulfite reductase [Aedes aegypti] gi|108	0.388	0.708	0.334	3e-52
18859905	573	CG7280 [Drosophila melanogaster] gi|2509	0.400	0.656	0.322	1e-49

>gi|328779971|ref|XP_395316.3| PREDICTED: probable sulfite oxidase, mitochondrial-like [Apis mellifera]

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 175/472 (37%), Positives = 252/472 (53%), Gaps = 81/472 (17%)

Query: 5   VKALSK--LRAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEI- 61
           + AL+K  +  GE    L  Y+L ++  H + ++ IWV F+QGVYDIT+F++ HPGG   
Sbjct: 70  IYALNKKFISCGEFRVDLKTYNLEEVGKHDNKENRIWVTFKQGVYDITDFIEKHPGGSSK 129

Query: 62  IMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRS 121
           I+ AAG SIEPFWA++  H   E++ELLES RIGNIS+ED+     +  +DPY  EP+R 
Sbjct: 130 ILMAAGSSIEPFWAIFANHNTQEIYELLESMRIGNISKEDAIFNIIN-DNDPYSKEPIRH 188

Query: 122 PLLKATSLKPYNAEPPPSMLVENFLTPSLL---------SQVGSSTITLDQAI--VSKQL 170
            +LK    KP+ AEPP S+L+E+F+TP  L          ++   T TL+ AI  V+K++
Sbjct: 189 KVLKINGEKPFCAEPPSSLLIESFITPMELFYVRNHLPVPEIDLKTYTLELAIEEVTKKI 248

Query: 171 SSF----KHSDEKLKLVKVMAGNISQE--------------------------------D 194
             F    K+    +    + AGN   E                                D
Sbjct: 249 LKFEDIKKYPKYTITSAIMCAGNRRSEMTKEKQLKGLNWGVGAVGNATWTGTRLCDILKD 308

Query: 195 SKLAAKD---IASDPYVMEPVRSPL-----------LKATSLKPY--NAEPPPS------ 232
            K+   D   I  + Y ++P  +P             +A  +  Y  N +P P       
Sbjct: 309 LKIKEDDYNHIQFEGYDLDPSGTPYGASIPISKAMDSRADIILAYEMNEQPIPRDHGFPI 368

Query: 233 -MLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPV 291
            ++   ++         K+I+S  ES S WQQNDYK FSP+TDWD VDF+K+PAIQE+PV
Sbjct: 369 RVIVPGVVGARNVKWLAKIIVSKKESQSQWQQNDYKVFSPNTDWDNVDFSKAPAIQEMPV 428

Query: 292 ISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAP 351
           ISAIC P     +K+ N ++ V+GYAWSGGG+ I+RVDVT DQG TW+ AN   +D+ A 
Sbjct: 429 ISAICKPEQSEIIKVINGKINVKGYAWSGGGRKIIRVDVTNDQGETWYTANLDAEDNNAK 488

Query: 352 LTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
           + R+W WTLW   +PV  + KE+ I           +D + N  P+ +K ++
Sbjct: 489 VGRYWSWTLWSIDLPVKKELKEMEIW-------TKAVDASYNVQPENIKNIW 533

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391332152|ref|XP_003740501.1| PREDICTED: probable sulfite oxidase, mitochondrial-like [Metaseiulus occidentalis]

 Score =  282 bits (722), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 166/455 (36%), Positives = 240/455 (52%), Gaps = 84/455 (18%)

Query: 23  YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQ 82
           Y  +++  H   +  IWV +RQGVYDIT+FV+ HPGGE I+  AGGSIEPFW +YGVH +
Sbjct: 90  YDATEVSKHDTKEKRIWVTYRQGVYDITDFVEKHPGGENILLGAGGSIEPFWQIYGVHKK 149

Query: 83  DEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLV 142
            E+ ++LE YRIGN++  DS  A K+   DPY  +PVR P LK  SLKP+NAEPP  +L 
Sbjct: 150 PEILDMLEEYRIGNLA--DSGDALKN-TEDPYANDPVRHPALKPASLKPFNAEPPLKILA 206

Query: 143 ENFLTPSLLSQV------------------------GSSTITLDQ---------AIVSKQ 169
           E FLTP+ L  V                        G+ T+TL+             + Q
Sbjct: 207 ERFLTPNSLFYVRHHLPVPDPSPAEYALEVEGIGIEGTKTLTLEDLKTKFPKVTITAALQ 266

Query: 170 LSSFKHSDE-KLKLVKVM------AGNISQEDSKLA-----AKDIASDPYVMEPVRSPLL 217
            +  + S++ K+K VK +       GN +   ++L       +   +DP +   +   L 
Sbjct: 267 CAGNRRSEQNKIKKVKGLDWGAAAIGNATWSGARLTDVLAYLRVDCNDPRIQHVIFDGLD 326

Query: 218 KATSLKPYNAEP-----------------------------PPSMLYSSLLRIPFCSHTG 248
              + KPY A                               P   +   ++        G
Sbjct: 327 LDPTGKPYGASVTARRALNPGNDVILAYEMNGETLPRDHGYPVRAIVPGVVGARNVKWLG 386

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +++LS+ ES SHWQQNDYKGF PS DWDTVDF K+PAI+ELPV+S+IC P   +++ + +
Sbjct: 387 RIVLSEIESDSHWQQNDYKGFCPSVDWDTVDFKKAPAIEELPVVSSICDPADGSEVPIVD 446

Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
            ++ ++GYAWSGGG+ IVRVDV+ D G+TW  A    Q+      R W WT+W+A +PV 
Sbjct: 447 GKVFLRGYAWSGGGRKIVRVDVSADGGKTWCEAELVEQEKNTHHFRTWSWTIWQARVPVK 506

Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
           P  KEV ++          +D + N+ PD ++ ++
Sbjct: 507 PGQKEVELVSKA-------VDASYNSQPDTVEPLW 534

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790654|gb|EFZ15438.1| hypothetical protein SINV_10299 [Solenopsis invicta]

 Score =  258 bits (660), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 238/472 (50%), Gaps = 82/472 (17%)

Query: 4   GVKALSKLRAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG--EI 61
            + A   +  G+    +  Y+L ++  H   ++ IWV FRQGVYDITEFV  HPGG  +I
Sbjct: 77  ALSATPNVECGQLRKDMKTYTLEEVGRHDRKENRIWVTFRQGVYDITEFVDKHPGGPSKI 136

Query: 62  IMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRS 121
           +M AAGGSIEPFW ++  H   E+  LLES RIGNIS+ED++    D+  DPY  EP R 
Sbjct: 137 VM-AAGGSIEPFWTIFANHNTPEIHSLLESMRIGNISEEDAESNKSDLF-DPYANEPTRH 194

Query: 122 PLLKATSLKPYNAEPPPSML------------VENFL-TPSL--------LSQVGSSTIT 160
             L     KP+ AEP P +L            V N L  P +        L+  G++  T
Sbjct: 195 KALMINGSKPFCAEPSPPLLVESFLTPVDFFYVRNHLPVPQIDINDYTLELAVEGTTKKT 254

Query: 161 LD---------QAIVSKQLSSFKHSDE--KLKLVKVM------AGNISQEDSKLA--AKD 201
           LD         Q I +  +       E  K+K +K +       GN S   ++L    KD
Sbjct: 255 LDFKAITKYERQTITAAVMCGGNRRSEMSKVKQLKGINWNVGAVGNASWTGARLCDVLKD 314

Query: 202 IASDP----------YVMEPVRSPLLKATSLKP-------------YNAEP-------PP 231
           +  +           Y ++P  +P   +  +                N +P       P 
Sbjct: 315 LGINEEKFDHVQFEGYDLDPSGTPYAASIPISKAMDPRSDVILAYEMNGQPLSKDHGFPV 374

Query: 232 SMLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPV 291
            ++   ++         K+ +S  ES S WQQ DYKGFSPST+WD VDF+KSPAIQE+PV
Sbjct: 375 RVIVPGVVGARNVKWLSKISVSKEESQSQWQQGDYKGFSPSTNWDNVDFSKSPAIQEMPV 434

Query: 292 ISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAP 351
           ISAIC P     ++++N +++V+GYAWSGGG+ I+R+D+T D+G+TWH A+   +D +A 
Sbjct: 435 ISAICEPQNSDVVEVKNGKIQVKGYAWSGGGRKIIRIDITNDKGKTWHTADLI-EDLKAK 493

Query: 352 LTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             R+W WTLW   +PVD    EV I           +D A N  P+    ++
Sbjct: 494 QGRYWSWTLWNVELPVDKNVNEVQIW-------AKAVDSAYNVQPENFSHIY 538

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024429|gb|EGI64627.1| Putative sulfite oxidase, mitochondrial [Acromyrmex echinatior]

 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 169/444 (38%), Positives = 225/444 (50%), Gaps = 79/444 (17%)

Query: 7   ALSKLRAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKA 65
           A   ++ G+    +  Y+L +++NH   K  IWV F QGVYDIT+FV  HPGG   IM A
Sbjct: 78  ATQNVKCGQFRKDMKTYTLEEVRNHDSEKKGIWVTFGQGVYDITKFVDKHPGGPSKIMMA 137

Query: 66  AGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLK 125
           AGGSI+PFW ++  H   E+  LLES RIGNIS+ED+K    D+  DPY  +PVR   LK
Sbjct: 138 AGGSIDPFWMIFANHNTPEIHSLLESMRIGNISEEDAKFNKSDLY-DPYANDPVRHKALK 196

Query: 126 ATSLKPYNAEP-PPSML-----------VENFL-TPSL--------LSQVGSSTITLDQA 164
               KP+ AEP PP ++           V N L  P +        L+  G++  TLD  
Sbjct: 197 VKRNKPFCAEPSPPLLVESFFTPVPFFYVRNHLPVPEIELKDYTLELAIEGTTKKTLDFK 256

Query: 165 IVSK------------------QLSSFKHSD--------------EKLKLVKVMAGNISQ 192
            + K                  ++S  KH +                ++L  V+      
Sbjct: 257 ALQKYEKRTVTATMMCGGNRRSEMSKVKHLEGVQWDVGAVGNATWTGVRLCDVLKDLGVN 316

Query: 193 EDSKLAAKDIASDPYVMEPVRSPL-----------LKATSLKPY--NAEP-------PPS 232
           ED   A   +  D + ++P   P             KA  +  Y  N EP       P  
Sbjct: 317 ED---AFNHVQFDGHDLDPSGMPYGGSIPISKAMDPKADVILAYEMNGEPLTQDHGFPVR 373

Query: 233 MLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVI 292
           +    +L         K+ +S  ES S WQQ DYKG  PST WD VDF KSPAIQE+PV+
Sbjct: 374 VFVPGVLGARSVKWLSKINVSKEESQSQWQQGDYKGLPPSTTWDNVDFNKSPAIQEMPVM 433

Query: 293 SAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPL 352
           SAIC P    K++++N +++V+GYAWSGGG+ I RVDVT D G+TWH A+   +D Q   
Sbjct: 434 SAICDPQDTDKVEIKNGKIKVKGYAWSGGGRKIFRVDVTNDNGKTWHTADLM-EDLQTNE 492

Query: 353 TRHWGWTLWRATIPVDPKTKEVSI 376
            RHW WTLW   +PVD K+KEV I
Sbjct: 493 GRHWSWTLWNVELPVDNKSKEVEI 516

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213225|gb|EFN88720.1| Probable sulfite oxidase, mitochondrial [Harpegnathos saltator]

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 155/452 (34%), Positives = 222/452 (49%), Gaps = 79/452 (17%)

Query: 23  YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEI-IMKAAGGSIEPFWAMYGVHL 81
           Y++ ++  H + +  IW+ FRQGVYDITEF+  HPGG   I+ AAGGSI+PFW+++  H 
Sbjct: 4   YTMEEVGKHDNKEKRIWITFRQGVYDITEFIDKHPGGSSKILMAAGGSIDPFWSIFANHN 63

Query: 82  QDEVFELLESYRIGNISQEDSKLAAKD----IASDP-------------YVMEPVRSPLL 124
             E++ LLES RIGNIS+ED+K    D     A+DP             +  EP   P+L
Sbjct: 64  TPEIYSLLESMRIGNISEEDAKSNKNDSHDAYANDPSRHKTLTINNQKPFCAEP-PPPIL 122

Query: 125 KATSLKP------YNAEPPPSMLVENFLTPSLLSQVGSSTITLDQ-------AIVSKQLS 171
             + L P       N  P P + ++++     +          D        AI +  + 
Sbjct: 123 VDSFLTPNELFYIRNHLPVPEIDLKDYTLELTIEGETKKVFDFDALKKYKKYAITAAVMC 182

Query: 172 SFKHSDEKLKLVKV--------MAGNISQEDSKL------------AAKDIASDPYVMEP 211
                 E  K+ K+          GN      +L            A   +  + Y ++P
Sbjct: 183 GGNRRSEMAKVKKLRGLSWNVGAVGNAKWAGVRLCDILRDLGINENAFSHVQFEGYDLDP 242

Query: 212 VRSP----LLKATSLKP---------YNAEP-------PPSMLYSSLLRIPFCSHTGKVI 251
             +P    +  A ++ P          N +P       P  ++   ++         K+ 
Sbjct: 243 SGTPYGASIPIAKAMDPRADVILAYEMNGQPLSRDHGFPLRVIVPGVVGARNVKWVNKIT 302

Query: 252 LSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQM 311
           +S  ES S WQQ DYKGFSPST WD VDF+KSPAIQE+PVISAIC P     ++++N ++
Sbjct: 303 VSKEESPSQWQQGDYKGFSPSTTWDNVDFSKSPAIQEMPVISAICSPQDADTVEVKNGKI 362

Query: 312 EVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKT 371
           EV+GYAWSGGG+ I+RVDVT +QG  WH AN + QD QA   R+W WTLW   +PVD  +
Sbjct: 363 EVKGYAWSGGGRKIIRVDVTNNQGANWHTANLSEQDFQAKEGRYWSWTLWNVELPVDKNS 422

Query: 372 KEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
           KE  I           +D A N  P+    ++
Sbjct: 423 KETEIW-------AKAVDSAYNVQPESFANIY 447

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024418|ref|XP_003695994.1| PREDICTED: probable sulfite oxidase, mitochondrial-like [Apis florea]

 Score =  233 bits (594), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 239/471 (50%), Gaps = 79/471 (16%)

Query: 5   VKALSK--LRAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEI- 61
           + AL+K  +  GE    L  Y+L ++  H + ++ IWV F+QGVYDIT+F++ HPGG   
Sbjct: 70  IYALNKKFIACGEFRVDLKTYNLEEVGKHDNKENRIWVTFKQGVYDITDFIEKHPGGSSK 129

Query: 62  IMKAAGGSIEPFWAMYGVHLQDEVFELLESYR---------IGNISQEDSKLAAKDI--- 109
           I+ AAG SIEPFWA++  H   E++ELLES R         I N   ++   + + I   
Sbjct: 130 ILMAAGSSIEPFWAIFANHNTQEIYELLESMRIGNISKEDAIFNTINDNDPYSKEPIRHK 189

Query: 110 -----ASDPYVMEPVRSPLLKA--TSLKPY---NAEPPPSMLVENFLTPSLLSQVGSSTI 159
                   P+  EP  S L+++  T ++ +   N  P P + ++ +    ++ +V +  +
Sbjct: 190 VLKINGEKPFCAEPPPSLLIESFITPMELFYVRNHLPVPEIDLKTYTLELVIEEVTNKIL 249

Query: 160 -----------TLDQAIVSKQLSSFKHSDEK-LKLVKVMAGNISQ------------EDS 195
                      T+  AI+       + S EK LK +    G +              +D 
Sbjct: 250 KFEDIKKYPKYTITSAIMCAGNRRSEMSKEKQLKGLNWGIGAVGNATWTGTRLCDILKDL 309

Query: 196 KLAAKD---IASDPYVMEPVRSPL-----------LKATSLKPY--NAEPPPS------- 232
           K+   D   I  + Y ++P  +P             +A  +  Y  N +P P        
Sbjct: 310 KIKEDDYNHIQFEGYDLDPSGTPYGASIPISKAMDSRADIILAYEMNEQPIPRDHGFPIR 369

Query: 233 MLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVI 292
           ++   ++         K+I+S  ES S WQQNDYK FSP+TDWD VDF+K+PAIQE+PVI
Sbjct: 370 VIVPGVVGARNVKWLAKIIVSKKESQSQWQQNDYKVFSPNTDWDNVDFSKAPAIQEMPVI 429

Query: 293 SAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPL 352
           SAIC P     +K+ N ++ V+GYAWSGGG+ I+RVDVT DQG TWH AN   +D+ A +
Sbjct: 430 SAICKPEQSEIIKVINGKINVKGYAWSGGGRKIIRVDVTNDQGETWHTANLDAEDNNAKI 489

Query: 353 TRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
            R+W WTLW   +PV  + KE+ I           +D + N  P+ +K ++
Sbjct: 490 GRYWSWTLWSVDLPVKKELKEMEIW-------TKAVDASYNVQPESIKNIW 533

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443709493|gb|ELU04165.1| hypothetical protein CAPTEDRAFT_17949 [Capitella teleta]

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 213/440 (48%), Gaps = 78/440 (17%)

Query: 31  HKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLE 90
           H   ++ IWV ++ G+YDIT+F+  HPGG+ I+ AAG S+EPFW +Y +H   EV+E+LE
Sbjct: 16  HNSKEAGIWVTYKDGIYDITDFMIGHPGGDKILLAAGSSVEPFWDLYAIHRSPEVYEILE 75

Query: 91  SYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSL 150
           S RIGN+  ED         +DPY  +P R P LK  S KP+NAE P S+L +NF+TP+ 
Sbjct: 76  SLRIGNLHPEDKVARPAVNPNDPYKHDPARHPALKVNSAKPFNAEAPGSLLADNFITPND 135

Query: 151 LS------------------QVGSSTITLD---------QAIVSKQLSSFKHSD-EKLKL 182
           L                   QVG     L+           I + Q +  + S+  KLK 
Sbjct: 136 LFFVRNHLPVPKVDPKKFRLQVGGKQFALEDLKQKFKQHSVIATVQCAGNRRSELSKLKA 195

Query: 183 VK----------------------VMAGNISQEDSKLAA-----KDIASDPY----VMEP 211
           V                       + +  I+ ED K         D   +PY     ME 
Sbjct: 196 VNGLSWSHAAISNAEWTGVLLSDLLTSAGINGEDYKHCILQGLDTDGEGNPYEASIPMET 255

Query: 212 VRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGK--------VILSDHESTSHWQQ 263
              P  +A      N +  P + +   LR+      G         +  S  ES SHWQ+
Sbjct: 256 ASDPKKEAIVAFEMNGQELP-LDHGFPLRVIVPGTVGARQVKWVKMISASQEESYSHWQR 314

Query: 264 NDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGK 323
            DY  FSPST  DT D+ K+ AIQE P  SAIC P   A   +E  ++ ++GYAWSGGG+
Sbjct: 315 KDYMLFSPSTGHDTADYDKAVAIQEYPTQSAICEPRNGA--TIEGSEVTLRGYAWSGGGR 372

Query: 324 AIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGK 383
            I+RV+VT D G+TW+ A+  G D Q    + W W LW   +PV     ++SI       
Sbjct: 373 GIMRVEVTPDGGKTWYEADMHG-DEQQKRHQQWAWVLWEVAVPVPDGASDMSIACRA--- 428

Query: 384 KPHDIDFATNATPDQMKAMF 403
               ID + N+ P+++++++
Sbjct: 429 ----IDSSHNSQPEKLESVW 444

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|444518223|gb|ELV12034.1| Sulfite oxidase, mitochondrial [Tupaia chinensis]

 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 159/454 (35%), Positives = 225/454 (49%), Gaps = 85/454 (18%)

Query: 23  YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHL 81
           Y+  ++ +H   ++ IWV     V+D+TEFV +HPGG   +M AAGG +EPFWA+Y VH 
Sbjct: 84  YTKEEVSSHNTPETRIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHN 143

Query: 82  QDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAE------ 135
           Q  V ELL  Y+IG +  ED K A     SDPY  +P+R P LK  S +P+NAE      
Sbjct: 144 QSHVRELLAQYKIGELDPED-KAAPTLETSDPYADDPMRHPALKVNSQRPFNAEPPAELL 202

Query: 136 ------PPPSMLVENFL-TPSL------LSQVGSS--------------------TITLD 162
                 P P     N L  P+L      L  VG+S                    T+TL 
Sbjct: 203 TENYITPNPIFFTRNHLPVPNLDPDTYRLHVVGASVSQSLCLSLDDLYKFPKHEITVTLQ 262

Query: 163 QAIVSKQ-----------------LSSFKHSDEKLKLVKVMAGN-ISQEDSKLAAKDIAS 204
            A   +                  +S+ + +  +L  V   AG+ +S+ D+ +  + + S
Sbjct: 263 CAGNRRSEMTRVKEVKGLEWRIGAISTARWAGARLCDVLAQAGHQLSETDAHVCFEGLDS 322

Query: 205 DPYVMEPVRS-PLLKATS-----LKPY--NAEPPP-------SMLYSSLLRIPFCSHTGK 249
           DP       S PL +A       L  Y  N +P P        ++   ++        G+
Sbjct: 323 DPTGTAYGASIPLARAMDPEAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGGRHVKWLGR 382

Query: 250 VILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENH 309
           V +   ES SHWQ+ DYKGFSPS DWDTVDF  +P+IQELPV SAI  P  D +  +E+ 
Sbjct: 383 VSVEPEESYSHWQRRDYKGFSPSVDWDTVDFDSAPSIQELPVQSAITEP-QDGE-TVESG 440

Query: 310 QMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDP 369
           ++ V+GYAWSGGG+A++RVDV++D G TW  A   G D Q P  + W W LW+   PV  
Sbjct: 441 EVTVKGYAWSGGGRAVIRVDVSLDGGLTWQAAELHG-DEQRP-RKAWAWRLWQLQAPVPA 498

Query: 370 KTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             KE++I+          +D + N  PD +  ++
Sbjct: 499 GQKELNIVCKA-------VDDSYNVQPDTVAPIW 525

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157104247|ref|XP_001648320.1| sulfite reductase [Aedes aegypti] gi|108869249|gb|EAT33474.1| AAEL014252-PA [Aedes aegypti]

 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 209/443 (47%), Gaps = 78/443 (17%)

Query: 2   EDGVKALSKLRAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEI 61
           +D  KA ++LR       LP YS+  +  H   K+ IWV +  GVYDIT FV  HPG + 
Sbjct: 38  QDISKAHTELR-----KDLPVYSMDQVGEHNSPKTGIWVTYGIGVYDITSFVPKHPGSDK 92

Query: 62  IMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQ--------EDSKLAA------- 106
           +M AAG +I+PFW ++  H   EV  LLE++RIGN+ +        +D+  AA       
Sbjct: 93  VMLAAGSAIDPFWHIFQQHNTKEVLTLLETFRIGNLREDDVISTQDQDNPWAAEPKRHAI 152

Query: 107 -KDIASDPYVMEPVRSPLLKATSLKP------YNAEPPPSMLVENF---LTPSLLSQVGS 156
            K  A  P+  EP  S L+ A  L P       N  P P + ++ +   +   L  +  S
Sbjct: 153 LKPTAQRPFNAEPPASILVDAF-LTPNEFFYVRNHLPVPEVDIKEYELEIDVELSDKTKS 211

Query: 157 STITLD-------QAIVSKQLSSFKHSDEKLKLVKVMA---------------------- 187
             +  D         +V+  +       E +++  +                        
Sbjct: 212 KKLKYDDLRKLPKHKVVATIMCGGNRRGEMMEIKPIKGLSWGPSAVGNAEWAGPRLSDVL 271

Query: 188 ---GNISQEDSKLAAKDIASDPYVMEPVRS-PLLKATSLK-------PYNAEP------- 229
              G +S E S +  + +  DP       S PL KA   +         N EP       
Sbjct: 272 KAMGVVSDETSHVHFEGLDVDPTSTPYAASIPLSKAMDPRGDVILAYEMNGEPLSRDHGY 331

Query: 230 PPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQEL 289
           P  ++   ++        G++++S  ES SHWQQNDYK FSPSTDWDTVDF  +PAIQ +
Sbjct: 332 PVRVIVPGVVGSRNVKWVGRIVVSKEESGSHWQQNDYKSFSPSTDWDTVDFKSAPAIQYM 391

Query: 290 PVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQ 349
           PV SAIC P    +LK +N  + V+GYAWSGGG+ ++RVD+T D G TW VA+    +  
Sbjct: 392 PVTSAICSPANGDQLKADNGFITVKGYAWSGGGQEVIRVDLTADGGNTWIVADLDQVEKG 451

Query: 350 APLTRHWGWTLWRATIPVDPKTK 372
               RHW W+LW A IP  P  K
Sbjct: 452 TGRGRHWSWSLWTAKIPAKPGQK 474

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18859905|ref|NP_573331.1| CG7280 [Drosophila melanogaster] gi|25091335|sp|Q9VWP4.1|SUOX_DROME RecName: Full=Probable sulfite oxidase, mitochondrial; Flags: Precursor gi|7293520|gb|AAF48894.1| CG7280 [Drosophila melanogaster] gi|17862040|gb|AAL39497.1| LD05920p [Drosophila melanogaster] gi|220942938|gb|ACL84012.1| CG7280-PA [synthetic construct] gi|220953096|gb|ACL89091.1| CG7280-PA [synthetic construct]

 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 222/456 (48%), Gaps = 80/456 (17%)

Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGV 79
           LP Y   +++ H  ++  IWV +  GVYD+T+FV+ HPGG+ I+ AAG +I+PFW +Y  
Sbjct: 108 LPTYRAEEVEQHNSVEKRIWVTYGLGVYDVTDFVENHPGGDKILMAAGSAIDPFWGIYQQ 167

Query: 80  HLQDEVFEL--------LESYRIGNI--------SQEDSKLAAKDIASD-PYVMEPVRSP 122
           H   EV EL        LE   + N+        SQE  + A    AS  P+  EP    
Sbjct: 168 HNTLEVLELLEGFRIGNLEGLVVTNVDDELGSPWSQEPQRHALLKPASKRPFNAEPPIG- 226

Query: 123 LLKATSLKP------YNAEPPPSMLVENFLTPSLLSQVGSSTITLD-------QAIVSKQ 169
           LL      P       N  P P +  E++    +       T+TLD        ++ +  
Sbjct: 227 LLAEQFYTPNELFYVRNHLPVPVINPEDYEL-EIEGGAKDKTLTLDGIKALPKHSVTAAI 285

Query: 170 LSSFKHSDE--KLKLVKVMA------GNISQEDSKLA------------AKDIASDPYVM 209
           +       E  K+K VK ++      GN     ++L              K +  +   +
Sbjct: 286 MCGGNRRSEMTKVKAVKGLSWGAGAVGNAKWSGARLCDILREQGVQPDETKHVIFEGADL 345

Query: 210 EPVRSP----LLKATSLKP---------YNAEP-------PPSMLYSSLLRIPFCSHTGK 249
           +P   P    +  A +L P          N EP       P  ++    +         +
Sbjct: 346 DPTSHPYGASIPLAKALDPRGDVILAYEMNDEPLSRDHGFPIRVIVPGTVGARNVKWLTR 405

Query: 250 VILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENH 309
           ++++D ES SHWQQNDYKGFSPSTDWDTVDF+KS AIQ +PV SAIC P   A++K+++ 
Sbjct: 406 IVVADKESDSHWQQNDYKGFSPSTDWDTVDFSKSDAIQAMPVTSAICTPQPGARVKVDDD 465

Query: 310 Q--MEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPV 367
           +  + V+GYAWSGGG+ IVRVD+T D+G +WHVA    +  + P  RH+GW+LW A +PV
Sbjct: 466 EGHITVRGYAWSGGGRKIVRVDLTNDEGVSWHVAEL--EQEEMPDGRHYGWSLWTARLPV 523

Query: 368 DPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
               +    +++        +D A N  P++ + ++
Sbjct: 524 SEAQRRAGDVEIWAKA----VDSAYNVQPEKFEHIW 555

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	939
UNIPROTKB|I3LLT5	544	SUOX "Uncharacterized protein"	0.134	0.231	0.523	2e-71
UNIPROTKB|P51687	545	SUOX "Sulfite oxidase, mitocho	0.134	0.231	0.507	3.6e-70
RGD|619994	546	Suox "sulfite oxidase" [Rattus	0.134	0.230	0.476	2e-69
UNIPROTKB|Q07116	546	Suox "Sulfite oxidase, mitocho	0.134	0.230	0.476	2e-69
UNIPROTKB|F6RUR3	547	SUOX "Uncharacterized protein"	0.134	0.230	0.5	5.4e-67
UNIPROTKB|F1PVD4	693	SUOX "Uncharacterized protein"	0.134	0.181	0.507	6.3e-67
UNIPROTKB|P07850	459	SUOX "Sulfite oxidase" [Gallus	0.132	0.270	0.534	1.6e-66
FB|FBgn0030966	573	CG7280 [Drosophila melanogaste	0.155	0.254	0.493	1.6e-63
MGI|MGI:2446117	546	Suox "sulfite oxidase" [Mus mu	0.134	0.230	0.476	3e-59
WB|WBGene00010397	541	suox-1 [Caenorhabditis elegans	0.139	0.242	0.422	1.1e-57

UNIPROTKB|I3LLT5 SUOX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 360 (131.8 bits), Expect = 2.0e-71, Sum P(3) = 2.0e-71
 Identities = 68/130 (52%), Positives = 90/130 (69%)

Query:   248 GKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLE 307
             GKV +   ES SHWQ+ DYKGFSPS DWDTVDF  +P+IQELPV SAI  P  D +  +E
Sbjct:   381 GKVSVEPEESHSHWQRRDYKGFSPSVDWDTVDFDSAPSIQELPVQSAITQP-KDGET-IE 438

Query:   308 NHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPV 367
             + ++ ++GYAWSGGG+A+VRVDV++D G TW  A   G++ Q P  + W W LW+   PV
Sbjct:   439 SREVTIKGYAWSGGGRAVVRVDVSLDGGLTWQAAELDGEE-QRP-RKAWAWRLWQLQFPV 496

Query:   368 DPKTKEVSIM 377
                 KE++I+
Sbjct:   497 PAGKKELNII 506

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|P51687 SUOX "Sulfite oxidase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 351 (128.6 bits), Expect = 3.6e-70, Sum P(3) = 3.6e-70
 Identities = 66/130 (50%), Positives = 91/130 (70%)

Query:   248 GKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLE 307
             G+V +   ES SHWQ+ DYKGFSPS DW+TVDF  +P+IQELPV SAI  P  D +  +E
Sbjct:   382 GRVSVQPEESYSHWQRRDYKGFSPSVDWETVDFDSAPSIQELPVQSAITEP-RDGET-VE 439

Query:   308 NHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPV 367
             + ++ ++GYAWSGGG+A++RVDV++D G TW VA   G++ Q P  + W W LW+   PV
Sbjct:   440 SGEVTIKGYAWSGGGRAVIRVDVSLDGGLTWQVAKLDGEE-QRP-RKAWAWRLWQLKAPV 497

Query:   368 DPKTKEVSIM 377
                 KE++I+
Sbjct:   498 PAGQKELNIV 507

GO:0009055 "electron carrier activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0043546 "molybdopterin cofactor binding" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0000098 "sulfur amino acid catabolic process" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0008482 "sulfite oxidase activity" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0070221 "sulfide oxidation, using sulfide:quinone oxidoreductase" evidence=TAS

RGD|619994 Suox "sulfite oxidase" [Rattus norvegicus (taxid:10116)]

 Score = 347 (127.2 bits), Expect = 2.0e-69, Sum P(3) = 2.0e-69
 Identities = 61/128 (47%), Positives = 91/128 (71%)

Query:    23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEI-IMKAAGGSIEPFWAMYGVHL 81
             YS  D+++H +LK+ +WV     V+D+T+FV +HPGG+  +M AAGG +EPFWA+Y VH 
Sbjct:    86 YSKEDVRSHNNLKTGVWVTLGSEVFDVTKFVDLHPGGQSKLMLAAGGPLEPFWALYAVHN 145

Query:    82 QDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 141
             Q  V ELL  Y+IG ++ ED +++    ASDPY  +P+R P L+  S +P+NAEPPP +L
Sbjct:   146 QPHVRELLAEYKIGELNPED-RMSPPLEASDPYSNDPMRHPALRINSQRPFNAEPPPELL 204

Query:   142 VENFLTPS 149
              E+++TP+
Sbjct:   205 TESYITPN 212

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006790 "sulfur compound metabolic process" evidence=IEA

GO:0007584 "response to nutrient" evidence=IDA

GO:0008482 "sulfite oxidase activity" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA;IDA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0043546 "molybdopterin cofactor binding" evidence=IEA;IDA

UNIPROTKB|Q07116 Suox "Sulfite oxidase, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 347 (127.2 bits), Expect = 2.0e-69, Sum P(3) = 2.0e-69
 Identities = 61/128 (47%), Positives = 91/128 (71%)

Query:    23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEI-IMKAAGGSIEPFWAMYGVHL 81
             YS  D+++H +LK+ +WV     V+D+T+FV +HPGG+  +M AAGG +EPFWA+Y VH 
Sbjct:    86 YSKEDVRSHNNLKTGVWVTLGSEVFDVTKFVDLHPGGQSKLMLAAGGPLEPFWALYAVHN 145

Query:    82 QDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 141
             Q  V ELL  Y+IG ++ ED +++    ASDPY  +P+R P L+  S +P+NAEPPP +L
Sbjct:   146 QPHVRELLAEYKIGELNPED-RMSPPLEASDPYSNDPMRHPALRINSQRPFNAEPPPELL 204

Query:   142 VENFLTPS 149
              E+++TP+
Sbjct:   205 TESYITPN 212

GO:0009055 "electron carrier activity" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

UNIPROTKB|F6RUR3 SUOX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 5.4e-67, Sum P(3) = 5.4e-67
 Identities = 65/130 (50%), Positives = 87/130 (66%)

Query:   248 GKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLE 307
             GKV +   ES SHWQ+ DYKGFSPS DWDTVDF  +P+IQELP+ SAI  P     +   
Sbjct:   384 GKVSVEPEESFSHWQRRDYKGFSPSVDWDTVDFDSAPSIQELPIQSAITQPKEGETIG-- 441

Query:   308 NHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPV 367
             + ++ V+GYAWSGGG+A+VRVDV++D G TW VA   G++ +A   + W W LW    P+
Sbjct:   442 SGEVTVKGYAWSGGGRAVVRVDVSLDGGLTWQVAELEGEEQRA--RKAWAWRLWHLQAPL 499

Query:   368 DPKTKEVSIM 377
                 KE++I+
Sbjct:   500 PAGIKELNIV 509

GO:0005739 "mitochondrion" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|F1PVD4 SUOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 343 (125.8 bits), Expect = 6.3e-67, Sum P(3) = 6.3e-67
 Identities = 66/130 (50%), Positives = 89/130 (68%)

Query:   248 GKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLE 307
             GKV +   ES SHWQ+ DYKGFSPS DWDTVDF  +P+IQELPV SAI  P  D +  ++
Sbjct:   530 GKVSVEPEESYSHWQRRDYKGFSPSVDWDTVDFDSAPSIQELPVQSAITEP-KDGET-VQ 587

Query:   308 NHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPV 367
             + ++ ++GYAWSGGG+A+VRVDV++D G TW VA   G++   P  + W W LW+    V
Sbjct:   588 SGEVTIKGYAWSGGGRAVVRVDVSLDGGLTWQVAELDGEEPH-P-RKAWAWRLWQLQASV 645

Query:   368 DPKTKEVSIM 377
                 KE++I+
Sbjct:   646 PAGKKELNIV 655

GO:0005739 "mitochondrion" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|P07850 SUOX "Sulfite oxidase" [Gallus gallus (taxid:9031)]

 Score = 353 (129.3 bits), Expect = 1.6e-66, Sum P(3) = 1.6e-66
 Identities = 69/129 (53%), Positives = 87/129 (67%)

Query:   249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
             +V +S  ES S WQQNDYKGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct:   305 RVAVSPDESPSRWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362

Query:   309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
              ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G   +AP  R W W LW  T+PV+
Sbjct:   363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420

Query:   369 PKTKEVSIM 377
               T E+ I+
Sbjct:   421 AGT-ELEIV 428

GO:0009055 "electron carrier activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0043546 "molybdopterin cofactor binding" evidence=IEA

GO:0008482 "sulfite oxidase activity" evidence=IEA

GO:0006790 "sulfur compound metabolic process" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

FB|FBgn0030966 CG7280 [Drosophila melanogaster (taxid:7227)]

 Score = 403 (146.9 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
 Identities = 76/154 (49%), Positives = 107/154 (69%)

Query:   249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
             +++++D ES SHWQQNDYKGFSPSTDWDTVDF+KS AIQ +PV SAIC P   A++K+++
Sbjct:   405 RIVVADKESDSHWQQNDYKGFSPSTDWDTVDFSKSDAIQAMPVTSAICTPQPGARVKVDD 464

Query:   309 HQ--MEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIP 366
              +  + V+GYAWSGGG+ IVRVD+T D+G +WHVA    +  + P  RH+GW+LW A +P
Sbjct:   465 DEGHITVRGYAWSGGGRKIVRVDLTNDEGVSWHVAEL--EQEEMPDGRHYGWSLWTARLP 522

Query:   367 VDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMK 400
             V    +     D+ +  K   +D A N  P++ +
Sbjct:   523 VSEAQRRAG--DVEIWAKA--VDSAYNVQPEKFE 552

GO:0008482 "sulfite oxidase activity" evidence=ISS;NAS

GO:0005758 "mitochondrial intermembrane space" evidence=ISS;NAS

GO:0030163 "protein catabolic process" evidence=NAS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

GO:0020037 "heme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

MGI|MGI:2446117 Suox "sulfite oxidase" [Mus musculus (taxid:10090)]

 Score = 344 (126.2 bits), Expect = 3.0e-59, Sum P(2) = 3.0e-59
 Identities = 61/128 (47%), Positives = 88/128 (68%)

Query:    23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEI-IMKAAGGSIEPFWAMYGVHL 81
             YS  D+++H + K+ +WV     V+D+T+FV +HPGG   +M AAGG +EPFWA+Y VH 
Sbjct:    86 YSKEDVRSHNNPKTGVWVTLGSEVFDVTKFVDLHPGGPSKLMLAAGGPLEPFWALYAVHN 145

Query:    82 QDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSML 141
             Q  V ELL  Y+IG ++ EDS   + + ASDPY  +P+R P L+  S +P+NAEPPP +L
Sbjct:   146 QPHVRELLAEYKIGELNPEDSMSPSVE-ASDPYADDPIRHPALRINSQRPFNAEPPPELL 204

Query:   142 VENFLTPS 149
              E ++TP+
Sbjct:   205 TEGYITPN 212

GO:0005739 "mitochondrion" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0007584 "response to nutrient" evidence=ISO

GO:0008482 "sulfite oxidase activity" evidence=ISO

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0020037 "heme binding" evidence=ISO

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0043546 "molybdopterin cofactor binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

WB|WBGene00010397 suox-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 309 (113.8 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
 Identities = 57/135 (42%), Positives = 84/135 (62%)

Query:    17 ISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAM 76
             +  L  Y   +++ H      IWV ++ GVYD+T+F+ MHPGG+ I+ AAG +++PFWA+
Sbjct:    76 LENLQIYKQEEVKKHGKDADRIWVTYKDGVYDVTDFIAMHPGGDKILLAAGAAVDPFWAL 135

Query:    77 YGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEP 136
             Y  H   EV E+LE YRIG +  +D     K +A D +  +P R P L   + KP+NAE 
Sbjct:   136 YSQHKTKEVLEILEGYRIGKLDVKD---VPKPVA-DAFSNDPERHPALLVRNSKPFNAET 191

Query:   137 PPSMLVENFLTPSLL 151
             PPS+L ++F TP+ L
Sbjct:   192 PPSLLTDHFYTPNEL 206

GO:0009055 "electron carrier activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.7.21	LOW CONFIDENCE prediction!
3rd Layer	2.7.7	0.691
4th Layer	2.7.7.25	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	939
cd02111	365	cd02111, eukary_SO_Moco, molybdopterin binding dom	6e-50
pfam03404	130	pfam03404, Mo-co_dimer, Mo-co oxidoreductase dimer	2e-27
COG0617	412	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A)	2e-20
cd02110	317	cd02110, SO_family_Moco_dimer, Subgroup of sulfite	5e-18
PLN00177	393	PLN00177, PLN00177, sulfite oxidase; Provisional	9e-17
cd02112	386	cd02112, eukary_NR_Moco, molybdopterin binding dom	5e-15
pfam00173	74	pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid	5e-14
PRK13299	394	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Pr	1e-13
cd02111	365	cd02111, eukary_SO_Moco, molybdopterin binding dom	3e-13
cd05398	139	cd05398, NT_ClassII-CCAase, Nucleotidyltransferase	3e-12
cd02111	365	cd02111, eukary_SO_Moco, molybdopterin binding dom	1e-11
pfam01743	126	pfam01743, PolyA_pol, Poly A polymerase head domai	1e-11
PLN02252	888	PLN02252, PLN02252, nitrate reductase [NADPH]	2e-11
pfam03404	130	pfam03404, Mo-co_dimer, Mo-co oxidoreductase dimer	6e-10
PLN00177	393	PLN00177, PLN00177, sulfite oxidase; Provisional	8e-10
cd02110	317	cd02110, SO_family_Moco_dimer, Subgroup of sulfite	6e-08
pfam12627	64	pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB-	7e-08
COG5274	164	COG5274, CYB5, Cytochrome b involved in lipid meta	3e-07
cd02110	317	cd02110, SO_family_Moco_dimer, Subgroup of sulfite	7e-07
PRK13299	394	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Pr	8e-07
PLN02252	888	PLN02252, PLN02252, nitrate reductase [NADPH]	1e-06
COG0617	412	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A)	2e-06
cd05398	139	cd05398, NT_ClassII-CCAase, Nucleotidyltransferase	2e-06
PLN02252	888	PLN02252, PLN02252, nitrate reductase [NADPH]	2e-06
cd02112	386	cd02112, eukary_NR_Moco, molybdopterin binding dom	3e-06
cd00321	156	cd00321, SO_family_Moco, Sulfite oxidase (SO) fami	3e-06
COG0617	412	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A)	4e-06
PLN00177	393	PLN00177, PLN00177, sulfite oxidase; Provisional	5e-06
pfam12627	64	pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB-	5e-06
TIGR01942	410	TIGR01942, pcnB, poly(A) polymerase	6e-06
PRK11623	472	PRK11623, pcnB, poly(A) polymerase I; Provisional	6e-06
pfam01743	126	pfam01743, PolyA_pol, Poly A polymerase head domai	1e-05
PRK11623	472	PRK11623, pcnB, poly(A) polymerase I; Provisional	4e-05
cd02113	326	cd02113, bact_SoxC_Moco, bacterial SoxC is a membe	6e-05
cd02111	365	cd02111, eukary_SO_Moco, molybdopterin binding dom	1e-04
PLN02252	888	PLN02252, PLN02252, nitrate reductase [NADPH]	1e-04
PLN00177	393	PLN00177, PLN00177, sulfite oxidase; Provisional	2e-04
PRK13298	417	PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Pr	4e-04
COG0617	412	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A)	9e-04
cd02111	365	cd02111, eukary_SO_Moco, molybdopterin binding dom	0.001
pfam00174	144	pfam00174, Oxidored_molyb, Oxidoreductase molybdop	0.001
PRK10885	409	PRK10885, cca, multifunctional tRNA nucleotidyl tr	0.002
cd02112	386	cd02112, eukary_NR_Moco, molybdopterin binding dom	0.004

>gnl|CDD|239029 cd02111, eukary_SO_Moco, molybdopterin binding domain of sulfite oxidase (SO)

 Score =  180 bits (459), Expect = 6e-50
 Identities = 75/130 (57%), Positives = 94/130 (72%), Gaps = 2/130 (1%)

Query: 248 GKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLP-VADAKLKL 306
            ++++SD ES SHWQQNDYKGFSPS DWD VDF+K+PAIQE+PV SAIC P V    + +
Sbjct: 200 DRIVVSDEESDSHWQQNDYKGFSPSVDWDNVDFSKAPAIQEMPVQSAICSPSVGAPVVTV 259

Query: 307 ENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIP 366
              ++ V+GYAWSGGG+ IVRVDV++D GRTW VA    +++  P  R W WTLW AT+P
Sbjct: 260 PPGKITVKGYAWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVP 319

Query: 367 VDPKTKEVSI 376
           V P  KE  I
Sbjct: 320 V-PAGKEAEI 328

SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 365

>gnl|CDD|217537 pfam03404, Mo-co_dimer, Mo-co oxidoreductase dimerisation domain

 Score =  107 bits (270), Expect = 2e-27
 Identities = 32/94 (34%), Positives = 52/94 (55%)

Query: 284 PAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANF 343
            AI +L V SAIC P    ++KL      ++GYA+SGGG+ I RV+V++D G++W +A+ 
Sbjct: 2   YAIYDLNVNSAICSPEHGERVKLGAGTYTIKGYAYSGGGRRITRVEVSLDGGKSWRLADI 61

Query: 344 TGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIM 377
             ++ +    + + W  W   +PV        IM
Sbjct: 62  DYEEDRYRYEKCFCWCFWSLDVPVSELLGAKEIM 95

This domain is found in molybdopterin cofactor (Mo-co) oxidoreductases. It is involved in dimer formation, and has an Ig-fold structure. Length = 130

>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 649 DGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSA 708
           DG + D F G +DL+  V   +GD   R +ED LRILR  RF AR        + E   A
Sbjct: 126 DGEIIDPFGGLKDLENRVLRHIGDASERFREDPLRILRAARFAAR---LGFTIEPETEEA 182

Query: 709 IKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKM----LYQNLLLFSKLKATTMREYI 764
           I+     L  IS ER+W EL K+L     +E +  +      +  +LF +L        +
Sbjct: 183 IRLMAPLLAKISRERLWDELKKLLLSPNPREALQLLREYGALK--ILFPELDKLFGVPKL 240

Query: 765 VELMKYKEKSELIKDFH-KWRLPTFPMNGNIIRQFFARICNN 805
           +  ++  E      D          P            +   
Sbjct: 241 LLALREIELLLHNTDELLLALAALLPAFLLAAATLPLLLRKG 282

Length = 412

>gnl|CDD|239028 cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain

 Score = 85.8 bits (213), Expect = 5e-18
 Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 252 LSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQM 311
           ++D  S  +WQ  DY    P  D   V       I E+PV S I  P +     +   ++
Sbjct: 169 VTDQPSDGYWQTRDYTVPPPDVDA--VGGKARRPIGEMPVKSVITSP-SPGAELVSGGRV 225

Query: 312 EVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKT 371
           E+ G AWSGG   I RV+V++D GRTW  A       + PL     W  W     + P  
Sbjct: 226 EIGGVAWSGGRG-IRRVEVSLDGGRTWQEARL-----EGPLAGPRAWRQWELDWDLPPGE 279

Query: 372 KEV 374
            E+
Sbjct: 280 YEL 282

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). . Length = 317

>gnl|CDD|177772 PLN00177, PLN00177, sulfite oxidase; Provisional

 Score = 83.0 bits (205), Expect = 9e-17
 Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 7/125 (5%)

Query: 256 ESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQG 315
           E    + Q DYK F PS +WD ++++      + PV SAIC  + D    ++  ++ V G
Sbjct: 231 ECQGFFMQKDYKMFPPSVNWDNINWSTRRPQMDFPVQSAIC-SLEDVNA-IKPGKVTVAG 288

Query: 316 YAWSGGGKAIVRVDVTIDQGRTWHVANFTGQD-----SQAPLTRHWGWTLWRATIPVDPK 370
           YA SGGG+ I RVD+++D G+TW  A+   +      S    +  W W L+ AT+ V   
Sbjct: 289 YALSGGGRGIERVDISVDGGKTWVEASRYQKPGVPYISDDISSDKWAWVLFEATVDVPQS 348

Query: 371 TKEVS 375
           T+ V+
Sbjct: 349 TEIVA 353

Length = 393

>gnl|CDD|239030 cd02112, eukary_NR_Moco, molybdopterin binding domain of eukaryotic nitrate reductase (NR)

 Score = 77.8 bits (192), Expect = 5e-15
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 13/153 (8%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVD----FAKSP-AIQELPVISAICLP----V 299
           ++++SD ES +H+  +D +      D +  +    + K    I +L V SAI  P    V
Sbjct: 217 RIVVSDRESQNHYHFHDNRVLPSHVDAELANEEGWWYKPEYIINDLNVNSAITTPAHDEV 276

Query: 300 ADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWT 359
                        ++GYA++GGG+ + RV+V++D G++W +A+    +      + W W 
Sbjct: 277 LPLNGLTTAETYTMKGYAYAGGGRRVTRVEVSLDDGKSWKLASIDYPEDPTKYGKCWCWC 336

Query: 360 LWRATIPVDP--KTKEVSI--MDMLMGKKPHDI 388
            W   +P+      KE+ +   D  M  +P D+
Sbjct: 337 FWSLDVPLSELLAAKEICVRAWDESMNTQPRDM 369

Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 386

>gnl|CDD|201057 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain

 Score = 67.6 bits (166), Expect = 5e-14
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGE-IIMKAAGGSIEPFWAMYGVHL 81
          ++L +++ H +     W+V    VYD+T F++ HPGGE +I+ AAG      +       
Sbjct: 1  FTLEEVKKH-NKDGDCWIVINGKVYDVTRFLKDHPGGEDVILSAAGKDATEAFEDA--IH 57

Query: 82 QDEVFELLESYRIGNI 97
           +   +LLE YR+G +
Sbjct: 58 SEAARKLLEKYRVGEL 73

This family includes heme binding domains from a diverse range of proteins. This family also includes proteins that bind to steroids. The family includes progesterone receptors. Many members of this subfamily are membrane anchored by an N-terminal transmembrane alpha helix. This family also includes a domain in some chitin synthases. There is no known ligand for this domain in the chitin synthases. Length = 74

>gnl|CDD|237339 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional

 Score = 73.3 bits (181), Expect = 1e-13
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 18/141 (12%)

Query: 649 DGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHK--EEVL 706
           +G + D F+G EDLK  +   VG+   R QED LR++R  RF +++           E  
Sbjct: 124 NGEIIDLFDGLEDLKNRLIRAVGNAEERFQEDALRMMRAVRFASQL-----GFDLETETF 178

Query: 707 SAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVE 766
            A+K     L  IS ERI+ E  K+L G F ++ +  ++            T +  Y+  
Sbjct: 179 EAMKTQAPLLEKISVERIFVEFEKLLLGPFWRKGLKLLI-----------ETGLYNYLPG 227

Query: 767 LMKYKEKSELIKDFHKWRLPT 787
           L   +E    +     +   T
Sbjct: 228 LKGKEENLLKLTQLLWFSFET 248

Length = 394

>gnl|CDD|239029 cd02111, eukary_SO_Moco, molybdopterin binding domain of sulfite oxidase (SO)

 Score = 72.0 bits (177), Expect = 3e-13
 Identities = 29/52 (55%), Positives = 36/52 (69%), Gaps = 3/52 (5%)

Query: 470 SLDSADV---QHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRV 518
           +L  A V        EI +KAVDS+YN QPE+   IWNLRGVL+NA+HRV+V
Sbjct: 312 TLWEATVPVPAGKEAEIIAKAVDSAYNVQPETVEPIWNLRGVLNNAWHRVKV 363

SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 365

>gnl|CDD|143388 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 378 DMLMGKKPHDIDFATNA-TPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
           D+L+G+ P DID AT+A  P+  +A+F +   R     GE+ GT    +N     +V
Sbjct: 28  DLLLGRPPKDIDIATDADGPEFAEALFKKIGGRVVG-LGEEFGTATVVING-LTIDV 82

CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are fairly well conserved in this family. Escherichia coli CCAase is related to this group but has not been included in this alignment as this enzyme lacks the N-terminal helix conserved in the remainder of the NT superfamily. Length = 139

>gnl|CDD|239029 cd02111, eukary_SO_Moco, molybdopterin binding domain of sulfite oxidase (SO)

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 28/50 (56%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 433 VKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVE 482
           VK VKGL WG  A+ NA W GARL DVL  AGI  D S       HVH E
Sbjct: 91  VKKVKGLQWGDGAISNAEWGGARLRDVLLDAGIPEDDSQGGL---HVHFE 137

SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 365

>gnl|CDD|216675 pfam01743, PolyA_pol, Poly A polymerase head domain

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
           D+L+G+ P D+D AT+A P+Q+  +F   ++    E G++ GT+     ++   EV
Sbjct: 10  DLLLGRPPKDVDIATDAGPEQVATLFR-NRIIVHLESGKEFGTIHVLFGNQI-LEV 63

This family includes nucleic acid independent RNA polymerases, such as Poly(A) polymerase, which adds the poly (A) tail to mRNA EC:2.7.7.19. This family also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA EC:2.7.7.25. This family is part of the nucleotidyltransferase superfamily. Length = 126

>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH]

 Score = 67.8 bits (166), Expect = 2e-11
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 24/147 (16%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPA--------IQELPVISAICLPVA 300
           ++I++  ES +++   D +      D +    A +          I EL + S I  P  
Sbjct: 289 RIIVTTAESDNYYHYRDNRVLPSHVDAEL---ANAEGWWYKPEYIINELNINSVITTPAH 345

Query: 301 DAKLKLE----NHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHW 356
           D  L +          ++GYA+SGGG+ + RV+V++D G TW + +    +      ++W
Sbjct: 346 DEILPINASTTQRPYTMKGYAYSGGGRKVTRVEVSLDGGETWRLCDLDHPEKPTKYGKYW 405

Query: 357 GWTLWRATIPVDPKTKEVSIMDMLMGK 383
            W  W         + +V ++D+L  K
Sbjct: 406 CWCFW---------SLDVEVLDLLGAK 423

Length = 888

>gnl|CDD|217537 pfam03404, Mo-co_dimer, Mo-co oxidoreductase dimerisation domain

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 2/40 (5%)

Query: 482 EIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIW 521
           EI  +AVD S N QPE     WN+RG+++NA+HRV++ + 
Sbjct: 93  EIMVRAVDESGNVQPEDM--YWNVRGMMNNAWHRVKIHVE 130

This domain is found in molybdopterin cofactor (Mo-co) oxidoreductases. It is involved in dimer formation, and has an Ig-fold structure. Length = 130

>gnl|CDD|177772 PLN00177, PLN00177, sulfite oxidase; Provisional

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 10/81 (12%)

Query: 447 GNATWTGARLVDVLKAAGISPDQSLD---------SADVQHVHVEIWSKAVDSSYNTQPE 497
           G  TW  A          IS D S D         + DV     EI +KAVDS+ N QPE
Sbjct: 307 GGKTWVEASRYQKPGVPYISDDISSDKWAWVLFEATVDVPQ-STEIVAKAVDSAANVQPE 365

Query: 498 SFANIWNLRGVLSNAYHRVRV 518
           S  +IWNLRG+L+ ++HRV++
Sbjct: 366 SVESIWNLRGILNTSWHRVQL 386

Length = 393

>gnl|CDD|239028 cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain

 Score = 55.0 bits (133), Expect = 6e-08
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 10/93 (10%)

Query: 435 PVKGLTW-GHAAV--------GNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWS 485
            + G+ W G   +        G  TW  ARL   L          LD  D+     E+ +
Sbjct: 226 EIGGVAWSGGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELD-WDLPPGEYELVA 284

Query: 486 KAVDSSYNTQPESFANIWNLRGVLSNAYHRVRV 518
           +A DS+ N QPE     WN  G  +N +HRV+V
Sbjct: 285 RATDSTGNVQPERAEWNWNPGGYGNNHWHRVQV 317

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). . Length = 317

>gnl|CDD|221674 pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB- binding site of polymerase A

 Score = 49.7 bits (120), Expect = 7e-08
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 811 EEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHL 861
            E L+AI++    L  IS ERI+ EL K+L        +  + E  +  +L
Sbjct: 6   PETLAAIRELAPLLKKISPERIFEELLKLLLSGHPSRGLELLRETGLLEYL 56

This region encompasses much of the RNA and SrmB binding motifs on polymerase A. Length = 64

>gnl|CDD|227599 COG5274, CYB5, Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 22/115 (19%)

Query: 2   EDGVKALSKLRAGEPISTLPWYSLSDIQNHKDL-------------------KSSIWVVF 42
            DG K  +KL AG+  + L W SL  +Q H D+                       W+V 
Sbjct: 13  SDGPKYTNKLYAGKDHAALDWDSL--VQEHADILNDESPKPITAEEVAKHNKSEDCWIVI 70

Query: 43  RQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNI 97
              VYD+++F+  HPGGE I+K   G  +   A   +H   ++  LL+   +  +
Sbjct: 71  NGKVYDVSQFLDEHPGGEDIIKDTAGK-DATKAFNFLHHSHQIGNLLKDVYVDQV 124

Length = 164

>gnl|CDD|239028 cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain

 Score = 51.9 bits (125), Expect = 7e-07
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 434 KPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPD 468
               G  WGH AVGNA WTG  L D+L+ AG+ P 
Sbjct: 61  PVRSGAQWGHGAVGNARWTGVPLKDLLEEAGVKPG 95

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). . Length = 317

>gnl|CDD|237339 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional

 Score = 52.1 bits (126), Expect = 8e-07
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 6/59 (10%)

Query: 375 SIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
           S+ D L+G+  HD+D AT+A P+++KA+F     RT  + G +HGTV    N  E +EV
Sbjct: 29  SVRDYLLGRPIHDVDIATSAYPEEVKAIFP----RTV-DVGIEHGTVLVLEN-GEEYEV 81

Length = 394

>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH]

 Score = 52.4 bits (126), Expect = 1e-06
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 16/122 (13%)

Query: 23  YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG--EIIMKAAGGSIEPFWAMYGVH 80
           Y++S+++ H + + S W+V    VYD T F++ HPGG   I++ A     E F A   +H
Sbjct: 520 YTMSEVRKH-NSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDA---IH 575

Query: 81  LQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSM 140
             D+  ++LE YRIG +      +     AS      P+ +    +T+     A P P  
Sbjct: 576 -SDKAKKMLEDYRIGEL------VTTGAAASSSASSHPLSAI---STASALAAASPAPGR 625

Query: 141 LV 142
            V
Sbjct: 626 PV 627

Length = 888

>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 6/56 (10%)

Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
           D+L+G+ P D+D ATNATP+++K +F     R     G K GTV     + E  EV
Sbjct: 34  DLLLGRPPKDVDIATNATPEEVKKLFR--NTR---PVGRKFGTVTV-PFNGEIIEV 83

Length = 412

>gnl|CDD|143388 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 898 ITTLRIDVTTD--GRHAEVQFTEDWKLDANRRDLTVNSMFL 936
           + TLR +  TD   R   V FT +   D  RRD T+N+M  
Sbjct: 82  VATLRTETYTDPGRRPPVVGFTIE--EDLLRRDFTINAMAY 120

CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are fairly well conserved in this family. Escherichia coli CCAase is related to this group but has not been included in this alignment as this enzyme lacks the N-terminal helix conserved in the remainder of the NT superfamily. Length = 139

>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH]

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 421 VCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHV- 479
           VCA    KE   VK   G  WG A V  + W G RL DVL+  G+            +V 
Sbjct: 166 VCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVRLRDVLRRCGVMS----RKGGALNVC 221

Query: 480 --HVEIWSKAVDSSYNT 494
               E       S Y T
Sbjct: 222 FEGAEDLPGGGGSKYGT 238

Length = 888

>gnl|CDD|239030 cd02112, eukary_NR_Moco, molybdopterin binding domain of eukaryotic nitrate reductase (NR)

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 19/48 (39%), Positives = 21/48 (43%)

Query: 421 VCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPD 468
           VCA    KE   VK   G  WG A    + WTG RL D+L   G    
Sbjct: 94  VCAGNRRKEQNMVKKTIGFNWGAAGTSTSLWTGVRLSDLLDRCGPKSP 141

Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 386

>gnl|CDD|238198 cd00321, SO_family_Moco, Sulfite oxidase (SO) family, molybdopterin binding domain

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 438 GLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVE 482
           G  WG  AV NA WTG  L D+L+ AG  P         ++V  E
Sbjct: 52  GNRWGGGAVSNAEWTGVPLRDLLEEAGPKP-------GARYVVFE 89

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 156

>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 898 ITTLRIDV-TTDGRHAEVQFTEDWKLDANRRDLTVNSMF 935
           +TT R +    +GR   V F    + D  RRD T+N++ 
Sbjct: 83  VTTFRKEGYGYNGRPLPVVFPGTLEEDLKRRDFTINALA 121

Length = 412

>gnl|CDD|177772 PLN00177, PLN00177, sulfite oxidase; Provisional

 Score = 49.9 bits (119), Expect = 5e-06
 Identities = 23/58 (39%), Positives = 34/58 (58%)

Query: 422 CARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHV 479
           CA        +V+ V+G+ W  +A+GNA W GA+L DVL+  GI    S+ S+  +HV
Sbjct: 98  CAGNRRTAMSKVRKVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTSITSSGGKHV 155

Length = 393

>gnl|CDD|221674 pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB- binding site of polymerase A

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 703 EEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLL 751
            E L+AI+     L  IS ERI+ EL K+L         L++L +  LL
Sbjct: 6   PETLAAIRELAPLLKKISPERIFEELLKLLLSGHPSR-GLELLRETGLL 53

This region encompasses much of the RNA and SrmB binding motifs on polymerase A. Length = 64

>gnl|CDD|130997 TIGR01942, pcnB, poly(A) polymerase

 Score = 49.4 bits (118), Expect = 6e-06
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 648 LDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLS 707
               + DY  G EDLK      +GDP SR QED +R+LR  RF  ++    +   E    
Sbjct: 135 SREVIIDYVGGMEDLKNRRLRLIGDPRSRYQEDPVRMLRALRFSVKLEFTID---ESTAR 191

Query: 708 AIKNNLDGLHNISGERIWTELNKIL 732
            I+ +   L  I   R++ E+ K+L
Sbjct: 192 PIRESAPLLKGIPPARLFEEILKLL 216

This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca). Length = 410

>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional

 Score = 49.7 bits (119), Expect = 6e-06
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 12/130 (9%)

Query: 649 DGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSA 708
           D TV DY  G +DLK+GV   +G+P +R +ED +R+LR  RF A++         E    
Sbjct: 181 DFTVRDYVGGMKDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKL---DMRISPETAEP 237

Query: 709 IKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKM----LYQNLL-----LFSKLKATT 759
           I      L++I   R++ E  K+L   +  E    +    L+Q L       F++   + 
Sbjct: 238 IPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSP 297

Query: 760 MREYIVELMK 769
           M   I +++K
Sbjct: 298 MERIIEQVLK 307

Length = 472

>gnl|CDD|216675 pfam01743, PolyA_pol, Poly A polymerase head domain

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 898 ITTLRID-VTTDGRHA-EVQFTEDWKLDANRRDLTVNSMF 935
           + T R +   +D R+    +FT   + D  RRD T+N++ 
Sbjct: 63  VATFRTESDESDFRNPKSEEFTGTLEEDLKRRDFTINALA 102

This family includes nucleic acid independent RNA polymerases, such as Poly(A) polymerase, which adds the poly (A) tail to mRNA EC:2.7.7.19. This family also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA EC:2.7.7.25. This family is part of the nucleotidyltransferase superfamily. Length = 126

>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 15/26 (57%), Positives = 21/26 (80%)

Query: 378 DMLMGKKPHDIDFATNATPDQMKAMF 403
           D+L+GKKP D D  TNATP+Q++ +F
Sbjct: 78  DLLLGKKPKDFDVTTNATPEQVRKLF 103

Length = 472

>gnl|CDD|239031 cd02113, bact_SoxC_Moco, bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 312 EVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTR---HWGW 358
           E+ G AWSG G+ I RVDV+ D GRTW  A   G      LTR    W W
Sbjct: 228 EISGLAWSGRGR-IRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKW 276

SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 326

>gnl|CDD|239029 cd02111, eukary_SO_Moco, molybdopterin binding domain of sulfite oxidase (SO)

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 124 LKATSLKPYNAEPPPSMLVENFLTPSLLS 152
           LK  S KP+NAEPP S+L  +F+TP+ L 
Sbjct: 2   LKVNSKKPFNAEPPSSLLASSFITPNELF 30

SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 365

>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH]

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 9/61 (14%)

Query: 482 EIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSS------YNTQPEN 535
           EI  +A D S NTQPE    IWNL G+++N + RV+V +  K           + TQP N
Sbjct: 424 EIAVRAWDESMNTQPEKL--IWNLMGMMNNCWFRVKVNV-CKPHKGEIGLVFEHPTQPGN 480

Query: 536 G 536
            
Sbjct: 481 Q 481

Length = 888

>gnl|CDD|177772 PLN00177, PLN00177, sulfite oxidase; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 114 YVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTP 148
           Y  EP R P LK  + +P+NAEPP S LV +++TP
Sbjct: 10  YSQEPPRHPSLKINAKEPFNAEPPRSALVSSYITP 44

Length = 393

>gnl|CDD|237338 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Provisional

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 633 RKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFA 692
           R LT++   +D +    G   D F G +D++  +   V +      ED LR+LR  RF A
Sbjct: 91  RDLTINAIAQDEN----GNYIDPFQGKKDIQLRLLRHVSES---FIEDPLRVLRVARFAA 143

Query: 693 RICNNPNNHKEEVLS----AIKNNLDGLHNISGERIWTELNKIL 732
            + +      +E +      +K +   L  ++ ERIW E  K L
Sbjct: 144 LLVHLGFKIAKETMILMCIMVKKH--ELLYLTPERIWNETEKAL 185

Length = 417

>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]

 Score = 42.4 bits (100), Expect = 9e-04
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 811 EEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHL 861
            E   AI+     L  IS ER+W EL K+L     +E +  + E      L
Sbjct: 177 PETEEAIRLMAPLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKIL 227

Length = 412

>gnl|CDD|239029 cd02111, eukary_SO_Moco, molybdopterin binding domain of sulfite oxidase (SO)

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 27/112 (24%), Positives = 37/112 (33%), Gaps = 24/112 (21%)

Query: 433 VKPVKGLTWGHAAVGNATWTG-----ARLVDVLKAAGISPDQ-SLDSADVQHVHVEIWSK 486
             PV  +  G   V    W+G      R VDV    G +     L+  +        W+ 
Sbjct: 253 GAPVVTVPPGKITVKGYAWSGGGRKIVR-VDVSLDGGRTWKVAELEQEENVWPSGRKWAW 311

Query: 487 AVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHP 538
            +  +    P                      EI +KAVDS+YN QPE   P
Sbjct: 312 TLWEATVPVPAGKE-----------------AEIIAKAVDSAYNVQPETVEP 346

SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 365

>gnl|CDD|215768 pfam00174, Oxidored_molyb, Oxidoreductase molybdopterin binding domain

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 440 TWGHAAVGNATWTGARLVDVLKAAGISPD 468
            W    +GNA WTG  L D+L+ AG  PD
Sbjct: 39  NWS---IGNAEWTGVPLRDLLELAGPKPD 64

This domain is found in a variety of oxidoreductases. This domain binds to a molybdopterin cofactor. Xanthine dehydrogenases, that also bind molybdopterin, have essentially no similarity. Length = 144

>gnl|CDD|182810 PRK10885, cca, multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 649 DGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFAR 693
           DG + D + G  DL+  +   V    +   ED LR+LR  RF AR
Sbjct: 103 DGELIDPYGGQRDLEARLLRHVSPAFA---EDPLRVLRVARFAAR 144

Length = 409

>gnl|CDD|239030 cd02112, eukary_NR_Moco, molybdopterin binding domain of eukaryotic nitrate reductase (NR)

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 482 EIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRV 518
           EI  +A D S NTQP      WN+ G+++N + RV++
Sbjct: 352 EICVRAWDESMNTQPRDM--TWNVMGMMNNCWFRVKI 386

Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	939
KOG0535|consensus	381		100.0
PLN00177	393	sulfite oxidase; Provisional	100.0
cd02111	365	eukary_SO_Moco molybdopterin binding domain of sul	100.0
PLN02252	888	nitrate reductase [NADPH]	100.0
cd02112	386	eukary_NR_Moco molybdopterin binding domain of euk	100.0
cd02114	367	bact_SorA_Moco sulfite:cytochrome c oxidoreductase	100.0
cd02113	326	bact_SoxC_Moco bacterial SoxC is a member of the s	100.0
cd02110	317	SO_family_Moco_dimer Subgroup of sulfite oxidase (	100.0
PRK11623	472	pcnB poly(A) polymerase I; Provisional	100.0
PRK13299	394	tRNA CCA-pyrophosphorylase; Provisional	100.0
TIGR01942	410	pcnB poly(A) polymerase. This model describes the	100.0
COG0617	412	PcnB tRNA nucleotidyltransferase/poly(A) polymeras	100.0
PRK13297	364	tRNA CCA-pyrophosphorylase; Provisional	100.0
TIGR02692	466	tRNA_CCA_actino tRNA adenylyltransferase. The enzy	100.0
PRK13298	417	tRNA CCA-pyrophosphorylase; Provisional	99.98
PRK13296	360	tRNA CCA-pyrophosphorylase; Provisional	99.98
KOG0535|consensus	381		99.98
PRK10885	409	cca multifunctional tRNA nucleotidyl transferase/2	99.97
KOG2159|consensus	416		99.97
PLN00177	393	sulfite oxidase; Provisional	99.96
cd02107	218	YedY_like_Moco YedY_like molybdopterin cofactor (M	99.95
cd02112	386	eukary_NR_Moco molybdopterin binding domain of euk	99.95
cd02111	365	eukary_SO_Moco molybdopterin binding domain of sul	99.94
PLN02252	888	nitrate reductase [NADPH]	99.94
cd02113	326	bact_SoxC_Moco bacterial SoxC is a member of the s	99.94
cd02114	367	bact_SorA_Moco sulfite:cytochrome c oxidoreductase	99.93
cd02110	317	SO_family_Moco_dimer Subgroup of sulfite oxidase (	99.92
cd02108	185	bact_SO_family_Moco bacterial subgroup of the sulf	99.92
PF03404	131	Mo-co_dimer: Mo-co oxidoreductase dimerisation dom	99.91
PRK05363	319	TMAO/DMSO reductase; Reviewed	99.9
cd02109	180	arch_bact_SO_family_Moco bacterial and archael mem	99.88
cd02107	218	YedY_like_Moco YedY_like molybdopterin cofactor (M	99.87
COG2041	271	Sulfite oxidase and related enzymes [General funct	99.83
cd05398	139	NT_ClassII-CCAase Nucleotidyltransferase (NT) doma	99.82
PF00174	169	Oxidored_molyb: Oxidoreductase molybdopterin bindi	99.81
PF01743	126	PolyA_pol: Poly A polymerase head domain; InterPro	99.81
KOG0537|consensus	124		99.79
COG0617	412	PcnB tRNA nucleotidyltransferase/poly(A) polymeras	99.79
TIGR02692	466	tRNA_CCA_actino tRNA adenylyltransferase. The enzy	99.78
PRK13299	394	tRNA CCA-pyrophosphorylase; Provisional	99.77
PRK11623	472	pcnB poly(A) polymerase I; Provisional	99.76
PF00174	169	Oxidored_molyb: Oxidoreductase molybdopterin bindi	99.75
TIGR01942	410	pcnB poly(A) polymerase. This model describes the	99.73
PRK05363	319	TMAO/DMSO reductase; Reviewed	99.71
cd02109	180	arch_bact_SO_family_Moco bacterial and archael mem	99.66
PRK13296	360	tRNA CCA-pyrophosphorylase; Provisional	99.66
cd00321	156	SO_family_Moco Sulfite oxidase (SO) family, molybd	99.64
cd02108	185	bact_SO_family_Moco bacterial subgroup of the sulf	99.64
PF01743	126	PolyA_pol: Poly A polymerase head domain; InterPro	99.63
PHA01806	200	hypothetical protein	99.6
KOG4576|consensus	167		99.59
PF00173	76	Cyt-b5: Cytochrome b5-like Heme/Steroid binding do	99.57
PRK13297	364	tRNA CCA-pyrophosphorylase; Provisional	99.57
cd00321	156	SO_family_Moco Sulfite oxidase (SO) family, molybd	99.56
KOG0536|consensus	145		99.55
PRK13298	417	tRNA CCA-pyrophosphorylase; Provisional	99.55
cd05398	139	NT_ClassII-CCAase Nucleotidyltransferase (NT) doma	99.52
PRK10885	409	cca multifunctional tRNA nucleotidyl transferase/2	99.52
COG2041	271	Sulfite oxidase and related enzymes [General funct	99.41
KOG2159|consensus	416		99.4
PLN03198	526	delta6-acyl-lipid desaturase; Provisional	99.35
PLN03199	485	delta6-acyl-lipid desaturase-like protein; Provisi	99.33
COG5274	164	CYB5 Cytochrome b involved in lipid metabolism [En	99.32
KOG4232|consensus	430		98.85
PRK03381	774	PII uridylyl-transferase; Provisional	98.78
PF12627	64	PolyA_pol_RNAbd: Probable RNA and SrmB- binding si	98.77
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	98.73
PRK00275	895	glnD PII uridylyl-transferase; Provisional	98.67
PRK00227	693	glnD PII uridylyl-transferase; Provisional	98.65
PRK03059	856	PII uridylyl-transferase; Provisional	98.65
PRK05092	931	PII uridylyl-transferase; Provisional	98.35
COG4892	81	Predicted heme/steroid binding protein [General fu	98.19
PHA01806	200	hypothetical protein	98.08
PRK01759	854	glnD PII uridylyl-transferase; Provisional	98.01
PRK05007	884	PII uridylyl-transferase; Provisional	97.95
PRK04374	869	PII uridylyl-transferase; Provisional	96.9
COG3915	155	Uncharacterized protein conserved in bacteria [Fun	96.0
KOG1110|consensus	183		95.49
COG3915	155	Uncharacterized protein conserved in bacteria [Fun	94.31
PF02012	12	BNR: BNR/Asp-box repeat; InterPro: IPR002860 Membe	94.06
PF14901	94	Jiv90: Cleavage inducing molecular chaperone	84.74

>KOG0535|consensus

Probab=100.00  E-value=1.9e-74  Score=598.75  Aligned_cols=299  Identities=43%  Similarity=0.754  Sum_probs=276.8

Q ss_pred             CCCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHH
Q psy11686        112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKL  180 (939)
Q Consensus       112 d~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~  180 (939)
                      |+|+.||+|||.|++++.+|||||||++.|.++|+||+++||+||           |+|+|. |++.+ |.+||++||+ 
T Consensus         7 d~~s~dp~Rhp~Lkv~~k~PFNAE~P~~~L~~~fiTP~~LfyvRNH~pVP~~~~~~~~l~v~-g~~~~-~~~lt~d~l~-   83 (381)
T KOG0535|consen    7 DEYSQDPERHPALKVNSKRPFNAEPPPSLLTEHFITPNPLFYVRNHLPVPKIDPEDYSLEVT-GLGGK-PRKLTLDDLK-   83 (381)
T ss_pred             cccccCcccCcceeccCCCCCCCCCChhHHHhhccCCcceeEeeccCCCCccCchhcEEEEE-ecCCC-CceeeHHHhh-
Confidence            788999999999999999999999999999999999999999999           999999 99998 9999999999 


Q ss_pred             hccc-------eeccccCccCc---------------------cccHHHHHhCCCCC----------------C------
Q psy11686        181 KLVK-------VMAGNISQEDS---------------------KLAAKDIASDPYVM----------------E------  210 (939)
Q Consensus       181 ~~p~-------~C~gn~~~~~~---------------------~~~~~~vL~~~g~~----------------d------  210 (939)
                      ++|+       ||+||+|++++                     |++++|||+++|+.                |      
T Consensus        84 s~~k~~vtatl~CaGNRR~emn~vK~vkGl~W~~~aisna~W~GarL~DvL~~~Gi~~~~~~a~hV~Fegad~d~tg~pY  163 (381)
T KOG0535|consen   84 SLPKYEVTATLQCAGNRRSEMNKVKKVKGLNWGSGAISNAVWGGARLCDVLRRAGIQSRETKALHVCFEGADDDPTGTPY  163 (381)
T ss_pred             hhccccceEEEEecCccHHHHhhHhhhccccccccccccceecCccHHHHHHHhCCCcccCcceEEEEeccccCCCCCcc
Confidence            6776       99999997654                     44469999999975                1      


Q ss_pred             CCCcchhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCC
Q psy11686        211 PVRSPLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWD  276 (939)
Q Consensus       211 ~~~ipl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~  276 (939)
                      +.|||+++||++       |+|||||||++ |||+|+||||      ||||++|.|+.+|+++|||++|||.++|.++++
T Consensus       164 gaSI~l~~A~dp~~dVilAY~mNge~L~rDHGfPvRVIVPG~vGaR~VKWL~rIiV~~kESds~~~qkDyk~f~psvd~d  243 (381)
T KOG0535|consen  164 GASIPLEKAMDPEADVILAYEMNGEPLPRDHGFPVRVIVPGVVGARMVKWLKRIIVTPKESDSHWQQKDYKGFSPSVDWD  243 (381)
T ss_pred             cccccHhhhcCcccceEEeeeecCccCCCCCCCceEEEecccccchhhhhhhheeeccccccchhhhcccccCCCccCcc
Confidence            247999999999       99999999999 9999999999      999999999999999999999999999999999


Q ss_pred             CccCCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCce
Q psy11686        277 TVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHW  356 (939)
Q Consensus       277 ~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~  356 (939)
                      +.+|...++|+++||+|+||.|.++..|.+.+++++|+|||||||||+|+|||||+|||+||+.|++++.+.|..+ +.|
T Consensus       244 ~~~w~~~p~iqe~pVqsaIctp~~~~~V~~~~~~vtikGYA~SGGGr~i~RVdvslDgG~tW~v~eldqee~~~~~-~~w  322 (381)
T KOG0535|consen  244 EVDWSSKPSIQELPVQSAICTPEDGLPVKAFDGPVTIKGYAWSGGGRKIIRVDVSLDGGETWNVAELDQEEKPDKY-KFW  322 (381)
T ss_pred             ccccccCchhhhcCcceeecccCCCceeccCCCceEEEEEEEeCCCceEEEEEEEecCCceeeeeeccccccCCcc-ceE
Confidence            9999999999999999999999999999876689999999999999999999999999999999999998876322 789


Q ss_pred             eEEEeEEEeecCCCCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcceeeccCCCCCCCccccCCC
Q psy11686        357 GWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPV  436 (939)
Q Consensus       357 ~W~~W~~~~~~~~~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~  436 (939)
                      ||++|+++++++++..+                                                               
T Consensus       323 ~W~lw~a~v~V~~~~~~---------------------------------------------------------------  339 (381)
T KOG0535|consen  323 AWCLWSAEVPVSDGQKE---------------------------------------------------------------  339 (381)
T ss_pred             EEEEEEecccccccchh---------------------------------------------------------------
Confidence            99999999998775421                                                               


Q ss_pred             CCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCCCCCCCCcceeecceeeEE
Q psy11686        437 KGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRV  516 (939)
Q Consensus       437 ~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~~~~g~p~R~vvp~~~~~~  516 (939)
                                                                  +.+++||+|+.+|.||...++.||||+|+.|.||++
T Consensus       340 --------------------------------------------~~I~akAvD~a~NvQPe~~~~IWNlrGvl~nawhRV  375 (381)
T KOG0535|consen  340 --------------------------------------------KNIIAKAVDSAYNVQPETVESIWNLRGVLNNAWHRV  375 (381)
T ss_pred             --------------------------------------------hhhHHHhhhhhhcCCcchhhhhhhHHHHhhhheeEE
Confidence                                                        445689999999999999999999999999999999


Q ss_pred             EEEEe
Q psy11686        517 RVEIW  521 (939)
Q Consensus       517 ~i~~~  521 (939)
                      ++.|.
T Consensus       376 ~~~v~  380 (381)
T KOG0535|consen  376 KVNVC  380 (381)
T ss_pred             Eeeec
Confidence            98875

>PLN00177 sulfite oxidase; Provisional

Probab=100.00  E-value=3.9e-61  Score=542.27  Aligned_cols=296  Identities=33%  Similarity=0.543  Sum_probs=264.2

Q ss_pred             CCCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee------------EEEEEeecccCCcceeeeHHHHH
Q psy11686        112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS------------STITLDQAIVSKQLSSFKHSDEK  179 (939)
Q Consensus       112 d~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~------------w~l~v~~G~v~~~p~~~t~~dl~  179 (939)
                      .++..+|.|++.|++++.+|+|+|||++.|.+++|||+++||+||            |+|+|+ |+|++ |++||++||+
T Consensus         8 ~~~~~~p~r~~~l~~~~~~P~n~E~p~~~L~~~~iTP~~~ffvR~h~~~P~~~d~~~w~L~V~-G~V~~-p~~ltl~dL~   85 (393)
T PLN00177          8 SDYSQEPPRHPSLKINAKEPFNAEPPRSALVSSYITPVDLFYKRNHGPIPIVDDIERYSVTIT-GLIEN-PRKLSMKDIR   85 (393)
T ss_pred             CccccCCCCCCceEECCCCCCcCCCChHHhccCCcCCCcceEEECCCCCCCcCCCCceEEEEE-eecCC-CeEeeHHHHh
Confidence            678899999999999999999999999999889999999999998            999999 99998 9999999999


Q ss_pred             Hhccc-------eeccccCc---------------------cCccccHHHHHhCCCCC------------------C---
Q psy11686        180 LKLVK-------VMAGNISQ---------------------EDSKLAAKDIASDPYVM------------------E---  210 (939)
Q Consensus       180 ~~~p~-------~C~gn~~~---------------------~~~~~~~~~vL~~~g~~------------------d---  210 (939)
                       +||+       +|+||+|+                     +|+|++++|||++||++                  |   
T Consensus        86 -~~p~~~~~~~l~C~GN~R~~~~~~~~~~G~~W~~gaig~a~WtGv~L~dvL~~aG~~~~~~~~~~~a~~v~f~g~d~~~  164 (393)
T PLN00177         86 -KLPKYNVTATLQCAGNRRTAMSKVRKVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTSITSSGGKHVEFVSVDKCK  164 (393)
T ss_pred             -cCCCEEEEEEEEecCCCccceeecccccccCcccceeecCeEECcCHHHHHHHcCCCccccccCCCceEEEEEEecccc
Confidence             8999       99999864                     56677789999999972                  1   


Q ss_pred             -------CCCcchhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCcc
Q psy11686        211 -------PVRSPLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGF  269 (939)
Q Consensus       211 -------~~~ipl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~  269 (939)
                             ..||||++|+++       |+|||||||++ ||||||||||      ||||++|+|++++++||||+++|+++
T Consensus       165 ~~~~~~y~~sipl~~a~~~~~d~lLAy~mNGepLp~~hG~PlRLvvPg~~G~~svKWL~~I~v~~~~~~g~w~~~~Y~~~  244 (393)
T PLN00177        165 EENGGPYKASIPLSQATNPEADVLLAYEMNGEVLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFMQKDYKMF  244 (393)
T ss_pred             ccCCCCcEEeEEHHHhhCcccCeEEEEeeCCeECchhcCCceEEEeCCEeeeeceEEeeEEEEEecCCCCcceecccccC
Confidence                   125999999974       99999999999 9999999999      99999999999999999999999999


Q ss_pred             CCCCCCCCccCCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCC-
Q psy11686        270 SPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDS-  348 (939)
Q Consensus       270 ~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~-  348 (939)
                      ++..+.....|.+.++|++|+|||+||.|.+++.++  .++++|+||||||+|++|+|||||+|||+||++|+|..+.. 
T Consensus       245 ~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~i~--~g~~~i~G~Awsggg~~I~rVEVS~DgG~tW~~A~l~~~~~~  322 (393)
T PLN00177        245 PPSVNWDNINWSTRRPQMDFPVQSAICSLEDVNAIK--PGKVTVAGYALSGGGRGIERVDISVDGGKTWVEASRYQKPGV  322 (393)
T ss_pred             CCCCCccccCccccCcceeecCCeEEecCCCCCccc--CceEEEEEEEECCCCccEEEEEEEcCCCCCceeeeecccccc
Confidence            888877766777788999999999999999999997  57899999999998889999999999999999999975421 


Q ss_pred             ----CCCCCCceeEEEeEEEeecCCCCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcceeeccCC
Q psy11686        349 ----QAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCAR  424 (939)
Q Consensus       349 ----~~~~~~~~~W~~W~~~~~~~~~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l~Cag  424 (939)
                          .....++|+|++|+++|.. ++.                                                     
T Consensus       323 ~~~~~~~~~~~~aW~~w~~~~~~-~g~-----------------------------------------------------  348 (393)
T PLN00177        323 PYISDDISSDKWAWVLFEATVDV-PQS-----------------------------------------------------  348 (393)
T ss_pred             ccccccccCCccEEEEEEEEecC-CCC-----------------------------------------------------
Confidence                1123578999999999852 222                                                     


Q ss_pred             CCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCCCCCCCC
Q psy11686        425 MNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWN  504 (939)
Q Consensus       425 n~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~~~~g~p  504 (939)
                                                                              .+++++|+|..+|.||......||
T Consensus       349 --------------------------------------------------------~~l~~RA~D~~G~~QP~~~~~~wN  372 (393)
T PLN00177        349 --------------------------------------------------------TEIVAKAVDSAANVQPESVESIWN  372 (393)
T ss_pred             --------------------------------------------------------eEEEEEEEcCCCCCCCCCCcCCcC
Confidence                                                                    445689999999999998777899


Q ss_pred             cceeecceeeEEEEEEec
Q psy11686        505 LRGVLSNAYHRVRVEIWS  522 (939)
Q Consensus       505 ~R~vvp~~~~~~~i~~~~  522 (939)
                      +|+++.|+|++++|+|..
T Consensus       373 ~~Gy~~n~~~rv~v~v~~  390 (393)
T PLN00177        373 LRGILNTSWHRVQLRVGH  390 (393)
T ss_pred             CCCcccccEEEEEEEEee
Confidence            999999999999998854

>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO)

Probab=100.00  E-value=5.1e-58  Score=514.35  Aligned_cols=244  Identities=44%  Similarity=0.737  Sum_probs=218.5

Q ss_pred             cccccCCCCCCCCCCCccccccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHHhccc-------e
Q psy11686        124 LKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKLKLVK-------V  185 (939)
Q Consensus       124 l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~  185 (939)
                      |++++.+|+|+|||++.|.+++|||++.||+||           |+|+|+ |+|++ |++||++||++.||+       +
T Consensus         2 l~~~~~~P~n~E~p~~~l~~~~iTP~~~~yvr~h~~~P~~d~~~w~L~V~-G~V~~-p~~ltl~dL~~~~p~~~~~~~l~   79 (365)
T cd02111           2 LKVNSKKPFNAEPPSSLLASSFITPNELFYVRNHLPVPVVDPDTYSLEVE-GPDGT-TLSLSLEDLKSLFPKHEVTATLQ   79 (365)
T ss_pred             ceEcCCCCCcCCCChHHhCcCCcCCCCceEEECCCCCCccCccccEEEEE-eecCC-CcEEeHHHHHhhCCcEEEEEEEE
Confidence            578899999999999999978999999999998           999999 99998 999999999944599       9


Q ss_pred             eccccC---------------------ccCccccHHHHHhCCCCCC---------------------C--CCcchhhhcC
Q psy11686        186 MAGNIS---------------------QEDSKLAAKDIASDPYVME---------------------P--VRSPLLKATS  221 (939)
Q Consensus       186 C~gn~~---------------------~~~~~~~~~~vL~~~g~~d---------------------~--~~ipl~~a~~  221 (939)
                      |+||+|                     .+|+|++++|||++||+++                     .  .||||++||+
T Consensus        80 C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aGv~~~~~~~a~~V~~~~~d~~~~~~~y~~sipl~~a~~  159 (365)
T cd02111          80 CAGNRRSEMTKVKKVKGLQWGDGAISNAEWGGARLRDVLLDAGIPEDDSQGGLHVHFEGLDVDPTGTPYGASIPLSKALD  159 (365)
T ss_pred             ecCCCchhccccccccCCCccCCcEEeeEEECcCHHHHHHHhCCCCccCCCceEEEEEecCCCCCCCCeeeeeEHHHhhC
Confidence            999975                     4567788999999999752                     2  2599999998


Q ss_pred             --C-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCCccCCCCCCcc
Q psy11686        222 --L-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQ  287 (939)
Q Consensus       222 --~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~~~~~~~~~i~  287 (939)
                        +     |+|||||||++ ||||||||||      ||||++|+|++++++||||++||+++++..+.....|.+..+|+
T Consensus       160 p~~~~lLA~~mNGepL~~~hG~PlRLvvPg~~G~~~vKWl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~~~~~~~~~~~i~  239 (365)
T cd02111         160 PEADVLLAYEMNGTPLPRDHGFPLRVVVPGVVGARSVKWLDRIVVSDEESDSHWQQNDYKGFSPSVDWDNVDFSKAPAIQ  239 (365)
T ss_pred             cCCCeEEEehhcCCCCccccCccEEEEeCCeeEEEEEEEeeEEEEeccCCCCcceecceeecCCCCCccccCccccCcee
Confidence              3     99999999999 9999999999      99999999999999999999999998777766555677778999


Q ss_pred             cccceEEEEecCCCCe---eccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeEEEeEEE
Q psy11686        288 ELPVISAICLPVADAK---LKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRAT  364 (939)
Q Consensus       288 ~~~v~S~I~~P~~~~~---~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W~~W~~~  364 (939)
                      +|++||+|+.|.+|+.   +.  ++.++|+||||+|||++|+|||||+|||+||++|+|.++..+.+++++|||++|+++
T Consensus       240 ~~~v~S~I~~P~~~~~~~~~~--~~~~~i~G~A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~  317 (365)
T cd02111         240 EMPVQSAICSPSVGAPVVTVP--PGKITVKGYAWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEAT  317 (365)
T ss_pred             eeccCEEEecCCCCCeeeccC--CceEEEEEEEECCCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEE
Confidence            9999999999999984   33  579999999999888899999999999999999999988765556778999999999


Q ss_pred             eecCCCC
Q psy11686        365 IPVDPKT  371 (939)
Q Consensus       365 ~~~~~~~  371 (939)
                      |++++++
T Consensus       318 ~~~~~~g  324 (365)
T cd02111         318 VPVPAGK  324 (365)
T ss_pred             EEeCCCC
Confidence            9887654

SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>PLN02252 nitrate reductase [NADPH]

Probab=100.00  E-value=7.5e-57  Score=552.69  Aligned_cols=310  Identities=29%  Similarity=0.474  Sum_probs=264.9

Q ss_pred             Ccc-ccccccCCCCCCCCCCCcccc-ccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHHhccc--
Q psy11686        120 RSP-LLKATSLKPYNAEPPPSMLVE-NFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKLKLVK--  184 (939)
Q Consensus       120 r~p-~l~v~~~~P~n~e~p~~~l~~-~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~~~p~--  184 (939)
                      |+| ++++++.+|||+|||++.|.+ ++|||+++|||||           |+|+|+ |+|++ |++|||+||+ +||+  
T Consensus        84 r~~~li~~~~~~P~n~E~p~~~L~~~~~iTP~~~~yVRnH~~vP~~~~~~w~l~V~-G~V~~-p~~ltl~dL~-~~p~~~  160 (888)
T PLN02252         84 RHPSLVRLTGKHPFNCEPPLARLMEHGFITPAPLHYVRNHGAVPRADWDEWTVEVT-GLVKR-PARLTMDELV-RFPARE  160 (888)
T ss_pred             CCccceEEcCCCCCcCCCChHHhccCCCcCCCcceEEECCCCCCccCCCCeEEEEe-eecCC-CeEeeHHHHh-hCCCee
Confidence            555 668888999999999999984 7999999999999           999999 99998 9999999999 6999  


Q ss_pred             -----eeccccCc---------------------cCccccHHHHHhCCCCC--------------C----------CCCc
Q psy11686        185 -----VMAGNISQ---------------------EDSKLAAKDIASDPYVM--------------E----------PVRS  214 (939)
Q Consensus       185 -----~C~gn~~~---------------------~~~~~~~~~vL~~~g~~--------------d----------~~~i  214 (939)
                           +|+||+|+                     .|+|++++|||+.||+.              |          .+||
T Consensus       161 ~~~~l~C~gN~r~~~~~~~~~~G~~Wg~gavs~~~W~GV~L~dlL~~ag~~~~~~~a~~V~f~g~d~~~~~~~~~y~~si  240 (888)
T PLN02252        161 LPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVRLRDVLRRCGVMSRKGGALNVCFEGAEDLPGGGGSKYGTSI  240 (888)
T ss_pred             EEEEEEeCCCCcccccccccccccCccccccccceEeceEHHHHHHHcCCCCCCCCceEEEEEcccccccCCCCCceeee
Confidence                 99999985                     46788899999999974              1          1469


Q ss_pred             chhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCCc--
Q psy11686        215 PLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTV--  278 (939)
Q Consensus       215 pl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~~--  278 (939)
                      ||++||++       |+|||||||++ ||||||||||      ||||++|+|++++++||||.++|+++|+.++.+..  
T Consensus       241 pl~~a~d~~~dvlLAy~mNGepL~~~hG~PvRlvvPG~~G~~~vKWl~~I~v~~~~~~~~~~~~d~r~~p~~~~~~~~~~  320 (888)
T PLN02252        241 TLERAMDPARDVILAYMQNGEPLTPDHGFPVRLIIPGFIGGRMVKWLKRIIVTTAESDNYYHYRDNRVLPSHVDAELANA  320 (888)
T ss_pred             eHHHHhCcCCCeEEEEeeCCeECCccCCceEEEeCCCceeeeeeeEeeEEEEEeCCCCCceeecccccCCCccccccccc
Confidence            99999984       99999999999 9999999999      99999999999999999999999998877654322  


Q ss_pred             -cC--CCCCCcccccceEEEEecCCCCeeccC----CcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCC
Q psy11686        279 -DF--AKSPAIQELPVISAICLPVADAKLKLE----NHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAP  351 (939)
Q Consensus       279 -~~--~~~~~i~~~~v~S~I~~P~~~~~~~~~----~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~  351 (939)
                       .|  ....+|++|+|||+|+.|.+++.+.+.    +++++|+||||+|||++|+|||||+|||+||+.|+|..+..+..
T Consensus       321 ~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~~~~~i~G~A~sggg~~I~rVEVS~DgG~tW~~a~l~~~~~~~~  400 (888)
T PLN02252        321 EGWWYKPEYIINELNINSVITTPAHDEILPINASTTQRPYTMKGYAYSGGGRKVTRVEVSLDGGETWRLCDLDHPEKPTK  400 (888)
T ss_pred             ccccccCCccceeeccceEEecCCCCCEecccccCCCceEEEEEEEECCCCCceEEEEEEcCCCCcceeCccCCCCCccc
Confidence             22  234589999999999999999999753    46899999999999999999999999999999999998876656


Q ss_pred             CCCceeEEEeEEEeecCCCCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcceeeccCCCCCCCcc
Q psy11686        352 LTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENF  431 (939)
Q Consensus       352 ~~~~~~W~~W~~~~~~~~~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l~Cagn~r~~~~  431 (939)
                      +++.|||++|+++|++++..+.                                                          
T Consensus       401 ~g~~~~W~~W~~~~~~~~~~g~----------------------------------------------------------  422 (888)
T PLN02252        401 YGKYWCWCFWSLDVEVLDLLGA----------------------------------------------------------  422 (888)
T ss_pred             cCCccEEEEEEEeEecccCCCc----------------------------------------------------------
Confidence            6778999999999986432110                                                          


Q ss_pred             ccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCCCCCCCCcceeecc
Q psy11686        432 EVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSN  511 (939)
Q Consensus       432 ~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~~~~g~p~R~vvp~  511 (939)
                                                                       ..++++|+|..+|.||...  .||+|+++.|
T Consensus       423 -------------------------------------------------~~i~vRA~D~~g~~QP~~~--~wN~~G~~nN  451 (888)
T PLN02252        423 -------------------------------------------------KEIAVRAWDESMNTQPEKL--IWNLMGMMNN  451 (888)
T ss_pred             -------------------------------------------------eEEEEEEEcCCCCcCCCCC--ccCcCceEEe
Confidence                                                             4456899999999999864  6999999999


Q ss_pred             eeeEEEEEEecCCc-----CceeecCCCCCCCCCCc
Q psy11686        512 AYHRVRVEIWSKAV-----DSSYNTQPENGHPSGYQ  542 (939)
Q Consensus       512 ~~~~~~i~~~~~~~-----~~~y~~~~~~~~~~~~~  542 (939)
                      .|++++|+|.....     ...+.+.|+.+ +++||
T Consensus       452 ~~~rv~v~v~~~~~~~~~~~f~hp~~~~~~-~ggwm  486 (888)
T PLN02252        452 CWFRVKVNVCKPHKGEIGLVFEHPTQPGNQ-SGGWM  486 (888)
T ss_pred             eEEEEEEEEeeccCCcceEEEeCCCCccCC-CCCcc
Confidence            99999999865432     44555677665 34554

>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR)

Probab=100.00  E-value=1.4e-56  Score=504.84  Aligned_cols=247  Identities=26%  Similarity=0.426  Sum_probs=213.9

Q ss_pred             Ccccc-ccccCCCCCCCCCCCcc-ccccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHHhccc--
Q psy11686        120 RSPLL-KATSLKPYNAEPPPSML-VENFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKLKLVK--  184 (939)
Q Consensus       120 r~p~l-~v~~~~P~n~e~p~~~l-~~~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~~~p~--  184 (939)
                      |+|.+ ++++.+|+|+|||++.| .+++|||+++||+||           |+|+|+ |+|++ |++||++||++.||+  
T Consensus        11 r~~~li~~~~~~p~n~e~p~~~l~~~~~iTP~~~~yvr~h~~~P~id~~~w~L~V~-G~V~~-p~~ltl~dL~~~~p~~~   88 (386)
T cd02112          11 RDPRLIRLTGKHPFNSEPPLTELMDHGFITPSNLHYVRNHGPVPREKWEDWTVEVT-GLVEK-PTTLTMDELVAMFPSVT   88 (386)
T ss_pred             CCcceEEEcCCCCCcCCCChHHhcccCCcCCccceEEEcCCCCCcccCCCcEEEEE-eecCC-CeEEeHHHHHhcCCceE
Confidence            77755 77777999999999986 468999999999998           999999 99998 999999999943598  


Q ss_pred             -----eeccccCc---------------------cCccccHHHHHhCCCCCC---C-------------------C--Cc
Q psy11686        185 -----VMAGNISQ---------------------EDSKLAAKDIASDPYVME---P-------------------V--RS  214 (939)
Q Consensus       185 -----~C~gn~~~---------------------~~~~~~~~~vL~~~g~~d---~-------------------~--~i  214 (939)
                           +|+||+|+                     +|+|++++|||++||+..   .                   +  ||
T Consensus        89 ~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~WtGV~L~dlLe~aG~~~~~~~a~~V~~~g~D~~~~~~~~~y~~sl  168 (386)
T cd02112          89 FPVTLVCAGNRRKEQNMVKKTIGFNWGAAGTSTSLWTGVRLSDLLDRCGPKSPKGGARHVCFEGADDLLPGPNGKYGTSI  168 (386)
T ss_pred             EEEEEEcCCCCcccccccccccCcCcccccceEeEEEeeEHHHHHHHcCCCCccCCceEEEEEccCcccccCCCCcEeee
Confidence                 99999874                     678888999999999753   1                   2  69


Q ss_pred             chhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCCcc-
Q psy11686        215 PLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVD-  279 (939)
Q Consensus       215 pl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~~~-  279 (939)
                      ||++||++       |+|||||||++ ||||||||||      ||||++|+|++++++||||+.+|+++++..+..... 
T Consensus       169 pl~~al~~~~dvlLAy~mNGepLp~~hG~PlRlvVPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~  248 (386)
T cd02112         169 TLSWAMDPSKDVMLAYKQNGELLHPDHGFPVRLIIPGQIGGRMVKWLKRIVVSDRESQNHYHFHDNRVLPSHVDAELANE  248 (386)
T ss_pred             EHHHhhCcCCCeEEEEeeCCeECCccCCcEEEEEeCCccceeeeeEeEEEEEEecCCCCceeecccccCCcccCcccccc
Confidence            99999983       99999999999 9999999999      999999999999999999999999987665443221 


Q ss_pred             ---CC-CCCCcccccceEEEEecCCCCeec----cCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCC
Q psy11686        280 ---FA-KSPAIQELPVISAICLPVADAKLK----LENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAP  351 (939)
Q Consensus       280 ---~~-~~~~i~~~~v~S~I~~P~~~~~~~----~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~  351 (939)
                         |. ...+|++|+|+|+|+.|.+++.+.    ..+++++|+||||||+|++|+|||||+|||+||++|+|.++..+..
T Consensus       249 ~~~w~~~~~~i~~~~v~S~I~~P~~~~~v~~~~~~~~~~~~i~G~A~sg~g~~I~rVeVS~DgG~tW~~A~L~~~~~~~~  328 (386)
T cd02112         249 EGWWYKPEYIINDLNVNSAITTPAHDEVLPLNGLTTAETYTMKGYAYAGGGRRVTRVEVSLDDGKSWKLASIDYPEDPTK  328 (386)
T ss_pred             ccccccCCceeeeeccCeEEeccCCCCEeeccccCCCCeEEEEEEEEcCCCCcEEEEEEEcCCCCCceeCCCCCCCCccc
Confidence               33 345899999999999999999982    1267999999999998889999999999999999999987665434


Q ss_pred             CCCceeEEEeEEEeecC
Q psy11686        352 LTRHWGWTLWRATIPVD  368 (939)
Q Consensus       352 ~~~~~~W~~W~~~~~~~  368 (939)
                      ++++|||++|+++|+++
T Consensus       329 ~~~~~aW~~W~~~~~~~  345 (386)
T cd02112         329 YGKCWCWCFWSLDVPLS  345 (386)
T ss_pred             cCCCCEeEEEEEeeecc
Confidence            45689999999999765

Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain

Probab=100.00  E-value=6.6e-56  Score=497.66  Aligned_cols=247  Identities=22%  Similarity=0.288  Sum_probs=213.3

Q ss_pred             CCCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee-------------EEEEEeecccCCcceeeeHHHH
Q psy11686        112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS-------------STITLDQAIVSKQLSSFKHSDE  178 (939)
Q Consensus       112 d~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~-------------w~l~v~~G~v~~~p~~~t~~dl  178 (939)
                      .+....|.++++++++ .+|+|+|+|++.|.+++|||++.||+||             |+|+|+ |+|++ |++||++||
T Consensus         8 ~~~~~~~~~~~li~~~-~~p~n~e~p~~~l~~~~iTP~~~~fvr~h~~~~p~~~d~~~w~L~V~-G~V~~-p~~~tl~dL   84 (367)
T cd02114           8 RELVPFPQKRPLIRLT-TRPPHLETPFSVFNEGLITPNDAFFVRYHLAGIPLDIDPDAYTLTID-GKVRT-PLTLSLAEL   84 (367)
T ss_pred             cccccCCCCCCceEec-CCCCcCCCCHHHhCcCCcCCCCcceEEcCCCCCCccccCCCcEEEEe-EEeCC-CeEEEHHHH
Confidence            3445567788877666 4899999999999888999999999997             999999 99998 999999999


Q ss_pred             HHhccc-------eeccccC-------------------ccCccccHHHHHhCCCCC-----------CC----------
Q psy11686        179 KLKLVK-------VMAGNIS-------------------QEDSKLAAKDIASDPYVM-----------EP----------  211 (939)
Q Consensus       179 ~~~~p~-------~C~gn~~-------------------~~~~~~~~~~vL~~~g~~-----------d~----------  211 (939)
                      ++.||+       +|+||+|                   .+|+|+++++||++||+.           |.          
T Consensus        85 ~~~~p~~~~~~~l~C~gN~r~~~~~~~~G~~W~~G~i~~a~WtGV~L~dlL~~aG~~~~a~~V~f~g~D~~~~~~~~~y~  164 (367)
T cd02114          85 KRIEPRFEVVAVNQCSGNSRGFFQPRVQGAQLANGAMGNARWAGVPLKAVLAKAGVQDGARQVAFRGLDQPVLDVTPDFV  164 (367)
T ss_pred             hhcCCceEEEEEEEECCCCcccccccccCCCcccceEEeeEEEeeEHHHHHHHcCCCCCCcEEEEEecCCccccCCCCeE
Confidence            943598       9999976                   367889999999999975           21          


Q ss_pred             CCcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCC-C-C
Q psy11686        212 VRSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDW-D-T  277 (939)
Q Consensus       212 ~~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~-~-~  277 (939)
                      .||||++|+++     |+|||||||++ ||||||||||      ||||++|+|++++++||||+++|+++++.... . .
T Consensus       165 ~sipl~~a~~~~~lLAy~mNGepL~~~hG~PlRlvvPg~~g~~~vKwl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~~~~g  244 (367)
T cd02114         165 KSLDIDHALDGEVMLAWEMNGEPLPVLNGYPLRLVVPGFYATYWVKHLSHITVLDKEFDGFWASQAYRIPDNADAGVEPG  244 (367)
T ss_pred             EeeeHHHhcCCCeEEEEeeCCeECCHHhCCceEEEecCEeeeeeeEeeeEEEEEecCCCCceeecccccCCCcccccCCc
Confidence            36999999987     99999999999 9999999999      99999999999999999999999986543111 1 1


Q ss_pred             ccCCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCcee
Q psy11686        278 VDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWG  357 (939)
Q Consensus       278 ~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~  357 (939)
                      ..+.+..+|++|+|||+|+.|.+|+.+.. +++++|+||||+| |++|+|||||+|||+||++|+|.++.      ++|+
T Consensus       245 ~~~~~~~~i~~~~v~S~I~~P~~~~~~~~-~~~~~i~G~A~~G-~~~I~rVEVS~DgG~tW~~A~l~~~~------~~~a  316 (367)
T cd02114         245 TAPDRTAPINRFKVRSFITSLENGAIVAP-AGELALRGIAFDG-GSGIRRVDVSADGGDSWTQATLGPDL------GRFS  316 (367)
T ss_pred             ccccccceeeeeecceEEecCCCCCEecC-CCeEEEEEEEEcC-CCCEEEEEEEeCCCCcceEeEeCCCC------CCcE
Confidence            11335679999999999999999998875 6799999999998 56899999999999999999997754      5799


Q ss_pred             EEEeEEEeecCC
Q psy11686        358 WTLWRATIPVDP  369 (939)
Q Consensus       358 W~~W~~~~~~~~  369 (939)
                      |++|+++|+++.
T Consensus       317 W~~W~~~~~~~~  328 (367)
T cd02114         317 FRGWKLTLDGVK  328 (367)
T ss_pred             EEEEEEEEECCC
Confidence            999999998764

SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=100.00  E-value=2.1e-50  Score=445.03  Aligned_cols=233  Identities=24%  Similarity=0.263  Sum_probs=205.0

Q ss_pred             CCCccccccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHHhccc-------eeccccCc------
Q psy11686        137 PPSMLVENFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNISQ------  192 (939)
Q Consensus       137 p~~~l~~~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~~~------  192 (939)
                      |++.| +++|||++.||+||           |+|+|+ |+|++ |++||++||+ +||+       +|+||+|+      
T Consensus         1 p~~~l-~~~iTP~~~~fvr~h~~~P~~d~~~w~L~V~-G~V~~-p~~ltl~dL~-~~p~~~~~~~l~C~gn~r~~~~~~~   76 (326)
T cd02113           1 PLQDL-EGIITPNGLHFERHHGGVPDIDPAQHRLMIH-GMVKK-PLVFTMDDLK-RFPSVSRIYFLECSGNGGTGWRGAP   76 (326)
T ss_pred             Chhhc-cCCcCCCcceEEECCCCCCccCccccEEEEE-EecCC-CeEeeHHHHh-cCCCEEEEEEEEecCCCcccccccc
Confidence            34556 47999999999998           999999 99998 9999999999 8999       99999875      


Q ss_pred             --------------cCccccHHHHHhCCCCCC-----------C----CCcchhhhcCC----CCCCCCCCCCC-CCCce
Q psy11686        193 --------------EDSKLAAKDIASDPYVME-----------P----VRSPLLKATSL----KPYNAEPPPSM-LYSSL  238 (939)
Q Consensus       193 --------------~~~~~~~~~vL~~~g~~d-----------~----~~ipl~~a~~~----~~mNGepLp~~-G~PlR  238 (939)
                                    .|+|++++|||+.||+++           .    .||||++|+++    |+|||||||++ |||||
T Consensus        77 ~~G~~W~~g~i~~a~W~GV~L~dlL~~ag~~~~a~~V~~~g~D~~~y~~sipl~~a~~~~lLAy~mNGepL~~~hG~PlR  156 (326)
T cd02113          77 LPTAQYTHGMLSCSEWTGVPLSTLLEEAGVKPGAKWLLAEGADAAAMTRSIPLEKALDDALVAYAQNGEALRPENGYPLR  156 (326)
T ss_pred             cccccccccceeEEEEEeeEHHHHHHhcCCCCCceEEEEEecCCCceeEEeeHHHhCcCcEEEEeeCCeECChhhCceEE
Confidence                          456777899999999862           1    36999999965    99999999999 99999


Q ss_pred             EeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCCccCCCCCCcccccceEEEEecCCCCeeccCCcEEE
Q psy11686        239 LRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQME  312 (939)
Q Consensus       239 lvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~  312 (939)
                      |||||      ||||++|+|+++++++|||+.+|+..++...       ...++++|++||+|+.|.+++.+.. +++++
T Consensus       157 lvvPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~Y~~~~~~~~-------~~~~~~~~~v~S~I~~P~~~~~~~~-~~~~~  228 (326)
T cd02113         157 LVVPGWEGNTNVKWLRRIEVGDQPWMTREETSKYTDLLPDGR-------ARQFSFVMEAKSVITSPSGGQRLRE-PGFHE  228 (326)
T ss_pred             EEeCCccceeCceEeeEEEEEecccCCchhhccccccCCCCc-------ccccceEecccEEEecCCCCCEecC-CCeEE
Confidence            99999      9999999999999999999999997554322       1246789999999999999999964 67999


Q ss_pred             EEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeEEEeEEEeecCCCCce--eeeeecccCCCCCCc
Q psy11686        313 VQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKE--VSIMDMLMGKKPHDI  388 (939)
Q Consensus       313 i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W~~W~~~~~~~~~~~~--vra~d~~~~~~p~~~  388 (939)
                      |+||||+|++ +|+|||||+|||+||++|+|.++.      ++|+|++|++.|.++.+.++  +||+|..++.||..-
T Consensus       229 i~G~A~sG~~-~I~rVEVS~DgG~tW~~A~l~~~~------~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~QP~~~  299 (326)
T cd02113         229 ISGLAWSGRG-RIRRVDVSFDGGRTWQDARLEGPV------LPKALTRFRLPWKWDGRPAVLQSRATDETGYVQPTRA  299 (326)
T ss_pred             EEEEEECCCC-CEEEEEEEcCCCCCceECccCCCC------CCCceEEEeEEEEcCCCeEEEEEEEEcCCCCCCCCCc
Confidence            9999999965 599999999999999999998876      46999999999987665554  899999999999863

SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain

Probab=100.00  E-value=2.1e-47  Score=423.21  Aligned_cols=220  Identities=28%  Similarity=0.415  Sum_probs=191.9

Q ss_pred             EEEEEeecccCCcceeeeHHHHHHhccc-------eeccccCc-------------------cCccccHHHHHhCCCCC-
Q psy11686        157 STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNISQ-------------------EDSKLAAKDIASDPYVM-  209 (939)
Q Consensus       157 w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~~~-------------------~~~~~~~~~vL~~~g~~-  209 (939)
                      |+|+|+ |+|++ |++||++||+ +||+       +|+||+|.                   +|+|++++|||+.||+. 
T Consensus        18 w~L~V~-G~v~~-p~~~tl~dL~-~lp~~~~~~~l~C~gn~r~~~~~~~~g~~W~~g~i~~~~w~GV~L~dlL~~ag~~~   94 (317)
T cd02110          18 WRLEIH-GLVER-PLTLTLDDLK-RLPSVEVVATLECSGNGRGGFIPVRSGAQWGHGAVGNARWTGVPLKDLLEEAGVKP   94 (317)
T ss_pred             cEEEEE-eeeCC-CcEEeHHHHh-hCCCeeEEEEEEcCCCCcccccccccCCccccCceeecEEECcCHHHHHHHhCCCC
Confidence            999999 99998 9999999999 8999       99999765                   46788899999999985 


Q ss_pred             ----------C--------C--CCcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCC
Q psy11686        210 ----------E--------P--VRSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHES  257 (939)
Q Consensus       210 ----------d--------~--~~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~  257 (939)
                                |        .  .+|||++|+++     |+|||||||++ ||||||||||      ||||++|+|++++.
T Consensus        95 ~a~~V~~~~~D~~~~~~~~~Y~~sipl~~~~~~~~iLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~I~v~~~~~  174 (317)
T cd02110          95 GAKHVLFEGADVPPGEKAADYTRSVPLSKALDDDALLAYEMNGEPLPPDHGYPLRLVVPGWYGARSVKWLRRIEVTDQPS  174 (317)
T ss_pred             CCcEEEEEccCcccccCCCCeEEEEEHHHhcCCCcEEEehhcCccCCHHhCCceEEEcCCceeeEeeEEeeEEEEEecCC
Confidence                      2        2  25999999976     99999999999 9999999999      99999999999999


Q ss_pred             CCcccccCCCccCCCCCCCCccCCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCC
Q psy11686        258 TSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRT  337 (939)
Q Consensus       258 ~g~w~~~~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~t  337 (939)
                      +||||++||+++++..+.  .++....++++|++||+|+.|.+++.+.. +++++|+||||+| |++|+|||||+|||+|
T Consensus       175 ~g~w~~~~Y~~~~~~~~~--~~~~~~~~~~~~~~~s~I~~p~~~~~~~~-~~~~~i~G~A~~g-~~~I~rVEvS~DgG~t  250 (317)
T cd02110         175 DGYWQTRDYTVPPPDVDA--VGGKARRPIGEMPVKSVITSPSPGAELVS-GGRVEIGGVAWSG-GRGIRRVEVSLDGGRT  250 (317)
T ss_pred             CCceEccccccCCCcccc--cCCCccceeEEEccCEEEeccCCCCEecC-CCeEEEEEEEEcC-CCCEEEEEEEeCCCCc
Confidence            999999999998776543  33455679999999999999999976654 6799999999998 5789999999999999


Q ss_pred             eEEeeeCCCCCCCCCCCceeEEEeEEEeecCCCCce--eeeeecccCCCCCCc
Q psy11686        338 WHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKE--VSIMDMLMGKKPHDI  388 (939)
Q Consensus       338 W~~A~l~~~~~~~~~~~~~~W~~W~~~~~~~~~~~~--vra~d~~~~~~p~~~  388 (939)
                      |++|+|.++.     .+.|+|++|+++|++++|.++  +||+|..+++||...
T Consensus       251 W~~A~l~~~~-----~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~QP~~~  298 (317)
T cd02110         251 WQEARLEGPL-----AGPRAWRQWELDWDLPPGEYELVARATDSTGNVQPERA  298 (317)
T ss_pred             ceEeEccCCc-----CCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCcCCCcc
Confidence            9999998765     257999999999998876653  677777777777643

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).

>PRK11623 pcnB poly(A) polymerase I; Provisional

Probab=100.00  E-value=2.4e-38  Score=360.02  Aligned_cols=188  Identities=26%  Similarity=0.324  Sum_probs=164.1

Q ss_pred             ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-------EEEE
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-------AKVL  614 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-------~~v~  614 (939)
                      -++++.||++ |+++|+|+||+|++.|+                ++.++|+..     +++|..|++++       ++|+
T Consensus        70 YLVGG~VRDlLLG~~pkD~DIaT~A~pe----------------ev~~lf~~~-----r~iGrrF~~~hV~~~~~~iEVa  128 (472)
T PRK11623         70 YLVGGGVRDLLLGKKPKDFDVTTNATPE----------------QVRKLFRNC-----RLVGRRFRLAHVMFGPEIIEVA  128 (472)
T ss_pred             EEeChHHHHHHcCCCCCCEEEecCCCHH----------------HHHHHhhhC-----eeecCCCCEEEEEECCceEEEe
Confidence            4788899998 79999999999999999                777777643     34455666544       5799


Q ss_pred             eeccCCCC---------------------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCc
Q psy11686        615 SYRNRREK---------------------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDP  673 (939)
Q Consensus       615 tfr~~~~~---------------------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~  673 (939)
                      |||.+..+                     ..++++||.|||||||||||++   .+++|+|||||++||++|+||+||+|
T Consensus       129 TfR~~~~~~~~~~~~~~~~~~g~~~rdn~~gtieeDl~RRDFTINALayd~---~~~~IiD~~gG~~DLk~riLR~IGdp  205 (472)
T PRK11623        129 TFRGHHEGNESDRNTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSV---ADFTVRDYVGGMKDLKEGVIRLIGNP  205 (472)
T ss_pred             ccccccccccccccccccCCCCceecccCCCCHHHHHHhccccHHHheecC---CCCeEecCCCCHHHHhCCceeecCCh
Confidence            99975321                     1389999999999999999997   57899999999999999999999999


Q ss_pred             cccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--c
Q psy11686        674 VSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--L  751 (939)
Q Consensus       674 ~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--l  751 (939)
                      ..||.|||+|||||+|||++|||+   |+++|.++|++++.+|.++|+|||++|+.|||.++++...+..|.+.+++  |
T Consensus       206 ~~rf~EDPlRmLRAvRFAArLgF~---Ie~~T~~aI~~~a~lL~~vs~eRI~~El~KlL~~~~~~~~~~lL~e~GLl~~l  282 (472)
T PRK11623        206 ETRYREDPVRMLRAVRFAAKLDMR---ISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPL  282 (472)
T ss_pred             HhhcccchHHHHHHHHHHHHhCCC---cCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999997   99999999999999999999999999999999999988888777776665  7


Q ss_pred             cccccc
Q psy11686        752 FSKLKA  757 (939)
Q Consensus       752 fp~l~~  757 (939)
                      ||++..
T Consensus       283 fPel~~  288 (472)
T PRK11623        283 FPTITR  288 (472)
T ss_pred             hHhHHH
Confidence            998764

>PRK13299 tRNA CCA-pyrophosphorylase; Provisional

Probab=100.00  E-value=6.9e-38  Score=356.59  Aligned_cols=243  Identities=24%  Similarity=0.318  Sum_probs=192.1

Q ss_pred             ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-------EEEE
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-------AKVL  614 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-------~~v~  614 (939)
                      -++++.||++ +++++.|+||++++.++                ++.++|+....     ++..||+++       ++++
T Consensus        24 ylVGG~VRD~LLg~~~~DiDi~~~~~~~----------------~~~~~~~~~~~-----~g~~~gt~~v~~~~~~~ei~   82 (394)
T PRK13299         24 YFVGGSVRDYLLGRPIHDVDIATSAYPE----------------EVKAIFPRTVD-----VGIEHGTVLVLENGEEYEVT   82 (394)
T ss_pred             eeccchHHHHHcCCCCCCEEEecCCCHH----------------HHHHHhhhhhh-----ccccCCEEEEEECCEEEEEE
Confidence            4678889997 69999999999988887                55566554333     244456554       4689


Q ss_pred             eeccCCCCC-----------CCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhh
Q psy11686        615 SYRNRREKE-----------DRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLR  683 (939)
Q Consensus       615 tfr~~~~~~-----------~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlR  683 (939)
                      |||.+..+.           .++++||.||||||||||+++    +|.|+|||||++||++|+||++|+|.+||.|||+|
T Consensus        83 t~R~e~~~~d~~~p~~~~~~~~i~eDl~RRDFTINAma~~~----~g~liDpf~G~~DL~~~~iR~v~~~~~~f~eDplR  158 (394)
T PRK13299         83 TFRTESEYVDYRRPSEVTFVRSLEEDLKRRDFTINAIAMDE----NGEIIDLFDGLEDLKNRLIRAVGNAEERFQEDALR  158 (394)
T ss_pred             eeccccCccCCCCCccccCCCCHHHHHHhccccHHHhhcCC----CCCEeeCCCCHHHHhCCceeecCCHHHhhccCHHH
Confidence            999864332           389999999999999999996    69999999999999999999999998899999999


Q ss_pred             HHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc-ccccccchhhHH
Q psy11686        684 ILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL-LFSKLKATTMRE  762 (939)
Q Consensus       684 ilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l-lfp~l~~~~~~~  762 (939)
                      ||||+||++||||+   |+++|+++|++++..|.++|+|||+.||.|||.++++...+..|.+.+++ .||++....  .
T Consensus       159 iLRa~Rfaa~l~f~---i~~~t~~~i~~~~~~l~~vs~eRI~~El~kll~~~~~~~~l~~l~~~gll~~~p~l~~~~--~  233 (394)
T PRK13299        159 MMRAVRFASQLGFD---LETETFEAMKTQAPLLEKISVERIFVEFEKLLLGPFWRKGLKLLIETGLYNYLPGLKGKE--E  233 (394)
T ss_pred             HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHCChHHhCcccccch--H
Confidence            99999999999997   99999999999999999999999999999999999887777766665554 588886543  1


Q ss_pred             HHHHHHHHHhhhhhhhcccceeeccCCCChhHHHHHHHHHhCCCCCchhhHHHHh
Q psy11686        763 YIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAI  817 (939)
Q Consensus       763 ~~~~l~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~f~~RL~l~~~~~r~~ll~ai  817 (939)
                      .+..+..+.... ..+....|...++.+..+...++++||.++. +..+.+...+
T Consensus       234 ~~~~~~~~~~~~-~~~~~~~~a~ll~~~~~~~~~~~l~rl~ls~-~~~~~i~~li  286 (394)
T PRK13299        234 NLLKLTQLLWFS-FETSEQAWAALLISLKIENIKSFLKAWKLSN-KFIKDVVKLL  286 (394)
T ss_pred             HHHHHHHHHhcc-CCCHHHHHHHHHHhcCHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            223333332211 1123346777766666788899999999998 5655555554

>TIGR01942 pcnB poly(A) polymerase

Probab=100.00  E-value=3.6e-37  Score=346.78  Aligned_cols=187  Identities=25%  Similarity=0.299  Sum_probs=163.1

Q ss_pred             ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-------EEEE
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-------AKVL  614 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-------~~v~  614 (939)
                      -+++..||++ |+++++|+||+|++.|+                +++++|+..     +++|++|++++       ++|+
T Consensus        33 YlVGG~VRDlLLG~~pkD~DIat~a~pe----------------ei~~lf~~~-----~~iG~rf~~~~v~~~~~~iEva   91 (410)
T TIGR01942        33 YIVGGAVRDLLLGIEPKDFDVVTSATPE----------------EVRKLFRNS-----RIVGRRFRLVHVSFGRQIIEVA   91 (410)
T ss_pred             EEECHHHHHHHcCCCCCCEEEEcCCCHH----------------HHHHHhhhC-----eecCCCCCEEEEEECCEEEEEe
Confidence            4778899998 79999999999999999                777777643     34566666654       5799


Q ss_pred             eeccCCC---C----------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhch
Q psy11686        615 SYRNRRE---K----------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDY  681 (939)
Q Consensus       615 tfr~~~~---~----------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDP  681 (939)
                      |||....   .          ..++++||.|||||||||||++   .+++|+|||||++||++|+||++|+|..||.|||
T Consensus        92 tfR~~~~~~~~~~g~~~~d~~~gtieeDl~RRDFTINALayd~---~~~~IiD~~gG~~DL~~~~LR~igdp~~rf~EDP  168 (410)
T TIGR01942        92 TFRSGHKSSVNAEGRILKDNVYGTLEEDAWRRDFTVNALYYDP---SREVIIDYVGGMEDLKNRRLRLIGDPRSRYQEDP  168 (410)
T ss_pred             cccccccCCCCCCCCcccccccCCHHHHhhcCCchhhheeecC---CCCeeeCCCCcHHHHHCCceeecCChhhcccccH
Confidence            9997321   0          1488999999999999999997   6789999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--cccccc
Q psy11686        682 LRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLK  756 (939)
Q Consensus       682 lRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~  756 (939)
                      +|||||+|||++|||.   |+++|.++|++++..|.++|+|||++|+.|||.++++...+..|.+.+++  |||++.
T Consensus       169 lRiLRAvRFaa~LgF~---Ie~~T~~~I~~~a~~L~~vs~eRI~~El~Kll~~~~~~~~l~~L~~~gll~~lfPel~  242 (410)
T TIGR01942       169 VRMLRALRFSVKLEFT---IDESTARPIRESAPLLKGIPPARLFEEILKLLFSGRSAALFRMLCGYQLLEPLFPSVA  242 (410)
T ss_pred             HHHHHHHHHHHHhCCC---cCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHH
Confidence            9999999999999997   99999999999999999999999999999999999988877777776665  799876

This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).

>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.2e-35  Score=340.56  Aligned_cols=193  Identities=29%  Similarity=0.353  Sum_probs=167.6

Q ss_pred             ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeE--EeecccCeEEEEEEeeccC
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQ--LRIAGEGTVTAKVLSYRNR  619 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~--~~~~~~g~~~~~v~tfr~~  619 (939)
                      -++++.||+. ||.|+.|+|++|++.|+                +++++++.+...|.+  ++...++-..++++|||.+
T Consensus        26 ylVGGaVRD~LLG~~~~D~Diat~~~p~----------------~~~~~~~~~~~~G~~f~t~~v~~~~~~~ev~T~R~~   89 (412)
T COG0617          26 YLVGGAVRDLLLGRPPKDVDIATNATPE----------------EVKKLFRNTRPVGRKFGTVTVPFNGEIIEVTTFRKE   89 (412)
T ss_pred             EEeCcHHHHHHcCCCCcceeeeCCCCCH----------------HHHHHHhhhhhhhhhcCeEEeccCCEEEEEEEeecC
Confidence            3678899997 79999999999999999                888888866666544  2222221156789999987


Q ss_pred             CC-C---------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhhHHHHHH
Q psy11686        620 RE-K---------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFR  689 (939)
Q Consensus       620 ~~-~---------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlRilRa~R  689 (939)
                      .. +         ..++++||.||||||||||++.   .+|+|+|||||+.||++|+||+||+|.+||.|||||||||+|
T Consensus        90 ~~~~~~~~~~~~~~~tleeDl~RRDFTINAla~~~---~~~~iiD~~gG~~DL~~~~lR~i~~~~~rf~EDplRiLRa~R  166 (412)
T COG0617          90 GYGYNGRPLPVVFPGTLEEDLKRRDFTINALAYDP---EDGEIIDPFGGLKDLENRVLRHIGDASERFREDPLRILRAAR  166 (412)
T ss_pred             CCCcCCCcCCcCCCCCHHHHHHHhcccHHhhccCC---CCCeEEeCCCCHHHHhcCceeccCCHHHhcccchHHHHHHHH
Confidence            53 2         2499999999999999999886   799999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--ccccccc
Q psy11686        690 FFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLKA  757 (939)
Q Consensus       690 Faarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~~  757 (939)
                      |++||||.   ++++|.++|+.+...+..+|.|||+.|+.|||.++++...+..|.+.+.+  |||++..
T Consensus       167 Faa~l~f~---i~~~t~~~i~~~~~~~~~is~ERi~~El~KlL~~~~~~~~l~~l~~~g~l~~l~p~~~~  233 (412)
T COG0617         167 FAARLGFT---IEPETEEAIRLMAPLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILFPELDK  233 (412)
T ss_pred             HHHHcCCC---CChhHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChhhcChhHHH
Confidence            99999997   99999999999999999999999999999999999988877777776666  7998864

>PRK13297 tRNA CCA-pyrophosphorylase; Provisional

Probab=100.00  E-value=6.9e-35  Score=322.77  Aligned_cols=226  Identities=17%  Similarity=0.192  Sum_probs=166.0

Q ss_pred             cccccccccee-ecCCCCCCcc-ccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeE-----EEEEE
Q psy11686        542 QPRATLQGARL-LTRPPNPHSV-RFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTV-----TAKVL  614 (939)
Q Consensus       542 ~~i~~m~V~Sl-I~~P~~D~dI-~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~-----~~~v~  614 (939)
                      .-++++.||++ |++|+.|.|+ .++++++                ++.+       .+...+|..|+++     ..+++
T Consensus        14 ~YlVGGaVRD~LLg~~~~D~D~vv~ga~pe----------------~l~~-------~~~~~vG~~f~v~l~~~~~~e~a   70 (364)
T PRK13297         14 VYIVGGAVRDALLGLPAGDRDWVVVGATPE----------------DMAR-------RGFIPVGGDFPVFLHPRTKEEYA   70 (364)
T ss_pred             EEEeCcHHHHHHcCCCCCCeeeeccCChHH----------------HHHh-------cCceeeCCEEEEEEeCCceEEEE
Confidence            35788899997 6999999997 4567777                3222       1333445555543     34566


Q ss_pred             eeccCCC-------------CCCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhch
Q psy11686        615 SYRNRRE-------------KEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDY  681 (939)
Q Consensus       615 tfr~~~~-------------~~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDP  681 (939)
                      ++|++..             ...++++||.||||||||||++.    +|+|||||||++||++|+||+|++   +|.|||
T Consensus        71 ~aRterk~g~g~~~f~~~~~~~~tLeeDL~RRDFTINAmA~~~----~g~liDpfgG~~DL~~riLR~v~~---~F~EDP  143 (364)
T PRK13297         71 LARTERKSGRGYKGFTFYTGADVTLEQDLQRRDLTVNAIARTP----QGELVDPLDGVADVRARVLRHVGE---AFAEDP  143 (364)
T ss_pred             EEEEeeccCCCCceeEEeCCCCCCHHHHHHhccceeeeeEECC----CCCEEECCCCHHHHhCCCeeeCcc---ccccCH
Confidence            6654321             11389999999999999999984    689999999999999999999996   799999


Q ss_pred             hhHHHHHHHHHHhC-CCCCCChHHHHHHHHHhhh--hhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--cccccc
Q psy11686        682 LRILRYFRFFARIC-NNPNNHKEEVLSAIKNNLD--GLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLK  756 (939)
Q Consensus       682 lRilRa~RFaarlg-f~~~~i~~~t~~ai~~~~~--~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~  756 (939)
                      ||||||+|||+||| |+   |+++|.++|++++.  .|..+|+|||++||.|+|.++++...+..|.+.+.+  +||+|.
T Consensus       144 LRILRa~RFaarlg~F~---i~~eT~~~~~~~~~~~~l~~l~~ERI~~El~k~L~~~~p~~~l~~L~~~g~L~~l~Pel~  220 (364)
T PRK13297        144 VRILRLGRFAARFGDFS---IAPETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELH  220 (364)
T ss_pred             HHHHHHHHHHHHhCCCC---CCHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCcccc
Confidence            99999999999996 97   99999999999985  699999999999999999999876666655555555  799997


Q ss_pred             chhhHHHHHHHHHHHhhhhhhhcccceeeccCCCChhHHHHHHHHHhCCC
Q psy11686        757 ATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNP  806 (939)
Q Consensus       757 ~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~f~~RL~l~~  806 (939)
                      .....   ...+.|........ ..+|.+-+. ++ ..+.++|+||.+|.
T Consensus       221 ~~~~~---~~~l~~a~~~~~~~-~~r~a~L~~-~~-~~~~~~~~rl~~p~  264 (364)
T PRK13297        221 DDAAV---RAEIDRAAAAGLPL-AGRYALLCR-HT-PERDALGRRLRAPV  264 (364)
T ss_pred             ccccc---cHHHHHHHhcCCCh-HHHHHHHHc-cC-chHHHHHHHHCCCH
Confidence            64422   22334433322110 111211111 22 23688999999998

>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase

Probab=100.00  E-value=3.7e-33  Score=326.01  Aligned_cols=195  Identities=20%  Similarity=0.190  Sum_probs=162.9

Q ss_pred             ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-------EEEE
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-------AKVL  614 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-------~~v~  614 (939)
                      -+++..||++ +++++.|+||++++.++                ++.++++.+.. .....+..||+++       ++|+
T Consensus        31 y~VGG~VRD~llg~~~~D~Di~~~~~~~----------------~~~~~~~~~~~-~~~~~g~~~g~~~v~~~~~~~ei~   93 (466)
T TIGR02692        31 YLVGGSVRDALLGRLGHDLDFTTDARPE----------------ETLAILRPWAD-AVWDTGIAFGTVGAEKDGQQIEIT   93 (466)
T ss_pred             EEeCcHHHHHHcCCCCCCEEEEeCCCHH----------------HHHHHHHHhhh-hccccCcccceEEEEECCcEEEEE
Confidence            4678889997 69999999999998888                55555543210 0123466677765       4689


Q ss_pred             eeccCCCC----------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhhH
Q psy11686        615 SYRNRREK----------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRI  684 (939)
Q Consensus       615 tfr~~~~~----------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlRi  684 (939)
                      +||.+..+          .+++++||.||||||||||++++....|.|+|||||++||++|+||+|++|.++|.|||+||
T Consensus        94 ~~r~e~~~~~~~~~~v~~~~~i~~Dl~rRDFTiNA~a~~~~~~~~g~l~D~~~G~~Dl~~~~ir~v~~~~~~f~eDPlRi  173 (466)
T TIGR02692        94 TFRSDSYDGTSRKPEVTFGDTLEGDLIRRDFTVNAMAVRIPADGSLEFHDPVGGLDDLLAKVLDTPATPEQSFGDDPLRM  173 (466)
T ss_pred             ecccccCcCCCCCCcccCCCCHHHHHHhccccHHHhhccccCCCCceeecCCCcHHHHhCCceEecCChHHhhhhChHHH
Confidence            99976421          24899999999999999999985444479999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--ccccccc
Q psy11686        685 LRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLKA  757 (939)
Q Consensus       685 lRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~~  757 (939)
                      |||+|||+||||.   |+++|+++|++++..+..+|.|||+.||.|||.++++...+..|.+.+.+  +||++..
T Consensus       174 LRa~Rfaa~lgf~---i~~~T~~~i~~~~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~glL~~~~Pe~~~  245 (466)
T TIGR02692       174 LRAARFVSQLGFE---VAPRVRAAMTEMADQIERISAERVRVELDKLLLGDHPRAGIDLMVETGLADRVLPEIPA  245 (466)
T ss_pred             HHHHHHHHHhCCC---cCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhhhhhhhcCchHHH
Confidence            9999999999997   99999999999999999999999999999999999887777777776665  6898753

The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.

>PRK13298 tRNA CCA-pyrophosphorylase; Provisional

Probab=99.98  E-value=7.3e-33  Score=313.03  Aligned_cols=181  Identities=22%  Similarity=0.235  Sum_probs=144.3

Q ss_pred             cccccccee-ecCCCCCCcccc-CCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-----EEEEee
Q psy11686        544 RATLQGARL-LTRPPNPHSVRF-KSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-----AKVLSY  616 (939)
Q Consensus       544 i~~m~V~Sl-I~~P~~D~dI~t-~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-----~~v~tf  616 (939)
                      ++++.||+. |++|+.|.|+.+ +++++                ++.+  ..+...     |+.|+++.     .+++++
T Consensus         5 lVGGaVRD~LLg~~~~D~D~vv~g~~~~----------------~~~~--~~~~~v-----G~~f~v~l~~~~~~e~a~a   61 (417)
T PRK13298          5 LVGGAVRDSLLNLPVKDKDWVVVGGTPK----------------ILLS--INFQQV-----GKDFPVFLHPETHEEYALA   61 (417)
T ss_pred             EEccHHHHHHcCCCCCCeeEEecCCCHH----------------HHHH--HHHHHh-----CCeeEEEEeCceeEEEEee
Confidence            567889997 699999999765 44565                2211  113333     44455543     467777


Q ss_pred             ccCCC-------------CCCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhh
Q psy11686        617 RNRRE-------------KEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLR  683 (939)
Q Consensus       617 r~~~~-------------~~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlR  683 (939)
                      |.+..             ...++++||.||||||||||++.    +|.|||||||++||++|+||+|++   +|.|||||
T Consensus        62 Rter~~g~g~~g~~~~~~~~~tleeDL~RRDFTINAmA~~~----~g~liDp~~G~~DL~~r~lR~v~~---~F~EDPLR  134 (417)
T PRK13298         62 RTERKSGVGYTGFITDTSSDVTLEEDLIRRDLTINAIAQDE----NGNYIDPFQGKKDIQLRLLRHVSE---SFIEDPLR  134 (417)
T ss_pred             cccccccCCCCCcccccCCCCCHHHHHHhcccceeeeEECC----CCCEEeCCCcHHHHHCCcEecCCc---ccccCHHH
Confidence            76422             12389999999999999999985    799999999999999999999986   79999999


Q ss_pred             HHHHHHHHHHh---CCCCCCChHHHHHHHHHhh--hhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--cccccc
Q psy11686        684 ILRYFRFFARI---CNNPNNHKEEVLSAIKNNL--DGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLK  756 (939)
Q Consensus       684 ilRa~RFaarl---gf~~~~i~~~t~~ai~~~~--~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~  756 (939)
                      ||||+|||+||   ||+   |+++|.++|++++  ..|..+|+|||+.||.|+|.++++...+..|.+.+.+  +||+|.
T Consensus       135 iLRa~RFaar~~~lgF~---i~~~T~~~i~~~~~~~~l~~~s~ERI~~El~k~L~~~~p~~~~~~L~~~g~L~~~~PEl~  211 (417)
T PRK13298        135 VLRVARFAALLVHLGFK---IAKETMILMCIMVKKHELLYLTPERIWNETEKALKTDNPHVYFQVLYECNALKFLFPEID  211 (417)
T ss_pred             HHHHHHHHHHhccCCCc---cCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCcchH
Confidence            99999999995   997   9999999999998  7899999999999999999999876655555544444  699876


Q ss_pred             c
Q psy11686        757 A  757 (939)
Q Consensus       757 ~  757 (939)
                      .
T Consensus       212 ~  212 (417)
T PRK13298        212 F  212 (417)
T ss_pred             H
Confidence            4

>PRK13296 tRNA CCA-pyrophosphorylase; Provisional

Probab=99.98  E-value=1.8e-32  Score=300.61  Aligned_cols=256  Identities=19%  Similarity=0.235  Sum_probs=175.9

Q ss_pred             cccccccee-ecCCCCCCcccc-CCCCCcccccCCCcccccchhHHHHHHHHHHhhC--eEEeecccCeEEEEEEeeccC
Q psy11686        544 RATLQGARL-LTRPPNPHSVRF-KSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHG--YQLRIAGEGTVTAKVLSYRNR  619 (939)
Q Consensus       544 i~~m~V~Sl-I~~P~~D~dI~t-~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g--~~~~~~~~g~~~~~v~tfr~~  619 (939)
                      ++++.||++ +++++.|+|+.+ ++.++                ++..  ..+...|  +.++  -++...++++++|.+
T Consensus         5 LVGGaVRD~LLgr~p~DiDivV~g~~~~----------------~~l~--~~~~~vg~~f~V~--~~~~~~~Eiat~R~E   64 (360)
T PRK13296          5 LVGGAVRDMLLGITPKDKDWVVVGATED----------------EMLA--NGFIKIAANFPVF--IHPQTKQEYALARSE   64 (360)
T ss_pred             EeccHHHHHHcCCCCCCeeEEecCCcHH----------------HHHH--hhhhhcCCceEEE--EECCeeEEEeecccc
Confidence            577889997 799999999965 43333                1110  1122222  1111  123346789999975


Q ss_pred             CCCC-------------CCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhhHHH
Q psy11686        620 REKE-------------DRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILR  686 (939)
Q Consensus       620 ~~~~-------------~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlRilR  686 (939)
                      ..+.             .++++||.||||||||||++.    +|.|||||||++||++|+||++++   ||.|||+||||
T Consensus        65 ~~~~~g~~~~~v~~~~~~tieeDL~RRDFTINAmA~d~----~g~liDpfgG~~DL~~kiLR~v~~---sF~EDPLRILR  137 (360)
T PRK13296         65 KKTASGYHGFEVNFSKYITLEDDLKRRDLTINSIAIDQ----NNKVIDPFNGQADLQNRILRHTSI---AFIEDPLRVVR  137 (360)
T ss_pred             ccccCCCCCCeEeeCCCCCHHHHHHhcCcceeeeEECC----CCCEecCCCCHHHHHCCceecCcc---ccccCHHHHHH
Confidence            4211             169999999999999999985    699999999999999999999964   89999999999


Q ss_pred             HHHHHHHh---CCCCCCChHHHHHHHHHhh--hhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--ccccccchh
Q psy11686        687 YFRFFARI---CNNPNNHKEEVLSAIKNNL--DGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLKATT  759 (939)
Q Consensus       687 a~RFaarl---gf~~~~i~~~t~~ai~~~~--~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~~~~  759 (939)
                      |+|||+||   ||+   ++++|.++|++++  ..|..+|+|||+.||.|+|.++  ...+..|.+.+.+  +||++....
T Consensus       138 a~RFaarL~~~gF~---ie~eT~~~i~~~~~~~~L~~vs~ERI~~El~kiL~~p--~~~l~~L~~~glL~~lfPel~~~~  212 (360)
T PRK13296        138 LARFKAQLSNFNFS---IAQEMLALIKELVKTGELNHLTRERLHIEFVKALNNP--KIFFTTLKELEALKIIFPNISCIL  212 (360)
T ss_pred             HHHHHHHhccCCCC---cCHHHHHHHHHhhhhhhhhcCCHHHHHHHHHHHHhCh--HHHHHHHHHcCCHHHhCcchHHHh
Confidence            99999986   997   9999999999986  4899999999999999999853  3444444444444  699987522


Q ss_pred             --h--HHHHHHHHHHHhhhhhhhcccceeeccCCCChhHHHHHHHHHhCCCCCchhhHHHHhh-hhccccccccchhhHH
Q psy11686        760 --M--REYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIK-KNLDGLHNISGERIWT  834 (939)
Q Consensus       760 --~--~~~~~~l~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~f~~RL~l~~~~~r~~ll~ai~-~i~~~L~~l~~eri~~  834 (939)
                        .  ....+.. +.++.    +.-.+|.+.+..++...+.+++..+..+. +..+-.+.... .-+....+..++.++.
T Consensus       213 ~~~~~~~~~~~~-~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  286 (360)
T PRK13296        213 PLIPNKSFFENP-IYKGS----NINEKITLCLLKIPQQQLDDIRKELLLTN-KHYKLLKASIAISKILEDRSITAEEIFQ  286 (360)
T ss_pred             cCCCCcHHHHHH-HhhCC----CcchhhhhhhccCCHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhhcccccCCHHHHHH
Confidence              1  1222222 22221    11133455566667788899999988887 44433332222 1123455666666666


Q ss_pred             HHh
Q psy11686        835 ELN  837 (939)
Q Consensus       835 ~L~  837 (939)
                      .++
T Consensus       287 ~~~  289 (360)
T PRK13296        287 LIK  289 (360)
T ss_pred             HHH
Confidence            665

>KOG0535|consensus

Probab=99.98  E-value=3.7e-33  Score=291.07  Aligned_cols=161  Identities=26%  Similarity=0.403  Sum_probs=131.9

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc------CCCCC
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL------DSADV  476 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~------~g~d~  476 (939)
                      |+.++|+++|..+++++||||||||++|.++++++|+.|+.||||||+|+|+||+|||+.|||......      +|+|.
T Consensus        77 lt~d~l~s~~k~~vtatl~CaGNRR~emn~vK~vkGl~W~~~aisna~W~GarL~DvL~~~Gi~~~~~~a~hV~Fegad~  156 (381)
T KOG0535|consen   77 LTLDDLKSLPKYEVTATLQCAGNRRSEMNKVKKVKGLNWGSGAISNAVWGGARLCDVLRRAGIQSRETKALHVCFEGADD  156 (381)
T ss_pred             eeHHHhhhhccccceEEEEecCccHHHHhhHhhhccccccccccccceecCccHHHHHHHhCCCcccCcceEEEEecccc
Confidence            334444455667899999999999999999999999999999999999999999999999999753322      66664


Q ss_pred             ce------eeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeec-----
Q psy11686        477 QH------VHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNT-----  531 (939)
Q Consensus       477 ~~------~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~-----  531 (939)
                      ..      -|+++ ++|||+        +||||||+++||||||.||||..|.+      +|.|+++||+++|+.     
T Consensus       157 d~tg~pYgaSI~l-~~A~dp~~dVilAY~mNge~L~rDHGfPvRVIVPG~vGaR~VKWL~rIiV~~kESds~~~qkDyk~  235 (381)
T KOG0535|consen  157 DPTGTPYGASIPL-EKAMDPEADVILAYEMNGEPLPRDHGFPVRVIVPGVVGARMVKWLKRIIVTPKESDSHWQQKDYKG  235 (381)
T ss_pred             CCCCCcccccccH-hhhcCcccceEEeeeecCccCCCCCCCceEEEecccccchhhhhhhheeeccccccchhhhccccc
Confidence            32      47776 999998        89999999999999999999999765      888999999888876     


Q ss_pred             -CC----CCCCCCCCccccccccceeecCCCCCCcccc
Q psy11686        532 -QP----ENGHPSGYQPRATLQGARLLTRPPNPHSVRF  564 (939)
Q Consensus       532 -~~----~~~~~~~~~~i~~m~V~SlI~~P~~D~dI~t  564 (939)
                       +|    ++..+....+|++|+|+|.|+.|.....+..
T Consensus       236 f~psvd~d~~~w~~~p~iqe~pVqsaIctp~~~~~V~~  273 (381)
T KOG0535|consen  236 FSPSVDWDEVDWSSKPSIQELPVQSAICTPEDGLPVKA  273 (381)
T ss_pred             CCCccCccccccccCchhhhcCcceeecccCCCceecc
Confidence             22    2223344468999999999999966655543

>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed

Probab=99.97  E-value=1.7e-32  Score=313.77  Aligned_cols=181  Identities=23%  Similarity=0.297  Sum_probs=147.1

Q ss_pred             cccccccee-ecCCCCCCccc-cCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-----EEEEee
Q psy11686        544 RATLQGARL-LTRPPNPHSVR-FKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-----AKVLSY  616 (939)
Q Consensus       544 i~~m~V~Sl-I~~P~~D~dI~-t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-----~~v~tf  616 (939)
                      ++++.||++ |++|+.|+|+. +++.++                ++.+       .|++.+|+.|+++.     .+++++
T Consensus         5 lVGG~VRD~Llg~~~~D~D~vv~~~~~~----------------~~~~-------~~~~~~g~~f~v~~~~~~~~e~~~~   61 (409)
T PRK10885          5 LVGGAVRDALLGLPVKDRDWVVVGATPE----------------EMLA-------QGYQQVGKDFPVFLHPKTHEEYALA   61 (409)
T ss_pred             EeccHHHHHHcCCCCCCeeEEeeCChHH----------------HHHh-------CCCeecCceeEEEEeCCceEEEEee
Confidence            567889997 69999999974 567777                2111       13344566666543     457777


Q ss_pred             ccCCC-------------CCCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhh
Q psy11686        617 RNRRE-------------KEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLR  683 (939)
Q Consensus       617 r~~~~-------------~~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlR  683 (939)
                      |++..             +..++++||.||||||||||++.    +|.|||||||++||++|+||+|++   +|.|||+|
T Consensus        62 r~er~~~~g~~~~~~~~~~~~~l~eDl~RRDfTiNA~a~~~----~~~liDp~~G~~Dl~~~~lr~v~~---~f~eDPlR  134 (409)
T PRK10885         62 RTERKSGRGYTGFTCYAAPDVTLEEDLIRRDLTINAMAQDD----DGELIDPYGGQRDLEARLLRHVSP---AFAEDPLR  134 (409)
T ss_pred             eeccccCCCCCCceeccCCCCCHHHHHHhccchhhhheeCC----CCCEecCCCCHHHHhCCceEeCCc---hhhhCHHH
Confidence            75431             12389999999999999999994    799999999999999999999997   59999999


Q ss_pred             HHHHHHHHHHh---CCCCCCChHHHHHHHHHhhh--hhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--cccccc
Q psy11686        684 ILRYFRFFARI---CNNPNNHKEEVLSAIKNNLD--GLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLK  756 (939)
Q Consensus       684 ilRa~RFaarl---gf~~~~i~~~t~~ai~~~~~--~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~  756 (939)
                      ||||+|||+||   ||.   |+++|+++|++++.  .|..+++|||+.||.|+|.++++...+..|.+.+.+  +||++.
T Consensus       135 iLRa~RFaarl~~lgf~---i~~~T~~~i~~~~~~~~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~  211 (409)
T PRK10885        135 VLRVARFAARFAHLGFR---IAPETLALMREMVASGELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEID  211 (409)
T ss_pred             HHHHHHHHHHhccCCCC---cCHHHHHHHHHhhhhchhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHH
Confidence            99999999999   997   99999999999987  899999999999999999999877666655555554  799875


Q ss_pred             c
Q psy11686        757 A  757 (939)
Q Consensus       757 ~  757 (939)
                      .
T Consensus       212 ~  212 (409)
T PRK10885        212 A  212 (409)
T ss_pred             H
Confidence            4

>KOG2159|consensus

Probab=99.97  E-value=2.8e-31  Score=293.27  Aligned_cols=123  Identities=36%  Similarity=0.366  Sum_probs=113.5

Q ss_pred             CccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHH
Q psy11686        625 RIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEE  704 (939)
Q Consensus       625 ~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~  704 (939)
                      +..+|+.|||||||++.+++   .+|+|+||+||++||++++||++++|.+||.|||+||||++|||+||||+++..+.+
T Consensus       125 t~~~nalRRD~TIN~Lffn~---~~~~VeDytgG~eDL~~~kvrt~~~A~~tf~eDpLRILR~iRFaaRlgftid~~~~e  201 (416)
T KOG2159|consen  125 TRDENALRRDFTINSLFFNP---FDGTVEDYTGGLEDLKNKKVRTVLHAKQTFLEDPLRILRGIRFAARLGFTIDEESKE  201 (416)
T ss_pred             cchhhhhhhccchhhhhccC---CCCceeeccccHhHHhcCeEEeeccccceeccchHHHHHHHHHHHhhcCccCcccHH
Confidence            67789999999999999998   899999999999999999999999999999999999999999999999986666899


Q ss_pred             HHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc
Q psy11686        705 VLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL  750 (939)
Q Consensus       705 t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l  750 (939)
                      |+++++.++.+++++|+|||+.|+.|||.++.+..++..|.+..+.
T Consensus       202 ~~~~~k~~~~~~~kIS~ERI~~Ei~kmL~g~~~~~~L~ll~~~~~~  247 (416)
T KOG2159|consen  202 TLEAIKENVALLAKISRERIGVEINKMLVGNSAEASLRLLWRLFGF  247 (416)
T ss_pred             HHhhHHHHHHHhccccHHHHHHHHHHHHcCCcHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999887777766663443

>PLN00177 sulfite oxidase; Provisional

Probab=99.96  E-value=2.5e-29  Score=284.35  Aligned_cols=160  Identities=21%  Similarity=0.331  Sum_probs=129.5

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCC-------CCCCc---C
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGIS-------PDQSL---D  472 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~-------~~~~~---~  472 (939)
                      |+++||++||++++++++||+||+|++|...++++|.+|++||||||+|+||+|+|||++||++       +++.+   +
T Consensus        79 ltl~dL~~~p~~~~~~~l~C~GN~R~~~~~~~~~~G~~W~~gaig~a~WtGv~L~dvL~~aG~~~~~~~~~~~a~~v~f~  158 (393)
T PLN00177         79 LSMKDIRKLPKYNVTATLQCAGNRRTAMSKVRKVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTSITSSGGKHVEFV  158 (393)
T ss_pred             eeHHHHhcCCCEEEEEEEEecCCCccceeecccccccCcccceeecCeEECcCHHHHHHHcCCCccccccCCCceEEEEE
Confidence            4555666779999999999999999999888999999999999999999999999999999996       44544   5


Q ss_pred             CCCC--------ceeeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCce--
Q psy11686        473 SADV--------QHVHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSS--  528 (939)
Q Consensus       473 g~d~--------~~~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~--  528 (939)
                      |.|.        ..+++++ ++|||+        +||||||+++||||||+|||||++..      +|+|.++++...  
T Consensus       159 g~d~~~~~~~~~y~~sipl-~~a~~~~~d~lLAy~mNGepLp~~hG~PlRLvvPg~~G~~svKWL~~I~v~~~~~~g~w~  237 (393)
T PLN00177        159 SVDKCKEENGGPYKASIPL-SQATNPEADVLLAYEMNGEVLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFM  237 (393)
T ss_pred             EeccccccCCCCcEEeEEH-HHhhCcccCeEEEEeeCCeECchhcCCceEEEeCCEeeeeceEEeeEEEEEecCCCCcce
Confidence            5542        3588998 999973        89999999999999999999999754      788888887554  


Q ss_pred             ---eecCCCCC-----CCCCCccccccccceeecCCCCCCccc
Q psy11686        529 ---YNTQPENG-----HPSGYQPRATLQGARLLTRPPNPHSVR  563 (939)
Q Consensus       529 ---y~~~~~~~-----~~~~~~~i~~m~V~SlI~~P~~D~dI~  563 (939)
                         |+..+...     .+....|+.+|+|+|+|+.|..+..+.
T Consensus       238 ~~~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~i~  280 (393)
T PLN00177        238 QKDYKMFPPSVNWDNINWSTRRPQMDFPVQSAICSLEDVNAIK  280 (393)
T ss_pred             ecccccCCCCCCccccCccccCcceeecCCeEEecCCCCCccc
Confidence               44322111     122236899999999999997666653

>cd02107 YedY_like_Moco YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=99.95  E-value=4.3e-28  Score=251.47  Aligned_cols=130  Identities=15%  Similarity=0.103  Sum_probs=114.6

Q ss_pred             EEEEEeecccCCcceeeeHHHHHHhccc-------eeccccC--ccCccccHHHHHhCCCCC-----------C------
Q psy11686        157 STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNIS--QEDSKLAAKDIASDPYVM-----------E------  210 (939)
Q Consensus       157 w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~~--~~~~~~~~~~vL~~~g~~-----------d------  210 (939)
                      |+|+|+ |+|++ |++||++||++.||+       +|+++|+  +.|+|+++++||+.||++           |      
T Consensus        28 w~L~V~-GlV~~-p~~ltl~eL~~~lP~~~~~~~l~Cv~gWs~~a~W~GV~L~dlLe~ag~~~~A~~V~f~~~d~~~~~~  105 (218)
T cd02107          28 WTVSVS-GLVKK-PKTLDIDDLMKTFPLEERIYRFRCVEGWSMVVPWVGFPLAALLARAEPTSEAKYVRFTTLLDKEQMP  105 (218)
T ss_pred             eEEEEE-eEcCC-CeEEEHHHHHhcCCCeEEEEEEEEeCCCcceeEEEeeEHHHHHHHcCCCCCCCEEEEEecCcccccc
Confidence            999999 99998 999999999933999       9999988  789999999999999974           1      


Q ss_pred             -----------C--CCcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccC
Q psy11686        211 -----------P--VRSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQND  265 (939)
Q Consensus       211 -----------~--~~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~  265 (939)
                                 +  .||||++||++     |+|||||||++ ||||||||||      ||||++|+|++++++||||++|
T Consensus       106 g~~g~~~~~~~~Y~~slpl~~Al~~~~LLAy~mNGepLp~~HG~PlRLVVPg~yG~ksvKWL~~Iev~~~~~~GyWe~~~  185 (218)
T cd02107         106 GQSGLFGVLPWPYVEGLRLDEAMHPLTLLAVGLYGEALPKQNGAPIRLVVPWKYGFKSIKSIVKIEFTKEQPPTTWNLAA  185 (218)
T ss_pred             CCccccccccCCcccceeHHHhhCcccEEEeeeCCcCCcHhhCCceEEEeCCeeeeEcceeeeEEEEEeCCCCCcccccC
Confidence                       1  25999999998     99999999999 9999999999      9999999999999999999995


Q ss_pred             ------CCccCCCCCCCCccCCCCCCcccccceEEEEe
Q psy11686        266 ------YKGFSPSTDWDTVDFAKSPAIQELPVISAICL  297 (939)
Q Consensus       266 ------Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~  297 (939)
                            |+..++.++         .|+++|.|+|.|..
T Consensus       186 ~~~~~~y~~~~~~~~---------~~~~~~~~~~~i~~  214 (218)
T cd02107         186 PDEYGFYANVNPSVD---------HPRWSQATERRIGE  214 (218)
T ss_pred             cccccccccCCCCCC---------CCccccceeeeecc
Confidence                  444443321         57999999999853

Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY, which is likely membrane-anchored by a heme-containing trans-membrane subunit YedZ. Preliminary results indicate that YedY may represent a new type of membrane-associated bacterial reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR)

Probab=99.95  E-value=7.2e-28  Score=272.26  Aligned_cols=159  Identities=19%  Similarity=0.270  Sum_probs=129.8

Q ss_pred             ccHHHHhhc-cccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCC---CCCc---CCCC
Q psy11686        403 FAEEKVRTF-NEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISP---DQSL---DSAD  475 (939)
Q Consensus       403 f~~~~l~~~-p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~---~~~~---~g~d  475 (939)
                      |+++||+++ |++++++++||+||+|++|...+++.|.+|+.|+||||+|+||+|+|||++||+++   ++++   +|+|
T Consensus        75 ltl~dL~~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~WtGV~L~dlLe~aG~~~~~~~a~~V~~~g~D  154 (386)
T cd02112          75 LTMDELVAMFPSVTFPVTLVCAGNRRKEQNMVKKTIGFNWGAAGTSTSLWTGVRLSDLLDRCGPKSPKGGARHVCFEGAD  154 (386)
T ss_pred             EeHHHHHhcCCceEEEEEEEcCCCCcccccccccccCcCcccccceEeEEEeeEHHHHHHHcCCCCccCCceEEEEEccC
Confidence            344444443 78899999999999999998889999999999999999999999999999999999   6766   6766


Q ss_pred             C--------ceeeEEeeeeecc---c-----CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeecCC
Q psy11686        476 V--------QHVHVEIWSKAVD---S-----SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNTQP  533 (939)
Q Consensus       476 ~--------~~~~~~~~~~a~d---~-----~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~~~  533 (939)
                      .        ..+++++ ++||+   +     +||||||+++||||||+||||++|..      +|++.++++.+.|++..
T Consensus       155 ~~~~~~~~~y~~slpl-~~al~~~~dvlLAy~mNGepLp~~hG~PlRlvVPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~  233 (386)
T cd02112         155 DLLPGPNGKYGTSITL-SWAMDPSKDVMLAYKQNGELLHPDHGFPVRLIIPGQIGGRMVKWLKRIVVSDRESQNHYHFHD  233 (386)
T ss_pred             cccccCCCCcEeeeEH-HHhhCcCCCeEEEEeeCCeECCccCCcEEEEEeCCccceeeeeEeEEEEEEecCCCCceeecc
Confidence            4        3478998 89997   3     99999999999999999999999654      88888888877776522


Q ss_pred             CC----------CCC-----CCCccccccccceeecCCCCCCcc
Q psy11686        534 EN----------GHP-----SGYQPRATLQGARLLTRPPNPHSV  562 (939)
Q Consensus       534 ~~----------~~~-----~~~~~i~~m~V~SlI~~P~~D~dI  562 (939)
                      +.          ...     +...+++.|+|+|+|+.|..+..+
T Consensus       234 y~~~~~~~~~~~~~~~~~w~~~~~~i~~~~v~S~I~~P~~~~~v  277 (386)
T cd02112         234 NRVLPSHVDAELANEEGWWYKPEYIINDLNVNSAITTPAHDEVL  277 (386)
T ss_pred             cccCCcccCccccccccccccCCceeeeeccCeEEeccCCCCEe
Confidence            11          111     112478999999999999877766

Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO)

Probab=99.94  E-value=1.1e-27  Score=269.42  Aligned_cols=158  Identities=28%  Similarity=0.377  Sum_probs=128.4

Q ss_pred             ccHHHHhhc-cccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCC----CCc---CCC
Q psy11686        403 FAEEKVRTF-NEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPD----QSL---DSA  474 (939)
Q Consensus       403 f~~~~l~~~-p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~----~~~---~g~  474 (939)
                      |+++||+++ |++++++++||+||+|+++...+++.|.+|+.|+|||++|+||+|+|||++||+++.    +.+   +|.
T Consensus        60 ltl~dL~~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aGv~~~~~~~a~~V~~~~~  139 (365)
T cd02111          60 LSLEDLKSLFPKHEVTATLQCAGNRRSEMTKVKKVKGLQWGDGAISNAEWGGARLRDVLLDAGIPEDDSQGGLHVHFEGL  139 (365)
T ss_pred             EeHHHHHhhCCcEEEEEEEEecCCCchhccccccccCCCccCCcEEeeEEECcCHHHHHHHhCCCCccCCCceEEEEEec
Confidence            444444554 788999999999999999988899999999999999999999999999999999986    444   777


Q ss_pred             C------CceeeEEeeeeecc--c------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCc-----ee
Q psy11686        475 D------VQHVHVEIWSKAVD--S------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDS-----SY  529 (939)
Q Consensus       475 d------~~~~~~~~~~~a~d--~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~-----~y  529 (939)
                      |      ...+++|+ ++||+  .      +||||||+++||||||+||||+++..      +|+|.++++..     .|
T Consensus       140 d~~~~~~~y~~sipl-~~a~~p~~~~lLA~~mNGepL~~~hG~PlRLvvPg~~G~~~vKWl~~I~v~~~~~~g~w~~~~Y  218 (365)
T cd02111         140 DVDPTGTPYGASIPL-SKALDPEADVLLAYEMNGTPLPRDHGFPLRVVVPGVVGARSVKWLDRIVVSDEESDSHWQQNDY  218 (365)
T ss_pred             CCCCCCCCeeeeeEH-HHhhCcCCCeEEEehhcCCCCccccCccEEEEeCCeeEEEEEEEeeEEEEeccCCCCcceecce
Confidence            7      45689998 99998  3      99999999999999999999999754      77888887744     44


Q ss_pred             ec-CCCC----CCCCCCccccccccceeecCCCCCCc
Q psy11686        530 NT-QPEN----GHPSGYQPRATLQGARLLTRPPNPHS  561 (939)
Q Consensus       530 ~~-~~~~----~~~~~~~~i~~m~V~SlI~~P~~D~d  561 (939)
                      ++ .+..    ..+....+++.|+|+|+|..|..+..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~  255 (365)
T cd02111         219 KGFSPSVDWDNVDFSKAPAIQEMPVQSAICSPSVGAP  255 (365)
T ss_pred             eecCCCCCccccCccccCceeeeccCEEEecCCCCCe
Confidence            43 1111    11223468999999999999987664

SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>PLN02252 nitrate reductase [NADPH]

Probab=99.94  E-value=1.8e-27  Score=293.66  Aligned_cols=162  Identities=21%  Similarity=0.333  Sum_probs=134.7

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCC---CCCCc---CCCC-
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGIS---PDQSL---DSAD-  475 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~---~~~~~---~g~d-  475 (939)
                      |+++||++||+++++++|+|+||+|+++..++++.|.+|+.|||||++||||+|+|||++||+.   +++++   +|+| 
T Consensus       148 ltl~dL~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~Wg~gavs~~~W~GV~L~dlL~~ag~~~~~~~a~~V~f~g~d~  227 (888)
T PLN02252        148 LTMDELVRFPARELPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVRLRDVLRRCGVMSRKGGALNVCFEGAED  227 (888)
T ss_pred             eeHHHHhhCCCeeEEEEEEeCCCCcccccccccccccCccccccccceEeceEHHHHHHHcCCCCCCCCceEEEEEcccc
Confidence            4555556678999999999999999999999999999999999999999999999999999998   56666   6765 


Q ss_pred             -------CceeeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceeeE------EEEEEecCCcCceeecC--
Q psy11686        476 -------VQHVHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYHR------VRVEIWSKAVDSSYNTQ--  532 (939)
Q Consensus       476 -------~~~~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~~------~~i~~~~~~~~~~y~~~--  532 (939)
                             ...+++++ ++|||+        +||||||+++||||||+|||||+|.      .+|+|.++++++.|++.  
T Consensus       228 ~~~~~~~~y~~sipl-~~a~d~~~dvlLAy~mNGepL~~~hG~PvRlvvPG~~G~~~vKWl~~I~v~~~~~~~~~~~~d~  306 (888)
T PLN02252        228 LPGGGGSKYGTSITL-ERAMDPARDVILAYMQNGEPLTPDHGFPVRLIIPGFIGGRMVKWLKRIIVTTAESDNYYHYRDN  306 (888)
T ss_pred             cccCCCCCceeeeeH-HHHhCcCCCeEEEEeeCCeECCccCCceEEEeCCCceeeeeeeEeeEEEEEeCCCCCceeeccc
Confidence                   23478998 899984        8999999999999999999999974      38889999998888762  


Q ss_pred             ---CCCC-----CC-C----CCccccccccceeecCCCCCCccccC
Q psy11686        533 ---PENG-----HP-S----GYQPRATLQGARLLTRPPNPHSVRFK  565 (939)
Q Consensus       533 ---~~~~-----~~-~----~~~~i~~m~V~SlI~~P~~D~dI~t~  565 (939)
                         |...     .. .    ...++++|+|+|+|+.|..+..+..+
T Consensus       307 r~~p~~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~  352 (888)
T PLN02252        307 RVLPSHVDAELANAEGWWYKPEYIINELNINSVITTPAHDEILPIN  352 (888)
T ss_pred             ccCCCcccccccccccccccCCccceeeccceEEecCCCCCEeccc
Confidence               2110     00 1    12368999999999999988887654

>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=99.94  E-value=4.4e-27  Score=260.13  Aligned_cols=157  Identities=20%  Similarity=0.311  Sum_probs=129.2

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCC--c
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADV--Q  477 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~--~  477 (939)
                      |+++||++||+++++++|+|+||+|+++.. +++.|.||+.|+|||++|+||+|+|||++||+++++.+   +|.|.  .
T Consensus        45 ltl~dL~~~p~~~~~~~l~C~gn~r~~~~~-~~~~G~~W~~g~i~~a~W~GV~L~dlL~~ag~~~~a~~V~~~g~D~~~y  123 (326)
T cd02113          45 FTMDDLKRFPSVSRIYFLECSGNGGTGWRG-APLPTAQYTHGMLSCSEWTGVPLSTLLEEAGVKPGAKWLLAEGADAAAM  123 (326)
T ss_pred             eeHHHHhcCCCEEEEEEEEecCCCcccccc-cccccccccccceeEEEEEeeEHHHHHHhcCCCCCceEEEEEecCCCce
Confidence            556666678999999999999999999864 45889999999999999999999999999999998877   78774  4


Q ss_pred             eeeEEeeeeeccc-----CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcC-----ceeecCCCCCCCCCC
Q psy11686        478 HVHVEIWSKAVDS-----SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVD-----SSYNTQPENGHPSGY  541 (939)
Q Consensus       478 ~~~~~~~~~a~d~-----~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~-----~~y~~~~~~~~~~~~  541 (939)
                      .+++|+ ++||++     +||||||+++||||||+||||+++..      +|++.+.++.     ..|+..+...  ...
T Consensus       124 ~~sipl-~~a~~~~lLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~Y~~~~~~~--~~~  200 (326)
T cd02113         124 TRSIPL-EKALDDALVAYAQNGEALRPENGYPLRLVVPGWEGNTNVKWLRRIEVGDQPWMTREETSKYTDLLPDG--RAR  200 (326)
T ss_pred             eEEeeH-HHhCcCcEEEEeeCCeECChhhCceEEEEeCCccceeCceEeeEEEEEecccCCchhhccccccCCCC--ccc
Confidence            588997 889965     99999999999999999999999764      7788887763     3355421111  123


Q ss_pred             ccccccccceeecCCCCCCccc
Q psy11686        542 QPRATLQGARLLTRPPNPHSVR  563 (939)
Q Consensus       542 ~~i~~m~V~SlI~~P~~D~dI~  563 (939)
                      .|.+.|+|+|+|..|..+..+.
T Consensus       201 ~~~~~~~v~S~I~~P~~~~~~~  222 (326)
T cd02113         201 QFSFVMEAKSVITSPSGGQRLR  222 (326)
T ss_pred             ccceEecccEEEecCCCCCEec
Confidence            4778999999999998777774

SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain

Probab=99.93  E-value=1.1e-26  Score=261.49  Aligned_cols=158  Identities=20%  Similarity=0.274  Sum_probs=127.5

Q ss_pred             ccHHHHhhc-cccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCC--
Q psy11686        403 FAEEKVRTF-NEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADV--  476 (939)
Q Consensus       403 f~~~~l~~~-p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~--  476 (939)
                      |+++||+++ |+++++++++|+||+|+.+  .+++.|.||++|+|||++|+||+|+|||++||+++++++   +|.|.  
T Consensus        79 ~tl~dL~~~~p~~~~~~~l~C~gN~r~~~--~~~~~G~~W~~G~i~~a~WtGV~L~dlL~~aG~~~~a~~V~f~g~D~~~  156 (367)
T cd02114          79 LSLAELKRIEPRFEVVAVNQCSGNSRGFF--QPRVQGAQLANGAMGNARWAGVPLKAVLAKAGVQDGARQVAFRGLDQPV  156 (367)
T ss_pred             EEHHHHhhcCCceEEEEEEEECCCCcccc--cccccCCCcccceEEeeEEEeeEHHHHHHHcCCCCCCcEEEEEecCCcc
Confidence            444555553 7889999999999999764  578899999999999999999999999999999998877   67663  


Q ss_pred             ------ceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeec-----CC
Q psy11686        477 ------QHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNT-----QP  533 (939)
Q Consensus       477 ------~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~-----~~  533 (939)
                            ..+++|+ ++||++      +||||||+++||||||+||||+++..      +|+|.++++...|+.     .+
T Consensus       157 ~~~~~~y~~sipl-~~a~~~~~lLAy~mNGepL~~~hG~PlRlvvPg~~g~~~vKwl~~I~v~~~~~~g~w~~~~Y~~~~  235 (367)
T cd02114         157 LDVTPDFVKSLDI-DHALDGEVMLAWEMNGEPLPVLNGYPLRLVVPGFYATYWVKHLSHITVLDKEFDGFWASQAYRIPD  235 (367)
T ss_pred             ccCCCCeEEeeeH-HHhcCCCeEEEEeeCCeECCHHhCCceEEEecCEeeeeeeEeeeEEEEEecCCCCceeecccccCC
Confidence                  3578998 899986      99999999999999999999999764      788888877554443     21


Q ss_pred             CC---CC----CCCCccccccccceeecCCCCCCccc
Q psy11686        534 EN---GH----PSGYQPRATLQGARLLTRPPNPHSVR  563 (939)
Q Consensus       534 ~~---~~----~~~~~~i~~m~V~SlI~~P~~D~dI~  563 (939)
                      ..   ..    +....+++.|+|+|+|..|..+..+.
T Consensus       236 ~~~~~~~~g~~~~~~~~i~~~~v~S~I~~P~~~~~~~  272 (367)
T cd02114         236 NADAGVEPGTAPDRTAPINRFKVRSFITSLENGAIVA  272 (367)
T ss_pred             CcccccCCcccccccceeeeeecceEEecCCCCCEec
Confidence            11   00    11236899999999999998776664

SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain

Probab=99.92  E-value=2.6e-25  Score=246.98  Aligned_cols=157  Identities=25%  Similarity=0.399  Sum_probs=128.0

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCC----
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSAD----  475 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d----  475 (939)
                      |+++||++||+++++++++|+||+|++|..  ...|+||++|+|||++|+||+|+|||++||+++++.+   +|.|    
T Consensus        32 ~tl~dL~~lp~~~~~~~l~C~gn~r~~~~~--~~~g~~W~~g~i~~~~w~GV~L~dlL~~ag~~~~a~~V~~~~~D~~~~  109 (317)
T cd02110          32 LTLDDLKRLPSVEVVATLECSGNGRGGFIP--VRSGAQWGHGAVGNARWTGVPLKDLLEEAGVKPGAKHVLFEGADVPPG  109 (317)
T ss_pred             EeHHHHhhCCCeeEEEEEEcCCCCcccccc--cccCCccccCceeecEEECcCHHHHHHHhCCCCCCcEEEEEccCcccc
Confidence            666677778999999999999999998854  3459999999999999999999999999999987776   7776    


Q ss_pred             ----CceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeec-----CCC
Q psy11686        476 ----VQHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNT-----QPE  534 (939)
Q Consensus       476 ----~~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~-----~~~  534 (939)
                          .-.+++++ ++|+++      +||||||+++||||+|+||||+++..      +|+|.+.++...|+.     .+.
T Consensus       110 ~~~~~Y~~sipl-~~~~~~~~iLAy~mNGepL~~~hG~PlRlvvPg~~G~~~vKwl~~I~v~~~~~~g~w~~~~Y~~~~~  188 (317)
T cd02110         110 EKAADYTRSVPL-SKALDDDALLAYEMNGEPLPPDHGYPLRLVVPGWYGARSVKWLRRIEVTDQPSDGYWQTRDYTVPPP  188 (317)
T ss_pred             cCCCCeEEEEEH-HHhcCCCcEEEehhcCccCCHHhCCceEEEcCCceeeEeeEEeeEEEEEecCCCCceEccccccCCC
Confidence                34588998 899965      99999999999999999999999754      788888877555544     222


Q ss_pred             CC---CCCCCccccccccceeecCCCCCCcc
Q psy11686        535 NG---HPSGYQPRATLQGARLLTRPPNPHSV  562 (939)
Q Consensus       535 ~~---~~~~~~~i~~m~V~SlI~~P~~D~dI  562 (939)
                      ..   ......+++.|+|+|+|+.|..+..+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~s~I~~p~~~~~~  219 (317)
T cd02110         189 DVDAVGGKARRPIGEMPVKSVITSPSPGAEL  219 (317)
T ss_pred             cccccCCCccceeEEEccCEEEeccCCCCEe
Confidence            11   12234689999999999999766444

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).

>cd02108 bact_SO_family_Moco bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=99.92  E-value=2.2e-25  Score=228.48  Aligned_cols=123  Identities=14%  Similarity=0.132  Sum_probs=110.8

Q ss_pred             cccc-CCCCceEee-------EEEEEeecccCCcceeeeHHHHHHhccc-------eecccc--CccCccccHHHHHhCC
Q psy11686        144 NFLT-PSLLSQVGS-------STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNI--SQEDSKLAAKDIASDP  206 (939)
Q Consensus       144 ~~~T-P~~~~~v~~-------w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~--~~~~~~~~~~~vL~~~  206 (939)
                      +.|| |+.+||.++       |+|+|+ |+|++ |++||++||+ +||+       +|++++  ..+|+|+++++||+.|
T Consensus         8 ~~~~~p~~~~y~~~~~~~~~~w~l~V~-G~v~~-p~~ltl~dL~-~lp~~~~~~~~~Cv~gws~~~~w~Gv~L~dlL~~a   84 (185)
T cd02108           8 NGIRKPEALAYKALEANDFADYRLEVG-GLVEH-PLSLSLEELR-ALPQRTQITRHICVEGWSAIGKWGGVPLRTILELV   84 (185)
T ss_pred             hhccCCCccceeccCCCCCCCEEEEEE-cccCC-CEEEEHHHHh-CCCCEEEEEEEEEcCCCceEEEEEEEEHHHHHHHh
Confidence            4466 888888776       999999 99998 9999999999 8999       999875  4689999999999999


Q ss_pred             CCCC-----------------C--CCcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeec
Q psy11686        207 YVME-----------------P--VRSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDH  255 (939)
Q Consensus       207 g~~d-----------------~--~~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~  255 (939)
                      |+..                 +  .+|||++++++     |+||||||+++ ||||||||||      ||||++|+|+++
T Consensus        85 g~~~~a~~V~~~a~d~~~~~~~Y~~sipl~~~~~~~~iLA~~~nGepL~~~hG~PlRLvvPg~~G~k~vKwl~~I~~~~~  164 (185)
T cd02108          85 GPLPEAKYVVFKCADDFAGGDRYYESIDMASALHPQTLLAYEMNGQPLPIKNGAPLRLRVETQLGYKQAKWVTEIELVND  164 (185)
T ss_pred             CCCCCCcEEEEEecCcCCCCCCeEEEEEHHHhcCCCcEEEEeeCCeECChhcCceEEEEcCCcccccCceEccEEEEEec
Confidence            9751                 1  25999999987     99999999999 9999999999      999999999999


Q ss_pred             CCC------CcccccCCCcc
Q psy11686        256 EST------SHWQQNDYKGF  269 (939)
Q Consensus       256 ~~~------g~w~~~~Y~~~  269 (939)
                      +.+      ||||++||+.+
T Consensus       165 ~~~~~~~~~g~We~~gy~~~  184 (185)
T cd02108         165 LPGIGGGKGGYWEDQGYNWF  184 (185)
T ss_pred             cCccccCCCCccccCCcccc
Confidence            999      99999999864

This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.

>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT)

Probab=99.91  E-value=3e-24  Score=208.38  Aligned_cols=86  Identities=37%  Similarity=0.791  Sum_probs=66.0

Q ss_pred             CCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCC-CceeEEEeE
Q psy11686        284 PAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLT-RHWGWTLWR  362 (939)
Q Consensus       284 ~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~-~~~~W~~W~  362 (939)
                      .||++|+|||+|+.|.+++.++.++++++|+||||+|+|++|+|||||+|||+||++|+|..+..+..++ .+|+|++|+
T Consensus         2 ~~i~~~~v~S~I~~P~~~~~v~~~~~~v~i~G~A~~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~   81 (131)
T PF03404_consen    2 YPINEMPVNSVITSPSDGETVKAGDGTVTIRGYAWSGGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWE   81 (131)
T ss_dssp             CB--B---EEEEEESBTTEEEESESEEEEEEEEEE-STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEE
T ss_pred             cchhhcCCCEEEEecCCCCEEccCCcEEEEEEEEEeCCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceee
Confidence            5899999999999999999998633699999999999888999999999999999999999987532111 279999999


Q ss_pred             EEeecCC
Q psy11686        363 ATIPVDP  369 (939)
Q Consensus       363 ~~~~~~~  369 (939)
                      ++|++++
T Consensus        82 ~~~~~~~   88 (131)
T PF03404_consen   82 YDWPPPS   88 (131)
T ss_dssp             EEEEECS
T ss_pred             eccCcCc
Confidence            9999987

MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....

>PRK05363 TMAO/DMSO reductase; Reviewed

Probab=99.90  E-value=3.9e-24  Score=231.78  Aligned_cols=146  Identities=12%  Similarity=-0.007  Sum_probs=122.2

Q ss_pred             cccCCCCceEee-----------------EEEEEeecccCCcceeeeHHHHHHhccc-------eeccccC--ccCcccc
Q psy11686        145 FLTPSLLSQVGS-----------------STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNIS--QEDSKLA  198 (939)
Q Consensus       145 ~~TP~~~~~v~~-----------------w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~~--~~~~~~~  198 (939)
                      .+|+...||.-.                 |+|+|+ |+|++ |.+||++||++.||+       +|+++|+  ..|+|++
T Consensus        73 ~~t~ynnFYef~t~k~dp~~~~~~~~~~~W~L~V~-G~V~k-P~~ltldDL~~~~P~~eri~~l~CVegWs~~~~W~Gvp  150 (319)
T PRK05363         73 DVTTYNNFYEFGTDKADPARNAGSLKTDPWTVKID-GEVEK-PGTLDIDDLLKLFPLEERIYRLRCVEAWSMVIPWIGFP  150 (319)
T ss_pred             HcCCCCCeEEecCCcCChhHhcCcCCCCCeEEEEe-eecCC-CeEEEHHHHHhcCCCeEEEEEEEEcCCCceeeEEEeeE
Confidence            478888899764                 999999 99998 999999999944898       9999987  6899999


Q ss_pred             HHHHHhCCCCC------------C--------------CC--CcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC-
Q psy11686        199 AKDIASDPYVM------------E--------------PV--RSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF-  243 (939)
Q Consensus       199 ~~~vL~~~g~~------------d--------------~~--~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg-  243 (939)
                      +++||+.+|+.            |              ++  ||||++||++     |+|||||||++ |||||||||| 
T Consensus       151 L~dLLe~agp~~~AkyV~f~s~~d~~~~~g~~~~~~~~pY~~~LpL~eAm~p~tlLA~~mnGepLp~qhG~PlRLVVPg~  230 (319)
T PRK05363        151 LAKLLKRVEPTSNAKYVAFETLYDPEQMPGQRSRFLDWPYVEGLRLDEAMHPLTLLAVGLYGKTLPNQNGAPIRLVVPWK  230 (319)
T ss_pred             HHHHHHHcCCCCCCcEEEEEecCccccccCCcccccCCCeeccccHHHHhCccceehhhhCCcCCchhhCCceEEEeCCc
Confidence            99999999974            1              22  5999999998     99999999999 9999999999 


Q ss_pred             -----cceeeeEEEeecCCCCcccccCCCc--cCCCCCCCCccCCCCCCcccccceEEEEe
Q psy11686        244 -----CSHTGKVILSDHESTSHWQQNDYKG--FSPSTDWDTVDFAKSPAIQELPVISAICL  297 (939)
Q Consensus       244 -----vKWl~~I~~~~~~~~g~w~~~~Y~~--~~~~~~~~~~~~~~~~~i~~~~v~S~I~~  297 (939)
                           ||||.+|+|++++.+||||+++|..  +..++++.     -.-|-|++...+.|..
T Consensus       231 YG~KsvKWI~~Ie~~~~~~~g~We~~~~~eygfyanvnp~-----v~hPrwsqa~er~ig~  286 (319)
T PRK05363        231 YGFKSIKSIVRIRLTEEQPPTTWNLLAPNEYGFYANVNPN-----VDHPRWSQATERRIGE  286 (319)
T ss_pred             eeeecceeeeEEEEEeCCCCCchhccCccccceeeecCCC-----CCCCccccchhceecc
Confidence                 9999999999999999999998764  22333221     1135567777777753

>cd02109 arch_bact_SO_family_Moco bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=99.88  E-value=5.3e-23  Score=210.55  Aligned_cols=113  Identities=14%  Similarity=0.142  Sum_probs=103.2

Q ss_pred             eEEEEEeecccCCcceeeeHHHHHHhccc-------eecccc---CccCccccHHHHHhCCCCCC-----------C--C
Q psy11686        156 SSTITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNI---SQEDSKLAAKDIASDPYVME-----------P--V  212 (939)
Q Consensus       156 ~w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~---~~~~~~~~~~~vL~~~g~~d-----------~--~  212 (939)
                      +|+|+|+ |+|++ |++||++||+ +||+       +|++++   ..+|+|+++++||+.+|+.+           .  .
T Consensus        26 ~~~L~V~-G~v~~-p~~ltl~dL~-~lp~~~~~~~~~C~~~w~~~~~~w~Gv~L~dlL~~ag~~~~a~~V~~~a~DgY~~  102 (180)
T cd02109          26 KWRLRVT-GLVEN-PLSLTYEDLL-ALPQTEYTADFHCVTGWSKLDVVWEGVSLKDLLEAARPDPEATFVMAHSYDGYTT  102 (180)
T ss_pred             CeEEEEE-eecCC-ceEEEHHHHh-CCCCEEEEEEEEecCCCcccCcEEEeeEHHHHHHHcCCCCCCeEEEEEecCCceE
Confidence            4999999 99998 9999999999 8999       899875   36799999999999999862           2  2


Q ss_pred             CcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCC
Q psy11686        213 RSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSP  271 (939)
Q Consensus       213 ~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~  271 (939)
                      +||+++++++     |+||||||+.+ |||+|||+||      +|||++|+|++++.+||||++||+...+
T Consensus       103 ~ipl~~~~~~~~iLA~~~nG~pL~~~~GgPlrlv~P~~~G~k~vKwl~~I~~~~~~~~g~we~~gy~~~~~  173 (180)
T cd02109         103 NLPLEDLLREDSLLATKMDGEPLPPEHGGPARLVVPHLYFWKSAKWLRGIEFLDEDEPGFWERRGYHERGD  173 (180)
T ss_pred             EeEHHHhcCCCeEEEEeeCCeECChhcCceEEEEeCCeeeeeCceECCEEEEEeCCCCCcccccCcCCCCC
Confidence            5999999986     99999999999 9999999999      9999999999999999999999997554

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.

>cd02107 YedY_like_Moco YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=99.87  E-value=1.7e-22  Score=209.89  Aligned_cols=133  Identities=16%  Similarity=0.193  Sum_probs=103.0

Q ss_pred             ccHHHHhh-ccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCC---
Q psy11686        403 FAEEKVRT-FNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSAD---  475 (939)
Q Consensus       403 f~~~~l~~-~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d---  475 (939)
                      |+++||++ ||+++++++++|+++               |+.    |++|+||+|+|||+.||++++|++   +|.|   
T Consensus        42 ltl~eL~~~lP~~~~~~~l~Cv~g---------------Ws~----~a~W~GV~L~dlLe~ag~~~~A~~V~f~~~d~~~  102 (218)
T cd02107          42 LDIDDLMKTFPLEERIYRFRCVEG---------------WSM----VVPWVGFPLAALLARAEPTSEAKYVRFTTLLDKE  102 (218)
T ss_pred             EEHHHHHhcCCCeEEEEEEEEeCC---------------Ccc----eeEEEeeEHHHHHHHcCCCCCCCEEEEEecCccc
Confidence            56667777 899999999999863               542    799999999999999999999988   4443   


Q ss_pred             --------------CceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCcee
Q psy11686        476 --------------VQHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSY  529 (939)
Q Consensus       476 --------------~~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y  529 (939)
                                    .-.+++++ ++||++      +||||||+++|||||||||||+|+..      +|++.++++...|
T Consensus       103 ~~~g~~g~~~~~~~~Y~~slpl-~~Al~~~~LLAy~mNGepLp~~HG~PlRLVVPg~yG~ksvKWL~~Iev~~~~~~GyW  181 (218)
T cd02107         103 QMPGQSGLFGVLPWPYVEGLRL-DEAMHPLTLLAVGLYGEALPKQNGAPIRLVVPWKYGFKSIKSIVKIEFTKEQPPTTW  181 (218)
T ss_pred             cccCCccccccccCCcccceeH-HHhhCcccEEEeeeCCcCCcHhhCCceEEEeCCeeeeEcceeeeEEEEEeCCCCCcc
Confidence                          12467888 899997      99999999999999999999999654      7778877764443


Q ss_pred             ecC--CC----CC-CCCCCccccccccceeecC
Q psy11686        530 NTQ--PE----NG-HPSGYQPRATLQGARLLTR  555 (939)
Q Consensus       530 ~~~--~~----~~-~~~~~~~i~~m~V~SlI~~  555 (939)
                      ...  ++    .. .+.+-.|.++|.|+|+|+.
T Consensus       182 e~~~~~~~~~y~~~~~~~~~~~~~~~~~~~i~~  214 (218)
T cd02107         182 NLAAPDEYGFYANVNPSVDHPRWSQATERRIGE  214 (218)
T ss_pred             cccCcccccccccCCCCCCCCccccceeeeecc
Confidence            331  00    00 1122278999999999864

Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY, which is likely membrane-anchored by a heme-containing trans-membrane subunit YedZ. Preliminary results indicate that YedY may represent a new type of membrane-associated bacterial reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>COG2041 Sulfite oxidase and related enzymes [General function prediction only]

Probab=99.83  E-value=1.9e-20  Score=203.24  Aligned_cols=111  Identities=18%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             EEEEEeecccCCcceeeeHHHHHHhccc-------eeccccCc---cCccccHHHHHhCCCCCC-----------C----
Q psy11686        157 STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNISQ---EDSKLAAKDIASDPYVME-----------P----  211 (939)
Q Consensus       157 w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~~~---~~~~~~~~~vL~~~g~~d-----------~----  211 (939)
                      |+|+|+ |+|++ |++||++||+ +||+       +|++||+.   .|.|+++++||+.+|+.+           .    
T Consensus        95 w~l~V~-G~V~~-p~~~t~~dl~-~~p~~~~~~~~~Cv~~Ws~~~~~W~Gv~l~~lL~~~~p~~~A~~V~f~~~d~~~y~  171 (271)
T COG2041          95 WRLRVD-GLVEK-PLTLTYEDLL-ALPLEERIYTFHCVEGWSMVDAPWTGVPLRELLDRAGPKDNAKYVMFHSLDGPDYT  171 (271)
T ss_pred             eEEEEe-eeecC-cceecHHHHh-hCCcccEEEEEEEecCceEeecceeeeeHHHHHHHhCcCCCCeEEEEEccCccccc
Confidence            999999 99999 9999999999 5999       99999983   799999999999999862           2    


Q ss_pred             CCcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccC
Q psy11686        212 VRSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFS  270 (939)
Q Consensus       212 ~~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~  270 (939)
                      .++||++||++     |+|||+|||++ |||+|||||+      +|||.+|+|++++..|||+..||....
T Consensus       172 ~~l~l~~a~~p~~llA~~~~G~~Lp~~~G~PlRLvvp~~yg~k~~K~l~~I~l~~~~~~g~We~~gy~~~g  242 (271)
T COG2041         172 TGLPLDDALHPLTLLAYGMNGEPLPPENGAPLRLVVPGKYGWKSAKWLVRIELTDKPPDGYWERNGYHEYG  242 (271)
T ss_pred             cCCCHHHhcCcHhhHHHHhcCccCccccCCceEEEecchhcccCceEEEEEEEecCCCCCchhhcCccccC
Confidence            36999999999     99999999999 9999999999      999999999999999999999998754

>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes

Probab=99.82  E-value=8.4e-21  Score=186.82  Aligned_cols=96  Identities=24%  Similarity=0.299  Sum_probs=77.7

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCC-CHHHHHHHhhhcCCCceeeee-----EEEEEcCeeeccccceecccccccCC-C
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHL-GTDETFATLDFEGLFRSMPIP-----FTLLFSANFFRNLARITTLRIDVTTD-G  909 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~eitt~R~e~~~~-~  909 (939)
                      |+|||||||+|| ++++|+||++++ .++++.+++...+. +.+..+     +++..++..+    ||+++|+|.|+. +
T Consensus        20 ylVGG~VRD~Llg~~~~DiDi~v~~~~~~~~~~l~~~~~~-~~v~~~~~f~t~~v~~~~~~~----di~~~R~e~~~~~~   94 (139)
T cd05398          20 YLVGGAVRDLLLGRPPKDIDIATDADGPEFAEALFKKIGG-RVVGLGEEFGTATVVINGLTI----DVATLRTETYTDPG   94 (139)
T ss_pred             EEECChHHHHHcCCCCCCceEEEeCCCHHHHHHHHHhcCC-cEEecCCcccEEEEEECCEEE----EEcccccccccCCC
Confidence            899999999999 899999999999 77778888765442 444432     6777788888    999999999954 4


Q ss_pred             CccccccCCCHHHHhhcCCchhhhcCccCC
Q psy11686        910 RHAEVQFTEDWKLDANRRDLTVNSMFLGMK  939 (939)
Q Consensus       910 r~~~v~~~~~l~~Dl~RRDFTINAma~~l~  939 (939)
                      +++.+.. .++++||.||||||||||+++.
T Consensus        95 ~~p~~~~-~~~~~Dl~RRDFTINAmA~~~~  123 (139)
T cd05398          95 RRPPVVG-FTIEEDLLRRDFTINAMAYDLD  123 (139)
T ss_pred             CCCcccC-CCCHHHHhhcCcchhheEecCC
Confidence            5544444 4788999999999999999973

CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io

>PF00174 Oxidored_molyb: Oxidoreductase molybdopterin binding domain; InterPro: IPR000572 A number of different eukaryotic oxidoreductases that require and bind a molybdopterin cofactor have been shown [] to share a few regions of sequence similarity

Probab=99.81  E-value=4.2e-21  Score=195.35  Aligned_cols=105  Identities=23%  Similarity=0.271  Sum_probs=86.3

Q ss_pred             eEEEEEeecccCCcceeeeHHHHHHhccc-------eeccc------c------CccCccccHHHHHhCCCCC-------
Q psy11686        156 SSTITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGN------I------SQEDSKLAAKDIASDPYVM-------  209 (939)
Q Consensus       156 ~w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn------~------~~~~~~~~~~~vL~~~g~~-------  209 (939)
                      +|+|+|+ |+|++ |.+||++||+ +||+       +|++|      +      ...|+|+++++||+.+|+.       
T Consensus        14 ~~~l~V~-G~v~~-~~~ltl~dL~-~lp~~~~~~~~~c~~~~~~~~~w~~~~i~~~~~~GV~L~dlL~~ag~~~~a~~V~   90 (169)
T PF00174_consen   14 SWTLTVS-GLVEN-PLTLTLADLK-ALPQVTQTVTLHCVGNRRAGFPWSAGAIGNAEWTGVPLSDLLEKAGIKPDAKYVV   90 (169)
T ss_dssp             T-EEEEE-ESBSS-EEEEEHHHHH-HS-EEEEEEEEEETTTTHHSHHCCSTSEEEEEEEEEEHHHHHHHHTB-TT-EEEE
T ss_pred             CEEEEEE-eecCC-ceEecHHHHh-CCcCeEEEEEEEecCCCccCccccccceeeeeeEEEcHHHHHHHcCCCCCccEEE
Confidence            3999999 99998 9999999999 8999       89999      4      3479999999999999986       


Q ss_pred             ----C-------CC--CcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccc
Q psy11686        210 ----E-------PV--RSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQ  263 (939)
Q Consensus       210 ----d-------~~--~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~  263 (939)
                          |       +|  ++|++++++.     |+|||+||+.+ |+|+|||+|+      ||||++|+|++++++||||+
T Consensus        91 ~~~~D~~~~~~~gY~~~l~~~~~~~~~~iLA~~~nG~pL~~~~GgPlrlvvP~~~g~~~vKwv~~Ie~~~~~~~g~we~  169 (169)
T PF00174_consen   91 FTGADGYPMTHDGYSVSLPLEDALEEDVILAYEMNGEPLPPEHGGPLRLVVPGKYGYRSVKWVSRIEVTDEESPGYWEE  169 (169)
T ss_dssp             EEESCETTCTTSSEEEEEEHHHHHSTCSEEEEEETTEE--GGGTTT-EEE-TTBBGGGS-BSEEEEEEESS---SHHHH
T ss_pred             EEEcCCCcccCCCeEEEEEHHHhhcCCeEEEEccCCccccccccCcEEEecCCeEccCCceECCEEEEEeCCCCCCccC
Confidence                3       32  5999999996     99999999999 9999999999      99999999999999999985

These enzymes include xanthine dehydrogenase (1.1.1.204 from EC), aldehyde oxidase (1.2.3.1 from EC), nitrate reductase (1.7.1.1 from EC), and sulphite oxidase (1.8.3.1 from EC). The multidomain redox enzyme NAD(P)H:nitrate reductase (NR) catalyses the reduction of nitrate to nitrite in a single polypeptide electron transport chain with electron flow from NAD(P)H-FAD-cytochrome b5-molybdopterin-NO(3). Three forms of NR are known, an NADH-specific enzyme found in higher plants and algae (1.7.1.1 from EC); an NAD(P)H-bispecific enzyme found in higher plants, algae and fungi (1.7.1.2 from EC); and an NADPH-specific enzyme found only in fungi (1.7.1.3 from EC) []. The mitochondrial enzyme sulphite oxidase (sulphite:ferricytochrome c oxidoreductase; 1.8.2.1 from EC) catalyses oxidation of sulphite to sulphate, using cytochrome c as the physiological electron acceptor. Sulphite oxidase consists of two structure/function domains, an N-terminal haem domain, similar to cytochrome b5; and a C-terminal molybdopterin domain [].; GO: 0009055 electron carrier activity, 0055114 oxidation-reduction process; PDB: 1XDY_I 1XDQ_E 2A9A_B 3R19_A 2A9D_A 3HBQ_A 2A9C_B 3HBG_A 2A9B_A 1SOX_B ....

>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2

Probab=99.81  E-value=2.7e-20  Score=180.39  Aligned_cols=96  Identities=20%  Similarity=0.321  Sum_probs=73.6

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-----EEEEEcCeeeccccceecccccccC-CCC
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-----FTLLFSANFFRNLARITTLRIDVTT-DGR  910 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~eitt~R~e~~~-~~r  910 (939)
                      |||||||||+|| ++++|+||++++.|+++.+.+..... .....+     +++..++..+    ||+++|.|.|. +++
T Consensus         2 ylVGG~VRD~Llg~~~~DiDi~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~----di~~~r~~~~~~~~~   76 (126)
T PF01743_consen    2 YLVGGAVRDLLLGRPPKDIDIVTNADPEEFAKLLAKKLG-GVFVVGKRFGTVRVVFGGGSI----DIASFRGEFYIGDGR   76 (126)
T ss_dssp             EEETHHHHHHHHTS--SEEEEEESS-HHHHHHHHCTTCC-EEEEEETTTTEEEEEETTCEE----EEEE-ECE--SSSSS
T ss_pred             EEecHHHHHHHcCCCCCCeEEEEeCCHHHHHHHHHhhcc-cccccccccceeeecCCCccc----ccccccccccccccc
Confidence            799999999999 89999999999999999999987653 222223     7777777777    99999999884 455


Q ss_pred             cc-ccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        911 HA-EVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       911 ~~-~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      ++ .+.+..++++||+||||||||||+++
T Consensus        77 ~~~~~~~~~~i~~Dl~rRDFTiNAla~~~  105 (126)
T PF01743_consen   77 NPDVVEFGPTIEEDLKRRDFTINALAYDL  105 (126)
T ss_dssp             --CCCCCSSTHHHHHCTSSBGGGSEEEEC
T ss_pred             ccccccccCCHHHHHHhcCCeehheeEEC
Confidence            53 45667799999999999999999985

7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....

>KOG0537|consensus

Probab=99.79  E-value=7.4e-20  Score=175.16  Aligned_cols=83  Identities=30%  Similarity=0.656  Sum_probs=76.4

Q ss_pred             CCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccccc
Q psy11686         19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNI   97 (939)
Q Consensus        19 ~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~l   97 (939)
                      ..++|+.+||++||++ ++|||+|+|+|||||.|+++|||| +.|+.+||+|++.+|  ...+||..|++||++|+||.+
T Consensus         3 ~~k~~~~~EV~kHn~~-~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F--~~~gHS~~A~~ml~~y~ig~~   79 (124)
T KOG0537|consen    3 DLKYYTLSEVAKHNKK-DDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAF--EDVGHSKDAREMLEEYYIGEV   79 (124)
T ss_pred             ccccccHHHHHhhcCC-CCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhc--cccCCcHHHHHHhhhcccccc
Confidence            5689999999999987 599999999999999999999999 999999999999888  467799999999999999999


Q ss_pred             Cccchhh
Q psy11686         98 SQEDSKL  104 (939)
Q Consensus        98 ~~~~~~~  104 (939)
                      .+.+...
T Consensus        80 ~~~~~~~   86 (124)
T KOG0537|consen   80 PTTARPV   86 (124)
T ss_pred             cCCCccc
Confidence            8877643

>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=6.5e-20  Score=212.11  Aligned_cols=92  Identities=21%  Similarity=0.346  Sum_probs=82.7

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-----EEEEEcCeeeccccceeccccccc-CCCC
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-----FTLLFSANFFRNLARITTLRIDVT-TDGR  910 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~eitt~R~e~~-~~~r  910 (939)
                      |||||||||+|| ++++|+||+|++.|+++..++...     .++|     +++..+|+.+    ||+|||+++| ++++
T Consensus        26 ylVGGaVRD~LLG~~~~D~Diat~~~p~~~~~~~~~~-----~~~G~~f~t~~v~~~~~~~----ev~T~R~~~~~~~~~   96 (412)
T COG0617          26 YLVGGAVRDLLLGRPPKDVDIATNATPEEVKKLFRNT-----RPVGRKFGTVTVPFNGEII----EVTTFRKEGYGYNGR   96 (412)
T ss_pred             EEeCcHHHHHHcCCCCcceeeeCCCCCHHHHHHHhhh-----hhhhhhcCeEEeccCCEEE----EEEEeecCCCCcCCC
Confidence            999999999999 899999999999999999999822     2233     7777777777    9999999996 8899


Q ss_pred             ccccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        911 HAEVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       911 ~~~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      +.++++..+|++||.||||||||||||.
T Consensus        97 ~~~~~~~~tleeDl~RRDFTINAla~~~  124 (412)
T COG0617          97 PLPVVFPGTLEEDLKRRDFTINALAYDP  124 (412)
T ss_pred             cCCcCCCCCHHHHHHHhcccHHhhccCC
Confidence            9999999999999999999999999875

>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase

Probab=99.78  E-value=1.3e-19  Score=212.17  Aligned_cols=96  Identities=25%  Similarity=0.270  Sum_probs=84.3

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-----EEEEEcCeeeccccceecccccccC-CCC
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-----FTLLFSANFFRNLARITTLRIDVTT-DGR  910 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~eitt~R~e~~~-~~r  910 (939)
                      |+|||||||+|| ++++|+||+|++.|+++.++|...+. +++++|     +++..+|..+    |||++|+|.|+ ++|
T Consensus        31 y~VGG~VRD~llg~~~~D~Di~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~v~~~~~~~----ei~~~r~e~~~~~~~  105 (466)
T TIGR02692        31 YLVGGSVRDALLGRLGHDLDFTTDARPEETLAILRPWAD-AVWDTGIAFGTVGAEKDGQQI----EITTFRSDSYDGTSR  105 (466)
T ss_pred             EEeCcHHHHHHcCCCCCCEEEEeCCCHHHHHHHHHHhhh-hccccCcccceEEEEECCcEE----EEEecccccCcCCCC
Confidence            999999999999 89999999999999999999976542 444444     6777788888    99999999984 566


Q ss_pred             ccccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        911 HAEVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       911 ~~~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      ++.|.|+.+|++||+||||||||||+|+
T Consensus       106 ~~~v~~~~~i~~Dl~rRDFTiNA~a~~~  133 (466)
T TIGR02692       106 KPEVTFGDTLEGDLIRRDFTVNAMAVRI  133 (466)
T ss_pred             CCcccCCCCHHHHHHhccccHHHhhccc
Confidence            6889999999999999999999999987

The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.

>PRK13299 tRNA CCA-pyrophosphorylase; Provisional

Probab=99.77  E-value=4e-19  Score=203.02  Aligned_cols=95  Identities=21%  Similarity=0.303  Sum_probs=80.6

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCce-eeee-EEEEEcCeeeccccceeccccc-ccCCCCc-c
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRS-MPIP-FTLLFSANFFRNLARITTLRID-VTTDGRH-A  912 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~eitt~R~e-~~~~~r~-~  912 (939)
                      |+|||||||+|| ++++|+||+|++.|+++.+.|....  .. ...| +++..+|..+    ||+|+|.| .|+|+|+ .
T Consensus        24 ylVGG~VRD~LLg~~~~DiDi~~~~~~~~~~~~~~~~~--~~g~~~gt~~v~~~~~~~----ei~t~R~e~~~~d~~~p~   97 (394)
T PRK13299         24 YFVGGSVRDYLLGRPIHDVDIATSAYPEEVKAIFPRTV--DVGIEHGTVLVLENGEEY----EVTTFRTESEYVDYRRPS   97 (394)
T ss_pred             eeccchHHHHHcCCCCCCEEEecCCCHHHHHHHhhhhh--hccccCCEEEEEECCEEE----EEEeeccccCccCCCCCc
Confidence            999999999999 8999999999999999999887321  11 1123 6777788888    99999998 5678888 5


Q ss_pred             ccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        913 EVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       913 ~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      .+.|..+|++||.||||||||||+++
T Consensus        98 ~~~~~~~i~eDl~RRDFTINAma~~~  123 (394)
T PRK13299         98 EVTFVRSLEEDLKRRDFTINAIAMDE  123 (394)
T ss_pred             cccCCCCHHHHHHhccccHHHhhcCC
Confidence            67888999999999999999999986

>PRK11623 pcnB poly(A) polymerase I; Provisional

Probab=99.76  E-value=6.8e-19  Score=201.44  Aligned_cols=96  Identities=16%  Similarity=0.262  Sum_probs=75.6

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-EEEEEcCeeeccccceecccccccC-CCCccc-
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-FTLLFSANFFRNLARITTLRIDVTT-DGRHAE-  913 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~eitt~R~e~~~-~~r~~~-  913 (939)
                      |||||||||+|| ++|+|+||+|++.|+++.++|..++.+. ...+ +++.+++..+    ||+|||.+.+. +++++. 
T Consensus        70 YLVGG~VRDlLLG~~pkD~DIaT~A~peev~~lf~~~r~iG-rrF~~~hV~~~~~~i----EVaTfR~~~~~~~~~~~~~  144 (472)
T PRK11623         70 YLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVG-RRFRLAHVMFGPEII----EVATFRGHHEGNESDRNTS  144 (472)
T ss_pred             EEeChHHHHHHcCCCCCCEEEecCCCHHHHHHHhhhCeeec-CCCCEEEEEECCceE----EEecccccccccccccccc
Confidence            999999999999 8999999999999999999997544211 0111 6777888888    99999998653 233211 


Q ss_pred             ----------cccCCCHHHHhhcCCchhhhcCccC
Q psy11686        914 ----------VQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       914 ----------v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                                ..+..+|++||.||||||||||||+
T Consensus       145 ~~~~~g~~~rdn~~gtieeDl~RRDFTINALayd~  179 (472)
T PRK11623        145 QRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSV  179 (472)
T ss_pred             ccCCCCceecccCCCCHHHHHHhccccHHHheecC
Confidence                      1234589999999999999999996

>PF00174 Oxidored_molyb: Oxidoreductase molybdopterin binding domain; InterPro: IPR000572 A number of different eukaryotic oxidoreductases that require and bind a molybdopterin cofactor have been shown [] to share a few regions of sequence similarity

Probab=99.75  E-value=2.3e-19  Score=182.59  Aligned_cols=118  Identities=25%  Similarity=0.439  Sum_probs=94.5

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCC----
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSAD----  475 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d----  475 (939)
                      |+++||++||+++..++++|++|+|+         |.+|+.|+||+++|+||+|+|||++||+++++.+   .|.|    
T Consensus        29 ltl~dL~~lp~~~~~~~~~c~~~~~~---------~~~w~~~~i~~~~~~GV~L~dlL~~ag~~~~a~~V~~~~~D~~~~   99 (169)
T PF00174_consen   29 LTLADLKALPQVTQTVTLHCVGNRRA---------GFPWSAGAIGNAEWTGVPLSDLLEKAGIKPDAKYVVFTGADGYPM   99 (169)
T ss_dssp             EEHHHHHHS-EEEEEEEEEETTTTHH---------SHHCCSTSEEEEEEEEEEHHHHHHHHTB-TT-EEEEEEESCETTC
T ss_pred             ecHHHHhCCcCeEEEEEEEecCCCcc---------CccccccceeeeeeEEEcHHHHHHHcCCCCCccEEEEEEcCCCcc
Confidence            56667777899999999999999985         8899999999999999999999999999988877   7888    


Q ss_pred             ---CceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCceee
Q psy11686        476 ---VQHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDSSYN  530 (939)
Q Consensus       476 ---~~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~~y~  530 (939)
                         .-+.++++ +.|++.      +|||+||+++||+|+|+|+|+.++      ..+|++.+.+....|+
T Consensus       100 ~~~gY~~~l~~-~~~~~~~~iLA~~~nG~pL~~~~GgPlrlvvP~~~g~~~vKwv~~Ie~~~~~~~g~we  168 (169)
T PF00174_consen  100 THDGYSVSLPL-EDALEEDVILAYEMNGEPLPPEHGGPLRLVVPGKYGYRSVKWVSRIEVTDEESPGYWE  168 (169)
T ss_dssp             TTSSEEEEEEH-HHHHSTCSEEEEEETTEE--GGGTTT-EEE-TTBBGGGS-BSEEEEEEESS---SHHH
T ss_pred             cCCCeEEEEEH-HHhhcCCeEEEEccCCccccccccCcEEEecCCeEccCCceECCEEEEEeCCCCCCcc
Confidence               55688888 788885      999999999999999999998874      4699999888766553

These enzymes include xanthine dehydrogenase (1.1.1.204 from EC), aldehyde oxidase (1.2.3.1 from EC), nitrate reductase (1.7.1.1 from EC), and sulphite oxidase (1.8.3.1 from EC). The multidomain redox enzyme NAD(P)H:nitrate reductase (NR) catalyses the reduction of nitrate to nitrite in a single polypeptide electron transport chain with electron flow from NAD(P)H-FAD-cytochrome b5-molybdopterin-NO(3). Three forms of NR are known, an NADH-specific enzyme found in higher plants and algae (1.7.1.1 from EC); an NAD(P)H-bispecific enzyme found in higher plants, algae and fungi (1.7.1.2 from EC); and an NADPH-specific enzyme found only in fungi (1.7.1.3 from EC) []. The mitochondrial enzyme sulphite oxidase (sulphite:ferricytochrome c oxidoreductase; 1.8.2.1 from EC) catalyses oxidation of sulphite to sulphate, using cytochrome c as the physiological electron acceptor. Sulphite oxidase consists of two structure/function domains, an N-terminal haem domain, similar to cytochrome b5; and a C-terminal molybdopterin domain [].; GO: 0009055 electron carrier activity, 0055114 oxidation-reduction process; PDB: 1XDY_I 1XDQ_E 2A9A_B 3R19_A 2A9D_A 3HBQ_A 2A9C_B 3HBG_A 2A9B_A 1SOX_B ....

>TIGR01942 pcnB poly(A) polymerase

Probab=99.73  E-value=2.6e-18  Score=194.49  Aligned_cols=96  Identities=18%  Similarity=0.300  Sum_probs=77.2

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-EEEEEcCeeeccccceeccccccc----CCCCc
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-FTLLFSANFFRNLARITTLRIDVT----TDGRH  911 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~eitt~R~e~~----~~~r~  911 (939)
                      |||||||||+|| ++++|+||+|++.|+++.++|.....+.. ..+ +++.+++..+    ||+|||.+.+    .+++.
T Consensus        33 YlVGG~VRDlLLG~~pkD~DIat~a~peei~~lf~~~~~iG~-rf~~~~v~~~~~~i----EvatfR~~~~~~~~~~g~~  107 (410)
T TIGR01942        33 YIVGGAVRDLLLGIEPKDFDVVTSATPEEVRKLFRNSRIVGR-RFRLVHVSFGRQII----EVATFRSGHKSSVNAEGRI  107 (410)
T ss_pred             EEECHHHHHHHcCCCCCCEEEEcCCCHHHHHHHhhhCeecCC-CCCEEEEEECCEEE----EEecccccccCCCCCCCCc
Confidence            999999999999 89999999999999999999975432110 011 7777888888    9999999643    34555


Q ss_pred             cccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        912 AEVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       912 ~~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      .......+|++||.||||||||||||+
T Consensus       108 ~~d~~~gtieeDl~RRDFTINALayd~  134 (410)
T TIGR01942       108 LKDNVYGTLEEDAWRRDFTVNALYYDP  134 (410)
T ss_pred             ccccccCCHHHHhhcCCchhhheeecC
Confidence            444445799999999999999999986

This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).

>PRK05363 TMAO/DMSO reductase; Reviewed

Probab=99.71  E-value=1e-17  Score=182.01  Aligned_cols=133  Identities=16%  Similarity=0.211  Sum_probs=99.4

Q ss_pred             ccHHHHhh-ccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCC---
Q psy11686        403 FAEEKVRT-FNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSAD---  475 (939)
Q Consensus       403 f~~~~l~~-~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d---  475 (939)
                      |+++||++ +|+++++++++|+.+               |+    +|+.|+||+|+|||++||+++.|++   ++.+   
T Consensus       116 ltldDL~~~~P~~eri~~l~CVeg---------------Ws----~~~~W~GvpL~dLLe~agp~~~AkyV~f~s~~d~~  176 (319)
T PRK05363        116 LDIDDLLKLFPLEERIYRLRCVEA---------------WS----MVIPWIGFPLAKLLKRVEPTSNAKYVAFETLYDPE  176 (319)
T ss_pred             EEHHHHHhcCCCeEEEEEEEEcCC---------------Cc----eeeEEEeeEHHHHHHHcCCCCCCcEEEEEecCccc
Confidence            44455555 678899999999863               55    3899999999999999999999987   4421   


Q ss_pred             -----------C-ceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeec
Q psy11686        476 -----------V-QHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNT  531 (939)
Q Consensus       476 -----------~-~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~  531 (939)
                                 . -..++++ ++||++      +|||||||++||+|||+||||+||..      +|++.+++..+.|+.
T Consensus       177 ~~~g~~~~~~~~pY~~~LpL-~eAm~p~tlLA~~mnGepLp~qhG~PlRLVVPg~YG~KsvKWI~~Ie~~~~~~~g~We~  255 (319)
T PRK05363        177 QMPGQRSRFLDWPYVEGLRL-DEAMHPLTLLAVGLYGKTLPNQNGAPIRLVVPWKYGFKSIKSIVRIRLTEEQPPTTWNL  255 (319)
T ss_pred             cccCCcccccCCCeeccccH-HHHhCccceehhhhCCcCCchhhCCceEEEeCCceeeecceeeeEEEEEeCCCCCchhc
Confidence                       0 2256776 899987      99999999999999999999999754      777877766444443


Q ss_pred             C-C------CCCCCCCCccccccccceeecC
Q psy11686        532 Q-P------ENGHPSGYQPRATLQGARLLTR  555 (939)
Q Consensus       532 ~-~------~~~~~~~~~~i~~m~V~SlI~~  555 (939)
                      . +      .+..+..--|.|.++..+.|+.
T Consensus       256 ~~~~eygfyanvnp~v~hPrwsqa~er~ig~  286 (319)
T PRK05363        256 LAPNEYGFYANVNPNVDHPRWSQATERRIGE  286 (319)
T ss_pred             cCccccceeeecCCCCCCCccccchhceecc
Confidence            1 0      1111223357888899999886

>cd02109 arch_bact_SO_family_Moco bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=99.66  E-value=9.6e-17  Score=164.52  Aligned_cols=110  Identities=16%  Similarity=0.262  Sum_probs=92.4

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCCcee
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADVQHV  479 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~~~~  479 (939)
                      |++++|++||+++++.+++|+++               |+   ++|++|+||+|+|||++||+++++.+   .+.|.-..
T Consensus        41 ltl~dL~~lp~~~~~~~~~C~~~---------------w~---~~~~~w~Gv~L~dlL~~ag~~~~a~~V~~~a~DgY~~  102 (180)
T cd02109          41 LTYEDLLALPQTEYTADFHCVTG---------------WS---KLDVVWEGVSLKDLLEAARPDPEATFVMAHSYDGYTT  102 (180)
T ss_pred             EEHHHHhCCCCEEEEEEEEecCC---------------Cc---ccCcEEEeeEHHHHHHHcCCCCCCeEEEEEecCCceE
Confidence            56666677899999999999974               54   57899999999999999999987766   78887778


Q ss_pred             eEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcCceeec
Q psy11686        480 HVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVDSSYNT  531 (939)
Q Consensus       480 ~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~~~y~~  531 (939)
                      ++++ +.|++.      +||||||+.+||+|+|+|+||++|..      +|++.+.+....|..
T Consensus       103 ~ipl-~~~~~~~~iLA~~~nG~pL~~~~GgPlrlv~P~~~G~k~vKwl~~I~~~~~~~~g~we~  165 (180)
T cd02109         103 NLPL-EDLLREDSLLATKMDGEPLPPEHGGPARLVVPHLYFWKSAKWLRGIEFLDEDEPGFWER  165 (180)
T ss_pred             EeEH-HHhcCCCeEEEEeeCCeECChhcCceEEEEeCCeeeeeCceECCEEEEEeCCCCCcccc
Confidence            8998 788875      99999999999999999999998753      777887776555554

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.

>PRK13296 tRNA CCA-pyrophosphorylase; Provisional

Probab=99.66  E-value=6.1e-17  Score=178.66  Aligned_cols=92  Identities=23%  Similarity=0.346  Sum_probs=66.0

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCH-HHHHH-HhhhcCCCceeeeeEEEEEcCeeeccccceeccccccc-CCCCc-c
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGT-DETFA-TLDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVT-TDGRH-A  912 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~eitt~R~e~~-~~~r~-~  912 (939)
                      |+|||||||+|| ++++|+||++.+.+ ++..+ .+.  .+.+.++  + ++..+..+    |++++|.|.| .++++ .
T Consensus         4 YLVGGaVRD~LLgr~p~DiDivV~g~~~~~~l~~~~~--~vg~~f~--V-~~~~~~~~----Eiat~R~E~~~~~g~~~~   74 (360)
T PRK13296          4 YLVGGAVRDMLLGITPKDKDWVVVGATEDEMLANGFI--KIAANFP--V-FIHPQTKQ----EYALARSEKKTASGYHGF   74 (360)
T ss_pred             EEeccHHHHHHcCCCCCCeeEEecCCcHHHHHHhhhh--hcCCceE--E-EEECCeeE----EEeeccccccccCCCCCC
Confidence            899999999999 89999999876554 33322 222  2111221  1 22344455    9999999988 45565 4


Q ss_pred             ccccCC--CHHHHhhcCCchhhhcCccC
Q psy11686        913 EVQFTE--DWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       913 ~v~~~~--~l~~Dl~RRDFTINAma~~l  938 (939)
                      .|.++.  +|++||.||||||||||+|+
T Consensus        75 ~v~~~~~~tieeDL~RRDFTINAmA~d~  102 (360)
T PRK13296         75 EVNFSKYITLEDDLKRRDLTINSIAIDQ  102 (360)
T ss_pred             eEeeCCCCCHHHHHHhcCcceeeeEECC
Confidence            577754  69999999999999999985

>cd00321 SO_family_Moco Sulfite oxidase (SO) family, molybdopterin binding domain

Probab=99.64  E-value=1.6e-16  Score=159.67  Aligned_cols=97  Identities=23%  Similarity=0.246  Sum_probs=86.1

Q ss_pred             eEEEEEeecccCCcceeeeHHHHHHhccc-------eecccc-------CccCccccHHHHHhCCCCC------------
Q psy11686        156 SSTITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNI-------SQEDSKLAAKDIASDPYVM------------  209 (939)
Q Consensus       156 ~w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~-------~~~~~~~~~~~vL~~~g~~------------  209 (939)
                      +|+|+|+ |.|++ |.+||++||+ +||+       +|++|+       ...|+|+++++||+.+|+.            
T Consensus        16 ~w~l~v~-G~v~~-~~~~tl~eL~-~lp~~~~~~~~~c~~n~~~~~~~~~~~~~Gv~L~~lL~~ag~~~~~~~v~~~a~d   92 (156)
T cd00321          16 DWRLEVD-GLVEK-PLSLTLDDLK-ALPQVEVIATLHCVGNRWGGGAVSNAEWTGVPLRDLLEEAGPKPGARYVVFEGAD   92 (156)
T ss_pred             CeEEEEE-eecCC-CeEEEHHHHh-cCCCEEEEEEEEECCCCCCCccEeccEEEEEEHHHHHHHcCCCCCCeEEEEEeeC
Confidence            3999999 99998 9999999999 8999       899852       3567899999999999975            


Q ss_pred             ----CCC--CcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeec
Q psy11686        210 ----EPV--RSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDH  255 (939)
Q Consensus       210 ----d~~--~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~  255 (939)
                          |+|  ++|++++++.     |+||||||+.+ |+|+|||+|+      +|||++|+|+++
T Consensus        93 ~~~~dgY~~~i~~~~~~~~~~iLA~~~nG~pL~~~~GgPlrlv~P~~~g~k~vK~v~~Iev~~~  156 (156)
T cd00321          93 DPGGDGYTTSLPLEKALDPDVLLAYEMNGEPLPPDHGFPLRLVVPGLYGWKSVKWLRRIEVTDE  156 (156)
T ss_pred             CCCCCCEEEEEEHHHhhCCCCEEEeeeCCeECchhhCCceEEEcCCceeeEcceeeeEEEEEcC
Confidence                123  4999999976     99999999999 9999999999      999999999874

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>cd02108 bact_SO_family_Moco bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains

Probab=99.64  E-value=1.2e-16  Score=164.24  Aligned_cols=104  Identities=19%  Similarity=0.338  Sum_probs=85.1

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCC-----
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSA-----  474 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~-----  474 (939)
                      |++++|++||+++++++++|+++               |+    ++++|+||+|+|||++||+++.+++   .+.     
T Consensus        43 ltl~dL~~lp~~~~~~~~~Cv~g---------------ws----~~~~w~Gv~L~dlL~~ag~~~~a~~V~~~a~d~~~~  103 (185)
T cd02108          43 LSLEELRALPQRTQITRHICVEG---------------WS----AIGKWGGVPLRTILELVGPLPEAKYVVFKCADDFAG  103 (185)
T ss_pred             EEHHHHhCCCCEEEEEEEEEcCC---------------Cc----eEEEEEEEEHHHHHHHhCCCCCCcEEEEEecCcCCC
Confidence            56666777899999999999863               43    2579999999999999999988765   565     


Q ss_pred             -CCceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEE------EEEEecCCcC
Q psy11686        475 -DVQHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRV------RVEIWSKAVD  526 (939)
Q Consensus       475 -d~~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~------~i~~~~~~~~  526 (939)
                       |.-.+++++ ++|+++      +||||||+++||+|+|+||||+++..      +|++.+.+..
T Consensus       104 ~~~Y~~sipl-~~~~~~~~iLA~~~nGepL~~~hG~PlRLvvPg~~G~k~vKwl~~I~~~~~~~~  167 (185)
T cd02108         104 GDRYYESIDM-ASALHPQTLLAYEMNGQPLPIKNGAPLRLRVETQLGYKQAKWVTEIELVNDLPG  167 (185)
T ss_pred             CCCeEEEEEH-HHhcCCCcEEEEeeCCeECChhcCceEEEEcCCcccccCceEccEEEEEeccCc
Confidence             445588898 888876      99999999999999999999999765      6666666554

This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.

>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2

Probab=99.63  E-value=4.4e-17  Score=157.95  Aligned_cols=103  Identities=26%  Similarity=0.285  Sum_probs=74.9

Q ss_pred             cccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCe--EEeecccCeEEE-------EE
Q psy11686        544 RATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGY--QLRIAGEGTVTA-------KV  613 (939)
Q Consensus       544 i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~--~~~~~~~g~~~~-------~v  613 (939)
                      +++..||++ |++++.|+|+.+.+.++                +   +...+...+.  ...+..++++++       ++
T Consensus         3 lVGG~VRD~Llg~~~~DiDi~~~~~~~----------------~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di   63 (126)
T PF01743_consen    3 LVGGAVRDLLLGRPPKDIDIVTNADPE----------------E---FAKLLAKKLGGVFVVGKRFGTVRVVFGGGSIDI   63 (126)
T ss_dssp             EETHHHHHHHHTS--SEEEEEESS-HH----------------H---HHHHHCTTCCEEEEEETTTTEEEEEETTCEEEE
T ss_pred             EecHHHHHHHcCCCCCCeEEEEeCCHH----------------H---HHHHHHhhcccccccccccceeeecCCCccccc
Confidence            456678887 79999999999887777                4   4444443331  234777887654       58


Q ss_pred             EeeccCCCC-----------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCccc
Q psy11686        614 LSYRNRREK-----------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCA  668 (939)
Q Consensus       614 ~tfr~~~~~-----------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR  668 (939)
                      ++||.+...           .+++++||.||||||||||+++   ..|+|+|||||++||++|+||
T Consensus        64 ~~~r~~~~~~~~~~~~~~~~~~~i~~Dl~rRDFTiNAla~~~---~~~~liDp~gG~~DL~~~~iR  126 (126)
T PF01743_consen   64 ASFRGEFYIGDGRNPDVVEFGPTIEEDLKRRDFTINALAYDL---ETGKLIDPFGGLEDLKNKIIR  126 (126)
T ss_dssp             EE-ECE--SSSSS--CCCCCSSTHHHHHCTSSBGGGSEEEEC---TTTCEEESSSHHHHHHTTEE-
T ss_pred             cccccccccccccccccccccCCHHHHHHhcCCeehheeEEC---CCCeEEcCCCCHHHHHcCCCC
Confidence            899975321           2389999999999999999997   789999999999999999998

7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....

>PHA01806 hypothetical protein

Probab=99.60  E-value=8.2e-16  Score=153.87  Aligned_cols=108  Identities=11%  Similarity=0.003  Sum_probs=74.7

Q ss_pred             hHHHHhhhhccccccccchhhHHHHh------hhhcCcchhhhc-CCCCcEEEecC-CCHHHHHHHhhhcCCCceeeee-
Q psy11686        812 EVLSAIKKNLDGLHNISGERIWTELN------KILGGSFSKEMM-LKMLEINMFPH-LGTDETFATLDFEGLFRSMPIP-  882 (939)
Q Consensus       812 ~ll~ai~~i~~~L~~l~~eri~~~L~------~iVGG~VRD~LL-~~~~D~Di~~~-~~~~~~~~~~~~~~~~~~~~~~-  882 (939)
                      .+|+-++++...........+...|.      |+|||+|||+|| ++++|+||+|+ +.|+++.++....+. +.++.. 
T Consensus         7 ~~l~~~~~I~~~~is~~al~v~~~l~~~g~~aYlVGG~VRD~Llgr~~kDiDivt~~~~pe~v~~L~~klG~-k~V~~~~   85 (200)
T PHA01806          7 DLLEGTKEIPEGLIAKALLLRLYSDARHSEGVALAGGAARDLMHGAEPKDIDIALYGMDDRQAELLIGCILP-KLVSRFL   85 (200)
T ss_pred             hHhcCccccChhHcCHHHHHHHHHHHHCCcEEEEECchHHHHHcCCCCCceEEEccCCCHHHHHHHHHHhCC-ccccccc
Confidence            34444455544443334444444444      999999999999 89999999995 789888887764442 322221 


Q ss_pred             ----EE---------------------EEEcCeeeccccceecccccccCCCCccccccCCCHHHHhhcCCchhh--hcC
Q psy11686        883 ----FT---------------------LLFSANFFRNLARITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVN--SMF  935 (939)
Q Consensus       883 ----~~---------------------~~~~~~~~~~~~eitt~R~e~~~~~r~~~v~~~~~l~~Dl~RRDFTIN--Ama  935 (939)
                          ..                     ++++|..+    ||+.++.+              +|++||.|||||||  |||
T Consensus        86 ~~ggwr~~~~~~gd~~~~~~~~~l~g~~vl~g~tv----D~A~~~g~--------------sleeDL~rRDFTINq~AIA  147 (200)
T PHA01806         86 RDGGWSQEYHDGGDGGIFKGVVSLKGCRGLEGMDV----DFNYYDTD--------------SVGEVMESFDYTINQVGIA  147 (200)
T ss_pred             ccceeeeeccccccccccccceeeeeeEEeCCeEE----EeeeccCC--------------CHHHHHHHcCCccchhhhc
Confidence                11                     34456666    88887776              89999999999999  777


Q ss_pred             ccC
Q psy11686        936 LGM  938 (939)
Q Consensus       936 ~~l  938 (939)
                      |++
T Consensus       148 ~~~  150 (200)
T PHA01806        148 YNW  150 (200)
T ss_pred             ccC
Confidence            765

>KOG4576|consensus

Probab=99.59  E-value=4.3e-16  Score=145.60  Aligned_cols=86  Identities=47%  Similarity=0.981  Sum_probs=81.7

Q ss_pred             CCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCchHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccccc
Q psy11686         18 STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNI   97 (939)
Q Consensus        18 ~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~l   97 (939)
                      ++++.|+.+||++|++++++.||.+...|||||+|+..||||+.|+.+||.++++||..|..|...++.++|+.|+||+|
T Consensus        77 E~l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdKillAAG~a~dPFWalY~qHnt~eVlElLegyrIG~L  156 (167)
T KOG4576|consen   77 ESLHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDKILLAAGGALDPFWALYAQHNTSEVLELLEGYRIGEL  156 (167)
T ss_pred             hhccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcceeeeecCCCcCcHHHHHHHhhHHHHHHHHhhcccccC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cccchh
Q psy11686         98 SQEDSK  103 (939)
Q Consensus        98 ~~~~~~  103 (939)
                      ++.+..
T Consensus       157 ~~~dv~  162 (167)
T KOG4576|consen  157 NPEDVV  162 (167)
T ss_pred             Chhhcc
Confidence            888753

>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []

Probab=99.57  E-value=1.1e-15  Score=134.63  Aligned_cols=74  Identities=28%  Similarity=0.571  Sum_probs=65.4

Q ss_pred             CcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhc-CcccccC
Q psy11686         22 WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLES-YRIGNIS   98 (939)
Q Consensus        22 ~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~-~~VG~l~   98 (939)
                      +||++||++||+. ++|||+|+|+|||||+|+..|||| ..+..++|+|+|..|.  ...|+..+.++|++ |+||.|+
T Consensus         1 ~~t~~el~~h~~~-~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~--~~~h~~~~~~~l~~~~~vG~ld   76 (76)
T PF00173_consen    1 VYTWEELAKHNKK-GDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFE--EAFHSWWAEKCLEKYYKVGYLD   76 (76)
T ss_dssp             EEEHHHHTTTEET-TEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHH--HHTHHHHHHHHHHGCGEEEEE-
T ss_pred             CCCHHHHhhhCCC-CCEEEEECCEEcccccccccccchhHHHHHhccccccHHHh--hccCcHHHHHHccCCCEEEEeC
Confidence            4899999999965 699999999999999999999999 8888899999999982  23478889999998 9999874

The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....

>PRK13297 tRNA CCA-pyrophosphorylase; Provisional

Probab=99.57  E-value=1.2e-15  Score=169.91  Aligned_cols=90  Identities=20%  Similarity=0.293  Sum_probs=65.4

Q ss_pred             hhhcCcchhhhc-CCCCcEEEec-CCCHHHHHHHhhhcCCCceeeee--EEEEE-cCeeeccccceecccccccCCCCcc
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFP-HLGTDETFATLDFEGLFRSMPIP--FTLLF-SANFFRNLARITTLRIDVTTDGRHA  912 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~eitt~R~e~~~~~r~~  912 (939)
                      |+|||||||+|| ++++|+|+++ .+.|+++.+.    +   ..+.|  +.++. .+..    .|++++|+|.|+..++.
T Consensus        15 YlVGGaVRD~LLg~~~~D~D~vv~ga~pe~l~~~----~---~~~vG~~f~v~l~~~~~----~e~a~aRterk~g~g~~   83 (364)
T PRK13297         15 YIVGGAVRDALLGLPAGDRDWVVVGATPEDMARR----G---FIPVGGDFPVFLHPRTK----EEYALARTERKSGRGYK   83 (364)
T ss_pred             EEeCcHHHHHHcCCCCCCeeeeccCChHHHHHhc----C---ceeeCCEEEEEEeCCce----EEEEEEEEeeccCCCCc
Confidence            899999999999 8999999865 5778887663    1   12223  22332 2233    39999999988654443


Q ss_pred             cccc-C---CCHHHHhhcCCchhhhcCccC
Q psy11686        913 EVQF-T---EDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       913 ~v~~-~---~~l~~Dl~RRDFTINAma~~l  938 (939)
                      .+++ .   .+|++||.||||||||||+|.
T Consensus        84 ~f~~~~~~~~tLeeDL~RRDFTINAmA~~~  113 (364)
T PRK13297         84 GFTFYTGADVTLEQDLQRRDLTVNAIARTP  113 (364)
T ss_pred             eeEEeCCCCCCHHHHHHhccceeeeeEECC
Confidence            3333 2   389999999999999999974

>cd00321 SO_family_Moco Sulfite oxidase (SO) family, molybdopterin binding domain

Probab=99.56  E-value=2.5e-15  Score=151.07  Aligned_cols=102  Identities=27%  Similarity=0.436  Sum_probs=87.2

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCC-----
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSA-----  474 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~-----  474 (939)
                      |++++|+++|+++.+.+++|++|+              |+.+.+++++|+||+|++||++||+..++.+   .+.     
T Consensus        31 ~tl~eL~~lp~~~~~~~~~c~~n~--------------~~~~~~~~~~~~Gv~L~~lL~~ag~~~~~~~v~~~a~d~~~~   96 (156)
T cd00321          31 LTLDDLKALPQVEVIATLHCVGNR--------------WGGGAVSNAEWTGVPLRDLLEEAGPKPGARYVVFEGADDPGG   96 (156)
T ss_pred             EEHHHHhcCCCEEEEEEEEECCCC--------------CCCccEeccEEEEEEHHHHHHHcCCCCCCeEEEEEeeCCCCC
Confidence            667777788999999999999996              8889999999999999999999999987766   676     


Q ss_pred             CCceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceeeEEEEE
Q psy11686        475 DVQHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYHRVRVE  519 (939)
Q Consensus       475 d~~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~~~~i~  519 (939)
                      |.-..++++ +.+++.      +|||+||+.+||+|+|+|+|+.++...++
T Consensus        97 dgY~~~i~~-~~~~~~~~iLA~~~nG~pL~~~~GgPlrlv~P~~~g~k~vK  146 (156)
T cd00321          97 DGYTTSLPL-EKALDPDVLLAYEMNGEPLPPDHGFPLRLVVPGLYGWKSVK  146 (156)
T ss_pred             CCEEEEEEH-HHhhCCCCEEEeeeCCeECchhhCCceEEEcCCceeeEcce
Confidence            566678887 666654      99999999999999999999887655333

This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.

>KOG0536|consensus

Probab=99.55  E-value=3.6e-15  Score=139.84  Aligned_cols=76  Identities=25%  Similarity=0.505  Sum_probs=67.7

Q ss_pred             CCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCcccccCc
Q psy11686         21 PWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNISQ   99 (939)
Q Consensus        21 ~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~l~~   99 (939)
                      ..+|.+||++||+. +|||++|+|+|||||.|++.|||| +.|+.++|+|++.+|+  ..|..-+-.++|+.++||.+.+
T Consensus        68 i~vt~~El~KH~~~-dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fn--k~H~WVN~e~LL~~c~VGvl~d  144 (145)
T KOG0536|consen   68 IPVTAEELKKHNKK-DDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFN--KYHAWVNYEELLKKCFVGVLVD  144 (145)
T ss_pred             CccCHHHHHhhCCc-cceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHH--HHHHHhcHHHHHhhceeeeecc
Confidence            47999999999998 599999999999999999999999 9999999999999985  3455677778999999998754

>PRK13298 tRNA CCA-pyrophosphorylase; Provisional

Probab=99.55  E-value=3.2e-15  Score=170.03  Aligned_cols=92  Identities=15%  Similarity=0.228  Sum_probs=63.9

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCC-CHHHHHHH-hhhcCCCceeeeeEEEEEcCeeeccccceecccccccCCC-Cc--
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHL-GTDETFAT-LDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDG-RH--  911 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~eitt~R~e~~~~~-r~--  911 (939)
                      |+|||||||.|| ++++|+|+++.+ .|+++.+. +...|  +.+++   ++......    |++++|+|.++.. .+  
T Consensus         4 YlVGGaVRD~LLg~~~~D~D~vv~g~~~~~~~~~~~~~vG--~~f~v---~l~~~~~~----e~a~aRter~~g~g~~g~   74 (417)
T PRK13298          4 YLVGGAVRDSLLNLPVKDKDWVVVGGTPKILLSINFQQVG--KDFPV---FLHPETHE----EYALARTERKSGVGYTGF   74 (417)
T ss_pred             EEEccHHHHHHcCCCCCCeeEEecCCCHHHHHHHHHHHhC--CeeEE---EEeCceeE----EEEeecccccccCCCCCc
Confidence            899999999999 899999998765 57765442 22111  22222   22233333    9999999977432 22  


Q ss_pred             -cccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        912 -AEVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       912 -~~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                       ..+....+|++||.||||||||||+|.
T Consensus        75 ~~~~~~~~tleeDL~RRDFTINAmA~~~  102 (417)
T PRK13298         75 ITDTSSDVTLEEDLIRRDLTINAIAQDE  102 (417)
T ss_pred             ccccCCCCCHHHHHHhcccceeeeEECC
Confidence             223344599999999999999999985

>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes

Probab=99.52  E-value=7.3e-15  Score=144.76  Aligned_cols=100  Identities=26%  Similarity=0.256  Sum_probs=74.2

Q ss_pred             ccccccccee-ecCCCCCCccccCC-CCCcccccCCCcccccchhHHHHHHHHHHhhCeEEee--cccCeEE-------E
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKS-GPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRI--AGEGTVT-------A  611 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a-~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~--~~~g~~~-------~  611 (939)
                      -+++..||++ +++++.|+|+++.+ .++                .++++++.   .|...+.  ..||+++       +
T Consensus        20 ylVGG~VRD~Llg~~~~DiDi~v~~~~~~----------------~~~~l~~~---~~~~~v~~~~~f~t~~v~~~~~~~   80 (139)
T cd05398          20 YLVGGAVRDLLLGRPPKDIDIATDADGPE----------------FAEALFKK---IGGRVVGLGEEFGTATVVINGLTI   80 (139)
T ss_pred             EEECChHHHHHcCCCCCCceEEEeCCCHH----------------HHHHHHHh---cCCcEEecCCcccEEEEEECCEEE
Confidence            4677889987 69999999999887 444                44444432   3333333  4677654       4


Q ss_pred             EEEeeccCCCC---------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhc
Q psy11686        612 KVLSYRNRREK---------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKK  664 (939)
Q Consensus       612 ~v~tfr~~~~~---------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~  664 (939)
                      ++++||.+...         ..++++||.||||||||||+++   ..|+|+|||||++||++
T Consensus        81 di~~~R~e~~~~~~~~p~~~~~~~~~Dl~RRDFTINAmA~~~---~~~~liDp~~G~~DL~~  139 (139)
T cd05398          81 DVATLRTETYTDPGRRPPVVGFTIEEDLLRRDFTINAMAYDL---DDGELIDPFGGLKDLEN  139 (139)
T ss_pred             EEcccccccccCCCCCCcccCCCCHHHHhhcCcchhheEecC---CCCEEEeCCCCHHHHhC
Confidence            68899965432         2478899999999999999997   34899999999999985

CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io

>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed

Probab=99.52  E-value=7.3e-15  Score=168.96  Aligned_cols=93  Identities=17%  Similarity=0.241  Sum_probs=63.0

Q ss_pred             hhhcCcchhhhc-CCCCcEEEe-cCCCHHHHHHHhhhcCCCceeeeeEEEEEcCeeeccccceecccccccCCC-Cc-cc
Q psy11686        838 KILGGSFSKEMM-LKMLEINMF-PHLGTDETFATLDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDG-RH-AE  913 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eitt~R~e~~~~~-r~-~~  913 (939)
                      |+|||||||+|| ++++|+||+ +++.|+++.+. ....+.+.++   +++..+...    |++++|+|.++.. .+ ..
T Consensus         4 ylVGG~VRD~Llg~~~~D~D~vv~~~~~~~~~~~-~~~~~g~~f~---v~~~~~~~~----e~~~~r~er~~~~g~~~~~   75 (409)
T PRK10885          4 YLVGGAVRDALLGLPVKDRDWVVVGATPEEMLAQ-GYQQVGKDFP---VFLHPKTHE----EYALARTERKSGRGYTGFT   75 (409)
T ss_pred             EEeccHHHHHHcCCCCCCeeEEeeCChHHHHHhC-CCeecCceeE---EEEeCCceE----EEEeeeeccccCCCCCCce
Confidence            899999999999 899999986 45788876553 1111112222   122233334    9999999976432 22 11


Q ss_pred             c--ccCCCHHHHhhcCCchhhhcCccC
Q psy11686        914 V--QFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       914 v--~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      +  ....+|++||.||||||||||+|.
T Consensus        76 ~~~~~~~~l~eDl~RRDfTiNA~a~~~  102 (409)
T PRK10885         76 CYAAPDVTLEEDLIRRDLTINAMAQDD  102 (409)
T ss_pred             eccCCCCCHHHHHHhccchhhhheeCC
Confidence            1  222489999999999999999984

>COG2041 Sulfite oxidase and related enzymes [General function prediction only]

Probab=99.41  E-value=1.6e-13  Score=149.39  Aligned_cols=110  Identities=23%  Similarity=0.274  Sum_probs=91.0

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCC--c
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADV--Q  477 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~--~  477 (939)
                      |+++||+++|+.+...+++|++|.+...                  +.|+||+|+++|+.+|++..|.+   ++.|.  -
T Consensus       109 ~t~~dl~~~p~~~~~~~~~Cv~~Ws~~~------------------~~W~Gv~l~~lL~~~~p~~~A~~V~f~~~d~~~y  170 (271)
T COG2041         109 LTYEDLLALPLEERIYTFHCVEGWSMVD------------------APWTGVPLRELLDRAGPKDNAKYVMFHSLDGPDY  170 (271)
T ss_pred             ecHHHHhhCCcccEEEEEEEecCceEee------------------cceeeeeHHHHHHHhCcCCCCeEEEEEccCcccc
Confidence            4555666678889999999999975321                  18999999999999999999998   67776  5


Q ss_pred             eeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCceeec
Q psy11686        478 HVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDSSYNT  531 (939)
Q Consensus       478 ~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~~y~~  531 (939)
                      ...+++ +.||.+      +|||+|||++||+|+|+|||++||      ..+|.+.+++....|..
T Consensus       171 ~~~l~l-~~a~~p~~llA~~~~G~~Lp~~~G~PlRLvvp~~yg~k~~K~l~~I~l~~~~~~g~We~  235 (271)
T COG2041         171 TTGLPL-DDALHPLTLLAYGMNGEPLPPENGAPLRLVVPGKYGWKSAKWLVRIELTDKPPDGYWER  235 (271)
T ss_pred             ccCCCH-HHhcCcHhhHHHHhcCccCccccCCceEEEecchhcccCceEEEEEEEecCCCCCchhh
Confidence            567777 899998      799999999999999999998874      45888998888555554

>KOG2159|consensus

Probab=99.40  E-value=1.1e-13  Score=154.24  Aligned_cols=95  Identities=18%  Similarity=0.198  Sum_probs=71.6

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceee--------ee---------EEEEEcCeeecccccee
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMP--------IP---------FTLLFSANFFRNLARIT  899 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~eit  899 (939)
                      +|+||||||.|| ++|+|+|||+++.+.++.+.|..+.+ ++..        .|         .++...+..+    |++
T Consensus        32 RiaGGwVRD~LLg~~p~DiDiatta~~g~~~e~f~~~~~-~~~~~~~~~h~~~np~~skhletat~~i~~~~i----D~v  106 (416)
T KOG2159|consen   32 RLAGGWVRDLLLGREPKDIDIATTAMSGQMKEMFQSAQI-RVGKKFPICHVIMGPIKSKHLETATFRITTLRI----DFV  106 (416)
T ss_pred             EEecccHHHHHcCCCCcccceeeccccHHHHHHHHHHHH-hhcccCCcceeecCCcceeeecceeeeeecccc----cee
Confidence            999999999999 89999999999999998888876553 2100        11         2333333333    777


Q ss_pred             cccccccCCCCccccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        900 TLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       900 t~R~e~~~~~r~~~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      ++|.+.|++.+-+.+.++ +..+|+.||||||||++|++
T Consensus       107 ~lr~~~y~e~~~~~~~dg-t~~~nalRRD~TIN~Lffn~  144 (416)
T KOG2159|consen  107 NLRREAYTETSIPYVTDG-TRDENALRRDFTINSLFFNP  144 (416)
T ss_pred             ecCcccccccCCCCCCcC-cchhhhhhhccchhhhhccC
Confidence            777777766665566665 67899999999999999986

>PLN03198 delta6-acyl-lipid desaturase; Provisional

Probab=99.35  E-value=5.9e-13  Score=157.05  Aligned_cols=81  Identities=22%  Similarity=0.478  Sum_probs=70.6

Q ss_pred             CCCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCchHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccc
Q psy11686         16 PISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIG   95 (939)
Q Consensus        16 ~~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG   95 (939)
                      ..+..+.||++|+++|+++ ++|||+|+|+|||||+|++.||||+.|+.++|+|+|+.|.   ..|+..+.++|++|+||
T Consensus        99 ~~~~~~~~t~~ev~~H~~~-~d~Wivi~gkVYDvT~fl~~HPGG~~i~~~aG~DaT~~F~---~~H~~~~~~~l~~~~IG  174 (526)
T PLN03198         99 KEKKSKSHLLSEVAAHNKP-NDCWIVIKNKVYDVSDFAAEHPGGSVISTYFGRDGTDAFS---SFHAASTWKILQDFYIG  174 (526)
T ss_pred             hhhccCcCCHHHHHhhCCC-CCeEEEECCEEEecHHHHHhCCCchHHHHhcCCcHhHHHH---HhcCHHHHHHHhhCcce
Confidence            3445679999999999997 5999999999999999999999999888899998888874   34677788999999999


Q ss_pred             ccCcc
Q psy11686         96 NISQE  100 (939)
Q Consensus        96 ~l~~~  100 (939)
                      .+++.
T Consensus       175 ~l~~~  179 (526)
T PLN03198        175 DVDNV  179 (526)
T ss_pred             ecCCc
Confidence            99653

>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional

Probab=99.33  E-value=1.1e-12  Score=154.22  Aligned_cols=80  Identities=23%  Similarity=0.513  Sum_probs=70.3

Q ss_pred             CCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCchHHHHhhcCCchhhhhccCCCChHHHHHHhhcCcccc
Q psy11686         17 ISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGN   96 (939)
Q Consensus        17 ~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~   96 (939)
                      .++.+.||++||++|+++ ++|||+|+|+|||||+|+ .||||+.|+.++|+|+|+.|.   ..|+..+.++|++|+||+
T Consensus        20 ~~~~~~~s~~ev~~h~~~-~~~wi~i~g~vYDvt~f~-~HPGG~~i~~~aG~DaT~~F~---~~H~~~~~~~l~~~~iG~   94 (485)
T PLN03199         20 AEKPQKISWQEVKKHASP-DDAWIIHQNKVYDVSNWH-DHPGGAVIFTHAGDDMTDIFA---AFHAPGSQALMKKFYIGD   94 (485)
T ss_pred             CccCCccCHHHHHhhCCC-CCeEEEECCEEEcCCCcC-cCCCchHHHhhCCCChhHHHH---HhcCHHHHHHHHhccccc
Confidence            355688999999999997 599999999999999997 899998888999999998884   357888999999999999


Q ss_pred             cCccc
Q psy11686         97 ISQED  101 (939)
Q Consensus        97 l~~~~  101 (939)
                      +++++
T Consensus        95 l~~~~   99 (485)
T PLN03199         95 LIPES   99 (485)
T ss_pred             ccccc
Confidence            96554

>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]

Probab=99.32  E-value=1.5e-12  Score=128.42  Aligned_cols=79  Identities=23%  Similarity=0.489  Sum_probs=69.1

Q ss_pred             CCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccccc
Q psy11686         19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNI   97 (939)
Q Consensus        19 ~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~l   97 (939)
                      ....++.+|+.+||+++ +|||+|+|+|||||.|++.|||| +.|+..+|+|++..|  ...||+..+.++++.++||.+
T Consensus        48 ~~~~~~~eev~~h~~~~-d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f--~~~~~~~~~~~llk~~yv~~v  124 (164)
T COG5274          48 SPKPITAEEVAKHNKSE-DCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAF--NFLHHSHQIGNLLKDVYVDQV  124 (164)
T ss_pred             ccccccHHHHHHhcCcc-ceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhh--cccccchhHHhhhhceeeecc
Confidence            34679999999999985 79999999999999999999999 788889999666666  356788888999999999998


Q ss_pred             Ccc
Q psy11686         98 SQE  100 (939)
Q Consensus        98 ~~~  100 (939)
                      ...
T Consensus       125 ~r~  127 (164)
T COG5274         125 HRP  127 (164)
T ss_pred             cCc
Confidence            766

>KOG4232|consensus

Probab=98.85  E-value=1.3e-09  Score=121.51  Aligned_cols=81  Identities=26%  Similarity=0.493  Sum_probs=69.7

Q ss_pred             CCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCC--hHHHHHHhhcCccc
Q psy11686         19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHL--QDEVFELLESYRIG   95 (939)
Q Consensus        19 ~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~h--s~~a~~~l~~~~VG   95 (939)
                      .++++|++++.+|++. ++.|.+|+| |||+|+|++.|||| ..|..++|+|+|+.|   ..||  +..|.+.|+...+|
T Consensus         6 ~~~~~~we~~~~~~~~-~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF---~AfH~~~~~~~~~l~~l~~~   80 (430)
T KOG4232|consen    6 LPTTFSWEGKRKHDKA-EGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAF---EAFHPGTAFAYKHLKPLLIG   80 (430)
T ss_pred             CceeeeccchhhccCC-CceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHH---HHhCCChHHHHHHHHHHHcC
Confidence            3468999999999998 599999999 99999999999999 899999999887777   3455  45588899999999


Q ss_pred             ccCccchhh
Q psy11686         96 NISQEDSKL  104 (939)
Q Consensus        96 ~l~~~~~~~  104 (939)
                      ...++..++
T Consensus        81 ~~~pe~~~~   89 (430)
T KOG4232|consen   81 ELSPEIPSL   89 (430)
T ss_pred             CcCcccccc
Confidence            998777654

>PRK03381 PII uridylyl-transferase; Provisional

Probab=98.78  E-value=8e-09  Score=128.33  Aligned_cols=89  Identities=17%  Similarity=0.098  Sum_probs=72.7

Q ss_pred             hcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHH-HH
Q psy11686        663 KKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKE-MM  741 (939)
Q Consensus       663 ~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~-~~  741 (939)
                      .++.|-+..+  .+|.+||+||||++||++++||.   |+++|+++|+.++..|..++.||++.|+.|||.++.... .+
T Consensus       314 ~~~~l~~~~~--~~~~~DplRiLRa~rfaa~lgf~---I~~~T~~~i~~~~~~l~~~~~eri~~ef~kiL~~~~~~~~~l  388 (774)
T PRK03381        314 HAGEVVLARD--ARPARDPGLVLRVAAAAATTGLP---IAAATLSRLAASAPPLPTPWPAEARDDLLVLLGAGPAAVAVI  388 (774)
T ss_pred             ECCEEEeCCc--cccccCHHHHHHHHHHHHhcCCC---cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCchHHHH
Confidence            3455555444  38999999999999999999997   999999999999999999999999999999999876654 45


Q ss_pred             HHHHHhcCc--cccccc
Q psy11686        742 LKMLYQNLL--LFSKLK  756 (939)
Q Consensus       742 ~~l~~~~~l--lfp~l~  756 (939)
                      ..|.+.+.+  +||++.
T Consensus       389 ~~m~~~GvL~~~iPE~~  405 (774)
T PRK03381        389 EALDRTGLWGRLLPEWE  405 (774)
T ss_pred             HHHHHhCCHHHhchhHH
Confidence            555554444  689865

>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A

Probab=98.77  E-value=8.7e-09  Score=87.82  Aligned_cols=59  Identities=34%  Similarity=0.347  Sum_probs=49.7

Q ss_pred             CCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--cccccc
Q psy11686        695 CNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLK  756 (939)
Q Consensus       695 gf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~  756 (939)
                      ||+   |+++|..+|++++..|.++|+|||+.|+.|||.++++...+..|.+.+++  +||++.
T Consensus         1 gF~---ie~~t~~ai~~~~~~L~~is~ERi~~El~kil~~~~~~~~~~~l~~~gll~~ifP~l~   61 (64)
T PF12627_consen    1 GFK---IEPETEEAIKENAELLSKISKERIREELEKILSSPNPSRAFKLLDELGLLEYIFPELD   61 (64)
T ss_dssp             T-E---E-HHHHHHHHHHGGGGGGS-HHHHHHHHHHHHTSTTHHHHHHHHHHTTCHHHHSTTHH
T ss_pred             CCc---cCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHCcccc
Confidence            675   99999999999999999999999999999999999888777777666666  799875

...

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=98.73  E-value=1.3e-08  Score=128.24  Aligned_cols=90  Identities=13%  Similarity=0.080  Sum_probs=75.7

Q ss_pred             HhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCH--HHHHHHHHHHHcCCChHH
Q psy11686        662 LKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISG--ERIWTELNKILGGSFSKE  739 (939)
Q Consensus       662 L~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~--eRi~~El~kil~~~~~~~  739 (939)
                      +.++.|++.++  .+|.|||+||||++||++++||.   |+++|+.+|++++..|..++.  ||++.|+.+||.++..+.
T Consensus       319 ~~~~~l~~~~~--~~f~eDPlriLR~~rfaa~~~~~---i~~~T~~~i~~~~~~l~~~~~~~er~~~ef~~iL~~~~~~~  393 (850)
T TIGR01693       319 EDGGELVLART--AVFERDPALLLRLFAIAAQRGLP---IHPAALRQLTASLPLLPTPLREDPEARELFLELLTSGNGTV  393 (850)
T ss_pred             EECCEEEecCc--cchhhCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHcCCCchH
Confidence            56788998876  49999999999999999999997   999999999999999999988  999999999999875444


Q ss_pred             -HHHHHHHhcCc--cccccc
Q psy11686        740 -MMLKMLYQNLL--LFSKLK  756 (939)
Q Consensus       740 -~~~~l~~~~~l--lfp~l~  756 (939)
                       .+..|.+.+.+  +||++.
T Consensus       394 ~~l~~m~~~gvL~~~iPe~~  413 (850)
T TIGR01693       394 RALRAMNRAGVLGRFLPEWG  413 (850)
T ss_pred             HHHHHHHHhCCHHHhCchHh
Confidence             45545444444  688764

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=98.67  E-value=2.1e-08  Score=126.30  Aligned_cols=104  Identities=9%  Similarity=0.131  Sum_probs=86.1

Q ss_pred             eEEeCcCcHHHHhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCC--CHHHHHHHH
Q psy11686        651 TVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNI--SGERIWTEL  728 (939)
Q Consensus       651 ~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~v--s~eRi~~El  728 (939)
                      ..+||++|..||+++.|++++++  .|.+||+||||+|||+++ ++++..|+++|+.+|+.+...+..+  +.+|++.||
T Consensus       338 ~~~~~~~~~~~l~~~~i~~~~~~--~f~~dP~riLr~f~~~a~-~~~i~~i~~~t~~~i~~~~~~i~~~~~~~~~~~~~f  414 (895)
T PRK00275        338 GTIQPLNSRFQLRDGYIEATHPN--VFKRTPFALLEIFVLMAQ-HPEIKGVRADTIRLLREHRHLIDDAFRNDIRNTSLF  414 (895)
T ss_pred             ccccccCCCeEEECCEEEecChh--hhhcCHHHHHHHHHHHHh-CCCcCCCCHHHHHHHHHHHHhcCchhccCHHHHHHH
Confidence            37899999999999999999986  699999999999999999 4443347899999999999999887  667999999


Q ss_pred             HHHHcCCChHHH-HHHHHHhcCc--ccccccc
Q psy11686        729 NKILGGSFSKEM-MLKMLYQNLL--LFSKLKA  757 (939)
Q Consensus       729 ~kil~~~~~~~~-~~~l~~~~~l--lfp~l~~  757 (939)
                      .+||.++..... +..|.+.+++  ++|++..
T Consensus       415 ~~iL~~~~~~~~~l~~M~~~GvL~~~iPe~~~  446 (895)
T PRK00275        415 IELFKCPIGIHRNLRRMNRYGILGRYLPEFGH  446 (895)
T ss_pred             HHHHcCCCchHHHHHHHHHcCCHHHhCchHhh
Confidence            999999875544 5555554444  6887553

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=98.65  E-value=2.6e-08  Score=120.98  Aligned_cols=88  Identities=16%  Similarity=0.134  Sum_probs=71.9

Q ss_pred             HhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCCh-HHH
Q psy11686        662 LKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFS-KEM  740 (939)
Q Consensus       662 L~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~-~~~  740 (939)
                      +.++.|++++++.  | |||+||||++|||+++||.   |+++|+++|+++ ..+.....||+..|+.|+|.++.. ...
T Consensus       275 ~~~~~I~~~~~~~--~-eDPlRiLRafrfAa~~gf~---I~~~Tl~~i~~~-~~L~~~~~er~~~ef~kiL~s~~~~~~~  347 (693)
T PRK00227        275 DANGTIALSRTPD--L-DDPALPLRVAAAAARTGLP---VSESVWKRLEEC-PELPEPWPASAAGDFFRLLSSPVNSRRV  347 (693)
T ss_pred             EECCEEEeCCCCc--c-cCHHHHHHHHHHHHhcCCC---cCHHHHHHHHhh-hhcchhhHHHHHHHHHHHHcCCCChHHH
Confidence            5678999999973  4 9999999999999999997   999999999988 667777889999999999999744 445


Q ss_pred             HHHHHHhcCc--cccccc
Q psy11686        741 MLKMLYQNLL--LFSKLK  756 (939)
Q Consensus       741 ~~~l~~~~~l--lfp~l~  756 (939)
                      +..|.+.+.+  +||++.
T Consensus       348 L~~M~~~GvL~~llPE~~  365 (693)
T PRK00227        348 IKQMDRHGLWERIVPEWD  365 (693)
T ss_pred             HHHHHHcCCHHHHhHHHH
Confidence            5555554544  688764

>PRK03059 PII uridylyl-transferase; Provisional

Probab=98.65  E-value=4.5e-08  Score=122.84  Aligned_cols=92  Identities=15%  Similarity=0.152  Sum_probs=77.8

Q ss_pred             HHhcCcccccCCccccchhchhhHHHHHHHHHHh-C-CCCCCChHHHHHHHHHhhhhhcCC--CHHHHHHHHHHHHcCCC
Q psy11686        661 DLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARI-C-NNPNNHKEEVLSAIKNNLDGLHNI--SGERIWTELNKILGGSF  736 (939)
Q Consensus       661 DL~~~~iR~v~~~~~~f~EDPlRilRa~RFaarl-g-f~~~~i~~~t~~ai~~~~~~l~~v--s~eRi~~El~kil~~~~  736 (939)
                      .+++|.||+++++  .|.+||+||||+|||++++ + |.   |++.|+.+|+.+...+..+  +.||++.||.+||..+.
T Consensus       328 ~~~~~~i~~~~~~--~f~~dP~riLr~fr~aa~~~~~~~---i~~~T~~~i~~~~~~i~~~~~~~er~~~ef~~iL~~~~  402 (856)
T PRK03059        328 VEKQGMLEIASDD--LFERHPHAILEAFLLYQQTPGLKG---LSARTLRALYNARDVMNAAFRRDPVNRALFMQILQQPR  402 (856)
T ss_pred             EEECCEEEecCch--hhhcCHHHHHHHHHHHHhcCCccC---cCHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHcCCC
Confidence            4788999999886  6999999999999999999 6 55   9999999999999999888  67999999999999988


Q ss_pred             hH-HHHHHHHHhcCc--ccccccc
Q psy11686        737 SK-EMMLKMLYQNLL--LFSKLKA  757 (939)
Q Consensus       737 ~~-~~~~~l~~~~~l--lfp~l~~  757 (939)
                      .. ..+..|.+.+.+  +||++..
T Consensus       403 ~~~~~l~~m~~~GlL~~~lPe~~~  426 (856)
T PRK03059        403 GITHALRLMNQTSVLGRYLPNFRR  426 (856)
T ss_pred             chHHHHHHHHHhCCHHHhCchHhh
Confidence            64 455555555555  6887664

>PRK05092 PII uridylyl-transferase; Provisional

Probab=98.35  E-value=4e-07  Score=115.79  Aligned_cols=87  Identities=11%  Similarity=0.263  Sum_probs=70.0

Q ss_pred             HhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcC-----CCHHHHHHHHHHHHcCC-
Q psy11686        662 LKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHN-----ISGERIWTELNKILGGS-  735 (939)
Q Consensus       662 L~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~-----vs~eRi~~El~kil~~~-  735 (939)
                      +.++.|+++++.  +|.|||+||||++||++++||.   |+++|+.+|+++...+..     .+.+|++.|+   |..+ 
T Consensus       384 ~~~~~i~~~~~~--~f~edPlriLR~fr~aa~~~~~---i~~~T~~~i~~~~~~i~~~~~~~~~~~r~f~ei---l~~~~  455 (931)
T PRK05092        384 VDNGRINLADPD--VFERDPVNLIRLFHLADRHGLD---IHPDAMRLVTRSLRLIDAALREDPEANRLFLDI---LTSRR  455 (931)
T ss_pred             EECCEEEecChh--hhhhCHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcChhhccCHHHHHHHHHH---HcCCC
Confidence            577899999875  8999999999999999999997   999999999999987766     5778999886   4444 


Q ss_pred             ChHHHHHHHHHhcCc--cccccc
Q psy11686        736 FSKEMMLKMLYQNLL--LFSKLK  756 (939)
Q Consensus       736 ~~~~~~~~l~~~~~l--lfp~l~  756 (939)
                      .+...+..|.+.+.+  ++|++.
T Consensus       456 ~~~~~l~~m~~~GvL~~~iPef~  478 (931)
T PRK05092        456 NPERVLRRMNEAGVLGRFIPDFG  478 (931)
T ss_pred             chHHHHHHHHHhCChHHhcccHH
Confidence            445556656555555  688764

>COG4892 Predicted heme/steroid binding protein [General function prediction only]

Probab=98.19  E-value=2.5e-06  Score=71.85  Aligned_cols=77  Identities=17%  Similarity=0.303  Sum_probs=61.5

Q ss_pred             CCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCchHHHHhhcCCchhhhhccCCCChHHHHHHhhcC-cccccC
Q psy11686         20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQDEVFELLESY-RIGNIS   98 (939)
Q Consensus        20 ~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~-~VG~l~   98 (939)
                      ++.||++|+.++|...+..+|.++|.||||+.-...--|-..-++-+|+|.++-|+..+.|    -.++|+.| +||.|.
T Consensus         1 mrefTLEELs~ynG~nGpaYiA~~G~VYDvS~s~~W~dGtHqglhsaG~DLs~~~~~~aph----g~eil~~~PvVG~L~   76 (81)
T COG4892           1 MREFTLEELSKYNGENGPAYIAVNGTVYDVSLSPSWGDGTHQGLHSAGKDLSSEFNSCAPH----GMEILTSLPVVGALI   76 (81)
T ss_pred             CceecHHHHHhhcCCCCCeEEEECCEEEeeccCcccCCCccccccccchhHHHHHhhcCCc----hhHHHhcCchhheee
Confidence            4789999999999877899999999999999866554444777888999999888754444    35677888 888886


Q ss_pred             cc
Q psy11686         99 QE  100 (939)
Q Consensus        99 ~~  100 (939)
                      .+
T Consensus        77 k~   78 (81)
T COG4892          77 KE   78 (81)
T ss_pred             cc
Confidence            54

>PHA01806 hypothetical protein

Probab=98.08  E-value=1.1e-06  Score=89.07  Aligned_cols=27  Identities=11%  Similarity=0.020  Sum_probs=22.5

Q ss_pred             ccccccccee-ecCCCCCCcccc-CCCCC
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRF-KSGPD  569 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t-~a~~~  569 (939)
                      -++...||++ ++++++|+||++ ++.|+
T Consensus        39 YlVGG~VRD~Llgr~~kDiDivt~~~~pe   67 (200)
T PHA01806         39 ALAGGAARDLMHGAEPKDIDIALYGMDDR   67 (200)
T ss_pred             EEECchHHHHHcCCCCCceEEEccCCCHH
Confidence            4667789997 699999999998 57777

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=98.01  E-value=6e-06  Score=104.02  Aligned_cols=89  Identities=11%  Similarity=0.190  Sum_probs=69.8

Q ss_pred             HhcCcccccCCccccchhchhhHHHHHHHHHHh-CCCCCCChHHHHHHHHHh----hhhhcCCCHHHHHHHHHHHHcCCC
Q psy11686        662 LKKGVCAFVGDPVSRIQEDYLRILRYFRFFARI-CNNPNNHKEEVLSAIKNN----LDGLHNISGERIWTELNKILGGSF  736 (939)
Q Consensus       662 L~~~~iR~v~~~~~~f~EDPlRilRa~RFaarl-gf~~~~i~~~t~~ai~~~----~~~l~~vs~eRi~~El~kil~~~~  736 (939)
                      +.++.|.+..+  ..|.+||+||||+|||++++ ||.   |+++|+.+|+.+    ...+..+|.||  .|+.|||.++.
T Consensus       326 ~~~~~i~~~~~--~~f~~dp~riLr~fr~~a~~~~~~---i~~~t~~~i~~~~~~~~~~l~~~~~eR--~ef~kiL~~~~  398 (854)
T PRK01759        326 LINNAICLRNP--DCFEQQPESILDLFFYLTQYPQAE---IHSTTLRQLRLALEQLQQPLCELPAAR--ERFLRLFNQPN  398 (854)
T ss_pred             EECCEEEecCh--hhhhhCHHHHHHHHHHHHHCCCCC---cCHHHHHHHHHHHHhccchhccCHHHH--HHHHHHHcCCC
Confidence            56677777655  48999999999999999999 697   999999977765    34677899998  89999999987


Q ss_pred             hH-HHHHHHHHhcCc--ccccccc
Q psy11686        737 SK-EMMLKMLYQNLL--LFSKLKA  757 (939)
Q Consensus       737 ~~-~~~~~l~~~~~l--lfp~l~~  757 (939)
                      .. ..+..|.+.+.+  ++|++..
T Consensus       399 ~~~~~l~~M~~~GvL~~~iPe~~~  422 (854)
T PRK01759        399 AIKRALVPMHQYGVLTAYLPQWKG  422 (854)
T ss_pred             chHHHHHHHHHhCCHHHhChHHHh
Confidence            65 445555555544  6887653

>PRK05007 PII uridylyl-transferase; Provisional

Probab=97.95  E-value=1.1e-05  Score=102.09  Aligned_cols=93  Identities=17%  Similarity=0.166  Sum_probs=72.8

Q ss_pred             HhcCcccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCC--CHHHHHHHHHHHHcCCChHH
Q psy11686        662 LKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNI--SGERIWTELNKILGGSFSKE  739 (939)
Q Consensus       662 L~~~~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~v--s~eRi~~El~kil~~~~~~~  739 (939)
                      +.+++|++++++  .|.+||+||||+|||+++. +.+..|+++|+.+|+.+...+..-  ..++++.||.|||.++.+..
T Consensus       350 ~~~~~i~~~~~~--~f~~dp~~iLr~f~~aa~~-~~i~~i~~~t~~~i~~~~~~i~~~~~~~~~~~~~f~~iL~~~~~~~  426 (884)
T PRK05007        350 LRGTLIDLRDET--LFQRQPEAILRMFYLMARN-SNITGIYSTTLRQLRHARRHLNQPLCEIPEARKLFMEILRHPGAVS  426 (884)
T ss_pred             EECCEEeecChh--hhhhCHHHHHHHHHHHHhC-CCcCCCCHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHcCCCchH
Confidence            577889999987  6999999999999999994 443347799999999998877631  23569999999999987765


Q ss_pred             -HHHHHHHhcCc--ccccccc
Q psy11686        740 -MMLKMLYQNLL--LFSKLKA  757 (939)
Q Consensus       740 -~~~~l~~~~~l--lfp~l~~  757 (939)
                       .+..|.+.+.+  ++|++..
T Consensus       427 ~~l~~m~~~GlL~~~iPe~~~  447 (884)
T PRK05007        427 RALLPMHRHSVLSAYMPQWSH  447 (884)
T ss_pred             HHHHHHHHhCCHHHhCchHhh
Confidence             56666555555  6887653

>PRK04374 PII uridylyl-transferase; Provisional

Probab=96.90  E-value=0.0026  Score=80.55  Aligned_cols=80  Identities=16%  Similarity=0.180  Sum_probs=65.5

Q ss_pred             ccchhchhhHHHHHHHHHHhC--CCCCCChHHHHHHHHHhhhhhcCC--CHHHHHHHHHHHHcCCChHHHHHHHHHhcCc
Q psy11686        675 SRIQEDYLRILRYFRFFARIC--NNPNNHKEEVLSAIKNNLDGLHNI--SGERIWTELNKILGGSFSKEMMLKMLYQNLL  750 (939)
Q Consensus       675 ~~f~EDPlRilRa~RFaarlg--f~~~~i~~~t~~ai~~~~~~l~~v--s~eRi~~El~kil~~~~~~~~~~~l~~~~~l  750 (939)
                      ..|.+||.+|||.|.++++.+  ..   |++.|+.+|+.+...+..-  ...|++.||.|||.++++...+..|.+.+++
T Consensus       350 ~~f~~~P~~il~lf~~~~~~~~~~~---i~~~t~r~l~~~~~~l~~~~~~~~ri~~ef~kiL~~~~~~~~l~~m~~~GvL  426 (869)
T PRK04374        350 SWPDGDVLQVFALFAQWAAHREVRG---LHSLTARALAEVLRDLPAYDVADATARERFMALLRGPRAVETLNRMARLGVL  426 (869)
T ss_pred             ccchhCHHHHHHHHHHHHhCCCcCC---CCHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHcCCChhHHHHHHHHhCCH
Confidence            479999999999999999998  54   8999999999988766542  5679999999999998777666666666655


Q ss_pred             --ccccccc
Q psy11686        751 --LFSKLKA  757 (939)
Q Consensus       751 --lfp~l~~  757 (939)
                        ++|++..
T Consensus       427 ~~~lPE~~~  435 (869)
T PRK04374        427 GQWIPAFAS  435 (869)
T ss_pred             HHHhhhHHH
Confidence              6887653

>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.00  E-value=0.014  Score=56.16  Aligned_cols=73  Identities=16%  Similarity=0.303  Sum_probs=54.4

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEE
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVE  482 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~  482 (939)
                      |++.+|.++|..+++..+                   +|.+   ||++|+||+|+++|+..|.+...           ++
T Consensus        38 ft~qeLeal~~~T~ete~-------------------Pw~~---gn~rf~Gvsls~Ll~~l~ak~ts-----------lt   84 (155)
T COG3915          38 FTLQELEALPDETIETET-------------------PWTQ---GNTRFKGVSLSALLAWLGAKQTS-----------LT   84 (155)
T ss_pred             ecHHHHhcCCcceEEEec-------------------Cccc---CceeecceeHHHHHHHhhccCcc-----------eE
Confidence            777778887777665544                   4554   57899999999999999965433           43


Q ss_pred             eeeeeccc-------------------CCCCCCCCCCCCCCcceeec
Q psy11686        483 IWSKAVDS-------------------SYNTQPESFANIWNLRGVLS  510 (939)
Q Consensus       483 ~~~~a~d~-------------------~~Ng~pl~~~~g~p~R~vvp  510 (939)
                      .  .|+++                   .+||.+..-.|-.|+=.+-|
T Consensus        85 ~--iALNdY~a~Ip~sDi~kynpIlA~~~nGn~M~IRerGPl~~IYp  129 (155)
T COG3915          85 V--IALNDYWAEIPYSDIEKYNPILAIQNNGNYMQIRERGPLWSIYP  129 (155)
T ss_pred             E--EEecceeccCcHHHhhhcccEEEEEeCCcEEEEeccCceEEEee
Confidence            3  45554                   68898888888888888777

>KOG1110|consensus

Probab=95.49  E-value=0.023  Score=57.62  Aligned_cols=55  Identities=18%  Similarity=0.320  Sum_probs=39.9

Q ss_pred             CCCCCCcCHHHHhhccCC--CCCeEEEEcCeEeecccchh-cCCCchHHHHhhcCCchh
Q psy11686         17 ISTLPWYSLSDIQNHKDL--KSSIWVVFRQGVYDITEFVQ-MHPGGEIIMKAAGGSIEP   72 (939)
Q Consensus        17 ~~~~~~~t~~ev~~h~~~--~~~~wvii~g~VYDvT~f~~-~HPGG~~il~~aG~d~~~   72 (939)
                      .+.++.||.+|+++++..  +...++.|+|+|||||.=.. +-|||-. -.+||+|++.
T Consensus        52 ~P~~~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY-~~fAG~DASR  109 (183)
T KOG1110|consen   52 LPKVRDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPY-SLFAGKDASR  109 (183)
T ss_pred             CCcccccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCc-hhhcccchHH
Confidence            344568999999999843  35899999999999997554 6788722 2356765543

>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.31  E-value=0.045  Score=52.77  Aligned_cols=73  Identities=8%  Similarity=-0.128  Sum_probs=58.5

Q ss_pred             ceeeeHHHHHHhccc-----ee-ccccCccCccccHHHHHhCCCCCC-----------CCCcchhhhcC--C---CCCCC
Q psy11686        170 LSSFKHSDEKLKLVK-----VM-AGNISQEDSKLAAKDIASDPYVME-----------PVRSPLLKATS--L---KPYNA  227 (939)
Q Consensus       170 p~~~t~~dl~~~~p~-----~C-~gn~~~~~~~~~~~~vL~~~g~~d-----------~~~ipl~~a~~--~---~~mNG  227 (939)
                      +.+||++||. .+|.     +- +.-++..|.|++++++|+..|++.           ...||+++.-.  +   |.|||
T Consensus        35 ~~~ft~qeLe-al~~~T~ete~Pw~~gn~rf~Gvsls~Ll~~l~ak~tslt~iALNdY~a~Ip~sDi~kynpIlA~~~nG  113 (155)
T COG3915          35 TVSFTLQELE-ALPDETIETETPWTQGNTRFKGVSLSALLAWLGAKQTSLTVIALNDYWAEIPYSDIEKYNPILAIQNNG  113 (155)
T ss_pred             ceeecHHHHh-cCCcceEEEecCcccCceeecceeHHHHHHHhhccCcceEEEEecceeccCcHHHhhhcccEEEEEeCC
Confidence            5679999998 7888     33 336778899999999999999652           23499998643  3   99999


Q ss_pred             CCCCCC-CCCceEeeCC
Q psy11686        228 EPPPSM-LYSSLLRIPF  243 (939)
Q Consensus       228 epLp~~-G~PlRlvvPg  243 (939)
                      .+...- -+|+-+|-|-
T Consensus       114 n~M~IRerGPl~~IYpl  130 (155)
T COG3915         114 NYMQIRERGPLWSIYPL  130 (155)
T ss_pred             cEEEEeccCceEEEeec
Confidence            999999 9999877775

>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes

Probab=94.06  E-value=0.036  Score=31.57  Aligned_cols=11  Identities=36%  Similarity=0.860  Sum_probs=8.7

Q ss_pred             EEeCCCCCeEE
Q psy11686        330 VTIDQGRTWHV  340 (939)
Q Consensus       330 vS~DgG~tW~~  340 (939)
                      .|.|+|+||+.
T Consensus         2 ~S~D~G~TW~~   12 (12)
T PF02012_consen    2 YSTDGGKTWKK   12 (12)
T ss_dssp             EESSTTSS-EE
T ss_pred             EeCCCcccCcC
Confidence            69999999974

The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....

>PF14901 Jiv90: Cleavage inducing molecular chaperone

Probab=84.74  E-value=0.63  Score=42.71  Aligned_cols=25  Identities=36%  Similarity=0.702  Sum_probs=18.7

Q ss_pred             hccCCCCCeEE-------------EEcCeEeecccchh
Q psy11686         30 NHKDLKSSIWV-------------VFRQGVYDITEFVQ   54 (939)
Q Consensus        30 ~h~~~~~~~wv-------------ii~g~VYDvT~f~~   54 (939)
                      .|..+++|.|+             +.+|+|||||+|+.
T Consensus        36 ~H~Ak~gDiWaE~~~~G~~~~yy~c~~g~VyDiTeWA~   73 (94)
T PF14901_consen   36 RHPAKEGDIWAESSSLGFLWTYYACMDGKVYDITEWAT   73 (94)
T ss_pred             hcccccCCeEEEecccceEEEEEEEcCceEEehhhhhh
Confidence            34444567776             67999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	939
3hbp_A	466	Structure Of Recombinant Chicken Liver Sulfite Oxid		2e-34
3hbp_A	466	Structure Of Recombinant Chicken Liver Sulfite Oxid		3e-10
1sox_A	466	Sulfite Oxidase From Chicken Liver Length = 466		2e-34
1sox_A	466	Sulfite Oxidase From Chicken Liver Length = 466		3e-10
2a9d_A	372	Crystal Structure Of Recombinant Chicken Sulfite Ox		2e-34
2a9d_A	372	Crystal Structure Of Recombinant Chicken Sulfite Ox		3e-10
3hbq_A	466	Structure Of Recombinant Chicken Liver Sulfite Oxid		2e-34
3hbq_A	466	Structure Of Recombinant Chicken Liver Sulfite Oxid		4e-10
2a99_A	372	Crystal Structure Of Recombinant Chicken Sulfite Ox		2e-34
2a99_A	372	Crystal Structure Of Recombinant Chicken Sulfite Ox		3e-10
2a9b_A	372	Crystal Structure Of R138q Mutant Of Recombinant Su		2e-34
2a9b_A	372	Crystal Structure Of R138q Mutant Of Recombinant Su		3e-10
3hc2_A	466	Crystal Structure Of Chicken Sulfite Oxidase Mutant		6e-34
3hc2_A	466	Crystal Structure Of Chicken Sulfite Oxidase Mutant		3e-10
3r19_A	466	Chicken Sulfite Oxidase Triple Mutant With Altered		2e-33
3r19_A	466	Chicken Sulfite Oxidase Triple Mutant With Altered		6e-09
3r18_A	466	Chicken Sulfite Oxidase Double Mutant With Altered		3e-33
3r18_A	466	Chicken Sulfite Oxidase Double Mutant With Altered		2e-09
1ou5_A	448	Crystal Structure Of Human Cca-Adding Enzyme Length		2e-31
1ou5_A	448	Crystal Structure Of Human Cca-Adding Enzyme Length		6e-14
1ogp_A	393	The Crystal Structure Of Plant Sulfite Oxidase Prov		1e-16
1ogp_A	393	The Crystal Structure Of Plant Sulfite Oxidase Prov		1e-05
1mj4_A	82	Crystal Structure Analysis Of The Cytochrome B5 Dom		3e-15
1jex_A	94	Solution Structure Of A67v Mutant Of Rat Ferro Cyto		2e-09
1bfx_A	99	The Solution Nmr Structure Of The B Form Of Oxidize		4e-09
1i87_A	98	Solution Structure Of The Water-Soluble Fragment Of		4e-09
1aqa_A	94	Solution Structure Of Reduced Microsomal Rat Cytoch		5e-09
1blv_A	94	Solution Structure Of Oxidized Rat Microsomal Cytoc		5e-09
1ib7_A	94	Solution Structure Of F35y Mutant Of Rat Ferro Cyto		1e-08
2bih_A	474	Crystal Structure Of The Molybdenum-containing Nitr		8e-08
1f03_A	82	Solution Structure Of Oxidized Bovine Microsomal Cy		5e-07
1m2m_A	82	Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cyt		5e-07
1u9m_A	82	Crystal Structure Of F58w Mutant Of Cytochrome B5 L		7e-07
1i5u_A	82	Solution Structure Of Cytochrome B5 Triple Mutant (		1e-06
2bii_A	424	Crystal Structure Of Nitrate-Reducing Fragment Of A		1e-06
1hko_A	104	Nmr Structure Of Bovine Cytochrome B5 Length = 104		2e-06
1es1_A	82	Crystal Structure Of Val61his Mutant Of Trypsin-Sol		2e-06
1cyo_A	93	Bovine Cytochrome B(5) Length = 93		2e-06
1j0q_A	82	Solution Structure Of Oxidized Bovine Microsomal Cy		2e-06
2m33_A	104	Solution Nmr Structure Of Full-length Oxidized Micr		3e-06
2i96_A	108	Solution Structure Of The Oxidized Microsomal Human		4e-06
3aqm_A	415	Structure Of Bacterial Protein (Form Ii) Length = 4		4e-06
1miy_A	404	Crystal Structure Of Bacillus Stearothermophilus Cc		4e-06
1ehb_A	82	Crystal Structure Of Recombinant Trypsin-Solubilize		4e-06
1do9_A	94	Solution Structure Of Oxidized Microsomal Rabbit Cy		4e-06
1m2i_A	82	Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME		4e-06
3ozz_B	82	Structure Of A Cytochrome B5 Core-Swap Mutant Lengt		5e-06
1u9u_A	82	Crystal Structure Of F58y Mutant Of Cytochrome B5 L		7e-06
1m20_A	82	Crystal Structure Of F35y Mutant Of Trypsin-Solubil		1e-05
3aqk_A	414	Structure Of Bacterial Protein (Apo Form I) Length		1e-05
3aql_A	415	Structure Of Bacterial Protein (Apo Form Ii) Length		1e-05
1lr6_A	82	Crystal Structure Of V45y Mutant Of Cytochrome B5 L		1e-05
1lqx_A	82	Crystal Structure Of V45e Mutant Of Cytochrome B5 L		2e-05
1sh4_A	82	Solution Structure Of Oxidized Bovine Microsomal Cy		2e-05
3ner_A	92	Structure Of Human Type B Cytochrome B5 Length = 92		4e-05
1m59_A	82	Crystal Structure Of P40v Mutant Of Trypsin-Solubil		5e-05
1miv_A	404	Crystal Structure Of Bacillus Stearothermophilus Cc		1e-04
2xts_A	390	Crystal Structure Of The Sulfane Dehydrogenase Soxc		2e-04
2i89_A	93	Structure Of Septuple Mutant Of Rat Outer Mitochond		2e-04
1icc_A	87	Rat Outer Mitochondrial Membrane Cytochrome B5 Leng		4e-04
1awp_A	92	Rat Outer Mitochondrial Membrane Cytochrome B5 Leng		8e-04
1eue_A	86	Rat Outer Mitochondrial Membrane Cytochrome B5 Leng		9e-04

>pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant Sulfite Oxidase With Bound Substrate, Sulfite, At The Active Site Length = 466

Iteration: 1
 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES SHWQQNDYKGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 305 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
            ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G   +AP  R W W LW  T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             T E+ I+          +D + N  PD +  ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447

>pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant Sulfite Oxidase With Bound Substrate, Sulfite, At The Active Site Length = 466

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
           VKG  W   G   V       G  TW  ARL+      G +   +L    V       +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
           I  KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464

>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver Length = 466

Iteration: 1
 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES SHWQQNDYKGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 305 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
            ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G   +AP  R W W LW  T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             T E+ I+          +D + N  PD +  ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447

>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver Length = 466

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
           VKG  W   G   V       G  TW  ARL+      G +   +L    V       +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
           I  KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464

>pdb|2A9D|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase With Arg At Residue 161 Length = 372

Iteration: 1
 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES SHWQQNDYKGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 211 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 268
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
            ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G   +AP  R W W LW  T+PV+
Sbjct: 269 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 326
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             T E+ I+          +D + N  PD +  ++
Sbjct: 327 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 353

>pdb|2A9D|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase With Arg At Residue 161 Length = 372

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
           VKG  W   G   V       G  TW  ARL+      G +   +L    V       +E
Sbjct: 273 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 332
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
           I  KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 333 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 370

>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase Mutant Cys 185 Ala Length = 466

Iteration: 1
 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES SHWQQNDYKGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 305 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
            ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G   +AP  R W W LW  T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             T E+ I+          +D + N  PD +  ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447

>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase Mutant Cys 185 Ala Length = 466

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
           VKG  W   G   V       G  TW  ARL+      G +   +L    V       +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
           I  KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464

>pdb|2A99|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase At Resting State Length = 372

Iteration: 1
 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES SHWQQNDYKGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 211 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 268
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
            ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G   +AP  R W W LW  T+PV+
Sbjct: 269 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 326
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             T E+ I+          +D + N  PD +  ++
Sbjct: 327 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 353

>pdb|2A99|A Chain A, Crystal Structure Of Recombinant Chicken Sulfite Oxidase At Resting State Length = 372

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
           VKG  W   G   V       G  TW  ARL+      G +   +L    V       +E
Sbjct: 273 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 332
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
           I  KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 333 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 370

>pdb|2A9B|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Sulfite Oxidase At Resting State Length = 372

Iteration: 1
 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES SHWQQNDYKGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 211 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 268
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
            ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G   +AP  R W W LW  T+PV+
Sbjct: 269 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 326
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             T E+ I+          +D + N  PD +  ++
Sbjct: 327 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 353

>pdb|2A9B|A Chain A, Crystal Structure Of R138q Mutant Of Recombinant Sulfite Oxidase At Resting State Length = 372

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 447 GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVEIWSKAVDSSYNTQPESFANIW 503
           G  TW  ARL+      G +   +L    V       +EI  KAVDSSYN QP+S A IW
Sbjct: 294 GGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIW 353
Query: 504 NLRGVLSNAYHRVRVEI 520
           NLRGVLS A+HRVRV +
Sbjct: 354 NLRGVLSTAWHRVRVSV 370

>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr 322 Phe Length = 466

Iteration: 1
 Score =  142 bits (359), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 97/155 (62%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES SHWQQND+KGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 305 RVAVSPDESPSHWQQNDFKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
            ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G   +AP  R W W LW  T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             T E+ I+          +D + N  PD +  ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447

>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr 322 Phe Length = 466

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
           VKG  W   G   V       G  TW  ARL+      G +   +L    V       +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
           I  KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464

>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered Activity And Substrate Affinity Length = 466

Iteration: 1
 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 96/155 (61%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES SHWQQND KGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 305 RVAVSPDESPSHWQQNDNKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
            ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G   +AP  R W W LW  T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             T E+ I+          +D + N  PD +  ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447

>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered Activity And Substrate Affinity Length = 466

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
           VKG  W   G   V       G  TW  ARL+      G +   +L    V       +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
           I  KAVDSSYN QP+S A IWNL G+LS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLMGMLSTAWHRVRVSV 464

>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered Activity And Substrate Affinity Length = 466

Iteration: 1
 Score =  140 bits (354), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 96/155 (61%), Gaps = 12/155 (7%)
Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES SHWQQND KGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 305 RVAVSPDESPSHWQQNDNKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVP--P 362
Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
            ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G   +AP  R W W LW  T+PV+
Sbjct: 363 GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGD--KAPPGRAWAWALWELTVPVE 420
Query: 369 PKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
             T E+ I+          +D + N  PD +  ++
Sbjct: 421 AGT-ELEIVCKA-------VDSSYNVQPDSVAPIW 447

>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered Activity And Substrate Affinity Length = 466

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 436 VKGLTW---GHAAV-------GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVE 482
           VKG  W   G   V       G  TW  ARL+      G +   +L    V       +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426
Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
           I  KAVDSSYN QP+S A IWNL GVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLMGVLSTAWHRVRVSV 464

>pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme Length = 448

Iteration: 1
 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 105/224 (46%), Gaps = 58/224 (25%)
Query: 569 DGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTV------------------- 609
           D KMKL SPEF S FT  LK L  +F K  ++LRIAG G V                   
Sbjct: 41  DDKMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAG-GAVRDLLNGVKPQDIDFATTAT 99
Query: 610 ---------TAKVLSYRNRREKEDRIG-----ENQPFRKLTLSV---------------- 639
                    +A +    NR EK   I      EN     L + V                
Sbjct: 100 PTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQ 159
Query: 640 QDKDRS--------FRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFF 691
           +D +R            DGT++DYFNG+EDLK     FVG    RIQEDYLRILRYFRF+
Sbjct: 160 KDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFY 219
Query: 692 ARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGS 735
            RI + P +H  E L AI  N  GL  ISGERIW EL KIL G+
Sbjct: 220 GRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGN 263

>pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme Length = 448

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 37/41 (90%)
Query: 898 ITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGM 938
           ITTLRIDVTTDGRHAEV+FT DW+ DA RRDLT+NSMFLG 
Sbjct: 136 ITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGF 176

>pdb|1OGP|A Chain A, The Crystal Structure Of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation In Plants And Animals Length = 393

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 255 HESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQ 314
            ES   + Q DYK F PS +WD ++++      + PV SAIC  V D ++ ++  ++ ++
Sbjct: 230 EESQGFFMQKDYKMFPPSVNWDNINWSSRRPQMDFPVQSAIC-SVEDVQM-VKPGKVSIK 287
Query: 315 GYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRH-----WGWTLWRATIPVDP 369
           GYA SGGG+ I RVD+++D G+ W  A+ T +  +  ++ H     W W L+ ATI V  
Sbjct: 288 GYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEATIDVSQ 347
Query: 370 KTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMF 403
            T+ ++            +D A N  P+ +++++
Sbjct: 348 TTEVIA----------KAVDSAANVQPENVESVW 371

>pdb|1OGP|A Chain A, The Crystal Structure Of Plant Sulfite Oxidase Provides Insight Into Sulfite Oxidation In Plants And Animals Length = 393

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 29/35 (82%)
Query: 482 EIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRV 516
           E+ +KAVDS+ N QPE+  ++WNLRGVL+ ++HRV
Sbjct: 350 EVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRV 384

>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain Of Human Sulfite Oxidase Length = 82

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHL 81
          Y+  ++ +H   ++ IWV     V+D+TEFV +HPGG   +M AAGG +EPFWA+Y VH 
Sbjct: 7  YTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHN 66
Query: 82 QDEVFELLESYRIGNI 97
          Q  V ELL  Y+IG +
Sbjct: 67 QSHVRELLAQYKIGEL 82

>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro Cytochrome B5 Length = 94

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
           + +Y+L +IQ HKD KS+ WV+    VYD+T+F++ HPGGE +++  A G + E F    
Sbjct: 4   VKYYTLEEIQKHKDSKST-WVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 59
Query: 78  GVHLQDEVFELLESYRIGNISQEDSKLAAK 107
            V    +V EL ++Y IG +  +D    AK
Sbjct: 60  DVGHSTDVRELSKTYIIGELHPDDRSKIAK 89

>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat Microsomal Cytochrome B5, Minimized Average Structure Length = 99

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
           + +Y+L +IQ HKD KS+ WV+    VYD+T+F++ HPGGE +++  A G + E F    
Sbjct: 9   VKYYTLEEIQKHKDSKST-WVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 64
Query: 78  GVHLQDEVFELLESYRIGNISQEDSKLAAK 107
            V    +  EL ++Y IG +  +D    AK
Sbjct: 65  DVGHSTDARELSKTYIIGELHPDDRSKIAK 94

>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat Hepatic Apocytochrome B5 Length = 98

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
           + +Y+L +IQ HKD KS+ WV+    VYD+T+F++ HPGGE +++  A G + E F    
Sbjct: 8   VKYYTLEEIQKHKDSKST-WVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 63
Query: 78  GVHLQDEVFELLESYRIGNISQEDSKLAAK 107
            V    +  EL ++Y IG +  +D    AK
Sbjct: 64  DVGHSTDARELSKTYIIGELHPDDRSKIAK 93

>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome B5, Nmr, Minimized Average Structure Length = 94

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
           + +Y+L +IQ HKD KS+ WV+    VYD+T+F++ HPGGE +++  A G + E F    
Sbjct: 4   VKYYTLEEIQKHKDSKST-WVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 59
Query: 78  GVHLQDEVFELLESYRIGNISQEDSKLAAK 107
            V    +  EL ++Y IG +  +D    AK
Sbjct: 60  DVGHSTDARELSKTYIIGELHPDDRSKIAK 89

>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome B5 In The Presence Of 2 M Guanidinium Chloride: Monitoring The Early Steps In Protein Unfolding Length = 94

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
           + +Y+L +IQ HKD KS+ WV+    VYD+T+F++ HPGGE +++  A G + E F    
Sbjct: 4   VKYYTLEEIQKHKDSKST-WVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 59
Query: 78  GVHLQDEVFELLESYRIGNISQEDSKLAAK 107
            V    +  EL ++Y IG +  +D    AK
Sbjct: 60  DVGHSTDARELSKTYIIGELHPDDRSKIAK 89

>pdb|2BIH|A Chain A, Crystal Structure Of The Molybdenum-containing Nitrate Reducing Fragment Of Pichia Angusta Assimilatory Nitrate Reductase Length = 474

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 143/359 (39%), Gaps = 100/359 (27%)
Query: 120 RSP-LLKATSLKPYNAEPPPSMLVEN-FLTPSLLSQV---GSSTITLDQAIVSKQLS--S 172
           R P LL+ T   P+N+EPP + L ++ FLTP  L  V   G      D+ I+  ++S   
Sbjct: 42  RDPDLLRLTGSHPFNSEPPLTKLYDSGFLTPVSLHFVRNHGPVPYVPDENILDWEVSIEG 101
Query: 173 FKHSDEKLKLVKVM--------------AGNISQEDSKL--------AAKDIASDPY--- 207
              +  K+KL  +M              AGN  +E + +         A   ++  +   
Sbjct: 102 MVETPYKIKLSDIMEQFDIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGC 161
Query: 208 ----VMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQ 263
               V+   R P  +A  +    A+ P +  Y + +R+ +C    + I+  ++    W  
Sbjct: 162 MLGDVIGKAR-PSKRARFVWMEGADNPANGAYGTCIRLSWCMDPERCIMIAYQQNGEWLH 220
Query: 264 NDYK------------GFS------------PSTDWD------------TVDFAKSP--- 284
            D+             G S            PS +W             T + AKS    
Sbjct: 221 PDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRW 280
Query: 285 ------AIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTW 338
                 AI +L + + IC P     +K+   + E+ G+ ++GGG  I R++V++D+G++W
Sbjct: 281 WKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSW 340
Query: 339 HVANFTGQDS---QAPLTRHWG-------------WTLWRATIPVD--PKTKEVSIMDM 379
            +A+    +    +A   R +G             W  W+  +P+    ++K++ I  M
Sbjct: 341 KLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGM 399

>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its Interaction With Cytochrome C Length = 82

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKA-AGGSIEPFWAMYGVH 80
           +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGGE +++A AGG     +   G H
Sbjct: 4   YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVG-H 61
Query: 81  LQDEVFELLESYRIGNISQED 101
             D   EL +++ IG +  +D
Sbjct: 62  STD-ARELSKTFIIGELHPDD 81

>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cytochrome B5 Length = 82

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKA-AGGSIEPFWAMYGVH 80
           +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGGE +++A AGG     +   G H
Sbjct: 4   YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVG-H 61
Query: 81  LQDEVFELLESYRIGNISQED 101
             D   EL +++ IG +  +D
Sbjct: 62  STD-ARELSKTFIIGELHPDD 81

>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5 Length = 82

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYG 78
           + +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGG E++ + AGG     W   G
Sbjct: 2   VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENWEDVG 60
Query: 79  VHLQDEVFELLESYRIGNISQED 101
            H  D   EL +++ IG +  +D
Sbjct: 61  -HSTD-ARELSKTFIIGELHPDD 81

>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant (E48aE56AD60A) Length = 82

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKA-AGGSIEPFWAMYGVH 80
           +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGGE +++A AGG     +   G H
Sbjct: 4   YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVG-H 61
Query: 81  LQDEVFELLESYRIGNISQED 101
             D   EL +++ IG +  +D
Sbjct: 62  STD-ARELSKTFIIGELHPDD 81

>pdb|2BII|A Chain A, Crystal Structure Of Nitrate-Reducing Fragment Of Assimilatory Nitrate Reductase From Pichia Angusta Length = 424

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 137/347 (39%), Gaps = 99/347 (28%)
Query: 131 PYNAEPPPSMLVEN-FLTPSLLSQV---GSSTITLDQAIVSKQLS--SFKHSDEKLKLVK 184
           P+N+EPP + L ++ FLTP  L  V   G      D+ I+  ++S      +  K+KL  
Sbjct: 4   PFNSEPPLTKLYDSGFLTPVSLHFVRNHGPVPYVPDENILDWEVSIEGMVETPYKIKLSD 63
Query: 185 VM--------------AGNISQEDSKL--------AAKDIASDPY-------VMEPVRSP 215
           +M              AGN  +E + +         A   ++  +       V+   R P
Sbjct: 64  IMEQFDIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKAR-P 122
Query: 216 LLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQNDYK-------- 267
             +A  +    A+ P +  Y + +R+ +C    + I+  ++    W   D+         
Sbjct: 123 SKRARFVWMEGADNPANGAYGTCIRLSWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIP 182
Query: 268 ----GFS------------PSTDWD------------TVDFAKSP---------AIQELP 290
               G S            PS +W             T + AKS          AI +L 
Sbjct: 183 GVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERYAIYDLN 242
Query: 291 VISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDS-- 348
           + + IC P     +K+   + E+ G+ ++GGG  I R++V++D+G++W +A+    +   
Sbjct: 243 LQTIICKPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKLADIDYPEDRY 302
Query: 349 -QAPLTRHWG-------------WTLWRATIPVD--PKTKEVSIMDM 379
            +A   R +G             W  W+  +P+    ++K++ I  M
Sbjct: 303 REAGYFRLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGM 349

>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5 Length = 104

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 15  EPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEP 72
           E    + +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGGE +++  A G + E 
Sbjct: 3   ESSKAVKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATEN 61
Query: 73  FWAMYGVHLQDEVFELLESYRIGNISQED 101
           F     V    +  EL +++ IG +  +D
Sbjct: 62  FE---DVGHSTDARELSKTFIIGELHPDD 87

>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYG 78
           + +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGG E++ + AGG     +  +G
Sbjct: 2   VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHG 60
Query: 79  VHLQDEVFELLESYRIGNISQED 101
            H  D   EL +++ IG +  +D
Sbjct: 61  -HSTD-ARELSKTFIIGELHPDD 81

>pdb|1CYO|A Chain A, Bovine Cytochrome B(5) Length = 93

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
           + +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGGE +++  A G + E F    
Sbjct: 4   VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 59
Query: 78  GVHLQDEVFELLESYRIGNISQED 101
            V    +  EL +++ IG +  +D
Sbjct: 60  DVGHSTDARELSKTFIIGELHPDD 83

>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant V61h Length = 82

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKA-AGGSIEPFWAMYG 78
           + +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGGE +++  AGG     +  +G
Sbjct: 2   VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHG 60
Query: 79  VHLQDEVFELLESYRIGNISQED 101
            H  D   EL +++ IG +  +D
Sbjct: 61  -HSTD-ARELSKTFIIGELHPDD 81

>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized Microsomal Rabbit Cytochrome B5 Length = 104

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 13  AGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSI 70
           A +    + +Y+L +I+ H   KS+ W++    VYD+T+F++ HPGGE +++  A G + 
Sbjct: 2   AAQSDKDVKYYTLEEIKKHNHSKST-WLILHHKVYDLTKFLEEHPGGEEVLREQAGGDAT 60
Query: 71  EPFWAMYGVHLQDEVFELLESYRIGNISQED-SKLA 105
           E F     V    +  EL +++ IG +  +D SKL+
Sbjct: 61  ENF---EDVGHSTDARELSKTFIIGELHPDDRSKLS 93

>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human Cytochrome B5 Length = 108

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMYGV 79
           +Y+L +IQ H   KS+ W++    VYD+T+F++ HPGGE +++  A G + E F     V
Sbjct: 11  YYTLEEIQKHNHSKST-WLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFE---DV 66
Query: 80  HLQDEVFELLESYRIGNISQED 101
               +  E+ +++ IG +  +D
Sbjct: 67  GHSTDAREMSKTFIIGELHPDD 88

>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii) Length = 415

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 580 HSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSV 639
           H  F PE+  +A     H        EG V+ +  S R    +   +  +  F  +    
Sbjct: 83  HVMFGPEIIEVATFRGHH--------EGNVSDRTTSQRG---QNGMLLRDNIFGSIEEDA 131
Query: 640 QDKDRSFR------LDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFAR 693
           Q +D +         D TV DY  G +DLK GV   +G+P +R +ED +R+LR  RF A+
Sbjct: 132 QRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAK 191
Query: 694 ICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKE 739
           +    +    E +  +   L+   +I   R++ E  K+L   +  E
Sbjct: 192 LGMRISPETAEPIPRLATLLN---DIPPARLFEESLKLLQAGYGYE 234

>pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-adding Enzyme In Complex With Ctp Length = 404

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 650 GTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAI 709
           GT+ D F G E +++ +   VG+   R +ED LR++R  RF + +        E+   AI
Sbjct: 124 GTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELGFALAPDTEQ---AI 180
Query: 710 KNNLDGLHNISGERIWTELNKILGGSFSKEMM 741
             N   L +IS ER+  E+ K+LGG F+   +
Sbjct: 181 VQNAPLLAHISVERMTMEMEKLLGGPFAARAL 212

>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
           + +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGGE +++  A G + E F    
Sbjct: 2   VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--- 57
Query: 78  GVHLQDEVFELLESYRIGNISQED 101
            V    +  EL +++ IG +  +D
Sbjct: 58  DVGHSTDARELSKTFIIGELHPDD 81

>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit Cytochrome B5. Factors Determining The Heterogeneous Binding Of The Heme Length = 94

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
           + +Y+L +I+ H   KS+ W++    VYD+T+F++ HPGGE +++  A G + E F    
Sbjct: 4   VKYYTLEEIKKHNHSKST-WLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENF---E 59
Query: 78  GVHLQDEVFELLESYRIGNISQED-SKLA 105
            V    +  EL +++ IG +  +D SKL+
Sbjct: 60  DVGHSTDARELSKTFIIGELHPDDRSKLS 88

>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5 Length = 82

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK-AAGGSIEPFWAMYGVH 80
           +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGGE +++  AGG     +   G H
Sbjct: 4   YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFEDVG-H 61
Query: 81  LQDEVFELLESYRIGNISQED 101
             D   EL +++ IG +  +D
Sbjct: 62  STD-ARELSKTFIIGELHPDD 81

>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant Length = 82

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYG 78
           + +Y+L +IQ H + KS+ W++    VYDIT F+  HPGG E++++ AG      +   G
Sbjct: 2   VKYYTLEEIQKHNNAKST-WMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESFEDVG 60
Query: 79  VHLQDEVFELLESYRIGNISQED 101
            H  D   E+L+++ IG +  +D
Sbjct: 61  -HSPD-AREMLKTFIIGELHPDD 81

>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5 Length = 82

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVH 80
           +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGG E++ + AGG     +   G H
Sbjct: 4   YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENYEDVG-H 61
Query: 81  LQDEVFELLESYRIGNISQED 101
             D   EL +++ IG +  +D
Sbjct: 62  STD-ARELSKTFIIGELHPDD 81

>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMYGV 79
           +Y+L +IQ H + KS+ W++    VYD+T++++ HPGGE +++  A G + E F     V
Sbjct: 4   YYTLEEIQKHNNSKST-WLILHYKVYDLTKYLEEHPGGEEVLREQAGGDATENF---EDV 59
Query: 80  HLQDEVFELLESYRIGNISQED 101
               +  EL +++ IG +  +D
Sbjct: 60  GHSTDARELSKTFIIGELHPDD 81

>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I) Length = 414

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 580 HSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSV 639
           H  F PE+  +A     H        EG V+ +  S R    +   +  +  F  +    
Sbjct: 82  HVMFGPEIIEVATFRGHH--------EGNVSDRTTSQRG---QNGMLLRDNIFGSIEEDA 130
Query: 640 QDKDRSFR------LDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFAR 693
           Q +D +         D TV DY  G +DLK GV   +G+P +R +ED +R+LR  RF A+
Sbjct: 131 QRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAK 190
Query: 694 I 694
           +
Sbjct: 191 L 191

>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii) Length = 415

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 580 HSCFTPELKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRKLTLSV 639
           H  F PE+  +A     H        EG V+ +  S R    +   +  +  F  +    
Sbjct: 83  HVMFGPEIIEVATFRGHH--------EGNVSDRTTSQRG---QNGMLLRDNIFGSIEEDA 131
Query: 640 QDKDRSFR------LDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFAR 693
           Q +D +         D TV DY  G +DLK GV   +G+P +R +ED +R+LR  RF A+
Sbjct: 132 QRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAK 191
Query: 694 I 694
           +
Sbjct: 192 L 192

>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5 Length = 82

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMYGV 79
           +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGGE  ++  A G + E F     V
Sbjct: 4   YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEYLREQAGGDATENF---EDV 59
Query: 80  HLQDEVFELLESYRIGNISQED 101
               +  EL +++ IG +  +D
Sbjct: 60  GHSTDARELSKTFIIGELHPDD 81

>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5 Length = 82

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG--EIIMKAAGGSIEPFWAMY 77
           + +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGG  E+  +A G + E F    
Sbjct: 2   VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEELREQAGGDATENFE--- 57
Query: 78  GVHLQDEVFELLESYRIGNISQED 101
            V    +  EL +++ IG +  +D
Sbjct: 58  DVGHSTDARELSKTFIIGELHPDD 81

>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant V45h Length = 82

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMY 77
           + +Y+L +IQ H + KS+ W++    VYD+T+F++ HPGGE  ++  A G + E F    
Sbjct: 2   VKYYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHPGGEEHLREQAGGDATENFE--- 57
Query: 78  GVHLQDEVFELLESYRIGNISQED 101
            V    +  EL +++ IG +  +D
Sbjct: 58  DVGHSTDARELSKTFIIGELHPDD 81

>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5 Length = 92

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 12  RAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI 70
           +  E  +++ +Y L ++     LK  +W+V    VYD+T F+  HPGG E++++ AG  +
Sbjct: 1   KGQEVETSVTYYRLEEVAKRNSLKE-LWLVIHGRVYDVTRFLNEHPGGEEVLLEQAG--V 57
Query: 71  EPFWAMYGVHLQDEVFELLESYRIGNISQEDSK 103
           +   +   V    +  E+L+ Y IG+I   D K
Sbjct: 58  DASESFEDVGHSSDAREMLKQYYIGDIHPSDLK 90

>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMK--AAGGSIEPFWAMYGV 79
           +Y+L +IQ H + KS+ W++    VYD+T+F++ H GGE +++  A G + E F     V
Sbjct: 4   YYTLEEIQKHNNSKST-WLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENF---EDV 59
Query: 80  HLQDEVFELLESYRIGNISQED 101
               +  EL +++ IG +  +D
Sbjct: 60  GHSTDARELSKTFIIGELHPDD 81

>pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-Adding Enzyme Length = 404

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 650 GTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAI 709
           GT+ D F G E +++ +   VG+   R +ED LR  R  RF + +        E+   AI
Sbjct: 124 GTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRXXRAVRFVSELGFALAPDTEQ---AI 180
Query: 710 KNNLDGLHNISGERIWTELNKILGGSFSKEMM 741
             N   L +IS ER   E  K+LGG F+   +
Sbjct: 181 VQNAPLLAHISVERXTXEXEKLLGGPFAARAL 212

>pdb|2XTS|A Chain A, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From Paracoccus Pantotrophus Length = 390

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 293 SAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPL 352
           S I  P     ++     + + G AWSG G+ I RVDV++D G+ W  A  TGQ     L
Sbjct: 266 SVITSPSPQVPIRHGKGPLVISGLAWSGNGR-ITRVDVSLDGGKNWTTARITGQALPKAL 324
Query: 353 TR 354
           TR
Sbjct: 325 TR 326

>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 93

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHL 81
           +Y L ++  H +   S W+V    VYD+T F+  HPGGE +++   G+ +   +   V  
Sbjct: 12  YYRLEEVAKH-NTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGA-DATESFEDVGH 69
Query: 82  QDEVFELLESYRIGNISQEDSK 103
             +  E+ + Y IG++   D K
Sbjct: 70  SPDAREMSKQYYIGDVHPNDLK 91

>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 87

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHL 81
           +Y L ++   ++     W+V    VYD+T F+  HPGGE +++   G+ +   +   V  
Sbjct: 6   YYRLEEVAK-RNTSEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAGA-DATESFEDVGH 63
Query: 82  QDEVFELLESYRIGNISQEDSK 103
             +  E+L+ Y IG++   D K
Sbjct: 64  SPDAREMLKQYYIGDVHPNDLK 85

>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 92

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVH 80
           +Y L ++   ++     W+V    VYDIT F+  HPGG E++++ AG      +   G H
Sbjct: 11  YYRLEEVAK-RNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESFEDLG-H 68
Query: 81  LQDEVFELLESYRIGNISQEDSK 103
             D   E+L+ Y IG++   D K
Sbjct: 69  SPD-AREMLKQYYIGDVHPNDLK 90

>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 86

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 22  WYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVH 80
           +Y L ++   ++     W+V    VYDIT F+  HPGG EI+++ AG      +   G H
Sbjct: 6   YYRLEEVAK-RNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIG-H 63
Query: 81  LQDEVFELLESYRIGNISQEDSK 103
             D   E+L+ Y IG++   D K
Sbjct: 64  SPD-AREMLKQYYIGDVHPNDLK 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	939
1ou5_A	448	TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas	2e-41
1ou5_A	448	TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas	8e-17
1ou5_A	448	TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas	2e-16
1ou5_A	448	TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas	3e-16
2a9d_A	372	Sulfite oxidase; molybdopterin, molybdenum, oxidor	1e-35
2a9d_A	372	Sulfite oxidase; molybdopterin, molybdenum, oxidor	2e-13
2a9d_A	372	Sulfite oxidase; molybdopterin, molybdenum, oxidor	7e-11
2a9d_A	372	Sulfite oxidase; molybdopterin, molybdenum, oxidor	3e-09
2a9d_A	372	Sulfite oxidase; molybdopterin, molybdenum, oxidor	3e-06
1sox_A	466	Sulfite oxidase; oxidoreductase, sulfite oxidation	1e-34
1sox_A	466	Sulfite oxidase; oxidoreductase, sulfite oxidation	4e-30
1sox_A	466	Sulfite oxidase; oxidoreductase, sulfite oxidation	2e-13
1sox_A	466	Sulfite oxidase; oxidoreductase, sulfite oxidation	1e-09
1ogp_A	393	Sulfite oxidase; oxidoreductase, molybdenum cofact	8e-33
1ogp_A	393	Sulfite oxidase; oxidoreductase, molybdenum cofact	1e-14
1ogp_A	393	Sulfite oxidase; oxidoreductase, molybdenum cofact	4e-12
1ogp_A	393	Sulfite oxidase; oxidoreductase, molybdenum cofact	2e-08
1ogp_A	393	Sulfite oxidase; oxidoreductase, molybdenum cofact	1e-05
2bii_A	424	Nitrate reductase [NADPH]; FAD, flavoprotein, heme	3e-31
2bii_A	424	Nitrate reductase [NADPH]; FAD, flavoprotein, heme	5e-11
2bii_A	424	Nitrate reductase [NADPH]; FAD, flavoprotein, heme	6e-11
2bih_A	474	Nitrate reductase [NADPH]; flavoprotein, nitrate a	8e-31
2bih_A	474	Nitrate reductase [NADPH]; flavoprotein, nitrate a	7e-11
2bih_A	474	Nitrate reductase [NADPH]; flavoprotein, nitrate a	8e-11
2bih_A	474	Nitrate reductase [NADPH]; flavoprotein, nitrate a	2e-06
2blf_A	373	SORA, sulfite\:cytochrome C oxidoreductase subunit	2e-30
2blf_A	373	SORA, sulfite\:cytochrome C oxidoreductase subunit	5e-11
2blf_A	373	SORA, sulfite\:cytochrome C oxidoreductase subunit	1e-09
2blf_A	373	SORA, sulfite\:cytochrome C oxidoreductase subunit	9e-07
2xts_A	390	Sulfite dehydrogenase; oxidoreductase-electron tra	4e-30
2xts_A	390	Sulfite dehydrogenase; oxidoreductase-electron tra	4e-10
2xts_A	390	Sulfite dehydrogenase; oxidoreductase-electron tra	2e-09
1miw_A	404	TRNA CCA-adding enzyme; tRNA nucleotidyltransferas	2e-26
1miw_A	404	TRNA CCA-adding enzyme; tRNA nucleotidyltransferas	6e-12
1miw_A	404	TRNA CCA-adding enzyme; tRNA nucleotidyltransferas	5e-09
1miw_A	404	TRNA CCA-adding enzyme; tRNA nucleotidyltransferas	1e-07
1mj4_A	82	Sulfite oxidase; cytochrome B5, heme, oxidoreducta	3e-26
3aql_A	415	Poly(A) polymerase; transferase/RNA, ATP-binding,	1e-18
3aql_A	415	Poly(A) polymerase; transferase/RNA, ATP-binding,	8e-10
3aql_A	415	Poly(A) polymerase; transferase/RNA, ATP-binding,	3e-05
3ner_A	92	Cytochrome B5 type B; heme, electron transport; HE	3e-17
3h38_A	441	TRNA nucleotidyl transferase-related protein; tran	3e-17
3h38_A	441	TRNA nucleotidyl transferase-related protein; tran	8e-09
3h38_A	441	TRNA nucleotidyl transferase-related protein; tran	7e-06
1hko_A	104	Cytochrome B5; electron transfer protein, heme, el	4e-17
2keo_A	112	Probable E3 ubiquitin-protein ligase HERC2; protei	7e-17
2ibj_A	88	Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif	8e-17
1x3x_A	82	Cytochrome B5; hemoprotein, porcine parasitic nama	2e-16
1cyo_A	93	Cytochrome B5; electron transport; HET: HEM; 1.50A	3e-16
1cxy_A	90	Cytochrome B5; helix, beta-strand, electron transp	9e-16
3lf5_A	88	Cytochrome B5 reductase 4; NCB5OR, electron transf	3e-15
1vfg_A	390	A-adding enzyme, poly A polymerase; transferase, R	1e-14
1vfg_A	390	A-adding enzyme, poly A polymerase; transferase, R	2e-06
1vfg_A	390	A-adding enzyme, poly A polymerase; transferase, R	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	3e-08

>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Length = 448

 Score =  157 bits (399), Expect = 2e-41
 Identities = 101/380 (26%), Positives = 145/380 (38%), Gaps = 68/380 (17%)

Query: 537 HPSG--YQPRATLQGARLLTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELK------ 588
           H SG   +     + A       +  S    +  D KMKL SPEF S FT  LK      
Sbjct: 7   HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKMKLQSPEFQSLFTEGLKSLTELF 66

Query: 589 -------RLAG----------------------------IFEKHGYQLRIA-GE--GTVT 610
                  R+AG                            +F+  G ++    GE  GT+T
Sbjct: 67  VKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTIT 126

Query: 611 AK-------VLSYRNRREKEDRIGENQPFRKLTLSVQDKDR--------SFRLDGTVYDY 655
           A+       + + R     + R  E +         +D +R            DGT++DY
Sbjct: 127 ARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQ---KDAERRDLTINSMFLGFDGTLFDY 183

Query: 656 FNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDG 715
           FNG+EDLK     FVG    RIQEDYLRILRYFRF+ RI + P +H  E L AI  N  G
Sbjct: 184 FNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKG 243

Query: 716 LHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSE 775
           L  ISGERIW EL KIL G+    ++  +   ++  +  L A      + E  K  +  +
Sbjct: 244 LAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPAN---ASLEEFDKVSKNVD 300

Query: 776 LIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTE 835
                    L +     + + +   R        K   L  +K   D +           
Sbjct: 301 GFSPKPVTLLASLFKVQDDVTKLDLR-LKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKP 359

Query: 836 LNKILGGSFSKEMMLKMLEI 855
               +  S   +   ++ E+
Sbjct: 360 YQDFIIDSREPDATTRVCEL 379

>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Length = 448

 Score = 83.0 bits (205), Expect = 8e-17
 Identities = 33/56 (58%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
           D+L G KP DIDFAT ATP QMK MF    +R  N +GEKHGT+ AR++ +ENFE+
Sbjct: 82  DLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLH-EENFEI 136

>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Length = 448

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 34/42 (80%), Positives = 37/42 (88%)

Query: 898 ITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFLGMK 939
           ITTLRIDVTTDGRHAEV+FT DW+ DA RRDLT+NSMFLG  
Sbjct: 136 ITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFD 177

>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Length = 448

 Score = 81.4 bits (201), Expect = 3e-16
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 794 IIR--QFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLK 851
           I+R  +F+ RI + P +H  E L AI +N  GL  ISGERIW EL KIL G+    ++  
Sbjct: 212 ILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHL 271

Query: 852 MLEINMFPHLGTDETFATLDFEGLFRSM----PIPFTLL 886
           + ++++ P++G     +  +F+ + +++    P P TLL
Sbjct: 272 IYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLL 310

>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A* Length = 372

 Score =  138 bits (350), Expect = 1e-35
 Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 5/129 (3%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES SHWQQNDYKGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 211 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGE 270

Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
               V+GYAWSGGG+ +VRVDV++D GRTW VA   G  +  P  R W W LW  T+PV+
Sbjct: 271 L--TVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKA--PPGRAWAWALWELTVPVE 326

Query: 369 PKTKEVSIM 377
               E+ I+
Sbjct: 327 AG-TELEIV 334

>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A* Length = 372

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)

Query: 436 VKGLTW--GHAAV--------GNATWTGARLVDVLKAAGISPDQSLDSADVQH---VHVE 482
           VKG  W  G   V        G  TW  ARL+      G +   +L    V       +E
Sbjct: 273 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 332

Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
           I  KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 333 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 370

>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A* Length = 372

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 395 TPDQMKAMFAEEKVRTFNEKGEKHGTVCA---RMNDKENFEVKPVKGLTWGHAAVGNATW 451
           +  ++++ F + +V    +        CA   R    E   V+PVKGL W   A+  A W
Sbjct: 72  SLAELRSRFPKHEVTATLQ--------CAGNRR---SEMSRVRPVKGLPWDIGAISTARW 120

Query: 452 TGARLVDVLKAAGISPDQSLDSADVQHVHVE 482
            GARL DVL  AG   +         HV  E
Sbjct: 121 GGARLRDVLLHAGFPEELQ----GEWHVCFE 147

>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A* Length = 372

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPS 149
           DP+  +P R P L+  S KP+NAEPP  +L E FLTP+
Sbjct: 1   DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPN 38

>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A* Length = 372

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 205 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLL 239
           DP+  +P R P L+  S KP+NAEPP  +L    L
Sbjct: 1   DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFL 35

>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Length = 466

 Score =  137 bits (347), Expect = 1e-34
 Identities = 68/129 (52%), Positives = 84/129 (65%), Gaps = 5/129 (3%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           +V +S  ES SHWQQNDYKGFSP  DWDTVD+  +PAIQELPV SA+  P   A +    
Sbjct: 305 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGE 364

Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
               V+GYAWSGGG+ +VRVDV++D GRTW VA   G  +  P  R W W LW  T+PV+
Sbjct: 365 L--TVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKA--PPGRAWAWALWELTVPVE 420

Query: 369 PKTKEVSIM 377
               E+ I+
Sbjct: 421 AG-TELEIV 428

>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Length = 466

 Score =  124 bits (312), Expect = 4e-30
 Identities = 56/133 (42%), Positives = 87/133 (65%), Gaps = 3/133 (2%)

Query: 18  STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAM 76
            + P Y+  ++  H+  +  +WV     V+D+T+FV++HPGG + I+ AAGG++EPFWA+
Sbjct: 2   PSYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWAL 61

Query: 77  YGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEP 136
           Y VH +  V ELL+ Y++G +S +++   A   A DP+  +P R P L+  S KP+NAEP
Sbjct: 62  YAVHGEPHVLELLQQYKVGELSPDEAP--AAPDAQDPFAGDPPRHPGLRVNSQKPFNAEP 119

Query: 137 PPSMLVENFLTPS 149
           P  +L E FLTP+
Sbjct: 120 PAELLAERFLTPN 132

>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Length = 466

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 13/98 (13%)

Query: 436 VKGLTW--GHAAV--------GNATWTGARLVDVLKAAGISPDQSLDSADVQH---VHVE 482
           VKG  W  G   V        G  TW  ARL+      G +   +L    V       +E
Sbjct: 367 VKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELE 426

Query: 483 IWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
           I  KAVDSSYN QP+S A IWNLRGVLS A+HRVRV +
Sbjct: 427 IVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSV 464

>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Length = 466

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 395 TPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGA 454
           +  ++++ F + +V    +        CA     E   V+PVKGL W   A+  A W GA
Sbjct: 166 SLAELRSRFPKHEVTATLQ--------CAGNRRSEMSRVRPVKGLPWDIGAISTARWGGA 217

Query: 455 RLVDVLKAAGISPDQSLDSADVQHVHVE 482
           RL DVL  AG       +     HV  E
Sbjct: 218 RLRDVLLHAGFPE----ELQGEWHVCFE 241

>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1 Length = 393

 Score =  130 bits (329), Expect = 8e-33
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 8/131 (6%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
            + +   ES   + Q DYK F PS +WD ++++      + PV SAIC       +K   
Sbjct: 224 SINVIAEESQGFFMQKDYKMFPPSVNWDNINWSSRRPQMDFPVQSAICSVEDVQMVKPGK 283

Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRH-----WGWTLWRA 363
               ++GYA SGGG+ I RVD+++D G+ W  A+ T +  +  ++ H     W W L+ A
Sbjct: 284 V--SIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEA 341

Query: 364 TIPVDPKTKEV 374
           TI V  +T EV
Sbjct: 342 TIDV-SQTTEV 351

>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1 Length = 393

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 18/108 (16%)

Query: 436 VKGLTWGHAAV----------GNATWTGARLVDVLKAAGISPDQSLDSADVQHVHV---- 481
           +KG                  G   W  A          IS   S D             
Sbjct: 286 IKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEATIDV 345

Query: 482 ----EIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAV 525
               E+ +KAVDS+ N QPE+  ++WNLRGVL+ ++HRV + +    +
Sbjct: 346 SQTTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLRLGHSNL 393

>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1 Length = 393

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 428 KENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVE 482
               +V+ V+G+ W  +A+GNA W GA+L DVL+  GI    +  +   +HV   
Sbjct: 104 TAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFV 158

>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1 Length = 393

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPS 149
             Y  EP R P LK  + +P+NAEPP S LV +++TP 
Sbjct: 8   SEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTPV 45

>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1 Length = 393

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 205 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLL 239
             Y  EP R P LK  + +P+NAEPP S L SS +
Sbjct: 8   SEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYV 42

>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum, nitrate assimilation, oxidoreductase; HET: MTV; 1.70A {Pichia angusta} Length = 424

 Score =  126 bits (319), Expect = 3e-31
 Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 22/151 (14%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFA------KSPAIQELPVISAICLPVADA 302
           K+++SD  S + +   D +        +           +  AI +L + + IC P    
Sbjct: 195 KLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQ 254

Query: 303 KLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQD--------------- 347
            +K+   + E+ G+ ++GGG  I R++V++D+G++W +A+    +               
Sbjct: 255 VIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGL 314

Query: 348 -SQAPLTRHWGWTLWRATIPVDPKTKEVSIM 377
            +         W  W+  +P+    +   I+
Sbjct: 315 VNVCDRMSCLCWCFWKLKVPLSELARSKDIL 345

>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum, nitrate assimilation, oxidoreductase; HET: MTV; 1.70A {Pichia angusta} Length = 424

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 22/91 (24%), Positives = 27/91 (29%), Gaps = 21/91 (23%)

Query: 395 TPDQMKAMFAEEKVRTFNEKGEKHGTVCA---RMNDKENFEVKPVKGLTWGHAAVGNATW 451
               +   F                  CA   R   KE   VK   G  WG A    + W
Sbjct: 60  KLSDIMEQFDIYSTPVTMV--------CAGNRR---KEQNMVKKGAGFNWGAAGTSTSLW 108

Query: 452 TGARLVDVLKAAGISPDQSLDSADVQHVHVE 482
           TG  L DV+  A  S          + V +E
Sbjct: 109 TGCMLGDVIGKARPSK-------RARFVWME 132

>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum, nitrate assimilation, oxidoreductase; HET: MTV; 1.70A {Pichia angusta} Length = 424

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 481 VEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSG 540
            +I  + +D     QP +    WN+  +L+N ++RV +    +++   +        P G
Sbjct: 342 KDILIRGMDERMMVQPRTM--YWNVTSMLNNWWYRVAIIREGESLRFEHPVVA--NKPGG 397

Query: 541 YQPRATLQGARLL 553
           +  R   +G  +L
Sbjct: 398 WMDRVKAEGGDIL 410

>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta} Length = 474

 Score =  126 bits (317), Expect = 8e-31
 Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 22/151 (14%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFA------KSPAIQELPVISAICLPVADA 302
           K+++SD  S + +   D +        +           +  AI +L + + IC P    
Sbjct: 245 KLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQ 304

Query: 303 KLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQD--------------- 347
            +K+   + E+ G+ ++GGG  I R++V++D+G++W +A+    +               
Sbjct: 305 VIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGL 364

Query: 348 -SQAPLTRHWGWTLWRATIPVDPKTKEVSIM 377
            +         W  W+  +P+    +   I+
Sbjct: 365 VNVCDRMSCLCWCFWKLKVPLSELARSKDIL 395

>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta} Length = 474

 Score = 64.5 bits (157), Expect = 7e-11
 Identities = 22/91 (24%), Positives = 27/91 (29%), Gaps = 21/91 (23%)

Query: 395 TPDQMKAMFAEEKVRTFNEKGEKHGTVCA---RMNDKENFEVKPVKGLTWGHAAVGNATW 451
               +   F                  CA   R   KE   VK   G  WG A    + W
Sbjct: 110 KLSDIMEQFDIYSTPVTMV--------CAGNRR---KEQNMVKKGAGFNWGAAGTSTSLW 158

Query: 452 TGARLVDVLKAAGISPDQSLDSADVQHVHVE 482
           TG  L DV+  A  S          + V +E
Sbjct: 159 TGCMLGDVIGKARPSK-------RARFVWME 182

>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta} Length = 474

 Score = 64.5 bits (157), Expect = 8e-11
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 481 VEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSG 540
            +I  + +D     QP +    WN+  +L+N ++RV +    +++   +        P G
Sbjct: 392 KDILIRGMDERMMVQPRTM--YWNVTSMLNNWWYRVAIIREGESLRFEHPVVA--NKPGG 447

Query: 541 YQPRATLQGARLL 553
           +  R   +G  +L
Sbjct: 448 WMDRVKAEGGDIL 460

>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta} Length = 474

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 77  YGVHLQDEVFELLESYRIGNISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEP 136
           +  H   ++ EL    R  +   E      K    D +V       LL+ T   P+N+EP
Sbjct: 4   HHHHHHQDITELPFPVRQDSPLTEVLPTDLKT--KDNFV--ARDPDLLRLTGSHPFNSEP 59

Query: 137 PPSMLV-ENFLTPS 149
           P + L    FLTP 
Sbjct: 60  PLTKLYDSGFLTPV 73

>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A* Length = 373

 Score =  122 bits (309), Expect = 2e-30
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSP--AIQELPVISAICLPVADAKLKL 306
           ++ + D E    W +  Y+    +        A +    I    V S I      A +K 
Sbjct: 219 EITVIDKEFDGFWMKTAYRIPDNACACTEPGKAPTATIPINRFDVRSFITNVENGASVKA 278

Query: 307 ENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIP 366
                 ++G A+ GG   I +V V+ D G++W  A       +      + +  W+A +P
Sbjct: 279 GEV--PLRGIAFDGGYG-ITQVSVSADAGKSWTNATLDPGLGK------YSFRGWKAVLP 329

Query: 367 VDPKTKEV 374
           +      +
Sbjct: 330 LTKGDHVL 337

>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A* Length = 373

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 27/100 (27%)

Query: 435 PVKGLTW-GHAAV--------GNATWTGARLVDVLKAAGISPDQSLDS-------ADVQH 478
           P++G+ + G   +           +WT A L          P     S         +  
Sbjct: 282 PLRGIAFDGGYGITQVSVSADAGKSWTNATL---------DPGLGKYSFRGWKAVLPLTK 332

Query: 479 VHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRV 518
               +  +A ++   TQP      WN  G + N     RV
Sbjct: 333 GDHVLMCRATNARGETQPMQ--ATWNPAGYMRNVVEATRV 370

>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A* Length = 373

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 14/76 (18%)

Query: 395 TPDQMKAMFAEEKVRTFNEKGEKHGTVCA--RMNDKENFEVKPVKGLTWGHAAVGNATWT 452
           +   +K  F   +V   N+        C+         F    V G    + A+GNA W 
Sbjct: 85  SLQDLKNDFPASEVVAVNQ--------CSGNSRG----FVEPRVGGGQLANGAMGNARWR 132

Query: 453 GARLVDVLKAAGISPD 468
           G  L  VL+ AG+   
Sbjct: 133 GVPLKAVLEKAGVQAG 148

>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A* Length = 373

 Score = 51.2 bits (123), Expect = 9e-07
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 110 ASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPS 149
              P VM P + PL+  T+ +P   E P S+  E  +TP+
Sbjct: 11  GERPLVMYPGKRPLIGLTA-RPPQLETPFSVFDEGLITPN 49

>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus} Length = 390

 Score =  122 bits (309), Expect = 4e-30
 Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLEN 308
           ++ + D    S  + + Y    P                 +   S I  P     ++   
Sbjct: 229 RLGIYDKAVESREETSKYTDLMPDGRAR-------KWTWVMDAKSVITSPSPQVPIRHGK 281

Query: 309 HQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD 368
             + + G AWSG G+ I RVDV++D G+ W  A  TGQ            T +   I  D
Sbjct: 282 GPLVISGLAWSGNGR-ITRVDVSLDGGKNWTTARITGQALP------KALTRFHLDIDWD 334

Query: 369 PKTKEV 374
                +
Sbjct: 335 GSEMLL 340

>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus} Length = 390

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 27/107 (25%)

Query: 436 VKGLTW-GHAAV--------GNATWTGARLVDVLKAAGISPDQSLDS-------ADVQHV 479
           + GL W G+  +        G   WT AR+         +      +        D    
Sbjct: 286 ISGLAWSGNGRITRVDVSLDGGKNWTTARI---------TGQALPKALTRFHLDIDWDGS 336

Query: 480 HVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVD 526
            + + S+AVD +   QP   A +  +RG  +N YH   ++ W    D
Sbjct: 337 EMLLQSRAVDETGYVQPTKDA-LRAIRG-RNNVYHNNGIQTWWVKAD 381

>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus} Length = 390

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 18/106 (16%)

Query: 363 ATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVC 422
             I +  +   + I    + +KP    F      + +                      C
Sbjct: 78  GAIELSKQDYRLMIN--GLVEKPLVFTF------EDLLRFPRTTTTAFC---------EC 120

Query: 423 ARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPD 468
           A  N    +    ++G  +    + N  + G  L  +L  AG+ P+
Sbjct: 121 AA-NGGMEWGGAQLEGCQYTQGMIHNMEYVGVPLSVLLAEAGVKPE 165

>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Length = 404

 Score =  111 bits (280), Expect = 2e-26
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 3/107 (2%)

Query: 646 FRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEV 705
               GT+ D F G E +++ +   VG+   R +ED LR++R  RF + +         + 
Sbjct: 120 MDEYGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELGFALA---PDT 176

Query: 706 LSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLF 752
             AI  N   L +IS ER+  E+ K+LGG F+   +  +    L  +
Sbjct: 177 EQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY 223

>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Length = 404

 Score = 67.7 bits (166), Expect = 6e-12
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
           D+L+G+   D+D AT+A P+ + A+F   K     + G KHGTV       + +EV
Sbjct: 31  DLLLGRPIGDVDIATSALPEDVMAIF--PKTI---DVGSKHGTVVVVHKG-KAYEV 80

>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Length = 404

 Score = 58.5 bits (142), Expect = 5e-09
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 898 ITTLRIDVTTDG--RHAEVQFTEDWKLDANRRDLTVNSMFL 936
           +TT + D   +   R   V F    + D  RRD T+N++ +
Sbjct: 80  VTTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAM 120

>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Length = 404

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 811 EEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHL-GTDETFAT 869
            +   AI +N   L +IS ER+  E+ K+LGG F+   +  + E  +  +L G       
Sbjct: 174 PDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAYLPGLAGKEKQ 233

Query: 870 LDFEGLFRSMPIPFTLLFSANFFRNLARITTLRIDVTTDGRHAEVQFTEDWKLD 923
           L     +R   +               R   L   +   G      F   WKL 
Sbjct: 234 LRLAAAYRWPWLAAREE----------RWALLCHAL---GVQESRPFLRAWKLP 274

>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 Length = 82

 Score =  101 bits (255), Expect = 3e-26
 Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
          +   Y+  ++ +H   ++ IWV     V+D+TEFV +HPGG   +M AAGG +EPFWA+Y
Sbjct: 3  STHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALY 62

Query: 78 GVHLQDEVFELLESYRIGNI 97
           VH Q  V ELL  Y+IG +
Sbjct: 63 AVHNQSHVRELLAQYKIGEL 82

>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Length = 415

 Score = 88.2 bits (219), Expect = 1e-18
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 649 DGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSA 708
           D TV DY  G +DLK GV   +G+P +R +ED +R+LR  RF A++    +    E    
Sbjct: 147 DFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRIS---PETAEP 203

Query: 709 IKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL 750
           I      L++I    ++ E  K+L   +  E    +   +L 
Sbjct: 204 IPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLF 245

>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Length = 415

 Score = 60.8 bits (148), Expect = 8e-10
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
           D+L+GKKP D D  TNATP+Q++ +F     R     G +           E  EV
Sbjct: 44  DLLLGKKPKDFDVTTNATPEQVRKLF--RNCR---LVGRRFRLAHVMFGP-EIIEV 93

>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Length = 415

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 811 EEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHL 861
            E    I +    L++I    ++ E  K+L   +  E    + E ++F  L
Sbjct: 198 PETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPL 248

>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Length = 92

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 12  RAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI 70
           +  E  +++ +Y L ++         +W+V    VYD+T F+  HPGG E++++ AG   
Sbjct: 1   KGQEVETSVTYYRLEEVAKRNS-LKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDA 59

Query: 71  -EPFWAMYGVHLQDEVFELLESYRIGNISQEDSK 103
            E F     V    +  E+L+ Y IG+I   D K
Sbjct: 60  SESFED---VGHSSDAREMLKQYYIGDIHPSDLK 90

>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Length = 441

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 18/175 (10%)

Query: 649 DGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSA 708
            G + D+F G+ DLK+GV   +        +D  RILR  RF  R         E     
Sbjct: 145 FGLLIDFFGGYRDLKEGVIRVLHTL--SFVDDPTRILRAIRFEQRFDFRIE---ETTERL 199

Query: 709 IKNNLD--GLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVE 766
           +K  ++   L   +G R+  EL KIL      +  ++ + Q  ++          +++  
Sbjct: 200 LKQAVEEGYLERTTGPRLRQELEKILEEKNPLK-SIRRMAQFDVI----------KHLFP 248

Query: 767 LMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNL 821
              Y    +   +     +P    N   + +F+A +      + +E    ++   
Sbjct: 249 KTYYTPSMDEKMENLFRNIPWVEENFGEVDRFYAVLHVFLEFYDDESWKEVRDRY 303

>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Length = 441

 Score = 57.8 bits (140), Expect = 8e-09
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
           D+L+G K  DID        +         +     K +K  T    +      ++
Sbjct: 46  DLLLGIKNLDIDIVVEGNALEFAEYAK-RFLPGKLVKHDKFMTASLFLKGGLRIDI 100

>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Length = 441

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 811 EEVLSAIKKNLD--GLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHL 861
           E     +K+ ++   L   +G R+  EL KIL      + + +M + ++  HL
Sbjct: 194 ETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHL 246

>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* Length = 104

 Score = 76.6 bits (189), Expect = 4e-17
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 13  AGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIE 71
           A E    + +Y+L +IQ H +   S W++    VYD+T+F++ HPGG E++ + AGG   
Sbjct: 1   AEESSKAVKYYTLEEIQKHNN-SKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDAT 59

Query: 72  PFWAMYGVHLQDEVFELLESYRIGNISQEDSKLAAKD 108
                  V    +  EL +++ IG +  +D     K 
Sbjct: 60  --ENFEDVGHSTDARELSKTFIIGELHPDDRSKITKP 94

>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} Length = 112

 Score = 76.4 bits (188), Expect = 7e-17
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 6   KALSKLRAGEPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMK 64
                L        +    ++D++NH +     W V    VYDI +F         I+ +
Sbjct: 9   SGRENLYFQGNNEKVTLVRIADLENHNN-DGGFWTVIDGKVYDIKDFQTQSLTENSILAQ 67

Query: 65  AAGGSI-EPFWAMYGVHLQDEVFELLESYRIGNISQEDSK 103
            AG                ++  E + ++ +G   + D +
Sbjct: 68  FAGEDPVVAL---EAALQFEDTRESMHAFCVGQYLEPDQE 104

>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Length = 88

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 16  PISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EPF 73
               + +++ +++  +   K   W +    VYD+T F+  HPGG E++++ AG    E F
Sbjct: 2   SSEDVKYFTRAEVAKNNT-KDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHF 60

Query: 74  WAMYGVHLQDEVFELLESYRIGNISQED 101
                V    +  E+++ Y++G +  E+
Sbjct: 61  ED---VGHSSDAREMMKQYKVGELVAEE 85

>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum} Length = 82

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPFWAMYGVHLQ 82
          Y+  ++  H   ++ +W+++   V+D+T F + HPGG++I+  AG            H++
Sbjct: 6  YTKEEVAKHNT-QNDLWIIYDGEVHDMTSFYKEHPGGKVILNKAGQDATSVLKTLAPHVK 64

Query: 83 --DEVFELLESYRIGNI 97
            D V + L+   IG +
Sbjct: 65 AADVVMKKLKQTCIGKV 81

>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Length = 93

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 18  STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EPFWA 75
             + +Y+L +IQ H +   S W++    VYD+T+F++ HPGG E++ + AGG   E F  
Sbjct: 2   KAVKYYTLEEIQKHNN-SKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFED 60

Query: 76  MYGVHLQDEVFELLESYRIGNISQEDSKLAAK 107
              V    +  EL +++ IG +  +D     K
Sbjct: 61  ---VGHSTDARELSKTFIIGELHPDDRSKITK 89

>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 Length = 90

 Score = 72.4 bits (178), Expect = 9e-16
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 15  EPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EP 72
           E  +TLP ++L  +  H       W+     VYD+T +V  HPG   +++   G    E 
Sbjct: 2   ETEATLPVFTLEQVAEHHS-PDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEA 60

Query: 73  FWAMYGVHL-QDEVFELLESYRIGNISQE 100
           +               LL+ Y IG + + 
Sbjct: 61  WETKSYGEPHSSLAARLLQRYLIGTLEEI 89

>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Length = 88

 Score = 70.8 bits (174), Expect = 3e-15
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 18  STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGG-SIEPFWA 75
             L   +  +++ H   K   W+  R  VY+++ +++ HPGG + +M+AAG    E F  
Sbjct: 3   GRLIEVTEEELKKHNK-KDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQ 61

Query: 76  MYGVHLQDEVFELLESYRIGNISQEDSKL 104
              VH       +L+   +G ++ + + L
Sbjct: 62  ---VHRWVNYESMLKECLVGRMAIKPAVL 87

>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Length = 390

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 650 GTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRILRYFRFFAR----ICNNPNNHKEEV 705
           GT+ DYF G  DLK  V   +        ED +RILR  RF  R    +           
Sbjct: 121 GTLIDYFGGLRDLKDKVIRVLHPV--SFIEDPVRILRALRFAGRLNFKL-------SRST 171

Query: 706 LSAIKN--NLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQ 747
              +K   NL  L      R+  E+   L      E +L++  +
Sbjct: 172 EKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLE-ILELYRK 214

>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Length = 390

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEV 433
           D+L+GK+  D+DF       ++    A  +         + GT   ++   +  E 
Sbjct: 22  DILLGKEVWDVDFVVEGNAIELAKELA-RRHGVNVHPFPEFGTAHLKIGKLK-LEF 75

>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Length = 390

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 8/124 (6%)

Query: 811 EEVLSAIKK--NLDGLHNISGERIWTELNKILGGSFSKEMMLKMLEINMFPHL--GTDET 866
                 +K+  NL  L      R+  E+   L      E++    +  +   +  G    
Sbjct: 169 RSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWN 228

Query: 867 FATLDFEGLFRSMPIPFTLLFSANFFRNLA-RITTLRIDVTTDGRHAEVQFTEDWKLDAN 925
              L      R +     L FS          +  L  ++          F E+    + 
Sbjct: 229 EKVLQKLYALRKVVDWHALEFSEERIDYGWLYLLILISNL---DYERGKHFLEEMSAPSW 285

Query: 926 RRDL 929
            R+ 
Sbjct: 286 VRET 289

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 5e-09
 Identities = 68/450 (15%), Positives = 126/450 (28%), Gaps = 129/450 (28%)

Query: 469 QSLDSADVQHVHVEIWSKA-VDSSYNTQPE---SFANIWNLRGVLSNAYHRVRVEIWSKA 524
            + D  DVQ +   I SK  +D    ++     +    W L         +  VE   + 
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VE---EV 86

Query: 525 VDSSYN-----TQPENGHPSGYQPRATLQGARLLTRPP--NPHSV-RFKSGPDGKMKLDS 576
           +  +Y       + E   PS        Q  RL         ++V R        +KL  
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR----LQPYLKL-- 140

Query: 577 PEFHSCFTPELKRLAGIFEKHGYQLRIAGEG--TVTAKVLSYRNRREKEDRIGENQPFRK 634
                    EL+    +    G    + G G   V   V           ++     F+ 
Sbjct: 141 ---RQALL-ELRPAKNVL-IDG----VLGSGKTWVALDVC-------LSYKVQCKMDFKI 184

Query: 635 --LTLSVQDKDRS---------FRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLR 683
             L L   +   +         +++D       +   ++K            RI      
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-----------LRIHSIQAE 233

Query: 684 ILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELN---KILGGSFSKEM 740
           + R  +           ++  +L  +   L    N+   + W   N   KIL        
Sbjct: 234 LRRLLK--------SKPYENCLL--V---LL---NVQNAKAWNAFNLSCKIL-------- 269

Query: 741 MLKMLYQNLLLFSKLKATTMREYIVELMKYK-EKSELIKDFHKW------RLP-----TF 788
              +  +   +   L A T     ++         E+     K+       LP     T 
Sbjct: 270 ---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 789 PMNGNII----RQFFARICNNPNNHKEEVLSAIKKNLDGLH------------------N 826
           P   +II    R   A   N  + + +++ + I+ +L+ L                   +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 827 ISG---ERIWTELNKILGGSFSKEMMLKML 853
           I       IW ++ K        ++    L
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 1e-08
 Identities = 79/565 (13%), Positives = 169/565 (29%), Gaps = 175/565 (30%)

Query: 377 MDMLMGKKPH---DI----------DFATNATPDQMKAMFAEEKVR-TFNEKGEKHGTVC 422
           MD   G+  +   DI          +F      D  K++ ++E++      K    GT+ 
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL- 65

Query: 423 ARMNDKENFEVKPVKGLTWGHAAVG-----NATWTGARLVDVLKAAGISPDQSLDSADVQ 477
            R+        K  + +      V      N  +    L+  +K     P  S+ +    
Sbjct: 66  -RLFWT--LLSKQEEMV---QKFVEEVLRINYKF----LMSPIKTEQRQP--SMMT---- 109

Query: 478 HVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENG- 536
                ++ +  D  YN   + FA            Y+  R++ + K   +    +P    
Sbjct: 110 ----RMYIEQRDRLYND-NQVFAK-----------YNVSRLQPYLKLRQALLELRPAKNV 153

Query: 537 --H---PSGYQPRA--TLQGARLLTRPPNP-HSVRFKSGPDGKMKLDSPEFHSCFTPE-- 586
                  SG    A       ++  +       +  K               +C +PE  
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK---------------NCNSPETV 198

Query: 587 LKRLAGIFEKHGYQLRIAGEGTVTAKVLSYRNRREKEDRIGENQPFRK--LTLS-VQDKD 643
           L+ L  +  +         + +   K L   + + +  R+ +++P+    L L  VQ+  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 644 --RSFRL---------DGTVYDYFNG---------------HEDLKKGVCA-FVGDPVSR 676
              +F L            V D+ +                  D  K +   ++      
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 677 IQEDYLRI-----------LRYFRFFARICNNPNNHKEEVLSAIKNNLDGLH-------- 717
           +  + L             +R     A   N  + + +++ + I+++L+ L         
Sbjct: 318 LPREVLTTNPRRLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 718 ----------NISG---ERIWTELNKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYI 764
                     +I       IW ++ K         +++  L++  L+  + K +T+    
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKS-----DVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 765 VELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDG- 823
           +  ++ K K E     H+          +I+  +      + ++        I   LD  
Sbjct: 431 I-YLELKVKLENEYALHR----------SIVDHYNIPKTFDSDD-------LIPPYLDQY 472

Query: 824 --------LHNISGERIWTELNKIL 840
                   L NI      T    + 
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVF 497

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 5e-04
 Identities = 61/417 (14%), Positives = 121/417 (29%), Gaps = 131/417 (31%)

Query: 20  LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEII---MKAAGGSI------ 70
              Y++S +Q +  L        RQ +       ++ P   ++   +  +G +       
Sbjct: 126 FAKYNVSRLQPYLKL--------RQALL------ELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 71  -----------EPFWAMYG-VHLQDEVFELLES--YRI-GNISQEDSKLAAKDIASDPYV 115
                      + FW      +  + V E+L+   Y+I  N +           ++    
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-----SSNIKLR 226

Query: 116 MEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGSSTITLDQAIVSKQLSSFKH 175
           +  +++ L +    KPY       +LV        L  V ++             ++F  
Sbjct: 227 IHSIQAELRRLLKSKPY----ENCLLV--------LLNVQNAKA----------WNAF-- 262

Query: 176 SDEKLKLVKVMAGNISQEDSKLAAK------DIASDPYVMEPVRSPLLKATSLKPYNAEP 229
            +   K++ +        D   AA       D  S     + V+S LLK    +P   + 
Sbjct: 263 -NLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDL 318

Query: 230 PPSMLYSSLLRIPFCSHTGKVI-LSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQE 288
           P  +L ++  R+        +I  S  +  + W             W  V+  K   I E
Sbjct: 319 PREVLTTNPRRL-------SIIAESIRDGLATWDN-----------WKHVNCDKLTTIIE 360

Query: 289 LPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQ---GRTWHVANFTG 345
                   L V +          E +         ++      I        W   +   
Sbjct: 361 ------SSLNVLEPA--------EYRKMFDR---LSVFPPSAHIPTILLSLIW--FDVIK 401

Query: 346 QDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAM 402
            D    + +   ++L    +   PK   +SI           I        +   A+
Sbjct: 402 SDVMVVVNKLHKYSL----VEKQPKESTISI---------PSIYLELKVKLENEYAL 445

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 24  SLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EPFWAMYGVHL 81
           S +++  H       WVV    VYD+T F+  HPGG ++I   AG  +   F     +H 
Sbjct: 12  SPAEVAKHNK-PDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIF---EPLHA 67

Query: 82  QDEVFELLE-SYRIGNISQE-DSKLAAKDIASDPYVMEPVRSPLLKAT 127
            + + + +    ++G +      +L     A      +  R   LK+ 
Sbjct: 68  PNVIDKYIAPEKKLGPLQGSMPPELVCPPYAPGETKEDIARKEQLKSL 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	939
1sox_A	466	Sulfite oxidase; oxidoreductase, sulfite oxidation	100.0
2a9d_A	372	Sulfite oxidase; molybdopterin, molybdenum, oxidor	100.0
1ogp_A	393	Sulfite oxidase; oxidoreductase, molybdenum cofact	100.0
2bih_A	474	Nitrate reductase [NADPH]; flavoprotein, nitrate a	100.0
2bii_A	424	Nitrate reductase [NADPH]; FAD, flavoprotein, heme	100.0
2blf_A	373	SORA, sulfite\:cytochrome C oxidoreductase subunit	100.0
2xts_A	390	Sulfite dehydrogenase; oxidoreductase-electron tra	100.0
3h38_A	441	TRNA nucleotidyl transferase-related protein; tran	100.0
1ou5_A	448	TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas	100.0
1vfg_A	390	A-adding enzyme, poly A polymerase; transferase, R	100.0
1miw_A	404	TRNA CCA-adding enzyme; tRNA nucleotidyltransferas	100.0
3aql_A	415	Poly(A) polymerase; transferase/RNA, ATP-binding,	100.0
1xdy_A	298	Bacterial sulfite oxidase; bioinformatics, sequenc	99.96
2a9d_A	372	Sulfite oxidase; molybdopterin, molybdenum, oxidor	99.94
2blf_A	373	SORA, sulfite\:cytochrome C oxidoreductase subunit	99.93
1ogp_A	393	Sulfite oxidase; oxidoreductase, molybdenum cofact	99.93
1sox_A	466	Sulfite oxidase; oxidoreductase, sulfite oxidation	99.93
2bih_A	474	Nitrate reductase [NADPH]; flavoprotein, nitrate a	99.92
2bii_A	424	Nitrate reductase [NADPH]; FAD, flavoprotein, heme	99.92
2xts_A	390	Sulfite dehydrogenase; oxidoreductase-electron tra	99.9
1ou5_A	448	TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas	99.8
1mj4_A	82	Sulfite oxidase; cytochrome B5, heme, oxidoreducta	99.79
3ner_A	92	Cytochrome B5 type B; heme, electron transport; HE	99.79
3h38_A	441	TRNA nucleotidyl transferase-related protein; tran	99.78
1miw_A	404	TRNA CCA-adding enzyme; tRNA nucleotidyltransferas	99.78
1cyo_A	93	Cytochrome B5; electron transport; HET: HEM; 1.50A	99.77
1hko_A	104	Cytochrome B5; electron transfer protein, heme, el	99.76
2ibj_A	88	Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif	99.75
3lf5_A	88	Cytochrome B5 reductase 4; NCB5OR, electron transf	99.75
1cxy_A	90	Cytochrome B5; helix, beta-strand, electron transp	99.74
1vfg_A	390	A-adding enzyme, poly A polymerase; transferase, R	99.72
1x3x_A	82	Cytochrome B5; hemoprotein, porcine parasitic nama	99.72
1xdy_A	298	Bacterial sulfite oxidase; bioinformatics, sequenc	99.71
3aql_A	415	Poly(A) polymerase; transferase/RNA, ATP-binding,	99.71
2keo_A	112	Probable E3 ubiquitin-protein ligase HERC2; protei	99.68
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	99.39
1j03_A	102	Putative steroid binding protein; alpha and beta,	99.08
3pe9_A	98	Fibronectin(III)-like module; CBHA, beta-sandwich,	98.08
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	93.67
3pdd_A	190	Glycoside hydrolase, family 9; CBHA, beta-sandwich	87.8

>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*

Probab=100.00  E-value=6.1e-82  Score=727.86  Aligned_cols=387  Identities=43%  Similarity=0.760  Sum_probs=347.3

Q ss_pred             CCCCCcCHHHHhhccCCCCC-eEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccc
Q psy11686         18 STLPWYSLSDIQNHKDLKSS-IWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIG   95 (939)
Q Consensus        18 ~~~~~~t~~ev~~h~~~~~~-~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG   95 (939)
                      ++++.||++||++||+.+ + |||+|+|+|||||+|++.|||| +.|+.++|+|++.|++.+..|||..++++|++|+||
T Consensus         2 ~~~~~~t~~Ev~~H~~~~-d~~Wvii~g~VYDvT~fl~~HPGG~~~il~~aG~DT~~f~~~~~~~Hs~~a~~~L~~~~IG   80 (466)
T 1sox_A            2 PSYPEYTREEVGRHRSPE-ERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVLELLQQYKVG   80 (466)
T ss_dssp             -CCCEECHHHHTTCEETT-TEEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSBSHHHHHHSGGGGSHHHHHHHHTTEEE
T ss_pred             CCCCeeCHHHHHHhcCCC-CceEEEECCEEEechHhHhhCcCCcccchhhcCCccccccccccccCCHHHHHHHHhCceE
Confidence            356899999999999874 6 9999999999999999999999 899999999988887655578999999999999999


Q ss_pred             ccCccchhhhhcccCCCCCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee-----------EEEEEeec
Q psy11686         96 NISQEDSKLAAKDIASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS-----------STITLDQA  164 (939)
Q Consensus        96 ~l~~~~~~~~~~~~~~d~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~-----------w~l~v~~G  164 (939)
                      .|.+++.... . ...+++.++|.|+|.|++++.+|||+|||++.|.+++|||+++||+||           |+|+|+ |
T Consensus        81 ~l~~~~~~~~-~-~~~~~~~~~p~~~~~l~~~~~~p~n~E~p~~~l~~~~iTp~~~~yvr~h~~vP~id~~~w~L~V~-G  157 (466)
T 1sox_A           81 ELSPDEAPAA-P-DAQDPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTRNHLPVPAVEPSSYRLRVD-G  157 (466)
T ss_dssp             EECCCCCCC--C-SSSCTTTTCCCCCTTSEEEETTTTEEECCHHHHTSSSSCCGGGSCEECSSCCCCCCGGGCEEEEE-C
T ss_pred             Eecccccccc-c-cccCccccCCCcCcceEEccCCCcccCCChHHhccccccccccEEEccCCCCCccCCCCeEEEEe-c
Confidence            9988775432 2 257899999999999999999999999999999889999999999999           999999 9


Q ss_pred             ccCCcceeeeHHHHHHhccc-------eeccccC---------------------ccCccccHHHHHhCCCCC-------
Q psy11686        165 IVSKQLSSFKHSDEKLKLVK-------VMAGNIS---------------------QEDSKLAAKDIASDPYVM-------  209 (939)
Q Consensus       165 ~v~~~p~~~t~~dl~~~~p~-------~C~gn~~---------------------~~~~~~~~~~vL~~~g~~-------  209 (939)
                      +|++ |++||++||+++||+       +|+||+|                     ..|+|++++|||++||+.       
T Consensus       158 ~V~~-p~~ltl~dL~~~lp~~~~~~~l~C~gN~r~~~~~~~~v~G~~W~~gai~~~~W~Gv~L~dlL~~ag~~~~~~~a~  236 (466)
T 1sox_A          158 PGGG-TLSLSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEW  236 (466)
T ss_dssp             TTSC-CEEEEHHHHHHHSCEEEEEEEEECTTTTHHHHHTTSCCSSCCCCTTSEEEEEEEEEEHHHHHHHTTCCSCCSSCC
T ss_pred             ccCC-ceEeeHHHHHhhCCCeEEEEEEEecCCCcccccccccccccccccCceecceEEEEEHHHHHHHcCCCCCCCCcE
Confidence            9998 999999999967999       9999974                     357788899999999984       


Q ss_pred             -------C------CC--CcchhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCc
Q psy11686        210 -------E------PV--RSPLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSH  260 (939)
Q Consensus       210 -------d------~~--~ipl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~  260 (939)
                             |      +|  ||||++||++       |+|||||||++ ||||||||||      ||||++|+|++++++||
T Consensus       237 ~V~~~~~D~~~~~~~Y~~sipl~~a~~p~~~~lLA~~mNGepL~~~hG~PlRlvvPg~~G~~svKwl~~I~v~~~~~~~~  316 (466)
T 1sox_A          237 HVCFEGLDADPGGAPYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSH  316 (466)
T ss_dssp             EEEEEEEEECTTCCEEEEEEEHHHHHCTTTCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCSH
T ss_pred             EEEEEecCCCCCCCCEEEEeEHHHHhCCCCCEEEEECcCCeECChhcCceEEEEecchhheeeeeeccEEEEEeCCCCCc
Confidence                   2      22  5999999973       99999999999 9999999999      99999999999999999


Q ss_pred             ccccCCCccCCCCCCCCccCCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEE
Q psy11686        261 WQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHV  340 (939)
Q Consensus       261 w~~~~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~  340 (939)
                      ||++||+.++|..+.+.++|...++|++|+|||+|+.|.+|++|+.  |+++|+||||||||++|+|||||+|||+||+.
T Consensus       317 w~~~~Y~~~~p~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~--g~~~v~G~A~sggg~~I~rVEVS~DgG~tW~~  394 (466)
T 1sox_A          317 WQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPP--GELTVKGYAWSGGGREVVRVDVSLDGGRTWKV  394 (466)
T ss_dssp             HHHSSSCCCCTTCCTTTCCGGGSCCCCBCCCEEEEEESCTTCEECS--EEEEEEEEEECSTTCCEEEEEEESBTTSSCEE
T ss_pred             ceecCceecCCCCCccccccccccccccccccEEEecCCCCCEecc--ceEEEEEEEEcCCCCCEEEEEEEcCCCCcceE
Confidence            9999999999988877777888899999999999999999999984  79999999999989999999999999999999


Q ss_pred             eeeCCCCCCCCCCCceeEEEeEEEeecCCCCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcceee
Q psy11686        341 ANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGT  420 (939)
Q Consensus       341 A~l~~~~~~~~~~~~~~W~~W~~~~~~~~~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l  420 (939)
                      |+|.++..+  ..++|||++|+++|++++++.                                                
T Consensus       395 A~l~~~~~~--~~~~~~W~~W~~~~~~~~g~~------------------------------------------------  424 (466)
T 1sox_A          395 ARLMGDKAP--PGRAWAWALWELTVPVEAGTE------------------------------------------------  424 (466)
T ss_dssp             CEECSCCCC--TTCCCSCEEEEEEEEECTTCE------------------------------------------------
T ss_pred             eecCCcccc--cCCccEEEEEEEeEEcCCCCE------------------------------------------------
Confidence            999976532  457899999999998876521                                                


Q ss_pred             ccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCCCC
Q psy11686        421 VCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFA  500 (939)
Q Consensus       421 ~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~~~  500 (939)
                                                                                  ..+.+||+|..+|.||....
T Consensus       425 ------------------------------------------------------------~~i~~RA~D~~g~~QP~~~~  444 (466)
T 1sox_A          425 ------------------------------------------------------------LEIVCKAVDSSYNVQPDSVA  444 (466)
T ss_dssp             ------------------------------------------------------------EEEEEEEEETTCCBCCSCSG
T ss_pred             ------------------------------------------------------------EEEEEEEEcCCCCcCCCCcc
Confidence                                                                        44568999999999998766


Q ss_pred             CCCCcceeecceeeEEEEEEe
Q psy11686        501 NIWNLRGVLSNAYHRVRVEIW  521 (939)
Q Consensus       501 ~g~p~R~vvp~~~~~~~i~~~  521 (939)
                      .-||+|+++.|.||+++|+|.
T Consensus       445 ~~wn~~G~~~n~~~~v~v~v~  465 (466)
T 1sox_A          445 PIWNLRGVLSTAWHRVRVSVQ  465 (466)
T ss_dssp             GGCCTTCCCCCSCEEEEEEEC
T ss_pred             CCcCCCCcccceEEEEEEEEe
Confidence            679999999999999999886

>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*

Probab=100.00  E-value=3.9e-63  Score=555.97  Aligned_cols=296  Identities=44%  Similarity=0.738  Sum_probs=265.7

Q ss_pred             CCCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHH
Q psy11686        112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKL  180 (939)
Q Consensus       112 d~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~  180 (939)
                      |||.++|.|++.|++++.+|||+|||++.|.+++|||+++||+||           |+|+|+ |+|++ |++||++||++
T Consensus         1 ~p~~~~p~r~~~l~~~~~~P~n~E~p~~~l~~~~iTP~~~~yvr~h~~vP~id~~~w~L~V~-G~V~~-p~~ltl~dL~~   78 (372)
T 2a9d_A            1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTRNHLPVPAVEPSSYRLRVD-GPGGR-TLSLSLAELRS   78 (372)
T ss_dssp             CTTTTCCCCCTTSEEEETTTTEEECCHHHHTSSSSCCTTTSCEECSSCCCCCCTTTCEEEEE-CC----CEEEEHHHHHH
T ss_pred             CCCCcCCCCCCCceEcCCCCCccCCChHHhccCCcCCchheeEecCCCCCcccCCCeEEEEE-eEcCC-ceEEeHHHHHh
Confidence            578889999999999999999999999999889999999999999           999999 99998 99999999996


Q ss_pred             hccc-------eeccccC---------------------ccCccccHHHHHhCCCCC--------------C------CC
Q psy11686        181 KLVK-------VMAGNIS---------------------QEDSKLAAKDIASDPYVM--------------E------PV  212 (939)
Q Consensus       181 ~~p~-------~C~gn~~---------------------~~~~~~~~~~vL~~~g~~--------------d------~~  212 (939)
                      +||+       +|+||+|                     ..|+|++++|||++||+.              |      +|
T Consensus        79 ~lp~~~~~~~l~C~gN~r~~~~~~~~v~G~~w~~gav~~~~W~GV~L~dlL~~ag~~~~~~~a~~V~~~~~D~~~~~~~Y  158 (372)
T 2a9d_A           79 RFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHVCFEGLDADPGGAPY  158 (372)
T ss_dssp             HSCCEEEEEEEECTTTTHHHHHTTSCCSSCCCCTTSEEEEEEEEEEHHHHHHHTTCCSCCSSCCEEEEEEEEECTTCCEE
T ss_pred             hCCCeEEEEEEEecCCchhhccccccccccccccCceecceEEeEEHHHHHHhcCCCcCCCCcEEEEEEecCCCCCCCCe
Confidence            7999       9999974                     357888899999999984              2      22


Q ss_pred             --CcchhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCC
Q psy11686        213 --RSPLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWD  276 (939)
Q Consensus       213 --~ipl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~  276 (939)
                        ||||++||++       |+|||||||++ ||||||||||      ||||++|+|++++++||||++||+.++|..+.+
T Consensus       159 ~~sipl~~a~dp~~d~lLA~~mNGepL~~~hG~PlRlVvPg~~G~ksvKwl~~I~v~~~~~~~~w~~~~Y~~~~p~~~~~  238 (372)
T 2a9d_A          159 GASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWD  238 (372)
T ss_dssp             EEEEEHHHHHCGGGCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCCHHHHSSSCCCCTTCCTT
T ss_pred             EEEeEHHHHhCCCCCEEEEECCCCeECCcccCceEEEEecchhheeecceeeEEEEeccCCCCcceecceeEcCCCCCcc
Confidence              5999999983       99999999999 9999999999      999999999999999999999999999988877


Q ss_pred             CccCCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCce
Q psy11686        277 TVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHW  356 (939)
Q Consensus       277 ~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~  356 (939)
                      .++|...++|++|+|||+|+.|.+|++|+.  ++++|+||||||||++|+|||||+|||+||+.|+|.++..  +..++|
T Consensus       239 ~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~--g~~~v~G~A~sGgg~~I~rVEVS~DgG~tW~~A~l~~~~~--~~~~~~  314 (372)
T 2a9d_A          239 TVDYRTAPAIQELPVQSAVTQPRPGAAVPP--GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKA--PPGRAW  314 (372)
T ss_dssp             TCCGGGSCCCCBCCCEEEEEESCTTCEECS--EEEEEEEEEECSTTCCEEEEEEESBSSSSCEECEECSCCC--CTTCCC
T ss_pred             ccccccCcccccccccEEEecCCCCCEecc--ceEEEEEEEEcCCCCCEEEEEEEcCCCCcceEeEcCCccc--ccCCcc
Confidence            777888899999999999999999999984  7999999999998999999999999999999999997653  245789


Q ss_pred             eEEEeEEEeecCCCCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcceeeccCCCCCCCccccCCC
Q psy11686        357 GWTLWRATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPV  436 (939)
Q Consensus       357 ~W~~W~~~~~~~~~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~  436 (939)
                      ||++|+++|++++++.                                                                
T Consensus       315 ~W~~W~~~~~~~~g~~----------------------------------------------------------------  330 (372)
T 2a9d_A          315 AWALWELTVPVEAGTE----------------------------------------------------------------  330 (372)
T ss_dssp             SCEEEEEEEEECTTCE----------------------------------------------------------------
T ss_pred             EEEEEEEeEEcCCCCE----------------------------------------------------------------
Confidence            9999999998876521                                                                


Q ss_pred             CCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCCCCCCCCcceeecceeeEE
Q psy11686        437 KGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRV  516 (939)
Q Consensus       437 ~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~~~~g~p~R~vvp~~~~~~  516 (939)
                                                                  ..+.++|+|..+|.||.....-||+|+++.|.||++
T Consensus       331 --------------------------------------------~~i~~RA~D~~g~~QP~~~~~~wn~~G~~~n~~~~v  366 (372)
T 2a9d_A          331 --------------------------------------------LEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRV  366 (372)
T ss_dssp             --------------------------------------------EEEEEEEEETTCCBCCSCSGGGCCTTCCCCCSCEEE
T ss_pred             --------------------------------------------EEEEEEEEcCCCCcCCCCccCCcCCCCcccceEEEE
Confidence                                                        445689999999999987666799999999999999


Q ss_pred             EEEEe
Q psy11686        517 RVEIW  521 (939)
Q Consensus       517 ~i~~~  521 (939)
                      +|+|.
T Consensus       367 ~v~v~  371 (372)
T 2a9d_A          367 RVSVQ  371 (372)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99885

>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1

Probab=100.00  E-value=3.4e-60  Score=535.66  Aligned_cols=255  Identities=30%  Similarity=0.472  Sum_probs=230.0

Q ss_pred             CCCCCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee------------EEEEEeecccCCcceeeeHHH
Q psy11686        110 ASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS------------STITLDQAIVSKQLSSFKHSD  177 (939)
Q Consensus       110 ~~d~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~------------w~l~v~~G~v~~~p~~~t~~d  177 (939)
                      ++++|..+|.+++.|++++.+|||+|||+..|.+++|||+++||+||            |+|+|+ |+|++ |++||++|
T Consensus         6 ~~~~~~~~~~~~~~l~~~~~~P~n~e~p~~~l~~~~iTP~~~~yvr~h~~vP~i~d~~~w~L~V~-G~V~~-p~~ltl~d   83 (393)
T 1ogp_A            6 GPSEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTPVDLFYKRNHGPIPIVDHLQSYSVTLT-GLIQN-PRKLFIKD   83 (393)
T ss_dssp             CCSSSTTCCCCCTTCEEEETTTTEEECCHHHHTSCSSCCGGGSCEECSSCCCEESCSTTCEEEEE-ESSSS-CCEEEHHH
T ss_pred             CCCccccCCCCCCCceEcCCCCCCCCCChHHcccCCcCCcccceEecCCCCCccCCCCceEEEEE-eEcCC-CeEeeHHH
Confidence            57899999999999999999999999999999889999999999998            999999 99998 99999999


Q ss_pred             HHHhccc-------eeccccC---------------------ccCccccHHHHHhCCCCC------------------C-
Q psy11686        178 EKLKLVK-------VMAGNIS---------------------QEDSKLAAKDIASDPYVM------------------E-  210 (939)
Q Consensus       178 l~~~~p~-------~C~gn~~---------------------~~~~~~~~~~vL~~~g~~------------------d-  210 (939)
                      |+ +||+       +|+||+|                     ..|+|++++|||++||+.                  | 
T Consensus        84 L~-~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aG~~~~a~~~~~~~~~V~f~g~D~  162 (393)
T 1ogp_A           84 IR-SLPKYNVTATLQCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFVSVDR  162 (393)
T ss_dssp             HH-TSCEEEEEEEEECTTTTHHHHHHHSCCCSCCCCSCCEEEEEEEEEEHHHHHHTTTCCTTCSCCTTCCCEEEEEESCC
T ss_pred             Hh-cCCCEEEEEEEEecCCccccccccccccCccccccceecceEEeeEHHHHHHhcCCCcccccccCcceEEEEEEcCc
Confidence            97 8999       9999865                     367888899999999975                  2 


Q ss_pred             -------CC--CcchhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCC
Q psy11686        211 -------PV--RSPLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYK  267 (939)
Q Consensus       211 -------~~--~ipl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~  267 (939)
                             +|  ||||++||++       |+|||||||++ ||||||||||      ||||++|+|++++++||||++||+
T Consensus       163 ~~~~~~~~Y~~sipl~~al~~~~~vlLA~~mNGepL~~~hG~PlRLVvPg~~G~rsvKwL~~I~v~~~~~~~~w~~~~Y~  242 (393)
T 1ogp_A          163 CKEENGGPYKASITLSQATNPEADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFMQKDYK  242 (393)
T ss_dssp             CGGGTTCCCEEEEEHHHHHCGGGCCEEEEEETTEECCTTTTTTCEEECTTSCGGGSCCSEEEEEEESSCCCCHHHHSSSC
T ss_pred             ccccCCCCeEEEeEHHHHhCCCCCEEEEeCcCCeECCcccCceEEEEeCccccceeeeeccEEEEEecCCCCcceecccc
Confidence                   23  5999999974       99999999999 9999999999      999999999999999999999999


Q ss_pred             ccCCCCCCCCccCCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCC
Q psy11686        268 GFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQD  347 (939)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~  347 (939)
                      +++++++++.+.+.+..+|++|++||+|+.|.++++++.  +.++|+||||+|||++|+|||||+|||+||+.|+|.++.
T Consensus       243 ~~p~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~--g~~~v~G~A~sGgg~~I~rVEVS~DgG~tW~~A~l~~~~  320 (393)
T 1ogp_A          243 MFPPSVNWDNINWSSRRPQMDFPVQSAICSVEDVQMVKP--GKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEP  320 (393)
T ss_dssp             CCCTTCCTTTCCGGGSCCCCSCCCEEEECSSCSEEEECS--EEEEEEEEEECSTTCCEEEEEEESSTTSSCEECEEESSS
T ss_pred             ccCCCCCcccccCCCCceeeeecccEEEeCCCCCCEecC--CcEEEEEEEEcCCCCCEEEEEEEcCCCCCceEeeccCcC
Confidence            999888776666666789999999999999999999974  679999999999889999999999999999999998743


Q ss_pred             -CC----CCCCCceeEEEeEEEeecCC
Q psy11686        348 -SQ----APLTRHWGWTLWRATIPVDP  369 (939)
Q Consensus       348 -~~----~~~~~~~~W~~W~~~~~~~~  369 (939)
                       .+    ..+.+.|||++|+++|++.+
T Consensus       321 ~~~~~~~~~~~~~~aW~~W~~~~~~~~  347 (393)
T 1ogp_A          321 GKQYISEHSSSDKWAWVLFEATIDVSQ  347 (393)
T ss_dssp             SSCCCSSSTTSCTTSCEEEEEEEEESS
T ss_pred             ccccccccccCCCCEEEEEEEEEecCC
Confidence             11    11247899999999998744

>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta}

Probab=100.00  E-value=1.4e-58  Score=528.91  Aligned_cols=309  Identities=23%  Similarity=0.372  Sum_probs=262.1

Q ss_pred             CCcc-ccccccCCCCCCCCCCCccc-cccccCCCCceEee--------------EEEEEeecccCCcceeeeHHHHHHhc
Q psy11686        119 VRSP-LLKATSLKPYNAEPPPSMLV-ENFLTPSLLSQVGS--------------STITLDQAIVSKQLSSFKHSDEKLKL  182 (939)
Q Consensus       119 ~r~p-~l~v~~~~P~n~e~p~~~l~-~~~~TP~~~~~v~~--------------w~l~v~~G~v~~~p~~~t~~dl~~~~  182 (939)
                      .|++ +|++++.+|||+|||++.|. .++|||+++||+||              |+|+|+ |+|++ |++||++||+++|
T Consensus        41 ~r~~~li~~~~~~P~n~E~p~~~L~~~~~iTP~~~~yvr~h~~vP~i~~~d~~~w~L~V~-G~V~~-p~~ltl~dL~~~l  118 (474)
T 2bih_A           41 ARDPDLLRLTGSHPFNSEPPLTKLYDSGFLTPVSLHFVRNHGPVPYVPDENILDWEVSIE-GMVET-PYKIKLSDIMEQF  118 (474)
T ss_dssp             CCCTTSEESSTTSSCEEECCHHHHHHTCSSCCGGGSCEECSSCCCCCCTTTGGGCEEEEE-ESBSS-CEEEEHHHHHHHS
T ss_pred             CCCcccEEecCCCCccCCCCHHHHhcccccCCCccEEEEecCCCCccccCCCCCeEEEEE-eecCC-ceEeeHHHHhhcC
Confidence            4554 66778899999999999996 48999999999995              999999 99998 9999999999449


Q ss_pred             cc-------eeccccC---------------------ccCccccHHHHHhCCCCC-----------C-----CC--Ccch
Q psy11686        183 VK-------VMAGNIS---------------------QEDSKLAAKDIASDPYVM-----------E-----PV--RSPL  216 (939)
Q Consensus       183 p~-------~C~gn~~---------------------~~~~~~~~~~vL~~~g~~-----------d-----~~--~ipl  216 (939)
                      |+       +|+||+|                     ..|+|+++++||+.||+.           |     +|  +|||
T Consensus       119 p~~~~~~~l~CvgN~r~e~~~v~~~~G~~W~~~avs~a~WtGV~L~dlL~~aG~~~~A~~V~f~g~D~~~~g~Y~~sipl  198 (474)
T 2bih_A          119 DIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKARPSKRARFVWMEGADNPANGAYGTCIRL  198 (474)
T ss_dssp             CCEEEEEEEECTTTTHHHHHHHSCCSSCCCCSCCEEEEEEEEEEHHHHHHHTCBCTTCCEEEEEESCCCTTSSCEEEEEH
T ss_pred             CCeEEEEEEEccCCccccccccccccccccccCceeeeEEEeEEHHHHHHhcCCCCCceEEEEEecCCCCCCCeEEEEEH
Confidence            99       9999964                     467899999999999975           3     23  5999


Q ss_pred             hhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCC-----
Q psy11686        217 LKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDT-----  277 (939)
Q Consensus       217 ~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~-----  277 (939)
                      ++||++       |+|||||||++ ||||||||||      ||||++|+|++++++||||.+||+++++.+.++.     
T Consensus       199 ~~ald~~~dvlLA~~mNGepLp~~hG~PlRLVvPg~~G~rsvKWL~~Iev~~~~~~g~~~~~~yrv~p~~~~~~~~~~~~  278 (474)
T 2bih_A          199 SWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDD  278 (474)
T ss_dssp             HHHTCTTTCCEEEEEETTEECCGGGTTTCEEECTTBBGGGSCSSEEEEEEESSCCCCHHHHHSSBCCCTTCCHHHHHTCG
T ss_pred             HHHhCcCCCEEEEEeeCCeECCccCCCeeEEEecccccCCccccCCEEEEEeccCCCceeeecccccCCCCCcccccccc
Confidence            999984       99999999999 9999999999      9999999999999999999999999987765432     


Q ss_pred             ccC-CCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCC-----
Q psy11686        278 VDF-AKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAP-----  351 (939)
Q Consensus       278 ~~~-~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~-----  351 (939)
                      ..| ++..+|++|+|||+||.|.++++|++.+++++|+||||||||++|+|||||+|||+||+.|+|..++.+..     
T Consensus       279 ~~W~~~~~~i~~~~vnS~I~~P~~~e~v~~~~g~~~v~GyA~sGGGr~I~RVEVS~DgG~TW~~A~L~~pe~~~r~~~~~  358 (474)
T 2bih_A          279 RWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYF  358 (474)
T ss_dssp             GGGSCGGGBCCBCCCEEEEEESCTTCEEECCSCEEEEEEEEECSTTCCEEEEEEESSSSSSCEECEEECTHHHHHHTCCE
T ss_pred             CccccCcceeeccccceEEecCCCCCEeecCCCeEEEEEEEEcCCCCCEEEEEEEcCCCCCceECcccCccccccccccc
Confidence            123 34568999999999999999999976457999999999998999999999999999999999987642110     


Q ss_pred             --C---------CCceeEEEeEEEeecCC--CCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcce
Q psy11686        352 --L---------TRHWGWTLWRATIPVDP--KTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKH  418 (939)
Q Consensus       352 --~---------~~~~~W~~W~~~~~~~~--~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~  418 (939)
                        +         ...|+|++|+++|++++  +.                                               
T Consensus       359 ~~~g~~~~~~~~~~~~~W~~W~~~~~~~~~~g~-----------------------------------------------  391 (474)
T 2bih_A          359 RLFGGLVNVCDRMSCLCWCFWKLKVPLSELARS-----------------------------------------------  391 (474)
T ss_dssp             EETTEEECGGGCCCCCSCEEEEEEEEHHHHHTC-----------------------------------------------
T ss_pred             cccccccccccccccceeeeeEEEEecccCCCc-----------------------------------------------
Confidence              1         25799999999998642  11                                               


Q ss_pred             eeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCC
Q psy11686        419 GTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPES  498 (939)
Q Consensus       419 ~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~  498 (939)
                                                                                    ..+++||+|..||.||..
T Consensus       392 --------------------------------------------------------------~~I~vRA~D~sgn~QP~~  409 (474)
T 2bih_A          392 --------------------------------------------------------------KDILIRGMDERMMVQPRT  409 (474)
T ss_dssp             --------------------------------------------------------------SEEEEEEEETTCCBCCSS
T ss_pred             --------------------------------------------------------------eEEEEEEEcCCCCcCCCC
Confidence                                                                          234589999999999986


Q ss_pred             CCCCCCcceeecceeeEEEEEEecCCcCceeecCCCCCCCCCCc
Q psy11686        499 FANIWNLRGVLSNAYHRVRVEIWSKAVDSSYNTQPENGHPSGYQ  542 (939)
Q Consensus       499 ~~~g~p~R~vvp~~~~~~~i~~~~~~~~~~y~~~~~~~~~~~~~  542 (939)
                      +  -||+|+++.|.|++++|++........+.+.|+  .+++||
T Consensus       410 ~--~WN~~G~~nN~~~rV~v~~~~~~~~f~hp~~~~--~~ggwm  449 (474)
T 2bih_A          410 M--YWNVTSMLNNWWYRVAIIREGESLRFEHPVVAN--KPGGWM  449 (474)
T ss_dssp             C--CCCTTCCSCCSCEEEEEEEETTEEEEECSCCSS--SCCSHH
T ss_pred             c--cccccccccCcEEEEEEEecCCEEEEeCCCCCC--CCCcCc
Confidence            4  699999999999999999865544666667777  456776

>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum, nitrate assimilation, oxidoreductase; HET: MTV; 1.70A {Pichia angusta}

Probab=100.00  E-value=1.8e-58  Score=523.77  Aligned_cols=300  Identities=22%  Similarity=0.355  Sum_probs=253.7

Q ss_pred             cCCCCCCCCCCCccc-cccccCCCCceEee--------------EEEEEeecccCCcceeeeHHHHHHhccc-------e
Q psy11686        128 SLKPYNAEPPPSMLV-ENFLTPSLLSQVGS--------------STITLDQAIVSKQLSSFKHSDEKLKLVK-------V  185 (939)
Q Consensus       128 ~~~P~n~e~p~~~l~-~~~~TP~~~~~v~~--------------w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~  185 (939)
                      +.+|||+|||++.|. +++|||+++||+||              |+|+|+ |+|++ |++||++||+++||+       +
T Consensus         1 g~~P~N~E~P~~~L~~~~~iTP~~~~yvr~h~~vP~i~~~d~~~w~L~V~-G~V~~-p~~ltl~dL~~~lp~~~~~~~l~   78 (424)
T 2bii_A            1 GSHPFNSEPPLTKLYDSGFLTPVSLHFVRNHGPVPYVPDENILDWEVSIE-GMVET-PYKIKLSDIMEQFDIYSTPVTMV   78 (424)
T ss_dssp             ---CEEECCCHHHHHHTCSSCCGGGSCEEESSCCCCCCGGGGGGCEEEEE-ESBSS-CEEEEHHHHHHHSCCEEEEEEEE
T ss_pred             CCCCccCCCCHHHHhhCCccCCchheEEecCCCCCccCcCCCCCeEEEEE-eecCC-ceEeeHHHHhccCCCeEEEEEEE
Confidence            368999999999996 48999999999998              999999 99998 999999999944999       9


Q ss_pred             eccccC---------------------ccCccccHHHHHhCCCCC-----------C-----CC--CcchhhhcCC----
Q psy11686        186 MAGNIS---------------------QEDSKLAAKDIASDPYVM-----------E-----PV--RSPLLKATSL----  222 (939)
Q Consensus       186 C~gn~~---------------------~~~~~~~~~~vL~~~g~~-----------d-----~~--~ipl~~a~~~----  222 (939)
                      |+||+|                     ..|+|++++|||+.||+.           |     +|  +|||++|+++    
T Consensus        79 C~gN~r~~~~~~~~~~G~~W~~~ai~~a~WtGV~L~dlL~~ag~~~~a~~V~f~~~D~~~~g~Y~~sipl~~a~d~~~dv  158 (424)
T 2bii_A           79 CAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKARPSKRARFVWMEGADNPANGAYGTCIRLSWCMDPERCI  158 (424)
T ss_dssp             CTTTTHHHHHHHSCCSSCCCCSCCEEEEEEEEEEHHHHHHHHCBCTTCCEEEEEESCCCTTSSCEEEEEHHHHTCTTTCC
T ss_pred             ecCCccccccccccccccccccCceEeeEEEeeEHHHHHHhcCCCCCceEEEEEecCCCCCCCEEEEEEHHHHhCCCCCE
Confidence            999964                     467899999999999975           3     23  5999999984    


Q ss_pred             ---CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCC-----ccC-CCCCCc
Q psy11686        223 ---KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDT-----VDF-AKSPAI  286 (939)
Q Consensus       223 ---~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~-----~~~-~~~~~i  286 (939)
                         |+|||||||++ ||||||||||      ||||++|+|++++++||||.++|+++++.+.++.     ..| ++..+|
T Consensus       159 lLA~~mNGepL~~~hG~PlRLVvPg~~G~rsvKwl~~I~v~~~~~~g~~~~~~yrv~p~~~~~~~~~~~~~~w~~~~~~i  238 (424)
T 2bii_A          159 MIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERYAI  238 (424)
T ss_dssp             EEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCCHHHHSSSBCCCTTCCHHHHHHCGGGGSCGGGBC
T ss_pred             EEEEeeCCcCCCcccCCceEEEecccccCCccccCcEEEEEeccCCCceeeecccccCCCCCccccccccCccccCccee
Confidence               99999999999 9999999999      9999999999999999999999999987765432     122 345689


Q ss_pred             ccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCC-------C-------
Q psy11686        287 QELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAP-------L-------  352 (939)
Q Consensus       287 ~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~-------~-------  352 (939)
                      ++|+|||+||.|.++++|++.+++++|+||||||||++|+|||||+|||+||+.|+|..++.+..       +       
T Consensus       239 ~~l~v~S~I~~P~~~~~v~~~~g~~~v~GyA~sGGGr~I~rVEVS~DgG~tW~~A~L~~pe~~~~~~~~~~~~g~~~~~~  318 (424)
T 2bii_A          239 YDLNLQTIICKPENQQVIKISEDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGLVNVC  318 (424)
T ss_dssp             CBCCCEEEEEESCTTCEEECCSCEEEEEEEEECSTTCCEEEEEEESSTTSSCEECEEECTHHHHHHTCSEEETTEEECGG
T ss_pred             cccccceEEecCCCCCEeecCCCeEEEEEEEEcCCCCCEEEEEEEcCCCCCceEeEccCcCCcccccccccccccccccc
Confidence            99999999999999999976457999999999998999999999999999999999997643210       1       


Q ss_pred             --CCceeEEEeEEEeecCC--CCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcceeeccCCCCCC
Q psy11686        353 --TRHWGWTLWRATIPVDP--KTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDK  428 (939)
Q Consensus       353 --~~~~~W~~W~~~~~~~~--~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l~Cagn~r~  428 (939)
                        ...|+|++|+++|++++  +.                                                         
T Consensus       319 ~~~~~~~W~~W~~~~~~~~~~g~---------------------------------------------------------  341 (424)
T 2bii_A          319 DRMSCLCWCFWKLKVPLSELARS---------------------------------------------------------  341 (424)
T ss_dssp             GCCCCCSCEEEEEEEEHHHHHTC---------------------------------------------------------
T ss_pred             cccccceeeeeEEEEecccCCCc---------------------------------------------------------
Confidence              25799999999998642  11                                                         


Q ss_pred             CccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCCCCCCCCccee
Q psy11686        429 ENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGV  508 (939)
Q Consensus       429 ~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~~~~g~p~R~v  508 (939)
                                                                          ..+++||+|..||.||..+  -||+|++
T Consensus       342 ----------------------------------------------------~~I~vRA~D~~gn~QP~~~--~WN~~G~  367 (424)
T 2bii_A          342 ----------------------------------------------------KDILIRGMDERMMVQPRTM--YWNVTSM  367 (424)
T ss_dssp             ----------------------------------------------------SEEEEEEEETTCCBCCSSC--CCCTTCC
T ss_pred             ----------------------------------------------------eEEEEEEEcCCCCcCCCCc--ccccccc
Confidence                                                                2345899999999999864  6999999


Q ss_pred             ecceeeEEEEEEecCCcCceeecCCCCCCCCCCc
Q psy11686        509 LSNAYHRVRVEIWSKAVDSSYNTQPENGHPSGYQ  542 (939)
Q Consensus       509 vp~~~~~~~i~~~~~~~~~~y~~~~~~~~~~~~~  542 (939)
                      +.|.|++++|++........+.+.|+  .+.+||
T Consensus       368 ~nN~~~rv~v~~~~~~~~f~hp~~~~--~~~gwm  399 (424)
T 2bii_A          368 LNNWWYRVAIIREGESLRFEHPVVAN--KPGGWM  399 (424)
T ss_dssp             SCCSCEEEEEEEETTEEEEECSCBTT--BCCSHH
T ss_pred             ccCcEEEEEEEecCCEEEEeCCCCCC--CCCcCc
Confidence            99999999999866644666677777  456776

>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A*

Probab=100.00  E-value=1.2e-56  Score=503.55  Aligned_cols=245  Identities=22%  Similarity=0.282  Sum_probs=209.3

Q ss_pred             CCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee-------------EEEEEeecccCCcceeeeHHHHH
Q psy11686        113 PYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS-------------STITLDQAIVSKQLSSFKHSDEK  179 (939)
Q Consensus       113 ~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~-------------w~l~v~~G~v~~~p~~~t~~dl~  179 (939)
                      ++...|.. +.|+..+.+|||+|||++.|.+++|||+++||+||             |+|+|+ |+|++ |++||++||+
T Consensus        14 ~~~~~p~~-~~li~~~~~p~n~e~p~~~l~~~~iTP~~~~yvr~h~~~vP~~id~~~w~L~V~-G~V~~-p~~ltl~dL~   90 (373)
T 2blf_A           14 PLVMYPGK-RPLIGLTARPPQLETPFSVFDEGLITPNDAFFVRYHLAGIPLEIDPDAFRLEIK-GKVGT-PLSLSLQDLK   90 (373)
T ss_dssp             EEECCTTC-CCEEEEETTTTEEECCGGGGGSCSSCCGGGCCBCCSCSBCCCEECTTTCCEEEE-ESBSS-CEEECHHHHH
T ss_pred             ccccCCCC-CCcEEecCCCCcCCCChHHhCccccCChhheEEEecCCCCccccCCCCeEEEEE-eEcCC-ceEEeHHHHh
Confidence            45556664 44555569999999999999888999999999996             999999 99998 9999999999


Q ss_pred             Hhccc-------eeccccC-------------------ccCccccHHHHHhCCCCC-----------CC--------C--
Q psy11686        180 LKLVK-------VMAGNIS-------------------QEDSKLAAKDIASDPYVM-----------EP--------V--  212 (939)
Q Consensus       180 ~~~p~-------~C~gn~~-------------------~~~~~~~~~~vL~~~g~~-----------d~--------~--  212 (939)
                      ++||+       +|+||+|                   ..|+|++++|||+.||++           |.        |  
T Consensus        91 ~~lp~~~~~~~l~C~~N~R~~~~~~~~G~~W~~gai~~~~W~GV~L~dlL~~ag~~~~a~~V~~~~~D~~~~~~~~~Y~~  170 (373)
T 2blf_A           91 NDFPASEVVAVNQCSGNSRGFVEPRVGGGQLANGAMGNARWRGVPLKAVLEKAGVQAGAKQVTFGGLDGPVIPETPDFVK  170 (373)
T ss_dssp             HHSCCEEEEEEEECTTTTGGGCSSCCSSCCCCSCSEEEEEEEEEEHHHHHHHHCBCTTCCEEEEEESCBCSSTTSCCCEE
T ss_pred             ccCCCeEEEEEEEeccCccccccccccCCCccccceeeeEEEEEEHHHHHHhcCCCCCCcEEEEEecCCCCCCCCCCEEE
Confidence            44999       9999864                   356788899999999975           22        4  


Q ss_pred             CcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCCcc-
Q psy11686        213 RSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVD-  279 (939)
Q Consensus       213 ~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~~~-  279 (939)
                      ||||++|+++     |+|||||||++ ||||||||||      ||||++|+|++++++||||++||++..........+ 
T Consensus       171 sipl~~a~~~~~lLA~~mNGepL~~~hG~PlRlVvPg~~G~~svKwl~~I~v~~~~~~~~w~~~~Y~~p~~~~~~~~~~~  250 (373)
T 2blf_A          171 ALSIDHATDGEVMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRIPDNACACTEPGK  250 (373)
T ss_dssp             EEEHHHHTSSCSEEEEEETTEECCGGGTTTCEEECTTBCGGGSCBSEEEEEEESSCCCCHHHHTSSEEESSTTCCCSTTC
T ss_pred             EEEHHHhcCCCEEEEEeeCCeECCcccCCceEEEecCccccccceeccEEEEEecCCCCcceecccccCCccccccCCCC
Confidence            5999999996     99999999999 9999999999      999999999999999999999999843211111112 


Q ss_pred             -CCCCCCcccccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeE
Q psy11686        280 -FAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGW  358 (939)
Q Consensus       280 -~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W  358 (939)
                       +.+..+|++|++||+|+.|.++++++.  |+++|+||||+| |++|+|||||+|||+||+.|+|.++.      ++|||
T Consensus       251 ~~~~~~~i~~~~v~S~I~~P~~~~~v~~--g~~~v~G~A~~G-g~~I~rVEVS~DgG~tW~~A~l~~~~------~~~~W  321 (373)
T 2blf_A          251 APTATIPINRFDVRSFITNVENGASVKA--GEVPLRGIAFDG-GYGITQVSVSADAGKSWTNATLDPGL------GKYSF  321 (373)
T ss_dssp             CCSSEEECCBCCCEEEECSCCTTEEECS--EEEEEEEEEECS-SSCEEEEEEESSTTSSCEECEECCCS------CTTSC
T ss_pred             cccccccceecccCEEEEecCCCCEecc--ceEEEEEEEEcC-CCCEEEEEEEeCCCCCceEeEeCCCC------CCCeE
Confidence             345578999999999999999999984  699999999965 77899999999999999999999654      57999


Q ss_pred             EEeEEEeecCC
Q psy11686        359 TLWRATIPVDP  369 (939)
Q Consensus       359 ~~W~~~~~~~~  369 (939)
                      ++|+++|+..+
T Consensus       322 ~~W~~~~~~~~  332 (373)
T 2blf_A          322 RGWKAVLPLTK  332 (373)
T ss_dssp             EEEEEEEEECS
T ss_pred             EEEEEEEEcCC
Confidence            99999997643

>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}

Probab=100.00  E-value=5.2e-50  Score=450.64  Aligned_cols=258  Identities=20%  Similarity=0.196  Sum_probs=221.5

Q ss_pred             CCccCCCCcccccccc-CCCCCCCCCCCccccccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHH
Q psy11686        113 PYVMEPVRSPLLKATS-LKPYNAEPPPSMLVENFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKL  180 (939)
Q Consensus       113 ~~~~dP~r~p~l~v~~-~~P~n~e~p~~~l~~~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~  180 (939)
                      ++.....|........ ..+.++|+|+..| .++|||+++||+||           |+|+|+ |+|++ |++||++||+ 
T Consensus        32 ~~~~~~~r~~~~~~~~~~~~~~~~~p~~~l-~~~iTP~~~~y~r~h~~vP~id~~~w~L~V~-G~V~~-p~~ltl~dL~-  107 (390)
T 2xts_A           32 HFESHVKRQYVEWLTESPVSSINFTPIHAL-EGTITPQGCAFERHHSGAIELSKQDYRLMIN-GLVEK-PLVFTFEDLL-  107 (390)
T ss_dssp             GGGTTSSCBCCGGGCSBTTBEECBCCTTTC-CSSCCCGGGSCCEESSCBCCCCTTTCCEEEE-ESBSS-CEEECHHHHT-
T ss_pred             cccccceeeccCccccccccccccCChhhc-cCCcCCCCceEEecCCCCCccCCCCeEEEEE-eEcCC-CeEEcHHHHh-
Confidence            3444444544322222 6778889999999 58999999999999           999999 99998 9999999999 


Q ss_pred             hccc-------eeccccC--------------------ccCccccHHHHHhCCCCC-----------CC----CCcchhh
Q psy11686        181 KLVK-------VMAGNIS--------------------QEDSKLAAKDIASDPYVM-----------EP----VRSPLLK  218 (939)
Q Consensus       181 ~~p~-------~C~gn~~--------------------~~~~~~~~~~vL~~~g~~-----------d~----~~ipl~~  218 (939)
                      +||+       +|+||++                    ..|+|++++|||+.||++           |+    .+|||++
T Consensus       108 ~lp~~~~~~~l~C~gn~r~~w~~~~~~g~~w~~g~i~~~~W~GV~L~dlL~~ag~~~~a~~V~~~~~Dg~~y~~sipl~~  187 (390)
T 2xts_A          108 RFPRTTTTAFCECAANGGMEWGGAQLEGCQYTQGMIHNMEYVGVPLSVLLAEAGVKPEGKWLYAEGADASSNGRSFPMEK  187 (390)
T ss_dssp             TSCCEEEEEEEECTTTTGGGTTSCCCSSHHHHHCSEEEEEEEEEEHHHHHHHHCBCTTCCEEEEEESSTTCCCEEEEHHH
T ss_pred             cCCCEEEEEEEEecCCcccccccccccccccccCceeeeEEEEEEHHHHHHhcCCCCCceEEEEEecCCCeEEEEEEHHH
Confidence            8999       9999976                    456788899999999975           23    3599999


Q ss_pred             hcCC----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCCccCCCCCCcc
Q psy11686        219 ATSL----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQ  287 (939)
Q Consensus       219 a~~~----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~~~~~~~~~i~  287 (939)
                      ||++    |+|||||||++ ||||||||||      ||||++|+|+++++++|||+.+|+.+.+....       ..+++
T Consensus       188 a~~~~lLA~~mNGepL~~~hG~PlRLVvPg~~G~~svKwl~~I~v~~~~~~~~~~~~~y~~~~~~~~~-------~~~~~  260 (390)
T 2xts_A          188 VMDDVMLAFFANGEALRKEHGYPARLVVPGWEGNMWVKWVRRLGIYDKAVESREETSKYTDLMPDGRA-------RKWTW  260 (390)
T ss_dssp             HHHHCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCBSEEEEEEESSCCCCGGGTTSSCEECTTSCE-------EECCC
T ss_pred             HhcCcEEEEeECCeECCccCCCceEEEecCccCcccceeccEEEEEecCCCCchhhccccccCCCCCc-------cccce
Confidence            9976    99999999999 9999999999      99999999999999999999999987654321       23578


Q ss_pred             cccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeEEEeEEEeec
Q psy11686        288 ELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPV  367 (939)
Q Consensus       288 ~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W~~W~~~~~~  367 (939)
                      +|+|||+|+.|.+++.|+.+.+.++|+||||+|+| +|+|||||+|||+||+.|+|.++.      .+++|++|++.|..
T Consensus       261 ~~~vnS~I~~P~~~~~i~~~~g~~~v~G~A~~G~g-~I~rVevS~DgG~tW~~A~L~~~~------~~~aw~~w~~~~~~  333 (390)
T 2xts_A          261 VMDAKSVITSPSPQVPIRHGKGPLVISGLAWSGNG-RITRVDVSLDGGKNWTTARITGQA------LPKALTRFHLDIDW  333 (390)
T ss_dssp             BCCCEEEEEESBTTBCCCSCSEEEEEEEEEECTTS-CEEEEEEESBTTSSCEECEEESCC------CTTSCEEEEEEEEE
T ss_pred             eecCceeeecCCCCCEeecCCCcEEEEEEEEcCCC-cEEEEEEecCCCCcEEEeeccCCC------CCCceEEEEEEEEc
Confidence            99999999999999998643478999999999977 599999999999999999999876      45899999999988


Q ss_pred             CCCCce--eeeeecccCCCCCCc
Q psy11686        368 DPKTKE--VSIMDMLMGKKPHDI  388 (939)
Q Consensus       368 ~~~~~~--vra~d~~~~~~p~~~  388 (939)
                      ..+.++  |||+|..+++||.+.
T Consensus       334 ~~g~~~i~vRA~D~~gn~QP~~~  356 (390)
T 2xts_A          334 DGSEMLLQSRAVDETGYVQPTKD  356 (390)
T ss_dssp             CSCCEEEEEEEEETTCCBCCCHH
T ss_pred             CCCccEEEEEEEcCCCCcCCCcc
Confidence            766654  999999999999753

>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*

Probab=100.00  E-value=3.4e-37  Score=353.67  Aligned_cols=250  Identities=19%  Similarity=0.140  Sum_probs=193.5

Q ss_pred             ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeE-EeecccCeEEE--------E
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQ-LRIAGEGTVTA--------K  612 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~-~~~~~~g~~~~--------~  612 (939)
                      -++++.||++ +++|+.|+||++++.++                ++.+.+.  ..+|.. +.+..|||+++        +
T Consensus        38 ylVGG~VRD~LLg~~~~D~Di~t~~~~~----------------~~~~~~~--~~~~~~~~~g~~~gt~~v~~~~g~~~e   99 (441)
T 3h38_A           38 YVVGGFVRDLLLGIKNLDIDIVVEGNAL----------------EFAEYAK--RFLPGKLVKHDKFMTASLFLKGGLRID   99 (441)
T ss_dssp             EEETHHHHHHHHTCCCCCEEEEESSCHH----------------HHHHHHH--TTSCEEEECCSSTTEEEEEETTSCEEE
T ss_pred             EEEcHHHHHHHCCCCCCCeeEEeCCCHH----------------HHHHHHH--HHcCCEeccCCcCcEEEEEEeCCeEEE
Confidence            4678889997 79999999999998887                3322222  123433 45778888754        5


Q ss_pred             EEeeccCCCC---------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhh
Q psy11686        613 VLSYRNRREK---------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLR  683 (939)
Q Consensus       613 v~tfr~~~~~---------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlR  683 (939)
                      |+|||.+...         .+++++||.||||||||||++++...+|+|+|||||++||++|+||+++++  +|.|||+|
T Consensus       100 v~t~R~e~~~~~~~~p~V~~~~l~eDl~RRDFTINAla~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~--~F~eDplR  177 (441)
T 3h38_A          100 IATARLEYYESPAKLPDVEMSTIKKDLYRRDFTINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHTL--SFVDDPTR  177 (441)
T ss_dssp             EEECCEECCSSSSSCCEESCCCHHHHHHTSSBGGGSCEEECSGGGTTEEECSSSHHHHHHTTEECBSSTT--HHHHCTTH
T ss_pred             EecccccccCCCCCCCccCCCCHHHHHHhccchhhhhhcccCCCCCCeEeCCCCCHHHHhCCEEEECCCC--ChhhCHHH
Confidence            8899975321         258999999999999999999855456999999999999999999999986  89999999


Q ss_pred             HHHHHHHHHHhCCCCCCChHHHHHHHHHhh--hhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--ccccccchh
Q psy11686        684 ILRYFRFFARICNNPNNHKEEVLSAIKNNL--DGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLKATT  759 (939)
Q Consensus       684 ilRa~RFaarlgf~~~~i~~~t~~ai~~~~--~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~~~~  759 (939)
                      ||||+||++||||.   |+++|.++|++++  ..|.++|+|||+.||.|||.++++...+..|.+.+++  +||++....
T Consensus       178 iLRa~Rfaa~lgf~---i~~~t~~~i~~~~~~~~l~~is~eRi~~El~kll~~~~~~~~l~~l~~~glL~~i~Pel~~~~  254 (441)
T 3h38_A          178 ILRAIRFEQRFDFR---IEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTYYTP  254 (441)
T ss_dssp             HHHHHHHHHHTTCE---ECHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTHHHHHSTTCCCCH
T ss_pred             HHHHHHHHHHhCCC---CChHHHHHHHHHHhhchhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhCcccccch
Confidence            99999999999997   9999999999986  5899999999999999999999887777666655554  799998654


Q ss_pred             h-H---HHHHHHHHHHhhhhhhhcccceeec----cCCCChhHHHHHHHHHhCCCCCchhhHHHHhh
Q psy11686        760 M-R---EYIVELMKYKEKSELIKDFHKWRLP----TFPMNGNIIRQFFARICNNPNNHKEEVLSAIK  818 (939)
Q Consensus       760 ~-~---~~~~~l~~~~~~~~~~~~~~~w~~~----~~~l~~~~l~~f~~RL~l~~~~~r~~ll~ai~  818 (939)
                      . .   ..+...+.|......  +...|.++    +..++.+...+++.||.++. ...+.+.....
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~~~~~~~~~~~~~rl~ls~-~~~~~l~~l~~  318 (441)
T 3h38_A          255 SMDEKMENLFRNIPWVEENFG--EVDRFYAVLHVFLEFYDDESWKEVRDRYSLRR-NLINEIRHVEK  318 (441)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHTTTCCHHHHHHHHHHTTCCT-THHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhcc--chhhHHHHHHHHhCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence            2 2   233444555543322  14567655    45567788999999999999 66666654433

>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4

Probab=100.00  E-value=6e-35  Score=336.84  Aligned_cols=242  Identities=30%  Similarity=0.389  Sum_probs=185.3

Q ss_pred             ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEE---eecccCeEEE-------
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQL---RIAGEGTVTA-------  611 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~---~~~~~g~~~~-------  611 (939)
                      -++++.||++ |++++.|+|+++++.|+                ++.++|   ...|++.   .+..||++++       
T Consensus        74 ylVGG~VRD~LLg~~~~D~Di~~~~~p~----------------~~~~~~---~~~g~~~~~~~g~~~gt~~v~~~~~~~  134 (448)
T 1ou5_A           74 RIAGGAVRDLLNGVKPQDIDFATTATPT----------------QMKEMF---QSAGIRMINNRGEKHGTITARLHEENF  134 (448)
T ss_dssp             EEESTTTHHHHHTSCCSSCEEEESSCHH----------------HHHHHH---TTTTCCBCCCCCTTCCCEEECTTTTCE
T ss_pred             EEeCHHHHHHHcCCCCCCEEEEeCCCHH----------------HHHHHH---HHcCCccccCcCcccceEEEEECCEEE
Confidence            4677889987 79999999999998888                555544   4445442   4677888764       


Q ss_pred             EEEeeccCCC---------CCCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchh
Q psy11686        612 KVLSYRNRRE---------KEDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYL  682 (939)
Q Consensus       612 ~v~tfr~~~~---------~~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPl  682 (939)
                      +|+|||.+..         +.+++++||.||||||||||+++    +|+|+|||||++||++|+||+|++|.++|.|||+
T Consensus       135 ev~t~R~~~~~~~r~~~v~~~~~l~eDl~RRDFTINAla~~~----~g~l~D~~gG~~DL~~~~IR~v~d~~~rF~EDPL  210 (448)
T 1ou5_A          135 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGF----DGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYL  210 (448)
T ss_dssp             EEEECCS------------SSCCSSCCGGGSSBGGGSCEECS----SCBEECSSSHHHHTTTTCCCBSSTTTTTSSSCTT
T ss_pred             EEEeecccccccCCCCccccCccHHHHHHHcCCChhheeECC----CCCEeCCCCCHHHHhCCeEEecCChHHhhhhCHH
Confidence            6999997532         23479999999999999999996    7999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHh--CC-CCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--c-ccccc
Q psy11686        683 RILRYFRFFARI--CN-NPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--L-FSKLK  756 (939)
Q Consensus       683 RilRa~RFaarl--gf-~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--l-fp~l~  756 (939)
                      |||||+||++||  || .   |+++|+++|++++..|..+|.|||+.||.|||.++++...+..|.+.+++  + ||++.
T Consensus       211 RiLRa~RFaarl~~gf~~---I~~~T~~ai~~~~~~L~~is~ERi~~El~kiL~~~~~~~~l~~L~~~GlL~~i~lPe~~  287 (448)
T 1ou5_A          211 RILRYFRFYGRIVDKPGD---HDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANA  287 (448)
T ss_dssp             HHHHHHHHHHHSCSSSSC---CCHHHHHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGGTCCCCS
T ss_pred             HHHHHHHHHHHcCcCCCC---cCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHCCCceEecCcchh
Confidence            999999999999  96 6   99999999999999999999999999999999999887777777776666  7 89987


Q ss_pred             chhhHHHHHHHHHHHhhhhhhhcccceeeccCCCChhHHHHHHHHHhCCCCCchhhHHHHh
Q psy11686        757 ATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAI  817 (939)
Q Consensus       757 ~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~f~~RL~l~~~~~r~~ll~ai  817 (939)
                      .-..   +..++.+.... ....+..|..-+.  +-....+++.||.++. ...+.+...+
T Consensus       288 ~i~~---~~~~l~~~~~~-~~~~~l~lAaLlh--Di~ka~~i~~rLkls~-~~~~~v~~Lv  341 (448)
T 1ou5_A          288 SLEE---FDKVSKNVDGF-SPKPVTLLASLFK--VQDDVTKLDLRLKIAK-EEKNLGLFIV  341 (448)
T ss_dssp             CCHH---HHHHHHHHTTS-CCCHHHHHGGGCC--STTTTHHHHHHHCCCT-THHHHHHHHT
T ss_pred             hHHH---HHHHHHHHHhc-CCCHHHHHHHHhc--ChHHHHHHHHHcCCCH-HHHHHHHHHH
Confidence            5322   22333322211 1112222333232  2345788999999998 5555444433

>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4

Probab=100.00  E-value=3.7e-35  Score=334.51  Aligned_cols=250  Identities=16%  Similarity=0.112  Sum_probs=189.0

Q ss_pred             ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-------EEEE
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-------AKVL  614 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-------~~v~  614 (939)
                      -++++.||++ +++|+.|+|+++++.+.        +|       .+++.+.|..  ....+..|||++       ++|+
T Consensus        14 y~VGG~VRD~llg~~~~D~Di~~~~~~~--------~~-------~~~~~~~~~~--~~~~~~~~~t~~v~~~~~~~e~~   76 (390)
T 1vfg_A           14 YIVGGVVRDILLGKEVWDVDFVVEGNAI--------EL-------AKELARRHGV--NVHPFPEFGTAHLKIGKLKLEFA   76 (390)
T ss_dssp             EEETHHHHHHHTTCCCSEEEEEESSCHH--------HH-------HHHHHHHHTC--CCEEETTTTEEEEEETTEEEEEE
T ss_pred             EEEChHHHHHHcCCCCCCEEEEEeCChH--------HH-------HHHHHHHcCC--ceeecCCCcEEEEEECCEEEEEe
Confidence            4677889987 79999999999998765        21       1233333311  124577888875       4699


Q ss_pred             eeccCCCC---------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhhHH
Q psy11686        615 SYRNRREK---------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLRIL  685 (939)
Q Consensus       615 tfr~~~~~---------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlRil  685 (939)
                      |||.+..+         .+++++||.||||||||||++++...+|+|+|||||++||++|+||++++.  +|.|||+|||
T Consensus        77 ~~R~e~~~~~~~~p~v~~~~l~~Dl~RRDfTiNAla~~~~~~~~g~l~D~~~G~~DL~~~~ir~v~~~--~F~eDPlRiL  154 (390)
T 1vfg_A           77 TARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDKVIRVLHPV--SFIEDPVRIL  154 (390)
T ss_dssp             ECCSCC---------CCCCCHHHHHHTSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTTEECBSSTT--HHHHCTTHHH
T ss_pred             ccCcccCCCCCCCCccCCCCHHHHHhhCCCchhheeecccCCCCCeEEeCCCCHHHHhCCeeEeCCcc--chhhCHHHHH
Confidence            99986532         248999999999999999999754446999999999999999999999974  9999999999


Q ss_pred             HHHHHHHHhCCCCCCChHHHHHHHHHhhh--hhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--ccccccchh-h
Q psy11686        686 RYFRFFARICNNPNNHKEEVLSAIKNNLD--GLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--LFSKLKATT-M  760 (939)
Q Consensus       686 Ra~RFaarlgf~~~~i~~~t~~ai~~~~~--~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--lfp~l~~~~-~  760 (939)
                      ||+||++||||.   |+++|+++|++++.  .|..+|.|||+.||.|||.++++...+..|.+.+.+  +||++.... .
T Consensus       155 Ra~Rfaa~~gf~---i~~~T~~~i~~~~~~~~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~~lPe~~~~~~~  231 (390)
T 1vfg_A          155 RALRFAGRLNFK---LSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWNEKV  231 (390)
T ss_dssp             HHHHHHHHHTCE---ECHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHHSTTCCCCHHH
T ss_pred             HHHHHHHHcCCC---CCHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhhhhhhhH
Confidence            999999999997   99999999999965  799999999999999999999877777766666655  799987543 1


Q ss_pred             ---HHHHHHHHHHHhhhhhhhcccceeec----cCCCChhHHHHHHHHHhCCCCCchhhHHH
Q psy11686        761 ---REYIVELMKYKEKSELIKDFHKWRLP----TFPMNGNIIRQFFARICNNPNNHKEEVLS  815 (939)
Q Consensus       761 ---~~~~~~l~~~~~~~~~~~~~~~w~~~----~~~l~~~~l~~f~~RL~l~~~~~r~~ll~  815 (939)
                         ...+...+.|+...........|.++    ++.++.....++|.|+.++. ...+.+..
T Consensus       232 ~q~l~~~~~~~~~~~~~~~~~~~~~~~l~laaLlhdi~~~~a~~~~~rL~ls~-~~~~~v~~  292 (390)
T 1vfg_A          232 LQKLYALRKVVDWHALEFSEERIDYGWLYLLILISNLDYERGKHFLEEMSAPS-WVRETYKF  292 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHCSCCSSTTHHHHHHTTCCH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHccCCHHHHHHHHHHcCCCH-HHHHHHHH
Confidence               22333344454432222223445555    45666677899999999998 44444433

>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*

Probab=100.00  E-value=2.4e-35  Score=336.70  Aligned_cols=243  Identities=21%  Similarity=0.247  Sum_probs=184.8

Q ss_pred             ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEEE-------EEE
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVTA-------KVL  614 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~~-------~v~  614 (939)
                      -++++.||++ +++++.|+||++++.|+                ++.++++.     ...+|..||++++       +|+
T Consensus        23 y~VGG~VRD~lLg~~~~D~Di~~~~~~~----------------~~~~~~~~-----~~~~g~~~gt~~v~~~~~~~ev~   81 (404)
T 1miw_A           23 YFVGGAVRDLLLGRPIGDVDIATSALPE----------------DVMAIFPK-----TIDVGSKHGTVVVVHKGKAYEVT   81 (404)
T ss_dssp             EEESHHHHHHHHTCCCCCCEEEESSCHH----------------HHHHHCSS-----EEEEEGGGTEEEEEETTEEEEEE
T ss_pred             EEECHHHHHHHcCCCCCCEEEEeCCCHH----------------HHHHHhhh-----hcccCcCCCeEEEEECCeEEEEe
Confidence            4677889987 79999999999998888                55555542     2345777888764       689


Q ss_pred             eeccCCCC-----------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCccccchhchhh
Q psy11686        615 SYRNRREK-----------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDPVSRIQEDYLR  683 (939)
Q Consensus       615 tfr~~~~~-----------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~~~~f~EDPlR  683 (939)
                      |||.+..+           .+++++||.||||||||||++.    +|+|+|||||++||++|+||++++|..+|.|||+|
T Consensus        82 t~R~e~~~~~~~~p~~v~~~~~l~~Dl~RRDfTiNAla~~~----~g~l~D~~~G~~Dl~~~~ir~~~~p~~~f~eDPlR  157 (404)
T 1miw_A           82 TFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAMDE----YGTIIDPFGGREAIRRRIIRTVGEAEKRFREDALR  157 (404)
T ss_dssp             ECEECC---------CCEECSCHHHHHHTSSBSGGGCEECT----TCCEECTTCHHHHHHHTEECBSSCHHHHHHHCTHH
T ss_pred             eecccCCCCCCcCCcccccCCcHHHHHHhCCCCcchheeCC----CCCEeCCCCCHHHHhCCeeeecCChHhhHHhhHHH
Confidence            99986432           1589999999999999999985    89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc-ccccccchhhHH
Q psy11686        684 ILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL-LFSKLKATTMRE  762 (939)
Q Consensus       684 ilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l-lfp~l~~~~~~~  762 (939)
                      ||||+||++||||.   |+++|+++|++++..|..+|.|||+.||.|||.++++...+..|.+.+++ .+|++....  .
T Consensus       158 iLRa~Rfaa~lgf~---i~~~T~~ai~~~~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~~lPe~~~~~--~  232 (404)
T 1miw_A          158 MMRAVRFVSELGFA---LAPDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAYLPGLAGKE--K  232 (404)
T ss_dssp             HHHHHHHHHHHCCE---ECHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTSSTTCSSCH--H
T ss_pred             HHHHHHHHHHcCCC---CCHHHHHHHHHHHhhhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhCcchhhHH--H
Confidence            99999999999997   99999999999999999999999999999999999776777766665555 358776422  1


Q ss_pred             HHHHHHHHHhhhhhhhcccceeeccCCCChhHHHHHHHHHhCCCCCchhhHHHHh
Q psy11686        763 YIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLSAI  817 (939)
Q Consensus       763 ~~~~l~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~f~~RL~l~~~~~r~~ll~ai  817 (939)
                      .+..+.. .....+......|...++.++.....+++.||.++. ...+.+...+
T Consensus       233 ~~~~l~~-~~~~~~~~~~l~~aaLlhdigk~~a~~~l~rLkls~-~~~~~v~~Lv  285 (404)
T 1miw_A          233 QLRLAAA-YRWPWLAAREERWALLCHALGVQESRPFLRAWKLPN-KVVDEAGAIL  285 (404)
T ss_dssp             HHHHGGG-SCGGGCCSHHHHHHHHHHHHTCSCHHHHHHHTTCCH-HHHHHHHHHH
T ss_pred             HHHHHHH-HhccccCChHHHHHHHHHhCCHHHHHHHHHHcCCCH-HHHHHHHHHH
Confidence            1111100 000001112234555554444456788999999987 4444444433

>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A

Probab=100.00  E-value=2.8e-34  Score=328.28  Aligned_cols=187  Identities=25%  Similarity=0.317  Sum_probs=159.4

Q ss_pred             ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-------EEEE
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-------AKVL  614 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-------~~v~  614 (939)
                      -++++.||++ |+++++|+||+++++++                ++.++|+..     ..+|..||+++       ++|+
T Consensus        36 ylVGG~VRD~LLg~~~~D~Di~t~a~p~----------------~~~~~f~~~-----~~~g~~f~~~~v~~~~~~~ev~   94 (415)
T 3aql_A           36 WLVGGGVRDLLLGKKPKDFDVTTNATPE----------------QVRKLFRNC-----RLVGRRFRLAHVMFGPEIIEVA   94 (415)
T ss_dssp             EEETHHHHHHHHSSCCSCCEEEESSCHH----------------HHHHHTTTS-----CCCCCSSSCCEEESSSCEEEEE
T ss_pred             EEECHHHHHHHcCCCCCCEEEEcCCCHH----------------HHHHHhhhC-----eEecccCCEEEEEECCcEEEEe
Confidence            4678899997 79999999999999988                666665432     34566677654       5699


Q ss_pred             eeccCCCC---------------------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcCcccccCCc
Q psy11686        615 SYRNRREK---------------------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKGVCAFVGDP  673 (939)
Q Consensus       615 tfr~~~~~---------------------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~~  673 (939)
                      |||.+...                     ..++++||.||||||||||+++   .+|+|+|||||++||++|+||++++|
T Consensus        95 t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~tl~eDl~RRDFTINAla~~~---~~~~l~D~~gG~~DL~~~~Ir~v~~p  171 (415)
T 3aql_A           95 TFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSV---ADFTVRDYVGGMKDLKDGVIRLIGNP  171 (415)
T ss_dssp             ECCC-----------------------CCCCCHHHHHTTSSBSGGGCEEET---TTCCEECSSSHHHHHHHTEECBSSCH
T ss_pred             eecccccccccccccccccCCCcccccccCCCHHHHHhcCCccceeEEEeC---CCCeeeCCCCCHHHHhCCeEEecCCh
Confidence            99975321                     1478999999999999999997   57899999999999999999999999


Q ss_pred             cccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHHHhcCc--c
Q psy11686        674 VSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKMLYQNLL--L  751 (939)
Q Consensus       674 ~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~~~~~l--l  751 (939)
                      ..+|.|||+|||||+||+++|||.   |+++|+++|++++..|..+|.|||+.||.|||.++++...+..|.+.+++  +
T Consensus       172 ~~~F~eDPlRiLRa~Rfaarlgf~---i~~~T~~ai~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL~~~  248 (415)
T 3aql_A          172 ETRYREDPVRMLRAVRFAAKLGMR---ISPETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPL  248 (415)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHTTCE---ECHHHHTHHHHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCSTTT
T ss_pred             hhhhhhCHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHhhhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHh
Confidence            889999999999999999999997   99999999999999999999999999999999999877777776666665  7


Q ss_pred             ccccc
Q psy11686        752 FSKLK  756 (939)
Q Consensus       752 fp~l~  756 (939)
                      ||++.
T Consensus       249 lPe~~  253 (415)
T 3aql_A          249 FPTIT  253 (415)
T ss_dssp             CHHHH
T ss_pred             chhHH
Confidence            88764

>1xdy_A Bacterial sulfite oxidase; bioinformatics, sequence analysis, electron transfer, oxidoreductase, molybdoenzymes, molybdopterin; HET: MTE; 2.20A {Escherichia coli} SCOP: d.176.1.1 PDB: 1xdq_A*

Probab=99.96  E-value=1.4e-31  Score=289.79  Aligned_cols=202  Identities=10%  Similarity=0.008  Sum_probs=160.8

Q ss_pred             cccccCCCCCCCCCCCccccccccCCCCceEee-----------------EEEEEeecccCCcceeeeHHHHHHhccc--
Q psy11686        124 LKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS-----------------STITLDQAIVSKQLSSFKHSDEKLKLVK--  184 (939)
Q Consensus       124 l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~-----------------w~l~v~~G~v~~~p~~~t~~dl~~~~p~--  184 (939)
                      +.+.+..|||+|+|+.  ..++|||++.||+++                 |+|+|+ |+|++ |++||++||+++||+  
T Consensus        20 ~~~~~~~~~~~~~~~t--~~~~iT~~~~fY~~~~~~~~p~~~~~~id~~~w~L~V~-G~V~~-p~~ltl~dL~~~lP~~e   95 (298)
T 1xdy_A           20 LEFSKPAAWQNNLPLT--PADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKIS-GEVAK-PLTLDHDDLTRRFPLEE   95 (298)
T ss_dssp             CCCBCCGGGCCCCCCC--CHHHHTTSCCCGGGCSSTTHHHHHGGGSCCSSCEEEEE-ESBSS-CEEEEHHHHHHTSCCEE
T ss_pred             cccCCCCCCCCCCCCC--cHHHcCCCCCeEEecCCcCCcccccCcccCCCeEEEEe-eecCC-CeEeeHHHHhccCCCeE
Confidence            5677789999999877  446899999999884                 999999 99998 999999999944999  


Q ss_pred             -----eeccccC--ccCccccHHHHHhCCCCC-----------C-------------------CC--CcchhhhcCC---
Q psy11686        185 -----VMAGNIS--QEDSKLAAKDIASDPYVM-----------E-------------------PV--RSPLLKATSL---  222 (939)
Q Consensus       185 -----~C~gn~~--~~~~~~~~~~vL~~~g~~-----------d-------------------~~--~ipl~~a~~~---  222 (939)
                           +|+++|.  ..|+|+++++||+.||+.           |                   +|  +|||++|+++   
T Consensus        96 ~~~~l~Cv~~Ws~~~~W~GV~L~dLL~~aG~~~~A~~V~f~~~dd~~~~~G~~~~~~~~~~~~~Y~~slpl~~a~~~~~l  175 (298)
T 1xdy_A           96 RIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTL  175 (298)
T ss_dssp             EEEEEEETTTEEEEEEEEEEEHHHHHHHHCBCTTCCEEEEEECCCTTTCGGGTCTTTTTTCCSSCEEEEEHHHHHSTTCE
T ss_pred             EEEEEEecCCCcceeEEEeEEHHHHHHHcCCCCCCeEEEEEeCCChhcccCccccccccccCCCeEEEEEHHHhcCCCEE
Confidence                 8999987  689999999999999964           1                   12  4899999998   


Q ss_pred             --CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCCCccCCCCCCcccccceE
Q psy11686        223 --KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVIS  293 (939)
Q Consensus       223 --~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S  293 (939)
                        |+|||||||++ |||+||||||      ||||++|+|++++.+||||+++|+...-..+   .+..-..|.|+|...+
T Consensus       176 LA~~mNGepLp~~hG~PlRLVVPg~yG~ksvKwl~~Iev~~~~~~g~We~~~y~~yg~~~n---~n~~v~~P~w~q~~er  252 (298)
T 1xdy_A          176 MTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYAN---VNPYVDHPRWSQATER  252 (298)
T ss_dssp             EEEEETTEECCGGGTCSCEEECTTBCGGGSCCSEEEEEEESSCCCCHHHHHCTTTCCSSCB---CCTTSCBTTBCCSEEE
T ss_pred             EEEeeCCeECCcccCCceEEEeCCccccCcceeccEEEEEeCCCCCchhhcCccccCcccC---CCCCCCCCccccccee
Confidence              99999999999 9999999999      9999999999999999999999986542111   1112234577777777


Q ss_pred             EEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeE
Q psy11686        294 AICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWH  339 (939)
Q Consensus       294 ~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~  339 (939)
                      +|..  .+...     ..++.+++|.|.|..|.++..++|.++..-
T Consensus       253 ~i~~--g~~~~-----~~r~~t~~fnGy~~~va~ly~~md~~~~~~  291 (298)
T 1xdy_A          253 FIGS--GGILD-----VQRQPTLLFNGYADQVASLYRGLDLRENFL  291 (298)
T ss_dssp             ECCC--C-----------CEECCGGGGTHHHHHHHHTTCCC-----
T ss_pred             EEcC--CCcee-----ecccCceeecccHHHhhhhhhCcccchhhh
Confidence            7641  11011     235688999999989999999999987554

>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*

Probab=99.94  E-value=1.2e-27  Score=268.40  Aligned_cols=161  Identities=24%  Similarity=0.299  Sum_probs=133.6

Q ss_pred             ccHHHHh-hccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCC---CCCCc---CCCC
Q psy11686        403 FAEEKVR-TFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGIS---PDQSL---DSAD  475 (939)
Q Consensus       403 f~~~~l~-~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~---~~~~~---~g~d  475 (939)
                      |++++|+ +||+++++++++|+||+|++|..++++.|.+|+.|+|||++|+||+|+|||++||++   +++++   +|.|
T Consensus        71 ltl~dL~~~lp~~~~~~~l~C~gN~r~~~~~~~~v~G~~w~~gav~~~~W~GV~L~dlL~~ag~~~~~~~a~~V~~~~~D  150 (372)
T 2a9d_A           71 LSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHVCFEGLD  150 (372)
T ss_dssp             EEHHHHHHHSCCEEEEEEEECTTTTHHHHHTTSCCSSCCCCTTSEEEEEEEEEEHHHHHHHTTCCSCCSSCCEEEEEEEE
T ss_pred             EeHHHHHhhCCCeEEEEEEEecCCchhhccccccccccccccCceecceEEeEEHHHHHHhcCCCcCCCCcEEEEEEecC
Confidence            5666666 789999999999999999999989999999999999999999999999999999997   56666   7777


Q ss_pred             ------CceeeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCce-----ee
Q psy11686        476 ------VQHVHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDSS-----YN  530 (939)
Q Consensus       476 ------~~~~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~~-----y~  530 (939)
                            .-.+++++ ++|||+        +||||||+++||||||+||||++|      ..+|+|.++++...     |+
T Consensus       151 ~~~~~~~Y~~sipl-~~a~dp~~d~lLA~~mNGepL~~~hG~PlRlVvPg~~G~ksvKwl~~I~v~~~~~~~~w~~~~Y~  229 (372)
T 2a9d_A          151 ADPGGAPYGASIPY-GRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYK  229 (372)
T ss_dssp             ECTTCCEEEEEEEH-HHHHCGGGCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCCHHHHSSSC
T ss_pred             CCCCCCCeEEEeEH-HHHhCCCCCEEEEECCCCeECCcccCceEEEEecchhheeecceeeEEEEeccCCCCcceeccee
Confidence                  45588998 899972        899999999999999999999984      46999999988544     44


Q ss_pred             c-CCCCC----CCCCCccccccccceeecCCCCCCcccc
Q psy11686        531 T-QPENG----HPSGYQPRATLQGARLLTRPPNPHSVRF  564 (939)
Q Consensus       531 ~-~~~~~----~~~~~~~i~~m~V~SlI~~P~~D~dI~t  564 (939)
                      . .|...    .+....+|++|+|+|+|+.|..+..+..
T Consensus       230 ~~~p~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~  268 (372)
T 2a9d_A          230 GFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPP  268 (372)
T ss_dssp             CCCTTCCTTTCCGGGSCCCCBCCCEEEEEESCTTCEECS
T ss_pred             EcCCCCCccccccccCcccccccccEEEecCCCCCEecc
Confidence            3 22211    1123358999999999999998877743

>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A*

Probab=99.93  E-value=5.3e-27  Score=263.37  Aligned_cols=159  Identities=22%  Similarity=0.284  Sum_probs=132.5

Q ss_pred             ccHHHHhh-ccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCC--
Q psy11686        403 FAEEKVRT-FNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADV--  476 (939)
Q Consensus       403 f~~~~l~~-~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~--  476 (939)
                      |++++|++ ||+++++++++|+||+|++|  .+++.|.+|+.|+|||++|+||+|+|||++||+++++++   +|.|.  
T Consensus        84 ltl~dL~~~lp~~~~~~~l~C~~N~R~~~--~~~~~G~~W~~gai~~~~W~GV~L~dlL~~ag~~~~a~~V~~~~~D~~~  161 (373)
T 2blf_A           84 LSLQDLKNDFPASEVVAVNQCSGNSRGFV--EPRVGGGQLANGAMGNARWRGVPLKAVLEKAGVQAGAKQVTFGGLDGPV  161 (373)
T ss_dssp             ECHHHHHHHSCCEEEEEEEECTTTTGGGC--SSCCSSCCCCSCSEEEEEEEEEEHHHHHHHHCBCTTCCEEEEEESCBCS
T ss_pred             EeHHHHhccCCCeEEEEEEEeccCccccc--cccccCCCccccceeeeEEEEEEHHHHHHhcCCCCCCcEEEEEecCCCC
Confidence            55555666 78999999999999999986  589999999999999999999999999999999998887   77775  


Q ss_pred             ------ceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCc-----eeecCC
Q psy11686        477 ------QHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDS-----SYNTQP  533 (939)
Q Consensus       477 ------~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~-----~y~~~~  533 (939)
                            -.+++++ ++||++      +||||||+++||||+|+||||++|      ..+|+|.++++..     .|+.+.
T Consensus       162 ~~~~~~Y~~sipl-~~a~~~~~lLA~~mNGepL~~~hG~PlRlVvPg~~G~~svKwl~~I~v~~~~~~~~w~~~~Y~~p~  240 (373)
T 2blf_A          162 IPETPDFVKALSI-DHATDGEVMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRIPD  240 (373)
T ss_dssp             STTSCCCEEEEEH-HHHTSSCSEEEEEETTEECCGGGTTTCEEECTTBCGGGSCBSEEEEEEESSCCCCHHHHTSSEEES
T ss_pred             CCCCCCEEEEEEH-HHhcCCCEEEEEeeCCeECCcccCCceEEEecCccccccceeccEEEEEecCCCCcceecccccCC
Confidence                  4689998 999986      999999999999999999999874      4699999998844     455421


Q ss_pred             C-------CCCCCCCccccccccceeecCCCCCCcccc
Q psy11686        534 E-------NGHPSGYQPRATLQGARLLTRPPNPHSVRF  564 (939)
Q Consensus       534 ~-------~~~~~~~~~i~~m~V~SlI~~P~~D~dI~t  564 (939)
                      .       ...+....|+++|+|+|+|+.|..+..+..
T Consensus       241 ~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~  278 (373)
T 2blf_A          241 NACACTEPGKAPTATIPINRFDVRSFITNVENGASVKA  278 (373)
T ss_dssp             STTCCCSTTCCCSSEEECCBCCCEEEECSCCTTEEECS
T ss_pred             ccccccCCCCcccccccceecccCEEEEecCCCCEecc
Confidence            1       111223467999999999999998887753

>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1

Probab=99.93  E-value=3.4e-27  Score=266.58  Aligned_cols=160  Identities=21%  Similarity=0.320  Sum_probs=133.4

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCC-------c---C
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQS-------L---D  472 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~-------~---~  472 (939)
                      |++++|++||+++++++++|+||+|++|..++++.|.+|+.|||||++|+||+|+|||++||+++++.       +   +
T Consensus        79 ltl~dL~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aG~~~~a~~~~~~~~~V~f~  158 (393)
T 1ogp_A           79 LFIKDIRSLPKYNVTATLQCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFV  158 (393)
T ss_dssp             EEHHHHHTSCEEEEEEEEECTTTTHHHHHHHSCCCSCCCCSCCEEEEEEEEEEHHHHHHTTTCCTTCSCCTTCCCEEEEE
T ss_pred             eeHHHHhcCCCEEEEEEEEecCCccccccccccccCccccccceecceEEeeEHHHHHHhcCCCcccccccCcceEEEEE
Confidence            55666667899999999999999999998899999999999999999999999999999999998774       4   6


Q ss_pred             CCC--------CceeeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCc---
Q psy11686        473 SAD--------VQHVHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDS---  527 (939)
Q Consensus       473 g~d--------~~~~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~---  527 (939)
                      |.|        .-.+++++ ++|||+        +||||||+++||||||+||||++|      ..+|+|.+.++.+   
T Consensus       159 g~D~~~~~~~~~Y~~sipl-~~al~~~~~vlLA~~mNGepL~~~hG~PlRLVvPg~~G~rsvKwL~~I~v~~~~~~~~w~  237 (393)
T 1ogp_A          159 SVDRCKEENGGPYKASITL-SQATNPEADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFM  237 (393)
T ss_dssp             ESCCCGGGTTCCCEEEEEH-HHHHCGGGCCEEEEEETTEECCTTTTTTCEEECTTSCGGGSCCSEEEEEEESSCCCCHHH
T ss_pred             EcCcccccCCCCeEEEeEH-HHHhCCCCCEEEEeCcCCeECCcccCceEEEEeCccccceeeeeccEEEEEecCCCCcce
Confidence            777        34588998 899975        899999999999999999999874      4699999998854   


Q ss_pred             --eeecCCCCCC-----CCCCccccccccceeecCCCCCCccc
Q psy11686        528 --SYNTQPENGH-----PSGYQPRATLQGARLLTRPPNPHSVR  563 (939)
Q Consensus       528 --~y~~~~~~~~-----~~~~~~i~~m~V~SlI~~P~~D~dI~  563 (939)
                        .|+..|.+.+     .....++++|+|+|+|+.|..+..+.
T Consensus       238 ~~~Y~~~p~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~  280 (393)
T 1ogp_A          238 QKDYKMFPPSVNWDNINWSSRRPQMDFPVQSAICSVEDVQMVK  280 (393)
T ss_dssp             HSSSCCCCTTCCTTTCCGGGSCCCCSCCCEEEECSSCSEEEEC
T ss_pred             eccccccCCCCCcccccCCCCceeeeecccEEEeCCCCCCEec
Confidence              4443222211     12346899999999999999877764

>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*

Probab=99.93  E-value=8.8e-27  Score=268.83  Aligned_cols=161  Identities=24%  Similarity=0.299  Sum_probs=132.7

Q ss_pred             ccHHHHh-hccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCC---CCCCc---CCCC
Q psy11686        403 FAEEKVR-TFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGIS---PDQSL---DSAD  475 (939)
Q Consensus       403 f~~~~l~-~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~---~~~~~---~g~d  475 (939)
                      |++++|+ +||+++++++++|+||+|++|..++++.|.+|+.|+|||++|+||+|+|||++||++   +++++   +|.|
T Consensus       165 ltl~dL~~~lp~~~~~~~l~C~gN~r~~~~~~~~v~G~~W~~gai~~~~W~Gv~L~dlL~~ag~~~~~~~a~~V~~~~~D  244 (466)
T 1sox_A          165 LSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHVCFEGLD  244 (466)
T ss_dssp             EEHHHHHHHSCEEEEEEEEECTTTTHHHHHTTSCCSSCCCCTTSEEEEEEEEEEHHHHHHHTTCCSCCSSCCEEEEEEEE
T ss_pred             eeHHHHHhhCCCeEEEEEEEecCCCcccccccccccccccccCceecceEEEEEHHHHHHHcCCCCCCCCcEEEEEEecC
Confidence            4555555 678999999999999999999889999999999999999999999999999999997   56666   7777


Q ss_pred             ------CceeeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCce-----ee
Q psy11686        476 ------VQHVHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDSS-----YN  530 (939)
Q Consensus       476 ------~~~~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~~-----y~  530 (939)
                            .-.+++++ ++|||+        +||||||+++||||||+||||++|      ..+|+|.++++...     |+
T Consensus       245 ~~~~~~~Y~~sipl-~~a~~p~~~~lLA~~mNGepL~~~hG~PlRlvvPg~~G~~svKwl~~I~v~~~~~~~~w~~~~Y~  323 (466)
T 1sox_A          245 ADPGGAPYGASIPY-GRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYK  323 (466)
T ss_dssp             ECTTCCEEEEEEEH-HHHHCTTTCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCSHHHHSSSC
T ss_pred             CCCCCCCEEEEeEH-HHHhCCCCCEEEEECcCCeECChhcCceEEEEecchhheeeeeeccEEEEEeCCCCCcceecCce
Confidence                  45588998 899972        899999999999999999999984      46999999988544     44


Q ss_pred             c-CCCCC----CCCCCccccccccceeecCCCCCCcccc
Q psy11686        531 T-QPENG----HPSGYQPRATLQGARLLTRPPNPHSVRF  564 (939)
Q Consensus       531 ~-~~~~~----~~~~~~~i~~m~V~SlI~~P~~D~dI~t  564 (939)
                      . +|...    .+....+|++|+|+|+|+.|..+..+..
T Consensus       324 ~~~p~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~  362 (466)
T 1sox_A          324 GFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPP  362 (466)
T ss_dssp             CCCTTCCTTTCCGGGSCCCCBCCCEEEEEESCTTCEECS
T ss_pred             ecCCCCCccccccccccccccccccEEEecCCCCCEecc
Confidence            3 22211    1123358999999999999998877743

>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta}

Probab=99.92  E-value=2.9e-26  Score=262.47  Aligned_cols=162  Identities=20%  Similarity=0.253  Sum_probs=135.9

Q ss_pred             ccHHHHhh-ccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCC--
Q psy11686        403 FAEEKVRT-FNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADV--  476 (939)
Q Consensus       403 f~~~~l~~-~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~--  476 (939)
                      |++++|++ ||+++++++++|+||+|++|..++++.|.+|+.|+|||++|+||+|+|||++||+++++++   +|.|.  
T Consensus       109 ltl~dL~~~lp~~~~~~~l~CvgN~r~e~~~v~~~~G~~W~~~avs~a~WtGV~L~dlL~~aG~~~~A~~V~f~g~D~~~  188 (474)
T 2bih_A          109 IKLSDIMEQFDIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKARPSKRARFVWMEGADNPA  188 (474)
T ss_dssp             EEHHHHHHHSCCEEEEEEEECTTTTHHHHHHHSCCSSCCCCSCCEEEEEEEEEEHHHHHHHTCBCTTCCEEEEEESCCCT
T ss_pred             eeHHHHhhcCCCeEEEEEEEccCCccccccccccccccccccCceeeeEEEeEEHHHHHHhcCCCCCceEEEEEecCCCC
Confidence            55556665 7899999999999999999988999999999999999999999999999999999998887   78773  


Q ss_pred             ---ceeeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCceee-----cCCC
Q psy11686        477 ---QHVHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDSSYN-----TQPE  534 (939)
Q Consensus       477 ---~~~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~~y~-----~~~~  534 (939)
                         -.+++++ ++|||+        +||||||+++||||||+||||+++      ..+|+|.+.++...|+     +.|.
T Consensus       189 ~g~Y~~sipl-~~ald~~~dvlLA~~mNGepLp~~hG~PlRLVvPg~~G~rsvKWL~~Iev~~~~~~g~~~~~~yrv~p~  267 (474)
T 2bih_A          189 NGAYGTCIRL-SWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVLPT  267 (474)
T ss_dssp             TSSCEEEEEH-HHHTCTTTCCEEEEEETTEECCGGGTTTCEEECTTBBGGGSCSSEEEEEEESSCCCCHHHHHSSBCCCT
T ss_pred             CCCeEEEEEH-HHHhCcCCCEEEEEeeCCeECCccCCCeeEEEecccccCCccccCCEEEEEeccCCCceeeecccccCC
Confidence               3588998 899984        899999999999999999999984      4699999999866554     3222


Q ss_pred             CCC-----------CCCCccccccccceeecCCCCCCccccC
Q psy11686        535 NGH-----------PSGYQPRATLQGARLLTRPPNPHSVRFK  565 (939)
Q Consensus       535 ~~~-----------~~~~~~i~~m~V~SlI~~P~~D~dI~t~  565 (939)
                      ...           .....++++|+|+|+|+.|..+..+..+
T Consensus       268 ~~~~~~~~~~~~~W~~~~~~i~~~~vnS~I~~P~~~e~v~~~  309 (474)
T 2bih_A          268 MVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKIS  309 (474)
T ss_dssp             TCCHHHHHTCGGGGSCGGGBCCBCCCEEEEEESCTTCEEECC
T ss_pred             CCCccccccccCccccCcceeeccccceEEecCCCCCEeecC
Confidence            111           1123579999999999999988888543

>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum, nitrate assimilation, oxidoreductase; HET: MTV; 1.70A {Pichia angusta}

Probab=99.92  E-value=3e-26  Score=260.07  Aligned_cols=161  Identities=20%  Similarity=0.254  Sum_probs=135.5

Q ss_pred             ccHHHHhh-ccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCC--
Q psy11686        403 FAEEKVRT-FNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADV--  476 (939)
Q Consensus       403 f~~~~l~~-~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~--  476 (939)
                      |++++|++ ||+++++++++|+||+|++|..++++.|.+|+.|+|||++|+||+|+|||++||+++++++   +|.|.  
T Consensus        59 ltl~dL~~~lp~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~~ai~~a~WtGV~L~dlL~~ag~~~~a~~V~f~~~D~~~  138 (424)
T 2bii_A           59 IKLSDIMEQFDIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKARPSKRARFVWMEGADNPA  138 (424)
T ss_dssp             EEHHHHHHHSCCEEEEEEEECTTTTHHHHHHHSCCSSCCCCSCCEEEEEEEEEEHHHHHHHHCBCTTCCEEEEEESCCCT
T ss_pred             eeHHHHhccCCCeEEEEEEEecCCccccccccccccccccccCceEeeEEEeeEHHHHHHhcCCCCCceEEEEEecCCCC
Confidence            55666665 8899999999999999999988999999999999999999999999999999999998887   78773  


Q ss_pred             ---ceeeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCceee-----cCCC
Q psy11686        477 ---QHVHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDSSYN-----TQPE  534 (939)
Q Consensus       477 ---~~~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~~y~-----~~~~  534 (939)
                         -.+++++ ++|||+        +||||||+++||||||+||||+++      ..+|+|.+.++...|+     +.|.
T Consensus       139 ~g~Y~~sipl-~~a~d~~~dvlLA~~mNGepL~~~hG~PlRLVvPg~~G~rsvKwl~~I~v~~~~~~g~~~~~~yrv~p~  217 (424)
T 2bii_A          139 NGAYGTCIRL-SWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVLPT  217 (424)
T ss_dssp             TSSCEEEEEH-HHHTCTTTCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCCHHHHSSSBCCCT
T ss_pred             CCCEEEEEEH-HHHhCCCCCEEEEEeeCCcCCCcccCCceEEEecccccCCccccCcEEEEEeccCCCceeeecccccCC
Confidence               3589998 899984        899999999999999999999874      4699999999866554     3222


Q ss_pred             CCC-----------CCCCccccccccceeecCCCCCCcccc
Q psy11686        535 NGH-----------PSGYQPRATLQGARLLTRPPNPHSVRF  564 (939)
Q Consensus       535 ~~~-----------~~~~~~i~~m~V~SlI~~P~~D~dI~t  564 (939)
                      ...           .....++++|+|+|+|+.|..+..+..
T Consensus       218 ~~~~~~~~~~~~~w~~~~~~i~~l~v~S~I~~P~~~~~v~~  258 (424)
T 2bii_A          218 MVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKI  258 (424)
T ss_dssp             TCCHHHHHHCGGGGSCGGGBCCBCCCEEEEEESCTTCEEEC
T ss_pred             CCCccccccccCccccCcceecccccceEEecCCCCCEeec
Confidence            111           112357999999999999998888754

>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}

Probab=99.90  E-value=5e-25  Score=247.91  Aligned_cols=159  Identities=19%  Similarity=0.222  Sum_probs=129.7

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCCC--c
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSADV--Q  477 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d~--~  477 (939)
                      |++++|++||+++++++++|+||+|+++. .++++|.||++|+|||++|+||+|+|||++||+++++++   +|.|.  -
T Consensus       101 ltl~dL~~lp~~~~~~~l~C~gn~r~~w~-~~~~~g~~w~~g~i~~~~W~GV~L~dlL~~ag~~~~a~~V~~~~~Dg~~y  179 (390)
T 2xts_A          101 FTFEDLLRFPRTTTTAFCECAANGGMEWG-GAQLEGCQYTQGMIHNMEYVGVPLSVLLAEAGVKPEGKWLYAEGADASSN  179 (390)
T ss_dssp             ECHHHHTTSCCEEEEEEEECTTTTGGGTT-SCCCSSHHHHHCSEEEEEEEEEEHHHHHHHHCBCTTCCEEEEEESSTTCC
T ss_pred             EcHHHHhcCCCEEEEEEEEecCCcccccc-cccccccccccCceeeeEEEEEEHHHHHHhcCCCCCceEEEEEecCCCeE
Confidence            55556667799999999999999996654 456899999999999999999999999999999998888   78886  5


Q ss_pred             eeeEEeeeeeccc-----CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCceeecCCCCC---CCCCCcc
Q psy11686        478 HVHVEIWSKAVDS-----SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDSSYNTQPENG---HPSGYQP  543 (939)
Q Consensus       478 ~~~~~~~~~a~d~-----~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~~y~~~~~~~---~~~~~~~  543 (939)
                      .+++++ ++|||+     +||||||+++||||||+||||++|      ..+|+|.++++.+.++...+..   ......+
T Consensus       180 ~~sipl-~~a~~~~lLA~~mNGepL~~~hG~PlRLVvPg~~G~~svKwl~~I~v~~~~~~~~~~~~~y~~~~~~~~~~~~  258 (390)
T 2xts_A          180 GRSFPM-EKVMDDVMLAFFANGEALRKEHGYPARLVVPGWEGNMWVKWVRRLGIYDKAVESREETSKYTDLMPDGRARKW  258 (390)
T ss_dssp             CEEEEH-HHHHHHCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCBSEEEEEEESSCCCCGGGTTSSCEECTTSCEEEC
T ss_pred             EEEEEH-HHHhcCcEEEEeECCeECCccCCCceEEEecCccCcccceeccEEEEEecCCCCchhhccccccCCCCCcccc
Confidence            689998 899976     999999999999999999999874      4699999998855444321110   0011246


Q ss_pred             ccccccceeecCCCCCCccc
Q psy11686        544 RATLQGARLLTRPPNPHSVR  563 (939)
Q Consensus       544 i~~m~V~SlI~~P~~D~dI~  563 (939)
                      ++.|+|||+|+.|..+..|.
T Consensus       259 ~~~~~vnS~I~~P~~~~~i~  278 (390)
T 2xts_A          259 TWVMDAKSVITSPSPQVPIR  278 (390)
T ss_dssp             CCBCCCEEEEEESBTTBCCC
T ss_pred             ceeecCceeeecCCCCCEee
Confidence            78999999999998777663

>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4

Probab=99.80  E-value=8.9e-21  Score=218.80  Aligned_cols=96  Identities=45%  Similarity=0.682  Sum_probs=76.1

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceee-ee-----EEEEEcCeeeccccceecccccccCCCC
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMP-IP-----FTLLFSANFFRNLARITTLRIDVTTDGR  910 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~eitt~R~e~~~~~r  910 (939)
                      |+|||||||.|| ++++|+||+|++.|+++.++|...++ +.++ +|     +++.++|..|    ||+|+|.|.|+++|
T Consensus        74 ylVGG~VRD~LLg~~~~D~Di~~~~~p~~~~~~~~~~g~-~~~~~~g~~~gt~~v~~~~~~~----ev~t~R~~~~~~~r  148 (448)
T 1ou5_A           74 RIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGI-RMINNRGEKHGTITARLHEENF----EITTLRIDVTTDGR  148 (448)
T ss_dssp             EEESTTTHHHHHTSCCSSCEEEESSCHHHHHHHHTTTTC-CBCCCCCTTCCCEEECTTTTCE----EEEECCS-------
T ss_pred             EEeCHHHHHHHcCCCCCCEEEEeCCCHHHHHHHHHHcCC-ccccCcCcccceEEEEECCEEE----EEEeecccccccCC
Confidence            999999999999 89999999999999999999987663 5555 44     7778888777    99999999999999


Q ss_pred             ccccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        911 HAEVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       911 ~~~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      |+.|.|+.+|++||.||||||||||+|+
T Consensus       149 ~~~v~~~~~l~eDl~RRDFTINAla~~~  176 (448)
T 1ou5_A          149 HAEVEFTTDWQKDAERRDLTINSMFLGF  176 (448)
T ss_dssp             -----SSCCSSCCGGGSSBGGGSCEECS
T ss_pred             CCccccCccHHHHHHHcCCChhheeECC
Confidence            9999999999999999999999999986

>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1

Probab=99.79  E-value=3e-20  Score=164.97  Aligned_cols=79  Identities=46%  Similarity=0.932  Sum_probs=69.3

Q ss_pred             CCCCCcCHHHHhhccCCCCC-eEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccc
Q psy11686         18 STLPWYSLSDIQNHKDLKSS-IWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIG   95 (939)
Q Consensus        18 ~~~~~~t~~ev~~h~~~~~~-~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG   95 (939)
                      ++++.||++||++||+++ + |||+|+|+|||||+|++.|||| +.|+.++|+|++.|++....||+..|+++|++|+||
T Consensus         2 ~~~~~~t~~ev~~h~~~~-~~~wv~i~g~VYDvt~f~~~HPGG~~~il~~aG~Dt~~f~~~~~~~hs~~a~~~L~~~~IG   80 (82)
T 1mj4_A            2 ESTHIYTKEEVSSHTSPE-TGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVRELLAQYKIG   80 (82)
T ss_dssp             -CCCBCCCC-CTTCEETT-TEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSBSHHHHTTCGGGCSHHHHHHHHTTEEE
T ss_pred             CCCCccCHHHHHHhcCCC-CCeEEEECCEEEEchHHHHhCCCHhHHHHHHcCCChHHHHhhccccCcHHHHHHHHhCcce
Confidence            456899999999999874 6 9999999999999999999999 889999999988876544568899999999999999


Q ss_pred             cc
Q psy11686         96 NI   97 (939)
Q Consensus        96 ~l   97 (939)
                      .|
T Consensus        81 ~l   82 (82)
T 1mj4_A           81 EL   82 (82)
T ss_dssp             EC
T ss_pred             eC
Confidence            76

>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*

Probab=99.79  E-value=8.3e-20  Score=165.36  Aligned_cols=84  Identities=30%  Similarity=0.650  Sum_probs=75.6

Q ss_pred             CCCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCcc
Q psy11686         16 PISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRI   94 (939)
Q Consensus        16 ~~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~V   94 (939)
                      +.+.++.||++||++||+. ++|||+|+|+|||||+|+..|||| ..|+.++|+|+|..|.  ..+||..|+++|++|+|
T Consensus         5 ~~~~~~~~t~~Ev~~h~~~-~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~--~~~Hs~~a~~~L~~~~I   81 (92)
T 3ner_A            5 VETSVTYYRLEEVAKRNSL-KELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFE--DVGHSSDAREMLKQYYI   81 (92)
T ss_dssp             CCCCSCEECHHHHTTCEET-TEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHH--HTTCCHHHHHHHGGGEE
T ss_pred             CCCCCCeeCHHHHHhhCCC-CCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHH--HcCCCHHHHHHHHhCee
Confidence            5677899999999999987 599999999999999999999999 7788899998888875  35789999999999999


Q ss_pred             cccCccch
Q psy11686         95 GNISQEDS  102 (939)
Q Consensus        95 G~l~~~~~  102 (939)
                      |.|.+++.
T Consensus        82 G~l~~~~~   89 (92)
T 3ner_A           82 GDIHPSDL   89 (92)
T ss_dssp             EEECGGGS
T ss_pred             EEEChHhc
Confidence            99988774

>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*

Probab=99.78  E-value=5.9e-20  Score=210.84  Aligned_cols=95  Identities=20%  Similarity=0.243  Sum_probs=78.6

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-----EEEEE-cCeeeccccceeccccccc-CCC
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-----FTLLF-SANFFRNLARITTLRIDVT-TDG  909 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~eitt~R~e~~-~~~  909 (939)
                      |+|||||||+|| ++++|+||+|++.|+++.+.+....- ..+..|     +++++ +|..+    ||||+|+|.| .++
T Consensus        38 ylVGG~VRD~LLg~~~~D~Di~t~~~~~~~~~~~~~~~~-~~~~~g~~~gt~~v~~~~g~~~----ev~t~R~e~~~~~~  112 (441)
T 3h38_A           38 YVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLP-GKLVKHDKFMTASLFLKGGLRI----DIATARLEYYESPA  112 (441)
T ss_dssp             EEETHHHHHHHHTCCCCCEEEEESSCHHHHHHHHHTTSC-EEEECCSSTTEEEEEETTSCEE----EEEECCEECCSSSS
T ss_pred             EEEcHHHHHHHCCCCCCCeeEEeCCCHHHHHHHHHHHcC-CEeccCCcCcEEEEEEeCCeEE----EEecccccccCCCC
Confidence            999999999999 89999999999999988766654321 122223     78887 77888    9999999988 567


Q ss_pred             CccccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        910 RHAEVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       910 r~~~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      |++.|.+ .+|++||.||||||||||+++
T Consensus       113 ~~p~V~~-~~l~eDl~RRDFTINAla~~~  140 (441)
T 3h38_A          113 KLPDVEM-STIKKDLYRRDFTINAMAIKL  140 (441)
T ss_dssp             SCCEESC-CCHHHHHHTSSBGGGSCEEEC
T ss_pred             CCCccCC-CCHHHHHHhccchhhhhhccc
Confidence            7777766 689999999999999999975

>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*

Probab=99.78  E-value=6.9e-20  Score=209.18  Aligned_cols=92  Identities=17%  Similarity=0.369  Sum_probs=76.9

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-----EEEEEcCeeeccccceeccccccc-CCCC
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-----FTLLFSANFFRNLARITTLRIDVT-TDGR  910 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~eitt~R~e~~-~~~r  910 (939)
                      |+|||||||+|| ++++|+||+|++.|+++.++|.     +.+++|     ++++.+|..+    ||||+|+|.| +++|
T Consensus        23 y~VGG~VRD~lLg~~~~D~Di~~~~~~~~~~~~~~-----~~~~~g~~~gt~~v~~~~~~~----ev~t~R~e~~~~~~~   93 (404)
T 1miw_A           23 YFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFP-----KTIDVGSKHGTVVVVHKGKAY----EVTTFKTDGDYEDYR   93 (404)
T ss_dssp             EEESHHHHHHHHTCCCCCCEEEESSCHHHHHHHCS-----SEEEEEGGGTEEEEEETTEEE----EEEECEECC------
T ss_pred             EEECHHHHHHHcCCCCCCEEEEeCCCHHHHHHHhh-----hhcccCcCCCeEEEEECCeEE----EEeeecccCCCCCCc
Confidence            999999999999 8999999999999999999986     333444     7888898888    9999999977 7889


Q ss_pred             cc-ccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        911 HA-EVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       911 ~~-~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      |+ .|.|+.+|++||.||||||||||++.
T Consensus        94 ~p~~v~~~~~l~~Dl~RRDfTiNAla~~~  122 (404)
T 1miw_A           94 RPESVTFVRSLEEDLKRRDFTMNAIAMDE  122 (404)
T ss_dssp             ---CCEECSCHHHHHHTSSBSGGGCEECT
T ss_pred             CCcccccCCcHHHHHHhCCCCcchheeCC
Confidence            97 78998999999999999999999985

>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...

Probab=99.77  E-value=2.7e-19  Score=162.54  Aligned_cols=82  Identities=32%  Similarity=0.695  Sum_probs=73.4

Q ss_pred             CCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCcccc
Q psy11686         18 STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGN   96 (939)
Q Consensus        18 ~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~   96 (939)
                      +.++.||++||++||+. ++|||+|+|+|||||+|+..|||| ..|+.++|+|+|..|.  ..+|+..|+++|++|+||.
T Consensus         2 ~~~~~~t~~Ev~~h~~~-~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~--~~~Hs~~a~~~L~~~~IG~   78 (93)
T 1cyo_A            2 KAVKYYTLEEIQKHNNS-KSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--DVGHSTDARELSKTFIIGE   78 (93)
T ss_dssp             CSCCEECHHHHTTCEET-TEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHH--HTTCCHHHHHHHTTTEEEE
T ss_pred             CCCCccCHHHHHhhCCC-CCEEEEECCEEEECCCcchhCcChHHHHHHhcCccchHHHH--HcCCCHHHHHHHHhCeeEE
Confidence            45789999999999987 599999999999999999999999 7888999998888874  3578999999999999999


Q ss_pred             cCccch
Q psy11686         97 ISQEDS  102 (939)
Q Consensus        97 l~~~~~  102 (939)
                      |.+++.
T Consensus        79 l~~~~~   84 (93)
T 1cyo_A           79 LHPDDR   84 (93)
T ss_dssp             ECGGGG
T ss_pred             ecCccc
Confidence            987664

>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*

Probab=99.76  E-value=4.1e-19  Score=164.26  Aligned_cols=85  Identities=32%  Similarity=0.679  Sum_probs=75.0

Q ss_pred             CCCCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCc
Q psy11686         15 EPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYR   93 (939)
Q Consensus        15 ~~~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~   93 (939)
                      .+.+.++.||++||++||+. ++|||+|+|+|||||+|+..|||| ..|+.++|+|++..|.  ..+|+..|+++|++|+
T Consensus         3 ~~~~~~~~~t~~Ev~~h~~~-~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~--~~~Hs~~a~~~L~~~~   79 (104)
T 1hko_A            3 ESSKAVKYYTLEEIQKHNNS-KSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--DVGHSTDARELSKTFI   79 (104)
T ss_dssp             CCCCCCEEECHHHHHHCBSS-SSBEEEETTEEEEHHHHSSSSSSCSHHHHTTCSEECHHHHT--TTTCCHHHHHHHTTTE
T ss_pred             cccccCCccCHHHHHHhcCC-CCEEEEECCEEEECCcchhhCcChHHHHHHhcCccchHHHH--HcCCCHHHHHHHHcCe
Confidence            34567789999999999987 599999999999999999999999 7788899998888874  4578999999999999


Q ss_pred             ccccCccch
Q psy11686         94 IGNISQEDS  102 (939)
Q Consensus        94 VG~l~~~~~  102 (939)
                      ||.|.+.+.
T Consensus        80 IG~l~~~~~   88 (104)
T 1hko_A           80 IGELHPDDR   88 (104)
T ss_dssp             EEEECTTSS
T ss_pred             eEEECCccc
Confidence            999976654

>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}

Probab=99.75  E-value=4.2e-19  Score=159.83  Aligned_cols=82  Identities=22%  Similarity=0.622  Sum_probs=72.8

Q ss_pred             CCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccc
Q psy11686         17 ISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIG   95 (939)
Q Consensus        17 ~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG   95 (939)
                      .+.++.||++||++|++. ++|||+|+|+|||||+|+..|||| ..|+.++|+|+|..|.  ..+|+..|+++|++|+||
T Consensus         3 ~~~~~~~t~~ev~~h~~~-~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~--~~~Hs~~a~~~L~~~~IG   79 (88)
T 2ibj_A            3 SEDVKYFTRAEVAKNNTK-DKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFE--DVGHSSDAREMMKQYKVG   79 (88)
T ss_dssp             CCCCCEECHHHHHTSEET-TEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTEECHHHHH--HHTCCHHHHHHHGGGEEE
T ss_pred             CccCCccCHHHHHHhCCC-CCEEEEECCEEEECCcchhhCcCHHHHHHHhCCCcchHHHH--HcCCCHHHHHHHHcCceE
Confidence            346789999999999987 599999999999999999999999 6788899998888874  347899999999999999


Q ss_pred             ccCccc
Q psy11686         96 NISQED  101 (939)
Q Consensus        96 ~l~~~~  101 (939)
                      .|.+++
T Consensus        80 ~l~~~~   85 (88)
T 2ibj_A           80 ELVAEE   85 (88)
T ss_dssp             EECGGG
T ss_pred             EeCccc
Confidence            997655

>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}

Probab=99.75  E-value=2e-19  Score=161.50  Aligned_cols=82  Identities=22%  Similarity=0.456  Sum_probs=73.3

Q ss_pred             CCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccc
Q psy11686         17 ISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIG   95 (939)
Q Consensus        17 ~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG   95 (939)
                      ..+++.||++||++||+. ++|||+|+|+|||||+|++.|||| +.|+.++|+|+|..|+  ..||+..++++|++|+||
T Consensus         2 ~~~l~~~t~~Ev~~h~~~-~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~--~~h~~~~~~~~L~~~~IG   78 (88)
T 3lf5_A            2 KGRLIEVTEEELKKHNKK-DDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFD--QVHRWVNYESMLKECLVG   78 (88)
T ss_dssp             CCSSEEECHHHHHHCEET-TEEEEEETTEEEECGGGTTTCTTCHHHHHTTTTEECHHHHH--HHHTTCCHHHHTGGGEEE
T ss_pred             CCCCCEeCHHHHHhhCCC-CCEEEEECCEEEECccchhhCcChhhhhhhcCCCcchHHHH--HHCCcHHHHHHHHcCeeE
Confidence            467889999999999987 599999999999999999999999 7888899998888885  467888889999999999


Q ss_pred             ccCccc
Q psy11686         96 NISQED  101 (939)
Q Consensus        96 ~l~~~~  101 (939)
                      .|.+++
T Consensus        79 ~l~~~~   84 (88)
T 3lf5_A           79 RMAIKP   84 (88)
T ss_dssp             EECCCG
T ss_pred             EeCCCc
Confidence            997664

>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1

Probab=99.74  E-value=1.3e-18  Score=157.24  Aligned_cols=82  Identities=28%  Similarity=0.587  Sum_probs=70.3

Q ss_pred             CCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhc--cCCCChHHHHHHhhcCc
Q psy11686         17 ISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAM--YGVHLQDEVFELLESYR   93 (939)
Q Consensus        17 ~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~--~~~~hs~~a~~~l~~~~   93 (939)
                      ....+.||++||++|+++ ++|||+|+|+|||||+|+..|||| +.|+.++|+|++..|..  +..+|+..|+++|++|+
T Consensus         4 ~~~~~~~t~~Ev~~h~~~-~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~~~~~Hs~~a~~~L~~~~   82 (90)
T 1cxy_A            4 EATLPVFTLEQVAEHHSP-DDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYL   82 (90)
T ss_dssp             --CCCBCCHHHHTTCEET-TEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHHHTTTTCCCCHHHHHHHHHTE
T ss_pred             cccCCCcCHHHHHHhcCC-CCEEEEECCEEEECccchhhCcChHHHHHHHCCcchhHHHhhcccccCCCHHHHHHHHhCc
Confidence            345689999999999987 599999999999999999999999 78999999988888851  24678999999999999


Q ss_pred             ccccCc
Q psy11686         94 IGNISQ   99 (939)
Q Consensus        94 VG~l~~   99 (939)
                      ||.|++
T Consensus        83 IG~l~~   88 (90)
T 1cxy_A           83 IGTLEE   88 (90)
T ss_dssp             EEEC--
T ss_pred             eeEeCC
Confidence            999864

>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4

Probab=99.72  E-value=2.1e-18  Score=196.42  Aligned_cols=94  Identities=19%  Similarity=0.245  Sum_probs=68.9

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHH----HHHHhhhcCCCceee-ee-EEEEEcCeeeccccceeccccccc-CCC
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDE----TFATLDFEGLFRSMP-IP-FTLLFSANFFRNLARITTLRIDVT-TDG  909 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~----~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~eitt~R~e~~-~~~  909 (939)
                      |+|||||||.|| ++++|+||+|++.+.+    +.+.+.. . +.... .| +++.++|..+    ||||+|+|.| .++
T Consensus        14 y~VGG~VRD~llg~~~~D~Di~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~t~~v~~~~~~~----e~~~~R~e~~~~~~   87 (390)
T 1vfg_A           14 YIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGV-N-VHPFPEFGTAHLKIGKLKL----EFATARRETYPRPG   87 (390)
T ss_dssp             EEETHHHHHHHTTCCCSEEEEEESSCHHHHHHHHHHHHTC-C-CEEETTTTEEEEEETTEEE----EEEECCSCC-----
T ss_pred             EEEChHHHHHHcCCCCCCEEEEEeCChHHHHHHHHHHcCC-c-eeecCCCcEEEEEECCEEE----EEeccCcccCCCCC
Confidence            999999999999 8999999999998755    3444421 1 11111 12 8888899888    9999999998 466


Q ss_pred             CccccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        910 RHAEVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       910 r~~~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      |++.| ...+|++||.||||||||||+++
T Consensus        88 ~~p~v-~~~~l~~Dl~RRDfTiNAla~~~  115 (390)
T 1vfg_A           88 AYPKV-EPASLKEDLIRRDFTINAMAISV  115 (390)
T ss_dssp             ----C-CCCCHHHHHHTSSBGGGSCEEEC
T ss_pred             CCCcc-CCCCHHHHHhhCCCchhheeecc
Confidence            77665 45699999999999999999975

>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}

Probab=99.72  E-value=2.2e-18  Score=152.99  Aligned_cols=76  Identities=26%  Similarity=0.539  Sum_probs=68.6

Q ss_pred             CCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCchHHHHhhcCCchhh--hhccCCC--ChHHHHHHhhcCccc
Q psy11686         20 LPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGGEIIMKAAGGSIEPF--WAMYGVH--LQDEVFELLESYRIG   95 (939)
Q Consensus        20 ~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG~~il~~aG~d~~~~--~~~~~~~--hs~~a~~~l~~~~VG   95 (939)
                      .+.||++||++|++. ++|||+|+|+|||||+|++.||||+.|+.++|+|+|..  |.  ..|  |+..|+++|++|+||
T Consensus         3 ~~~~t~~ev~~h~~~-~~~wv~i~g~VYDvT~f~~~HPGG~~i~~~aG~D~T~~~~F~--~~h~~hs~~a~~~L~~~~IG   79 (82)
T 1x3x_A            3 DKKYTKEEVAKHNTQ-NDLWIIYDGEVHDMTSFYKEHPGGKVILNKAGQDATSVLKTL--APHVKAADVVMKKLKQTCIG   79 (82)
T ss_dssp             SCEECHHHHHTCEET-TEEEEEETTEEEECGGGGGGCTTGGGGGGGTTSBCHHHHHHS--HHHHHTHHHHHHHHHHHEEE
T ss_pred             CCccCHHHHHhhCCC-CCEEEEECCEEEECCcchhhCcChhhhhhhCCCCCchhhhhh--cccccchHHHHHHHHhCcce
Confidence            578999999999987 49999999999999999999999977888999988887  74  457  899999999999999


Q ss_pred             ccC
Q psy11686         96 NIS   98 (939)
Q Consensus        96 ~l~   98 (939)
                      .|.
T Consensus        80 ~l~   82 (82)
T 1x3x_A           80 KVK   82 (82)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            873

>1xdy_A Bacterial sulfite oxidase; bioinformatics, sequence analysis, electron transfer, oxidoreductase, molybdoenzymes, molybdopterin; HET: MTE; 2.20A {Escherichia coli} SCOP: d.176.1.1 PDB: 1xdq_A*

Probab=99.71  E-value=3.6e-18  Score=185.02  Aligned_cols=132  Identities=14%  Similarity=0.196  Sum_probs=102.4

Q ss_pred             ccHHHHhh-ccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc---CCCC---
Q psy11686        403 FAEEKVRT-FNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL---DSAD---  475 (939)
Q Consensus       403 f~~~~l~~-~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~---~g~d---  475 (939)
                      |++++|++ ||+++++++++|+++               |+    +|+.|+||+|+|||++||++++|++   +|.|   
T Consensus        82 ltl~dL~~~lP~~e~~~~l~Cv~~---------------Ws----~~~~W~GV~L~dLL~~aG~~~~A~~V~f~~~dd~~  142 (298)
T 1xdy_A           82 LDHDDLTRRFPLEERIYRMRCVEA---------------WS----MVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPE  142 (298)
T ss_dssp             EEHHHHHHTSCCEEEEEEEEETTT---------------EE----EEEEEEEEEHHHHHHHHCBCTTCCEEEEEECCCTT
T ss_pred             eeHHHHhccCCCeEEEEEEEecCC---------------Cc----ceeEEEeEEHHHHHHHcCCCCCCeEEEEEeCCChh
Confidence            55556665 789999999999973               65    3899999999999999999998877   5653   


Q ss_pred             ----------------CceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCc
Q psy11686        476 ----------------VQHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDS  527 (939)
Q Consensus       476 ----------------~~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~  527 (939)
                                      .-..++++ ++||++      +||||||+++||+|+|+||||++|      ..+|+|.+++..+
T Consensus       143 ~~~G~~~~~~~~~~~~~Y~~slpl-~~a~~~~~lLA~~mNGepLp~~hG~PlRLVVPg~yG~ksvKwl~~Iev~~~~~~g  221 (298)
T 1xdy_A          143 QMPGQQDRFIGGGLKYPYVEGLRL-DEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPT  221 (298)
T ss_dssp             TCGGGTCTTTTTTCCSSCEEEEEH-HHHHSTTCEEEEEETTEECCGGGTCSCEEECTTBCGGGSCCSEEEEEEESSCCCC
T ss_pred             cccCccccccccccCCCeEEEEEH-HHhcCCCEEEEEeeCCeECCcccCCceEEEeCCccccCcceeccEEEEEeCCCCC
Confidence                            12367887 899987      999999999999999999999874      4699999998865


Q ss_pred             eeecC-------CCCCCCCCCccccccccceeec
Q psy11686        528 SYNTQ-------PENGHPSGYQPRATLQGARLLT  554 (939)
Q Consensus       528 ~y~~~-------~~~~~~~~~~~i~~m~V~SlI~  554 (939)
                      .|+..       ..+..+....|.|.|++.++|+
T Consensus       222 ~We~~~y~~yg~~~n~n~~v~~P~w~q~~er~i~  255 (298)
T 1xdy_A          222 TWNLAAPDEYGFYANVNPYVDHPRWSQATERFIG  255 (298)
T ss_dssp             HHHHHCTTTCCSSCBCCTTSCBTTBCCSEEEECC
T ss_pred             chhhcCccccCcccCCCCCCCCCcccccceeEEc
Confidence            55431       1112233445777777777776

>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A

Probab=99.71  E-value=4.5e-18  Score=194.53  Aligned_cols=95  Identities=18%  Similarity=0.293  Sum_probs=71.3

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeeee-EEEEEcCeeeccccceecccccccC--------
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPIP-FTLLFSANFFRNLARITTLRIDVTT--------  907 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~eitt~R~e~~~--------  907 (939)
                      |+|||||||+|| ++++|+||+|++.|+++.++|.....+. ...+ +++.+++..+    ||+|||.+.|.        
T Consensus        36 ylVGG~VRD~LLg~~~~D~Di~t~a~p~~~~~~f~~~~~~g-~~f~~~~v~~~~~~~----ev~t~R~~~~~~~~~~~~~  110 (415)
T 3aql_A           36 WLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVG-RRFRLAHVMFGPEII----EVATFRGHHEGNVSDRTTS  110 (415)
T ss_dssp             EEETHHHHHHHHSSCCSCCEEEESSCHHHHHHHTTTSCCCC-CSSSCCEEESSSCEE----EEEECCC------------
T ss_pred             EEECHHHHHHHcCCCCCCEEEEcCCCHHHHHHHhhhCeEec-ccCCEEEEEECCcEE----EEeeecccccccccccccc
Confidence            999999999999 8999999999999999999996443210 1112 6777888877    99999998652        


Q ss_pred             ----CCCcc-ccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        908 ----DGRHA-EVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       908 ----~~r~~-~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                          ++|+. .+.|+ +|++||.||||||||||||+
T Consensus       111 ~~~~~g~~~~~~~~~-tl~eDl~RRDFTINAla~~~  145 (415)
T 3aql_A          111 QRGQNGMLLRDNIFG-SIEEDAQRRDFTINSLYYSV  145 (415)
T ss_dssp             -----------CCCC-CHHHHHTTSSBSGGGCEEET
T ss_pred             cccCCCcccccccCC-CHHHHHhcCCccceeEEEeC
Confidence                23332 23454 89999999999999999986

>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}

Probab=99.68  E-value=1.2e-18  Score=162.86  Aligned_cols=85  Identities=19%  Similarity=0.325  Sum_probs=73.0

Q ss_pred             CCCCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCc
Q psy11686         15 EPISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYR   93 (939)
Q Consensus        15 ~~~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~   93 (939)
                      ++.+..+.||++||++|++. ++|||+|+|+|||||+|+..|||| +.|+.++|+|+|..|.  ..+|+..|+++|++|+
T Consensus        18 ~m~~~~~~~t~~Ev~~h~~~-~d~wvvi~G~VYDVT~fl~~HPGG~~~l~~~aGkDaT~~F~--~~~Hs~~a~~~L~~~~   94 (112)
T 2keo_A           18 GNNEKVTLVRIADLENHNND-GGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALE--AALQFEDTRESMHAFC   94 (112)
T ss_dssp             ---CCCCEECHHHHHHHHHH-TCCEEEETTEEEEHHHHHHHHTSTTSTTGGGTTSCHHHHHH--HHHHSTTGGGTHHHHE
T ss_pred             cCCCCCCccCHHHHHHhcCC-CCEEEEECCEEEECCcchhhCCCchhhhhhhCCccchHHHh--HcCCCHHHHHHHHhCc
Confidence            34556789999999999986 599999999999999999999999 7889999998888875  3357888999999999


Q ss_pred             ccccCccch
Q psy11686         94 IGNISQEDS  102 (939)
Q Consensus        94 VG~l~~~~~  102 (939)
                      ||.|.++++
T Consensus        95 IG~l~~~e~  103 (112)
T 2keo_A           95 VGQYLEPDQ  103 (112)
T ss_dssp             EEEECCHHH
T ss_pred             eEeeCCccc
Confidence            999986654

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=99.39  E-value=1.8e-13  Score=160.37  Aligned_cols=83  Identities=23%  Similarity=0.441  Sum_probs=69.3

Q ss_pred             CCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHh-hcCcc
Q psy11686         17 ISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELL-ESYRI   94 (939)
Q Consensus        17 ~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l-~~~~V   94 (939)
                      ....+.||++||++||+. ++|||+|+|+|||||+|++.|||| +.|+.++|+|+|..|+.  .|++..+.++| ++|+|
T Consensus         5 ~~~~~~~t~~ev~~h~~~-~~~wv~i~g~VYDvt~f~~~HPGG~~~i~~~aG~DaT~~f~~--~H~~~~~~~~l~~~~~i   81 (511)
T 1kbi_A            5 DMNKQKISPAEVAKHNKP-DDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEP--LHAPNVIDKYIAPEKKL   81 (511)
T ss_dssp             CSCSCCBCTTHHHHCEET-TEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHHHHGG--GSCTTHHHHHSCGGGEE
T ss_pred             CCCCCccCHHHHHHhCCC-CCEEEEECCEEEECCcchhhCcChHHHHHHHcCcchhhhhhh--cCCHHHHHHhhccccEE
Confidence            355689999999999987 599999999999999999999999 78889999988888753  45555455555 78999


Q ss_pred             cccCccch
Q psy11686         95 GNISQEDS  102 (939)
Q Consensus        95 G~l~~~~~  102 (939)
                      |.|++++.
T Consensus        82 G~l~~~~~   89 (511)
T 1kbi_A           82 GPLQGSMP   89 (511)
T ss_dssp             EEBCSCCC
T ss_pred             EEecCCcc
Confidence            99987664

>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A

Probab=99.08  E-value=5e-11  Score=109.65  Aligned_cols=54  Identities=17%  Similarity=0.252  Sum_probs=46.8

Q ss_pred             CCcCHHHHhhccCCC--CCeEEEEcCeEeecccchh-cCCCchHHHHhhcCCchhhhh
Q psy11686         21 PWYSLSDIQNHKDLK--SSIWVVFRQGVYDITEFVQ-MHPGGEIIMKAAGGSIEPFWA   75 (939)
Q Consensus        21 ~~~t~~ev~~h~~~~--~~~wvii~g~VYDvT~f~~-~HPGG~~il~~aG~d~~~~~~   75 (939)
                      +.||++||++||..+  .+|||+|+|+|||||+|.. +||||.. ..+||+|+|..|.
T Consensus         3 ~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~~-~~~AG~DaT~~f~   59 (102)
T 1j03_A            3 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDY-SMFAGKDASRALG   59 (102)
T ss_dssp             CCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSSTT-TTTTTSBCHHHHH
T ss_pred             cccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCcc-cccccchHHHHHH
Confidence            579999999999763  2799999999999999987 8999973 5899998887774

>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}

Probab=98.08  E-value=3.6e-06  Score=76.79  Aligned_cols=75  Identities=16%  Similarity=0.049  Sum_probs=61.3

Q ss_pred             EEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeEEEeEEEeecCCCCce
Q psy11686        294 AICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKE  373 (939)
Q Consensus       294 ~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W~~W~~~~~~~~~~~~  373 (939)
                      .|+.|.+|+.+.. ++.++|.+-||+..| .|.+|||.+||+.-.                ..+|..|++.|+..+|.+.
T Consensus         3 sItsP~~ga~v~~-g~~v~i~a~A~D~dg-~V~kVef~vdg~~vg----------------~dt~apy~~~w~~~~G~ht   64 (98)
T 3pe9_A            3 KLTAPKSNVVAYG-NEFLKITATASDSDG-KISRVDFLVDGEVIG----------------SDREAPYEYEWKAVEGNHE   64 (98)
T ss_dssp             EEEECCTTCCEET-TSEEEEEEEECCSSS-CEEEEEEEETTEEEE----------------EECSSSEEEEEECCSEEEE
T ss_pred             EEeeCCCcCEEcC-CCEEEEEEEEEeCCC-CEEEEEEEECCEEec----------------ccccCCEEEEEEcCCccEE
Confidence            4889999999986 678999999998755 699999999996321                2367889999998766664


Q ss_pred             --eeeeecccCCCCC
Q psy11686        374 --VSIMDMLMGKKPH  386 (939)
Q Consensus       374 --vra~d~~~~~~p~  386 (939)
                        +||.|..++.+.+
T Consensus        65 l~a~AtD~~G~~~tS   79 (98)
T 3pe9_A           65 ISVIAYDDDDAASTP   79 (98)
T ss_dssp             EEEEEEETTCCBCCC
T ss_pred             EEEEEEECCCCEEee
Confidence              8999999997754

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=93.67  E-value=0.052  Score=55.17  Aligned_cols=74  Identities=9%  Similarity=0.015  Sum_probs=54.5

Q ss_pred             EEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeEEEeEEEeecC-CCCc
Q psy11686        294 AICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVD-PKTK  372 (939)
Q Consensus       294 ~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W~~W~~~~~~~-~~~~  372 (939)
                      .|+.|.+|+.+.. +..++|.+-|+ ..+ +|.+|||.+||..      + +         .-.|..|++.|... .|.+
T Consensus         3 ~ItsP~~g~~~~~-g~~vtv~~~As-~d~-~V~~Ve~~~dg~~------v-~---------~~t~~~ys~~~~~~~~G~h   63 (190)
T 3pdd_A            3 TIDSPVAGERFEA-GKDINISATVK-SKT-PVSKVEFYNGDTL------I-S---------SDTTAPYTAKITGAAVGAY   63 (190)
T ss_dssp             EEEESCTTCEEET-TSCEEEEEEEC-CSS-CEEEEEEEETTEE------E-E---------EECSSSEEEEECSCCSEEE
T ss_pred             EEecCCCCCEEcC-CCeEEEEEEEe-CCC-CEEEEEEEECCEE------E-c---------cccCCceEEEeccCCCccE
Confidence            4889999999974 45899999998 434 7999999999842      1 1         11345577788754 4555


Q ss_pred             e--eeeeecccCCCCC
Q psy11686        373 E--VSIMDMLMGKKPH  386 (939)
Q Consensus       373 ~--vra~d~~~~~~p~  386 (939)
                      .  +||+|..++.+..
T Consensus        64 tlta~A~D~aGn~s~s   79 (190)
T 3pdd_A           64 NLKAVAVLSDGRRIES   79 (190)
T ss_dssp             EEEEEEEETTSCEEEC
T ss_pred             EEEEEEEECCCCEeee
Confidence            3  8999999998654

>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A

Probab=87.80  E-value=1.3  Score=44.68  Aligned_cols=78  Identities=15%  Similarity=0.065  Sum_probs=54.8

Q ss_pred             cceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeEEEeEEEeecCC
Q psy11686        290 PVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDP  369 (939)
Q Consensus       290 ~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W~~W~~~~~~~~  369 (939)
                      ++.-.|+.|..|..+.. ++.++|.+-|-...| .|.+|||.+||..--   .   .          ....|++.|..+.
T Consensus        91 ~Ptv~itsP~~g~~~~~-~~~vtl~~~AsD~~g-~V~~Ve~~~dg~~v~---t---~----------t~~~y~~~~~~~~  152 (190)
T 3pdd_A           91 KPTVKLTAPKSNVVAYG-NEFLKITATASDSDG-KISRVDFLVDGEVIG---S---D----------REAPYEYEWKAVE  152 (190)
T ss_dssp             CCEEEEEECCTTCCCBT-TSEEEEEEEEECSSS-CEEEEEEEETTEEEE---E---E----------CSSSEEEEEECCS
T ss_pred             CCceeecCCCCCcEEec-CCeEEEEEEEECCCC-cEEEEEEEECCEEEe---c---c----------cCCCEEEEEecCC
Confidence            34456889999988764 578999999976544 599999999984211   1   0          1123566777655


Q ss_pred             CCce--eeeeecccCCCC
Q psy11686        370 KTKE--VSIMDMLMGKKP  385 (939)
Q Consensus       370 ~~~~--vra~d~~~~~~p  385 (939)
                      |.+.  ++|+|..++...
T Consensus       153 G~~tl~a~A~D~aGn~s~  170 (190)
T 3pdd_A          153 GNHEISVIAYDDDDAAST  170 (190)
T ss_dssp             EEEEEEEEEEETTCCBCC
T ss_pred             eeEEEEEEEEECCCCEEe
Confidence            5553  899999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	939
d1soxa2	91	d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal dom	6e-21
d2a9da1	123	b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal d	7e-21
d2a9da1	123	b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal d	2e-13
d1ou5a1	204	a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-te	1e-20
d1ou5a1	204	a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-te	2e-06
d1ogpa1	127	b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal d	1e-19
d1ogpa1	127	b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal d	2e-12
d1mj4a_	80	d.120.1.1 (A:) Sulfite oxidase, N-terminal domain	6e-19
d1miwa1	265	a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-te	6e-17
d1euea_	86	d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegic	3e-16
d1cxya_	81	d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira	9e-16
d1cyoa_	88	d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [Ta	2e-13
d1kbia2	97	d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal	1e-11
d2a9da2	249	d.176.1.1 (A:95-343) Sulfite oxidase, middle catal	6e-09
d2a9da2	249	d.176.1.1 (A:95-343) Sulfite oxidase, middle catal	3e-08
d2a9da2	249	d.176.1.1 (A:95-343) Sulfite oxidase, middle catal	4e-06
d2a9da2	249	d.176.1.1 (A:95-343) Sulfite oxidase, middle catal	0.001
d1ogpa2	261	d.176.1.1 (A:2-262) Sulfite oxidase, middle cataly	2e-08
d1ogpa2	261	d.176.1.1 (A:2-262) Sulfite oxidase, middle cataly	4e-07
d1ogpa2	261	d.176.1.1 (A:2-262) Sulfite oxidase, middle cataly	3e-06
d1ogpa2	261	d.176.1.1 (A:2-262) Sulfite oxidase, middle cataly	3e-04
d1vfga1	215	a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aqui	4e-08
d1ou5a2	152	d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head	1e-07
d1ou5a2	152	d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head	1e-05
d1ou5a2	152	d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head	0.004
d1miwa2	139	d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head d	0.003

>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Sulfite oxidase, N-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 86.1 bits (213), Expect = 6e-21
 Identities = 35/88 (39%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 19  TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
           + P Y+  ++  H+  +  +WV     V+D+T+FV++HPGG + I+ AAGG++EPFWA+Y
Sbjct: 1   SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALY 60

Query: 78  GVHLQDEVFELLESYRIGNISQEDSKLA 105
            VH +  V ELL+ Y++G +S +++  A
Sbjct: 61  AVHGEPHVLELLQQYKVGELSPDEAPAA 88

>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 86.9 bits (215), Expect = 7e-21
 Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 7/109 (6%)

Query: 288 ELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQD 347
           ELPV SA+  P   A +     ++ V+GYAWSGGG+ +VRVDV++D GRTW VA   G  
Sbjct: 1   ELPVQSAVTQPRPGAAVPPG--ELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDK 58

Query: 348 SQAPLTRHWGWTLWRATIPVDP---KTKEVSIMDMLMGKKPHDIDFATN 393
             AP  R W W LW  T+PV+           +D     +P  +    N
Sbjct: 59  --APPGRAWAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWN 105

>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.8 bits (160), Expect = 2e-13
 Identities = 38/77 (49%), Positives = 45/77 (58%), Gaps = 3/77 (3%)

Query: 447 GNATWTGARLVDVLKAAGISPDQSLDSADV---QHVHVEIWSKAVDSSYNTQPESFANIW 503
           G  TW  ARL+      G +   +L    V       +EI  KAVDSSYN QP+S A IW
Sbjct: 45  GGRTWKVARLMGDKAPPGRAWAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIW 104

Query: 504 NLRGVLSNAYHRVRVEI 520
           NLRGVLS A+HRVRV +
Sbjct: 105 NLRGVLSTAWHRVRVSV 121

>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 204

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: tRNA CCA-adding enzyme, C-terminal domains
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 89.0 bits (220), Expect = 1e-20
 Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 4/187 (2%)

Query: 669 FVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTEL 728
           FVG    RIQEDYLRILRYFRF+ RI + P +H  E L AI  N  GL  ISGERIW EL
Sbjct: 4   FVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVEL 63

Query: 729 NKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTF 788
            KIL G+    ++  +   ++  +  L A      + E  K  +  +         L + 
Sbjct: 64  KKILVGNHVNHLIHLIYDLDVAPYIGLPAN---ASLEEFDKVSKNVDGFSPKPVTLLASL 120

Query: 789 PMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEM 848
               + + +   R+       K   L  +K   D +               +  S   + 
Sbjct: 121 FKVQDDVTKLDLRL-KIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDA 179

Query: 849 MLKMLEI 855
             ++ E+
Sbjct: 180 TTRVCEL 186

>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 204

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: tRNA CCA-adding enzyme, C-terminal domains
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 794 IIR--QFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFSKEMMLK 851
           I+R  +F+ RI + P +H  E L AI +N  GL  ISGERIW EL KIL G+    ++  
Sbjct: 19  ILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHL 78

Query: 852 MLEINMFPHLGTDETFATLDFEGLFRSM----PIPFTLL 886
           + ++++ P++G     +  +F+ + +++    P P TLL
Sbjct: 79  IYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLL 117

>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 83.5 bits (206), Expect = 1e-19
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 10/113 (8%)

Query: 288 ELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQD 347
           + PV SAIC       +K    ++ ++GYA SGGG+ I RVD+++D G+ W  A+ T + 
Sbjct: 1   DFPVQSAICSVEDVQMVK--PGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEP 58

Query: 348 SQAPLTRH-----WGWTLWRATIPVDPKTKEVSI--MDMLMGKKPHDIDFATN 393
            +  ++ H     W W L+ ATI V  +T EV    +D     +P +++   N
Sbjct: 59  GKQYISEHSSSDKWAWVLFEATIDV-SQTTEVIAKAVDSAANVQPENVESVWN 110

>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.1 bits (153), Expect = 2e-12
 Identities = 20/39 (51%), Positives = 31/39 (79%)

Query: 482 EIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI 520
           E+ +KAVDS+ N QPE+  ++WNLRGVL+ ++HRV + +
Sbjct: 88  EVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLRL 126

>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Sulfite oxidase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (197), Expect = 6e-19
 Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 23 YSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHL 81
          Y+  ++ +H   ++ IWV     V+D+TEFV +HPGG   +M AAGG +EPFWA+Y VH 
Sbjct: 5  YTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHN 64

Query: 82 QDEVFELLESYRIGNI 97
          Q  V ELL  Y+IG +
Sbjct: 65 QSHVRELLAQYKIGEL 80

>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Length = 265

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: tRNA CCA-adding enzyme, C-terminal domains
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 79.5 bits (195), Expect = 6e-17
 Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 6/165 (3%)

Query: 669 FVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTEL 728
            VG+   R +ED LR++R  RF + +         +   AI  N   L +IS ER+  E+
Sbjct: 4   TVGEAEKRFREDALRMMRAVRFVSELGFALA---PDTEQAIVQNAPLLAHISVERMTMEM 60

Query: 729 NKILGGSFSKEMMLKMLYQNLLLFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTF 788
            K+LGG F+   +  +    L  +  L     +E  + L        L     +W L   
Sbjct: 61  EKLLGGPFAARALPLLAETGLNAY--LPGLAGKEKQLRLAAAYRWPWLAAREERWALLCH 118

Query: 789 PMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIW 833
            +     R F       PN   +E  + +    D     +     
Sbjct: 119 ALGVQESRPFLRAW-KLPNKVVDEAGAILTALADIPRPEAWTNEQ 162

>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.3 bits (177), Expect = 3e-16
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 19  TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMY 77
            + +Y L ++          W+V    VYDIT F+  HPGG EI+++ AG       +  
Sbjct: 3   AVTYYRLEEVAKRNT-AEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADA--TESFE 59

Query: 78  GVHLQDEVFELLESYRIGNISQEDSK 103
            +    +  E+L+ Y IG++   D K
Sbjct: 60  DIGHSPDAREMLKQYYIGDVHPNDLK 85

>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b558
species: Ectothiorhodospira vacuolata [TaxId: 1054]

 Score = 70.7 bits (173), Expect = 9e-16
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EPFWAM 76
          TLP ++L  +  H       W+     VYD+T +V  HPG   +++   G    E +   
Sbjct: 1  TLPVFTLEQVAEHHS-PDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETK 59

Query: 77 YGVHL-QDEVFELLESYRIGN 96
                      LL+ Y IG 
Sbjct: 60 SYGEPHSSLAARLLQRYLIGT 80

>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.5 bits (157), Expect = 2e-13
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 18  STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAM 76
             + +Y+L +IQ H +   S W++    VYD+T+F++ HPGG E++ + AGG        
Sbjct: 2   KAVKYYTLEEIQKHNN-SKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDAT--ENF 58

Query: 77  YGVHLQDEVFELLESYRIGNISQEDSK 103
             V    +  EL +++ IG +  +D  
Sbjct: 59  EDVGHSTDARELSKTFIIGELHPDDRS 85

>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Flavocytochrome b2, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (145), Expect = 1e-11
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 11/99 (11%)

Query: 19  TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSI-EPFWAM 76
                S +++  H       WVV    VYD+T F+  HPGG ++I   AG  +   F   
Sbjct: 7   NKQKISPAEVAKHNK-PDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEP- 64

Query: 77  YGVHLQDEVFE-LLESYRIGNISQEDSKLAAKDIASDPY 114
             +H  + + + +    ++G +          ++   PY
Sbjct: 65  --LHAPNVIDKYIAPEKKLGPLQGSM----PPELVCPPY 97

>d2a9da2 d.176.1.1 (A:95-343) Sulfite oxidase, middle catalytic domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 249

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.5 bits (133), Expect = 6e-09
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPS 149
           DP+  +P R P L+  S KP+NAEPP  +L E FLTP+
Sbjct: 1   DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPN 38

>d2a9da2 d.176.1.1 (A:95-343) Sulfite oxidase, middle catalytic domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 249

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 27/39 (69%), Positives = 31/39 (79%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFAKSPAIQ 287
           +V +S  ES SHWQQNDYKGFSP  DWDTVD+  +PAIQ
Sbjct: 211 RVAVSPDESPSHWQQNDYKGFSPCVDWDTVDYRTAPAIQ 249

>d2a9da2 d.176.1.1 (A:95-343) Sulfite oxidase, middle catalytic domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 249

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.1 bits (111), Expect = 4e-06
 Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 20/198 (10%)

Query: 205 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLLRIPFCSHTGKVILSDHESTSHWQQN 264
           DP+  +P R P L+  S KP+NAEPP  +L        F +        +H      + +
Sbjct: 1   DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAER-----FLTPNELFFTRNHLPVPAVEPS 55

Query: 265 DYK-----GFSPSTDWDTVDFAKSPAIQELPVISAIC-LPVADAKLKLENHQMEVQGYAW 318
            Y+         +      +          P       L  A  +    +    V+G  W
Sbjct: 56  SYRLRVDGPGGRTLSLSLAEL-----RSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPW 110

Query: 319 SGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPVDPKTKEVSIMD 378
             G  +  R        R   V    G   +     H  +    A     P    +    
Sbjct: 111 DIGAISTARWGGA----RLRDVLLHAGFPEELQGEWHVCFEGLDADPGGAPYGASIPYGR 166

Query: 379 MLMGKKPHDIDFATNATP 396
            L       + +  N T 
Sbjct: 167 ALSPAADVLLAYEMNGTE 184

>d2a9da2 d.176.1.1 (A:95-343) Sulfite oxidase, middle catalytic domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 249

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.4 bits (91), Expect = 0.001
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 397 DQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARL 456
            ++++ F + +V    +        CA     E   V+PVKGL W   A+  A W GARL
Sbjct: 74  AELRSRFPKHEVTATLQ--------CAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARL 125

Query: 457 VDVLKAAGISPDQ 469
            DVL  AG   + 
Sbjct: 126 RDVLLHAGFPEEL 138

>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 261

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 54.4 bits (130), Expect = 2e-08
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 110 ASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPS 149
               Y  EP R P LK  + +P+NAEPP S LV +++TP 
Sbjct: 5   GPSEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTPV 44

>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 261

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.1 bits (119), Expect = 4e-07
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 365 IPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCAR 424
           IP+    +  S+    + + P  +          ++++       T           CA 
Sbjct: 55  IPIVDHLQSYSVTLTGLIQNPRKLFI------KDIRSLPKYNVTATLQ---------CAG 99

Query: 425 MNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIW 484
                  +V+ V+G+ W  +A+GNA W GA+L DVL+  GI    +  +   +HV     
Sbjct: 100 NRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFVSV 159

Query: 485 SKAVDSSYNTQPES 498
            +  + +      S
Sbjct: 160 DRCKEENGGPYKAS 173

>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 261

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 10/123 (8%)

Query: 203 ASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLYSSLL---RIPFCSHTGKVILSDHESTS 259
               Y  EP R P LK  + +P+NAEPP S L SS +    + +  + G +     +   
Sbjct: 5   GPSEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTPVDLFYKRNHGPI--PIVDHLQ 62

Query: 260 HWQQNDYKGFSPSTDWDTVDFAKSPAIQELPVISAICLPVADAKLKLENHQMEVQGYAWS 319
            +                 D    P    +       L  A  +    +    V+G  W 
Sbjct: 63  SYSVTLTGLIQNPRKLFIKDIRSLPKY-NVTAT----LQCAGNRRTAMSKVRNVRGVGWD 117

Query: 320 GGG 322
              
Sbjct: 118 VSA 120

>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 261

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 249 KVILSDHESTSHWQQNDYKGFSPSTDWDTVDFA-KSPAI 286
            + +   ES   + Q DYK F PS +WD ++++ + P +
Sbjct: 223 SINVIAEESQGFFMQKDYKMFPPSVNWDNINWSSRRPQM 261

>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 215

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

 Score = 52.5 bits (125), Expect = 4e-08
 Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 12/189 (6%)

Query: 676 RIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGS 735
              ED +RILR  RF  R+    +   E++L    N    L      R+  E+   L   
Sbjct: 9   SFIEDPVRILRALRFAGRLNFKLSRSTEKLLKQAVNL-GLLKEAPRGRLINEIKLALRED 67

Query: 736 FSKEMMLKMLYQNLL--LFSKLKATTMREYIVELMKY--------KEKSELIKDFHKWRL 785
              E++       +L  +    +        +  ++           +  +   +    +
Sbjct: 68  RFLEILELYRKYRVLEEIIEGFQWNEKVLQKLYALRKVVDWHALEFSEERIDYGWLYLLI 127

Query: 786 PTFPMNGNIIRQFFARICNNPNNHKEEVLSAIKKNLDGLHNISGERIWTELNKILGGSFS 845
               ++    + F   + + P+  +E       K       +   +   E+ ++L    +
Sbjct: 128 LISNLDYERGKHFLEEM-SAPSWVRETYKFMKFKLGSLKEELKKAKENYEVYRLLKPLHT 186

Query: 846 KEMMLKMLE 854
             ++L MLE
Sbjct: 187 SVLLLLMLE 195

>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: tRNA CCA-adding enzyme, head domain
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 571 KMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTV 609
           KMKL SPEF S FT  LK L  +F K  ++LRIAG G V
Sbjct: 2   KMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAG-GAV 39

>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: tRNA CCA-adding enzyme, head domain
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 33/41 (80%), Positives = 36/41 (87%)

Query: 896 ARITTLRIDVTTDGRHAEVQFTEDWKLDANRRDLTVNSMFL 936
             ITTLRIDVTTDGRHAEV+FT DW+ DA RRDLT+NSMFL
Sbjct: 93  FEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFL 133

>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: tRNA CCA-adding enzyme, head domain
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.004
 Identities = 29/60 (48%), Positives = 37/60 (61%)

Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVK 437
           D+L G KP DIDFAT ATP QMK MF    +R  N +GEKHGT+ AR++++         
Sbjct: 41  DLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRI 100

>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: tRNA CCA-adding enzyme, head domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 378 DMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVK 437
           D+L+G+   D+D AT+A P+ + A+F         + G KHGTV      K         
Sbjct: 31  DLLLGRPIGDVDIATSALPEDVMAIF-----PKTIDVGSKHGTVVVVHKGKAYEVTTFKT 85

Query: 438 GLTWGH 443
              +  
Sbjct: 86  DGDYED 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	939
d1ogpa2	261	Sulfite oxidase, middle catalytic domain {Mouse-ea	100.0
d2a9da2	249	Sulfite oxidase, middle catalytic domain {Chicken	100.0
d2a9da1	123	Sulfite oxidase, C-terminal domain {Chicken (Gallu	99.94
d1ogpa2	261	Sulfite oxidase, middle catalytic domain {Mouse-ea	99.93
d1xdya_	269	Bacterial sulfite oxidase YedY {Escherichia coli [	99.93
d2a9da2	249	Sulfite oxidase, middle catalytic domain {Chicken	99.92
d1ogpa1	127	Sulfite oxidase, C-terminal domain {Mouse-ear cres	99.9
d1soxa2	91	Sulfite oxidase, N-terminal domain {Chicken (Gallu	99.85
d1ou5a2	152	tRNA CCA-adding enzyme, head domain {Human (Homo s	99.84
d1vfga2	136	Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6	99.84
d1cyoa_	88	Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1euea_	86	Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 101	99.82
d1mj4a_	80	Sulfite oxidase, N-terminal domain {Human (Homo sa	99.82
d1cxya_	81	Cytochrome b558 {Ectothiorhodospira vacuolata [Tax	99.81
d1miwa2	139	tRNA CCA-adding enzyme, head domain {Bacillus stea	99.8
d1miwa1	265	tRNA CCA-adding enzyme, C-terminal domains {Bacill	99.79
d1vfga1	215	Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6	99.77
d1ou5a1	204	tRNA CCA-adding enzyme, C-terminal domains {Human	99.77
d1kbia2	97	Flavocytochrome b2, N-terminal domain {Baker's yea	99.72
d1xdya_	269	Bacterial sulfite oxidase YedY {Escherichia coli [	99.71
d1vfga2	136	Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6	99.59
d1ou5a2	152	tRNA CCA-adding enzyme, head domain {Human (Homo s	99.58
d1miwa2	139	tRNA CCA-adding enzyme, head domain {Bacillus stea	99.51
d1t0ga_	109	Putative steroid binding protein AT2G24940 {Thale	96.92

>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.6e-40  Score=347.20  Aligned_cols=170  Identities=27%  Similarity=0.379  Sum_probs=156.3

Q ss_pred             CCCCCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee------------EEEEEeecccCCcceeeeHHH
Q psy11686        110 ASDPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS------------STITLDQAIVSKQLSSFKHSD  177 (939)
Q Consensus       110 ~~d~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~------------w~l~v~~G~v~~~p~~~t~~d  177 (939)
                      ..++|..+|.|+|.|++++.+|+|+|||.+.|.+++|||+++||+||            |+|+|+ |+|++ |++|||+|
T Consensus         5 ~p~~~~~~p~r~p~l~~~~~~P~n~e~p~~~l~~~~iTP~~~~fvRnh~~vP~~d~~~~w~L~V~-G~V~~-p~~ltl~d   82 (261)
T d1ogpa2           5 GPSEYSQEPPRHPSLKVNAKEPFNAEPPRSALVSSYVTPVDLFYKRNHGPIPIVDHLQSYSVTLT-GLIQN-PRKLFIKD   82 (261)
T ss_dssp             CCSSSTTCCCCCTTCEEEETTTTEEECCHHHHTSCSSCCGGGSCEECSSCCCEESCSTTCEEEEE-ESSSS-CCEEEHHH
T ss_pred             CCcccccCCCCCcceEECCCCCCcccCChHHhccCCcCCCCCEEEEccCCCCCcCccCcEEEEEe-cccCC-CcccCHHH
Confidence            35788999999999999999999999999999889999999999999            999999 99998 99999999


Q ss_pred             HHHhccc-------eeccccCc---------------------cCccccHHHHHhCCCCCC-------------------
Q psy11686        178 EKLKLVK-------VMAGNISQ---------------------EDSKLAAKDIASDPYVME-------------------  210 (939)
Q Consensus       178 l~~~~p~-------~C~gn~~~---------------------~~~~~~~~~vL~~~g~~d-------------------  210 (939)
                      |+ +||+       +|+||+|+                     +|+|++++|||++||++.                   
T Consensus        83 L~-~~p~~~~~~~l~C~gN~r~~~~~~~~~~g~~W~~gai~~a~WtGv~L~dlL~~aGv~~~~~~~~~~a~~v~f~g~D~  161 (261)
T d1ogpa2          83 IR-SLPKYNVTATLQCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFVSVDR  161 (261)
T ss_dssp             HH-TSCEEEEEEEEECTTTTHHHHHHHSCCCSCCCCSCCEEEEEEEEEEHHHHHHTTTCCTTCSCCTTCCCEEEEEESCC
T ss_pred             Hh-cCCCEEEEEEEEecccchhcccccccccccCccccccccceEEeeEHHHHHHHhCCccccccccCCceEEEEEeccc
Confidence            99 8999       99999763                     488899999999999631                   


Q ss_pred             -------C--CCcchhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCC
Q psy11686        211 -------P--VRSPLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYK  267 (939)
Q Consensus       211 -------~--~~ipl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~  267 (939)
                             +  .||||++|+++       |+|||||||++ ||||||||||      ||||++|+|++++++||||++||+
T Consensus       162 ~~~~~~~~y~~sipl~~al~~~~dvlLA~~mNGepLp~~hG~PlRLvVPg~~G~~svKWl~~I~v~d~~~~g~w~~~~Y~  241 (261)
T d1ogpa2         162 CKEENGGPYKASITLSQATNPEADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFMQKDYK  241 (261)
T ss_dssp             CGGGTTCCCEEEEEHHHHHCGGGCCEEEEEETTEECCTTTTTTCEEECTTSCGGGSCCSEEEEEEESSCCCCHHHHSSSC
T ss_pred             ccccCCCCceeEEEHHHhhCcccceEEEEeeCCcccccccCCcEEEEccCceeeeCceEeeEEEEEecCCCCcceecCcc
Confidence                   1  25999999974       99999999999 9999999999      999999999999999999999999


Q ss_pred             ccCCCCCCCCccCCC
Q psy11686        268 GFSPSTDWDTVDFAK  282 (939)
Q Consensus       268 ~~~~~~~~~~~~~~~  282 (939)
                      +++|.+++++.+|..
T Consensus       242 ~~~p~~~~~~~~~~~  256 (261)
T d1ogpa2         242 MFPPSVNWDNINWSS  256 (261)
T ss_dssp             CCCTTCCTTTCCGGG
T ss_pred             ccCCCCCCcCCCccc
Confidence            999999888777643

>d2a9da2 d.176.1.1 (A:95-343) Sulfite oxidase, middle catalytic domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=9.2e-40  Score=345.08  Aligned_cols=174  Identities=36%  Similarity=0.524  Sum_probs=158.6

Q ss_pred             CCCccCCCCccccccccCCCCCCCCCCCccccccccCCCCceEee-----------EEEEEeecccCCcceeeeHHHHHH
Q psy11686        112 DPYVMEPVRSPLLKATSLKPYNAEPPPSMLVENFLTPSLLSQVGS-----------STITLDQAIVSKQLSSFKHSDEKL  180 (939)
Q Consensus       112 d~~~~dP~r~p~l~v~~~~P~n~e~p~~~l~~~~~TP~~~~~v~~-----------w~l~v~~G~v~~~p~~~t~~dl~~  180 (939)
                      |||..+|.|+|.|++++.+|+|+|||.+.|.+++|||+++||+||           |+|+|+ |+|++ |++|||+||++
T Consensus         1 ~p~~~~p~k~p~l~~~~~~P~~~e~p~~~l~~~~iTP~~~~yvr~h~~~P~~d~~~w~L~V~-G~V~~-p~~ltl~dL~a   78 (249)
T d2a9da2           1 DPFAGDPPRHPGLRVNSQKPFNAEPPAELLAERFLTPNELFFTRNHLPVPAVEPSSYRLRVD-GPGGR-TLSLSLAELRS   78 (249)
T ss_dssp             CTTTTCCCCCTTSEEEETTTTEEECCHHHHTSSSSCCTTTSCEECSSCCCCCCTTTCEEEEE-CC----CEEEEHHHHHH
T ss_pred             CCCCCCCCCCCceEECCCCCCcCCCCHHHhccCCcCCCCCEEEEcCCCCCCCCCCCCEEEEe-eecCC-cceeEHHHHHh
Confidence            589999999999999999999999999999899999999999998           999999 99998 99999999996


Q ss_pred             hccc-------eeccccCc---------------------cCccccHHHHHhCCCCCC----------------------
Q psy11686        181 KLVK-------VMAGNISQ---------------------EDSKLAAKDIASDPYVME----------------------  210 (939)
Q Consensus       181 ~~p~-------~C~gn~~~---------------------~~~~~~~~~vL~~~g~~d----------------------  210 (939)
                      +||+       +|+||++.                     +|+|+++++||+.||+.+                      
T Consensus        79 ~~p~~~~~~~l~Cvgn~~~~~~~~~~~~G~~w~~g~i~~~~W~Gv~L~dlL~~ag~~~~a~~~~~v~~~g~d~~~~~~~y  158 (249)
T d2a9da2          79 RFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHVCFEGLDADPGGAPY  158 (249)
T ss_dssp             HSCCEEEEEEEECTTTTHHHHHTTSCCSSCCCCTTSEEEEEEEEEEHHHHHHHTTCCSCCSSCCEEEEEEEEECTTCCEE
T ss_pred             hCCCEEEEEEEEecccccccccccCCccCccccchhhccccccCccHHHHHHHhCCCccccceEEEEecccccCCCCcce
Confidence            7999       99999763                     488899999999999752                      


Q ss_pred             CCCcchhhhcCC-------CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccccCCCccCCCCCCC
Q psy11686        211 PVRSPLLKATSL-------KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQNDYKGFSPSTDWD  276 (939)
Q Consensus       211 ~~~ipl~~a~~~-------~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~~~Y~~~~~~~~~~  276 (939)
                      .+||||++||++       |+|||||||++ ||||||||||      ||||++|+|++++++||||++||+.+.|.++.+
T Consensus       159 ~~slpl~~al~~~~d~lLA~~mNGepLp~~hG~PlRLvvPg~yG~ksvKWl~~Ie~~~~~~~g~we~~gY~~~~p~~~~~  238 (249)
T d2a9da2         159 GASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWD  238 (249)
T ss_dssp             EEEEEHHHHHCGGGCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCCHHHHSSSCCCCTTCCTT
T ss_pred             eeeeEHHHhcCcccceEEEeccCCccCcHHhCceeEEEccceeeeecceeeeEEEEEccCCCCceeeCCccccCCCCCcc
Confidence            135999999974       99999999999 9999999999      999999999999999999999999999999988


Q ss_pred             CccCCCCCCcc
Q psy11686        277 TVDFAKSPAIQ  287 (939)
Q Consensus       277 ~~~~~~~~~i~  287 (939)
                      .++|...++||
T Consensus       239 ~~d~~~~p~~~  249 (249)
T d2a9da2         239 TVDYRTAPAIQ  249 (249)
T ss_dssp             TCCGGGSCCCC
T ss_pred             cCccccCCCCC
Confidence            88898888876

>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=1.3e-26  Score=218.55  Aligned_cols=123  Identities=55%  Similarity=1.002  Sum_probs=109.9

Q ss_pred             cccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCCCCCCceeEEEeEEEeec
Q psy11686        288 ELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQAPLTRHWGWTLWRATIPV  367 (939)
Q Consensus       288 ~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~~~~~~~~W~~W~~~~~~  367 (939)
                      +|+|||+|+.|.+|+.|+  .++++|+||||+|+|++|+|||||+|||+||++|+|.++..+  ..+.|+|++|+++|++
T Consensus         1 em~v~S~I~~P~~~~~v~--~g~~~v~G~A~sggg~~I~rVEVS~DgG~tW~~A~l~~~~~~--~~~~~~W~~W~~~~~~   76 (123)
T d2a9da1           1 ELPVQSAVTQPRPGAAVP--PGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAP--PGRAWAWALWELTVPV   76 (123)
T ss_dssp             BCCCEEEEEESCTTCEEC--SEEEEEEEEEECSTTCCEEEEEEESBSSSSCEECEECSCCCC--TTCCCSCEEEEEEEEE
T ss_pred             CCCCCEEEeccCCCCEec--CCeEEEEEEEEcCCCceEEEEEEEcCCCCccEEeEecCccCC--CCceeEEEEEEEEEEc
Confidence            689999999999999998  579999999999989999999999999999999999987643  4568999999999999


Q ss_pred             CCCCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceee
Q psy11686        368 DPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVG  447 (939)
Q Consensus       368 ~~~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~  447 (939)
                      ++++.                                                                           
T Consensus        77 ~~~~~---------------------------------------------------------------------------   81 (123)
T d2a9da1          77 EAGTE---------------------------------------------------------------------------   81 (123)
T ss_dssp             CTTCE---------------------------------------------------------------------------
T ss_pred             CCCCe---------------------------------------------------------------------------
Confidence            87652                                                                           


Q ss_pred             eeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCCCCCCCCcceeecceeeEEEEEEec
Q psy11686        448 NATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEIWS  522 (939)
Q Consensus       448 ~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~~~~g~p~R~vvp~~~~~~~i~~~~  522 (939)
                                                       ++++++|+|..+|.||.....-||+|++..|.||++.|+|.+
T Consensus        82 ---------------------------------~~i~~RA~D~~G~~QP~~~~~~WN~~G~~~n~~~rv~v~V~~  123 (123)
T d2a9da1          82 ---------------------------------LEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSVQD  123 (123)
T ss_dssp             ---------------------------------EEEEEEEEETTCCBCCSCSGGGCCTTCCCCCSCEEEEEEECC
T ss_pred             ---------------------------------EEEEEEEEcCCCCcCCCccccccccCCcccCceEEEEEEEEC
Confidence                                             455689999999999987766799999999999999999864

>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.1e-27  Score=253.81  Aligned_cols=128  Identities=22%  Similarity=0.342  Sum_probs=108.8

Q ss_pred             ccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCC-------CCc---C
Q psy11686        403 FAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPD-------QSL---D  472 (939)
Q Consensus       403 f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~-------~~~---~  472 (939)
                      |+++||++||+++++++|||+||+|+++...+++.|.+|++||||||+||||+|+|||++||++..       +.+   +
T Consensus        78 ltl~dL~~~p~~~~~~~l~C~gN~r~~~~~~~~~~g~~W~~gai~~a~WtGv~L~dlL~~aGv~~~~~~~~~~a~~v~f~  157 (261)
T d1ogpa2          78 LFIKDIRSLPKYNVTATLQCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFV  157 (261)
T ss_dssp             EEHHHHHTSCEEEEEEEEECTTTTHHHHHHHSCCCSCCCCSCCEEEEEEEEEEHHHHHHTTTCCTTCSCCTTCCCEEEEE
T ss_pred             cCHHHHhcCCCEEEEEEEEecccchhcccccccccccCccccccccceEEeeEHHHHHHHhCCccccccccCCceEEEEE
Confidence            556666677899999999999999999988889999999999999999999999999999999754       222   4


Q ss_pred             CCCC--------ceeeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCceee
Q psy11686        473 SADV--------QHVHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDSSYN  530 (939)
Q Consensus       473 g~d~--------~~~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~~y~  530 (939)
                      |.|.        ..+++++ ++||++        +||||||+++||||||+|||||+|      ..+|+|.++++...|+
T Consensus       158 g~D~~~~~~~~~y~~sipl-~~al~~~~dvlLA~~mNGepLp~~hG~PlRLvVPg~~G~~svKWl~~I~v~d~~~~g~w~  236 (261)
T d1ogpa2         158 SVDRCKEENGGPYKASITL-SQATNPEADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFM  236 (261)
T ss_dssp             ESCCCGGGTTCCCEEEEEH-HHHHCGGGCCEEEEEETTEECCTTTTTTCEEECTTSCGGGSCCSEEEEEEESSCCCCHHH
T ss_pred             ecccccccCCCCceeEEEH-HHhhCcccceEEEEeeCCcccccccCCcEEEEccCceeeeCceEeeEEEEEecCCCCcce
Confidence            5552        3478888 899874        899999999999999999999985      4699999999855554


Q ss_pred             c
Q psy11686        531 T  531 (939)
Q Consensus       531 ~  531 (939)
                      .
T Consensus       237 ~  237 (261)
T d1ogpa2         237 Q  237 (261)
T ss_dssp             H
T ss_pred             e
Confidence            3

>d1xdya_ d.176.1.1 (A:) Bacterial sulfite oxidase YedY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Bacterial sulfite oxidase YedY
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4.5e-28  Score=257.47  Aligned_cols=135  Identities=11%  Similarity=0.052  Sum_probs=114.2

Q ss_pred             EEEEEeecccCCcceeeeHHHHHHhccc-------eeccccCc--cCccccHHHHHhCCCCCC-----------------
Q psy11686        157 STITLDQAIVSKQLSSFKHSDEKLKLVK-------VMAGNISQ--EDSKLAAKDIASDPYVME-----------------  210 (939)
Q Consensus       157 w~l~v~~G~v~~~p~~~t~~dl~~~~p~-------~C~gn~~~--~~~~~~~~~vL~~~g~~d-----------------  210 (939)
                      |+|+|+ |+|++ |++||++||++++|+       +|++||+.  .|+|+++++||+.+|+..                 
T Consensus        51 W~L~V~-GlV~~-P~~ltl~dL~~~~p~~e~~~~l~Cv~~ws~~~~W~Gv~L~~lL~~a~~~~~A~~v~~~~~~~~~~~~  128 (269)
T d1xdya_          51 WTLKIS-GEVAK-PLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMP  128 (269)
T ss_dssp             CEEEEE-ESBSS-CEEEEHHHHHHTSCCEEEEEEEEETTTEEEEEEEEEEEHHHHHHHHCBCTTCCEEEEEECCCTTTCG
T ss_pred             eEEEEE-eeeCC-CcccCHHHHhhcCCcEEEEEeeecccCceeeeeecCcCHHHHHHhcCCCCCCcEEEEEEeccccccc
Confidence            999999 99998 999999999867887       99999885  899999999999988641                 


Q ss_pred             -------------CC--CcchhhhcCC-----CCCCCCCCCCC-CCCceEeeCC------cceeeeEEEeecCCCCcccc
Q psy11686        211 -------------PV--RSPLLKATSL-----KPYNAEPPPSM-LYSSLLRIPF------CSHTGKVILSDHESTSHWQQ  263 (939)
Q Consensus       211 -------------~~--~ipl~~a~~~-----~~mNGepLp~~-G~PlRlvvPg------vKWl~~I~~~~~~~~g~w~~  263 (939)
                                   ++  ||||++||++     |+|||||||++ ||||||||||      ||||++|+|++++.+||||+
T Consensus       129 ~~~~~~~~~~~~~~Y~~slpl~~a~~~~~lLA~~mNGepLp~~HG~PlRLVVPg~yG~ksvKWl~~I~~~~~~~~g~We~  208 (269)
T d1xdya_         129 GQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNL  208 (269)
T ss_dssp             GGTCTTTTTTCCSSCEEEEEHHHHHSTTCEEEEEETTEECCGGGTCSCEEECTTBCGGGSCCSEEEEEEESSCCCCHHHH
T ss_pred             ccccccccCccccceeccccHHHhcCcceeeeeecCCeECchhcCCceEEEcchhhhhcccceeEEEEEEcCCCcchhhh
Confidence                         12  5999999998     99999999999 9999999999      99999999999999999999


Q ss_pred             cCCCccCCCCCCCCccCCCCCCcccccceEEEE
Q psy11686        264 NDYKGFSPSTDWDTVDFAKSPAIQELPVISAIC  296 (939)
Q Consensus       264 ~~Y~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~  296 (939)
                      ++|+..+...+.++  | ...+-|++...++|.
T Consensus       209 ~~~~~~g~~~~~~P--~-~~~p~ws~~~e~~ig  238 (269)
T d1xdya_         209 AAPDEYGFYANVNP--Y-VDHPRWSQATERFIG  238 (269)
T ss_dssp             HCTTTCCSSCBCCT--T-SCBTTBCCSEEEECC
T ss_pred             hCccccCCCccCCC--C-CCCcccccchhhhcc
Confidence            99988765433222  1 123456666666663

>d2a9da2 d.176.1.1 (A:95-343) Sulfite oxidase, middle catalytic domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Sulfite oxidase, middle catalytic domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=2e-26  Score=242.62  Aligned_cols=129  Identities=25%  Similarity=0.366  Sum_probs=110.9

Q ss_pred             cccHHHHhh-ccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCCc------CCC
Q psy11686        402 MFAEEKVRT-FNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQSL------DSA  474 (939)
Q Consensus       402 ~f~~~~l~~-~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~~------~g~  474 (939)
                      .|+++||++ ||+++++++++|+||+|+++..++++.|.+|+.|+|||++|+||+|+|||++||+++.++.      +|.
T Consensus        70 ~ltl~dL~a~~p~~~~~~~l~Cvgn~~~~~~~~~~~~G~~w~~g~i~~~~W~Gv~L~dlL~~ag~~~~a~~~~~v~~~g~  149 (249)
T d2a9da2          70 SLSLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHVCFEGL  149 (249)
T ss_dssp             EEEHHHHHHHSCCEEEEEEEECTTTTHHHHHTTSCCSSCCCCTTSEEEEEEEEEEHHHHHHHTTCCSCCSSCCEEEEEEE
T ss_pred             eeEHHHHHhhCCCEEEEEEEEecccccccccccCCccCccccchhhccccccCccHHHHHHHhCCCccccceEEEEeccc
Confidence            355666653 7899999999999999999888899999999999999999999999999999999987763      454


Q ss_pred             CC------ceeeEEeeeeeccc--------CCCCCCCCCCCCCCcceeecceee------EEEEEEecCCcCceeec
Q psy11686        475 DV------QHVHVEIWSKAVDS--------SYNTQPESFANIWNLRGVLSNAYH------RVRVEIWSKAVDSSYNT  531 (939)
Q Consensus       475 d~------~~~~~~~~~~a~d~--------~~Ng~pl~~~~g~p~R~vvp~~~~------~~~i~~~~~~~~~~y~~  531 (939)
                      |.      -.+++++ ++||++        +||||||+++||||||+||||+||      ..+|++.++++...|+.
T Consensus       150 d~~~~~~~y~~slpl-~~al~~~~d~lLA~~mNGepLp~~hG~PlRLvvPg~yG~ksvKWl~~Ie~~~~~~~g~we~  225 (249)
T d2a9da2         150 DADPGGAPYGASIPY-GRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQ  225 (249)
T ss_dssp             EECTTCCEEEEEEEH-HHHHCGGGCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCCHHHH
T ss_pred             ccCCCCcceeeeeEH-HHhcCcccceEEEeccCCccCcHHhCceeEEEccceeeeecceeeeEEEEEccCCCCceee
Confidence            43      3478887 888874        899999999999999999999984      46999999998766665

>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Molybdenum-containing oxidoreductases-like dimerisation domain
domain: Sulfite oxidase, C-terminal domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=2e-24  Score=204.92  Aligned_cols=121  Identities=42%  Similarity=0.784  Sum_probs=103.1

Q ss_pred             cccceEEEEecCCCCeeccCCcEEEEEEEEEcCCCCceEEEEEEeCCCCCeEEeeeCCCCCCC-----CCCCceeEEEeE
Q psy11686        288 ELPVISAICLPVADAKLKLENHQMEVQGYAWSGGGKAIVRVDVTIDQGRTWHVANFTGQDSQA-----PLTRHWGWTLWR  362 (939)
Q Consensus       288 ~~~v~S~I~~P~~~~~~~~~~~~~~i~G~A~~g~g~~I~rVevS~DgG~tW~~A~l~~~~~~~-----~~~~~~~W~~W~  362 (939)
                      +|||||+|+.|.+++.|+  .|+++|+||||||+|++|+|||||+|||+||++|+|..+..+.     .....|+|++|+
T Consensus         1 e~~v~S~I~~P~~~~~v~--~g~~~i~G~A~sGgg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~w~W~~~~   78 (127)
T d1ogpa1           1 DFPVQSAICSVEDVQMVK--PGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFE   78 (127)
T ss_dssp             SCCCEEEECSSCSEEEEC--SEEEEEEEEEECSTTCCEEEEEEESSTTSSCEECEEESSSSSCCCSSSTTSCTTSCEEEE
T ss_pred             CCCcCEEEecCCCCCEec--CceEEEEEEEEcCCCceEEEEEEEeCCCCccEEeeccCCccccccccccCCcccEEEEEE
Confidence            689999999999999998  5799999999999999999999999999999999999876542     123457888888


Q ss_pred             EEeecCCCCceeeeeecccCCCCCCcccccccChHHHhhcccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcc
Q psy11686        363 ATIPVDPKTKEVSIMDMLMGKKPHDIDFATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWG  442 (939)
Q Consensus       363 ~~~~~~~~~~~vra~d~~~~~~p~~~d~~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~  442 (939)
                      ++++.+ +.                                                                       
T Consensus        79 ~~~~~~-g~-----------------------------------------------------------------------   86 (127)
T d1ogpa1          79 ATIDVS-QT-----------------------------------------------------------------------   86 (127)
T ss_dssp             EEEEES-SC-----------------------------------------------------------------------
T ss_pred             EEecCC-Cc-----------------------------------------------------------------------
Confidence            887652 22                                                                       


Q ss_pred             cceeeeeeeccccHHHHHHHcCCCCCCCcCCCCCceeeEEeeeeecccCCCCCCCCCCCCCCcceeecceeeEEEEEE
Q psy11686        443 HAAVGNATWTGARLVDVLKAAGISPDQSLDSADVQHVHVEIWSKAVDSSYNTQPESFANIWNLRGVLSNAYHRVRVEI  520 (939)
Q Consensus       443 ~gav~~a~W~Gv~L~~vL~~~gv~~~~~~~g~d~~~~~~~~~~~a~d~~~Ng~pl~~~~g~p~R~vvp~~~~~~~i~~  520 (939)
                                                            .+++++|+|..+|.||....+-||+|+++.|.||+++|+|
T Consensus        87 --------------------------------------~~i~~RA~D~~g~~QP~~~~~~WN~~G~~~N~~~rV~v~V  126 (127)
T d1ogpa1          87 --------------------------------------TEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLRL  126 (127)
T ss_dssp             --------------------------------------EEEEEEEEETTCCBCCSCHHHHCCTTCCCCCCCEEEEEEE
T ss_pred             --------------------------------------eEEEEEEECCCCCCCCCccccCcccCCccccceEEEEEEe
Confidence                                                  4456899999999999877677999999999999999987

>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Sulfite oxidase, N-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.85  E-value=2.5e-22  Score=179.74  Aligned_cols=85  Identities=40%  Similarity=0.934  Sum_probs=77.4

Q ss_pred             CCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccccc
Q psy11686         19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNI   97 (939)
Q Consensus        19 ~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~l   97 (939)
                      ++|.||++||++||+++++|||+|+|+|||||+|+..|||| ..|+.++|+|++.+|+.+..||+..++++|++|+||.|
T Consensus         1 slP~~T~~Ev~~H~~~~~~~Wiii~g~VYDvT~f~~~HPGG~~~i~~~~G~D~t~~~~~~~~~~~~~a~~~l~~~~IG~l   80 (91)
T d1soxa2           1 SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVLELLQQYKVGEL   80 (91)
T ss_dssp             CCCEECHHHHTTCEETTTEEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSBSHHHHHHSGGGGSHHHHHHHHTTEEEEE
T ss_pred             CCCccCHHHHHHhCCCCCceEEEECCEEEeccceecccCCcHHHHHHHcCCcccHhHhhccccCcHHHHHHHHcCeeEEe
Confidence            47899999999999876569999999999999999999999 88999999999999987778899999999999999999


Q ss_pred             Cccchh
Q psy11686         98 SQEDSK  103 (939)
Q Consensus        98 ~~~~~~  103 (939)
                      .+++..
T Consensus        81 ~~~~~~   86 (91)
T d1soxa2          81 SPDEAP   86 (91)
T ss_dssp             CCCCCC
T ss_pred             cCccCC
Confidence            877643

>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.84  E-value=4.2e-22  Score=191.57  Aligned_cols=97  Identities=18%  Similarity=0.151  Sum_probs=72.7

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCceeee---e-EEEEEcCeeeccccceecccccccCCCCcc
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSMPI---P-FTLLFSANFFRNLARITTLRIDVTTDGRHA  912 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~eitt~R~e~~~~~r~~  912 (939)
                      |+|||||||+|| ++++|+||+|++.|.++.+.+...........   + +++..++..+    ||+++|.|.|..+++.
T Consensus        14 ylVGG~VRD~llg~~~~DiDi~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----ei~~~R~e~~~~~~~~   89 (136)
T d1vfga2          14 YIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKL----EFATARRETYPRPGAY   89 (136)
T ss_dssp             EEETHHHHHHHTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEE----EEEECCSCC-------
T ss_pred             EEEchHHHHHHcCCCCCCccEEEeeeecchhhhhhhccccccccccccccceeeeccchh----eehhceeccccccccC
Confidence            999999999999 89999999999999887755543321222211   2 6777788888    9999999999766665


Q ss_pred             ccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        913 EVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       913 ~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      +.++..+|++||+||||||||||+++
T Consensus        90 ~~~~~~~i~eDl~RRDFTiNAma~~~  115 (136)
T d1vfga2          90 PKVEPASLKEDLIRRDFTINAMAISV  115 (136)
T ss_dssp             --CCCCCHHHHHHTSSBGGGSCEEEC
T ss_pred             ceeeeehhhhhhhhcccchhheeecc
Confidence            66677899999999999999999986

>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=1.4e-21  Score=173.69  Aligned_cols=83  Identities=31%  Similarity=0.687  Sum_probs=75.7

Q ss_pred             CCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCcccc
Q psy11686         18 STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGN   96 (939)
Q Consensus        18 ~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~   96 (939)
                      +.+++||++||++||+. ++|||+|+|+|||||+|+..|||| +.|+.++|+|++..|.  ..||+..|+++|++|+||.
T Consensus         2 ~~~k~yt~~Ev~~H~~~-~d~Wvii~g~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~F~--~~~hs~~a~~~l~~~~IG~   78 (88)
T d1cyoa_           2 KAVKYYTLEEIQKHNNS-KSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFE--DVGHSTDARELSKTFIIGE   78 (88)
T ss_dssp             CSCCEECHHHHTTCEET-TEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHH--HTTCCHHHHHHHTTTEEEE
T ss_pred             CccccccHHHHHhhCCC-CCeEEEECCEEEecchhhcccCCchHHHHHHcCCchHHHHH--HHCCCHHHHHHHHcCccEE
Confidence            56799999999999987 599999999999999999999999 8899999998888884  5689999999999999999


Q ss_pred             cCccchh
Q psy11686         97 ISQEDSK  103 (939)
Q Consensus        97 l~~~~~~  103 (939)
                      |.++++.
T Consensus        79 l~~~~~~   85 (88)
T d1cyoa_          79 LHPDDRS   85 (88)
T ss_dssp             ECGGGGG
T ss_pred             ECccccC
Confidence            9887754

>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.7e-21  Score=172.25  Aligned_cols=82  Identities=29%  Similarity=0.651  Sum_probs=74.7

Q ss_pred             CCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCcccc
Q psy11686         18 STLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGN   96 (939)
Q Consensus        18 ~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~   96 (939)
                      +.++.||++||++||++ ++|||+|+|+|||||+|+..|||| +.|+.++|+|++..|.  ..||+..++++|++|+||.
T Consensus         2 p~~~~yt~~Ev~~H~~~-~d~Wvii~g~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~f~--~~hhs~~a~~~l~~~~IG~   78 (86)
T d1euea_           2 PAVTYYRLEEVAKRNTA-EETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFE--DIGHSPDAREMLKQYYIGD   78 (86)
T ss_dssp             CSCCEECHHHHTTCEET-TEEEEEETTEEEECGGGGGGCTTCSHHHHTTTTSBCHHHHH--HHTCCHHHHHHGGGGEEEE
T ss_pred             CCCCEECHHHHHhhCCC-CCEEEEECCEEEecceeeeccCcchHHHHHHCCcCHHHHHH--HhCCCHHHHHHHHhCcceE
Confidence            56889999999999987 599999999999999999999999 8888999998888885  4589999999999999999


Q ss_pred             cCccch
Q psy11686         97 ISQEDS  102 (939)
Q Consensus        97 l~~~~~  102 (939)
                      |++++.
T Consensus        79 l~~~~~   84 (86)
T d1euea_          79 VHPNDL   84 (86)
T ss_dssp             ECGGGC
T ss_pred             ECcccC
Confidence            987764

>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Sulfite oxidase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-21  Score=170.22  Aligned_cols=79  Identities=46%  Similarity=0.933  Sum_probs=71.6

Q ss_pred             CCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCCChHHHHHHhhcCccccc
Q psy11686         19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVHLQDEVFELLESYRIGNI   97 (939)
Q Consensus        19 ~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~hs~~a~~~l~~~~VG~l   97 (939)
                      +.+.||++||++|++++++|||+|+|+|||||+|++.|||| +.|+.++|+|++.+|+.+..||+..++++|++|+||+|
T Consensus         1 s~~v~T~~Ev~~H~~~~~~~Wiii~g~VYDvT~f~~~HPGG~~~i~~~~G~D~t~~~~~~~~h~s~~a~~~l~~~~IG~L   80 (80)
T d1mj4a_           1 STHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVRELLAQYKIGEL   80 (80)
T ss_dssp             CCCBCCCC-CTTCEETTTEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSBSHHHHTTCGGGCSHHHHHHHHTTEEEEC
T ss_pred             CCccccHHHHHHhCCCCCCeEEEECCEEEeeeeeHhhcCChhHHHHHHcCCCcchhhhcccccCcHHHHHHHHcCcceeC
Confidence            35789999999999865679999999999999999999999 78999999999998877778899999999999999986

>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b558
species: Ectothiorhodospira vacuolata [TaxId: 1054]

Probab=99.81  E-value=8.3e-21  Score=166.07  Aligned_cols=78  Identities=27%  Similarity=0.547  Sum_probs=70.2

Q ss_pred             CCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccC--CCChHHHHHHhhcCccc
Q psy11686         19 TLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYG--VHLQDEVFELLESYRIG   95 (939)
Q Consensus        19 ~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~--~~hs~~a~~~l~~~~VG   95 (939)
                      ++|.||++||++||++ ++|||+|+|+|||||+|++.|||| +.|+.++|+|++..|+...  ..||..|+++|++|+||
T Consensus         1 slp~~t~~ev~~H~~~-~d~Wivi~g~VYDvT~f~~~HPGG~~~l~~~aGkD~t~~F~~~~~~~~Hs~~a~~~L~~~~IG   79 (81)
T d1cxya_           1 TLPVFTLEQVAEHHSP-DDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLIG   79 (81)
T ss_dssp             CCCBCCHHHHTTCEET-TEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHHHTTTTCCCCHHHHHHHHHTEEE
T ss_pred             CcCccCHHHHHhhCCC-CCEEEEECCEEEeccceeecCCCcHHHHHHHcCCcchHHHHhcCCcccCCHHHHHHHHhCCCe
Confidence            4789999999999998 499999999999999999999999 8899999999888886433  33899999999999999


Q ss_pred             cc
Q psy11686         96 NI   97 (939)
Q Consensus        96 ~l   97 (939)
                      +|
T Consensus        80 ~L   81 (81)
T d1cxya_          80 TL   81 (81)
T ss_dssp             EC
T ss_pred             eC
Confidence            86

>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: tRNA CCA-adding enzyme, head domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.80  E-value=1.4e-20  Score=181.69  Aligned_cols=95  Identities=17%  Similarity=0.264  Sum_probs=73.9

Q ss_pred             hhhcCcchhhhc-CCCCcEEEecCCCHHHHHHHhhhcCCCcee-eee-EEEEEcCeeeccccceecccccccC-CCCc-c
Q psy11686        838 KILGGSFSKEMM-LKMLEINMFPHLGTDETFATLDFEGLFRSM-PIP-FTLLFSANFFRNLARITTLRIDVTT-DGRH-A  912 (939)
Q Consensus       838 ~iVGG~VRD~LL-~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~eitt~R~e~~~-~~r~-~  912 (939)
                      |+|||||||+|| ++++|+||+|++.|+++.+++....  ... ..+ +++..++..+    +++++|.+.++ +.++ .
T Consensus        23 ylVGG~VRD~LLg~~~~DiDi~v~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~   96 (139)
T d1miwa2          23 YFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFPKTI--DVGSKHGTVVVVHKGKAY----EVTTFKTDGDYEDYRRPE   96 (139)
T ss_dssp             EEESHHHHHHHHTCCCCCCEEEESSCHHHHHHHCSSEE--EEEGGGTEEEEEETTEEE----EEEECEECC---------
T ss_pred             EEEcHHHHHHHcCCCCCCceEEecCChHHHhhhccccc--ccCceeeEEEEEEeccee----eEEEEeeccccccccccc
Confidence            999999999999 8999999999999999988775321  111 112 6667788888    99999999773 4444 6


Q ss_pred             ccccCCCHHHHhhcCCchhhhcCccC
Q psy11686        913 EVQFTEDWKLDANRRDLTVNSMFLGM  938 (939)
Q Consensus       913 ~v~~~~~l~~Dl~RRDFTINAma~~l  938 (939)
                      .+.+..+|++||+||||||||||+|.
T Consensus        97 ~~~~~~~i~eDl~RRDFTINAma~~~  122 (139)
T d1miwa2          97 SVTFVRSLEEDLKRRDFTMNAIAMDE  122 (139)
T ss_dssp             CCEECSCHHHHHHTSSBSGGGCEECT
T ss_pred             eeeecCchhhhhhcCCcceeeEEECC
Confidence            67788899999999999999999984

>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: tRNA CCA-adding enzyme, C-terminal domains
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.79  E-value=1.6e-20  Score=198.97  Aligned_cols=143  Identities=23%  Similarity=0.260  Sum_probs=106.2

Q ss_pred             cccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q psy11686        666 VCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKML  745 (939)
Q Consensus       666 ~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~  745 (939)
                      +||+||+|.+||.|||||||||+|||+||||+   |+++|.+||++++..|..+|+|||+.||.|||.++++...+..|.
T Consensus         1 iiR~vg~p~~rf~EDpLRiLRa~RFa~rl~f~---i~~~t~~ai~~~~~~l~~vS~ERI~~El~kil~~~~~~~~l~~l~   77 (265)
T d1miwa1           1 IIRTVGEAEKRFREDALRMMRAVRFVSELGFA---LAPDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLA   77 (265)
T ss_dssp             EECBSSCHHHHHHHCTHHHHHHHHHHHHHCCE---ECHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred             CeeeCCCHHHhccccHHHHHHHHHHHHHhCCC---ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence            58999999999999999999999999999997   999999999999999999999999999999999999888877666


Q ss_pred             HhcCc-ccccccchhhHHHHHHHHHHHhhhhhhhcccceeeccCCCChhHHHHHHHHHhCCCCCchhhHHH
Q psy11686        746 YQNLL-LFSKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEVLS  815 (939)
Q Consensus       746 ~~~~l-lfp~l~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~f~~RL~l~~~~~r~~ll~  815 (939)
                      +.+++ ++|++........   ................|.+.+..++......++.++.++. +....+..
T Consensus        78 ~~gl~~~lp~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk~s~-~~~~~~~~  144 (265)
T d1miwa1          78 ETGLNAYLPGLAGKEKQLR---LAAAYRWPWLAAREERWALLCHALGVQESRPFLRAWKLPN-KVVDEAGA  144 (265)
T ss_dssp             HSTTTTSSTTCSSCHHHHH---HGGGSCGGGCCSHHHHHHHHHHHHTCSCHHHHHHHTTCCH-HHHHHHHH
T ss_pred             HCChHHhCccccchhhHHH---HHHHhhcccccchHHHHHHHHHhhhHHHHHHHHHhcCCCH-HHHHHHHH
Confidence            66644 5787765432211   1111111222222334555544445566778888888887 44444433

>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.77  E-value=1.5e-19  Score=186.22  Aligned_cols=136  Identities=14%  Similarity=0.113  Sum_probs=106.4

Q ss_pred             cccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhh--hhcCCCHHHHHHHHHHHHcCCChHHHHHH
Q psy11686        666 VCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLD--GLHNISGERIWTELNKILGGSFSKEMMLK  743 (939)
Q Consensus       666 ~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~--~l~~vs~eRi~~El~kil~~~~~~~~~~~  743 (939)
                      +||++|+.  ||.|||||||||+||++||||+   |+++|.++|++++.  .+..+|+|||+.|+.|||.++++..++..
T Consensus         1 vlR~l~~~--sF~EDPlRiLRa~RF~ar~gf~---i~~~T~~~i~~~~~~~~l~~ls~eRI~~E~~kil~~~~~~~~l~~   75 (215)
T d1vfga1           1 VIRVLHPV--SFIEDPVRILRALRFAGRLNFK---LSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILEL   75 (215)
T ss_dssp             EECBSSTT--HHHHCTTHHHHHHHHHHHHTCE---ECHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred             CeeeCCCC--CccccHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhcchHHHHHHH
Confidence            58999984  9999999999999999999997   99999999999654  69999999999999999999998888777


Q ss_pred             HHHhcCc--ccccccchhh----HHHHHHHHHHHhhhhhhhcccceeec----cCCCChhHHHHHHHHHhCCC
Q psy11686        744 MLYQNLL--LFSKLKATTM----REYIVELMKYKEKSELIKDFHKWRLP----TFPMNGNIIRQFFARICNNP  806 (939)
Q Consensus       744 l~~~~~l--lfp~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~w~~~----~~~l~~~~l~~f~~RL~l~~  806 (939)
                      |.+.+++  +||++.....    ...+...+.|............|.++    ...++......++.++.++.
T Consensus        76 l~~~~ll~~l~p~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~l~~  148 (215)
T d1vfga1          76 YRKYRVLEEIIEGFQWNEKVLQKLYALRKVVDWHALEFSEERIDYGWLYLLILISNLDYERGKHFLEEMSAPS  148 (215)
T ss_dssp             HHHTTCHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHCSCCSSTTHHHHHHTTCCH
T ss_pred             HHHhChHHHHCcccccchhHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHhhcChHHHHHHHHhcCCCH
Confidence            7777766  7999987552    23445555565544444444445444    44555667788888888777

>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: tRNA CCA-adding enzyme, C-terminal domains
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.77  E-value=6.5e-19  Score=180.82  Aligned_cols=141  Identities=33%  Similarity=0.454  Sum_probs=99.6

Q ss_pred             cccccCCccccchhchhhHHHHHHHHHHhCCCCCCChHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q psy11686        666 VCAFVGDPVSRIQEDYLRILRYFRFFARICNNPNNHKEEVLSAIKNNLDGLHNISGERIWTELNKILGGSFSKEMMLKML  745 (939)
Q Consensus       666 ~iR~v~~~~~~f~EDPlRilRa~RFaarlgf~~~~i~~~t~~ai~~~~~~l~~vs~eRi~~El~kil~~~~~~~~~~~l~  745 (939)
                      +||+||+|.+||.|||||||||+||+++||+..+.++++|.++|++++..|..+|+|||+.|+.|||.++++...+..|.
T Consensus         1 kvr~VGdp~~Rf~ED~LRILR~~RF~~~~~~~~f~id~~t~~ai~~~~~~L~~lS~ERI~~El~Kil~~~~~~~~l~~m~   80 (204)
T d1ou5a1           1 KVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIY   80 (204)
T ss_dssp             CCCBSSTTTTTSSSCTTHHHHHHHHHHHSCSSSSCCCHHHHHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred             CeeEeCCHHHhhcchHHHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHhccCcHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            58999999999999999999999999999844335999999999999999999999999999999999999888777666


Q ss_pred             HhcCc--cc-ccccchhhHHHHHHHHHHHhhhhhhhcccceeeccCCCChhHHHHHHHHHhCCCCCchhhH
Q psy11686        746 YQNLL--LF-SKLKATTMREYIVELMKYKEKSELIKDFHKWRLPTFPMNGNIIRQFFARICNNPNNHKEEV  813 (939)
Q Consensus       746 ~~~~l--lf-p~l~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~l~~~~l~~f~~RL~l~~~~~r~~l  813 (939)
                      +.+++  +| |....   ...+..+.+-..... .+.+..|.....  ..+.+..++.|+.++. ..+..+
T Consensus        81 ~~gil~~i~~~~~~~---l~~~~~~~~~~~~~~-~~~~~~La~L~~--~~~~~~~~~~rlklSn-~e~~~~  144 (204)
T d1ou5a1          81 DLDVAPYIGLPANAS---LEEFDKVSKNVDGFS-PKPVTLLASLFK--VQDDVTKLDLRLKIAK-EEKNLG  144 (204)
T ss_dssp             HTTCGGGGTCCCCSC---CHHHHHHHHHHTTSC-CCHHHHHGGGCC--STTTTHHHHHHHCCCT-THHHHH
T ss_pred             HCChHHHhCchhHhh---HHHHHHHHHHHhcCC-CCHHHHHHHHcC--ChhHHHHHHHHhCCCH-HHHHHH
Confidence            66665  43 43322   122222222111111 111222222121  2455678899999888 444443

>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Flavocytochrome b2, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2e-18  Score=155.61  Aligned_cols=82  Identities=23%  Similarity=0.373  Sum_probs=69.0

Q ss_pred             CCCCCCcCHHHHhhccCCCCCeEEEEcCeEeecccchhcCCCc-hHHHHhhcCCchhhhhccCCC-ChHHHHHHhhcCcc
Q psy11686         17 ISTLPWYSLSDIQNHKDLKSSIWVVFRQGVYDITEFVQMHPGG-EIIMKAAGGSIEPFWAMYGVH-LQDEVFELLESYRI   94 (939)
Q Consensus        17 ~~~~~~~t~~ev~~h~~~~~~~wvii~g~VYDvT~f~~~HPGG-~~il~~aG~d~~~~~~~~~~~-hs~~a~~~l~~~~V   94 (939)
                      ..+.+.||++||++||+. ++|||+|+|+|||||+|+..|||| +.|+.++|+|+|..|+..  | |+..++.+|++|+|
T Consensus         5 ~~~~~~it~~EV~~H~~~-~d~Wvvi~g~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~f~~~--H~~~~~~~~~l~~~~I   81 (97)
T d1kbia2           5 DMNKQKISPAEVAKHNKP-DDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL--HAPNVIDKYIAPEKKL   81 (97)
T ss_dssp             CSCSCCBCTTHHHHCEET-TEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHHHHGGG--SCTTHHHHHSCGGGEE
T ss_pred             CCCcCccCHHHHHHhCCC-CCEEEEECCEEEecchhhhhCCChHHHHHHHcCccHHHHHHHH--CcHHHHHHHHhhccee
Confidence            346688999999999987 599999999999999999999999 888899999999888543  3 23444557899999


Q ss_pred             cccCccc
Q psy11686         95 GNISQED  101 (939)
Q Consensus        95 G~l~~~~  101 (939)
                      |.|.+..
T Consensus        82 G~l~~~~   88 (97)
T d1kbia2          82 GPLQGSM   88 (97)
T ss_dssp             EEBCSCC
T ss_pred             EEeCCCC
Confidence            9997654

>d1xdya_ d.176.1.1 (A:) Bacterial sulfite oxidase YedY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Oxidoreductase molybdopterin-binding domain
superfamily: Oxidoreductase molybdopterin-binding domain
family: Oxidoreductase molybdopterin-binding domain
domain: Bacterial sulfite oxidase YedY
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.7e-18  Score=183.27  Aligned_cols=137  Identities=14%  Similarity=0.135  Sum_probs=102.4

Q ss_pred             ccccChHHHhhcccHHHHhhccccCcceeeccCCCCCCCccccCCCCCCCcccceeeeeeeccccHHHHHHHcCCCCCCC
Q psy11686        391 ATNATPDQMKAMFAEEKVRTFNEKGEKHGTVCARMNDKENFEVKPVKGLTWGHAAVGNATWTGARLVDVLKAAGISPDQS  470 (939)
Q Consensus       391 ~~~~~~~~l~~~f~~~~l~~~p~~~~~~~l~Cagn~r~~~~~~~~~~g~~w~~gav~~a~W~Gv~L~~vL~~~gv~~~~~  470 (939)
                      +.++|++||++.        +|+++++++++|++|.                   .+++.|+||+|+++|+.||+++.|+
T Consensus        62 P~~ltl~dL~~~--------~p~~e~~~~l~Cv~~w-------------------s~~~~W~Gv~L~~lL~~a~~~~~A~  114 (269)
T d1xdya_          62 PLTLDHDDLTRR--------FPLEERIYRMRCVEAW-------------------SMVVPWIGFPLHKLLALAEPTSNAK  114 (269)
T ss_dssp             CEEEEHHHHHHT--------SCCEEEEEEEEETTTE-------------------EEEEEEEEEEHHHHHHHHCBCTTCC
T ss_pred             CcccCHHHHhhc--------CCcEEEEEeeecccCc-------------------eeeeeecCcCHHHHHHhcCCCCCCc
Confidence            345666666554        4567888999999873                   2578999999999999999999998


Q ss_pred             c---CCCCC-------------------ceeeEEeeeeeccc------CCCCCCCCCCCCCCcceeecceee------EE
Q psy11686        471 L---DSADV-------------------QHVHVEIWSKAVDS------SYNTQPESFANIWNLRGVLSNAYH------RV  516 (939)
Q Consensus       471 ~---~g~d~-------------------~~~~~~~~~~a~d~------~~Ng~pl~~~~g~p~R~vvp~~~~------~~  516 (939)
                      +   ++.|.                   -.+++++ ++||++      +|||||||++||+|||+||||+||      ..
T Consensus       115 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~slpl-~~a~~~~~lLA~~mNGepLp~~HG~PlRLVVPg~yG~ksvKWl~  193 (269)
T d1xdya_         115 YVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRL-DEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIV  193 (269)
T ss_dssp             EEEEEECCCTTTCGGGTCTTTTTTCCSSCEEEEEH-HHHHSTTCEEEEEETTEECCGGGTCSCEEECTTBCGGGSCCSEE
T ss_pred             EEEEEEecccccccccccccccCccccceeccccH-HHhcCcceeeeeecCCeECchhcCCceEEEcchhhhhcccceeE
Confidence            7   32221                   2378998 999987      899999999999999999999984      46


Q ss_pred             EEEEecCCcCceeec-----C--CCCCCCCCCccccccccceeecC
Q psy11686        517 RVEIWSKAVDSSYNT-----Q--PENGHPSGYQPRATLQGARLLTR  555 (939)
Q Consensus       517 ~i~~~~~~~~~~y~~-----~--~~~~~~~~~~~i~~m~V~SlI~~  555 (939)
                      +|++.+++....|+.     .  -.+.++..-.|.++.+..++|+.
T Consensus       194 ~I~~~~~~~~g~We~~~~~~~g~~~~~~P~~~~p~ws~~~e~~ig~  239 (269)
T d1xdya_         194 SIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGS  239 (269)
T ss_dssp             EEEEESSCCCCHHHHHCTTTCCSSCBCCTTSCBTTBCCSEEEECCC
T ss_pred             EEEEEcCCCcchhhhhCccccCCCccCCCCCCCcccccchhhhccC
Confidence            999999988665543     1  01112223356677777777653

>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.59  E-value=1.1e-16  Score=153.35  Aligned_cols=105  Identities=19%  Similarity=0.170  Sum_probs=78.5

Q ss_pred             ccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeE-EeecccCeEEE-------EE
Q psy11686        543 PRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQ-LRIAGEGTVTA-------KV  613 (939)
Q Consensus       543 ~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~-~~~~~~g~~~~-------~v  613 (939)
                      -+++..||++ |++|+.|+|+++++.+.                ++.+.+..  ..+.. ..+..||++++       ++
T Consensus        14 ylVGG~VRD~llg~~~~DiDi~~~~~~~----------------e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ei   75 (136)
T d1vfga2          14 YIVGGVVRDILLGKEVWDVDFVVEGNAI----------------ELAKELAR--RHGVNVHPFPEFGTAHLKIGKLKLEF   75 (136)
T ss_dssp             EEETHHHHHHHTTCCCSEEEEEESSCHH----------------HHHHHHHH--HHTCCCEEETTTTEEEEEETTEEEEE
T ss_pred             EEEchHHHHHHcCCCCCCccEEEeeeec----------------chhhhhhh--ccccccccccccccceeeeccchhee
Confidence            4677889987 79999999999988777                33322222  22222 34567777654       68


Q ss_pred             EeeccCCCC---------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcC
Q psy11686        614 LSYRNRREK---------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKG  665 (939)
Q Consensus       614 ~tfr~~~~~---------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~  665 (939)
                      +++|.+...         ..++++||.||||||||||++++....|+|+|||||++||++|
T Consensus        76 ~~~R~e~~~~~~~~~~~~~~~i~eDl~RRDFTiNAma~~~~~~~~g~liDp~gG~~DL~~k  136 (136)
T d1vfga2          76 ATARRETYPRPGAYPKVEPASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDK  136 (136)
T ss_dssp             EECCSCC---------CCCCCHHHHHHTSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTT
T ss_pred             hhceeccccccccCceeeeehhhhhhhhcccchhheeeccCcCCCCEEEeCCCCHHHHhcC
Confidence            889875422         2479999999999999999998655568999999999999986

>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: tRNA CCA-adding enzyme, head domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.51  E-value=9.9e-16  Score=147.31  Aligned_cols=99  Identities=19%  Similarity=0.219  Sum_probs=74.6

Q ss_pred             cccccccccee-ecCCCCCCccccCCCCCcccccCCCcccccchhHHHHHHHHHHhhCeEEeecccCeEE-------EEE
Q psy11686        542 QPRATLQGARL-LTRPPNPHSVRFKSGPDGKMKLDSPEFHSCFTPELKRLAGIFEKHGYQLRIAGEGTVT-------AKV  613 (939)
Q Consensus       542 ~~i~~m~V~Sl-I~~P~~D~dI~t~a~~~~~~~~~~~df~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~-------~~v  613 (939)
                      .-+++..||++ +++++.|+|+++.+.++                ++.+++..     ....+..|+++.       .++
T Consensus        22 ~ylVGG~VRD~LLg~~~~DiDi~v~~~~~----------------e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~   80 (139)
T d1miwa2          22 AYFVGGAVRDLLLGRPIGDVDIATSALPE----------------DVMAIFPK-----TIDVGSKHGTVVVVHKGKAYEV   80 (139)
T ss_dssp             EEEESHHHHHHHHTCCCCCCEEEESSCHH----------------HHHHHCSS-----EEEEEGGGTEEEEEETTEEEEE
T ss_pred             EEEEcHHHHHHHcCCCCCCceEEecCChH----------------HHhhhccc-----ccccCceeeEEEEEEecceeeE
Confidence            34678889997 79999999999988777                43333321     123456677654       347


Q ss_pred             EeeccCCCC-----------CCCccCCCcccchhHhhhcccCCCCCCCeEEeCcCcHHHHhcC
Q psy11686        614 LSYRNRREK-----------EDRIGENQPFRKLTLSVQDKDRSFRLDGTVYDYFNGHEDLKKG  665 (939)
Q Consensus       614 ~tfr~~~~~-----------~~~~~~Dl~rRDfTINA~a~~~~~~~~g~liD~~gG~~DL~~~  665 (939)
                      +++|.+..+           ..++++||.||||||||||++.    +|+|+|||||++||++|
T Consensus        81 ~~~r~~~~~~~~~~~~~~~~~~~i~eDl~RRDFTINAma~~~----~g~liDp~~G~~DL~~k  139 (139)
T d1miwa2          81 TTFKTDGDYEDYRRPESVTFVRSLEEDLKRRDFTMNAIAMDE----YGTIIDPFGGREAIRRR  139 (139)
T ss_dssp             EECEECC---------CCEECSCHHHHHHTSSBSGGGCEECT----TCCEECTTCHHHHHHHT
T ss_pred             EEEeeccccccccccceeeecCchhhhhhcCCcceeeEEECC----CCCEEeCCCCHHHHhcC
Confidence            777765321           2489999999999999999984    79999999999999986

>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Steroid-binding domain
domain: Putative steroid binding protein AT2G24940
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.92  E-value=0.00019  Score=64.21  Aligned_cols=57  Identities=18%  Similarity=0.268  Sum_probs=43.8

Q ss_pred             CCCCCcCHHHHhhccCCC--CCeEEEEcCeEeecccchh-cCCCchHHHHhhcCCchhhhh
Q psy11686         18 STLPWYSLSDIQNHKDLK--SSIWVVFRQGVYDITEFVQ-MHPGGEIIMKAAGGSIEPFWA   75 (939)
Q Consensus        18 ~~~~~~t~~ev~~h~~~~--~~~wvii~g~VYDvT~f~~-~HPGG~~il~~aG~d~~~~~~   75 (939)
                      ..++.||.+||+++|..+  ..+||+|+|+|||||.-.. +-|||..- .++|+|++..|.
T Consensus         7 ~~~~~fT~eeL~~ydG~~~~~piyvAi~G~VyDVt~~~~~ygpgg~Y~-~faG~D~sral~   66 (109)
T d1t0ga_           7 HHLEEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYS-MFAGKDASRALG   66 (109)
T ss_dssp             SSSEEEEHHHHTTCSSCSSSCCCEEEETTEEEECGGGTTTSTTTCTTT-TTTTEECHHHHH
T ss_pred             hhhhhCCHHHHHHcCCCCCCccEEEEECCEEEEccCCcceECCCCccc-ccccccHHHHHH
Confidence            567899999999998532  2599999999999996543 45888322 459998887764