Psyllid ID: psy11689

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MPVDLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPTAPQGRETELPFTKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELREGGQRNGGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQRNRSSPKKVSRI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccEEEccccccccccHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHcccccccEEEEEccccccHHHHHHHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccEEEEcccccccHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEcccEEEEEEEccccccccHHHHHHHHHcccccccccccccEEEEEcccccccccEcccccccccccccHHHHHHHcccccccHEEEcccccEEEEEEEEcccccccEEcccccHHHccccccccEEEEEccccccHccHccHHHHHHHHHHHHccccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHccccEEEEccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEHHHHHcHHccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccccHHHHcccccccEEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHHccc
Coil and Loop (DISEMBL)
MPVDLVRVCNTVLMYFAKHRGCTADSLLRHVRSSlshyrpsclkagglgvidlptapqgretelpftklNEEVElsenvqreeegiagenlqrgggeegielreggqrnggeggigLNERVQRIGegreerrdwegeeegafvpelgglkGVRALMEKTVEWPFKYAREFErlaipkpkgillygppgcaktsLVRTLAAHSVYRVLAASAAQlyspyvgeaEQNVTQLFHRARLAAPAILFIDEIERTYNCEYreqtadnakkpriprtnggyreqtadtankpriqRTKREYREQTADTAHKTrisrtnrgyrektadtankpriprtnrgyreysaqnantankpriQRTKREYREQtadtankpriqrignlsqrnrsspkkvsri
Flexible Loop (DISEMBL)
MPVDLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPTAPQGRETELPFTKLNEEVElsenvqreeegiagenlqrgggeegielreggqrnggeggiglnervqRIGEGreerrdwegeeegafvpelgglkGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYreqtadnakkpriprtnggyreqtadtankpriqrtkreyreqtadtahktrisrtnrgyrektadtankpriprtnrgyreysaqnantankpriqrtkreyreqtadtankpriqrignlsqrnrsspkkvsri
Low Complexity Region (SEG)
MPVDLVRVCNTVLMYFAKHRGCTADsllrhvrsslshYRPSCLKAGGLGVIDLPTAPQGRETELPFTKLNEEVELSENVQREEEGIAGENlqrgggeegielreggqrnggeggiglnervqrigegreerrdwegeeegAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQRNRSSPKKVSRI
Disordered region (IsUnstruct)
***DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLP**************************************************************************************AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR***************************************************************************************************************************************
Disordered Region (DISOPRED)
**VDLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPTAPQGRETELPFTKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELR************GLNERVQRIGE**EE**DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIER*******************PRTNGGYREQTADTANKPRIQRTKREYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREY***********RIQ*******************
Disordered Region (DISEMBL)
MPVDLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPTAPQGRETELPFTKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELREGGQRNGGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTK*************TRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNL**************
Disordered Region (DISPRO)
***DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPTAPQGRETELPFTKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELREGGQRNGGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE********AKKPRIPRTNGGYREQTADTANKPRIQRTKREYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNL**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPVDLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPTAPQGRETELPFTKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELREGGQRNGGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQRNRSSPKKVSRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	390	2.2.26 [Sep-21-2011]
Q9BVQ7	753	Spermatogenesis-associate	yes	N/A	0.315	0.163	0.416	4e-28
A7YSY2	767	Spermatogenesis-associate	yes	N/A	0.297	0.151	0.436	3e-27
Q3UMC0	893	Spermatogenesis-associate	no	N/A	0.330	0.144	0.391	5e-23
Q8NB90	893	Spermatogenesis-associate	no	N/A	0.258	0.113	0.446	2e-22
O60058	809	ATPase family gene 2 prot	yes	N/A	0.297	0.143	0.370	2e-20
Q9ZPR1	603	Cell division control pro	yes	N/A	0.3	0.194	0.389	3e-20
P32794	780	ATPase family gene 2 prot	yes	N/A	0.264	0.132	0.407	2e-19
Q0VA52	593	Spermatogenesis-associate	no	N/A	0.220	0.145	0.438	2e-19
Q9LET7	1022	Calmodulin-interacting pr	no	N/A	0.261	0.099	0.417	2e-19
Q8SSJ5	780	Cell division control pro	yes	N/A	0.264	0.132	0.407	6e-19

>sp|Q9BVQ7|SPA5L_HUMAN Spermatogenesis-associated protein 5-like protein 1 OS=Homo sapiens GN=SPATA5L1 PE=1 SV=2

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 87/132 (65%), Gaps = 9/132 (6%)

Query: 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKT 192
           DWE         E+GGL+ V+  +++++EWP K+  EF R+ + +PKG+LLYGPPGCAKT
Sbjct: 462 DWE---------EIGGLEDVKLKLKQSIEWPLKFPWEFVRMGLTQPKGVLLYGPPGCAKT 512

Query: 193 SLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252
           +LVR LA       ++ S A L+SP+VG++E+ ++Q+F +AR + PAILF+DEI+     
Sbjct: 513 TLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQIFRQARASTPAILFLDEIDSILGA 572

Query: 253 EYREQTADNAKK 264
               +T  + ++
Sbjct: 573 RSASKTGCDVQE 584

Homo sapiens (taxid: 9606)

>sp|A7YSY2|SPA5L_BOVIN Spermatogenesis-associated protein 5-like protein 1 OS=Bos taurus GN=SPATA5L1 PE=2 SV=1

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 83/119 (69%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+ V+  +++++EWP K+ REF R+ + +PKG+LLYGPPGCAKT+LVR LA     
Sbjct: 467 QIGGLEDVKLKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCRC 526

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK 263
             ++ S A L+SP+VG++E+ ++Q+F +AR   PAI+F+DEI+         +T  N +
Sbjct: 527 SFVSVSGADLFSPFVGDSEKILSQVFRQARANTPAIVFLDEIDSILGSRSISRTECNVQ 585

Bos taurus (taxid: 9913)

>sp|Q3UMC0|SPAT5_MOUSE Spermatogenesis-associated protein 5 OS=Mus musculus GN=Spata5 PE=2 SV=2

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/138 (39%), Positives = 83/138 (60%), Gaps = 9/138 (6%)

Query: 115 IGLNERVQRIGEGREERRDWEGEEEGAFVP-----ELGGLKGVRALMEKTVEWPFKYARE 169
           I LN+ +Q    G  + R     E    VP     ++GGL+ ++  +++ VEWP K+ + 
Sbjct: 597 ITLNDFLQ----GMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKS 652

Query: 170 FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL 229
           F R+ I  PKG+LLYGPPGC+KT + + LA  S    LA    +L + YVGE+E+ V ++
Sbjct: 653 FNRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREI 712

Query: 230 FHRARLAAPAILFIDEIE 247
           F +AR  AP+I+F DE++
Sbjct: 713 FRKARAVAPSIIFFDELD 730

May be involved in morphological and functional mitochondrial transformations during spermatogenesis.

Mus musculus (taxid: 10090)

>sp|Q8NB90|SPAT5_HUMAN Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1 SV=3

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 69/103 (66%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+ ++  +E+ VEWP K+   F R+ I  PKG+LLYGPPGC+KT + + LA  S  
Sbjct: 628 DIGGLESIKLKLEQAVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALANESGL 687

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             LA    +L + YVGE+E+ V + F +AR  AP+I+F DE++
Sbjct: 688 NFLAIKGPELMNKYVGESERAVRETFRKARAVAPSIIFFDELD 730

May be involved in morphological and functional mitochondrial transformations during spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|O60058|AFG2_SCHPO ATPase family gene 2 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=afg2 PE=3 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 73/116 (62%)

Query: 132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAK 191
           R++  E       ++GG + V+  ++++VEWP  +   F RL +  PKG+LLYGPPGC+K
Sbjct: 536 REFMMESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSK 595

Query: 192 TSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
           T   + +A  +    +A    +L+  +VGE+E+ V Q+F +AR A+P+++F DEI+
Sbjct: 596 TITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEID 651

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 77/118 (65%), Gaps = 1/118 (0%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGLK ++  +++ VEWP K++  F ++ I   +GILL+GPPGC+KT+L +  A  +  
Sbjct: 287 DVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAANAAQA 346

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262
              + S A+L+S YVGE E  +   F RARLA+P+I+F DE +    C+  ++++ N+
Sbjct: 347 SFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEAD-VVACKRGDESSSNS 403

Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion).

Arabidopsis thaliana (taxid: 3702)

>sp|P32794|AFG2_YEAST ATPase family gene 2 protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AFG2 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 69/103 (66%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GG + ++  M++ ++ P + +  F RL I  PKG+LLYGPPGC+KT   + LA  S  
Sbjct: 517 DIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLYGPPGCSKTLTAKALATESGI 576

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             LA    ++++ YVGE+E+ + ++F +AR AAP+I+F DEI+
Sbjct: 577 NFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFDEID 619

Not yet known. Essential for viability.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q0VA52|SPA5L_XENTR Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 61/89 (68%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
            +GGL+ ++  + +++EWP KY   F R+ +  PKG+LLYGPPGCAKT+LV+ +A     
Sbjct: 458 HIGGLEDIKHKLRQSIEWPMKYPEAFSRMGLTPPKGVLLYGPPGCAKTTLVKAVATSCHC 517

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRA 233
              + SAA L+SPYVG++E+ + Q+ +R 
Sbjct: 518 SFFSISAADLFSPYVGDSEKTLAQVSNRC 546

Xenopus tropicalis (taxid: 8364)

>sp|Q9LET7|CI111_ARATH Calmodulin-interacting protein 111 OS=Arabidopsis thaliana GN=CIP111 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 67/103 (65%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GG   V+  + + VEWP K+   F+R+    P GIL++GPPGC+KT + R +A+ +  
Sbjct: 725 DVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAKL 784

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             LA    +L+S +VGE+E+ V  LF +AR  AP+I+F DEI+
Sbjct: 785 NFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEID 827

Arabidopsis thaliana (taxid: 3702)

>sp|Q8SSJ5|CDC48_ENCCU Cell division control protein 48 OS=Encephalitozoon cuniculi (strain GB-M1) GN=CDC48 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 65/103 (63%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+ V+  + +TV++P +Y  +F +  +   KG+L YGPPGC KT L + +A     
Sbjct: 482 DIGGLEQVKQELRETVQYPVEYPEKFIKFGMTPAKGVLFYGPPGCGKTLLAKAVATECKA 541

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             ++    +L S +VGE+E N+  LF RAR AAP +LF DEI+
Sbjct: 542 NFISIKGPELLSMWVGESESNIRDLFARARGAAPCVLFFDEID 584

Involved in spindle disassembly, degradation of ubiquitinated proteins and protein export from the endoplasmic reticulum to the cytoplasm. Acts as a chaperone that collects ubiquitinated substrates. Has a role in the endoplasmic reticulum-associated degradation (ERAD) pathway.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
328708809	734	PREDICTED: putative ribosome biogenesis	0.320	0.170	0.48	2e-30
443693118	736	hypothetical protein CAPTEDRAFT_225462 [	0.328	0.173	0.442	2e-27
443693115	673	hypothetical protein CAPTEDRAFT_225461 [	0.328	0.190	0.442	2e-27
380795353	452	spermatogenesis-associated protein 5-lik	0.315	0.272	0.416	1e-26
410912802	742	PREDICTED: spermatogenesis-associated pr	0.253	0.133	0.524	1e-26
321455602	515	hypothetical protein DAPPUDRAFT_302447 [	0.292	0.221	0.471	1e-26
405966052	686	Spermatogenesis-associated protein 5-lik	0.248	0.141	0.495	1e-26
67969911	177	unnamed protein product [Macaca fascicul	0.271	0.598	0.460	2e-26
348538695	756	PREDICTED: spermatogenesis-associated pr	0.297	0.153	0.453	2e-26
397523093	675	PREDICTED: LOW QUALITY PROTEIN: spermato	0.315	0.182	0.416	2e-26

>gi|328708809|ref|XP_003243803.1| PREDICTED: putative ribosome biogenesis ATPase nvl-like [Acyrthosiphon pisum]

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 85/125 (68%)

Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
           LGGLK V+ +++  ++WP  + + F+  A+P PKG+LLYGPPGC KTSLVR++A+ +   
Sbjct: 461 LGGLKNVKLMLDICIKWPLIHPKAFKYFAVPPPKGVLLYGPPGCGKTSLVRSIASSANLN 520

Query: 206 VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP 265
           VL A AA+LYSPY+G  E N++QLF RAR   PA+LFIDEI+   +C   E+   +    
Sbjct: 521 VLTAMAAELYSPYLGVTEANISQLFQRARANVPAVLFIDEIDSLVSCRSEEKKGSSGFDD 580

Query: 266 RIPRT 270
           R+  T
Sbjct: 581 RVLST 585

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443693118|gb|ELT94554.1| hypothetical protein CAPTEDRAFT_225462 [Capitella teleta]

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 82/131 (62%)

Query: 117 LNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIP 176
           L   +  I    +   D   + +  F  ++GGL  V+  +++ VEWP K    F RL IP
Sbjct: 414 LEAALHAIVPSTQRHSDITADFKPTFWKDIGGLDDVKNKIKQAVEWPLKMGEAFRRLGIP 473

Query: 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLA 236
            PKG+LLYGPPGCAKT+LVR  A       LA S AQLYSP+VG++E+ + ++F +AR  
Sbjct: 474 CPKGVLLYGPPGCAKTTLVRAAATSCHVTFLAVSCAQLYSPFVGDSEKKIAEVFQQARAG 533

Query: 237 APAILFIDEIE 247
           AP+ILF+DE++
Sbjct: 534 APSILFLDEVD 544

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443693115|gb|ELT94551.1| hypothetical protein CAPTEDRAFT_225461 [Capitella teleta]

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 82/131 (62%)

Query: 117 LNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIP 176
           L   +  I    +   D   + +  F  ++GGL  V+  +++ VEWP K    F RL IP
Sbjct: 351 LEAALHAIVPSTQRHSDITADFKPTFWKDIGGLDDVKNKIKQAVEWPLKMGEAFRRLGIP 410

Query: 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLA 236
            PKG+LLYGPPGCAKT+LVR  A       LA S AQLYSP+VG++E+ + ++F +AR  
Sbjct: 411 CPKGVLLYGPPGCAKTTLVRAAATSCHVTFLAVSCAQLYSPFVGDSEKKIAEVFQQARAG 470

Query: 237 APAILFIDEIE 247
           AP+ILF+DE++
Sbjct: 471 APSILFLDEVD 481

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|380795353|gb|AFE69552.1| spermatogenesis-associated protein 5-like protein 1, partial [Macaca mulatta]

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 88/132 (66%), Gaps = 9/132 (6%)

Query: 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKT 192
           DWE         ++GGL+ V+  +++++EWP K+ REF RL + +PKG+LLYGPPGCAKT
Sbjct: 161 DWE---------QIGGLEDVKLKLKQSIEWPLKFPREFVRLGLIQPKGVLLYGPPGCAKT 211

Query: 193 SLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252
           +LVR LA       ++ S A L+SP+VG++E+ ++Q+F +AR + PAI+F+DEI+     
Sbjct: 212 TLVRALATSCHCSFVSVSGADLFSPFVGDSEKILSQIFRQARASTPAIVFLDEIDSILGA 271

Query: 253 EYREQTADNAKK 264
               +T  + ++
Sbjct: 272 RSASKTGCDVQE 283

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410912802|ref|XP_003969878.1| PREDICTED: spermatogenesis-associated protein 5-like protein 1-like [Takifugu rubripes]

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 78/103 (75%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL  V+  + ++VEWP +Y   F R+ + +P+G+LLYGPPGCAKT+LVR +A+ S  
Sbjct: 452 QIGGLDEVKFKLRQSVEWPMRYPEAFVRMGLHRPRGVLLYGPPGCAKTTLVRAVASSSHC 511

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             L+ S A LYSPYVG++E+ + QLFH+AR  AP+ILF+DEI+
Sbjct: 512 AFLSVSGADLYSPYVGDSEKALAQLFHQARACAPSILFLDEID 554

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321455602|gb|EFX66730.1| hypothetical protein DAPPUDRAFT_302447 [Daphnia pulex]

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 81/123 (65%), Gaps = 9/123 (7%)

Query: 125 GEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLY 184
           G G   R  W+         E+GGL+  R  + ++VEWP K+   FERL +P+PKG+L+Y
Sbjct: 243 GSGEFRRVSWD---------EVGGLEEARMYIRRSVEWPLKHPEAFERLNVPRPKGVLIY 293

Query: 185 GPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFID 244
           GPPGC K+ LVR  A       L+ SAA+L+SP+VG++E+ V+ LF RAR A PAILF+D
Sbjct: 294 GPPGCGKSLLVRAAATSCTASFLSISAAELFSPFVGDSEKMVSDLFRRARQAVPAILFLD 353

Query: 245 EIE 247
           E++
Sbjct: 354 ELD 356

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405966052|gb|EKC31377.1| Spermatogenesis-associated protein 5-like protein 1 [Crassostrea gigas]

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 77/103 (74%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGLK  +  +++ VEWP K+   F R+ +P P+G+LLYGPPGC KT+LV+ +A  S  
Sbjct: 400 DIGGLKEAKLKIQQAVEWPIKHPEAFSRMGLPSPRGVLLYGPPGCCKTTLVKAVATSSSA 459

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             L+ S AQL+SPYVG++E+ +T++F RAR  APA++F+DEI+
Sbjct: 460 TFLSLSGAQLFSPYVGDSEKLITEVFQRARAGAPALIFLDEID 502

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|67969911|dbj|BAE01303.1| unnamed protein product [Macaca fascicularis]

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 83/115 (72%), Gaps = 9/115 (7%)

Query: 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKT 192
           DWE         ++GGL+ V+  +++++EWP K+ REF R+ + +PKG+LLYGPPGCAKT
Sbjct: 7   DWE---------QIGGLEDVKLKLKQSIEWPLKFPREFVRMGLIQPKGVLLYGPPGCAKT 57

Query: 193 SLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
           +LVR LA       ++ S A L+SP+VG++E+ ++Q+F +AR + PAI+F+DEI+
Sbjct: 58  TLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQIFRQARASTPAIVFLDEID 112

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348538695|ref|XP_003456826.1| PREDICTED: spermatogenesis-associated protein 5-like protein 1-like [Oreochromis niloticus]

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 80/119 (67%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL  V+  + +++EWP  +   F RL + +P+G+LLYGPPGCAKT+LV+  A  S  
Sbjct: 457 QIGGLDDVKLKLSQSIEWPMAHPEAFVRLGLCRPRGVLLYGPPGCAKTTLVKAAATSSNC 516

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK 263
             L+ S A LYSPYVG++E+ + QLFH+AR  AP+ILF+DEI+         QT ++ +
Sbjct: 517 AFLSVSGADLYSPYVGDSEKALAQLFHQARACAPSILFLDEIDSLIGSRSHSQTPNSVQ 575

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397523093|ref|XP_003831577.1| PREDICTED: LOW QUALITY PROTEIN: spermatogenesis-associated protein 5-like protein 1 [Pan paniscus]

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 87/132 (65%), Gaps = 9/132 (6%)

Query: 133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKT 192
           DWE         E+GGL+ V+  +++++EWP K+  EF R+ + +PKG+LLYGPPGCAKT
Sbjct: 384 DWE---------EIGGLEDVKLKLKQSIEWPLKFPWEFVRMGLTQPKGVLLYGPPGCAKT 434

Query: 193 SLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC 252
           +LVR LA       ++ S A L+SP+VG++E+ ++Q+F +AR + PAILF+DEI+     
Sbjct: 435 TLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQIFRQARASTPAILFLDEIDSILGA 494

Query: 253 EYREQTADNAKK 264
               +T  + ++
Sbjct: 495 RSASKTGCDVQE 506

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
UNIPROTKB|Q9BVQ7	753	SPATA5L1 "Spermatogenesis-asso	0.264	0.136	0.495	7e-25
UNIPROTKB|F6UUI0	789	SPATA5L1 "Uncharacterized prot	0.307	0.152	0.433	9.9e-25
UNIPROTKB|A7YSY2	767	SPATA5L1 "Spermatogenesis-asso	0.264	0.134	0.485	1.2e-24
UNIPROTKB|F1SN45	755	SPATA5L1 "Uncharacterized prot	0.307	0.158	0.416	2.4e-24
ZFIN|ZDB-GENE-060929-204	748	spata5l1 "spermatogenesis asso	0.264	0.137	0.456	5e-24
UNIPROTKB|E2QSC5	747	SPATA5L1 "Uncharacterized prot	0.307	0.160	0.426	1.4e-23
RGD|1595990	747	Spata5l1 "spermatogenesis asso	0.264	0.137	0.466	2.2e-23
UNIPROTKB|F1NG80	748	SPATA5L1 "Uncharacterized prot	0.264	0.137	0.466	4.7e-23
DICTYBASE|DDB_G0282241	825	DDB_G0282241 [Dictyostelium di	0.264	0.124	0.436	3.2e-22
MGI|MGI:1927170	893	Spata5 "spermatogenesis associ	0.264	0.115	0.436	6e-22

UNIPROTKB|Q9BVQ7 SPATA5L1 "Spermatogenesis-associated protein 5-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 7.0e-25, P = 7.0e-25
 Identities = 51/103 (49%), Positives = 79/103 (76%)

Query:   145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
             E+GGL+ V+  +++++EWP K+  EF R+ + +PKG+LLYGPPGCAKT+LVR LA     
Sbjct:   465 EIGGLEDVKLKLKQSIEWPLKFPWEFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCHC 524

Query:   205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
               ++ S A L+SP+VG++E+ ++Q+F +AR + PAILF+DEI+
Sbjct:   525 SFVSVSGADLFSPFVGDSEKVLSQIFRQARASTPAILFLDEID 567

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F6UUI0 SPATA5L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 292 (107.8 bits), Expect = 9.9e-25, P = 9.9e-25
 Identities = 52/120 (43%), Positives = 84/120 (70%)

Query:   145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
             ++GGL+ V+  +++++EWP K+ REF R+ + +PKG+LLYGPPGCAKT+LVR LA     
Sbjct:   501 QIGGLEDVKLKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCHC 560

Query:   205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
               ++ S A L+SP+VG++E+ ++Q+F +AR   PAI+F+DEI+         +T  N ++
Sbjct:   561 SFVSVSGADLFSPFVGDSEKVLSQVFRQARANTPAIVFLDEIDSILGSRSISKTECNVQE 620

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|A7YSY2 SPATA5L1 "Spermatogenesis-associated protein 5-like protein 1" [Bos taurus (taxid:9913)]

 Score = 291 (107.5 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 50/103 (48%), Positives = 79/103 (76%)

Query:   145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
             ++GGL+ V+  +++++EWP K+ REF R+ + +PKG+LLYGPPGCAKT+LVR LA     
Sbjct:   467 QIGGLEDVKLKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCRC 526

Query:   205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
               ++ S A L+SP+VG++E+ ++Q+F +AR   PAI+F+DEI+
Sbjct:   527 SFVSVSGADLFSPFVGDSEKILSQVFRQARANTPAIVFLDEID 569

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|F1SN45 SPATA5L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 288 (106.4 bits), Expect = 2.4e-24, P = 2.4e-24
 Identities = 50/120 (41%), Positives = 83/120 (69%)

Query:   145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
             ++GGL+  +  +++++EWP K+ REF R+ + +PKG+LLYGPPGCAKT+LVR LA     
Sbjct:   467 QIGGLEDAKRKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCHC 526

Query:   205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
               ++ S A L+SP+VG++E+ ++Q+F +AR   PA++F+DEI+         +T  N ++
Sbjct:   527 SFVSVSGADLFSPFVGDSEKILSQVFQQARANTPAVVFLDEIDSILGSRSISKTGCNVQE 586

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

ZFIN|ZDB-GENE-060929-204 spata5l1 "spermatogenesis associated 5-like 1" [Danio rerio (taxid:7955)]

 Score = 285 (105.4 bits), Expect = 5.0e-24, P = 5.0e-24
 Identities = 47/103 (45%), Positives = 78/103 (75%)

Query:   145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
             ++GGL+ V+  +++++EWP ++   F RL + +P+G+LLYGPPGCAKT+LV+  A+ S  
Sbjct:   453 QIGGLEDVKLKLKQSIEWPMRFPEAFVRLGVSRPRGVLLYGPPGCAKTTLVKAAASSSHC 512

Query:   205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
                + S A+L+SPYVG++E+ + QLF +AR  AP+I+F+DE++
Sbjct:   513 SFFSLSGAELFSPYVGDSEKTLAQLFAQARACAPSIVFLDEVD 555

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2QSC5 SPATA5L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 281 (104.0 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 52/122 (42%), Positives = 84/122 (68%)

Query:   145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
             ++GGL+ V+  +++++EWP K+ REF R+ + +PKG+LLYGPPGCAKT+LVR LA     
Sbjct:   457 QIGGLEDVKLKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCHC 516

Query:   205 RVLAASAAQLYSPYVGEAEQNVTQ--LFHRARLAAPAILFIDEIERTYNCEYREQTADNA 262
               ++ S A L+SP+VG++E+ ++Q  +F +AR   PAI+F+DEI+         +T  N 
Sbjct:   517 SFVSVSGADLFSPFVGDSEKVLSQQKVFRQARANTPAIVFLDEIDSILGSRSISKTECNV 576

Query:   263 KK 264
             ++
Sbjct:   577 QE 578

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

RGD|1595990 Spata5l1 "spermatogenesis associated 5-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 279 (103.3 bits), Expect = 2.2e-23, P = 2.2e-23
 Identities = 48/103 (46%), Positives = 77/103 (74%)

Query:   145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
             ++GGL+ V+  +++ VEWP K+ +EF R+ + +PKG+LLYGPPGCAKT+LVR LA     
Sbjct:   460 QIGGLEDVKLKLKQCVEWPLKFPQEFARMGLTQPKGLLLYGPPGCAKTTLVRALATSCHC 519

Query:   205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
               ++   A L+SP+VG++E+ ++Q+F +AR   PA++F+DEI+
Sbjct:   520 SFVSVCGADLFSPFVGDSEKVLSQVFRQARANTPALVFLDEID 562

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|F1NG80 SPATA5L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 276 (102.2 bits), Expect = 4.7e-23, P = 4.7e-23
 Identities = 48/103 (46%), Positives = 77/103 (74%)

Query:   145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
             ++GGL+ V+  ++++VEWP K  + F R+ + +PKG+LLYGP GCAKT+LV+ +A     
Sbjct:   464 QIGGLEDVKLKLKQSVEWPMKLPQAFARMGLARPKGVLLYGPSGCAKTTLVKAVATSCHC 523

Query:   205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
               L+ S A+L+SPYVG++E+ ++Q+F +AR   PAI+F+DEI+
Sbjct:   524 SFLSVSGAELFSPYVGDSEKILSQVFRQARANTPAIIFLDEID 566

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

DICTYBASE|DDB_G0282241 DDB_G0282241 [Dictyostelium discoideum (taxid:44689)]

 Score = 269 (99.8 bits), Expect = 3.2e-22, P = 3.2e-22
 Identities = 45/103 (43%), Positives = 71/103 (68%)

Query:   145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
             ++GGL  ++  + + +EWP  Y   FE+  +  PKGI+LYGPPGC+KT+LV+ +A+ S  
Sbjct:   571 DIGGLDDIKEELRQAIEWPNLYKESFEKFGLSPPKGIILYGPPGCSKTTLVKAVASSSKL 630

Query:   205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
               L+ S A ++SPY+G++EQ +  +F +AR   P+ILF DEI+
Sbjct:   631 SFLSLSGATIFSPYLGDSEQTIRDIFKKARQTTPSILFFDEID 673

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1927170 Spata5 "spermatogenesis associated 5" [Mus musculus (taxid:10090)]

 Score = 267 (99.0 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 45/103 (43%), Positives = 71/103 (68%)

Query:   145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
             ++GGL+ ++  +++ VEWP K+ + F R+ I  PKG+LLYGPPGC+KT + + LA  S  
Sbjct:   628 DIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANESGL 687

Query:   205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
               LA    +L + YVGE+E+ V ++F +AR  AP+I+F DE++
Sbjct:   688 NFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELD 730

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	390
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	2e-25
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	1e-22
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	8e-19
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	1e-18
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	1e-18
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	7e-17
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	9e-17
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	4e-16
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	2e-14
TIGR03689	512	TIGR03689, pup_AAA, proteasome ATPase	4e-14
PTZ00361	438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	2e-13
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	2e-13
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	4e-10
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	6e-10
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	1e-09
smart00382	148	smart00382, AAA, ATPases associated with a variety	2e-08
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	4e-08
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	5e-08
pfam07724	168	pfam07724, AAA_2, AAA domain (Cdc48 subfamily)	1e-05
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	4e-05
CHL00195	489	CHL00195, ycf46, Ycf46; Provisional	5e-05
TIGR00382	413	TIGR00382, clpX, endopeptidase Clp ATP-binding reg	6e-05
COG0714	329	COG0714, COG0714, MoxR-like ATPases [General funct	8e-05
COG2256	436	COG2256, MGS1, ATPase related to the helicase subu	0.001
PRK13341	725	PRK13341, PRK13341, recombination factor protein R	0.001
pfam07728	135	pfam07728, AAA_5, AAA domain (dynein-related subfa	0.002
PRK05342	412	PRK05342, clpX, ATP-dependent protease ATP-binding	0.003
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	0.004

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score =  107 bits (268), Expect = 2e-25
 Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 1/149 (0%)

Query: 100 IELREGGQRNGGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKT 159
            ELR      G   G+  ++  + + +    R     +E+     ++GGL+  +  +++ 
Sbjct: 199 RELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDEDVTLD-DIGGLEEAKEELKEA 257

Query: 160 VEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV 219
           +E P K    F +L +  PKG+LLYGPPG  KT L + +A  S  R ++   ++L S +V
Sbjct: 258 IETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWV 317

Query: 220 GEAEQNVTQLFHRARLAAPAILFIDEIER 248
           GE+E+N+ +LF +AR  AP+I+FIDEI+ 
Sbjct: 318 GESEKNIRELFEKARKLAPSIIFIDEIDS 346

Length = 494

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score =   99 bits (249), Expect = 1e-22
 Identities = 44/103 (42%), Positives = 69/103 (66%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+ V+  + + VEWP K+   FE++ I  PKG+LL+GPPG  KT L + +A  S  
Sbjct: 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA 513

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             +A    ++ S +VGE+E+ + ++F +AR AAPAI+F DEI+
Sbjct: 514 NFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEID 556

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 88.0 bits (218), Expect = 8e-19
 Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 5/116 (4%)

Query: 137 EEEGAFVPE-----LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAK 191
           EE    VP+     +GGLK  +  + + VE P K+   FE L I  PKG+LLYGPPG  K
Sbjct: 166 EEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGK 225

Query: 192 TSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
           T L + +A  +    ++ +  ++ S Y GE+E+ + ++F  A   AP+I+FIDEI+
Sbjct: 226 TLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEID 281

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 2/101 (1%)

Query: 147 GGLKG-VRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
           GGL   ++ + E  VE P K    FE L I  PKG+LLYGPPG  KT L + +A  +   
Sbjct: 154 GGLDEQIQEIRE-VVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT 212

Query: 206 VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
            +    ++L   Y+GE  + V +LF  AR  AP+I+FIDEI
Sbjct: 213 FIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEI 253

Length = 406

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 80.7 bits (200), Expect = 1e-18
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
           +LLYGPPG  KT+L + +A       +  S ++L S YVGE+E+ + +LF  A+  AP +
Sbjct: 1   LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV 60

Query: 241 LFIDEIER 248
           +FIDEI+ 
Sbjct: 61  IFIDEIDA 68

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 81.0 bits (201), Expect = 7e-17
 Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 2/101 (1%)

Query: 147 GGLKG-VRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
           GGL+  +R + E  VE P K    FE + I  PKG+LLYGPPG  KT L + +A  +   
Sbjct: 134 GGLEEQIREVRE-AVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192

Query: 206 VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
            +    ++L   ++GE  + V +LF  AR  AP+I+FIDEI
Sbjct: 193 FIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEI 233

Length = 389

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score = 80.6 bits (199), Expect = 9e-17
 Identities = 40/111 (36%), Positives = 62/111 (55%)

Query: 137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVR 196
           E       ++GGL+     + + VE P K+   FE + I  PKG+LLYGPPG  KT L +
Sbjct: 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174

Query: 197 TLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
            +A  +    +    ++L   Y+GE  + V ++F  A+  AP+I+FIDEI+
Sbjct: 175 AVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEID 225

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score = 79.0 bits (195), Expect = 4e-16
 Identities = 40/123 (32%), Positives = 66/123 (53%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL   +  + + VE P      +E++ I  P+G+LLYGPPG  KT L + +A H+  
Sbjct: 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA 205

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
             +    ++    Y+GE  + V  +F  AR  AP+I+FIDE++      +  QT  + + 
Sbjct: 206 TFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREV 265

Query: 265 PRI 267
            RI
Sbjct: 266 QRI 268

Length = 398

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 69.9 bits (171), Expect = 2e-14
 Identities = 33/89 (37%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 166 YAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGEA 222
                E L +P PK +LLYGPPG  KT+L R +A          L  +A+ L    V   
Sbjct: 7   IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAE 66

Query: 223 EQN---VTQLFHRARLAAPAILFIDEIER 248
                 V  LF  A  A P +LFIDEI+ 
Sbjct: 67  LFGHFLVRLLFELAEKAKPGVLFIDEIDS 95

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 24/122 (19%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL      +   VE PF +   +    +  PKG+LLYGPPGC K     TL A +V 
Sbjct: 183 DIGGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGVLLYGPPGCGK-----TLIAKAVA 237

Query: 205 RVLAASAA---------------QLYSPYVGEAEQNVTQLFHRARLAA----PAILFIDE 245
             LAA                  +L + YVGE E+ +  +F RAR  A    P I+F DE
Sbjct: 238 NSLAARIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASEGRPVIVFFDE 297

Query: 246 IE 247
           ++
Sbjct: 298 MD 299

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512

>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 23/153 (15%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+     +++ VE P  +   ++ + I  PKG++LYGPPG  KT L + +A  +  
Sbjct: 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA 243

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
             L    ++L   Y+G+  + V +LF  A   AP+I+FIDEI             D    
Sbjct: 244 TFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEI-------------DAIGT 290

Query: 265 PRIPRTNGGYREQTADTANKPRIQRTKREYREQ 297
            R   T+GG +E          IQRT  E   Q
Sbjct: 291 KRYDATSGGEKE----------IQRTMLELLNQ 313

Length = 438

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 32/83 (38%), Positives = 48/83 (57%)

Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
           +Y    ER     PK +L YGPPG  KT + + LA  +   +L   A +L   +VG+  +
Sbjct: 138 EYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGAR 197

Query: 225 NVTQLFHRARLAAPAILFIDEIE 247
            + +L+ RAR AAP I+FIDE++
Sbjct: 198 RIHELYERARKAAPCIVFIDELD 220

Length = 368

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score = 61.2 bits (148), Expect = 4e-10
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 165 KYARE---FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE 221
           +Y RE   F++L    PKG+L+ GPPG  KT L + +A  +       S +     +VG 
Sbjct: 169 EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV 228

Query: 222 AEQNVTQLFHRARLAAPAILFIDEIE 247
               V  +F +A+ AAP I+FIDEI+
Sbjct: 229 GASRVRDMFEQAKKAAPCIIFIDEID 254

Length = 644

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 60.2 bits (146), Expect = 6e-10
 Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 163 PFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA 222
           P K    F++L I  PKG+LL+GPPG  KT L R LA       L+ +  ++ S YVGE+
Sbjct: 3   PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANEGAEF-LSINGPEILSKYVGES 61

Query: 223 EQNVTQLFHRARLAAPAILFIDEI 246
           E  + +LF  A   AP+I+FIDEI
Sbjct: 62  ELRLRELFEEAEKLAPSIIFIDEI 85

Length = 494

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 31/83 (37%), Positives = 44/83 (53%)

Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
           K   +F +L    PKG+LL GPPG  KT L + +A  +     + S +     +VG    
Sbjct: 75  KNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAS 134

Query: 225 NVTQLFHRARLAAPAILFIDEIE 247
            V  LF +A+  AP I+FIDEI+
Sbjct: 135 RVRDLFEQAKKNAPCIIFIDEID 157

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 17/89 (19%)

Query: 177 KPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYS--------------PYV 219
             + IL+ GPPG  KT+L R LA         V+      +                   
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60

Query: 220 GEAEQNVTQLFHRARLAAPAILFIDEIER 248
           G  E  +      AR   P +L +DEI  
Sbjct: 61  GSGELRLRLALALARKLKPDVLILDEITS 89

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 21/134 (15%)

Query: 151 GVRALMEKTVEW--PFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLA--AHSVYRV 206
           GV    E+  E     K  ++++ L    PKG+LL GPPG  KT L + +A  A  V   
Sbjct: 154 GVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-VPFF 212

Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPR 266
             + +  +   +VG     V  LF +A+  AP I+FIDEI             D   + R
Sbjct: 213 SISGSDFVEM-FVGVGASRVRDLFEQAKKNAPCIIFIDEI-------------DAVGRQR 258

Query: 267 IPRTNGG--YREQT 278
                GG   REQT
Sbjct: 259 GAGLGGGNDEREQT 272

Length = 596

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 27/70 (38%), Positives = 40/70 (57%)

Query: 178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAA 237
           PKG+LL GPPG  KT L + +A  +     + S ++    +VG     V  LF +A+  +
Sbjct: 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENS 275

Query: 238 PAILFIDEIE 247
           P I+FIDEI+
Sbjct: 276 PCIVFIDEID 285

Length = 638

>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily)

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 28/92 (30%)

Query: 177 KPKG-ILLYGPPGCAKTSLVRTLA--------------------AHSVYRVLAASAAQLY 215
           +P G  L  GP G  KT L + LA                     HSV R++ A      
Sbjct: 1   RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPG--- 57

Query: 216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             YVG  E+   QL    R    +I+ IDEIE
Sbjct: 58  --YVG-YEEG-GQLTEAVRRKPYSIVLIDEIE 85

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 45.1 bits (108), Expect = 4e-05
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 11/72 (15%)

Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPA- 239
           ++L+GPPG  KT+L R +A  +     A SA        G  +  + ++   AR    A 
Sbjct: 39  MILWGPPGTGKTTLARIIAGATDAPFEALSAV-----TSGVKD--LREVIEEARQRRSAG 91

Query: 240 ---ILFIDEIER 248
              ILFIDEI R
Sbjct: 92  RRTILFIDEIHR 103

Length = 413

>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 11/110 (10%)

Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLA----IPKPKGILLYGPPGCAKTSLVRTLAAH 201
           +GGL  ++       +W  K +  F + A    +P P+G+LL G  G  K+   + +A  
Sbjct: 230 IGGLDNLK-------DWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282

Query: 202 SVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN 251
               +L     +L+   VGE+E  + Q+   A   +P IL+IDEI++ ++
Sbjct: 283 WQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFS 332

Length = 489

>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX)

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP-YVGEAEQNV-TQLFHRA----R 234
           ILL GP G  KT L +TLA         A A  L    YVGE  +N+  +L   A     
Sbjct: 119 ILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVE 178

Query: 235 LAAPAILFIDEIER 248
            A   I++IDEI++
Sbjct: 179 KAQKGIIYIDEIDK 192

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 413

>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 181 ILLYGPPGCAKTSLVRTLAAH---SVYRVLAAS---AAQLYSPYVGEAEQN--VTQLFHR 232
           +LL GPPG  KT L R LA        R+        + L   Y   A         F  
Sbjct: 46  VLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVP 105

Query: 233 ARL--AAPAILFIDEIERT 249
             L  A   IL +DEI R 
Sbjct: 106 GPLFAAVRVILLLDEINRA 124

Length = 329

>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 183 LYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPA--- 239
           L+GPPG  KT+L R +A  +     A SA       V    +++ ++   AR        
Sbjct: 53  LWGPPGTGKTTLARLIAGTTNAAFEALSA-------VTSGVKDLREIIEEARKNRLLGRR 105

Query: 240 -ILFIDEIER 248
            ILF+DEI R
Sbjct: 106 TILFLDEIHR 115

Length = 436

>gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 12/72 (16%)

Query: 182 LLYGPPGCAKTSLVRTLAAHSVYRVLAASAA-----QLYSPYVGEAEQNVTQLFHRARLA 236
           +LYGPPG  KT+L R +A H+     + +A       L +  V  A++ + +  H  R  
Sbjct: 56  ILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAE-VDRAKERLER--HGKRT- 111

Query: 237 APAILFIDEIER 248
              ILFIDE+ R
Sbjct: 112 ---ILFIDEVHR 120

Length = 725

>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 180 GILLYGPPGCAKTSLVRTLAAH---SVYRVLAASAA-------QLYSPYVGEAEQNVTQL 229
           G+LL GPPG  K+ L   LAA         +  +            +   G A      L
Sbjct: 1   GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGASWVDGPL 60

Query: 230 FHRARLAAPAILFIDEIER 248
              AR     I  +DEI R
Sbjct: 61  VRAAREG--EIAVLDEINR 77

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135

>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 20/79 (25%)

Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVL--------AASAAQLYSPYVGEAEQNV-TQLFH 231
           ILL GP G  KT L +TLA     R+L        A +  +  + YVGE  +N+  +L  
Sbjct: 111 ILLIGPTGSGKTLLAQTLA-----RILDVPFAIADATTLTE--AGYVGEDVENILLKLLQ 163

Query: 232 RA----RLAAPAILFIDEI 246
            A      A   I++IDEI
Sbjct: 164 AADYDVEKAQRGIVYIDEI 182

Length = 412

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 170 FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL 229
             R     P  +LL GP G  KTSL+R L       V A    Q          Q + +L
Sbjct: 16  LRRARSGGPPSVLLTGPSGTGKTSLLRELLEG--LLVAAGKCDQAERNPPYAFSQALREL 73

Query: 230 FHRARLAAPAILFIDE 245
             +      A L +  
Sbjct: 74  LRQLLRELAAELLLLR 89

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
KOG0733|consensus	802		100.0
KOG0730|consensus	693		100.0
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
KOG0736|consensus	953		100.0
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	100.0
KOG0741|consensus	744		100.0
KOG0735|consensus	952		100.0
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	100.0
KOG0726|consensus	440		100.0
KOG0733|consensus	802		100.0
KOG0727|consensus	408		100.0
KOG0652|consensus	424		100.0
KOG0731|consensus	774		100.0
KOG0734|consensus	752		100.0
KOG0738|consensus	491		99.98
KOG0729|consensus	435		99.97
KOG0728|consensus	404		99.97
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.97
KOG0739|consensus	439		99.97
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.97
KOG0737|consensus	386		99.96
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.96
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.96
CHL00195	489	ycf46 Ycf46; Provisional	99.96
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.95
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.95
KOG0651|consensus	388		99.95
CHL00176	638	ftsH cell division protein; Validated	99.94
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.94
CHL00206	2281	ycf2 Ycf2; Provisional	99.93
KOG0740|consensus	428		99.93
KOG0730|consensus	693		99.91
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.91
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.9
KOG0732|consensus	1080		99.9
KOG0741|consensus	744		99.89
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.89
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.83
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.61
KOG0732|consensus	1080		99.58
PF00004	132	AAA: ATPase family associated with various cellula	99.53
KOG0742|consensus	630		99.5
CHL00181	287	cbbX CbbX; Provisional	99.49
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.45
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.44
KOG0735|consensus	952		99.41
KOG0736|consensus	953		99.35
KOG0743|consensus	457		99.34
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.25
KOG0728|consensus	404		99.25
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.24
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.24
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.23
PRK04195	482	replication factor C large subunit; Provisional	99.19
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.17
KOG0744|consensus	423		99.17
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.17
KOG0734|consensus	752		99.12
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.11
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.1
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.1
KOG0652|consensus	424		99.09
KOG0729|consensus	435		99.09
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.06
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.06
CHL00206	2281	ycf2 Ycf2; Provisional	99.05
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.04
KOG0058|consensus	716		99.04
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.04
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.02
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.01
PRK12402	337	replication factor C small subunit 2; Reviewed	99.0
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.0
smart00382	148	AAA ATPases associated with a variety of cellular	98.99
CHL00095	821	clpC Clp protease ATP binding subunit	98.99
KOG0727|consensus	408		98.98
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.98
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.97
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.96
PLN03025	319	replication factor C subunit; Provisional	98.96
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	98.96
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.96
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.95
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.95
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.95
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.94
PRK10865	857	protein disaggregation chaperone; Provisional	98.94
COG4178	604	ABC-type uncharacterized transport system, permeas	98.94
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.93
PRK13342	413	recombination factor protein RarA; Reviewed	98.92
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.92
KOG0731|consensus	774		98.92
PHA02544	316	44 clamp loader, small subunit; Provisional	98.92
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	98.91
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.91
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.91
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	98.9
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.9
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.89
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.89
KOG0055|consensus	1228		98.89
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.89
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.88
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.88
KOG0055|consensus	1228		98.87
KOG0737|consensus	386		98.87
PRK13341	725	recombination factor protein RarA/unknown domain f	98.87
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.87
KOG0989|consensus	346		98.87
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.86
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.86
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.86
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.85
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.85
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.85
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.85
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.85
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.85
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.85
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.84
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.84
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.84
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.83
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.82
KOG0726|consensus	440		98.81
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.81
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.8
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.79
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.79
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.79
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.79
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.79
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.79
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.78
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.78
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	98.78
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.77
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.77
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.77
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.77
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.77
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.77
PRK06893	229	DNA replication initiation factor; Validated	98.77
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.77
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.77
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.76
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.76
PRK12422	445	chromosomal replication initiation protein; Provis	98.75
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.75
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.74
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.74
cd03246	173	ABCC_Protease_Secretion This family represents the	98.74
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	98.73
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.73
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.73
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.71
CHL00195	489	ycf46 Ycf46; Provisional	98.71
COG4988	559	CydD ABC-type transport system involved in cytochr	98.71
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.71
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.71
COG4181	228	Predicted ABC-type transport system involved in ly	98.71
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.7
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.7
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.7
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	98.7
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.7
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.7
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.7
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.69
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	98.69
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.69
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.69
KOG0056|consensus	790		98.69
PRK08084	235	DNA replication initiation factor; Provisional	98.68
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.68
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.68
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.67
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.67
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.67
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.67
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.67
KOG0057|consensus	591		98.67
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.67
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.67
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.67
KOG0651|consensus	388		98.66
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.66
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.66
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.65
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.65
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.65
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.65
KOG0738|consensus	491		98.65
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.65
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.64
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	98.64
KOG2004|consensus	906		98.63
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.63
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.63
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.63
KOG1969|consensus	877		98.63
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.62
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.62
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.62
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.62
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.62
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.62
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.61
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.61
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.61
KOG0991|consensus	333		98.61
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.61
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.61
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.6
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.6
PLN03232	1495	ABC transporter C family member; Provisional	98.59
COG1123	539	ATPase components of various ABC-type transport sy	98.59
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.59
PRK08727	233	hypothetical protein; Validated	98.59
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.59
PLN03130	1622	ABC transporter C family member; Provisional	98.59
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.59
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.59
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.59
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.58
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.58
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.58
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.58
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.58
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.58
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.57
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.57
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.57
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.57
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.57
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.57
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.57
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.57
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.56
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.56
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.56
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.56
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.56
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.56
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.56
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.55
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.55
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.55
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.55
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.55
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.55
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.55
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	98.54
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.54
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.54
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.54
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.54
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.54
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.54
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.54
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	98.53
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.53
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.53
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.53
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.53
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.53
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.53
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.53
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.53
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.53
KOG0745|consensus	564		98.52
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.52
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.52
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.52
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.51
PRK05642	234	DNA replication initiation factor; Validated	98.51
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.51
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.51
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.51
PRK10908	222	cell division protein FtsE; Provisional	98.51
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.51
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.51
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.51
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.51
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.51
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.51
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.51
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.5
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.5
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.5
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.5
COG4987	573	CydC ABC-type transport system involved in cytochr	98.5
KOG2028|consensus	554		98.5
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.5
PTZ00243	1560	ABC transporter; Provisional	98.5
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.49
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.49
PRK06620	214	hypothetical protein; Validated	98.49
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.48
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.48
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.48
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.48
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.48
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.48
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.48
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.48
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.48
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.48
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.47
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.47
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.47
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.47
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.47
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	98.47
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.47
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.47
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.47
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.47
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.47
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.46
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.46
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.46
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.46
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.46
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.46
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.46
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.46
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.46
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.46
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.45
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.45
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.45
CHL00176	638	ftsH cell division protein; Validated	98.45
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.45
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.45
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.45
PRK06835	329	DNA replication protein DnaC; Validated	98.44
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.44
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.44
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.44
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.44
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.44
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.44
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.44
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.44
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.43
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.43
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.43
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.43
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.43
PRK12377	248	putative replication protein; Provisional	98.43
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.42
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.42
PLN03232	1495	ABC transporter C family member; Provisional	98.42
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.41
KOG0060|consensus	659		98.41
PRK08181	269	transposase; Validated	98.41
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.41
PRK07952	244	DNA replication protein DnaC; Validated	98.41
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.41
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.41
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.4
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.4
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.4
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.4
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.39
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.39
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.39
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.39
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.39
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.38
PRK06526	254	transposase; Provisional	98.37
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.37
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.37
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.37
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	98.37
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.37
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.37
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.36
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.36
PRK09183	259	transposase/IS protein; Provisional	98.36
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.35
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.35
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.35
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.35
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.35
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.35
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.34
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.34
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.34
PRK09087	226	hypothetical protein; Validated	98.33
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.33
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.33
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.33
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.32
KOG0062|consensus	582		98.32
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.32
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.31
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.31
PRK06921	266	hypothetical protein; Provisional	98.31
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.31
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.31
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.31
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.3
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.3
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.29
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.29
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.29
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.28
PLN03130	1622	ABC transporter C family member; Provisional	98.28
PRK08116	268	hypothetical protein; Validated	98.28
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.28
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.27
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.27
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.27
COG1123	539	ATPase components of various ABC-type transport sy	98.27
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.26
PRK13409	590	putative ATPase RIL; Provisional	98.26
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.26
COG4172	534	ABC-type uncharacterized transport system, duplica	98.26
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	98.26
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.25
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.25
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.25
PRK10938	490	putative molybdenum transport ATP-binding protein	98.25
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.25
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.25
PHA02244	383	ATPase-like protein	98.24
KOG0740|consensus	428		98.24
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.24
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.24
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.23
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.23
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.23
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.23
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.23
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.23
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.22
PLN03073	718	ABC transporter F family; Provisional	98.22
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.22
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.22
PRK08939	306	primosomal protein DnaI; Reviewed	98.22
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.21
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.21
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.21
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.21
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.21
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.2
PF07726	131	AAA_3: ATPase family associated with various cellu	98.2
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.2
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.2
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.2
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.2
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.19
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.19
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.19
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	98.18
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.18
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.18
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.18
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.18
CHL00095	821	clpC Clp protease ATP binding subunit	98.17
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.17
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.16
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.16
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.16
PRK11147	635	ABC transporter ATPase component; Reviewed	98.15
PLN03073	718	ABC transporter F family; Provisional	98.15
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.15
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.15
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.15
PF13173	128	AAA_14: AAA domain	98.15
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.15
PRK11147	635	ABC transporter ATPase component; Reviewed	98.15
COG0714	329	MoxR-like ATPases [General function prediction onl	98.14
KOG0064|consensus	728		98.14
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.14
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.14
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.13
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	98.13
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.13
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.13
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.12
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.12
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.12
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.11
COG0488	530	Uup ATPase components of ABC transporters with dup	98.11
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.11
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.11
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.11
COG0488	530	Uup ATPase components of ABC transporters with dup	98.11
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.1
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.1
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.1
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.08
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.08
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.08
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.08
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.08

>KOG0733|consensus

Probab=100.00  E-value=2.8e-58  Score=454.38  Aligned_cols=349  Identities=23%  Similarity=0.361  Sum_probs=287.6

Q ss_pred             eeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc----ccCCcccchHHHHHHhhc
Q psy11689         12 VLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF----TKLNEEVELSENVQREEE   84 (390)
Q Consensus        12 ~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~t~   84 (390)
                      |||||+|||||++|+||+|              +||||   .+.+|+ +..|.+||.+    ++++.++|+ ++||++|.
T Consensus       330 VlVIgATnRPDslDpaLRR--------------aGRFdrEI~l~vP~-e~aR~~IL~~~~~~lrl~g~~d~-~qlA~lTP  393 (802)
T KOG0733|consen  330 VLVIGATNRPDSLDPALRR--------------AGRFDREICLGVPS-ETAREEILRIICRGLRLSGDFDF-KQLAKLTP  393 (802)
T ss_pred             eEEEecCCCCcccCHHHhc--------------cccccceeeecCCc-hHHHHHHHHHHHhhCCCCCCcCH-HHHHhcCC
Confidence            9999999999999999999              99999   555666 8899999988    789999999 99999999


Q ss_pred             CCccccccccccccchhhhcCCCC--------CC---C-------CCC--C-----------------------------
Q psy11689         85 GIAGENLQRGGGEEGIELREGGQR--------NG---G-------EGG--I-----------------------------  115 (390)
Q Consensus        85 G~~g~~l~~~~~ea~~~~~~~~~~--------~~---~-------~~~--~-----------------------------  115 (390)
                      ||+|+||.++|.+|++.+..+...        ..   +       ...  +                             
T Consensus       394 GfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~  473 (802)
T KOG0733|consen  394 GFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSK  473 (802)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcCh
Confidence            999999999999999764321100        00   0       000  0                             


Q ss_pred             ------------------CchhhHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCC
Q psy11689        116 ------------------GLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPK  177 (390)
Q Consensus       116 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  177 (390)
                                        .+.+..+|+++...|++.|+         |||++++++.+|+.++.+|.++|+.|+.+|+..
T Consensus       474 E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~---------dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~  544 (802)
T KOG0733|consen  474 ELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWD---------DIGALEEVRLELNMAILAPIKRPDLFKALGIDA  544 (802)
T ss_pred             HHhccceecHHHHHHHHHhcCcchhcccceecCCCChh---------hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC
Confidence                              02344678888899999999         999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH-
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE-  256 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~-  256 (390)
                      |.||||+||||||||.||+|+|++++.+|+.+.+++++++|+|++|..++.+|++|+.+.||||||||+|++++.|... 
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~  624 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG  624 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988643 


Q ss_pred             -HHHHHhhcCCCcEEEec---cCHHHHHhcCchhHHHhHHH--------hhhhcCCchhHHHhhc-ccccccCCCCCCCC
Q psy11689        257 -QTADNAKKPRIPRTNGG---YREQTADTANKPRIQRTKRE--------YREQTADTAHKTRISR-TNRGYREKTADTAN  323 (390)
Q Consensus       257 -~~~~~~~~~~~~~i~~~---~~~~~i~~t~~~~~~r~~~~--------~l~~l~~~~~r~~I~~-~n~~~r~~~~~~vd  323 (390)
                       .....+.+..++.+.+.   ..+++|++||||+++.+.+.        +...+|...+|..|+. ...-.+....+++|
T Consensus       625 s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVd  704 (802)
T KOG0733|consen  625 SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVD  704 (802)
T ss_pred             chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccC
Confidence             23344455555554443   45678999999998644442        2334667888888873 22335566688999


Q ss_pred             cchhhhcCC--CCCCCcHHHHHHHHHHHHHHHHccc------------c----ccChhhhhhhHHHHhcCccccccCCCc
Q psy11689        324 KPRIPRTNR--GYREYSAQNANTANKPRIQRTKREY------------R----EQTADTANKPRIQRIGNLSQRNRSSPK  385 (390)
Q Consensus       324 l~~la~~t~--gfs~~gaDL~~l~~~A~~~a~~r~~------------~----~i~~~~~~~~~~~~~~~~~~~~~~~~~  385 (390)
                      |+.||+.+.  ||+  ||||..||++|.+.|.++..            .    .+|+.||..++-+.--+.++++|.-|.
T Consensus       705 l~eia~~~~c~gft--GADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd  782 (802)
T KOG0733|consen  705 LDEIARNTKCEGFT--GADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYD  782 (802)
T ss_pred             HHHHhhcccccCCc--hhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHH
Confidence            999998777  999  99999999999999987731            1    256779999988888888888876665


Q ss_pred             cc
Q psy11689        386 KV  387 (390)
Q Consensus       386 ~~  387 (390)
                      +.
T Consensus       783 ~l  784 (802)
T KOG0733|consen  783 RL  784 (802)
T ss_pred             HH
Confidence            44

>KOG0730|consensus

Probab=100.00  E-value=5.8e-55  Score=436.42  Aligned_cols=349  Identities=23%  Similarity=0.387  Sum_probs=292.1

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc----ccCCcccchHHHHHHh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      -+++|+++|||++++|++++|               |||+   +|.+|. ..+|++|+.+    |+..+++++ +.+|..
T Consensus       319 ~~vivl~atnrp~sld~alRR---------------gRfd~ev~IgiP~-~~~RldIl~~l~k~~~~~~~~~l-~~iA~~  381 (693)
T KOG0730|consen  319 AKVIVLAATNRPDSLDPALRR---------------GRFDREVEIGIPG-SDGRLDILRVLTKKMNLLSDVDL-EDIAVS  381 (693)
T ss_pred             CcEEEEEecCCccccChhhhc---------------CCCcceeeecCCC-chhHHHHHHHHHHhcCCcchhhH-HHHHHH
Confidence            378999999999999999885               8899   777777 8999999987    677788999 999999


Q ss_pred             hcCCccccccccccccchhhhcCCCCCCCCCCCCchhhHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhc
Q psy11689         83 EEGIAGENLQRGGGEEGIELREGGQRNGGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEW  162 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~  162 (390)
                      |.||+|+||.++|.+++.........++..+.....+...|+...+.++++|+         ||||++++|.+|++.+.+
T Consensus       382 thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~psa~Re~~ve~p~v~W~---------dIGGlE~lK~elq~~V~~  452 (693)
T KOG0730|consen  382 THGYVGADLAALCREASLQATRRTLEIFQEALMGIRPSALREILVEMPNVSWD---------DIGGLEELKRELQQAVEW  452 (693)
T ss_pred             ccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCchhhhheeccCCCCChh---------hccCHHHHHHHHHHHHhh
Confidence            99999999999999999886554333333344456677788888899999999         999999999999999999


Q ss_pred             cccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEE
Q psy11689        163 PFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILF  242 (390)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~  242 (390)
                      |.++++.|.++++.++++||+|||||||||++|+++|++++.+|+.+.+++++++|+|++|+.++++|..|+...|||||
T Consensus       453 p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiF  532 (693)
T KOG0730|consen  453 PLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIF  532 (693)
T ss_pred             hhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCCChhhHHHH--HHHhhcCCCcEEE---eccCHHHHHhcCchhHHHhHHHh-----h---hhcCCchhHHHhhc
Q psy11689        243 IDEIERTYNCEYREQT--ADNAKKPRIPRTN---GGYREQTADTANKPRIQRTKREY-----R---EQTADTAHKTRISR  309 (390)
Q Consensus       243 lDEid~~l~~r~~~~~--~~~~~~~~~~~i~---~~~~~~~i~~t~~~~~~r~~~~~-----l---~~l~~~~~r~~I~~  309 (390)
                      |||+|++...|+.+..  .+.+.+..++.+.   ...++.++++||||+.+.+.+..     .   ..+|+...|..|+.
T Consensus       533 fDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk  612 (693)
T KOG0730|consen  533 FDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILK  612 (693)
T ss_pred             hhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHH
Confidence            9999999998853322  3333333333332   23567789999999886444432     1   12556777888853


Q ss_pred             ccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc--ccccChhhhhhhHHHHhcCccccccCCCcc
Q psy11689        310 TNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKRE--YREQTADTANKPRIQRIGNLSQRNRSSPKK  386 (390)
Q Consensus       310 ~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (390)
                      .  ..+..+ .+++|+.+||+.|+|||  ||||.++|++|++.|+++.  ...|+.+||.++.-..--+++....--|++
T Consensus       613 ~--~~kkmp~~~~vdl~~La~~T~g~S--GAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~  688 (693)
T KOG0730|consen  613 Q--CAKKMPFSEDVDLEELAQATEGYS--GAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLTSELLEKYED  688 (693)
T ss_pred             H--HHhcCCCCccccHHHHHHHhccCC--hHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCCHHHHHHHHH
Confidence            3  223333 66799999999999999  9999999999999999985  568999999999988888888877766666


Q ss_pred             cc
Q psy11689        387 VS  388 (390)
Q Consensus       387 ~~  388 (390)
                      |.
T Consensus       689 fa  690 (693)
T KOG0730|consen  689 FA  690 (693)
T ss_pred             Hh
Confidence            54

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-43  Score=333.36  Aligned_cols=237  Identities=25%  Similarity=0.356  Sum_probs=185.0

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY  218 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~  218 (390)
                      +..++.||||++++++++++++++|+++|+.|..+|+.||+|||||||||||||.||+|+|++.++.|+.+.++++..+|
T Consensus       146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKY  225 (406)
T COG1222         146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY  225 (406)
T ss_pred             CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHH
Confidence            34444499999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH------HHHHhhcCC--CcEEEeccCHHHHHhcCchhHH--
Q psy11689        219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQ------TADNAKKPR--IPRTNGGYREQTADTANKPRIQ--  288 (390)
Q Consensus       219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~------~~~~~~~~~--~~~i~~~~~~~~i~~t~~~~~~--  288 (390)
                      .|++.+.++++|+.|+.+.||||||||+|++..+|++..      ++..+..+.  +--......+.+|++|||++++  
T Consensus       226 iGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDP  305 (406)
T COG1222         226 IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDP  305 (406)
T ss_pred             hccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccCh
Confidence            999999999999999999999999999999998886542      112111110  0000111223345555554443  


Q ss_pred             ---HhHHHhhhh---cCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccC
Q psy11689        289 ---RTKREYREQ---TADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQT  361 (390)
Q Consensus       289 ---r~~~~~l~~---l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~  361 (390)
                         |+.++.+..   +|+..+|..|  ...+.+.+. .+++||+.||+.|+|||  ||||+++|.+|.+.|.++.+..+|
T Consensus       306 ALLRPGR~DRkIEfplPd~~gR~~I--l~IHtrkM~l~~dvd~e~la~~~~g~s--GAdlkaictEAGm~AiR~~R~~Vt  381 (406)
T COG1222         306 ALLRPGRFDRKIEFPLPDEEGRAEI--LKIHTRKMNLADDVDLELLARLTEGFS--GADLKAICTEAGMFAIRERRDEVT  381 (406)
T ss_pred             hhcCCCcccceeecCCCCHHHHHHH--HHHHhhhccCccCcCHHHHHHhcCCCc--hHHHHHHHHHHhHHHHHhccCeec
Confidence               222222111   3344555555  222333333 67899999999999999  999999999999999999999999


Q ss_pred             hhhhhhhHHHHhcCcccc
Q psy11689        362 ADTANKPRIQRIGNLSQR  379 (390)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~  379 (390)
                      |+||.+|+.+...+-.+.
T Consensus       382 ~~DF~~Av~KV~~~~~~~  399 (406)
T COG1222         382 MEDFLKAVEKVVKKKKKL  399 (406)
T ss_pred             HHHHHHHHHHHHhccccc
Confidence            999999998877654433

>KOG0736|consensus

Probab=100.00  E-value=1.1e-40  Score=337.04  Aligned_cols=335  Identities=21%  Similarity=0.317  Sum_probs=251.6

Q ss_pred             hhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccceeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689          8 VCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPT-APQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus         8 ~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      =|=.++++++|++-+.+-+-++.               -.+++|++|. .+++|.+||++    ..++.+|.+ +.+|+.
T Consensus       530 ~~~~~ivv~t~~s~~~lp~~i~~---------------~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~-k~~a~~  593 (953)
T KOG0736|consen  530 SCPPVIVVATTSSIEDLPADIQS---------------LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNL-KQLARK  593 (953)
T ss_pred             CCCceEEEEeccccccCCHHHHH---------------hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHH-HHHHHh
Confidence            34567888888875555444443               4445677777 58899999998    568899999 889999


Q ss_pred             hcCCccccccccccccchhh---hcCCC------CCCCCCC----CC-----chh--------hHhhhcccccCcccccc
Q psy11689         83 EEGIAGENLQRGGGEEGIEL---REGGQ------RNGGEGG----IG-----LNE--------RVQRIGEGREERRDWEG  136 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~---~~~~~------~~~~~~~----~~-----~~~--------~~~~~~~~~~~~~~~~~  136 (390)
                      |.||+..++.++........   .....      .......    ..     +.+        ...-.+.++.|++.|+ 
T Consensus       594 t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~Wd-  672 (953)
T KOG0736|consen  594 TSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWD-  672 (953)
T ss_pred             cCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchh-
Confidence            99999999988765542111   11000      0000000    00     111        1223356678999999 


Q ss_pred             ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC
Q psy11689        137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS  216 (390)
Q Consensus       137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~  216 (390)
                              ||||++++|.++.+.+..|+++++.|. .+.++..|||||||||||||.+|||+|.++...|+.+.++++++
T Consensus       673 --------DVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN  743 (953)
T KOG0736|consen  673 --------DVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN  743 (953)
T ss_pred             --------cccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence                    999999999999999999999999997 46788999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH----HHHHHHhhcCCCcEEE-----eccCHHHHHhcCchhH
Q psy11689        217 PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR----EQTADNAKKPRIPRTN-----GGYREQTADTANKPRI  287 (390)
Q Consensus       217 ~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~----~~~~~~~~~~~~~~i~-----~~~~~~~i~~t~~~~~  287 (390)
                      +|+|++|++++++|++|+..+|||||+||+|++.+.|..    ..+++.+....+..+.     .+..+++|++||||++
T Consensus       744 MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL  823 (953)
T KOG0736|consen  744 MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL  823 (953)
T ss_pred             HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence            999999999999999999999999999999999998753    3445555443333222     3456888999999999


Q ss_pred             HHhHHHhhhhcC---------CchhHHHhh-cccccccCCCCCCCCcchhhhcCC-CCCCCcHHHHHHHHHHHHHHHHcc
Q psy11689        288 QRTKREYREQTA---------DTAHKTRIS-RTNRGYREKTADTANKPRIPRTNR-GYREYSAQNANTANKPRIQRTKRE  356 (390)
Q Consensus       288 ~r~~~~~l~~l~---------~~~~r~~I~-~~n~~~r~~~~~~vdl~~la~~t~-gfs~~gaDL~~l~~~A~~~a~~r~  356 (390)
                      +.+.+.....++         +...+..|+ |..+  +-+..++||+.+||++.+ .|+  |||+-+||..|.+.|+.|.
T Consensus       824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr--kFkLdedVdL~eiAk~cp~~~T--GADlYsLCSdA~l~AikR~  899 (953)
T KOG0736|consen  824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR--KFKLDEDVDLVEIAKKCPPNMT--GADLYSLCSDAMLAAIKRT  899 (953)
T ss_pred             cChhhcCCCccceeEEecCCccHHHHHHHHHHHHH--HccCCCCcCHHHHHhhCCcCCc--hhHHHHHHHHHHHHHHHHH
Confidence            766665544444         233333332 3322  234578899999998765 899  9999999999999999882


Q ss_pred             -----------------ccccChhhhhhhHHHH
Q psy11689        357 -----------------YREQTADTANKPRIQR  372 (390)
Q Consensus       357 -----------------~~~i~~~~~~~~~~~~  372 (390)
                                       .-.++++||-++.-+.
T Consensus       900 i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l  932 (953)
T KOG0736|consen  900 IHDIESGTISEEEQESSSVRVTMEDFLKSAKRL  932 (953)
T ss_pred             HHHhhhccccccccCCceEEEEHHHHHHHHHhc
Confidence                             1257888888876543

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=100.00  E-value=1.1e-40  Score=356.02  Aligned_cols=352  Identities=22%  Similarity=0.328  Sum_probs=265.0

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      .++++++|+||+++.+|++++|              +|||+ .|.+|. +.++|.+|+..    +.+.+++++ +.+|+.
T Consensus       312 ~~~vivI~atn~~~~ld~al~r--------------~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l-~~la~~  376 (733)
T TIGR01243       312 RGRVIVIGATNRPDALDPALRR--------------PGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDL-DKLAEV  376 (733)
T ss_pred             CCCEEEEeecCChhhcCHHHhC--------------chhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCH-HHHHHh
Confidence            4678999999999999999999              99999 555555 37789999986    557778899 889999


Q ss_pred             hcCCccccccccccccchhhhcCCCC----CCCCC--------CCCc------------hhhHhhhcccccCcccccccc
Q psy11689         83 EEGIAGENLQRGGGEEGIELREGGQR----NGGEG--------GIGL------------NERVQRIGEGREERRDWEGEE  138 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~~~~~~~----~~~~~--------~~~~------------~~~~~~~~~~~~~~~~~~~~~  138 (390)
                      |.||+|+++..+|.+++.........    .....        ...+            .+...+....+.+.+.|+   
T Consensus       377 t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~---  453 (733)
T TIGR01243       377 THGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWS---  453 (733)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchh---
Confidence            99999999999999888764322110    00000        0000            011122223334556666   


Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY  218 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~  218 (390)
                            +++|++.+++.+.+.+.+++.+++.|..+++.++.++|||||||||||++|+++|.+++.+++.++++++.+.|
T Consensus       454 ------di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~  527 (733)
T TIGR01243       454 ------DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW  527 (733)
T ss_pred             ------hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence                  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---HHHHHhhcCCCcE---EEeccCHHHHHhcCchhHHHhHH
Q psy11689        219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---QTADNAKKPRIPR---TNGGYREQTADTANKPRIQRTKR  292 (390)
Q Consensus       219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---~~~~~~~~~~~~~---i~~~~~~~~i~~t~~~~~~r~~~  292 (390)
                      +|++++.++.+|..|+..+|+||||||+|++++.+...   ...+.+.+..++.   +....++.+|++||+|+.+.+.+
T Consensus       528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~al  607 (733)
T TIGR01243       528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPAL  607 (733)
T ss_pred             cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhh
Confidence            99999999999999999999999999999998765321   1111111111111   11234566788899887654333


Q ss_pred             H-----h---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc--------
Q psy11689        293 E-----Y---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKRE--------  356 (390)
Q Consensus       293 ~-----~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~--------  356 (390)
                      .     .   ...+|+...|..|+.... ......+++|+..+|+.|+||+  |+||+++|++|++.|.++.        
T Consensus       608 lRpgRfd~~i~v~~Pd~~~R~~i~~~~~-~~~~~~~~~~l~~la~~t~g~s--gadi~~~~~~A~~~a~~~~~~~~~~~~  684 (733)
T TIGR01243       608 LRPGRFDRLILVPPPDEEARKEIFKIHT-RSMPLAEDVDLEELAEMTEGYT--GADIEAVCREAAMAALRESIGSPAKEK  684 (733)
T ss_pred             cCCCccceEEEeCCcCHHHHHHHHHHHh-cCCCCCccCCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHhhhccchh
Confidence            2     1   112556777887763322 1223356799999999999999  9999999999999998852        


Q ss_pred             ----------ccccChhhhhhhHHHHhcCccccccCCCccc
Q psy11689        357 ----------YREQTADTANKPRIQRIGNLSQRNRSSPKKV  387 (390)
Q Consensus       357 ----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (390)
                                ...++++||.+++-+..-+.++.+...|+++
T Consensus       685 ~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~  725 (733)
T TIGR01243       685 LEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERL  725 (733)
T ss_pred             hhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence                      1268999999999877777766655544443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0741|consensus

Probab=100.00  E-value=6.7e-40  Score=319.68  Aligned_cols=269  Identities=17%  Similarity=0.199  Sum_probs=209.1

Q ss_pred             cchhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc--------ccCCc
Q psy11689          3 VDLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF--------TKLNE   71 (390)
Q Consensus         3 ~~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~--------~~~~~   71 (390)
                      +|+|+-.|||||||||||+|+||+||+|              ||||+   +|.||+ +++|.|||.|        ..++.
T Consensus       361 mDGVeqLNNILVIGMTNR~DlIDEALLR--------------PGRlEVqmEIsLPD-E~gRlQIl~IHT~rMre~~~l~~  425 (744)
T KOG0741|consen  361 MDGVEQLNNILVIGMTNRKDLIDEALLR--------------PGRLEVQMEISLPD-EKGRLQILKIHTKRMRENNKLSA  425 (744)
T ss_pred             cccHHhhhcEEEEeccCchhhHHHHhcC--------------CCceEEEEEEeCCC-ccCceEEEEhhhhhhhhcCCCCC
Confidence            6999999999999999999999999999              99999   999999 9999999999        45889


Q ss_pred             ccchHHHHHHhhcCCccccccccccccchhhhcCCCCCCCCCCCCchhhHh-----------hhcccccCccccccccCC
Q psy11689         72 EVELSENVQREEEGIAGENLQRGGGEEGIELREGGQRNGGEGGIGLNERVQ-----------RIGEGREERRDWEGEEEG  140 (390)
Q Consensus        72 ~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  140 (390)
                      |||+ ++||++|++|+|++|+++++.|...+..+.-...  .....++...           ..+.+-.|.+...+++-.
T Consensus       426 dVdl-~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~  502 (744)
T KOG0741|consen  426 DVDL-KELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLE  502 (744)
T ss_pred             CcCH-HHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHH
Confidence            9999 8999999999999999997777665544322111  1111111111           111112222222110000


Q ss_pred             CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchh
Q psy11689        141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVG  220 (390)
Q Consensus       141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g  220 (390)
                        -.-.+|+........+.+.....+..+.++....+-.++||+||||+|||+||..+|..+++||+++.+++-+.++.+
T Consensus       503 --~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sE  580 (744)
T KOG0741|consen  503 --RFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSE  580 (744)
T ss_pred             --HHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccH
Confidence              001244444555556666666666777777777888999999999999999999999999999999998888777766


Q ss_pred             hHH-HHHHHHHHHHHhcCCeEEEEcCCCCCCC-----hhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhH
Q psy11689        221 EAE-QNVTQLFHRARLAAPAILFIDEIERTYN-----CEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTK  291 (390)
Q Consensus       221 ~~~-~~i~~~f~~A~~~~p~il~lDEid~~l~-----~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~  291 (390)
                      ... ..++.+|.+|+++.-+||++|+++++++     +|+++.+.+.+..+.....+.+|++++++||++.++++.+
T Consensus       581 saKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m  657 (744)
T KOG0741|consen  581 SAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEM  657 (744)
T ss_pred             HHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHc
Confidence            544 6799999999999999999999999985     7999999999988888888999999999999998886543

>KOG0735|consensus

Probab=100.00  E-value=8.7e-40  Score=327.82  Aligned_cols=335  Identities=22%  Similarity=0.326  Sum_probs=249.6

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCCCCccCccccc-c-------ccCCcccchHHHHH
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPTAPQGRETELP-F-------TKLNEEVELSENVQ   80 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~~~~~r~~~l~-~-------~~~~~~v~l~~~la   80 (390)
                      |-++++.-+++..   -|+.-.++++..|+|.|+.|++|. .+.||.|...||.++. .       +....|.++   ++
T Consensus       529 nqvi~~y~~~~~~---ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~---ls  602 (952)
T KOG0735|consen  529 NQVIKIYLKRNRK---IAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDF---LS  602 (952)
T ss_pred             HHHHHHHHccCcE---EEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHH---HH
Confidence            4444444444332   133334456667999999999999 9999997777665553 3       223344444   99


Q ss_pred             HhhcCCccccccccccccchh-hhcCCCCCCCC---------CCCCchhhHhhhcccccC-ccccccccCCCCCCCccCh
Q psy11689         81 REEEGIAGENLQRGGGEEGIE-LREGGQRNGGE---------GGIGLNERVQRIGEGREE-RRDWEGEEEGAFVPELGGL  149 (390)
Q Consensus        81 ~~t~G~~g~~l~~~~~ea~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~g~  149 (390)
                      .+|+||..-|+.-.+ +.+++ +......+...         +--.+.+.++|......+ ++.|+         ||||+
T Consensus       603 ~~TEGy~~~DL~ifV-eRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~---------digg~  672 (952)
T KOG0735|consen  603 VKTEGYLATDLVIFV-ERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWE---------DIGGL  672 (952)
T ss_pred             HhcCCccchhHHHHH-HHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCce---------ecccH
Confidence            999999999998874 44444 33111111111         001233444555544433 37888         99999


Q ss_pred             HHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHH
Q psy11689        150 KGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL  229 (390)
Q Consensus       150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~  229 (390)
                      .++++.+++.+++|.+||..|.+..++.+.|+|||||||||||+||.++|..+++.|+.+.+++++++|.|++|++++.+
T Consensus       673 ~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~l  752 (952)
T KOG0735|consen  673 FEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDL  752 (952)
T ss_pred             HHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEcCCCCCCChhhHHH--HHHHhhcCCCcEEEec---cCHHHHHhcCchhHHHhHHHhhhh-------
Q psy11689        230 FHRARLAAPAILFIDEIERTYNCEYREQ--TADNAKKPRIPRTNGG---YREQTADTANKPRIQRTKREYREQ-------  297 (390)
Q Consensus       230 f~~A~~~~p~il~lDEid~~l~~r~~~~--~~~~~~~~~~~~i~~~---~~~~~i~~t~~~~~~r~~~~~l~~-------  297 (390)
                      |.+|+..+|||+|+||+|++.++|....  ..+.+.+..+|.+.+.   .++.++++|+||+++.+.+..-..       
T Consensus       753 F~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C  832 (952)
T KOG0735|consen  753 FERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYC  832 (952)
T ss_pred             HHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeC
Confidence            9999999999999999999999886543  3344555555554444   345678999999987666544333       


Q ss_pred             -cCCchhHHHhhccccccc-CCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhh
Q psy11689        298 -TADTAHKTRISRTNRGYR-EKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADT  364 (390)
Q Consensus       298 -l~~~~~r~~I~~~n~~~r-~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~  364 (390)
                       +|+..+|..|+  +.... ....+++|++.+|..|+||+  ||||..|+..|.+.|+.+-....+++.
T Consensus       833 ~~P~~~eRl~il--~~ls~s~~~~~~vdl~~~a~~T~g~t--gADlq~ll~~A~l~avh~~l~~~~~~~  897 (952)
T KOG0735|consen  833 PLPDEPERLEIL--QVLSNSLLKDTDVDLECLAQKTDGFT--GADLQSLLYNAQLAAVHEILKREDEEG  897 (952)
T ss_pred             CCCCcHHHHHHH--HHHhhccCCccccchHHHhhhcCCCc--hhhHHHHHHHHHHHHHHHHHHhcCccc
Confidence             45677787774  22222 33467899999999999999  999999999999999877444333333

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-38  Score=322.17  Aligned_cols=333  Identities=23%  Similarity=0.312  Sum_probs=261.1

Q ss_pred             eeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhhcC
Q psy11689         12 VLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREEEG   85 (390)
Q Consensus        12 ~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G   85 (390)
                      ++++++||+++.+|+++++              ||||+ .+.++. +.+.|.+++.+    +.+..++++ +.+|..+.|
T Consensus       119 v~~~~~~~~~~~~~~a~~~--------------~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~-~~~a~~~~~  183 (494)
T COG0464         119 VIVIGATNRPDGLDPAKRR--------------PGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTG-KTLAARTVG  183 (494)
T ss_pred             eEEEeecCCccccChhHhC--------------ccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccH-HHHHHhcCC
Confidence            8999999999999999999              99999 666555 36667777776    566678888 889999999


Q ss_pred             CccccccccccccchhhhcCC-CCCCCCCCCCch---hhHhh-----hcccccCccccccccCCCCCCCccChHHHHHHH
Q psy11689         86 IAGENLQRGGGEEGIELREGG-QRNGGEGGIGLN---ERVQR-----IGEGREERRDWEGEEEGAFVPELGGLKGVRALM  156 (390)
Q Consensus        86 ~~g~~l~~~~~ea~~~~~~~~-~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l  156 (390)
                      ++++++..++.++......+. ............   .....     ......+.+.|.         +++|++..++.+
T Consensus       184 ~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~---------diggl~~~k~~l  254 (494)
T COG0464         184 KSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDEDVTLD---------DIGGLEEAKEEL  254 (494)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcccccccCCCCccee---------hhhcHHHHHHHH
Confidence            999999999988877643332 111111111111   11111     223345667777         999999999999


Q ss_pred             HHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhc
Q psy11689        157 EKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLA  236 (390)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~  236 (390)
                      ++.+.+++.+++.|.+.++.++.++|||||||||||+||+++|.+++.+|+.++.+++.++|+|+++++++.+|..|+..
T Consensus       255 ~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~  334 (494)
T COG0464         255 KEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKL  334 (494)
T ss_pred             HHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEcCCCCCCChhhHHH------HHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHHHh--------hhhcCCch
Q psy11689        237 APAILFIDEIERTYNCEYREQ------TADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREY--------REQTADTA  302 (390)
Q Consensus       237 ~p~il~lDEid~~l~~r~~~~------~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~--------l~~l~~~~  302 (390)
                      +|||||+||+|+++..+....      ....+.. .+..+....++.++++||+|+...+.+..        ...+|+..
T Consensus       335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~-~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~  413 (494)
T COG0464         335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLT-ELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE  413 (494)
T ss_pred             CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHH-HhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence            999999999999998875321      2111111 11112334456678999998876543322        11255677


Q ss_pred             hHHHhhcccccccCC-CCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc-ccccChhhhhhhHHH
Q psy11689        303 HKTRISRTNRGYREK-TADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKRE-YREQTADTANKPRIQ  371 (390)
Q Consensus       303 ~r~~I~~~n~~~r~~-~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~-~~~i~~~~~~~~~~~  371 (390)
                      .|..|+......... ...++|+..+++.|+||+  |+||+.+|.+|++.+.... ...+|++||..+.-+
T Consensus       414 ~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~s--gadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~  482 (494)
T COG0464         414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYS--GADIAALVREAALEALREARRREVTLDDFLDALKK  482 (494)
T ss_pred             HHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence            777776544443333 367899999999999999  9999999999999999998 779999999999876

>KOG0726|consensus

Probab=100.00  E-value=7e-34  Score=260.47  Aligned_cols=214  Identities=25%  Similarity=0.351  Sum_probs=188.1

Q ss_pred             cCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc
Q psy11689        138 EEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP  217 (390)
Q Consensus       138 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~  217 (390)
                      -+.-++.|+||++.+.+++++.+++|+.+|+.|+.+|+.+|.+|+|||+||||||.||+|+|++....|+.+.++++..+
T Consensus       179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk  258 (440)
T KOG0726|consen  179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK  258 (440)
T ss_pred             CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence            34556669999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHHHhhhh
Q psy11689        218 YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREYREQ  297 (390)
Q Consensus       218 ~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l~~  297 (390)
                      |.|++.+.++++|..|..+.|+|+|+||||++..+|++...                       -..++++|++++++++
T Consensus       259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~S-----------------------ggerEiQrtmLELLNQ  315 (440)
T KOG0726|consen  259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNS-----------------------GGEREIQRTMLELLNQ  315 (440)
T ss_pred             HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCC-----------------------ccHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999988865431                       1235789999999999


Q ss_pred             cCCchh---HHHhhcccccccCC-----------------------------------CCCCCCcchhhhcCCCCCCCcH
Q psy11689        298 TADTAH---KTRISRTNRGYREK-----------------------------------TADTANKPRIPRTNRGYREYSA  339 (390)
Q Consensus       298 l~~~~~---r~~I~~~n~~~r~~-----------------------------------~~~~vdl~~la~~t~gfs~~ga  339 (390)
                      +++++.   .++|++||+.....                                   +..+|+++.+....+.+|  ||
T Consensus       316 ldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlS--GA  393 (440)
T KOG0726|consen  316 LDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLS--GA  393 (440)
T ss_pred             ccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccc--cc
Confidence            887544   47788888533211                                   135888999988889999  99


Q ss_pred             HHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCc
Q psy11689        340 QNANTANKPRIQRTKREYREQTADTANKPRIQRIGNL  376 (390)
Q Consensus       340 DL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~  376 (390)
                      ||+++|.+|.+.|.+..+-.++++||.++..+..+.-
T Consensus       394 dIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K  430 (440)
T KOG0726|consen  394 DIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKK  430 (440)
T ss_pred             cHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence            9999999999999999888999999999998877643

>KOG0733|consensus

Probab=100.00  E-value=5.8e-34  Score=282.30  Aligned_cols=212  Identities=23%  Similarity=0.341  Sum_probs=173.9

Q ss_pred             CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcch
Q psy11689        140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV  219 (390)
Q Consensus       140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~  219 (390)
                      ...|.|+||++....++.+.+.. +++|+.|..+|+.|++|||||||||||||+||+++|++++.||+.+..+++.+++.
T Consensus       186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS  264 (802)
T KOG0733|consen  186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS  264 (802)
T ss_pred             CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence            34455999999999999999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH--HHHHhhcCC------CcEE-EeccCHHHHHhcCchhHHHh
Q psy11689        220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQ--TADNAKKPR------IPRT-NGGYREQTADTANKPRIQRT  290 (390)
Q Consensus       220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~--~~~~~~~~~------~~~i-~~~~~~~~i~~t~~~~~~r~  290 (390)
                      |++|++++++|..|+...|||+||||||++.++|...+  +.+.+....      +... ..+.++.+|++||||+.+.+
T Consensus       265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp  344 (802)
T KOG0733|consen  265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP  344 (802)
T ss_pred             cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH
Confidence            99999999999999999999999999999999885432  222222211      1111 12566888999999988655


Q ss_pred             HHHhhhh--------cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy11689        291 KREYREQ--------TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR  355 (390)
Q Consensus       291 ~~~~l~~--------l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r  355 (390)
                      .+..-..        .|+...|..|+.+-+ .......++|+.+||++|+||+  ||||++||.+|++.|+.|
T Consensus       345 aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~-~~lrl~g~~d~~qlA~lTPGfV--GADL~AL~~~Aa~vAikR  414 (802)
T KOG0733|consen  345 ALRRAGRFDREICLGVPSETAREEILRIIC-RGLRLSGDFDFKQLAKLTPGFV--GADLMALCREAAFVAIKR  414 (802)
T ss_pred             HHhccccccceeeecCCchHHHHHHHHHHH-hhCCCCCCcCHHHHHhcCCCcc--chhHHHHHHHHHHHHHHH
Confidence            5433333        445666666643222 1234466899999999999999  999999999999999988

>KOG0727|consensus

Probab=100.00  E-value=1.1e-33  Score=254.74  Aligned_cols=213  Identities=23%  Similarity=0.374  Sum_probs=177.5

Q ss_pred             cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .+.|++++.         ||||++-+|+++++++++|+.+.+.|+..|+.||+|+|+|||||||||+|++++|+.....|
T Consensus       147 ~ekpdvsy~---------diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f  217 (408)
T KOG0727|consen  147 DEKPDVSYA---------DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF  217 (408)
T ss_pred             CCCCCcccc---------ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence            345566666         99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCchh
Q psy11689        207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPR  286 (390)
Q Consensus       207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~  286 (390)
                      +.+.++++..+|.|++...++.+|..|+...|+||||||+|++..+|++.++                       ..+++
T Consensus       218 irvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqt-----------------------gadre  274 (408)
T KOG0727|consen  218 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQT-----------------------GADRE  274 (408)
T ss_pred             eeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccc-----------------------cccHH
Confidence            9999999999999999999999999999999999999999999988876532                       12233


Q ss_pred             HHHhHHHhhhhcCCch---hHHHhhcccc-----------------------------------cccCCCCCCCCcchhh
Q psy11689        287 IQRTKREYREQTADTA---HKTRISRTNR-----------------------------------GYREKTADTANKPRIP  328 (390)
Q Consensus       287 ~~r~~~~~l~~l~~~~---~r~~I~~~n~-----------------------------------~~r~~~~~~vdl~~la  328 (390)
                      ++|.+++++++++++.   +.++|++||+                                   ..+..+.+++|++.+.
T Consensus       275 vqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v  354 (408)
T KOG0727|consen  275 VQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLV  354 (408)
T ss_pred             HHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHh
Confidence            4444444444433321   2233333332                                   2223446789999999


Q ss_pred             hcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHh
Q psy11689        329 RTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRI  373 (390)
Q Consensus       329 ~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~  373 (390)
                      .+.+..|  ||||.++|.+|.+.|.+.++-.+.+.||++++-+.+
T Consensus       355 ~rpdkis--~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~v  397 (408)
T KOG0727|consen  355 ARPDKIS--GADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVV  397 (408)
T ss_pred             cCccccc--hhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhc
Confidence            9999999  999999999999999999999999999999996654

>KOG0652|consensus

Probab=100.00  E-value=2.6e-33  Score=253.38  Aligned_cols=230  Identities=22%  Similarity=0.335  Sum_probs=185.4

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY  218 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~  218 (390)
                      ++-.+.||||++.+.+++.+++.+|+.+++.|.++++.+|.|+|+|||||||||.+|++.|.+.+..|.++.++++...|
T Consensus       166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf  245 (424)
T KOG0652|consen  166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF  245 (424)
T ss_pred             CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhh
Confidence            44455699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH------HHHHhhcC--CCcEEEeccCHHHHHhcCchhHHHh
Q psy11689        219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQ------TADNAKKP--RIPRTNGGYREQTADTANKPRIQRT  290 (390)
Q Consensus       219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~------~~~~~~~~--~~~~i~~~~~~~~i~~t~~~~~~r~  290 (390)
                      .|.+.+.++.+|+.|+...|+||||||+|++..+|+..+      ....+..+  .+--.....++.+|++|||.+++.+
T Consensus       246 IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDP  325 (424)
T KOG0652|consen  246 IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDP  325 (424)
T ss_pred             hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCH
Confidence            999999999999999999999999999999998776532      12222111  1111122344556677777665544


Q ss_pred             HHHhhhh--------cCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccC
Q psy11689        291 KREYREQ--------TADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQT  361 (390)
Q Consensus       291 ~~~~l~~--------l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~  361 (390)
                      .+..-..        +|....|..|  ...+.|.+. .++++|+++|+.|++|.  ||+.+++|.+|.+.|.+|+..+++
T Consensus       326 ALlRSGRLDRKIEfP~Pne~aRarI--lQIHsRKMnv~~DvNfeELaRsTddFN--GAQcKAVcVEAGMiALRr~atev~  401 (424)
T KOG0652|consen  326 ALLRSGRLDRKIEFPHPNEEARARI--LQIHSRKMNVSDDVNFEELARSTDDFN--GAQCKAVCVEAGMIALRRGATEVT  401 (424)
T ss_pred             HHhhcccccccccCCCCChHHHHHH--HHHhhhhcCCCCCCCHHHHhhcccccC--chhheeeehhhhHHHHhccccccc
Confidence            4322222        2334555555  233444444 78899999999999999  999999999999999999999999


Q ss_pred             hhhhhhhHHHH
Q psy11689        362 ADTANKPRIQR  372 (390)
Q Consensus       362 ~~~~~~~~~~~  372 (390)
                      .+||...++..
T Consensus       402 heDfmegI~eV  412 (424)
T KOG0652|consen  402 HEDFMEGILEV  412 (424)
T ss_pred             HHHHHHHHHHH
Confidence            99999998654

>KOG0731|consensus

Probab=100.00  E-value=9.5e-34  Score=291.90  Aligned_cols=241  Identities=21%  Similarity=0.352  Sum_probs=196.8

Q ss_pred             cCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc
Q psy11689        138 EEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP  217 (390)
Q Consensus       138 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~  217 (390)
                      +.+++|.||.|.+++|++|.|++.. +++|+.|+++|.+.|+|+||+||||||||.||+|+|.+++.||+.++++++...
T Consensus       305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~  383 (774)
T KOG0731|consen  305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM  383 (774)
T ss_pred             CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence            3457777999999999999999998 999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh------HHHHHHHhhcCCCcE---EEeccCHHHHHhcCchhHH
Q psy11689        218 YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY------REQTADNAKKPRIPR---TNGGYREQTADTANKPRIQ  288 (390)
Q Consensus       218 ~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~------~~~~~~~~~~~~~~~---i~~~~~~~~i~~t~~~~~~  288 (390)
                      ++|.....++.+|..|+...|||+|+||+|++...|.      .+...+...+..++.   ...+..+.++++||+++++
T Consensus       384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l  463 (774)
T KOG0731|consen  384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL  463 (774)
T ss_pred             hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence            9999999999999999999999999999999988773      111111122211111   1223456678999998875


Q ss_pred             -----HhHHHhhhh---cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccccc
Q psy11689        289 -----RTKREYREQ---TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQ  360 (390)
Q Consensus       289 -----r~~~~~l~~---l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i  360 (390)
                           |+.++....   +|+-.+|..|+.-+........+++||..+|.+|+||+  ||||.++|++|++.|++++...|
T Consensus       464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~--gadl~n~~neaa~~a~r~~~~~i  541 (774)
T KOG0731|consen  464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFS--GADLANLCNEAALLAARKGLREI  541 (774)
T ss_pred             CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCc--HHHHHhhhhHHHHHHHHhccCcc
Confidence                 444444333   55667777775332222222257899999999999999  99999999999999999999999


Q ss_pred             ChhhhhhhHHHHhcCcccccc
Q psy11689        361 TADTANKPRIQRIGNLSQRNR  381 (390)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~  381 (390)
                      +.++|..+..+.++|..++.+
T Consensus       542 ~~~~~~~a~~Rvi~G~~~~~~  562 (774)
T KOG0731|consen  542 GTKDLEYAIERVIAGMEKKSR  562 (774)
T ss_pred             chhhHHHHHHHHhccccccch
Confidence            999999999999999877543

>KOG0734|consensus

Probab=100.00  E-value=2.1e-33  Score=274.51  Aligned_cols=236  Identities=23%  Similarity=0.300  Sum_probs=194.0

Q ss_pred             CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcch
Q psy11689        140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV  219 (390)
Q Consensus       140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~  219 (390)
                      .++|+||.|.++.|+++++++.+ ++.|..|.++|-+-|+||||+||||||||.||+|+|.+.+.||++..++++-..++
T Consensus       300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V  378 (752)
T KOG0734|consen  300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV  378 (752)
T ss_pred             ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence            55667999999999999999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHH--HHhhcCCCcE---EEeccCHHHHHhcCchhHH-----H
Q psy11689        220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTA--DNAKKPRIPR---TNGGYREQTADTANKPRIQ-----R  289 (390)
Q Consensus       220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~--~~~~~~~~~~---i~~~~~~~~i~~t~~~~~~-----r  289 (390)
                      |.+.+.++.+|+.|+...||||||||+|++.++|......  ..-.+..+..   ......+.+|++||.|+.+     |
T Consensus       379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~R  458 (752)
T KOG0734|consen  379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTR  458 (752)
T ss_pred             cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcC
Confidence            9999999999999999999999999999999988543321  0001111000   1112344567889988875     4


Q ss_pred             hHHHhhhh---cCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhh
Q psy11689        290 TKREYREQ---TADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTA  365 (390)
Q Consensus       290 ~~~~~l~~---l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~  365 (390)
                      +.++....   .|+..+|..|+  +......+ .+++|+.-||+-|.||+  ||||++|++.|++.|+..+...++|+++
T Consensus       459 PGRFD~~v~Vp~PDv~GR~eIL--~~yl~ki~~~~~VD~~iiARGT~GFs--GAdLaNlVNqAAlkAa~dga~~VtM~~L  534 (752)
T KOG0734|consen  459 PGRFDRHVTVPLPDVRGRTEIL--KLYLSKIPLDEDVDPKIIARGTPGFS--GADLANLVNQAALKAAVDGAEMVTMKHL  534 (752)
T ss_pred             CCccceeEecCCCCcccHHHHH--HHHHhcCCcccCCCHhHhccCCCCCc--hHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence            44444433   45677788884  33333333 67899999999999999  9999999999999999999999999999


Q ss_pred             hhhHHHHhcCccccc
Q psy11689        366 NKPRIQRIGNLSQRN  380 (390)
Q Consensus       366 ~~~~~~~~~~~~~~~  380 (390)
                      .-+..+-..|.+-+-
T Consensus       535 E~akDrIlMG~ERks  549 (752)
T KOG0734|consen  535 EFAKDRILMGPERKS  549 (752)
T ss_pred             hhhhhheeecccccc
Confidence            999998888876553

>KOG0738|consensus

Probab=99.98  E-value=6.8e-33  Score=262.68  Aligned_cols=243  Identities=22%  Similarity=0.294  Sum_probs=189.0

Q ss_pred             chhhHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHH
Q psy11689        117 LNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVR  196 (390)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~  196 (390)
                      +.+.+.+.+....+++.|+         ||.|+.++|+-|++++.+|+..|+.|+.+ ..|.++||++||||||||+||+
T Consensus       194 Lve~lerdIl~~np~ikW~---------DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAK  263 (491)
T KOG0738|consen  194 LVEALERDILQRNPNIKWD---------DIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAK  263 (491)
T ss_pred             HHHHHHHHHhccCCCcChH---------hhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHH
Confidence            3345566777788899999         99999999999999999999999999965 4788999999999999999999


Q ss_pred             HHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHH---HHHhhcC------CC
Q psy11689        197 TLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQT---ADNAKKP------RI  267 (390)
Q Consensus       197 aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~---~~~~~~~------~~  267 (390)
                      |+|.+++..|+.++.+.+.++|.|++|+.++.+|..|+.+.|++|||||||+++..|.....   ...+...      ++
T Consensus       264 AvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~  343 (491)
T KOG0738|consen  264 AVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGV  343 (491)
T ss_pred             HHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999987743322   1111110      11


Q ss_pred             cEEE-eccCHHHHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHH
Q psy11689        268 PRTN-GGYREQTADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQ  340 (390)
Q Consensus       268 ~~i~-~~~~~~~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaD  340 (390)
                      .--. ....++++++||-|--+...+      ..+..+|+...|..++-.+... ....++++++.||++++|||  |+|
T Consensus       344 ~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~-~~~~~~~~~~~lae~~eGyS--GaD  420 (491)
T KOG0738|consen  344 QGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS-VELDDPVNLEDLAERSEGYS--GAD  420 (491)
T ss_pred             ccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc-ccCCCCccHHHHHHHhcCCC--hHH
Confidence            1111 123456678888764432221      2333477888887764333322 23367899999999999999  999


Q ss_pred             HHHHHHHHHHHHHHccc-----------------cccChhhhhhhHHHH
Q psy11689        341 NANTANKPRIQRTKREY-----------------REQTADTANKPRIQR  372 (390)
Q Consensus       341 L~~l~~~A~~~a~~r~~-----------------~~i~~~~~~~~~~~~  372 (390)
                      |.++|++|.+.+++|..                 ..+++.||++|+-+.
T Consensus       421 I~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v  469 (491)
T KOG0738|consen  421 ITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKV  469 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHc
Confidence            99999999999998731                 246777777776543

>KOG0729|consensus

Probab=99.97  E-value=9.4e-32  Score=243.97  Aligned_cols=215  Identities=23%  Similarity=0.320  Sum_probs=180.6

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY  218 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~  218 (390)
                      +.+++.|+||..++.+.+++.++.|+.+|+.|.++++.||.++|+|||||||||.+|+++|+..+..|+.+.++++..+|
T Consensus       172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqky  251 (435)
T KOG0729|consen  172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY  251 (435)
T ss_pred             CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHH
Confidence            44445599999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHHHhhhhc
Q psy11689        219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREYREQT  298 (390)
Q Consensus       219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l~~l  298 (390)
                      +|++...++++|+.|+..+.||||+||+|++.+.|++...                       ..+.+++|+++++++++
T Consensus       252 vgegarmvrelf~martkkaciiffdeidaiggarfddg~-----------------------ggdnevqrtmleli~ql  308 (435)
T KOG0729|consen  252 VGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGA-----------------------GGDNEVQRTMLELINQL  308 (435)
T ss_pred             hhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCC-----------------------CCcHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998876421                       12235666666666665


Q ss_pred             CCchhH---HHhhcccccccCC----------------------------------C-CCCCCcchhhhcCCCCCCCcHH
Q psy11689        299 ADTAHK---TRISRTNRGYREK----------------------------------T-ADTANKPRIPRTNRGYREYSAQ  340 (390)
Q Consensus       299 ~~~~~r---~~I~~~n~~~r~~----------------------------------~-~~~vdl~~la~~t~gfs~~gaD  340 (390)
                      +++..|   +++++||++....                                  . ..++-|+-||++++.-+  ||+
T Consensus       309 dgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnst--gae  386 (435)
T KOG0729|consen  309 DGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNST--GAE  386 (435)
T ss_pred             cCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCc--chH
Confidence            553333   5555666543211                                  1 23566788999999999  999


Q ss_pred             HHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCccc
Q psy11689        341 NANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQ  378 (390)
Q Consensus       341 L~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~~  378 (390)
                      |.++|.+|.++|++..+...|..||-++.-+.+-|.-+
T Consensus       387 irsvcteagmfairarrk~atekdfl~av~kvvkgy~k  424 (435)
T KOG0729|consen  387 IRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYAK  424 (435)
T ss_pred             HHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999888899999999998877766443

>KOG0728|consensus

Probab=99.97  E-value=7.4e-32  Score=242.73  Aligned_cols=226  Identities=23%  Similarity=0.325  Sum_probs=170.2

Q ss_pred             CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhH
Q psy11689        143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA  222 (390)
Q Consensus       143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~  222 (390)
                      ++-+||++.+.+++++.+++|.++|+.|..+|+..|.++|||||||+|||.|++++|+...+.|+.++++++..+|.|++
T Consensus       146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igeg  225 (404)
T KOG0728|consen  146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEG  225 (404)
T ss_pred             HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhh
Confidence            33899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH------HHHHHhhcC--CCcEEEeccCHHHHHhcCchhHHHhHHHh
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE------QTADNAKKP--RIPRTNGGYREQTADTANKPRIQRTKREY  294 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~------~~~~~~~~~--~~~~i~~~~~~~~i~~t~~~~~~r~~~~~  294 (390)
                      ...++++|-.|+.+.|+|||+||+|++...|.+.      +.+..+..+  .+--...+....+|.+|||-+++.+.+..
T Consensus       226 srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allr  305 (404)
T KOG0728|consen  226 SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLR  305 (404)
T ss_pred             HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcC
Confidence            9999999999999999999999999998766432      111111110  01111122222333444443332222211


Q ss_pred             hhh------cC--CchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhh
Q psy11689        295 REQ------TA--DTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTA  365 (390)
Q Consensus       295 l~~------l~--~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~  365 (390)
                      ...      +|  +...|..|+  ..+.|.+- ...+++..+|+...|.|  ||+++.+|.+|.++|.+..+--+|++||
T Consensus       306 pgridrkiefp~p~e~ar~~il--kihsrkmnl~rgi~l~kiaekm~gas--gaevk~vcteagm~alrerrvhvtqedf  381 (404)
T KOG0728|consen  306 PGRIDRKIEFPPPNEEARLDIL--KIHSRKMNLTRGINLRKIAEKMPGAS--GAEVKGVCTEAGMYALRERRVHVTQEDF  381 (404)
T ss_pred             CCcccccccCCCCCHHHHHHHH--HHhhhhhchhcccCHHHHHHhCCCCc--cchhhhhhhhhhHHHHHHhhccccHHHH
Confidence            111      11  223333342  22222222 34688999999999999  9999999999999999988889999999


Q ss_pred             hhhHHHH
Q psy11689        366 NKPRIQR  372 (390)
Q Consensus       366 ~~~~~~~  372 (390)
                      .-+.-..
T Consensus       382 emav~kv  388 (404)
T KOG0728|consen  382 EMAVAKV  388 (404)
T ss_pred             HHHHHHH
Confidence            9886443

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.9e-31  Score=269.26  Aligned_cols=254  Identities=20%  Similarity=0.357  Sum_probs=206.0

Q ss_pred             CCCchhhHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHH
Q psy11689        114 GIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTS  193 (390)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~  193 (390)
                      .+++.+...+...+....+.+.         |+.|.++.|+++.+.+.. ++.|..|..+|..-|+++||+||||||||.
T Consensus       129 ~~~~gkskak~~~~~~~~v~F~---------DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTL  198 (596)
T COG0465         129 AFSFGKSKAKLYLEDQVKVTFA---------DVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTL  198 (596)
T ss_pred             ccCCChHHHHHhcccccCcChh---------hhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHH
Confidence            4555665555555555556666         999999999999999987 999999999999999999999999999999


Q ss_pred             HHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh-----HHHHHHHhhcCCCc
Q psy11689        194 LVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY-----REQTADNAKKPRIP  268 (390)
Q Consensus       194 La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~-----~~~~~~~~~~~~~~  268 (390)
                      ||+++|.+.+.||+.++++++...++|-+...++++|..|++.+||||||||+|++...|.     .++..+...+..+.
T Consensus       199 LAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLv  278 (596)
T COG0465         199 LAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV  278 (596)
T ss_pred             HHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999987772     11111111111111


Q ss_pred             EEE---eccCHHHHHhcCchhHHHhHH-----Hhhh---hcCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCC
Q psy11689        269 RTN---GGYREQTADTANKPRIQRTKR-----EYRE---QTADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYRE  336 (390)
Q Consensus       269 ~i~---~~~~~~~i~~t~~~~~~r~~~-----~~l~---~l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~  336 (390)
                      ...   ....+.++++||||+++.+.+     +...   .+|+..+|..|..  .+.+.+. ..++|+..+|+.|+||+ 
T Consensus       279 EmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Ilk--vH~~~~~l~~~Vdl~~iAr~tpGfs-  355 (596)
T COG0465         279 EMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILK--VHAKNKPLAEDVDLKKIARGTPGFS-  355 (596)
T ss_pred             hhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHH--HHhhcCCCCCcCCHHHHhhhCCCcc-
Confidence            111   223456688999998864443     3332   2556677888854  3333333 67899999999999999 


Q ss_pred             CcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCcccccc
Q psy11689        337 YSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQRNR  381 (390)
Q Consensus       337 ~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~  381 (390)
                       ||||++++++|++.|++++...+++.+|..+..+.+-|.+++.+
T Consensus       356 -GAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~  399 (596)
T COG0465         356 -GADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSR  399 (596)
T ss_pred             -cchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence             99999999999999999999999999999999999999999886

>KOG0739|consensus

Probab=99.97  E-value=2.4e-31  Score=244.51  Aligned_cols=221  Identities=22%  Similarity=0.382  Sum_probs=175.9

Q ss_pred             hhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        123 RIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ..+..+.|++.|+         ||.|++..|+.|++++.+|.++|+.|.. ...|.+++|||||||||||+||+|+|.+.
T Consensus       121 sAIv~EKPNVkWs---------DVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEA  190 (439)
T KOG0739|consen  121 SAIVREKPNVKWS---------DVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEA  190 (439)
T ss_pred             hhhhccCCCCchh---------hhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence            3355678999999         9999999999999999999999999974 34678999999999999999999999999


Q ss_pred             ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHH--HHhhcC-CCcE---EEeccCH
Q psy11689        203 VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTA--DNAKKP-RIPR---TNGGYRE  276 (390)
Q Consensus       203 ~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~--~~~~~~-~~~~---i~~~~~~  276 (390)
                      +-.|+.+++++++++|.|++++.++.+|+.|+.++|+||||||+|++++.|.+++..  +.+... .+..   -.....+
T Consensus       191 nSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gv  270 (439)
T KOG0739|consen  191 NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGV  270 (439)
T ss_pred             CCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCce
Confidence            999999999999999999999999999999999999999999999999988654331  222111 0111   1122344


Q ss_pred             HHHHhcCchhHHHhH----HH--hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689        277 QTADTANKPRIQRTK----RE--YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI  350 (390)
Q Consensus       277 ~~i~~t~~~~~~r~~----~~--~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~  350 (390)
                      .++++||-|-.+...    ++  ....+|....|..++..+....+....+.|+..|++.|+|||  |+||.-+++.|.+
T Consensus       271 LVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGyS--GsDisivVrDalm  348 (439)
T KOG0739|consen  271 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYS--GSDISIVVRDALM  348 (439)
T ss_pred             EEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCC--cCceEEEehhhhh
Confidence            556666665543211    11  122356677777777666666666677899999999999999  9999999999999


Q ss_pred             HHHHc
Q psy11689        351 QRTKR  355 (390)
Q Consensus       351 ~a~~r  355 (390)
                      ..+++
T Consensus       349 ePvRk  353 (439)
T KOG0739|consen  349 EPVRK  353 (439)
T ss_pred             hhHHH
Confidence            98776

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.97  E-value=6.9e-31  Score=260.35  Aligned_cols=238  Identities=19%  Similarity=0.311  Sum_probs=187.1

Q ss_pred             cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .+.|++.|+         ||||++.+++++++.+.+|+.+++.|+.+++.+|+++|||||||||||++++++|++++.++
T Consensus       137 ~~~p~v~~~---------digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f  207 (398)
T PTZ00454        137 SEKPDVTYS---------DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF  207 (398)
T ss_pred             cCCCCCCHH---------HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence            356777787         99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH------HHHHHhhcC--CCcEEEeccCHHH
Q psy11689        207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE------QTADNAKKP--RIPRTNGGYREQT  278 (390)
Q Consensus       207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~------~~~~~~~~~--~~~~i~~~~~~~~  278 (390)
                      +.+.++++...|.|++++.++.+|..|+..+|+||||||+|.++..+...      .....+...  .+.......++.+
T Consensus       208 i~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~V  287 (398)
T PTZ00454        208 IRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKV  287 (398)
T ss_pred             EEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEE
Confidence            99999999999999999999999999999999999999999998654211      111111000  0000111223445


Q ss_pred             HHhcCchhHHHhH-----HH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689        279 ADTANKPRIQRTK-----RE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI  350 (390)
Q Consensus       279 i~~t~~~~~~r~~-----~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~  350 (390)
                      |++||+++.+.+.     ++   ....+|+...|..|+.... .+.....++|+..+|.+|+||+  |+||+++|++|++
T Consensus       288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~-~~~~l~~dvd~~~la~~t~g~s--gaDI~~l~~eA~~  364 (398)
T PTZ00454        288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT-SKMNLSEEVDLEDFVSRPEKIS--AADIAAICQEAGM  364 (398)
T ss_pred             EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH-hcCCCCcccCHHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence            6677766554332     22   1122556667777764322 2233466799999999999999  9999999999999


Q ss_pred             HHHHccccccChhhhhhhHHHHhcCc
Q psy11689        351 QRTKREYREQTADTANKPRIQRIGNL  376 (390)
Q Consensus       351 ~a~~r~~~~i~~~~~~~~~~~~~~~~  376 (390)
                      .|.++++..++++||.+++-+.+.+.
T Consensus       365 ~A~r~~~~~i~~~df~~A~~~v~~~~  390 (398)
T PTZ00454        365 QAVRKNRYVILPKDFEKGYKTVVRKT  390 (398)
T ss_pred             HHHHcCCCccCHHHHHHHHHHHHhcc
Confidence            99999999999999999998877664

>KOG0737|consensus

Probab=99.96  E-value=1.6e-29  Score=239.61  Aligned_cols=216  Identities=23%  Similarity=0.391  Sum_probs=168.8

Q ss_pred             cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689        127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERL-AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR  205 (390)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~La~aia~~~~~~  205 (390)
                      .....++|+         ||||++.+++.+++.+.+|+++|+.|... -..++.|+|||||||||||.||+++|.++|.+
T Consensus        84 p~~I~v~f~---------DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~  154 (386)
T KOG0737|consen   84 PSEIGVSFD---------DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGAN  154 (386)
T ss_pred             hhhceeehh---------hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCC
Confidence            344566677         99999999999999999999999999633 24578999999999999999999999999999


Q ss_pred             hhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH--HHHHHhhcC------CCcEEEeccCHH
Q psy11689        206 VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE--QTADNAKKP------RIPRTNGGYREQ  277 (390)
Q Consensus       206 ~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~--~~~~~~~~~------~~~~i~~~~~~~  277 (390)
                      |+.+..+.+.++|.|+.++.++.+|..|.+.+|+||||||+|++++.|...  +....+.+.      ++. -....++.
T Consensus       155 fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~-s~~~~rVl  233 (386)
T KOG0737|consen  155 FINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLS-SKDSERVL  233 (386)
T ss_pred             cceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhcccc-CCCCceEE
Confidence            999999999999999999999999999999999999999999999877322  222222111      111 11223466


Q ss_pred             HHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHH
Q psy11689        278 TADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQ  351 (390)
Q Consensus       278 ~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~  351 (390)
                      ++++||||.-++...      .....+|+...|..|+.. .....+..+++|+.++|+.|+|||  |.||+++|..|++.
T Consensus       234 VlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkv-iLk~e~~e~~vD~~~iA~~t~GyS--GSDLkelC~~Aa~~  310 (386)
T KOG0737|consen  234 VLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKV-ILKKEKLEDDVDLDEIAQMTEGYS--GSDLKELCRLAALR  310 (386)
T ss_pred             EEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHH-HhcccccCcccCHHHHHHhcCCCc--HHHHHHHHHHHhHh
Confidence            788899886532211      112226667777777533 223345568899999999999999  99999999999999


Q ss_pred             HHHc
Q psy11689        352 RTKR  355 (390)
Q Consensus       352 a~~r  355 (390)
                      .++.
T Consensus       311 ~ire  314 (386)
T KOG0737|consen  311 PIRE  314 (386)
T ss_pred             HHHH
Confidence            8654

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.96  E-value=4.6e-29  Score=248.01  Aligned_cols=239  Identities=22%  Similarity=0.316  Sum_probs=186.7

Q ss_pred             cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .+.+++.|+         +|+|++++++++.+.+..|+.+++.|+.+++.++.++|||||||||||++|+++|.+++.++
T Consensus       123 ~~~p~~~~~---------di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~  193 (389)
T PRK03992        123 IESPNVTYE---------DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF  193 (389)
T ss_pred             cCCCCCCHH---------HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE
Confidence            345566777         99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HHHHHHhhcC--CCcEEEeccCHHH
Q psy11689        207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQTADNAKKP--RIPRTNGGYREQT  278 (390)
Q Consensus       207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~~~~~~~~~--~~~~i~~~~~~~~  278 (390)
                      +.+.++++...|.|+.++.++.+|..|...+|+||||||+|.++..+..      ......+...  .+.......++.+
T Consensus       194 i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V  273 (389)
T PRK03992        194 IRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI  273 (389)
T ss_pred             EEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence            9999999999999999999999999999999999999999999865431      1111111110  0111111234556


Q ss_pred             HHhcCchhHHHhHH-----Hh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689        279 ADTANKPRIQRTKR-----EY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI  350 (390)
Q Consensus       279 i~~t~~~~~~r~~~-----~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~  350 (390)
                      |++||+++.+...+     +.   ...+|+...|..|+.... .......++++..+|+.|+||+  |+||+++|++|++
T Consensus       274 I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~-~~~~~~~~~~~~~la~~t~g~s--gadl~~l~~eA~~  350 (389)
T PRK03992        274 IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHT-RKMNLADDVDLEELAELTEGAS--GADLKAICTEAGM  350 (389)
T ss_pred             EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHh-ccCCCCCcCCHHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence            77888765533222     11   112556777777764322 1222345689999999999999  9999999999999


Q ss_pred             HHHHccccccChhhhhhhHHHHhcCcc
Q psy11689        351 QRTKREYREQTADTANKPRIQRIGNLS  377 (390)
Q Consensus       351 ~a~~r~~~~i~~~~~~~~~~~~~~~~~  377 (390)
                      .|++++...|+++||.+++-....+-.
T Consensus       351 ~a~~~~~~~i~~~d~~~A~~~~~~~~~  377 (389)
T PRK03992        351 FAIRDDRTEVTMEDFLKAIEKVMGKEE  377 (389)
T ss_pred             HHHHcCCCCcCHHHHHHHHHHHhcccc
Confidence            999999999999999999877655433

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.96  E-value=5.5e-29  Score=225.24  Aligned_cols=225  Identities=19%  Similarity=0.306  Sum_probs=178.4

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY  218 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~  218 (390)
                      ...+++||.|.++.|..++-++.+ +..|+.|..|   .|++||+|||||||||++|+++|++...|++.+...++.+.+
T Consensus       116 ~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh  191 (368)
T COG1223         116 SDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH  191 (368)
T ss_pred             ccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence            455666999999999999988887 8999998865   689999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC-ChhhHH---HHHHHhhcCC---CcEEEeccCHHHHHhcCchhHHHhH
Q psy11689        219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTY-NCEYRE---QTADNAKKPR---IPRTNGGYREQTADTANKPRIQRTK  291 (390)
Q Consensus       219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l-~~r~~~---~~~~~~~~~~---~~~i~~~~~~~~i~~t~~~~~~r~~  291 (390)
                      +|.+...++++|.+|+...|||+||||+|++. +.++.+   +++. +.+..   +--+..+.++.+|++||+|+++.+.
T Consensus       192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsE-iVNALLTelDgi~eneGVvtIaaTN~p~~LD~a  270 (368)
T COG1223         192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSE-IVNALLTELDGIKENEGVVTIAATNRPELLDPA  270 (368)
T ss_pred             hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHH-HHHHHHHhccCcccCCceEEEeecCChhhcCHH
Confidence            99999999999999999999999999999987 444332   1111 11111   1223345667789999999986444


Q ss_pred             H----H--hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHH-HHHHHHHHHHHccccccChhh
Q psy11689        292 R----E--YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNAN-TANKPRIQRTKREYREQTADT  364 (390)
Q Consensus       292 ~----~--~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~-l~~~A~~~a~~r~~~~i~~~~  364 (390)
                      .    +  ..-.+|+..+|..|+-.+....+.+. +.++..++++|.|||  |.||+. +++.|...|...++.+|+.+|
T Consensus       271 iRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-~~~~~~~~~~t~g~S--gRdikekvlK~aLh~Ai~ed~e~v~~ed  347 (368)
T COG1223         271 IRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-DADLRYLAAKTKGMS--GRDIKEKVLKTALHRAIAEDREKVERED  347 (368)
T ss_pred             HHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-ccCHHHHHHHhCCCC--chhHHHHHHHHHHHHHHHhchhhhhHHH
Confidence            3    1  12227888888888755554444433 477999999999999  999865 455666668888999999999


Q ss_pred             hhhhHHH
Q psy11689        365 ANKPRIQ  371 (390)
Q Consensus       365 ~~~~~~~  371 (390)
                      +.++.-+
T Consensus       348 ie~al~k  354 (368)
T COG1223         348 IEKALKK  354 (368)
T ss_pred             HHHHHHh
Confidence            9999876

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.96  E-value=3.9e-29  Score=252.99  Aligned_cols=307  Identities=19%  Similarity=0.231  Sum_probs=205.4

Q ss_pred             eeeCCCC-CccCcccccc----ccC-CcccchHHHHHHhhcCCccccccccccccchhhhcCCCCCCCCCCCC-chhhHh
Q psy11689         50 VIDLPTA-PQGRETELPF----TKL-NEEVELSENVQREEEGIAGENLQRGGGEEGIELREGGQRNGGEGGIG-LNERVQ  122 (390)
Q Consensus        50 ~i~ip~~-~~~r~~~l~~----~~~-~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~~~~~~~~~~~~~-~~~~~~  122 (390)
                      .+++|.| .++.++++.-    ... -++.++ +.|++.+.|++-.+++.....+-.    ........ .+. +.+...
T Consensus       136 ~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~-~~l~~~~~gls~~~~~~~~~~~~~----~~~~~~~~-~~~~i~~~k~  209 (489)
T CHL00195        136 VLEFPLPTESEIKKELTRLIKSLNIKIDSELL-ENLTRACQGLSLERIRRVLSKIIA----TYKTIDEN-SIPLILEEKK  209 (489)
T ss_pred             EEeecCcCHHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhCCCCHHHHHHHHHHHHH----HcCCCChh-hHHHHHHHHH
Confidence            5566664 4455555532    111 123445 889999999999888776443211    11111110 111 111111


Q ss_pred             hhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        123 RIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ..... .  ...++......+++|||++.+|+.+.+....   +.....+++++.++++|||||||||||++|+++|+++
T Consensus       210 q~~~~-~--~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~  283 (489)
T CHL00195        210 QIISQ-T--EILEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW  283 (489)
T ss_pred             HHHhh-h--ccccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            11110 0  1112222344455999999999999876543   2345567889999999999999999999999999999


Q ss_pred             ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh---HHHHHHHhhcCCCcEE-EeccCHHH
Q psy11689        203 VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY---REQTADNAKKPRIPRT-NGGYREQT  278 (390)
Q Consensus       203 ~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~---~~~~~~~~~~~~~~~i-~~~~~~~~  278 (390)
                      +.+++.+++..+.++|+|+++.+++++|..|...+||||||||+|.++..+.   .......+....++.+ ....++.+
T Consensus       284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v  363 (489)
T CHL00195        284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV  363 (489)
T ss_pred             CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence            9999999999999999999999999999999999999999999999876422   1111111111100000 12345667


Q ss_pred             HHhcCchhH-----HHhHHHh---hhhcCCchhHHHhhccccccc-CCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHH
Q psy11689        279 ADTANKPRI-----QRTKREY---REQTADTAHKTRISRTNRGYR-EKTADTANKPRIPRTNRGYREYSAQNANTANKPR  349 (390)
Q Consensus       279 i~~t~~~~~-----~r~~~~~---l~~l~~~~~r~~I~~~n~~~r-~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~  349 (390)
                      ++|||+++.     .|+.++.   ...+|+...|..|+....... .....+.|++.+|+.|+|||  ||||+++|.+|.
T Consensus       364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS--GAdI~~lv~eA~  441 (489)
T CHL00195        364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS--GAEIEQSIIEAM  441 (489)
T ss_pred             EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC--HHHHHHHHHHHH
Confidence            888888754     3433332   233667888888874443332 22345789999999999999  999999999999


Q ss_pred             HHHHHccccccChhhhhhhHHH
Q psy11689        350 IQRTKREYREQTADTANKPRIQ  371 (390)
Q Consensus       350 ~~a~~r~~~~i~~~~~~~~~~~  371 (390)
                      ..|..++ +.++.+||..++-+
T Consensus       442 ~~A~~~~-~~lt~~dl~~a~~~  462 (489)
T CHL00195        442 YIAFYEK-REFTTDDILLALKQ  462 (489)
T ss_pred             HHHHHcC-CCcCHHHHHHHHHh
Confidence            9988765 57899999988744

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.95  E-value=2.4e-28  Score=243.81  Aligned_cols=234  Identities=20%  Similarity=0.282  Sum_probs=180.4

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY  218 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~  218 (390)
                      +...+.||+|++.+++++.+.+.+|+.+++.|+.+++.++.++|||||||||||++++++|++++.+++.+.++++...|
T Consensus       178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~  257 (438)
T PTZ00361        178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY  257 (438)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence            33444599999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HHHHHHhhcC--CCcEEEeccCHHHHHhcCchhHHHh
Q psy11689        219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQTADNAKKP--RIPRTNGGYREQTADTANKPRIQRT  290 (390)
Q Consensus       219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~~~~~r~  290 (390)
                      .|+....++.+|..|....|+||||||+|+++..+..      ......+...  .+.......++.+|++||+++.+.+
T Consensus       258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp  337 (438)
T PTZ00361        258 LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP  337 (438)
T ss_pred             cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence            9999999999999999999999999999999865431      1111111000  0000001122334556666555433


Q ss_pred             HHH-----h---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccCh
Q psy11689        291 KRE-----Y---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTA  362 (390)
Q Consensus       291 ~~~-----~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~  362 (390)
                      .+.     .   ...+|+...|..|+.... .+....++++++.++..|+||+  ||||+++|++|++.|.++++..|++
T Consensus       338 aLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~-~k~~l~~dvdl~~la~~t~g~s--gAdI~~i~~eA~~~Alr~~r~~Vt~  414 (438)
T PTZ00361        338 ALIRPGRIDRKIEFPNPDEKTKRRIFEIHT-SKMTLAEDVDLEEFIMAKDELS--GADIKAICTEAGLLALRERRMKVTQ  414 (438)
T ss_pred             HhccCCeeEEEEEeCCCCHHHHHHHHHHHH-hcCCCCcCcCHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhcCCccCH
Confidence            321     1   112455677777764322 2223466799999999999999  9999999999999999999999999


Q ss_pred             hhhhhhHHHHhcC
Q psy11689        363 DTANKPRIQRIGN  375 (390)
Q Consensus       363 ~~~~~~~~~~~~~  375 (390)
                      +||.+|+.+....
T Consensus       415 ~D~~~A~~~v~~~  427 (438)
T PTZ00361        415 ADFRKAKEKVLYR  427 (438)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999776443

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.95  E-value=6.9e-28  Score=247.10  Aligned_cols=253  Identities=20%  Similarity=0.332  Sum_probs=193.3

Q ss_pred             CchhhHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHH
Q psy11689        116 GLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLV  195 (390)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La  195 (390)
                      .+.+...+....+.+.++|+         ||+|++.+++++.+++.. +++++.|.+++...+.++||+||||||||+++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~---------di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la  105 (495)
T TIGR01241        36 SFGKSKAKLLNEEKPKVTFK---------DVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA  105 (495)
T ss_pred             CCCCCccccccCCCCCCCHH---------HhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence            33333334444556677777         999999999999998887 89999999999999999999999999999999


Q ss_pred             HHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH-----HHHHHHhhcCCCc--
Q psy11689        196 RTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR-----EQTADNAKKPRIP--  268 (390)
Q Consensus       196 ~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~-----~~~~~~~~~~~~~--  268 (390)
                      +++|.+++.+++.++++++...+.|.+.+.++.+|..|+..+|+||||||+|.+...+..     ........+..+.  
T Consensus       106 ~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~  185 (495)
T TIGR01241       106 KAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM  185 (495)
T ss_pred             HHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhh
Confidence            999999999999999999888889999999999999999999999999999999865532     1111111111111  


Q ss_pred             -EEEeccCHHHHHhcCchhHHHh-----HHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcH
Q psy11689        269 -RTNGGYREQTADTANKPRIQRT-----KREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSA  339 (390)
Q Consensus       269 -~i~~~~~~~~i~~t~~~~~~r~-----~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~ga  339 (390)
                       ......++.+|++||+++.+.+     .++.   ...+|+...|..|+..... ......++++..+|..|.||+  |+
T Consensus       186 d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~-~~~~~~~~~l~~la~~t~G~s--ga  262 (495)
T TIGR01241       186 DGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK-NKKLAPDVDLKAVARRTPGFS--GA  262 (495)
T ss_pred             ccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHh-cCCCCcchhHHHHHHhCCCCC--HH
Confidence             1112234566788888765333     2221   1125566777777533221 122245788999999999999  99


Q ss_pred             HHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCcccccc
Q psy11689        340 QNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQRNR  381 (390)
Q Consensus       340 DL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~  381 (390)
                      ||+++|++|++.|++++...++.++|..++.+...|.+.+.+
T Consensus       263 dl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~  304 (495)
T TIGR01241       263 DLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSR  304 (495)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccc
Confidence            999999999999999998899999999999999888766544

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG0651|consensus

Probab=99.95  E-value=2.8e-28  Score=225.62  Aligned_cols=232  Identities=22%  Similarity=0.306  Sum_probs=175.2

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY  218 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~  218 (390)
                      ....|+.++|+..+..++.+.+..|+..++.|.++++.+|.+++||||||+|||.+++++|...+++++.+.++.+.++|
T Consensus       127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky  206 (388)
T KOG0651|consen  127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY  206 (388)
T ss_pred             cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence            45566699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH------HhhcC--CCcEEEeccCHHHHHhcCchhHHHh
Q psy11689        219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTAD------NAKKP--RIPRTNGGYREQTADTANKPRIQRT  290 (390)
Q Consensus       219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~------~~~~~--~~~~i~~~~~~~~i~~t~~~~~~r~  290 (390)
                      .|++.+.|++.|..|+.+.|||||+||+|++.+.++++.+..      .+.++  ++--...-+++.+|.++|+|+.+.+
T Consensus       207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp  286 (388)
T KOG0651|consen  207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP  286 (388)
T ss_pred             cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence            999999999999999999999999999999998875543211      11000  0111111233334444444443322


Q ss_pred             HHHhhhh--------cCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccC
Q psy11689        291 KREYREQ--------TADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQT  361 (390)
Q Consensus       291 ~~~~l~~--------l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~  361 (390)
                      .+..-..        +++...|..|  ...+.+... ..++|.+.+.+..+||.  |+|+.+.|++|.+.|++..+..+-
T Consensus       287 aLlRpGRldrk~~iPlpne~~r~~I--~Kih~~~i~~~Geid~eaivK~~d~f~--gad~rn~~tEag~Fa~~~~~~~vl  362 (388)
T KOG0651|consen  287 ALLRPGRLDRKVEIPLPNEQARLGI--LKIHVQPIDFHGEIDDEAILKLVDGFN--GADLRNVCTEAGMFAIPEERDEVL  362 (388)
T ss_pred             hhcCCccccceeccCCcchhhceee--EeeccccccccccccHHHHHHHHhccC--hHHHhhhcccccccccchhhHHHh
Confidence            2211111        1122222222  111111111 35688899999999999  999999999999999999999999


Q ss_pred             hhhhhhhHHHHhc
Q psy11689        362 ADTANKPRIQRIG  374 (390)
Q Consensus       362 ~~~~~~~~~~~~~  374 (390)
                      ++++.++...+.-
T Consensus       363 ~Ed~~k~vrk~~~  375 (388)
T KOG0651|consen  363 HEDFMKLVRKQAD  375 (388)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998866643

>CHL00176 ftsH cell division protein; Validated

Probab=99.94  E-value=3.3e-27  Score=245.83  Aligned_cols=236  Identities=23%  Similarity=0.330  Sum_probs=185.7

Q ss_pred             CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchh
Q psy11689        141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVG  220 (390)
Q Consensus       141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g  220 (390)
                      ..|+|++|+++.++++.+.+.. ++.++.|..++...+.++||+||||||||++|+++|.+++.+++.++++++...+.|
T Consensus       180 ~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g  258 (638)
T CHL00176        180 ITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG  258 (638)
T ss_pred             CCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhh
Confidence            4444999999999999998877 888999999999999999999999999999999999999999999999998888888


Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHh-
Q psy11689        221 EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNAKKPRIPRTNGGYREQTADTANKPRIQRT-  290 (390)
Q Consensus       221 ~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~-  290 (390)
                      .....++.+|..|+...||||||||+|++...+..         ......+... +-......++.++++||+++.+.+ 
T Consensus       259 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~-~dg~~~~~~ViVIaaTN~~~~LD~A  337 (638)
T CHL00176        259 VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTE-MDGFKGNKGVIVIAATNRVDILDAA  337 (638)
T ss_pred             hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhh-hccccCCCCeeEEEecCchHhhhhh
Confidence            88888999999999999999999999999754321         1111111110 001112344566777888765433 


Q ss_pred             ----HHHhh---hhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChh
Q psy11689        291 ----KREYR---EQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTAD  363 (390)
Q Consensus       291 ----~~~~l---~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~  363 (390)
                          .++..   ..+|+...|..|+...... ....+++++..+|++|.||+  |+||++++++|++.|++++...+|++
T Consensus       338 LlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-~~~~~d~~l~~lA~~t~G~s--gaDL~~lvneAal~a~r~~~~~It~~  414 (638)
T CHL00176        338 LLRPGRFDRQITVSLPDREGRLDILKVHARN-KKLSPDVSLELIARRTPGFS--GADLANLLNEAAILTARRKKATITMK  414 (638)
T ss_pred             hhccccCceEEEECCCCHHHHHHHHHHHHhh-cccchhHHHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence                22221   2256677887776433322 23356788999999999999  99999999999999999999999999


Q ss_pred             hhhhhHHHHhcCcccccc
Q psy11689        364 TANKPRIQRIGNLSQRNR  381 (390)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~  381 (390)
                      +|..+..+.+.|.+.+..
T Consensus       415 dl~~Ai~rv~~g~~~~~~  432 (638)
T CHL00176        415 EIDTAIDRVIAGLEGTPL  432 (638)
T ss_pred             HHHHHHHHHHhhhccCcc
Confidence            999999999999877644

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.94  E-value=6.9e-27  Score=231.05  Aligned_cols=230  Identities=24%  Similarity=0.348  Sum_probs=177.4

Q ss_pred             ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      +.+.+.|+         +++|++++++++.+.+..++.+++.|..+++.++.++||+||||||||++++++|++++.+++
T Consensus       115 ~~p~~~~~---------di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~  185 (364)
T TIGR01242       115 ERPNVSYE---------DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI  185 (364)
T ss_pred             cCCCCCHH---------HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence            44566666         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------H----HHHHHhhcCCCcEEEeccCHH
Q psy11689        208 AASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------E----QTADNAKKPRIPRTNGGYREQ  277 (390)
Q Consensus       208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~----~~~~~~~~~~~~~i~~~~~~~  277 (390)
                      .+.+.++...+.|+....++.+|..|....|+||||||+|.+...+..      .    ...+.+....  ......++.
T Consensus       186 ~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~v~  263 (364)
T TIGR01242       186 RVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD--GFDPRGNVK  263 (364)
T ss_pred             ecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh--CCCCCCCEE
Confidence            998888888889998899999999999999999999999998754321      1    1111111100  000112344


Q ss_pred             HHHhcCchhHH-----HhHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHH
Q psy11689        278 TADTANKPRIQ-----RTKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPR  349 (390)
Q Consensus       278 ~i~~t~~~~~~-----r~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~  349 (390)
                      +++++|+++..     ++.++.   ....|+...|..|+.... ......+++++..+++.|+||+  |+||.++|++|+
T Consensus       264 vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~-~~~~l~~~~~~~~la~~t~g~s--g~dl~~l~~~A~  340 (364)
T TIGR01242       264 VIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT-RKMKLAEDVDLEAIAKMTEGAS--GADLKAICTEAG  340 (364)
T ss_pred             EEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH-hcCCCCccCCHHHHHHHcCCCC--HHHHHHHHHHHH
Confidence            56666655432     222211   122556677777753322 1223345689999999999999  999999999999


Q ss_pred             HHHHHccccccChhhhhhhHHH
Q psy11689        350 IQRTKREYREQTADTANKPRIQ  371 (390)
Q Consensus       350 ~~a~~r~~~~i~~~~~~~~~~~  371 (390)
                      +.|.++++..|+++||.++.-.
T Consensus       341 ~~a~~~~~~~i~~~d~~~a~~~  362 (364)
T TIGR01242       341 MFAIREERDYVTMDDFIKAVEK  362 (364)
T ss_pred             HHHHHhCCCccCHHHHHHHHHH
Confidence            9999999999999999998754

Many proteins may score above the trusted cutoff because an internal

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.93  E-value=2.2e-26  Score=252.45  Aligned_cols=209  Identities=14%  Similarity=0.066  Sum_probs=151.9

Q ss_pred             HhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc------------------------------
Q psy11689        169 EFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY------------------------------  218 (390)
Q Consensus       169 ~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~------------------------------  218 (390)
                      ....+|..+++||||+||||||||+||+|+|+++++|++.+++++++..+                              
T Consensus      1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206       1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred             HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence            34578899999999999999999999999999999999999999887543                              


Q ss_pred             -----------hhhHH--HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc-C-CCcEEEeccCHHHHHhcC
Q psy11689        219 -----------VGEAE--QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK-P-RIPRTNGGYREQTADTAN  283 (390)
Q Consensus       219 -----------~g~~~--~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~-~-~~~~i~~~~~~~~i~~t~  283 (390)
                                 .+.++  ..++.+|+.|+..+||||+|||||++............+.+ . +........++.++|+||
T Consensus      1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATN 1780 (2281)
T CHL00206       1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTH 1780 (2281)
T ss_pred             hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCC
Confidence                       11222  24888999999999999999999999865322111111111 1 110011234567799999


Q ss_pred             chhHHHhHHHhhhh--------cCCchhHHHhhcccccccC-CC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHH
Q psy11689        284 KPRIQRTKREYREQ--------TADTAHKTRISRTNRGYRE-KT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRT  353 (390)
Q Consensus       284 ~~~~~r~~~~~l~~--------l~~~~~r~~I~~~n~~~r~-~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~  353 (390)
                      +|+.+.+.+...+.        +|+..+|..++..-...+. .. ...+|+..+|+.|.||+  ||||++||++|++.|+
T Consensus      1781 RPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfS--GADLanLvNEAaliAi 1858 (2281)
T CHL00206       1781 IPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSN--ARDLVALTNEALSISI 1858 (2281)
T ss_pred             CcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCC--HHHHHHHHHHHHHHHH
Confidence            98876555533222        2233444433211111111 11 23368999999999999  9999999999999999


Q ss_pred             HccccccChhhhhhhHHHHhcCcccc
Q psy11689        354 KREYREQTADTANKPRIQRIGNLSQR  379 (390)
Q Consensus       354 ~r~~~~i~~~~~~~~~~~~~~~~~~~  379 (390)
                      +++...|+++++..|..+++.|.+.+
T Consensus      1859 rq~ks~Id~~~I~~Al~Rq~~g~~~~ 1884 (2281)
T CHL00206       1859 TQKKSIIDTNTIRSALHRQTWDLRSQ 1884 (2281)
T ss_pred             HcCCCccCHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999998644

>KOG0740|consensus

Probab=99.93  E-value=1.2e-26  Score=227.17  Aligned_cols=224  Identities=21%  Similarity=0.315  Sum_probs=178.6

Q ss_pred             hHhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHH
Q psy11689        120 RVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLA  199 (390)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia  199 (390)
                      .+..++......+.|+         |++|++..++.+.+.+.+|+..++.|..+. .+.+++||.||||+|||+|++|+|
T Consensus       138 ~i~~EI~~~~~~v~~~---------di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiA  207 (428)
T KOG0740|consen  138 GIRNEIGDTLRNVGWD---------DIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIA  207 (428)
T ss_pred             HHHHHHhccCCccccc---------CCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHH
Confidence            3455566667778888         999999999999999999999999999765 567899999999999999999999


Q ss_pred             HhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHH--H-----HHhhcCCCcEEEe
Q psy11689        200 AHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQT--A-----DNAKKPRIPRTNG  272 (390)
Q Consensus       200 ~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~--~-----~~~~~~~~~~i~~  272 (390)
                      .+++..|+.++.+.+.++|+|+.++.++.+|..|+..+|+|+|+||+|+++..|..+..  .     +.+..........
T Consensus       208 sE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~  287 (428)
T KOG0740|consen  208 TESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAP  287 (428)
T ss_pred             hhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCC
Confidence            99999999999999999999999999999999999999999999999999988743321  1     1111111222233


Q ss_pred             ccCHHHHHhcCchhHH------HhHHHhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHH
Q psy11689        273 GYREQTADTANKPRIQ------RTKREYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTAN  346 (390)
Q Consensus       273 ~~~~~~i~~t~~~~~~------r~~~~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~  346 (390)
                      ..++.++++||+|.-.      |........+|+...|..++..-.........+.|++.+++.|+||+  |+||.++|+
T Consensus       288 ~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegys--gsdi~~l~k  365 (428)
T KOG0740|consen  288 DDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYS--GSDITALCK  365 (428)
T ss_pred             CCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcc--cccHHHHHH
Confidence            4577788888887653      22223334577788888887444444445566788999999999999  999999999


Q ss_pred             HHHHHHHHc
Q psy11689        347 KPRIQRTKR  355 (390)
Q Consensus       347 ~A~~~a~~r  355 (390)
                      +|++.-.+.
T Consensus       366 ea~~~p~r~  374 (428)
T KOG0740|consen  366 EAAMGPLRE  374 (428)
T ss_pred             HhhcCchhh
Confidence            999875443

>KOG0730|consensus

Probab=99.91  E-value=1.2e-24  Score=218.98  Aligned_cols=220  Identities=23%  Similarity=0.344  Sum_probs=172.6

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHH
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAE  223 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~  223 (390)
                      +++||+......+++.+.+|+.++..+..+++++|+++|+|||||+|||.+++++|++.+..++.+++++++.++.|+++
T Consensus       184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte  263 (693)
T KOG0730|consen  184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE  263 (693)
T ss_pred             cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC-CeEEEEcCCCCCCChhhHHHH-HHHhhcCC---CcEEEeccCHHHHHhcCchhHHHhHHH-----
Q psy11689        224 QNVTQLFHRARLAA-PAILFIDEIERTYNCEYREQT-ADNAKKPR---IPRTNGGYREQTADTANKPRIQRTKRE-----  293 (390)
Q Consensus       224 ~~i~~~f~~A~~~~-p~il~lDEid~~l~~r~~~~~-~~~~~~~~---~~~i~~~~~~~~i~~t~~~~~~r~~~~-----  293 (390)
                      ++++++|+.|.+++ |+++|+||+|++++++..... ...+....   .--.....++.+++++|+|.-+.+.+.     
T Consensus       264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd  343 (693)
T KOG0730|consen  264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFD  343 (693)
T ss_pred             HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCc
Confidence            99999999999999 999999999999986543222 11111000   000112233455777887776544443     


Q ss_pred             --hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHH
Q psy11689        294 --YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQ  371 (390)
Q Consensus       294 --~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~  371 (390)
                        .....|+..+|..|+...... .+..+++++.++|..|+||+  ||||.++|++|++.+.++     ++++|..+..+
T Consensus       344 ~ev~IgiP~~~~RldIl~~l~k~-~~~~~~~~l~~iA~~thGyv--GaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~  415 (693)
T KOG0730|consen  344 REVEIGIPGSDGRLDILRVLTKK-MNLLSDVDLEDIAVSTHGYV--GADLAALCREASLQATRR-----TLEIFQEALMG  415 (693)
T ss_pred             ceeeecCCCchhHHHHHHHHHHh-cCCcchhhHHHHHHHccchh--HHHHHHHHHHHHHHHhhh-----hHHHHHHHHhc
Confidence              222255666777764222211 12236799999999999999  999999999999999888     67777776643

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.91  E-value=2.1e-24  Score=226.81  Aligned_cols=231  Identities=23%  Similarity=0.337  Sum_probs=182.3

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ  224 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~  224 (390)
                      ++.|++..++.+.+.+.+ ...+..+..++...+.+++|+||||||||++++++|.+++.+++.+++.++...+.+....
T Consensus       153 di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~  231 (644)
T PRK10733        153 DVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGAS  231 (644)
T ss_pred             HHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHH
Confidence            999999999999999987 6677788878878889999999999999999999999999999999999988888888889


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHH---
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKR---  292 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~---  292 (390)
                      .++.+|..|+..+|+||||||+|.+...+..         ......+.. .+-......++.++++||+|+.+.+.+   
T Consensus       232 ~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~-~mdg~~~~~~vivIaaTN~p~~lD~Al~Rp  310 (644)
T PRK10733        232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV-EMDGFEGNEGIIVIAATNRPDVLDPALLRP  310 (644)
T ss_pred             HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHH-hhhcccCCCCeeEEEecCChhhcCHHHhCC
Confidence            9999999999999999999999999765432         111111111 011112234566788888887643332   


Q ss_pred             --Hhh---hhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhh
Q psy11689        293 --EYR---EQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANK  367 (390)
Q Consensus       293 --~~l---~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~  367 (390)
                        +..   ..+|+...|..|+.... .+.....++|+..+|+.|.||+  ||||+++|++|++.|++++...+++++|.+
T Consensus       311 gRfdr~i~v~~Pd~~~R~~Il~~~~-~~~~l~~~~d~~~la~~t~G~s--gadl~~l~~eAa~~a~r~~~~~i~~~d~~~  387 (644)
T PRK10733        311 GRFDRQVVVGLPDVRGREQILKVHM-RRVPLAPDIDAAIIARGTPGFS--GADLANLVNEAALFAARGNKRVVSMVEFEK  387 (644)
T ss_pred             cccceEEEcCCCCHHHHHHHHHHHh-hcCCCCCcCCHHHHHhhCCCCC--HHHHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence              221   22556667877764332 2223356789999999999999  999999999999999999999999999999


Q ss_pred             hHHHHhcCccccc
Q psy11689        368 PRIQRIGNLSQRN  380 (390)
Q Consensus       368 ~~~~~~~~~~~~~  380 (390)
                      +......|.+.+.
T Consensus       388 a~~~v~~g~~~~~  400 (644)
T PRK10733        388 AKDKIMMGAERRS  400 (644)
T ss_pred             HHHHHhccccccc
Confidence            9998888887654

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.90  E-value=4.6e-24  Score=215.96  Aligned_cols=234  Identities=21%  Similarity=0.314  Sum_probs=165.8

Q ss_pred             ccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689        126 EGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR  205 (390)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~  205 (390)
                      ..+.|++.|+         +|+|++..++++++.+..|+.+++.|..+++.+++++|||||||||||++++++|++++.+
T Consensus       173 ~~~~p~v~~~---------dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       173 LEEVPDVTYA---------DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             eecCCCCCHH---------HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            3445666666         9999999999999999999999999999999999999999999999999999999987644


Q ss_pred             ----------hhccccccccCcchhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhH---HHHHHHhhcCC--
Q psy11689        206 ----------VLAASAAQLYSPYVGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYR---EQTADNAKKPR--  266 (390)
Q Consensus       206 ----------~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~---~~~~~~~~~~~--  266 (390)
                                |+.+..+++...|.|+.++.++.+|..|+..    .|+||||||+|+++..+..   .+....+....  
T Consensus       244 i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~  323 (512)
T TIGR03689       244 IGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS  323 (512)
T ss_pred             cccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence                      4466777888999999999999999998764    7999999999999876532   11111111111  


Q ss_pred             -CcEEEeccCHHHHHhcCchhHH-----HhHHHh---hhhcCCchhHHHhhcccccccCCC---------CCCCCc----
Q psy11689        267 -IPRTNGGYREQTADTANKPRIQ-----RTKREY---REQTADTAHKTRISRTNRGYREKT---------ADTANK----  324 (390)
Q Consensus       267 -~~~i~~~~~~~~i~~t~~~~~~-----r~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~---------~~~vdl----  324 (390)
                       +-.+....++.+|++||+++.+     |+.++.   ....|+...+..|+..........         ....++    
T Consensus       324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~  403 (512)
T TIGR03689       324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALI  403 (512)
T ss_pred             HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHH
Confidence             1111222345668888887664     333332   122455666766653221110000         000011    


Q ss_pred             -------------------------chhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc----ccccChhhhhhhHH
Q psy11689        325 -------------------------PRIPRTNRGYREYSAQNANTANKPRIQRTKRE----YREQTADTANKPRI  370 (390)
Q Consensus       325 -------------------------~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~----~~~i~~~~~~~~~~  370 (390)
                                               .+....++.||  ||+|+++|.+|...|..+.    ..-++++|+..++.
T Consensus       404 ~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~s--Ga~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~  476 (512)
T TIGR03689       404 QRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVS--GAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVL  476 (512)
T ss_pred             HHHHHHHhhhhcccceeEEEecCCceeeEeeccccc--HHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHH
Confidence                                     11223578899  9999999999999988773    45788999988874

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>KOG0732|consensus

Probab=99.90  E-value=4e-24  Score=226.22  Aligned_cols=219  Identities=23%  Similarity=0.365  Sum_probs=169.4

Q ss_pred             CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----cchhcccccccc
Q psy11689        141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----YRVLAASAAQLY  215 (390)
Q Consensus       141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~~~~~i~~~~~~  215 (390)
                      +.|++|||++.++..+++.+..|+.||+.|.++.+.+|+++|++||||||||..|+++|..+.     ..|+.-++++..
T Consensus       262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l  341 (1080)
T KOG0732|consen  262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL  341 (1080)
T ss_pred             cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh
Confidence            344499999999999999999999999999999999999999999999999999999997763     567788889999


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH--HHHHhhcCCCcEE---EeccCHHHHHhcCchhHH--
Q psy11689        216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQ--TADNAKKPRIPRT---NGGYREQTADTANKPRIQ--  288 (390)
Q Consensus       216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~--~~~~~~~~~~~~i---~~~~~~~~i~~t~~~~~~--  288 (390)
                      ++|+|+.+.+++.+|..|++.+|+|||+||||.+.+.|++.+  +...+....+...   ...-.+.+|++|||++-.  
T Consensus       342 skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dp  421 (1080)
T KOG0732|consen  342 SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDP  421 (1080)
T ss_pred             ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccch
Confidence            999999999999999999999999999999999998885433  2223322222221   112234568888887654  


Q ss_pred             ---HhHH---HhhhhcCCchhHHHhh-cccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccC
Q psy11689        289 ---RTKR---EYREQTADTAHKTRIS-RTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQT  361 (390)
Q Consensus       289 ---r~~~---~~l~~l~~~~~r~~I~-~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~  361 (390)
                         |+.+   ++...+++...|..|+ .-++.|. .+...--+..+|+.|.||-  ||||++||..|++.+.++....+.
T Consensus       422 aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-~~i~~~l~~~la~~t~gy~--gaDlkaLCTeAal~~~~r~~Pq~y  498 (1080)
T KOG0732|consen  422 ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-PPISRELLLWLAEETSGYG--GADLKALCTEAALIALRRSFPQIY  498 (1080)
T ss_pred             hhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-CCCCHHHHHHHHHhccccc--hHHHHHHHHHHhhhhhccccCeee
Confidence               3333   2223355666665554 3444444 3333345678999999999  999999999999999999755443


Q ss_pred             h
Q psy11689        362 A  362 (390)
Q Consensus       362 ~  362 (390)
                      +
T Consensus       499 ~  499 (1080)
T KOG0732|consen  499 S  499 (1080)
T ss_pred             c
Confidence            3

>KOG0741|consensus

Probab=99.89  E-value=2.7e-24  Score=210.81  Aligned_cols=234  Identities=19%  Similarity=0.239  Sum_probs=176.1

Q ss_pred             CccChHHHHHHH-HHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch-hccccccccCcchhhH
Q psy11689        145 ELGGLKGVRALM-EKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV-LAASAAQLYSPYVGEA  222 (390)
Q Consensus       145 ~i~g~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~-~~i~~~~~~~~~~g~~  222 (390)
                      .|||++.--..+ +.++..-.--|+..+++|+++-+|+|||||||||||.+|+.|..-++..- ..+++++++++|+|++
T Consensus       222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeS  301 (744)
T KOG0741|consen  222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGES  301 (744)
T ss_pred             ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhccc
Confidence            378877655444 44444434457888999999999999999999999999999998887644 4578999999999999


Q ss_pred             HHHHHHHHHHHHhc--------CCeEEEEcCCCCCCChhhHH----HHHHHhhcCCCcEEEec---cCHHHHHhcCchhH
Q psy11689        223 EQNVTQLFHRARLA--------APAILFIDEIERTYNCEYRE----QTADNAKKPRIPRTNGG---YREQTADTANKPRI  287 (390)
Q Consensus       223 ~~~i~~~f~~A~~~--------~p~il~lDEid~~l~~r~~~----~~~~~~~~~~~~~i~~~---~~~~~i~~t~~~~~  287 (390)
                      |++++++|++|..-        .--||++||+|+++..|.+.    .+.+.+.+..++.+.+-   +...+|+.|||+++
T Consensus       302 E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl  381 (744)
T KOG0741|consen  302 EENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL  381 (744)
T ss_pred             HHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh
Confidence            99999999998432        34599999999999777542    23344444444443332   34556889999998


Q ss_pred             HHhHHHh--------hhhcCCchhHHHhh---cccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc
Q psy11689        288 QRTKREY--------REQTADTAHKTRIS---RTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKRE  356 (390)
Q Consensus       288 ~r~~~~~--------l~~l~~~~~r~~I~---~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~  356 (390)
                      +...+..        ...+|+..+|.+|+   +..........+|+|+.+||.+|..||  ||+|+.|++.|...|.-|.
T Consensus       382 IDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfS--GAEleglVksA~S~A~nR~  459 (744)
T KOG0741|consen  382 IDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFS--GAELEGLVKSAQSFAMNRH  459 (744)
T ss_pred             HHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHhh
Confidence            6444422        22378888888875   333344455688999999999999999  9999999999999998772


Q ss_pred             ---------------ccccChhhhhhhH--HHHhcCccccc
Q psy11689        357 ---------------YREQTADTANKPR--IQRIGNLSQRN  380 (390)
Q Consensus       357 ---------------~~~i~~~~~~~~~--~~~~~~~~~~~  380 (390)
                                     .-+|+++||-.+.  ++-.||.++..
T Consensus       460 vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~  500 (744)
T KOG0741|consen  460 VKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEED  500 (744)
T ss_pred             hccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHH
Confidence                           2278888988887  66678877654

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.89  E-value=3.8e-23  Score=221.32  Aligned_cols=211  Identities=26%  Similarity=0.430  Sum_probs=160.8

Q ss_pred             CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchh
Q psy11689        141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVG  220 (390)
Q Consensus       141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g  220 (390)
                      ..+++|+|++.+++.+.+.+.+++.+++.|+++++.++.++|||||||||||+|++++|++.+.+++.++++++...+.|
T Consensus       175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g  254 (733)
T TIGR01243       175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYG  254 (733)
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccccc
Confidence            34449999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HHHHHHhhcCCCcEEEeccCHHHHHhcCchhHH-----H
Q psy11689        221 EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQTADNAKKPRIPRTNGGYREQTADTANKPRIQ-----R  289 (390)
Q Consensus       221 ~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~-----r  289 (390)
                      +.++.++.+|..|....|+||||||+|.+...+..      ......+... +........+.++++||+++.+     +
T Consensus       255 ~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~-ld~l~~~~~vivI~atn~~~~ld~al~r  333 (733)
T TIGR01243       255 ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTL-MDGLKGRGRVIVIGATNRPDALDPALRR  333 (733)
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHH-hhccccCCCEEEEeecCChhhcCHHHhC
Confidence            99999999999999999999999999999865432      1111111110 0001111223445566665432     2


Q ss_pred             hHHH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy11689        290 TKRE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR  355 (390)
Q Consensus       290 ~~~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r  355 (390)
                      +.++   ....+|+...|..|+..... ......++++..+++.|+||+  |+||..++..|++.+.++
T Consensus       334 ~gRfd~~i~i~~P~~~~R~~Il~~~~~-~~~l~~d~~l~~la~~t~G~~--gadl~~l~~~a~~~al~r  399 (733)
T TIGR01243       334 PGRFDREIVIRVPDKRARKEILKVHTR-NMPLAEDVDLDKLAEVTHGFV--GADLAALAKEAAMAALRR  399 (733)
T ss_pred             chhccEEEEeCCcCHHHHHHHHHHHhc-CCCCccccCHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHH
Confidence            2222   12235566677777542221 122355788999999999999  999999999999998776

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.83  E-value=6.9e-21  Score=182.77  Aligned_cols=225  Identities=16%  Similarity=0.096  Sum_probs=148.1

Q ss_pred             CCCc-cChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhh
Q psy11689        143 VPEL-GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE  221 (390)
Q Consensus       143 ~~~i-~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~  221 (390)
                      |+++ +|+--.+..+.+++....+.  ....+++++|.+++||||||||||++++++|++++.+++.++++++.++|.|+
T Consensus       114 f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGE  191 (413)
T PLN00020        114 FDNLVGGYYIAPAFMDKVAVHIAKN--FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGE  191 (413)
T ss_pred             hhhhcCccccCHHHHHHHHHHHHhh--hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCc
Confidence            3355 66666666666555332221  12236789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-----cCCeEEEEcCCCCCCChhhHH------HHH-HHhhcC--CCc---------EEEeccCHHH
Q psy11689        222 AEQNVTQLFHRARL-----AAPAILFIDEIERTYNCEYRE------QTA-DNAKKP--RIP---------RTNGGYREQT  278 (390)
Q Consensus       222 ~~~~i~~~f~~A~~-----~~p~il~lDEid~~l~~r~~~------~~~-~~~~~~--~~~---------~i~~~~~~~~  278 (390)
                      +++.++++|..|..     .+||||||||+|++++.+...      +.. ..+.+.  ..+         ......++.+
T Consensus       192 sEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~V  271 (413)
T PLN00020        192 PGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPI  271 (413)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceE
Confidence            99999999999975     479999999999999876321      111 111111  111         1123456788


Q ss_pred             HHhcCchhHH-----HhHHHh-hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCC--CCcHHHHHHHHHHHH
Q psy11689        279 ADTANKPRIQ-----RTKREY-REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYR--EYSAQNANTANKPRI  350 (390)
Q Consensus       279 i~~t~~~~~~-----r~~~~~-l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs--~~gaDL~~l~~~A~~  350 (390)
                      |+|||+|+.+     |+.++. ...+|+..+|..|+...  .+....+..|+..|+..++|-+  .|||=-..+..++..
T Consensus       272 IaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~--~r~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~  349 (413)
T PLN00020        272 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGI--FRDDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVR  349 (413)
T ss_pred             EEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHH--hccCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHH
Confidence            9999998764     433321 12367788888885332  2223334466677777766632  225544444444444


Q ss_pred             HHHHccccccChhhhhhhHHHHhcC
Q psy11689        351 QRTKREYREQTADTANKPRIQRIGN  375 (390)
Q Consensus       351 ~a~~r~~~~i~~~~~~~~~~~~~~~  375 (390)
                      .-+.    .+..+.+.+.+++..-+
T Consensus       350 ~~i~----~~g~~~~~~~l~~~~~~  370 (413)
T PLN00020        350 KWIA----EVGVENLGKKLVNSKKG  370 (413)
T ss_pred             HHHH----HhhHHHHHHHHhcCCCC
Confidence            4333    34567777766664433

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=8.2e-17  Score=152.66  Aligned_cols=86  Identities=27%  Similarity=0.356  Sum_probs=78.3

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE   77 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~   77 (390)
                      |+..-.+||=||+||||+|.+||||+|              ||||| .|++|. +.++|.+||+|    |+++++||+ +
T Consensus       283 DGFD~~~nvKVI~ATNR~D~LDPALLR--------------PGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~-e  347 (406)
T COG1222         283 DGFDPRGNVKVIMATNRPDILDPALLR--------------PGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL-E  347 (406)
T ss_pred             cCCCCCCCeEEEEecCCccccChhhcC--------------CCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH-H
Confidence            555667899999999999999999999              99999 777777 58899999999    899999999 9


Q ss_pred             HHHHhhcCCccccccccccccchhhhc
Q psy11689         78 NVQREEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        78 ~la~~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      .||+.|.|+|||||.++|+||++.+..
T Consensus       348 ~la~~~~g~sGAdlkaictEAGm~AiR  374 (406)
T COG1222         348 LLARLTEGFSGADLKAICTEAGMFAIR  374 (406)
T ss_pred             HHHHhcCCCchHHHHHHHHHHhHHHHH
Confidence            999999999999999999999998554

>KOG0732|consensus

Probab=99.58  E-value=5.6e-16  Score=164.89  Aligned_cols=232  Identities=17%  Similarity=0.159  Sum_probs=140.5

Q ss_pred             hhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc--ccCCcccc--hHHHHH
Q psy11689          7 RVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF--TKLNEEVE--LSENVQ   80 (390)
Q Consensus         7 ~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~--~~~~~~v~--l~~~la   80 (390)
                      .--=-|+|||||||++.+|+||+|              ||||+ ++..|. +.++|.+||.|  .+|.+.+.  +..+||
T Consensus       402 dsRgqVvvigATnRpda~dpaLRR--------------Pgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la  467 (1080)
T KOG0732|consen  402 DSRGQVVVIGATNRPDAIDPALRR--------------PGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLA  467 (1080)
T ss_pred             CCCCceEEEcccCCccccchhhcC--------------CcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHH
Confidence            333458999999999999999999              99999 555555 38899999998  55666554  468899


Q ss_pred             HhhcCCccccccccccccchhhhcCCCC--CCCCCCCCchhh----Hhhh----cccccCccccccccCCCCCC----Cc
Q psy11689         81 REEEGIAGENLQRGGGEEGIELREGGQR--NGGEGGIGLNER----VQRI----GEGREERRDWEGEEEGAFVP----EL  146 (390)
Q Consensus        81 ~~t~G~~g~~l~~~~~ea~~~~~~~~~~--~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~----~i  146 (390)
                      +.|.||.|+||+++|.+|+..+....-.  -.....+.....    ..+.    +....+............+.    -+
T Consensus       468 ~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~l  547 (1080)
T KOG0732|consen  468 EETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPL  547 (1080)
T ss_pred             HhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecc
Confidence            9999999999999999999874432211  001111110000    0000    01111111110000000000    01


Q ss_pred             cChHHHHHHHHHHHhcc----------ccCHHHhhh-cCC--CCCceEEEEcCCCChHHHHHHHHHHhh-ccchhccccc
Q psy11689        147 GGLKGVRALMEKTVEWP----------FKYAREFER-LAI--PKPKGILLYGPPGCAKTSLVRTLAAHS-VYRVLAASAA  212 (390)
Q Consensus       147 ~g~~~~~~~l~~~~~~~----------~~~~~~~~~-~~~--~~~~~vLl~GppGtGKT~La~aia~~~-~~~~~~i~~~  212 (390)
                      .++......++..+...          ......|.. +.+  --...+++.|..|.|-+.+..||-+.+ ++++..+..+
T Consensus       548 l~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~is  627 (1080)
T KOG0732|consen  548 LPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDIS  627 (1080)
T ss_pred             cchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHH
Confidence            11112221111111110          001111111 111  113448999999999999999998776 6788777766


Q ss_pred             cccCcc-hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        213 QLYSPY-VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       213 ~~~~~~-~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      .+.... .+..+..+..+|..|++..||||||.++|-+...
T Consensus       628 sll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~  668 (1080)
T KOG0732|consen  628 SLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARV  668 (1080)
T ss_pred             HHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhc
Confidence            666555 5667788999999999999999999999876543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.53  E-value=2.5e-15  Score=126.12  Aligned_cols=73  Identities=40%  Similarity=0.738  Sum_probs=69.4

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcC-CeEEEEcCCCCCCChh
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAA-PAILFIDEIERTYNCE  253 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~-p~il~lDEid~~l~~r  253 (390)
                      +||+||||||||++++.+|..++.+++.+++.++...+.+..++.+..+|..+.... |+||+|||+|.+....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~   74 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS   74 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence            699999999999999999999999999999999998889999999999999999998 9999999999998765

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0742|consensus

Probab=99.50  E-value=5.2e-14  Score=135.33  Aligned_cols=114  Identities=22%  Similarity=0.271  Sum_probs=84.7

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY  218 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~  218 (390)
                      .+..+.+|+........+..+... ..+...    ...+-+++|+|||||||||+.|+-+|..+|..+-.+.+.+.. ..
T Consensus       350 gk~pl~~ViL~psLe~Rie~lA~a-TaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-Pl  423 (630)
T KOG0742|consen  350 GKDPLEGVILHPSLEKRIEDLAIA-TANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PL  423 (630)
T ss_pred             CCCCcCCeecCHHHHHHHHHHHHH-hccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-cc
Confidence            344456787777777777776654 121111    124567899999999999999999999999988877776543 23


Q ss_pred             hhhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCCChhhHHHH
Q psy11689        219 VGEAEQNVTQLFHRARLAAPA-ILFIDEIERTYNCEYREQT  258 (390)
Q Consensus       219 ~g~~~~~i~~~f~~A~~~~p~-il~lDEid~~l~~r~~~~~  258 (390)
                      ..+....|+++|..|.++... +|||||.|+++..|....+
T Consensus       424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym  464 (630)
T KOG0742|consen  424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM  464 (630)
T ss_pred             chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh
Confidence            344557899999999988765 8899999999988866544

>CHL00181 cbbX CbbX; Provisional

Probab=99.49  E-value=2.9e-13  Score=129.40  Aligned_cols=104  Identities=23%  Similarity=0.359  Sum_probs=82.4

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCC---CceEEEEcCCCChHHHHHHHHHHhhc-------cchhccccccc
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPK---PKGILLYGPPGCAKTSLVRTLAAHSV-------YRVLAASAAQL  214 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~vLl~GppGtGKT~La~aia~~~~-------~~~~~i~~~~~  214 (390)
                      +++|++++|+++.+++.+ ......++..++.+   +.+++|+||||||||++|+++|..+.       .+++.++..++
T Consensus        24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l  102 (287)
T CHL00181         24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL  102 (287)
T ss_pred             hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence            799999999999999877 44555666666544   44699999999999999999997642       25677888888


Q ss_pred             cCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        215 YSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       215 ~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      .+.+.|.+......+|..|   .++||||||++.+..+
T Consensus       103 ~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~  137 (287)
T CHL00181        103 VGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKP  137 (287)
T ss_pred             HHHHhccchHHHHHHHHHc---cCCEEEEEccchhccC
Confidence            8888888777777777775   4579999999998543

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.45  E-value=3.7e-13  Score=127.15  Aligned_cols=105  Identities=23%  Similarity=0.385  Sum_probs=82.3

Q ss_pred             CCCccChHHHHHHHHHHHhccccCHHHhhhcCCC---CCceEEEEcCCCChHHHHHHHHHHhhc-------cchhccccc
Q psy11689        143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIP---KPKGILLYGPPGCAKTSLVRTLAAHSV-------YRVLAASAA  212 (390)
Q Consensus       143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~vLl~GppGtGKT~La~aia~~~~-------~~~~~i~~~  212 (390)
                      +++++|++.+|+.+++.+.++... ......+..   .+.+++|+||||||||++|+++|..+.       .+++.++++
T Consensus         5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~   83 (261)
T TIGR02881         5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA   83 (261)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence            448999999999999998875433 222223333   346799999999999999999997642       356677888


Q ss_pred             cccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689        213 QLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       213 ~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~  251 (390)
                      ++.+.|.|+....+..+|..|.   ++||||||++.+..
T Consensus        84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~  119 (261)
T TIGR02881        84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR  119 (261)
T ss_pred             HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc
Confidence            8888999998888889998763   57999999999863

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.44  E-value=7.2e-13  Score=126.60  Aligned_cols=103  Identities=25%  Similarity=0.397  Sum_probs=84.9

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCC---CceEEEEcCCCChHHHHHHHHHHhhc-------cchhccccccc
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPK---PKGILLYGPPGCAKTSLVRTLAAHSV-------YRVLAASAAQL  214 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~vLl~GppGtGKT~La~aia~~~~-------~~~~~i~~~~~  214 (390)
                      +++|++++|+++.+++.+ ...++.+...++..   +.+++|+||||||||++|+++|..+.       .+++.++++++
T Consensus        23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l  101 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL  101 (284)
T ss_pred             hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence            589999999999999988 66667777777654   45899999999999999999987653       26778888888


Q ss_pred             cCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689        215 YSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       215 ~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~  251 (390)
                      ...+.|.+...+..+|..|   .+++|||||++.+..
T Consensus       102 ~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~  135 (284)
T TIGR02880       102 VGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYR  135 (284)
T ss_pred             hHhhcccchHHHHHHHHHc---cCcEEEEechhhhcc
Confidence            8888888777778888775   458999999998753

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>KOG0735|consensus

Probab=99.41  E-value=2.5e-13  Score=138.26  Aligned_cols=189  Identities=18%  Similarity=0.167  Sum_probs=120.0

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhc----cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV----YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~----~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                      +.....+||+||+|||||.|+++++.+..    +++..++|+.+.........+.+..+|..|.+++|+||++|++|.++
T Consensus       428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~  507 (952)
T KOG0735|consen  428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA  507 (952)
T ss_pred             ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence            44567899999999999999999998875    45567899988877777777788999999999999999999999999


Q ss_pred             ChhhHHHH---------HHHh--------hcCCC-cEEEeccCHHHHHhcCchhHHHhHH-HhhhhcC--CchhHHHhhc
Q psy11689        251 NCEYREQT---------ADNA--------KKPRI-PRTNGGYREQTADTANKPRIQRTKR-EYREQTA--DTAHKTRISR  309 (390)
Q Consensus       251 ~~r~~~~~---------~~~~--------~~~~~-~~i~~~~~~~~i~~t~~~~~~r~~~-~~l~~l~--~~~~r~~I~~  309 (390)
                      +....+..         ...+        ..... ..+..+....++.    |.+..+.+ .....++  ...+|..|++
T Consensus       508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~----~~L~s~~~Fq~~~~L~ap~~~~R~~IL~  583 (952)
T KOG0735|consen  508 SASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN----PLLVSPLLFQIVIALPAPAVTRRKEILT  583 (952)
T ss_pred             ccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC----hhhcCccceEEEEecCCcchhHHHHHHH
Confidence            73221111         0000        11111 1111111111111    11111111 1111122  3566777765


Q ss_pred             ccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc----cccccChhhhhhhH
Q psy11689        310 TNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR----EYREQTADTANKPR  369 (390)
Q Consensus       310 ~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r----~~~~i~~~~~~~~~  369 (390)
                      +...........-|++-++..|+||.  .-||.-++.+|...|...    ....+|.++|.++.
T Consensus       584 ~~~s~~~~~~~~~dLd~ls~~TEGy~--~~DL~ifVeRai~~a~leris~~~klltke~f~ksL  645 (952)
T KOG0735|consen  584 TIFSKNLSDITMDDLDFLSVKTEGYL--ATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSL  645 (952)
T ss_pred             HHHHhhhhhhhhHHHHHHHHhcCCcc--chhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence            54444332222234444999999999  999999999999998722    22256777776654

>KOG0736|consensus

Probab=99.35  E-value=8.6e-13  Score=135.47  Aligned_cols=192  Identities=17%  Similarity=0.175  Sum_probs=132.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR  255 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~  255 (390)
                      .....+||+|+||||||++++++|.++|.+++.++|.++........+.++...|.+|+.++|+|||+-+.|.+.-....
T Consensus       429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg  508 (953)
T KOG0736|consen  429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG  508 (953)
T ss_pred             ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence            34567999999999999999999999999999999999999988899999999999999999999999999988743332


Q ss_pred             HH---HHHHhhcCCCcE-E-EeccCHHHHHhcCc-----hhHHHhHH-HhhhhcCCchhHHHhhcccccccCCCCCCCCc
Q psy11689        256 EQ---TADNAKKPRIPR-T-NGGYREQTADTANK-----PRIQRTKR-EYREQTADTAHKTRISRTNRGYREKTADTANK  324 (390)
Q Consensus       256 ~~---~~~~~~~~~~~~-i-~~~~~~~~i~~t~~-----~~~~r~~~-~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl  324 (390)
                      ..   .+..+....... . ...+++.++++++.     +.++..++ +.....++..+|..|+-. ...+.....++.+
T Consensus       509 ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~-y~~~~~~n~~v~~  587 (953)
T KOG0736|consen  509 GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQW-YLNHLPLNQDVNL  587 (953)
T ss_pred             chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHH-HHhccccchHHHH
Confidence            21   112211110000 0 01223333444443     33343333 233335566777776421 1111223556888


Q ss_pred             chhhhcCCCCCCCcHHHHHHHHHHHHHHHHc---cc-----------------cccChhhhhhhHH
Q psy11689        325 PRIPRTNRGYREYSAQNANTANKPRIQRTKR---EY-----------------REQTADTANKPRI  370 (390)
Q Consensus       325 ~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r---~~-----------------~~i~~~~~~~~~~  370 (390)
                      ..+|++|.||+  -+|++.++..+...+..+   ..                 ..++++||-++..
T Consensus       588 k~~a~~t~gfs--~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals  651 (953)
T KOG0736|consen  588 KQLARKTSGFS--FGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALS  651 (953)
T ss_pred             HHHHHhcCCCC--HHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHH
Confidence            89999999999  999999998885444433   11                 4689999999885

>KOG0743|consensus

Probab=99.34  E-value=1.3e-12  Score=127.97  Aligned_cols=107  Identities=19%  Similarity=0.323  Sum_probs=89.3

Q ss_pred             CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcch
Q psy11689        140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV  219 (390)
Q Consensus       140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~  219 (390)
                      ..+|+.++--.+.|+.+.+-+..+.+..+.|++.|.++.+|.|||||||||||+++.|+|+.+++.++.+...+....  
T Consensus       197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--  274 (457)
T KOG0743|consen  197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--  274 (457)
T ss_pred             CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence            467778888899999999999999999999999999999999999999999999999999999999988877654322  


Q ss_pred             hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689        220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY  254 (390)
Q Consensus       220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~  254 (390)
                        .+  ++.++..  ..+-+||+|.+||..++.+.
T Consensus       275 --~d--Lr~LL~~--t~~kSIivIEDIDcs~~l~~  303 (457)
T KOG0743|consen  275 --SD--LRHLLLA--TPNKSILLIEDIDCSFDLRE  303 (457)
T ss_pred             --HH--HHHHHHh--CCCCcEEEEeeccccccccc
Confidence              11  5555544  34558999999999987543

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.25  E-value=3.4e-11  Score=117.55  Aligned_cols=217  Identities=19%  Similarity=0.170  Sum_probs=122.7

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccc
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA  212 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~  212 (390)
                      .|+.......++++.|.+..++.+...+.....        .-.++.+++|+||||||||++++++|++.+..+....++
T Consensus        14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~   85 (328)
T PRK00080         14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGP   85 (328)
T ss_pred             hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecc
Confidence            344444555666999999999999888754211        113567899999999999999999999998776655443


Q ss_pred             cccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEe-----------ccCHHHHHh
Q psy11689        213 QLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNG-----------GYREQTADT  281 (390)
Q Consensus       213 ~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~-----------~~~~~~i~~  281 (390)
                      .+.      ....+..++..  ...++||||||++.+-.... +.....+.......+..           -.+...+++
T Consensus        86 ~~~------~~~~l~~~l~~--l~~~~vl~IDEi~~l~~~~~-e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~a  156 (328)
T PRK00080         86 ALE------KPGDLAAILTN--LEEGDVLFIDEIHRLSPVVE-EILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGA  156 (328)
T ss_pred             ccc------ChHHHHHHHHh--cccCCEEEEecHhhcchHHH-HHHHHHHHhcceeeeeccCccccceeecCCCceEEee
Confidence            221      11223334433  24678999999999864322 11112221111111110           011223444


Q ss_pred             cCchhHH-HhHHHh---hhh--cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy11689        282 ANKPRIQ-RTKREY---REQ--TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR  355 (390)
Q Consensus       282 t~~~~~~-r~~~~~---l~~--l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r  355 (390)
                      ++++... .+++..   ...  ..+..+...|+...........++--+..|++++.|+   ...+..++.++...|..+
T Consensus       157 t~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~---pR~a~~~l~~~~~~a~~~  233 (328)
T PRK00080        157 TTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT---PRIANRLLRRVRDFAQVK  233 (328)
T ss_pred             cCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC---chHHHHHHHHHHHHHHHc
Confidence            4443321 111111   111  2233444444322111112222333356788888876   577788888887777776


Q ss_pred             cccccChhhhhhhH
Q psy11689        356 EYREQTADTANKPR  369 (390)
Q Consensus       356 ~~~~i~~~~~~~~~  369 (390)
                      +...++.+++..+.
T Consensus       234 ~~~~I~~~~v~~~l  247 (328)
T PRK00080        234 GDGVITKEIADKAL  247 (328)
T ss_pred             CCCCCCHHHHHHHH
Confidence            66788888888776

>KOG0728|consensus

Probab=99.25  E-value=1.3e-12  Score=118.68  Aligned_cols=86  Identities=19%  Similarity=0.285  Sum_probs=79.7

Q ss_pred             cchhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchH
Q psy11689          3 VDLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELS   76 (390)
Q Consensus         3 ~~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~   76 (390)
                      .|+.+.+|||=||++|||-|..|+||+|              |||.| .|+.|+ +++.|.+||+|    |++-..+++ 
T Consensus       278 ldgfeatknikvimatnridild~allr--------------pgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l-  342 (404)
T KOG0728|consen  278 LDGFEATKNIKVIMATNRIDILDPALLR--------------PGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL-  342 (404)
T ss_pred             ccccccccceEEEEeccccccccHhhcC--------------CCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH-
Confidence            5888999999999999999999999988              99999 999999 67789999998    778899999 


Q ss_pred             HHHHHhhcCCccccccccccccchhhh
Q psy11689         77 ENVQREEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        77 ~~la~~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      +.+|..-.|.+|+++.+.|.||++++.
T Consensus       343 ~kiaekm~gasgaevk~vcteagm~al  369 (404)
T KOG0728|consen  343 RKIAEKMPGASGAEVKGVCTEAGMYAL  369 (404)
T ss_pred             HHHHHhCCCCccchhhhhhhhhhHHHH
Confidence            999999999999999999999999844

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.24  E-value=2.6e-11  Score=110.02  Aligned_cols=108  Identities=22%  Similarity=0.273  Sum_probs=64.5

Q ss_pred             CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcch
Q psy11689        140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV  219 (390)
Q Consensus       140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~  219 (390)
                      ...++++.|.+.+++.+.-++......        -....+++||||||+||||||+.||++.+.++...+++.+-.   
T Consensus        20 P~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k---   88 (233)
T PF05496_consen   20 PKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK---   88 (233)
T ss_dssp             -SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred             CCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence            444559999999999987776542111        134568999999999999999999999999988777654311   


Q ss_pred             hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                         ...+..++...  ....||||||++++- +...+-....+..
T Consensus        89 ---~~dl~~il~~l--~~~~ILFIDEIHRln-k~~qe~LlpamEd  127 (233)
T PF05496_consen   89 ---AGDLAAILTNL--KEGDILFIDEIHRLN-KAQQEILLPAMED  127 (233)
T ss_dssp             ---CHHHHHHHHT----TT-EEEECTCCC---HHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHhc--CCCcEEEEechhhcc-HHHHHHHHHHhcc
Confidence               12233333332  356799999999963 3333334444444

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.24  E-value=4.3e-11  Score=128.51  Aligned_cols=102  Identities=24%  Similarity=0.309  Sum_probs=82.3

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLA  208 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~  208 (390)
                      ....++++.|-+.....+.+.+..             ....+++|+||||||||++++++|...          +..++.
T Consensus       177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~  243 (731)
T TIGR02639       177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS  243 (731)
T ss_pred             hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence            344566888888777766655532             345679999999999999999999876          566777


Q ss_pred             ccccccc--CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        209 ASAAQLY--SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       209 i~~~~~~--~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      ++...+.  ..|.|+.++.++.+|..+....|+||||||++.+++.+
T Consensus       244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g  290 (731)
T TIGR02639       244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAG  290 (731)
T ss_pred             ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccC
Confidence            7777776  46789999999999999988889999999999998653

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=3.6e-11  Score=123.82  Aligned_cols=202  Identities=26%  Similarity=0.353  Sum_probs=144.4

Q ss_pred             ccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEE
Q psy11689        162 WPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAIL  241 (390)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il  241 (390)
                      ++..+++.++.+++.++.+++++||||+|||++++++|.. +..+..++.++....+.+..+...+.+|..+....|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii   80 (494)
T COG0464           2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII   80 (494)
T ss_pred             CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence            3567888899999999999999999999999999999999 655578889999999999999999999999999999999


Q ss_pred             EEcCCCCCCChhhHH------HHHHHhhcC--CCcEEEeccCHHHHHhcCchhHHHhHHHhh--------hhcCCchhHH
Q psy11689        242 FIDEIERTYNCEYRE------QTADNAKKP--RIPRTNGGYREQTADTANKPRIQRTKREYR--------EQTADTAHKT  305 (390)
Q Consensus       242 ~lDEid~~l~~r~~~------~~~~~~~~~--~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l--------~~l~~~~~r~  305 (390)
                      ++||++.+.+.+...      .....+...  ...   ... +.+++.++++..........        ..++....+.
T Consensus        81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~---~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  156 (494)
T COG0464          81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK---RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL  156 (494)
T ss_pred             eechhhhcccCccccccchhhHHHHHHHHhccccc---CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence            999999999877650      111111110  111   111 22233455544433222111        1233334444


Q ss_pred             HhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc------ccccChhhhhhhHHHH
Q psy11689        306 RISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKRE------YREQTADTANKPRIQR  372 (390)
Q Consensus       306 ~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~------~~~i~~~~~~~~~~~~  372 (390)
                      .|.  ....+... ..+.++..++..+.||+  ++|+..++..+...+.++.      ...++.+++..++-+.
T Consensus       157 ei~--~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~  226 (494)
T COG0464         157 EIL--QIHTRLMFLGPPGTGKTLAARTVGKS--GADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKV  226 (494)
T ss_pred             HHH--HHHHhcCCCcccccHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhc
Confidence            442  12222222 33688999999999999  9999999999999999885      3367888888777554

>PRK04195 replication factor C large subunit; Provisional

Probab=99.19  E-value=1.1e-10  Score=119.63  Aligned_cols=105  Identities=23%  Similarity=0.375  Sum_probs=79.1

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA  211 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~  211 (390)
                      ..|.++|....++++.|.+..++.+..++.....        + .++..+||+||||+|||++++++|++.+++++.+++
T Consensus         2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna   72 (482)
T PRK04195          2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA   72 (482)
T ss_pred             CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence            3688888888999999999999999998864221        1 237789999999999999999999999998888877


Q ss_pred             ccccCcchhhHHHHHHHHHHHHHh------cCCeEEEEcCCCCCCC
Q psy11689        212 AQLYSPYVGEAEQNVTQLFHRARL------AAPAILFIDEIERTYN  251 (390)
Q Consensus       212 ~~~~~~~~g~~~~~i~~~f~~A~~------~~p~il~lDEid~~l~  251 (390)
                      ++...      ...+..+...+..      ..+.||+|||+|.+..
T Consensus        73 sd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~  112 (482)
T PRK04195         73 SDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG  112 (482)
T ss_pred             ccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence            65321      1123333322221      2578999999999875

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.17  E-value=1.2e-10  Score=112.43  Aligned_cols=209  Identities=19%  Similarity=0.190  Sum_probs=114.3

Q ss_pred             CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhH
Q psy11689        143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA  222 (390)
Q Consensus       143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~  222 (390)
                      ++++.|.++.++.+...+......        -..+.+++|+||||||||+|++++|++.+.++..+..+....      
T Consensus         3 ~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------   68 (305)
T TIGR00635         3 LAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------   68 (305)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence            348999999999998877532111        134567999999999999999999999887655444322111      


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEec-----------cCHHHHHhcCchhH-HHh
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGG-----------YREQTADTANKPRI-QRT  290 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~-----------~~~~~i~~t~~~~~-~r~  290 (390)
                      ...+...+..  ...+.++||||++.+-+.. .+.....+.......+...           .....+.+++++.. ...
T Consensus        69 ~~~l~~~l~~--~~~~~vl~iDEi~~l~~~~-~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~  145 (305)
T TIGR00635        69 PGDLAAILTN--LEEGDVLFIDEIHRLSPAV-EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSP  145 (305)
T ss_pred             chhHHHHHHh--cccCCEEEEehHhhhCHHH-HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHH
Confidence            1112222222  2457899999999876542 2222222211111111100           11222344444321 111


Q ss_pred             HHH---hhhh--cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhh
Q psy11689        291 KRE---YREQ--TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTA  365 (390)
Q Consensus       291 ~~~---~l~~--l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~  365 (390)
                      ++.   ....  ..+..+...++...........++-.+..+++.+.|+   ...+..++..+...|...+...++.+.+
T Consensus       146 l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~---pR~~~~ll~~~~~~a~~~~~~~it~~~v  222 (305)
T TIGR00635       146 LRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT---PRIANRLLRRVRDFAQVRGQKIINRDIA  222 (305)
T ss_pred             HHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC---cchHHHHHHHHHHHHHHcCCCCcCHHHH
Confidence            111   1111  1233444444321111112222333456788888886   5667788888777776666677888888


Q ss_pred             hhhHHH
Q psy11689        366 NKPRIQ  371 (390)
Q Consensus       366 ~~~~~~  371 (390)
                      .++.-.
T Consensus       223 ~~~l~~  228 (305)
T TIGR00635       223 LKALEM  228 (305)
T ss_pred             HHHHHH
Confidence            877754

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>KOG0744|consensus

Probab=99.17  E-value=7.3e-12  Score=117.59  Aligned_cols=110  Identities=22%  Similarity=0.301  Sum_probs=79.9

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhh-hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc---------chhccccccc
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFE-RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY---------RVLAASAAQL  214 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~---------~~~~i~~~~~  214 (390)
                      .+.--.+.|+++.......+...+.-. .--+...+-+||+||||||||+|++++|..+.+         ..+.+++..+
T Consensus       143 sLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsL  222 (423)
T KOG0744|consen  143 SLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSL  222 (423)
T ss_pred             HHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHH
Confidence            444445567777666554333332221 222455678999999999999999999987653         3457888999


Q ss_pred             cCcchhhHHHHHHHHHHHHHhc-----CCeEEEEcCCCCCCChhh
Q psy11689        215 YSPYVGEAEQNVTQLFHRARLA-----APAILFIDEIERTYNCEY  254 (390)
Q Consensus       215 ~~~~~g~~~~~i~~~f~~A~~~-----~p~il~lDEid~~l~~r~  254 (390)
                      +++|.+++.+.+.++|+.....     .-..++|||++++...|.
T Consensus       223 FSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~  267 (423)
T KOG0744|consen  223 FSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAART  267 (423)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHH
Confidence            9999999999999999976443     223778999999987774

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.17  E-value=2.7e-11  Score=129.21  Aligned_cols=100  Identities=19%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC--------
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS--------  216 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~--------  216 (390)
                      .|.|.+.+++.+.+.+......   +.. .-+|...+||+||||||||++|+++|..++.+++.++++++..        
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~~g---l~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li  534 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSRAG---LGH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI  534 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHhcc---ccC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence            4788888888888887642110   000 1123457999999999999999999999999998888776542        


Q ss_pred             ----cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        217 ----PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       217 ----~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                          +|.|....  ..+....+..+.+||||||+|.+-
T Consensus       535 G~~~gyvg~~~~--g~L~~~v~~~p~sVlllDEieka~  570 (758)
T PRK11034        535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH  570 (758)
T ss_pred             CCCCCccccccc--chHHHHHHhCCCcEEEeccHhhhh
Confidence                12221111  122233345566899999999973

>KOG0734|consensus

Probab=99.12  E-value=9.1e-12  Score=123.49  Aligned_cols=85  Identities=18%  Similarity=0.263  Sum_probs=73.4

Q ss_pred             hhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHH
Q psy11689          5 LVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSEN   78 (390)
Q Consensus         5 ~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~   78 (390)
                      +..-.--|+|||+||+++..|+||.|              ||||| +|.+|. |-.||.+||++    ...+++||+ ..
T Consensus       433 GF~qNeGiIvigATNfpe~LD~AL~R--------------PGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~-~i  497 (752)
T KOG0734|consen  433 GFKQNEGIIVIGATNFPEALDKALTR--------------PGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDP-KI  497 (752)
T ss_pred             CcCcCCceEEEeccCChhhhhHHhcC--------------CCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCH-hH
Confidence            33334468999999999999999999              99999 777777 47899999987    447789999 99


Q ss_pred             HHHhhcCCccccccccccccchhhhc
Q psy11689         79 VQREEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        79 la~~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      ||+=|.||+|+||+.++..|+.++..
T Consensus       498 iARGT~GFsGAdLaNlVNqAAlkAa~  523 (752)
T KOG0734|consen  498 IARGTPGFSGADLANLVNQAALKAAV  523 (752)
T ss_pred             hccCCCCCchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988654

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.11  E-value=3.2e-10  Score=109.78  Aligned_cols=67  Identities=33%  Similarity=0.526  Sum_probs=56.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcC----CeEEEEcCCCCCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAA----PAILFIDEIERTY  250 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~----p~il~lDEid~~l  250 (390)
                      .-.+.+|+|||||||||||+.||...+.+|..++..       ..+.+.++.+|+.|+...    ..|||+||++++-
T Consensus        47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-------~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn  117 (436)
T COG2256          47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-------TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN  117 (436)
T ss_pred             CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-------cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC
Confidence            556799999999999999999999999999888763       235577899999995543    4799999999864

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.10  E-value=3e-10  Score=120.31  Aligned_cols=114  Identities=22%  Similarity=0.232  Sum_probs=88.4

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHh--------------------------------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH--------------------------------------------------  201 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~--------------------------------------------------  201 (390)
                      ++.+++++.+.+.|++|||||||+|.+.+-                                                  
T Consensus       493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p  572 (709)
T COG2274         493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP  572 (709)
T ss_pred             eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC
Confidence            567889999999999999999999999911                                                  


Q ss_pred             -------------hccchhccccccccCcchh------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        202 -------------SVYRVLAASAAQLYSPYVG------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       202 -------------~~~~~~~i~~~~~~~~~~g------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                                   ++++-+....|......++      .+.|+.+-++++|..++|.|+++||+.+.+|..++..+.+++
T Consensus       573 ~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L  652 (709)
T COG2274         573 EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL  652 (709)
T ss_pred             CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH
Confidence                         1111111111212222222      245777789999999999999999999999999999999999


Q ss_pred             hcCC--CcEEEeccCHHHHHhcCch
Q psy11689        263 KKPR--IPRTNGGYREQTADTANKP  285 (390)
Q Consensus       263 ~~~~--~~~i~~~~~~~~i~~t~~~  285 (390)
                      ....  .|.+.++||+.++..+++-
T Consensus       653 ~~~~~~~T~I~IaHRl~ti~~adrI  677 (709)
T COG2274         653 LQILQGRTVIIIAHRLSTIRSADRI  677 (709)
T ss_pred             HHHhcCCeEEEEEccchHhhhccEE
Confidence            8765  9999999999999888873

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.10  E-value=4.5e-10  Score=100.62  Aligned_cols=58  Identities=16%  Similarity=0.078  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHH---hhcCCCcEEEeccCHHHH
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADN---AKKPRIPRTNGGYREQTA  279 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~---~~~~~~~~i~~~~~~~~i  279 (390)
                      +.|+.+.+.++|...+|.++++||+++.+|+.--.+..+.   +...+.|.+.++|.+...
T Consensus       139 GGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA  199 (240)
T COG1126         139 GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA  199 (240)
T ss_pred             cHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH
Confidence            3466677999999999999999999999999987766554   455689999999976443

>KOG0652|consensus

Probab=99.09  E-value=4.3e-11  Score=109.47  Aligned_cols=81  Identities=21%  Similarity=0.299  Sum_probs=72.7

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      ..-|=||++|||-|..||||+|              .||++ .|+.|. .+++|.+|++|    |..++||++ ++||+.
T Consensus       308 ~~~vKviAATNRvDiLDPALlR--------------SGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNf-eELaRs  372 (424)
T KOG0652|consen  308 DDRVKVIAATNRVDILDPALLR--------------SGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNF-EELARS  372 (424)
T ss_pred             ccceEEEeecccccccCHHHhh--------------cccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCH-HHHhhc
Confidence            3457899999999999999999              99999 788777 57889999998    789999999 999999


Q ss_pred             hcCCccccccccccccchhhhc
Q psy11689         83 EEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      |.+|.|++..++|.|+++-+..
T Consensus       373 TddFNGAQcKAVcVEAGMiALR  394 (424)
T KOG0652|consen  373 TDDFNGAQCKAVCVEAGMIALR  394 (424)
T ss_pred             ccccCchhheeeehhhhHHHHh
Confidence            9999999999999999997543

>KOG0729|consensus

Probab=99.09  E-value=3.2e-11  Score=110.60  Aligned_cols=85  Identities=20%  Similarity=0.255  Sum_probs=76.0

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc----ccCCcccchH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF----TKLNEEVELS   76 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~----~~~~~~v~l~   76 (390)
                      |+..---||=|+++|||++++|+||+|              |||++   ++.||+ .++|-+|++|    |....|+-+ 
T Consensus       309 dgfdprgnikvlmatnrpdtldpallr--------------pgrldrkvef~lpd-legrt~i~kihaksmsverdir~-  372 (435)
T KOG0729|consen  309 DGFDPRGNIKVLMATNRPDTLDPALLR--------------PGRLDRKVEFGLPD-LEGRTHIFKIHAKSMSVERDIRF-  372 (435)
T ss_pred             cCCCCCCCeEEEeecCCCCCcCHhhcC--------------CcccccceeccCCc-ccccceeEEEeccccccccchhH-
Confidence            444455699999999999999999999              99999   888999 9999999999    777788888 


Q ss_pred             HHHHHhhcCCccccccccccccchhhhc
Q psy11689         77 ENVQREEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        77 ~~la~~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      +-||+++.+-+|++|+++|.|+++++..
T Consensus       373 ellarlcpnstgaeirsvcteagmfair  400 (435)
T KOG0729|consen  373 ELLARLCPNSTGAEIRSVCTEAGMFAIR  400 (435)
T ss_pred             HHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence            8899999999999999999999998554

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.06  E-value=1.3e-09  Score=101.25  Aligned_cols=208  Identities=19%  Similarity=0.190  Sum_probs=116.3

Q ss_pred             CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhh
Q psy11689        142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE  221 (390)
Q Consensus       142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~  221 (390)
                      .+++..|.+.+|+.+.-++......        -....++||+||||.||||||..+|++.|.++...+++.+-..    
T Consensus        24 ~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~----   91 (332)
T COG2255          24 TLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP----   91 (332)
T ss_pred             cHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh----
Confidence            3448999999999999888763222        2456789999999999999999999999998887777655321    


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcE----------EEeccCHHH-HHh-cCchhHHH
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPR----------TNGGYREQT-ADT-ANKPRIQR  289 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~----------i~~~~~~~~-i~~-t~~~~~~r  289 (390)
                        ..+..++..  ...-+|+|+|||+++...- ++-....+..-.+-.          +...-.+++ |++ |.-.-+-.
T Consensus        92 --gDlaaiLt~--Le~~DVLFIDEIHrl~~~v-EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~  166 (332)
T COG2255          92 --GDLAAILTN--LEEGDVLFIDEIHRLSPAV-EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTN  166 (332)
T ss_pred             --hhHHHHHhc--CCcCCeEEEehhhhcChhH-HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccc
Confidence              223333333  3455799999999976542 222222222211111          111112222 333 33333333


Q ss_pred             hHHHhhhh---cC--CchhHHHhh-cccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChh
Q psy11689        290 TKREYREQ---TA--DTAHKTRIS-RTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTAD  363 (390)
Q Consensus       290 ~~~~~l~~---l~--~~~~r~~I~-~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~  363 (390)
                      +++.....   +.  +..+-..|+ .+.... ....++-...+||++..|-   +.=--.|+++-+-+|.-++...|+.+
T Consensus       167 PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-~i~i~~~~a~eIA~rSRGT---PRIAnRLLrRVRDfa~V~~~~~I~~~  242 (332)
T COG2255         167 PLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-GIEIDEEAALEIARRSRGT---PRIANRLLRRVRDFAQVKGDGDIDRD  242 (332)
T ss_pred             hhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-CCCCChHHHHHHHHhccCC---cHHHHHHHHHHHHHHHHhcCCcccHH
Confidence            33322222   11  122222222 111111 1112223345677777764   33335577788888877777777776


Q ss_pred             hhhhhHH
Q psy11689        364 TANKPRI  370 (390)
Q Consensus       364 ~~~~~~~  370 (390)
                      -..++..
T Consensus       243 ia~~aL~  249 (332)
T COG2255         243 IADKALK  249 (332)
T ss_pred             HHHHHHH
Confidence            6666653

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.06  E-value=7.9e-10  Score=101.44  Aligned_cols=105  Identities=22%  Similarity=0.276  Sum_probs=75.5

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----------------------------cchh---------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----------------------------YRVL---------------  207 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----------------------------~~~~---------------  207 (390)
                      ++.+.+++.+.|.||+|||||||.+.+|.-..                             +|..               
T Consensus        23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~  102 (248)
T COG1116          23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK  102 (248)
T ss_pred             eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence            56788999999999999999999999991100                             0100               


Q ss_pred             --------------ccccccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCC
Q psy11689        208 --------------AASAAQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRI  267 (390)
Q Consensus       208 --------------~i~~~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~  267 (390)
                                    .+........|..+  +.++.+..+++|....|.|+++||+.+.+|.-+.....+.+    ...+.
T Consensus       103 ~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~  182 (248)
T COG1116         103 SKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRK  182 (248)
T ss_pred             chHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCC
Confidence                          11111222333322  34566679999999999999999999999998877665544    44578


Q ss_pred             cEEEeccCH
Q psy11689        268 PRTNGGYRE  276 (390)
Q Consensus       268 ~~i~~~~~~  276 (390)
                      |.+.++|.+
T Consensus       183 TvllVTHdi  191 (248)
T COG1116         183 TVLLVTHDV  191 (248)
T ss_pred             EEEEEeCCH
Confidence            899999975

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.05  E-value=4.1e-11  Score=133.73  Aligned_cols=82  Identities=12%  Similarity=0.039  Sum_probs=68.1

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc------ccCCcc-cchHHHH
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF------TKLNEE-VELSENV   79 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~------~~~~~~-v~l~~~l   79 (390)
                      ..+|+||||||||+.+|+||+|              ||||| .|.||. +..+|++++.+      ..+..+ +++ +.+
T Consensus      1770 ~~~VIVIAATNRPD~LDPALLR--------------PGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl-~~L 1834 (2281)
T CHL00206       1770 TRNILVIASTHIPQKVDPALIA--------------PNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHT-NGF 1834 (2281)
T ss_pred             CCCEEEEEeCCCcccCCHhHcC--------------CCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccH-HHH
Confidence            4589999999999999999999              99999 777766 35688888764      234433 678 889


Q ss_pred             HHhhcCCccccccccccccchhhhcC
Q psy11689         80 QREEEGIAGENLQRGGGEEGIELREG  105 (390)
Q Consensus        80 a~~t~G~~g~~l~~~~~ea~~~~~~~  105 (390)
                      |+.|.||+||||+++|.||+..+...
T Consensus      1835 A~~T~GfSGADLanLvNEAaliAirq 1860 (2281)
T CHL00206       1835 GSITMGSNARDLVALTNEALSISITQ 1860 (2281)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999875544

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=8e-11  Score=120.74  Aligned_cols=80  Identities=26%  Similarity=0.407  Sum_probs=71.3

Q ss_pred             eeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689         11 TVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF----TKLNEEVELSENVQREE   83 (390)
Q Consensus        11 ~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~t   83 (390)
                      .|+++++|||+|..|+||+|              ||||+   .|+.|| -.+|++|+++    .+++++||+ ..+|+.|
T Consensus       288 gviviaaTNRpdVlD~ALlR--------------pgRFDRqI~V~~PD-i~gRe~IlkvH~~~~~l~~~Vdl-~~iAr~t  351 (596)
T COG0465         288 GVIVIAATNRPDVLDPALLR--------------PGRFDRQILVELPD-IKGREQILKVHAKNKPLAEDVDL-KKIARGT  351 (596)
T ss_pred             ceEEEecCCCcccchHhhcC--------------CCCcceeeecCCcc-hhhHHHHHHHHhhcCCCCCcCCH-HHHhhhC
Confidence            58999999999999999999              99999   566666 7999999997    668899999 8899999


Q ss_pred             cCCccccccccccccchhhhcCC
Q psy11689         84 EGIAGENLQRGGGEEGIELREGG  106 (390)
Q Consensus        84 ~G~~g~~l~~~~~ea~~~~~~~~  106 (390)
                      .||+|++|..++.|++......+
T Consensus       352 pGfsGAdL~nl~NEAal~aar~n  374 (596)
T COG0465         352 PGFSGADLANLLNEAALLAARRN  374 (596)
T ss_pred             CCcccchHhhhHHHHHHHHHHhc
Confidence            99999999999999998755544

>KOG0058|consensus

Probab=99.04  E-value=7e-10  Score=114.52  Aligned_cols=113  Identities=20%  Similarity=0.245  Sum_probs=87.8

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHH----------------------------------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLA----------------------------------------------------  199 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia----------------------------------------------------  199 (390)
                      ++.++||+.+.|+||+|+||||++..+-                                                    
T Consensus       488 sfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~  567 (716)
T KOG0058|consen  488 SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD  567 (716)
T ss_pred             eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC
Confidence            5678999999999999999999999997                                                    


Q ss_pred             -----------HhhccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        200 -----------AHSVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       200 -----------~~~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                                 +.++++-+....++.++..+|+      +.|+.+-+.++|...+|+|+++||+++.+|..++..+.+.+
T Consensus       568 ~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL  647 (716)
T KOG0058|consen  568 NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEAL  647 (716)
T ss_pred             CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH
Confidence                       1122222222233333333443      34777889999999999999999999999999988887777


Q ss_pred             hc--CCCcEEEeccCHHHHHhcCc
Q psy11689        263 KK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       263 ~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+  ...|.+.++||+.+|..+++
T Consensus       648 ~~~~~~rTVlvIAHRLSTV~~Ad~  671 (716)
T KOG0058|consen  648 DRLMQGRTVLVIAHRLSTVRHADQ  671 (716)
T ss_pred             HHhhcCCeEEEEehhhhHhhhccE
Confidence            53  36889999999999988875

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.04  E-value=4e-10  Score=121.08  Aligned_cols=222  Identities=15%  Similarity=0.124  Sum_probs=119.2

Q ss_pred             heeeeeccccCCC-----cchhhHHHHhhcccccCCcccCCCccceeeCCC-CCccCcccccc-----ccCC----cccc
Q psy11689         10 NTVLMYFAKHRGC-----TADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPT-APQGRETELPF-----TKLN----EEVE   74 (390)
Q Consensus        10 n~~~~~~~~n~~~-----~~d~al~r~~~~~~~l~~~l~~~gr~~~i~ip~-~~~~r~~~l~~-----~~~~----~~v~   74 (390)
                      .++.+||+||..+     ..|+||.|                ||..|+++. +.+++.+||+.     ...+    .+-.
T Consensus       310 g~i~~IgaTt~~e~~~~~~~d~al~r----------------Rf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~a  373 (731)
T TIGR02639       310 GKLRCIGSTTYEEYKNHFEKDRALSR----------------RFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEA  373 (731)
T ss_pred             CCeEEEEecCHHHHHHHhhhhHHHHH----------------hCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHH
Confidence            3588999999633     46777777                889777777 46677788774     1111    1223


Q ss_pred             hHHHHHHhhcCCccccccc-----cccccchhhhcCCCCCCCCCCCCchhhHhhhcccccC-----cccccccc-----C
Q psy11689         75 LSENVQREEEGIAGENLQR-----GGGEEGIELREGGQRNGGEGGIGLNERVQRIGEGREE-----RRDWEGEE-----E  139 (390)
Q Consensus        75 l~~~la~~t~G~~g~~l~~-----~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----~  139 (390)
                      + +.+++.+..|.+....+     +..+++........ ..  ....+.............     ...+++..     .
T Consensus       374 l-~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~-~~--~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~  449 (731)
T TIGR02639       374 L-EAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPK-AK--KKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLE  449 (731)
T ss_pred             H-HHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcc-cc--cccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHH
Confidence            3 77888888886554322     12333332211100 00  011111111111111111     11111000     0


Q ss_pred             CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCC----CCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc
Q psy11689        140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAI----PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY  215 (390)
Q Consensus       140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~  215 (390)
                      ...-..|.|.+..++.+...+...        ..++    .+...+||+||+|||||+||+++|..++.+++.++++++.
T Consensus       450 ~~l~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~  521 (731)
T TIGR02639       450 KNLKAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM  521 (731)
T ss_pred             HHHhcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence            000114666666666666665431        1222    2334589999999999999999999999888888876654


Q ss_pred             Cc------------chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        216 SP------------YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       216 ~~------------~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                      ..            |.|..+  ...+....+..+.+||+|||+|.+- +...+...+.+
T Consensus       522 ~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~-~~~~~~Ll~~l  577 (731)
T TIGR02639       522 EKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAH-PDIYNILLQVM  577 (731)
T ss_pred             hcccHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcC-HHHHHHHHHhh
Confidence            31            222221  1223444456677899999999763 33333333333

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.02  E-value=3.2e-09  Score=113.46  Aligned_cols=101  Identities=22%  Similarity=0.256  Sum_probs=75.2

Q ss_pred             CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhcc
Q psy11689        140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAA  209 (390)
Q Consensus       140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~i  209 (390)
                      ...++.+.|-+.....+.+++..             ....++||+||||||||++++++|...          +..++.+
T Consensus       182 ~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l  248 (758)
T PRK11034        182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL  248 (758)
T ss_pred             cCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence            44455677777776666665533             245678999999999999999999764          2333444


Q ss_pred             cccccc--CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        210 SAAQLY--SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       210 ~~~~~~--~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      +...+.  ..|.|+.++.++.+|..+....++||||||++.+++.+
T Consensus       249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g  294 (758)
T PRK11034        249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAG  294 (758)
T ss_pred             cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccC
Confidence            444444  34678888999999999988889999999999998654

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.01  E-value=8.7e-10  Score=110.23  Aligned_cols=108  Identities=29%  Similarity=0.349  Sum_probs=77.5

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhh---cCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc-Ccchh
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFER---LAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY-SPYVG  220 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~-~~~~g  220 (390)
                      .|.|.+.+++.+..++..+++.......   -...+..++||+||||||||++|+++|..++.+|+.+++..+. .+|+|
T Consensus        72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG  151 (412)
T PRK05342         72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG  151 (412)
T ss_pred             HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence            4899999999997777543333211110   0112457899999999999999999999999999999988765 46777


Q ss_pred             hHHHH-HHHHHHH----HHhcCCeEEEEcCCCCCCCh
Q psy11689        221 EAEQN-VTQLFHR----ARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       221 ~~~~~-i~~~f~~----A~~~~p~il~lDEid~~l~~  252 (390)
                      ..... +..++..    .....++||||||+|.+...
T Consensus       152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~  188 (412)
T PRK05342        152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK  188 (412)
T ss_pred             chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence            64433 4444432    23457899999999999754

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.00  E-value=2.6e-09  Score=104.22  Aligned_cols=69  Identities=26%  Similarity=0.401  Sum_probs=53.6

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----chh
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----RVL  207 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----~~~  207 (390)
                      .|.+++....++++.|.+.+++.+...+..             ....+++|+||||||||+++++++++...     +++
T Consensus         4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~   70 (337)
T PRK12402          4 LWTEKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFT   70 (337)
T ss_pred             chHHhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceE
Confidence            588888888888999999999998887753             12236999999999999999999988642     345


Q ss_pred             ccccccc
Q psy11689        208 AASAAQL  214 (390)
Q Consensus       208 ~i~~~~~  214 (390)
                      .+++.++
T Consensus        71 ~i~~~~~   77 (337)
T PRK12402         71 EFNVADF   77 (337)
T ss_pred             Eechhhh
Confidence            5555443

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.00  E-value=2.3e-09  Score=105.96  Aligned_cols=211  Identities=12%  Similarity=0.169  Sum_probs=110.7

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---------cchhccccccc
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---------YRVLAASAAQL  214 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---------~~~~~i~~~~~  214 (390)
                      +.+.|-++..+.+...+.....        + ..+..++|+||||||||+++++++.++.         +.++++++...
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~   85 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL   85 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence            3688889988888887754221        1 3456799999999999999999997643         45666666443


Q ss_pred             cCcc-------------------hh-hHHHHHHHHHHHHH-hcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--------
Q psy11689        215 YSPY-------------------VG-EAEQNVTQLFHRAR-LAAPAILFIDEIERTYNCEYREQTADNAKKP--------  265 (390)
Q Consensus       215 ~~~~-------------------~g-~~~~~i~~~f~~A~-~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--------  265 (390)
                      ...+                   .+ ...+.+..++.... ..++.||+|||+|.+.+..  +.....+...        
T Consensus        86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--~~~L~~l~~~~~~~~~~~  163 (365)
T TIGR02928        86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--DDLLYQLSRARSNGDLDN  163 (365)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--cHHHHhHhccccccCCCC
Confidence            2210                   00 01222344444433 3457899999999997332  1222222211        


Q ss_pred             -CCcEEEeccCHHHHHhcCchhHHHhHHHhhhhcCC--chhHHHhhccccc--ccCCCCCCCCcch---hhhcCCCCCCC
Q psy11689        266 -RIPRTNGGYREQTADTANKPRIQRTKREYREQTAD--TAHKTRISRTNRG--YREKTADTANKPR---IPRTNRGYREY  337 (390)
Q Consensus       266 -~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l~~l~~--~~~r~~I~~~n~~--~r~~~~~~vdl~~---la~~t~gfs~~  337 (390)
                       .+..+..++.+..... -.+++...+......++.  ..+...|+.....  ......++.-++.   ++..+.|.   
T Consensus       164 ~~v~lI~i~n~~~~~~~-l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd---  239 (365)
T TIGR02928       164 AKVGVIGISNDLKFREN-LDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD---  239 (365)
T ss_pred             CeEEEEEEECCcchHhh-cCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC---
Confidence             1222333333222111 111121111101111222  3334444322111  1111111111222   33444454   


Q ss_pred             cHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689        338 SAQNANTANKPRIQRTKREYREQTADTANKPR  369 (390)
Q Consensus       338 gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~  369 (390)
                      ....-.++..|...|..++...|+.+++.++.
T Consensus       240 ~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~  271 (365)
T TIGR02928       240 ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQ  271 (365)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence            34455688899998988888899999999865

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.99  E-value=1.8e-09  Score=89.94  Aligned_cols=80  Identities=29%  Similarity=0.405  Sum_probs=62.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccc---hhccccccccCcc--------------hhhHHHHHHHHHHHHHhcCCeE
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYR---VLAASAAQLYSPY--------------VGEAEQNVTQLFHRARLAAPAI  240 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~---~~~i~~~~~~~~~--------------~g~~~~~i~~~f~~A~~~~p~i  240 (390)
                      +..++|+||||||||++++.+|..+...   ++.+++......+              ..........++..+....|++
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV   81 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            5679999999999999999999998765   6666665543321              1234456778999999888999


Q ss_pred             EEEcCCCCCCChhhHHH
Q psy11689        241 LFIDEIERTYNCEYREQ  257 (390)
Q Consensus       241 l~lDEid~~l~~r~~~~  257 (390)
                      |++||++.+.+......
T Consensus        82 iiiDei~~~~~~~~~~~   98 (148)
T smart00382       82 LILDEITSLLDAEQEAL   98 (148)
T ss_pred             EEEECCcccCCHHHHHH
Confidence            99999999998766543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.99  E-value=2.3e-09  Score=116.59  Aligned_cols=100  Identities=22%  Similarity=0.300  Sum_probs=81.3

Q ss_pred             CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cchhccc
Q psy11689        141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRVLAAS  210 (390)
Q Consensus       141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~~~i~  210 (390)
                      ..++.+.|-++..+.+.+++..             ....+++|+||||||||++++.+|....          .+++.++
T Consensus       176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~  242 (821)
T CHL00095        176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD  242 (821)
T ss_pred             CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence            3444788888888887777643             3566899999999999999999997753          5667777


Q ss_pred             ccccc--CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        211 AAQLY--SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       211 ~~~~~--~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      ...+.  ..|.|+.++.++.+|..+....+.||||||++.+++..
T Consensus       243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g  287 (821)
T CHL00095        243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAG  287 (821)
T ss_pred             HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCC
Confidence            77666  46778889999999999988889999999999998754

>KOG0727|consensus

Probab=98.98  E-value=1.1e-10  Score=106.28  Aligned_cols=87  Identities=28%  Similarity=0.413  Sum_probs=71.0

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCCCCccCcccccc------ccCCcccchH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPTAPQGRETELPF------TKLNEEVELS   76 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~~~~~r~~~l~~------~~~~~~v~l~   76 (390)
                      |+..-+-||=||++|||.|++||||+|              |||++ .|+.|. +.-|..-|-|      |.++++||+ 
T Consensus       287 dgfdq~~nvkvimatnradtldpallr--------------pgrldrkiefpl-pdrrqkrlvf~titskm~ls~~vdl-  350 (408)
T KOG0727|consen  287 DGFDQTTNVKVIMATNRADTLDPALLR--------------PGRLDRKIEFPL-PDRRQKRLVFSTITSKMNLSDEVDL-  350 (408)
T ss_pred             cCcCcccceEEEEecCcccccCHhhcC--------------CccccccccCCC-CchhhhhhhHHhhhhcccCCcccCH-
Confidence            455556799999999999999999999              99999 777776 2233333333      889999999 


Q ss_pred             HHHHHhhcCCccccccccccccchhhhcCC
Q psy11689         77 ENVQREEEGIAGENLQRGGGEEGIELREGG  106 (390)
Q Consensus        77 ~~la~~t~G~~g~~l~~~~~ea~~~~~~~~  106 (390)
                      +.+.....-++|++|.++|.|+++.+...+
T Consensus       351 e~~v~rpdkis~adi~aicqeagm~avr~n  380 (408)
T KOG0727|consen  351 EDLVARPDKISGADINAICQEAGMLAVREN  380 (408)
T ss_pred             HHHhcCccccchhhHHHHHHHHhHHHHHhc
Confidence            888889999999999999999999865543

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.98  E-value=2.4e-09  Score=108.44  Aligned_cols=187  Identities=11%  Similarity=0.084  Sum_probs=98.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      ...++||||||+|||+|+++++++.     +..++++++.++...+.......-..-|...+..++++|+|||++.+.+.
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~  209 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK  209 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence            3469999999999999999999875     24556677666544433221111112344444457899999999999876


Q ss_pred             hhHH-HHH---HHhhcCCCcEEEec-cCHHHHHhcCchhHHHhHH-Hhh--hhcCCchhHHHhhcccccccCCCCCCCCc
Q psy11689        253 EYRE-QTA---DNAKKPRIPRTNGG-YREQTADTANKPRIQRTKR-EYR--EQTADTAHKTRISRTNRGYREKTADTANK  324 (390)
Q Consensus       253 r~~~-~~~---~~~~~~~~~~i~~~-~~~~~i~~t~~~~~~r~~~-~~l--~~l~~~~~r~~I~~~n~~~r~~~~~~vdl  324 (390)
                      ...+ ...   ..+...+...+..+ +.+..+..... ++...+. ...  ...|+...+..|+......+....++--+
T Consensus       210 ~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~-rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~  288 (440)
T PRK14088        210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD-RLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVL  288 (440)
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH-HHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            5332 222   22223333444444 44443332211 2211111 111  12344556666643222222222333335


Q ss_pred             chhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689        325 PRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPR  369 (390)
Q Consensus       325 ~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~  369 (390)
                      ..||++..| +  .++|+.++.+-...+...+ ..+|.+...+..
T Consensus       289 ~~Ia~~~~~-~--~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L  329 (440)
T PRK14088        289 NFVAENVDD-N--LRRLRGAIIKLLVYKETTG-EEVDLKEAILLL  329 (440)
T ss_pred             HHHHhcccc-C--HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence            667776654 3  6778888777655544333 345655554444

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.97  E-value=5e-09  Score=104.67  Aligned_cols=217  Identities=13%  Similarity=0.104  Sum_probs=113.5

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCc--
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSP--  217 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~--  217 (390)
                      .+.|-++..+++...+.....         -..+..++|+||||+|||++++.++.++     ++.++++++......  
T Consensus        31 ~l~~Re~e~~~l~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~  101 (394)
T PRK00411         31 NLPHREEQIEELAFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA  101 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence            577777777777777643211         1245679999999999999999999775     356667766533211  


Q ss_pred             --------ch-------h-hHHHHHHHHHHHHH-hcCCeEEEEcCCCCCCChhhHHHHHHHhhc-------CCCcEEEec
Q psy11689        218 --------YV-------G-EAEQNVTQLFHRAR-LAAPAILFIDEIERTYNCEYREQTADNAKK-------PRIPRTNGG  273 (390)
Q Consensus       218 --------~~-------g-~~~~~i~~~f~~A~-~~~p~il~lDEid~~l~~r~~~~~~~~~~~-------~~~~~i~~~  273 (390)
                              ..       + ...+.+..+..... ...+.||+|||+|.+....... ....+..       ..+..+..+
T Consensus       102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~-~l~~l~~~~~~~~~~~v~vI~i~  180 (394)
T PRK00411        102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGND-VLYSLLRAHEEYPGARIGVIGIS  180 (394)
T ss_pred             HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCch-HHHHHHHhhhccCCCeEEEEEEE
Confidence                    00       1 11222233333332 2356899999999987322222 2222211       122334444


Q ss_pred             cCHHHHHhcCchhHHHhHHHhhhhcCC--chhHHHhhcccc--cccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHH
Q psy11689        274 YREQTADTANKPRIQRTKREYREQTAD--TAHKTRISRTNR--GYREKTADTANKPRIPRTNRGYREYSAQNANTANKPR  349 (390)
Q Consensus       274 ~~~~~i~~t~~~~~~r~~~~~l~~l~~--~~~r~~I~~~n~--~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~  349 (390)
                      +....... -.+++...+......++.  ..+...|+....  .......++..++.+++.+.+.+-.....-.++..|.
T Consensus       181 ~~~~~~~~-l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~  259 (394)
T PRK00411        181 SDLTFLYI-LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG  259 (394)
T ss_pred             CCcchhhh-cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            43322111 112222111111112222  233333331111  1111122323345666666443301334457888999


Q ss_pred             HHHHHccccccChhhhhhhHHHH
Q psy11689        350 IQRTKREYREQTADTANKPRIQR  372 (390)
Q Consensus       350 ~~a~~r~~~~i~~~~~~~~~~~~  372 (390)
                      ..|..++...|+.+++.+++-..
T Consensus       260 ~~a~~~~~~~I~~~~v~~a~~~~  282 (394)
T PRK00411        260 LIAEREGSRKVTEEDVRKAYEKS  282 (394)
T ss_pred             HHHHHcCCCCcCHHHHHHHHHHH
Confidence            99988888899999999887543

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.96  E-value=2.1e-09  Score=109.49  Aligned_cols=187  Identities=12%  Similarity=0.114  Sum_probs=102.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      ...++||||||+|||+|++++++++     +..++++++.++...+...........|... ...+++|+|||++.+.+.
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~  226 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGK  226 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCC
Confidence            3569999999999999999999886     3446677776665444333222112233332 236889999999998776


Q ss_pred             hhHHH-HHH---HhhcCCCcEEEeccC-HHHHHhcCchhHHHhHH---HhhhhcCCchhHHHhhcccccccCCCCCCCCc
Q psy11689        253 EYREQ-TAD---NAKKPRIPRTNGGYR-EQTADTANKPRIQRTKR---EYREQTADTAHKTRISRTNRGYREKTADTANK  324 (390)
Q Consensus       253 r~~~~-~~~---~~~~~~~~~i~~~~~-~~~i~~t~~~~~~r~~~---~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl  324 (390)
                      +.... ...   .+...+...+..++. +..+..- .+++...+.   ...-..|+.+.+..|+......+....++--+
T Consensus       227 ~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l-~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l  305 (450)
T PRK00149        227 ERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL-EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVL  305 (450)
T ss_pred             HHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH-HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            53322 222   222233334444433 2222221 122221111   01112345566666653333222323333335


Q ss_pred             chhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHH
Q psy11689        325 PRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRI  370 (390)
Q Consensus       325 ~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~  370 (390)
                      +.||++..| +  ..+|+.++......+...+ +.+|.+.+.+..-
T Consensus       306 ~~ia~~~~~-~--~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~  347 (450)
T PRK00149        306 EFIAKNITS-N--VRELEGALNRLIAYASLTG-KPITLELAKEALK  347 (450)
T ss_pred             HHHHcCcCC-C--HHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHH
Confidence            667776654 3  6788888887776665443 4567666555543

>PLN03025 replication factor C subunit; Provisional

Probab=98.96  E-value=8.6e-09  Score=100.29  Aligned_cols=103  Identities=17%  Similarity=0.290  Sum_probs=67.6

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc-----hh
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR-----VL  207 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~-----~~  207 (390)
                      .|.++|.+..++++.|.+++.+.|+.++..             ....+++|+||||||||+++.++|+++..+     ++
T Consensus         2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~   68 (319)
T PLN03025          2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVL   68 (319)
T ss_pred             ChhhhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence            588888888999999999999888876543             123469999999999999999999987322     23


Q ss_pred             ccccccccCcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCC
Q psy11689        208 AASAAQLYSPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYN  251 (390)
Q Consensus       208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~  251 (390)
                      .++.++..+  .......+ ..|....    ...+.|++|||+|.+-.
T Consensus        69 eln~sd~~~--~~~vr~~i-~~~~~~~~~~~~~~~kviiiDE~d~lt~  113 (319)
T PLN03025         69 ELNASDDRG--IDVVRNKI-KMFAQKKVTLPPGRHKIVILDEADSMTS  113 (319)
T ss_pred             eeccccccc--HHHHHHHH-HHHHhccccCCCCCeEEEEEechhhcCH
Confidence            333332111  01111111 1222211    12467999999999754

>TIGR00763 lon ATP-dependent protease La

Probab=98.96  E-value=1e-09  Score=118.61  Aligned_cols=100  Identities=25%  Similarity=0.331  Sum_probs=75.4

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccc---------c
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQL---------Y  215 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~---------~  215 (390)
                      ++.|++.+++.+.+.+......       +...+..++|+||||||||++++++|..++.+++.++....         .
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~  393 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR  393 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence            5789999999998876542211       11245579999999999999999999999988887754332         1


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      ..|.|.....+.+.|..+....| ||||||+|.+...
T Consensus       394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~  429 (775)
T TIGR00763       394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSS  429 (775)
T ss_pred             CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCc
Confidence            34566666677778888876666 8999999999753

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.96  E-value=4.7e-09  Score=95.95  Aligned_cols=64  Identities=14%  Similarity=0.108  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHhcCch
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADTANKP  285 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~t~~~  285 (390)
                      +.+..+.++++|....|.+|+.||+...+|..+...+...+...    +.+.+.++|.+.....++|.
T Consensus       145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~  212 (226)
T COG1136         145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRV  212 (226)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEE
Confidence            34666789999999999999999999999999998887766443    67899999998887777763

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.95  E-value=7.9e-09  Score=105.79  Aligned_cols=215  Identities=13%  Similarity=0.080  Sum_probs=115.5

Q ss_pred             ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhc--
Q psy11689        131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA--  208 (390)
Q Consensus       131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~--  208 (390)
                      ...|..++....|+++.|.+.+.+.+...+...            ..+..+||+||+|+|||++|+++|+.+++....  
T Consensus         8 y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~   75 (507)
T PRK06645          8 YIPFARKYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITE   75 (507)
T ss_pred             ccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccc
Confidence            455777777888889999999999888766431            345789999999999999999999887642110  


Q ss_pred             ----------cccc--------ccc--CcchhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        209 ----------ASAA--------QLY--SPYVGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       209 ----------i~~~--------~~~--~~~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                                -.|.        ++.  ......+...++.++..+...    ...|+||||++.+-. ..-+.....+..
T Consensus        76 ~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-~a~naLLk~LEe  154 (507)
T PRK06645         76 NTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-GAFNALLKTLEE  154 (507)
T ss_pred             CcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-HHHHHHHHHHhh
Confidence                      0000        110  000112335566777666433    356999999997643 223333344443


Q ss_pred             CCCcEEEeccCHHHHHhcCchhHHHhHHHhh--hhcCC--chhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHH
Q psy11689        265 PRIPRTNGGYREQTADTANKPRIQRTKREYR--EQTAD--TAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQ  340 (390)
Q Consensus       265 ~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l--~~l~~--~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaD  340 (390)
                      ..-..      .++++++....+..++....  ..+..  ..+...++...........++..+..|++.++| +  ..|
T Consensus       155 pp~~~------vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-s--lR~  225 (507)
T PRK06645        155 PPPHI------IFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-S--ARD  225 (507)
T ss_pred             cCCCE------EEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C--HHH
Confidence            21111      11112222222222222111  11111  122111111111111122222335678888877 5  788


Q ss_pred             HHHHHHHHHHHHHHccccccChhhhhhh
Q psy11689        341 NANTANKPRIQRTKREYREQTADTANKP  368 (390)
Q Consensus       341 L~~l~~~A~~~a~~r~~~~i~~~~~~~~  368 (390)
                      +.+++..+..++... ...||.+++.+.
T Consensus       226 al~~Ldkai~~~~~~-~~~It~~~V~~l  252 (507)
T PRK06645        226 AVSILDQAASMSAKS-DNIISPQVINQM  252 (507)
T ss_pred             HHHHHHHHHHhhccC-CCCcCHHHHHHH
Confidence            888888887665322 235777776543

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.95  E-value=7.4e-09  Score=107.39  Aligned_cols=115  Identities=17%  Similarity=0.146  Sum_probs=71.4

Q ss_pred             ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh---------
Q psy11689        137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL---------  207 (390)
Q Consensus       137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~---------  207 (390)
                      ++....|++|.|.+.+++.|...+...            ..+..+||+||+|+|||++|+++|+.+++..-         
T Consensus         8 KyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C   75 (702)
T PRK14960          8 KYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC   75 (702)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence            445556669999999999998887531            23567899999999999999999988764210         


Q ss_pred             ----cccc---cccc--CcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        208 ----AASA---AQLY--SPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       208 ----~i~~---~~~~--~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                          .+..   .++.  ..........++.+...+.    ..+..|+||||++.+- ....+.....+..
T Consensus        76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-~~A~NALLKtLEE  144 (702)
T PRK14960         76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-THSFNALLKTLEE  144 (702)
T ss_pred             HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-HHHHHHHHHHHhc
Confidence                0000   0110  0000112244555555443    2345799999999764 3334445455544

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.95  E-value=1.2e-10  Score=115.95  Aligned_cols=82  Identities=24%  Similarity=0.328  Sum_probs=71.5

Q ss_pred             hhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHH
Q psy11689          8 VCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQR   81 (390)
Q Consensus         8 ~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~   81 (390)
                      -..++.++++||+++.+|+|++|              ||||+ .|++|. +.++|+.|+.+    +.+++++++ +.+|+
T Consensus       281 ~~~~v~VI~aTN~~d~LDpAllR--------------~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~-~~la~  345 (398)
T PTZ00454        281 QTTNVKVIMATNRADTLDPALLR--------------PGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL-EDFVS  345 (398)
T ss_pred             CCCCEEEEEecCCchhCCHHHcC--------------CCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH-HHHHH
Confidence            34688999999999999999999              99999 777777 46788888887    567889999 88999


Q ss_pred             hhcCCccccccccccccchhhhc
Q psy11689         82 EEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        82 ~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      .|+||+|+||..+|.+|++.+..
T Consensus       346 ~t~g~sgaDI~~l~~eA~~~A~r  368 (398)
T PTZ00454        346 RPEKISAADIAAICQEAGMQAVR  368 (398)
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987543

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.94  E-value=3.3e-09  Score=106.58  Aligned_cols=186  Identities=13%  Similarity=0.121  Sum_probs=100.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      ...++||||+|+|||+|++++++++     +..++++++.++...+.......-...|.... ..+++|+|||++.+.+.
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~  214 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK  214 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence            4569999999999999999999876     45566777666544333222111111232222 34789999999998876


Q ss_pred             hhHHH-HH---HHhhcCCCcEEEeccC-HHHHHhcCchhHHHhHH---HhhhhcCCchhHHHhhcccccccCCCCCCCCc
Q psy11689        253 EYREQ-TA---DNAKKPRIPRTNGGYR-EQTADTANKPRIQRTKR---EYREQTADTAHKTRISRTNRGYREKTADTANK  324 (390)
Q Consensus       253 r~~~~-~~---~~~~~~~~~~i~~~~~-~~~i~~t~~~~~~r~~~---~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl  324 (390)
                      +..+. ..   ..+.......+..+.. +..+... .+++...+.   ......++.+.|..|+......+....++-.+
T Consensus       215 ~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l-~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l  293 (405)
T TIGR00362       215 ERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGL-EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVL  293 (405)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhh-hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            54332 22   2222223333443332 2222221 122221111   11112345566666653333333333343445


Q ss_pred             chhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689        325 PRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPR  369 (390)
Q Consensus       325 ~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~  369 (390)
                      ..||++..+ +  ..+|+.++++-...|...+ +.+|.+.+.+..
T Consensus       294 ~~ia~~~~~-~--~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L  334 (405)
T TIGR00362       294 EFIAKNIRS-N--VRELEGALNRLLAYASLTG-KPITLELAKEAL  334 (405)
T ss_pred             HHHHHhcCC-C--HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence            667766544 3  7788888887766664433 457766555544

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.94  E-value=3e-09  Score=115.75  Aligned_cols=101  Identities=25%  Similarity=0.307  Sum_probs=77.9

Q ss_pred             CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhcc
Q psy11689        140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAA  209 (390)
Q Consensus       140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~i  209 (390)
                      ...++++.|-+.....+.+++..             ....+++|+||||||||++++++|...          +.+++.+
T Consensus       174 ~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l  240 (857)
T PRK10865        174 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL  240 (857)
T ss_pred             cCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence            44556788887765555555432             355679999999999999999999886          5666777


Q ss_pred             cccccc--CcchhhHHHHHHHHHHHHHh-cCCeEEEEcCCCCCCChh
Q psy11689        210 SAAQLY--SPYVGEAEQNVTQLFHRARL-AAPAILFIDEIERTYNCE  253 (390)
Q Consensus       210 ~~~~~~--~~~~g~~~~~i~~~f~~A~~-~~p~il~lDEid~~l~~r  253 (390)
                      +...+.  ..|.|+.++.++.+|..+.. ..|+||||||++.+.+.+
T Consensus       241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~  287 (857)
T PRK10865        241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAG  287 (857)
T ss_pred             ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCC
Confidence            666655  44778888999999988654 578999999999998764

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.94  E-value=3.3e-09  Score=108.94  Aligned_cols=104  Identities=22%  Similarity=0.306  Sum_probs=76.8

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh-------ccc------------h--------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-------VYR------------V--------------------------  206 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~-------~~~------------~--------------------------  206 (390)
                      ++.+++|..+++.||+|||||+|.|++|+-.       ++|            +                          
T Consensus       413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~  492 (604)
T COG4178         413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA  492 (604)
T ss_pred             eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHH
Confidence            4567899999999999999999999999221       011            0                          


Q ss_pred             --hccccccc---------cCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEec
Q psy11689        207 --LAASAAQL---------YSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGG  273 (390)
Q Consensus       207 --~~i~~~~~---------~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~  273 (390)
                        ..+...++         |+.... ..++.+.+|+++..++|.++||||..+.+|...+....+.+..  +..+.+.++
T Consensus       493 vL~~vgL~~L~~rl~~~~~W~~vLS-~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~  571 (604)
T COG4178         493 VLHKVGLGDLAERLDEEDRWDRVLS-GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVG  571 (604)
T ss_pred             HHHHcCcHHHHHHHhccCcHhhhcC-hhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEec
Confidence              00111111         111111 2234467999999999999999999999999999999898888  789999999


Q ss_pred             cCH
Q psy11689        274 YRE  276 (390)
Q Consensus       274 ~~~  276 (390)
                      |+.
T Consensus       572 Hr~  574 (604)
T COG4178         572 HRP  574 (604)
T ss_pred             cch
Confidence            985

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.93  E-value=6.8e-09  Score=92.91  Aligned_cols=83  Identities=14%  Similarity=0.067  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCchhHHHhHHHhhhhcC
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANKPRIQRTKREYREQTA  299 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l~~l~  299 (390)
                      +.|..+...++|...+|.||++||+.+.+|+-+...+.+.+..  ...|.+.++|.+...+..++    ++.+++...+-
T Consensus       152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD----~taFf~~G~Lv  227 (253)
T COG1117         152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSD----YTAFFYLGELV  227 (253)
T ss_pred             hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhH----hhhhhcccEEE
Confidence            3456667888999999999999999999999887776665544  47899999999987776554    34566666666


Q ss_pred             CchhHHHhh
Q psy11689        300 DTAHKTRIS  308 (390)
Q Consensus       300 ~~~~r~~I~  308 (390)
                      ++.....|+
T Consensus       228 E~g~T~~iF  236 (253)
T COG1117         228 EFGPTDKIF  236 (253)
T ss_pred             EEcCHHhhh
Confidence            666666663

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.92  E-value=1.1e-08  Score=103.15  Aligned_cols=96  Identities=27%  Similarity=0.398  Sum_probs=67.8

Q ss_pred             cccCCCCCCCccChHHHHHH---HHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccc
Q psy11689        136 GEEEGAFVPELGGLKGVRAL---MEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA  212 (390)
Q Consensus       136 ~~~~~~~~~~i~g~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~  212 (390)
                      +.+....++++.|.+.....   +...+..             ....+++|+||||||||++|+++|...+.+++.+++.
T Consensus         4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~   70 (413)
T PRK13342          4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV   70 (413)
T ss_pred             hhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence            34445566689998887655   6666532             2345799999999999999999999998888777654


Q ss_pred             cccCcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCC
Q psy11689        213 QLYSPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYN  251 (390)
Q Consensus       213 ~~~~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~  251 (390)
                      ..       ....++.++..+.    .....||||||++.+..
T Consensus        71 ~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~  106 (413)
T PRK13342         71 TS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK  106 (413)
T ss_pred             cc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH
Confidence            21       1233445555543    23678999999998753

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.92  E-value=6.1e-09  Score=106.02  Aligned_cols=59  Identities=20%  Similarity=0.241  Sum_probs=46.5

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      |...+.+..++++.|.+.+++.+...+...            ..+..+||+|||||||||+|+++|+.++.
T Consensus         4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962          4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             hHHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            344556667779999999988888776542            24556899999999999999999988764

>KOG0731|consensus

Probab=98.92  E-value=2.8e-10  Score=118.87  Aligned_cols=85  Identities=27%  Similarity=0.384  Sum_probs=72.8

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc----ccC-Ccccch
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF----TKL-NEEVEL   75 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~----~~~-~~~v~l   75 (390)
                      |+-.-.-+|+++++|||+|-+|+||+|              |||||   .|++|+ ..+|.+|+.+    .++ .+++++
T Consensus       443 Dgf~~~~~vi~~a~tnr~d~ld~allr--------------pGRfdr~i~i~~p~-~~~r~~i~~~h~~~~~~~~e~~dl  507 (774)
T KOG0731|consen  443 DGFETSKGVIVLAATNRPDILDPALLR--------------PGRFDRQIQIDLPD-VKGRASILKVHLRKKKLDDEDVDL  507 (774)
T ss_pred             cCCcCCCcEEEEeccCCccccCHHhcC--------------CCccccceeccCCc-hhhhHHHHHHHhhccCCCcchhhH
Confidence            455556679999999999999999999              99999   556666 8899999998    445 488999


Q ss_pred             HHHHHHhhcCCccccccccccccchhhhc
Q psy11689         76 SENVQREEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        76 ~~~la~~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                       .+||..|.||+|+||..+|.|++..+..
T Consensus       508 -~~~a~~t~gf~gadl~n~~neaa~~a~r  535 (774)
T KOG0731|consen  508 -SKLASLTPGFSGADLANLCNEAALLAAR  535 (774)
T ss_pred             -HHHHhcCCCCcHHHHHhhhhHHHHHHHH
Confidence             5599999999999999999999987543

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.92  E-value=9.4e-09  Score=99.67  Aligned_cols=108  Identities=17%  Similarity=0.192  Sum_probs=77.1

Q ss_pred             ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      ...|.+++....++++.|.+.+++.+...+...            ..+..++++||||+|||+++++++++.+.+++.++
T Consensus         8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~   75 (316)
T PHA02544          8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN   75 (316)
T ss_pred             CCcceeccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence            467999999999999999999999998887521            23456777999999999999999999888888887


Q ss_pred             cccccCcchhhHHHHHHHHHHHH-HhcCCeEEEEcCCCCCCChh
Q psy11689        211 AAQLYSPYVGEAEQNVTQLFHRA-RLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       211 ~~~~~~~~~g~~~~~i~~~f~~A-~~~~p~il~lDEid~~l~~r  253 (390)
                      +.+  .. .......+....... ....+.+|+|||++.+....
T Consensus        76 ~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~  116 (316)
T PHA02544         76 GSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD  116 (316)
T ss_pred             cCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHH
Confidence            765  21 222112222211111 11357899999999884443

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=98.91  E-value=1.9e-09  Score=111.66  Aligned_cols=223  Identities=13%  Similarity=0.096  Sum_probs=118.7

Q ss_pred             ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh--------
Q psy11689        131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS--------  202 (390)
Q Consensus       131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~--------  202 (390)
                      ...|.+.+....|+++.|.+...+.+...+..             ..+.++||+||||||||++|+++...+        
T Consensus        52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~  118 (531)
T TIGR02902        52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF  118 (531)
T ss_pred             cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence            44677777777788999999888888755321             246789999999999999999997642        


Q ss_pred             --ccchhcccccccc-C------cchhhHHHHH---HHHHH----------HHHhcCCeEEEEcCCCCCCChhhHHHHHH
Q psy11689        203 --VYRVLAASAAQLY-S------PYVGEAEQNV---TQLFH----------RARLAAPAILFIDEIERTYNCEYREQTAD  260 (390)
Q Consensus       203 --~~~~~~i~~~~~~-~------~~~g~~~~~i---~~~f~----------~A~~~~p~il~lDEid~~l~~r~~~~~~~  260 (390)
                        +.+|+.+++.... .      ...+.....+   ...|.          ........+|||||++.+-. ...+....
T Consensus       119 ~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-~~q~~LL~  197 (531)
T TIGR02902       119 KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-VQMNKLLK  197 (531)
T ss_pred             CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-HHHHHHHH
Confidence              2466777764310 0      0011000000   00000          11123457999999999643 33333333


Q ss_pred             HhhcCCCcEE------------------E---eccCH-HHHHhcCchhHH-HhHHHh--hhhcCC--chhHHHhhccccc
Q psy11689        261 NAKKPRIPRT------------------N---GGYRE-QTADTANKPRIQ-RTKREY--REQTAD--TAHKTRISRTNRG  313 (390)
Q Consensus       261 ~~~~~~~~~i------------------~---~~~~~-~~i~~t~~~~~~-r~~~~~--l~~l~~--~~~r~~I~~~n~~  313 (390)
                      .+........                  .   ..... .+.+|++.++-+ ..++..  ...++.  ..+...|+.....
T Consensus       198 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~  277 (531)
T TIGR02902       198 VLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE  277 (531)
T ss_pred             HHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence            3322111100                  0   00001 123344443321 111111  111221  3334444311111


Q ss_pred             ccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHH
Q psy11689        314 YREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQ  371 (390)
Q Consensus       314 ~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~  371 (390)
                      ......++.-++.|+..+  ++  ++++.++++.|+..|..+++..|+.+|+....-+
T Consensus       278 k~~i~is~~al~~I~~y~--~n--~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~  331 (531)
T TIGR02902       278 KIGINLEKHALELIVKYA--SN--GREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN  331 (531)
T ss_pred             HcCCCcCHHHHHHHHHhh--hh--HHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence            111112222234444433  25  9999999999999998888889999999988643

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.91  E-value=5.8e-09  Score=112.12  Aligned_cols=62  Identities=21%  Similarity=0.199  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .|..+-.+++|...+|.|+++||+.+.+|..++....+.+.....|.+.++|++.++..+++
T Consensus       619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~  680 (710)
T TIGR03796       619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDE  680 (710)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence            45666789999999999999999999999999999999888888999999999888777665

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.91  E-value=1.1e-08  Score=105.84  Aligned_cols=130  Identities=17%  Similarity=0.139  Sum_probs=78.1

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--------
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--------  205 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--------  205 (390)
                      |..+|....|++|.|.+.+++.|...+...            +.+..+||+||+|+|||++++.+|+.+.+.        
T Consensus         6 LarKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~   73 (700)
T PRK12323          6 LARKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI   73 (700)
T ss_pred             HHHHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence            444556667779999999999999888642            235568999999999999999999887651        


Q ss_pred             ----h------hcccc---ccccC--cchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhcC-
Q psy11689        206 ----V------LAASA---AQLYS--PYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKKP-  265 (390)
Q Consensus       206 ----~------~~i~~---~~~~~--~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~~-  265 (390)
                          +      ..+..   .+++.  .....+...++++...+.    .....|+||||+|.+-. ...+..+..+... 
T Consensus        74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-~AaNALLKTLEEPP  152 (700)
T PRK12323         74 TAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-HAFNAMLKTLEEPP  152 (700)
T ss_pred             CCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-HHHHHHHHhhccCC
Confidence                0      00100   01110  000112244555555543    33457999999998743 3334444444332 


Q ss_pred             -CCcEEEeccCH
Q psy11689        266 -RIPRTNGGYRE  276 (390)
Q Consensus       266 -~~~~i~~~~~~  276 (390)
                       ....+..++..
T Consensus       153 ~~v~FILaTtep  164 (700)
T PRK12323        153 EHVKFILATTDP  164 (700)
T ss_pred             CCceEEEEeCCh
Confidence             23344444433

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=98.90  E-value=3.3e-09  Score=105.72  Aligned_cols=108  Identities=29%  Similarity=0.339  Sum_probs=75.4

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcC----C-CCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc-Ccc
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLA----I-PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY-SPY  218 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~----~-~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~-~~~  218 (390)
                      .|.|.+..++.+..++..+.+.........    + ....++||+||||||||++|+++|..++.++..+++..+. .+|
T Consensus        78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy  157 (413)
T TIGR00382        78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY  157 (413)
T ss_pred             eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence            589999999999877744333221100000    1 1246899999999999999999999999999888877654 357


Q ss_pred             hhhH-HHHHHHHHHHH----HhcCCeEEEEcCCCCCCCh
Q psy11689        219 VGEA-EQNVTQLFHRA----RLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       219 ~g~~-~~~i~~~f~~A----~~~~p~il~lDEid~~l~~  252 (390)
                      +|.. +..+..++..+    ...+++||||||+|.+...
T Consensus       158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~  196 (413)
T TIGR00382       158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK  196 (413)
T ss_pred             ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence            7764 33444444422    3457889999999988763

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.90  E-value=1.2e-08  Score=102.86  Aligned_cols=120  Identities=12%  Similarity=0.129  Sum_probs=74.0

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh----
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL----  207 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~----  207 (390)
                      ..|..++....|+++.|.+.+...|...+...            ..+..+||+||+|||||++|+++|+.+++.-.    
T Consensus         6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~   73 (484)
T PRK14956          6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE   73 (484)
T ss_pred             chhHHHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc
Confidence            34566677777889999999999888877541            23456899999999999999999988765210    


Q ss_pred             ---------cc---cccccc--CcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        208 ---------AA---SAAQLY--SPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       208 ---------~i---~~~~~~--~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                               .+   ...++.  ......+...++.+...+.    .....|+||||++.+- ....+.....+..
T Consensus        74 pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-~~A~NALLKtLEE  147 (484)
T PRK14956         74 PCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-DQSFNALLKTLEE  147 (484)
T ss_pred             ccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-HHHHHHHHHHhhc
Confidence                     00   000111  0001111234454444433    3356799999999874 3333444444443

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.89  E-value=7.3e-09  Score=110.93  Aligned_cols=63  Identities=21%  Similarity=0.275  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.|..+-.+++|...+|.|+++||+.+.+|..++....+.+.....|.+.++|++.++..+++
T Consensus       591 GGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~  653 (686)
T TIGR03797       591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADR  653 (686)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCE
Confidence            346667789999999999999999999999999999988888777899999999887777665

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.89  E-value=3e-08  Score=98.22  Aligned_cols=58  Identities=19%  Similarity=0.220  Sum_probs=45.8

Q ss_pred             ccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        135 EGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       135 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      ..++.+..+++|.|.+.+++.+...+...            ..+..+||+||||+|||++|+++|+...+
T Consensus         7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961          7 ARKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             HHHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            34455566669999999999988877531            23456899999999999999999988763

>KOG0055|consensus

Probab=98.89  E-value=5.5e-09  Score=113.84  Aligned_cols=114  Identities=24%  Similarity=0.284  Sum_probs=91.3

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHH----------------------------------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLA----------------------------------------------------  199 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia----------------------------------------------------  199 (390)
                      ++.+++|..+.|+||+||||||+...+-                                                    
T Consensus      1010 ~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~ 1089 (1228)
T KOG0055|consen 1010 SLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE 1089 (1228)
T ss_pred             cEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC
Confidence            5678899999999999999999999997                                                    


Q ss_pred             -----------HhhccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        200 -----------AHSVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       200 -----------~~~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                                 +..+++-+..+.|+..+..+|+      +.|+.|-++++|...+|.||+|||+++.+|..++.-+++++
T Consensus      1090 ~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeAL 1169 (1228)
T KOG0055|consen 1090 EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEAL 1169 (1228)
T ss_pred             CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHH
Confidence                       1122233334445555555553      45778889999999999999999999999999998888888


Q ss_pred             hcC--CCcEEEeccCHHHHHhcCch
Q psy11689        263 KKP--RIPRTNGGYREQTADTANKP  285 (390)
Q Consensus       263 ~~~--~~~~i~~~~~~~~i~~t~~~  285 (390)
                      .+.  +.|++.++||+.+|..++.-
T Consensus      1170 d~a~~gRT~IvIAHRLSTIqnaD~I 1194 (1228)
T KOG0055|consen 1170 DRAMEGRTTIVIAHRLSTIQNADVI 1194 (1228)
T ss_pred             HHhhcCCcEEEEecchhhhhcCCEE
Confidence            664  68899999999999888763

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.89  E-value=7.2e-09  Score=94.56  Aligned_cols=59  Identities=14%  Similarity=0.096  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT  281 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~  281 (390)
                      .+..+-++++|....|.+|++||+.+.+|......+.+.+..    .+++.+.++|....+..
T Consensus       145 GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~  207 (252)
T COG1124         145 GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEH  207 (252)
T ss_pred             hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHH
Confidence            355566888999999999999999999999888777665533    47899999999877665

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.88  E-value=9.7e-09  Score=106.24  Aligned_cols=183  Identities=13%  Similarity=0.109  Sum_probs=100.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      ..++|||++|+|||+|++++++++     +..++++++.++...+...........|..- ..++++|+|||++.+.+..
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke  393 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE  393 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence            459999999999999999999876     3566788887776555443332222344433 3457999999999998866


Q ss_pred             hHHHHHH----HhhcCCCcEEEeccCH-HHHHhcCchhHHHhHH-Hh--hhhcCCchhHHHhhcccccccCCCCCCCCcc
Q psy11689        254 YREQTAD----NAKKPRIPRTNGGYRE-QTADTANKPRIQRTKR-EY--REQTADTAHKTRISRTNRGYREKTADTANKP  325 (390)
Q Consensus       254 ~~~~~~~----~~~~~~~~~i~~~~~~-~~i~~t~~~~~~r~~~-~~--l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~  325 (390)
                      ..+....    .+...+...+..++.. ..+. .-.+++...+. .+  -...++...|..|+......+....++--+.
T Consensus       394 ~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~-~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~  472 (617)
T PRK14086        394 STQEEFFHTFNTLHNANKQIVLSSDRPPKQLV-TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLE  472 (617)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEecCCChHhhh-hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            5433322    2233334444444432 2221 11223321111 11  1113456667666543333333333333344


Q ss_pred             hhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhh
Q psy11689        326 RIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANK  367 (390)
Q Consensus       326 ~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~  367 (390)
                      -|+++..+ +  ...|+.++.+-...+...+ +.+|.+..+.
T Consensus       473 yLa~r~~r-n--vR~LegaL~rL~a~a~~~~-~~itl~la~~  510 (617)
T PRK14086        473 FIASRISR-N--IRELEGALIRVTAFASLNR-QPVDLGLTEI  510 (617)
T ss_pred             HHHHhccC-C--HHHHHHHHHHHHHHHHhhC-CCCCHHHHHH
Confidence            55554332 2  6778887777655554433 3455554444

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.88  E-value=6.7e-09  Score=113.35  Aligned_cols=102  Identities=24%  Similarity=0.311  Sum_probs=77.0

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLA  208 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~  208 (390)
                      ....++.+.|-+.....+.+.+..             ....+++|+||||||||++++++|...          +.+++.
T Consensus       168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~  234 (852)
T TIGR03346       168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA  234 (852)
T ss_pred             hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence            344556788877766665555432             355778999999999999999999775          455666


Q ss_pred             ccccccc--CcchhhHHHHHHHHHHHHHhc-CCeEEEEcCCCCCCChh
Q psy11689        209 ASAAQLY--SPYVGEAEQNVTQLFHRARLA-APAILFIDEIERTYNCE  253 (390)
Q Consensus       209 i~~~~~~--~~~~g~~~~~i~~~f~~A~~~-~p~il~lDEid~~l~~r  253 (390)
                      ++...+.  ..|.|+.++.++.+|..+... .|.||||||++.+++.+
T Consensus       235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g  282 (852)
T TIGR03346       235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAG  282 (852)
T ss_pred             eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCC
Confidence            6655554  457788888999999988664 58999999999998643

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>KOG0055|consensus

Probab=98.87  E-value=6.5e-09  Score=113.25  Aligned_cols=113  Identities=26%  Similarity=0.335  Sum_probs=87.8

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHh--------------------------------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH--------------------------------------------------  201 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~--------------------------------------------------  201 (390)
                      ++.+++|..+.|+||+||||||+...+++-                                                  
T Consensus       373 sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~  452 (1228)
T KOG0055|consen  373 SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP  452 (1228)
T ss_pred             EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC
Confidence            567899999999999999999999999911                                                  


Q ss_pred             -------------hccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        202 -------------SVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       202 -------------~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                                   .+.+-+....++....++|+      +.|+.+-+.++|....|.||++||+++.+|+.++..+++.+
T Consensus       453 dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL  532 (1228)
T KOG0055|consen  453 DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL  532 (1228)
T ss_pred             cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH
Confidence                         11222222233333333332      45777789999999999999999999999999998888887


Q ss_pred             hcC--CCcEEEeccCHHHHHhcCc
Q psy11689        263 KKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       263 ~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+.  +.|++.++||+.+|..++.
T Consensus       533 d~~~~grTTivVaHRLStIrnaD~  556 (1228)
T KOG0055|consen  533 DKASKGRTTIVVAHRLSTIRNADK  556 (1228)
T ss_pred             HHhhcCCeEEEEeeehhhhhccCE
Confidence            654  6799999999999988765

>KOG0737|consensus

Probab=98.87  E-value=4.9e-10  Score=107.40  Aligned_cols=75  Identities=23%  Similarity=0.326  Sum_probs=68.7

Q ss_pred             eeeeccccCCCcchhhHHHHhhcccccCCcccCCCccceeeCCCCCccCcccccc----ccCCcccchHHHHHHhhcCCc
Q psy11689         12 VLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPTAPQGRETELPF----TKLNEEVELSENVQREEEGIA   87 (390)
Q Consensus        12 ~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~~i~ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~   87 (390)
                      |||.||||||-.+|+|++|             |.++--+|+||+ ...|+.||+.    .++++++|+ .++|++|+|||
T Consensus       232 VlVlgATNRP~DlDeAiiR-------------R~p~rf~V~lP~-~~qR~kILkviLk~e~~e~~vD~-~~iA~~t~GyS  296 (386)
T KOG0737|consen  232 VLVLGATNRPFDLDEAIIR-------------RLPRRFHVGLPD-AEQRRKILKVILKKEKLEDDVDL-DEIAQMTEGYS  296 (386)
T ss_pred             EEEEeCCCCCccHHHHHHH-------------hCcceeeeCCCc-hhhHHHHHHHHhcccccCcccCH-HHHHHhcCCCc
Confidence            9999999999999999999             566666899999 9999999987    568899999 88999999999


Q ss_pred             cccccccccccchh
Q psy11689         88 GENLQRGGGEEGIE  101 (390)
Q Consensus        88 g~~l~~~~~ea~~~  101 (390)
                      |.||.-+|..|+..
T Consensus       297 GSDLkelC~~Aa~~  310 (386)
T KOG0737|consen  297 GSDLKELCRLAALR  310 (386)
T ss_pred             HHHHHHHHHHHhHh
Confidence            99999999999876

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.87  E-value=1.7e-08  Score=107.43  Aligned_cols=99  Identities=26%  Similarity=0.422  Sum_probs=66.3

Q ss_pred             ccccccCCCCCCCccChHHHHH---HHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRA---LMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .|.+.+....++++.|.+....   .+...+..             ....+++|+||||||||++|+++|+..+.+++.+
T Consensus        17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~l   83 (725)
T PRK13341         17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSL   83 (725)
T ss_pred             ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceee
Confidence            4555556666778999888764   34444432             2345799999999999999999999988887776


Q ss_pred             ccccccCcchhhHHHHHHHHHHHH-----HhcCCeEEEEcCCCCCCC
Q psy11689        210 SAAQLYSPYVGEAEQNVTQLFHRA-----RLAAPAILFIDEIERTYN  251 (390)
Q Consensus       210 ~~~~~~~~~~g~~~~~i~~~f~~A-----~~~~p~il~lDEid~~l~  251 (390)
                      ++...       ....++..+..+     ......+|||||++.+-.
T Consensus        84 na~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~  123 (725)
T PRK13341         84 NAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK  123 (725)
T ss_pred             hhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence            65321       112233333333     123467999999998753

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.87  E-value=2.5e-08  Score=102.59  Aligned_cols=118  Identities=14%  Similarity=0.125  Sum_probs=73.4

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch-------
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV-------  206 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~-------  206 (390)
                      |..++....|++|.|.+.+++.|...+...            ..+..+||+||+|+|||++|+++|+.+++.-       
T Consensus         6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC   73 (509)
T PRK14958          6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC   73 (509)
T ss_pred             HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence            445566677779999999999998888541            2345689999999999999999998876421       


Q ss_pred             ------hccccc---ccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        207 ------LAASAA---QLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       207 ------~~i~~~---~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                            ..+...   ++.  ..........++.+...+..    .+..|+||||++.+-.. ..+.....+..
T Consensus        74 g~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-a~naLLk~LEe  145 (509)
T PRK14958         74 NDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-SFNALLKTLEE  145 (509)
T ss_pred             CCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-HHHHHHHHHhc
Confidence                  011000   000  00011122345555554432    23469999999987543 23334444444

>KOG0989|consensus

Probab=98.87  E-value=4.4e-09  Score=98.62  Aligned_cols=104  Identities=23%  Similarity=0.341  Sum_probs=72.4

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch-----
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV-----  206 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~-----  206 (390)
                      .+|.++|....++++.|.+.+.+.+...+..             ....++|+|||||||||+.+.++|+++..+-     
T Consensus        24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~r   90 (346)
T KOG0989|consen   24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCR   90 (346)
T ss_pred             cchHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccc
Confidence            4599999999999999999999999888753             3456799999999999999999999986522     


Q ss_pred             -hccccccccCcchhhHHHHHHHHHHHHHhc---------CC-eEEEEcCCCCCCC
Q psy11689        207 -LAASAAQLYSPYVGEAEQNVTQLFHRARLA---------AP-AILFIDEIERTYN  251 (390)
Q Consensus       207 -~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~---------~p-~il~lDEid~~l~  251 (390)
                       ...+.++..+..+..  .++ +-|+.....         +| .|++|||.|++-.
T Consensus        91 vl~lnaSderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts  143 (346)
T KOG0989|consen   91 VLELNASDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS  143 (346)
T ss_pred             hhhhcccccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhH
Confidence             223333333322211  111 233332222         23 6999999999754

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.86  E-value=7.8e-09  Score=100.49  Aligned_cols=110  Identities=23%  Similarity=0.294  Sum_probs=76.4

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHh------------------------hc-------------------cchh-
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH------------------------SV-------------------YRVL-  207 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~------------------------~~-------------------~~~~-  207 (390)
                      ++.+.+++.+.|.||+||||||+.++||.-                        .|                   +.+. 
T Consensus        25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~  104 (352)
T COG3842          25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV  104 (352)
T ss_pred             eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence            566788999999999999999999999911                        00                   0000 


Q ss_pred             ------------------ccccccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----h
Q psy11689        208 ------------------AASAAQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----K  263 (390)
Q Consensus       208 ------------------~i~~~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~  263 (390)
                                        .+...++...+..+  +.|+.+.++++|...+|.++++||+.+.+|..-.......+    .
T Consensus       105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~  184 (352)
T COG3842         105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR  184 (352)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence                              01111111222222  34667789999999999999999999999987666554433    4


Q ss_pred             cCCCcEEEeccCHHHHHh
Q psy11689        264 KPRIPRTNGGYREQTADT  281 (390)
Q Consensus       264 ~~~~~~i~~~~~~~~i~~  281 (390)
                      ..++|.+.++|.-.-..+
T Consensus       185 ~~giT~i~VTHDqeEAl~  202 (352)
T COG3842         185 ELGITFVYVTHDQEEALA  202 (352)
T ss_pred             hcCCeEEEEECCHHHHhh
Confidence            568999999998655444

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.86  E-value=1.7e-08  Score=86.74  Aligned_cols=107  Identities=17%  Similarity=0.179  Sum_probs=77.0

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhccccc---cccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCC
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASAA---QLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI  246 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~~---~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEi  246 (390)
                      ++.+.+++.+.|.||+|+|||||+++++......  -+.++..   .....+.  ..+..+..+.+|...+|.++++||+
T Consensus        20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP   97 (144)
T cd03221          20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEP   97 (144)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            4567899999999999999999999999764311  0111111   0011111  2344556788999999999999999


Q ss_pred             CCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689        247 ERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       247 d~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~  280 (390)
                      .+-+|........+.+.....+.+..+|....+.
T Consensus        98 ~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~  131 (144)
T cd03221          98 TNHLDLESIEALEEALKEYPGTVILVSHDRYFLD  131 (144)
T ss_pred             ccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence            9999999888887777666667788888865553

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.86  E-value=1.2e-08  Score=107.11  Aligned_cols=118  Identities=16%  Similarity=0.135  Sum_probs=73.1

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch-------
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV-------  206 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~-------  206 (390)
                      |..+|...+|++|.|.+.+++.|...+...            ..+..+||+||+|+|||++++++|+.+++..       
T Consensus         6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PC   73 (830)
T PRK07003          6 LARKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC   73 (830)
T ss_pred             HHHHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCC
Confidence            334555666669999999999998887531            2355689999999999999999998876421       


Q ss_pred             ------hccccc---ccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        207 ------LAASAA---QLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       207 ------~~i~~~---~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                            ..+...   +++  ......+...++.++..+..    ....|+||||+|.+-. ...+.....+..
T Consensus        74 G~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-~A~NALLKtLEE  145 (830)
T PRK07003         74 GVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-HAFNAMLKTLEE  145 (830)
T ss_pred             cccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-HHHHHHHHHHHh
Confidence                  011100   110  00011122345666665542    3457999999998743 333444454444

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.85  E-value=1.1e-08  Score=107.51  Aligned_cols=62  Identities=13%  Similarity=0.082  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      .|+.+-.+++|...+|.|+++||+.+.+|..++....+.+...  ..|.+.++|++.++..+++
T Consensus       489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~  552 (588)
T PRK11174        489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQ  552 (588)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCE
Confidence            4566678899999999999999999999999999888877553  6889999999877776665

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.85  E-value=1.2e-08  Score=95.02  Aligned_cols=58  Identities=14%  Similarity=0.060  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT  281 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~  281 (390)
                      +..+..+++|...+|.|+++||+.+.+|-...-+.++.+..    .+.+.+...|.+...+.
T Consensus       143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~r  204 (258)
T COG1120         143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAAR  204 (258)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence            44456888999999999999999999999988777776644    35888999998755444

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.85  E-value=1.7e-08  Score=84.86  Aligned_cols=73  Identities=41%  Similarity=0.585  Sum_probs=53.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHH---HHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQN---VTQLFHRARLAAPAILFIDEIERT  249 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~---i~~~f~~A~~~~p~il~lDEid~~  249 (390)
                      .+..++++||||+|||++++.++...   +.+++.+++.+............   ....+..+....+.++++||++.+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~   96 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL   96 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence            56789999999999999999999988   77777777766554433222111   123344556678899999999987

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.85  E-value=9.4e-08  Score=90.66  Aligned_cols=188  Identities=15%  Similarity=0.188  Sum_probs=110.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc---------cchhccccccccCc--------------c-h-hhHHHHHHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV---------YRVLAASAAQLYSP--------------Y-V-GEAEQNVTQLFH  231 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~---------~~~~~i~~~~~~~~--------------~-~-g~~~~~i~~~f~  231 (390)
                      ...++||+|++|.|||++++.++....         +|++.+..+..-+.              + . ....+.-.++..
T Consensus        60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~  139 (302)
T PF05621_consen   60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR  139 (302)
T ss_pred             CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence            456799999999999999999985422         35555444321110              1 0 111122334555


Q ss_pred             HHHhcCCeEEEEcCCCCCCChhhHH--HHHHHh----hcCCCcEEEeccCHHHHHhcCchhHHHhHHHhhhhcCC---ch
Q psy11689        232 RARLAAPAILFIDEIERTYNCEYRE--QTADNA----KKPRIPRTNGGYREQTADTANKPRIQRTKREYREQTAD---TA  302 (390)
Q Consensus       232 ~A~~~~p~il~lDEid~~l~~r~~~--~~~~~~----~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l~~l~~---~~  302 (390)
                      ..+..++.+|+|||+..++......  .....+    ..+.++.+..+-....-+-..++++..  ++....+|.   ..
T Consensus       140 llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~  217 (302)
T PF05621_consen  140 LLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEPFELPRWELDE  217 (302)
T ss_pred             HHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCCccCCCCCCCc
Confidence            6677899999999999987543322  222222    224677777776655544445555532  222222331   11


Q ss_pred             h-HHHhhcccccccCCCCCCCCcchh----hhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689        303 H-KTRISRTNRGYREKTADTANKPRI----PRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPR  369 (390)
Q Consensus       303 ~-r~~I~~~n~~~r~~~~~~vdl~~l----a~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~  369 (390)
                      + +..+.+.....-....++.....+    -..|.|..   +++..+++.|+..|++.|...||.+.+.+.-
T Consensus       218 ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i---G~l~~ll~~aA~~AI~sG~E~It~~~l~~~~  286 (302)
T PF05621_consen  218 EFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI---GELSRLLNAAAIAAIRSGEERITREILDKID  286 (302)
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch---HHHHHHHHHHHHHHHhcCCceecHHHHhhCC
Confidence            1 122221111111111222333444    47789986   7899999999999999999999999988754

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.85  E-value=2.6e-08  Score=101.30  Aligned_cols=208  Identities=12%  Similarity=0.092  Sum_probs=110.6

Q ss_pred             ccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch--------
Q psy11689        135 EGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV--------  206 (390)
Q Consensus       135 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~--------  206 (390)
                      ..+|....|+++.|.+.+++.|...+...            ..+..+||+||+|+||||+|+.+|+.+++..        
T Consensus         4 a~KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg   71 (491)
T PRK14964          4 ALKYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG   71 (491)
T ss_pred             hHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence            34556677779999999999888776531            3456899999999999999999998654211        


Q ss_pred             -----hccc---ccccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEe
Q psy11689        207 -----LAAS---AAQLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNG  272 (390)
Q Consensus       207 -----~~i~---~~~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~  272 (390)
                           ..+.   .+++.  ......+...++.+...+..    ....|+||||++.+-. ..-+.....+...--     
T Consensus        72 ~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-~A~NaLLK~LEePp~-----  145 (491)
T PRK14964         72 TCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-SAFNALLKTLEEPAP-----  145 (491)
T ss_pred             ccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-HHHHHHHHHHhCCCC-----
Confidence                 0010   01111  00011123456666666543    3456999999987643 333444445544311     


Q ss_pred             ccCHHHHHhcCchhHHHhHHHhhhh--cCC--chhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHH
Q psy11689        273 GYREQTADTANKPRIQRTKREYREQ--TAD--TAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKP  348 (390)
Q Consensus       273 ~~~~~~i~~t~~~~~~r~~~~~l~~--l~~--~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A  348 (390)
                       |-.+++++++...+..++...-..  +..  ..+....+...........++..+..|++.+.| +  ..|+.+++..+
T Consensus       146 -~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s--lR~alslLdql  221 (491)
T PRK14964        146 -HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S--MRNALFLLEQA  221 (491)
T ss_pred             -CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C--HHHHHHHHHHH
Confidence             111112223333333222211111  111  111111111101111222333445677777765 5  77888888887


Q ss_pred             HHHHHHccccccChhhhhhh
Q psy11689        349 RIQRTKREYREQTADTANKP  368 (390)
Q Consensus       349 ~~~a~~r~~~~i~~~~~~~~  368 (390)
                      ..++.    ..||.+++.+.
T Consensus       222 i~y~~----~~It~e~V~~l  237 (491)
T PRK14964        222 AIYSN----NKISEKSVRDL  237 (491)
T ss_pred             HHhcC----CCCCHHHHHHH
Confidence            76542    36777777653

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.85  E-value=1.5e-08  Score=93.97  Aligned_cols=59  Identities=15%  Similarity=0.044  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT  281 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~  281 (390)
                      .|..+..+++|...+|.+++|||+...+|..+.....+.+   ...+.+.+.++|.+..+..
T Consensus       143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~  204 (254)
T COG1121         143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMA  204 (254)
T ss_pred             HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHh
Confidence            3555678899999999999999999999999887765544   4448899999998766554

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.85  E-value=1.7e-08  Score=109.81  Aligned_cols=101  Identities=23%  Similarity=0.289  Sum_probs=75.3

Q ss_pred             CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cchhcc
Q psy11689        140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRVLAA  209 (390)
Q Consensus       140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~~~i  209 (390)
                      ...++++.|-+.....+.+.+..             ....+++|+||||||||++++.+|....          ..++.+
T Consensus       183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l  249 (852)
T TIGR03345       183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL  249 (852)
T ss_pred             CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence            45556888877765555554432             3456799999999999999999998753          334445


Q ss_pred             cccccc--CcchhhHHHHHHHHHHHHHh-cCCeEEEEcCCCCCCChh
Q psy11689        210 SAAQLY--SPYVGEAEQNVTQLFHRARL-AAPAILFIDEIERTYNCE  253 (390)
Q Consensus       210 ~~~~~~--~~~~g~~~~~i~~~f~~A~~-~~p~il~lDEid~~l~~r  253 (390)
                      +...+.  ..+.|+.+..++.+|..+.. ..+.||||||++.+.+.+
T Consensus       250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g  296 (852)
T TIGR03345       250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAG  296 (852)
T ss_pred             ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCC
Confidence            555444  35778888999999999875 468999999999998754

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.84  E-value=1e-08  Score=99.24  Aligned_cols=110  Identities=20%  Similarity=0.260  Sum_probs=77.0

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHh-------------------------------------------hccchh-
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH-------------------------------------------SVYRVL-  207 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~-------------------------------------------~~~~~~-  207 (390)
                      ++.+..++.+.|.||+|||||||.+.||.-                                           ..++.. 
T Consensus        23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~  102 (338)
T COG3839          23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL  102 (338)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence            566789999999999999999999999911                                           000000 


Q ss_pred             -----------------ccccccccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----c
Q psy11689        208 -----------------AASAAQLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----K  264 (390)
Q Consensus       208 -----------------~i~~~~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~  264 (390)
                                       .+....++..+..  .+.|..+.++.+|...+|++++|||+-+.+|.+........+.    .
T Consensus       103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~  182 (338)
T COG3839         103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER  182 (338)
T ss_pred             CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh
Confidence                             1111222222222  2335566789999999999999999999999887766544443    3


Q ss_pred             CCCcEEEeccCHHHHHh
Q psy11689        265 PRIPRTNGGYREQTADT  281 (390)
Q Consensus       265 ~~~~~i~~~~~~~~i~~  281 (390)
                      .+.|.+.++|...-..+
T Consensus       183 l~~T~IYVTHDq~EAmt  199 (338)
T COG3839         183 LGTTTIYVTHDQVEAMT  199 (338)
T ss_pred             cCCcEEEEcCCHHHHHh
Confidence            57899999998765554

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.84  E-value=1.8e-08  Score=100.30  Aligned_cols=114  Identities=21%  Similarity=0.231  Sum_probs=86.5

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHH----------------------------------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLA----------------------------------------------------  199 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia----------------------------------------------------  199 (390)
                      ++.+.++..+-+.||+|+|||||++.+.                                                    
T Consensus       356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~  435 (580)
T COG4618         356 SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE  435 (580)
T ss_pred             eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccc
Confidence            4567778899999999999999999997                                                    


Q ss_pred             -----------HhhccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        200 -----------AHSVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       200 -----------~~~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                                 +..+.+-..+..++.+...+|+      ..|..+-.+++|....|.+|++||+.+-+|...+......+
T Consensus       436 ~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai  515 (580)
T COG4618         436 EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAI  515 (580)
T ss_pred             cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHH
Confidence                       1112222333334444444433      34666778889999999999999999999998887766554


Q ss_pred             ---hcCCCcEEEeccCHHHHHhcCch
Q psy11689        263 ---KKPRIPRTNGGYREQTADTANKP  285 (390)
Q Consensus       263 ---~~~~~~~i~~~~~~~~i~~t~~~  285 (390)
                         ...+.+.+.++||+..++.++.-
T Consensus       516 ~~~k~rG~~vvviaHRPs~L~~~Dki  541 (580)
T COG4618         516 LAAKARGGTVVVIAHRPSALASVDKI  541 (580)
T ss_pred             HHHHHcCCEEEEEecCHHHHhhccee
Confidence               55689999999999999988863

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.84  E-value=2.9e-08  Score=88.15  Aligned_cols=109  Identities=13%  Similarity=0.033  Sum_probs=74.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh-------------c---------cccccc-cCcchh--hHHHHH
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL-------------A---------ASAAQL-YSPYVG--EAEQNV  226 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~-------------~---------i~~~~~-~~~~~g--~~~~~i  226 (390)
                      ++.+.++..+.|.||+|+|||||+++++...|--.+             +         +..... ......  ...+..
T Consensus        15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q   94 (176)
T cd03238          15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ   94 (176)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence            456789999999999999999999999743331100             0         000000 111111  123455


Q ss_pred             HHHHHHHHhcC--CeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        227 TQLFHRARLAA--PAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       227 ~~~f~~A~~~~--p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      +-.+.+|...+  |.++++||+.+.+|........+.+..   .+.+.+..+|....+.
T Consensus        95 rl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~  153 (176)
T cd03238          95 RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS  153 (176)
T ss_pred             HHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            66788899999  999999999999999988776665543   4678888999865443

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.83  E-value=2.3e-08  Score=87.92  Aligned_cols=109  Identities=23%  Similarity=0.265  Sum_probs=76.7

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc---h-------h-cccc-ccccCc---------ch--hhHHHHHHH
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR---V-------L-AASA-AQLYSP---------YV--GEAEQNVTQ  228 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~---~-------~-~i~~-~~~~~~---------~~--g~~~~~i~~  228 (390)
                      ++.+.++..+.|.||+|+|||||+++++......   +       + ++.. +.+...         +.  -...+..+.
T Consensus        21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv  100 (166)
T cd03223          21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL  100 (166)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHH
Confidence            4567899999999999999999999999663210   0       0 0000 001000         00  112345567


Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~  280 (390)
                      .+++|...+|.++++||+.+.+|........+.+.....+.+..+|+.....
T Consensus       101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~  152 (166)
T cd03223         101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWK  152 (166)
T ss_pred             HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHh
Confidence            8889999999999999999999999888877777666677888888865443

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.82  E-value=6.4e-10  Score=110.97  Aligned_cols=82  Identities=24%  Similarity=0.342  Sum_probs=71.3

Q ss_pred             hhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHH
Q psy11689          8 VCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQR   81 (390)
Q Consensus         8 ~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~   81 (390)
                      -.+++.+|++||+++.+|+||+|              ||||+ .|++|. +.++|.+|+..    +.+.+++++ +.||+
T Consensus       267 ~~~~v~VI~aTn~~~~ld~allR--------------pgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~-~~la~  331 (389)
T PRK03992        267 PRGNVKIIAATNRIDILDPAILR--------------PGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL-EELAE  331 (389)
T ss_pred             CCCCEEEEEecCChhhCCHHHcC--------------CccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH-HHHHH
Confidence            34689999999999999999999              99999 777777 47889999987    557778999 88999


Q ss_pred             hhcCCccccccccccccchhhhc
Q psy11689         82 EEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        82 ~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      .|+||+|+||.++|.+|++.+..
T Consensus       332 ~t~g~sgadl~~l~~eA~~~a~~  354 (389)
T PRK03992        332 LTEGASGADLKAICTEAGMFAIR  354 (389)
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987543

>KOG0726|consensus

Probab=98.81  E-value=8.3e-10  Score=102.58  Aligned_cols=88  Identities=24%  Similarity=0.338  Sum_probs=73.9

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE   77 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~   77 (390)
                      |+..--+.|=||++|||-++.||||.|              |||.| .|+.|. ++..++.|+.|    |.++.+|++ +
T Consensus       317 dGFdsrgDvKvimATnrie~LDPaLiR--------------PGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnl-e  381 (440)
T KOG0726|consen  317 DGFDSRGDVKVIMATNRIETLDPALIR--------------PGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNL-E  381 (440)
T ss_pred             cCccccCCeEEEEecccccccCHhhcC--------------CCccccccccCCCchhhhceeEEEeecccchhccccH-H
Confidence            333444678899999999998888888              99999 666655 48899999998    889999999 9


Q ss_pred             HHHHhhcCCccccccccccccchh-hhcCC
Q psy11689         78 NVQREEEGIAGENLQRGGGEEGIE-LREGG  106 (390)
Q Consensus        78 ~la~~t~G~~g~~l~~~~~ea~~~-~~~~~  106 (390)
                      .+--...-+||+||.+.|.|+++- +++.+
T Consensus       382 ~li~~kddlSGAdIkAictEaGllAlRerR  411 (440)
T KOG0726|consen  382 ELIMTKDDLSGADIKAICTEAGLLALRERR  411 (440)
T ss_pred             HHhhcccccccccHHHHHHHHhHHHHHHHH
Confidence            999999999999999999999986 44433

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.81  E-value=3.3e-08  Score=86.69  Aligned_cols=109  Identities=14%  Similarity=0.096  Sum_probs=76.1

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhccccccc--------cCc---ch--hhHHHHHHHHHHHHHhc
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASAAQL--------YSP---YV--GEAEQNVTQLFHRARLA  236 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~~~~--------~~~---~~--g~~~~~i~~~f~~A~~~  236 (390)
                      ++.+.++..+.|.||+|+|||||+++++......  -+.++...+        ...   +.  =...+..+-.+++|...
T Consensus        20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~   99 (163)
T cd03216          20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR   99 (163)
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence            4667899999999999999999999999653210  011111110        000   11  12234556789999999


Q ss_pred             CCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        237 APAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       237 ~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      +|.++++||+.+.+|........+.+..   ...+.+..+|....+.
T Consensus       100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~  146 (163)
T cd03216         100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF  146 (163)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            9999999999999999888777665533   3577888888865443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.80  E-value=2.7e-08  Score=106.90  Aligned_cols=62  Identities=18%  Similarity=0.210  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .|+.+-.+++|...+|.|+++||+++.+|..++....+.......|.+.++|++.++..+++
T Consensus       621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~  682 (711)
T TIGR00958       621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQ  682 (711)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCE
Confidence            45666789999999999999999999999998888777333456889999999877766654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.79  E-value=3.2e-08  Score=87.97  Aligned_cols=108  Identities=17%  Similarity=0.118  Sum_probs=74.5

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhcccccc--ccCcch-hhHHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASAAQ--LYSPYV-GEAEQNVTQLFHRARLAAPAILFIDEIE  247 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~~~--~~~~~~-g~~~~~i~~~f~~A~~~~p~il~lDEid  247 (390)
                      +.+.++..+.|.||+|+|||||+++++......  -+.++...  ...... -...+..+..+++|....|.++++||+.
T Consensus        20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt   99 (177)
T cd03222          20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS   99 (177)
T ss_pred             cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            356789999999999999999999999753210  01111110  000100 1223455668889999999999999999


Q ss_pred             CCCChhhHHHHHHHhhc---C-CCcEEEeccCHHHHH
Q psy11689        248 RTYNCEYREQTADNAKK---P-RIPRTNGGYREQTAD  280 (390)
Q Consensus       248 ~~l~~r~~~~~~~~~~~---~-~~~~i~~~~~~~~i~  280 (390)
                      +.+|........+.+..   . ..+.+..+|....+.
T Consensus       100 s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~  136 (177)
T cd03222         100 AYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD  136 (177)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence            99999887766655533   2 367888999876555

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.79  E-value=5.1e-08  Score=102.02  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=73.0

Q ss_pred             cccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh--------
Q psy11689        136 GEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL--------  207 (390)
Q Consensus       136 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~--------  207 (390)
                      .++....|++|.|.+.+++.|...+...            +.+..+||+||+|+|||++|+++|+.+++.-.        
T Consensus         8 rKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~   75 (709)
T PRK08691          8 RKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV   75 (709)
T ss_pred             HHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence            3455566669999999999999887641            34567999999999999999999988664311        


Q ss_pred             -----ccccc---ccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        208 -----AASAA---QLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       208 -----~i~~~---~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                           .+...   ++.  ......+...++.++..+..    ....|+||||++.+- ....+.....+..
T Consensus        76 C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-~~A~NALLKtLEE  145 (709)
T PRK08691         76 CQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-KSAFNAMLKTLEE  145 (709)
T ss_pred             cHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-HHHHHHHHHHHHh
Confidence                 11111   110  00111223456666665432    345799999999753 3333444455543

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.79  E-value=2.7e-08  Score=90.66  Aligned_cols=57  Identities=14%  Similarity=0.007  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHHHHHhc
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQTADTA  282 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~~i~~t  282 (390)
                      -+..+++|....|.++|+||+++-+|+-......+.+    ...+.|.+.++|.+..+.++
T Consensus       152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i  212 (263)
T COG1127         152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTI  212 (263)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhh
Confidence            3468899999999999999999999988766554433    33589999999998777664

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.79  E-value=2.1e-08  Score=104.16  Aligned_cols=53  Identities=15%  Similarity=0.096  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccC
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYR  275 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~  275 (390)
                      .|..+-.+++|...+|.|+++||+++.+|..++....+.+...  ..|.+.++||
T Consensus       474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr  528 (529)
T TIGR02868       474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH  528 (529)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            4566678999999999999999999999999999988888654  5788888887

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.79  E-value=2.6e-08  Score=106.90  Aligned_cols=62  Identities=23%  Similarity=0.199  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      .|..+-.+++|...+|.|+++||+.+.+|..++....+.+...  ..|.+.++|++.++..+++
T Consensus       605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~  668 (694)
T TIGR03375       605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDR  668 (694)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCE
Confidence            4566778899999999999999999999999999888877554  5889999999887776665

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.79  E-value=2.8e-08  Score=104.18  Aligned_cols=113  Identities=24%  Similarity=0.293  Sum_probs=83.5

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHh--------------------------------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH--------------------------------------------------  201 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~--------------------------------------------------  201 (390)
                      ++.+++++.+.++||+|+|||||++.+++.                                                  
T Consensus       349 s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~  428 (567)
T COG1132         349 SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP  428 (567)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC
Confidence            556889999999999999999999999911                                                  


Q ss_pred             -------------hccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        202 -------------SVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       202 -------------~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                                   .+++-+....++.+...+|+      +.|..+-.+++|....|.|+++||+.+.+|..++....+.+
T Consensus       429 ~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l  508 (567)
T COG1132         429 DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL  508 (567)
T ss_pred             CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHH
Confidence                         11111111112222223332      34667778999999999999999999999999999888877


Q ss_pred             h--cCCCcEEEeccCHHHHHhcCc
Q psy11689        263 K--KPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       263 ~--~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .  ....|.+.++||+.++..+++
T Consensus       509 ~~l~~~rT~iiIaHRlsti~~aD~  532 (567)
T COG1132         509 KKLLKGRTTLIIAHRLSTIKNADR  532 (567)
T ss_pred             HHHhcCCEEEEEeccHhHHHhCCE
Confidence            4  234588889999988887775

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.78  E-value=5.1e-08  Score=96.68  Aligned_cols=105  Identities=17%  Similarity=0.223  Sum_probs=70.1

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc--
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA--  211 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~--  211 (390)
                      |.+++.+..++++.|.+...+.+...+...            ..+..+|||||||+|||++++++|+....+.....+  
T Consensus         7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~   74 (367)
T PRK14970          7 SARKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED   74 (367)
T ss_pred             HHHHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence            455666677779999999999888887541            245689999999999999999999887542211110  


Q ss_pred             -----ccccCcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCC
Q psy11689        212 -----AQLYSPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYN  251 (390)
Q Consensus       212 -----~~~~~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~  251 (390)
                           -++ ..........++.++..+..    ..+.||++||++.+..
T Consensus        75 ~~~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~  122 (367)
T PRK14970         75 FSFNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS  122 (367)
T ss_pred             CCcceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH
Confidence                 001 11111223456666665543    2457999999997754

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.78  E-value=3.1e-08  Score=103.94  Aligned_cols=62  Identities=15%  Similarity=0.071  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.|+++||+.+.+|..++....+.+...  ..+.+.++|++..+..+++
T Consensus       479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~  542 (574)
T PRK11160        479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDR  542 (574)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCE
Confidence            4666778999999999999999999999999998888777543  5788999999877665554

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=98.78  E-value=1.2e-08  Score=96.52  Aligned_cols=37  Identities=24%  Similarity=0.291  Sum_probs=32.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcccccc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQ  213 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~  213 (390)
                      .+..++|+||||||||++|+++|...+.+++.+++..
T Consensus        20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~   56 (262)
T TIGR02640        20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDA   56 (262)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence            4678999999999999999999999999988876643

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.77  E-value=2.9e-08  Score=85.67  Aligned_cols=48  Identities=15%  Similarity=0.149  Sum_probs=34.1

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCcEEEeccCH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----KPRIPRTNGGYRE  276 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~~i~~~~~~  276 (390)
                      ++.+-...-|.|+++||+.+.+|..+...+...+.    ......++++|..
T Consensus       143 AliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~  194 (223)
T COG4619         143 ALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK  194 (223)
T ss_pred             HHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh
Confidence            44455677899999999999999876665544433    3356667777764

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.77  E-value=3.5e-08  Score=102.50  Aligned_cols=62  Identities=18%  Similarity=0.140  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.|+++||+.+.+|..++....+.+..  ...+.+.++|++..+..+++
T Consensus       462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~  525 (529)
T TIGR02857       462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADR  525 (529)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCE
Confidence            355667888999999999999999999999999988877765  35889999999877766554

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.77  E-value=5.8e-08  Score=101.44  Aligned_cols=59  Identities=19%  Similarity=0.171  Sum_probs=47.2

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      |..++....|+++.|.+.+++.|...+...            ..+..+||+||+|+|||++++++|+.+++
T Consensus         6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951          6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            444556667779999999999998887642            23456899999999999999999988764

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.77  E-value=4.2e-08  Score=102.72  Aligned_cols=115  Identities=14%  Similarity=0.131  Sum_probs=69.9

Q ss_pred             ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh---------
Q psy11689        137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL---------  207 (390)
Q Consensus       137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~---------  207 (390)
                      ++....|++|.|.+.+++.|...+...            .-+..+||+||+|+|||++++++|+.+++...         
T Consensus         9 KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C   76 (647)
T PRK07994          9 KWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC   76 (647)
T ss_pred             HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence            344556669999999999988877541            23455899999999999999999988765311         


Q ss_pred             ----cccc---cccc--CcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        208 ----AASA---AQLY--SPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       208 ----~i~~---~~~~--~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                          .+..   .++.  ..........++.+...+.    .....|+||||++.+- ....+.....+..
T Consensus        77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-~~a~NALLKtLEE  145 (647)
T PRK07994         77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-RHSFNALLKTLEE  145 (647)
T ss_pred             HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-HHHHHHHHHHHHc
Confidence                0000   0110  0000011233454444432    3345799999999764 3334444444444

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.77  E-value=3.5e-08  Score=103.71  Aligned_cols=63  Identities=19%  Similarity=0.149  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.+..+-.+++|...+|.|+++||+++.+|+.++....+.+...  ..+.+.++|++..+..+++
T Consensus       483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~  547 (582)
T PRK11176        483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE  547 (582)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence            34556678889999999999999999999999998888777553  5788999999877666665

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.77  E-value=1.7e-07  Score=90.66  Aligned_cols=60  Identities=22%  Similarity=0.292  Sum_probs=49.7

Q ss_pred             ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ...|.+++.+..++++.|.+++++.+...+...             ...+++|+||||+|||+++++++++..
T Consensus         4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440          4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             cCccchhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            456888888888899999999999988877431             223589999999999999999998863

>PRK06893 DNA replication initiation factor; Validated

Probab=98.77  E-value=6.6e-08  Score=89.63  Aligned_cols=174  Identities=9%  Similarity=0.071  Sum_probs=85.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR  255 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~  255 (390)
                      ..++|+||||||||+|+.++|++..   ....++.....        ......++..  ..++++|+|||++.+.+....
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~--~~~~dlLilDDi~~~~~~~~~  109 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLEN--LEQQDLVCLDDLQAVIGNEEW  109 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhh--cccCCEEEEeChhhhcCChHH
Confidence            4589999999999999999998753   23333333211        0111122322  235689999999998765433


Q ss_pred             HHHH----HHhhcCCCcEEE-eccC-HHHHHhcCchhHHHhHH---HhhhhcCCchhHHHhhcccccccCCCCCCCCcch
Q psy11689        256 EQTA----DNAKKPRIPRTN-GGYR-EQTADTANKPRIQRTKR---EYREQTADTAHKTRISRTNRGYREKTADTANKPR  326 (390)
Q Consensus       256 ~~~~----~~~~~~~~~~i~-~~~~-~~~i~~t~~~~~~r~~~---~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~  326 (390)
                      ....    ......+...+. .++. +..+.. ..+++...+.   ...-..++...+..|+......+....++--+..
T Consensus       110 ~~~l~~l~n~~~~~~~~illits~~~p~~l~~-~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~  188 (229)
T PRK06893        110 ELAIFDLFNRIKEQGKTLLLISADCSPHALSI-KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANF  188 (229)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEeCCCChHHccc-cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            3221    122222223222 2222 222221 1234432222   1111233455565554332333333333334456


Q ss_pred             hhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhh
Q psy11689        327 IPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANK  367 (390)
Q Consensus       327 la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~  367 (390)
                      |+++.+| +  .+.+..++..-...+. ...+.+|...+++
T Consensus       189 L~~~~~~-d--~r~l~~~l~~l~~~~~-~~~~~it~~~v~~  225 (229)
T PRK06893        189 LLKRLDR-D--MHTLFDALDLLDKASL-QAQRKLTIPFVKE  225 (229)
T ss_pred             HHHhccC-C--HHHHHHHHHHHHHHHH-hcCCCCCHHHHHH
Confidence            7776553 3  5667777776533333 3234677665554

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.77  E-value=3.3e-08  Score=106.29  Aligned_cols=63  Identities=17%  Similarity=0.137  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC-CCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP-RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~-~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.|..+-.+++|...+|.|+++||+++.+|..++....+.+... ..|.+.++|++.++..+++
T Consensus       614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~  677 (708)
T TIGR01193       614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDK  677 (708)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCE
Confidence            34666778999999999999999999999999998888777653 4788999999887776665

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.77  E-value=7e-08  Score=84.97  Aligned_cols=63  Identities=11%  Similarity=0.044  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHhcCchh
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADTANKPR  286 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~t~~~~  286 (390)
                      ++.+...++|...+|.+++-||++.-+|+..+.+++..+   ...+.|.+..+|....+.+..++-
T Consensus       142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv  207 (223)
T COG2884         142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV  207 (223)
T ss_pred             HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence            334568889999999999999999999999988876644   556889999999988888876643

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.76  E-value=9.5e-08  Score=94.03  Aligned_cols=106  Identities=14%  Similarity=0.199  Sum_probs=67.6

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh------
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL------  207 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~------  207 (390)
                      |.+++....++++.|.+..++.+.+.+...            ..+..+||+||||+|||++++++|..+..+-.      
T Consensus         4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c   71 (355)
T TIGR02397         4 LARKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC   71 (355)
T ss_pred             HHHHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence            445555666669999999999998877531            23567899999999999999999988643210      


Q ss_pred             -------cc---cccccc--CcchhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCC
Q psy11689        208 -------AA---SAAQLY--SPYVGEAEQNVTQLFHRARLA----APAILFIDEIERTYN  251 (390)
Q Consensus       208 -------~i---~~~~~~--~~~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~  251 (390)
                             .+   ...++.  ..........++.++..+...    ...|++|||++.+-.
T Consensus        72 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~  131 (355)
T TIGR02397        72 NECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK  131 (355)
T ss_pred             CCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH
Confidence                   00   000110  000011223466676665432    346999999998743

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.76  E-value=3.6e-08  Score=103.86  Aligned_cols=62  Identities=16%  Similarity=0.117  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.|+++||+.+.+|..++....+.+...  ..+.+.++|++..+..+++
T Consensus       480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~  543 (592)
T PRK10790        480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADT  543 (592)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence            4566678899999999999999999999999998887777543  5789999999877776665

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.75  E-value=4.3e-08  Score=99.28  Aligned_cols=76  Identities=22%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY  254 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~  254 (390)
                      ...++||||+|+|||+|+++++++.   +..+++++..++...+.......-...|... ...+++|+|||++.+.+...
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~~  219 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKGA  219 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCChh
Confidence            3579999999999999999999875   4666667665544332222111111234333 24678999999999876543

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.75  E-value=8.3e-08  Score=102.55  Aligned_cols=59  Identities=20%  Similarity=0.163  Sum_probs=46.6

Q ss_pred             ccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689        135 EGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR  205 (390)
Q Consensus       135 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~  205 (390)
                      ..++....|++|.|.+.+++.|+.++...            +-+..+||+||||||||++++++|+.+++.
T Consensus         7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949          7 ARKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             HHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            34455666679999999999988877541            234557999999999999999999988753

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.74  E-value=4.1e-08  Score=90.14  Aligned_cols=107  Identities=21%  Similarity=0.194  Sum_probs=75.1

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh--------------------------c----------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS--------------------------V----------------------  203 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~--------------------------~----------------------  203 (390)
                      ++.+..+..+.|.||+||||||+.+.|-+-.                          |                      
T Consensus        21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP  100 (309)
T COG1125          21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP  100 (309)
T ss_pred             eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhh
Confidence            5678899999999999999999999997110                          0                      


Q ss_pred             -----------------cchhccccccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh--
Q psy11689        204 -----------------YRVLAASAAQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA--  262 (390)
Q Consensus       204 -----------------~~~~~i~~~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~--  262 (390)
                                       ...+.++..++..+|..+  +.+..+.-..+|....|.|+++||+.+.+|+-+....++.+  
T Consensus       101 ~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~  180 (309)
T COG1125         101 KLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE  180 (309)
T ss_pred             hhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHH
Confidence                             111222333344444332  22444455668999999999999999999988776665544  


Q ss_pred             --hcCCCcEEEeccCHHH
Q psy11689        263 --KKPRIPRTNGGYREQT  278 (390)
Q Consensus       263 --~~~~~~~i~~~~~~~~  278 (390)
                        ...+.|.+.++|.+.-
T Consensus       181 lq~~l~kTivfVTHDidE  198 (309)
T COG1125         181 LQKELGKTIVFVTHDIDE  198 (309)
T ss_pred             HHHHhCCEEEEEecCHHH
Confidence              3457889999998643

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.74  E-value=4.9e-08  Score=100.23  Aligned_cols=54  Identities=20%  Similarity=0.235  Sum_probs=42.8

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      ....+++|.|.+.+++.|...+...            ..+..+||+|||||||||+++++|+.+.+
T Consensus         9 RP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963          9 RPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            3344449999999999998887641            23455799999999999999999988753

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.74  E-value=7e-08  Score=85.40  Aligned_cols=112  Identities=20%  Similarity=0.232  Sum_probs=76.2

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhcccc---------------------ccccCcch----hhHHH
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASA---------------------AQLYSPYV----GEAEQ  224 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~---------------------~~~~~~~~----g~~~~  224 (390)
                      ++.+.++..+.|.||+|+|||||+++++......  -+.++.                     +.++...+    -...+
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~  101 (173)
T cd03246          22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ  101 (173)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHH
Confidence            4567789999999999999999999999653200  000110                     00110000    12234


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHhcC
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~t~  283 (390)
                      ..+..+.+|...+|.++++||+.+.+|........+.+..   .+.+.+..+|....+..++
T Consensus       102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d  163 (173)
T cd03246         102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASAD  163 (173)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence            5667889999999999999999999999888766655533   3567888888875554333

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.73  E-value=8.4e-08  Score=91.72  Aligned_cols=71  Identities=30%  Similarity=0.388  Sum_probs=51.9

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc--cchhccccccccCcchhhH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV--YRVLAASAAQLYSPYVGEA  222 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~--~~~~~i~~~~~~~~~~g~~  222 (390)
                      .+.|..+..+..--++.+       . +-+.-.++++|+.||||||||+||-++|.++|  .||+.++++++++.-...+
T Consensus        40 G~VGQ~~AReAaGvIv~m-------i-k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKT  111 (450)
T COG1224          40 GLVGQEEAREAAGVIVKM-------I-KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKT  111 (450)
T ss_pred             cccchHHHHHhhhHHHHH-------H-HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHH
Confidence            567776666554444433       1 12335689999999999999999999999987  7888888888876655444


Q ss_pred             H
Q psy11689        223 E  223 (390)
Q Consensus       223 ~  223 (390)
                      +
T Consensus       112 E  112 (450)
T COG1224         112 E  112 (450)
T ss_pred             H
Confidence            4

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.73  E-value=1.1e-07  Score=98.83  Aligned_cols=60  Identities=18%  Similarity=0.259  Sum_probs=48.7

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      .|..++....|++|.|.+.+++.|...+...            +-...+||+||+|+|||++|+++|+.+.+
T Consensus         5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C   64 (624)
T PRK14959          5 SLTARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNC   64 (624)
T ss_pred             hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence            4556667777779999999999998887541            22457999999999999999999988764

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.73  E-value=1e-07  Score=84.25  Aligned_cols=112  Identities=21%  Similarity=0.203  Sum_probs=75.0

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhcccc---------------------ccccCcch----hhHHH
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASA---------------------AQLYSPYV----GEAEQ  224 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~---------------------~~~~~~~~----g~~~~  224 (390)
                      ++.+.++..+.|.||+|+|||||+++++......  -+.++.                     +.++...+    -...+
T Consensus        22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~  101 (171)
T cd03228          22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ  101 (171)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence            4567899999999999999999999999653210  000110                     00111000    11234


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcC
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTAN  283 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~  283 (390)
                      ..+..+.+|...+|.++++||+.+.+|........+.+...  ..+.+..+|....+..++
T Consensus       102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d  162 (171)
T cd03228         102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDAD  162 (171)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCC
Confidence            45567889999999999999999999998877666555332  467788888876554433

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.71  E-value=7.2e-08  Score=90.90  Aligned_cols=116  Identities=18%  Similarity=0.210  Sum_probs=84.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHH-----------------------------hhc-------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAA-----------------------------HSV-------------------  203 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~-----------------------------~~~-------------------  203 (390)
                      ++.++++.-+-+.|.+|+|||||.+++-.                             ..|                   
T Consensus        26 sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA  105 (339)
T COG1135          26 SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA  105 (339)
T ss_pred             eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhh
Confidence            56788999999999999999999999970                             000                   


Q ss_pred             cch-----------------h-ccccccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh
Q psy11689        204 YRV-----------------L-AASAAQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK  263 (390)
Q Consensus       204 ~~~-----------------~-~i~~~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~  263 (390)
                      +|+                 . .+..++....|..+  +.|+.+...++|...+|.|++.||+++.+|+.+...+.+.+.
T Consensus       106 ~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~  185 (339)
T COG1135         106 FPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLK  185 (339)
T ss_pred             hhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHH
Confidence            000                 0 01111222223322  346667788999999999999999999999999988877663


Q ss_pred             ----cCCCcEEEeccCHHHHHh-cCchhH
Q psy11689        264 ----KPRIPRTNGGYREQTADT-ANKPRI  287 (390)
Q Consensus       264 ----~~~~~~i~~~~~~~~i~~-t~~~~~  287 (390)
                          ..++|.+.++|.+.++.. |++--+
T Consensus       186 ~In~~lglTIvlITHEm~Vvk~ic~rVav  214 (339)
T COG1135         186 DINRELGLTIVLITHEMEVVKRICDRVAV  214 (339)
T ss_pred             HHHHHcCCEEEEEechHHHHHHHhhhheE
Confidence                358999999999988765 666433

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.71  E-value=2.4e-09  Score=109.22  Aligned_cols=80  Identities=10%  Similarity=0.057  Sum_probs=66.2

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc--cc----CCcccchHHHHH
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF--TK----LNEEVELSENVQ   80 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~--~~----~~~~v~l~~~la   80 (390)
                      .++|+|+++||+++.+|+|++|              ||||+ .|.+|. +.++|.+|+++  .+    ...++++ +.||
T Consensus       358 ~~~V~vIaTTN~~~~Ld~allR--------------~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl-~~La  422 (489)
T CHL00195        358 KSPVFVVATANNIDLLPLEILR--------------KGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI-KKLS  422 (489)
T ss_pred             CCceEEEEecCChhhCCHHHhC--------------CCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH-HHHH
Confidence            4679999999999999999999              99999 555554 37899999987  22    1247888 8999


Q ss_pred             HhhcCCccccccccccccchhhh
Q psy11689         81 REEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        81 ~~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      +.|+||+|+||..+|.++...+.
T Consensus       423 ~~T~GfSGAdI~~lv~eA~~~A~  445 (489)
T CHL00195        423 KLSNKFSGAEIEQSIIEAMYIAF  445 (489)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998877543

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=7.1e-08  Score=97.90  Aligned_cols=63  Identities=17%  Similarity=0.153  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      ..|..+.+.++|..++++++++||+++.+|.+++..+.+.+...  ..+.+.++||+..+..+++
T Consensus       459 gGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~  523 (559)
T COG4988         459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADR  523 (559)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCE
Confidence            34677789999999999999999999999999999888877553  6888999999887777765

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.71  E-value=3.2e-08  Score=97.89  Aligned_cols=91  Identities=25%  Similarity=0.345  Sum_probs=71.6

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC-cchh-h
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERL-AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS-PYVG-E  221 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~-~~~g-~  221 (390)
                      .|.|.++.++.+..++...++.......+ .-.+|.++||+||||||||++++++|..++.+++.++...++. +|.| .
T Consensus        13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d   92 (441)
T TIGR00390        13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD   92 (441)
T ss_pred             hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence            58899999999988876543332221111 1124689999999999999999999999999999999988874 7888 5


Q ss_pred             HHHHHHHHHHHHHh
Q psy11689        222 AEQNVTQLFHRARL  235 (390)
Q Consensus       222 ~~~~i~~~f~~A~~  235 (390)
                      .++.++.+|..|..
T Consensus        93 vE~i~r~l~e~A~~  106 (441)
T TIGR00390        93 VESMVRDLTDAAVK  106 (441)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77889999998865

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.71  E-value=2.1e-09  Score=108.11  Aligned_cols=81  Identities=20%  Similarity=0.311  Sum_probs=71.4

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      ..++.+|++||+++.+|+||+|              ||||+ .|++|. +.++|++|+.+    +.+.+++++ +.++..
T Consensus       320 ~~~V~VI~ATNr~d~LDpaLlR--------------pGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl-~~la~~  384 (438)
T PTZ00361        320 RGDVKVIMATNRIESLDPALIR--------------PGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL-EEFIMA  384 (438)
T ss_pred             cCCeEEEEecCChHHhhHHhcc--------------CCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH-HHHHHh
Confidence            3578999999999999999998              99999 778777 47899999987    567889999 899999


Q ss_pred             hcCCccccccccccccchhhhc
Q psy11689         83 EEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      |+||+|+||..+|.+|++.+..
T Consensus       385 t~g~sgAdI~~i~~eA~~~Alr  406 (438)
T PTZ00361        385 KDELSGADIKAICTEAGLLALR  406 (438)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987543

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.71  E-value=9.6e-08  Score=82.79  Aligned_cols=62  Identities=18%  Similarity=0.115  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCch
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANKP  285 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~~  285 (390)
                      +..+.++++|....|.|+|-||++.-+|..+...+.+.+..    .+.+.+.++|.+...+.|+|.
T Consensus       151 EQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~  216 (228)
T COG4181         151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQ  216 (228)
T ss_pred             HHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhe
Confidence            34467889999999999999999999999888777665533    378889999999888877763

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.70  E-value=1.2e-07  Score=84.31  Aligned_cols=110  Identities=14%  Similarity=0.094  Sum_probs=74.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhccc--------------------cccccCcch-------hhH
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAAS--------------------AAQLYSPYV-------GEA  222 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~--------------------~~~~~~~~~-------g~~  222 (390)
                      ++.+.+++.+.|.||+|+|||||+++++......  -+.++                    .+.++...+       -..
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~  101 (178)
T cd03247          22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG  101 (178)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence            5667899999999999999999999999553200  00000                    001111000       012


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHh
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADT  281 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~  281 (390)
                      .+..+-.+++|...+|.++++||+.+.+|........+.+..  ...+.+..+|....+..
T Consensus       102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  162 (178)
T cd03247         102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH  162 (178)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence            345567889999999999999999999999888776665543  25667788887655443

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.70  E-value=1e-07  Score=102.73  Aligned_cols=59  Identities=25%  Similarity=0.261  Sum_probs=47.1

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      |..+|....|++|.|.+.+++.|...+...            +.+..+||+||+|||||++++++|+.+.+
T Consensus         5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C   63 (824)
T PRK07764          5 LYRRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNC   63 (824)
T ss_pred             HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence            445566667779999999999988887531            23445899999999999999999988764

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.70  E-value=2.5e-07  Score=85.04  Aligned_cols=82  Identities=16%  Similarity=0.240  Sum_probs=54.9

Q ss_pred             ChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhhHHH
Q psy11689        148 GLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGEAEQ  224 (390)
Q Consensus       148 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~~~~  224 (390)
                      +.....+.++..+.             ...+..++|+||+|||||+|+++++.++.   .+++++++.++....      
T Consensus        21 ~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------   81 (226)
T TIGR03420        21 GNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------   81 (226)
T ss_pred             CcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH------
Confidence            44556666665542             13577899999999999999999998764   556667766543211      


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                        ..++..  ...+.+|+|||++.+-..
T Consensus        82 --~~~~~~--~~~~~lLvIDdi~~l~~~  105 (226)
T TIGR03420        82 --PEVLEG--LEQADLVCLDDVEAIAGQ  105 (226)
T ss_pred             --HHHHhh--cccCCEEEEeChhhhcCC
Confidence              122222  234569999999987654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=98.70  E-value=2.9e-09  Score=112.64  Aligned_cols=81  Identities=19%  Similarity=0.253  Sum_probs=70.1

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      ...|+++++||+++.+|+|++|              ||||+ .|.+|. +.++|.+|+..    .++.+++++ ..+|+.
T Consensus       288 ~~~vivIaaTN~p~~lD~Al~R--------------pgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~-~~la~~  352 (644)
T PRK10733        288 NEGIIVIAATNRPDVLDPALLR--------------PGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA-AIIARG  352 (644)
T ss_pred             CCCeeEEEecCChhhcCHHHhC--------------CcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH-HHHHhh
Confidence            3468999999999999999999              99999 666666 36789999886    457788999 889999


Q ss_pred             hcCCccccccccccccchhhhc
Q psy11689         83 EEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      |.||+|+||..+|.+++..+..
T Consensus       353 t~G~sgadl~~l~~eAa~~a~r  374 (644)
T PRK10733        353 TPGFSGADLANLVNEAALFAAR  374 (644)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987554

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.70  E-value=2.5e-08  Score=98.64  Aligned_cols=95  Identities=23%  Similarity=0.306  Sum_probs=73.8

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCC-CCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC-cchh-h
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAI-PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS-PYVG-E  221 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~-~~~g-~  221 (390)
                      .|.|.+.+++.+..++...++.......... ..+.++||+||||||||+||+++|..++.+|+.+++..++. +|.| .
T Consensus        16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d   95 (443)
T PRK05201         16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD   95 (443)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence            5899999999998887543222211111110 12588999999999999999999999999999999998885 7988 5


Q ss_pred             HHHHHHHHHHHHHhcCCe
Q psy11689        222 AEQNVTQLFHRARLAAPA  239 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~  239 (390)
                      .+..++.+|..|....|+
T Consensus        96 ~e~~ir~L~~~A~~~~~~  113 (443)
T PRK05201         96 VESIIRDLVEIAVKMVRE  113 (443)
T ss_pred             HHHHHHHHHHHHHHHhHH
Confidence            678899999999777665

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.70  E-value=2.5e-07  Score=95.79  Aligned_cols=115  Identities=17%  Similarity=0.167  Sum_probs=71.2

Q ss_pred             ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh---------
Q psy11689        137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL---------  207 (390)
Q Consensus       137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~---------  207 (390)
                      ++....|+++.|.+.+++.+...+...            ..+..+||+||+|+|||++|+++|+.+++...         
T Consensus         9 k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C   76 (527)
T PRK14969          9 KWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC   76 (527)
T ss_pred             HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence            344455569999999999988887541            23456899999999999999999988765210         


Q ss_pred             ----ccccc---ccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        208 ----AASAA---QLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       208 ----~i~~~---~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                          .+...   ++.  ..........++.+...+..    ....|+||||+|.+-. ...+.....+..
T Consensus        77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-~a~naLLK~LEe  145 (527)
T PRK14969         77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-SAFNAMLKTLEE  145 (527)
T ss_pred             HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-HHHHHHHHHHhC
Confidence                00000   000  00001123446666666543    2346999999997643 333444455544

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.70  E-value=7e-08  Score=101.60  Aligned_cols=62  Identities=19%  Similarity=0.180  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.|+++||+++.+|..++....+.+...  ..+.+.++|++..+..+|+
T Consensus       475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~  538 (588)
T PRK13657        475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADR  538 (588)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCE
Confidence            4566678899999999999999999999999998887777553  5788999999876665554

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.69  E-value=1.1e-07  Score=96.44  Aligned_cols=187  Identities=12%  Similarity=0.070  Sum_probs=101.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHH---HHHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQ---NVTQLFHRARLAAPAILFIDEIERT  249 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~---~i~~~f~~A~~~~p~il~lDEid~~  249 (390)
                      ...++|||++|+|||+|++++++++     +..++++++.++...+......   .+.. |.. ....+++|+|||++.+
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~-~~~~~dvLiIDDiq~l  218 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKN-EICQNDVLIIDDVQFL  218 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHH-HhccCCEEEEeccccc
Confidence            3569999999999999999999854     3566677776665554433221   1211 211 2346789999999988


Q ss_pred             CChhhHHHHHHH----hhcCCCcEEEeccCHHHHHhcCchhHHHhHH-Hhh--hhcCCchhHHHhhcccccccCC--CCC
Q psy11689        250 YNCEYREQTADN----AKKPRIPRTNGGYREQTADTANKPRIQRTKR-EYR--EQTADTAHKTRISRTNRGYREK--TAD  320 (390)
Q Consensus       250 l~~r~~~~~~~~----~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~-~~l--~~l~~~~~r~~I~~~n~~~r~~--~~~  320 (390)
                      .+.....+....    ....+...+..+++.-.....-.+++...+. .+.  -..++...+..|+......+..  ..+
T Consensus       219 ~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~  298 (450)
T PRK14087        219 SYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVT  298 (450)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCC
Confidence            765443333222    2223334454444432111111223321111 011  1233456666664222211111  122


Q ss_pred             CCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccc-cccChhhhhhhH
Q psy11689        321 TANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREY-REQTADTANKPR  369 (390)
Q Consensus       321 ~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~-~~i~~~~~~~~~  369 (390)
                      +--+..||....| +  ...|..++.+....+..... ..+|.+.+.++.
T Consensus       299 ~evl~~Ia~~~~g-d--~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l  345 (450)
T PRK14087        299 EEAINFISNYYSD-D--VRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLF  345 (450)
T ss_pred             HHHHHHHHHccCC-C--HHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHH
Confidence            2234456666665 3  78899999988866655532 568877776655

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=3e-08  Score=102.25  Aligned_cols=224  Identities=17%  Similarity=0.168  Sum_probs=131.7

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc---------
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY---------  215 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~---------  215 (390)
                      |=-|++.+|+.+.+.+...       +...--.+.-++|+||||+|||+|++.||..++-.|+.++.....         
T Consensus       324 dHYGLekVKeRIlEyLAV~-------~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR  396 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQ-------KLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR  396 (782)
T ss_pred             cccCchhHHHHHHHHHHHH-------HHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence            3478999999998887542       111223567899999999999999999999999999988765433         


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc-------CCCcE-----EEeccCHHHHHhcC
Q psy11689        216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK-------PRIPR-----TNGGYREQTADTAN  283 (390)
Q Consensus       216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~-------~~~~~-----i~~~~~~~~i~~t~  283 (390)
                      ..|+|+....+-+.+..|...+| +++|||+|.+... +..+...++..       .....     ...-..+..++|+|
T Consensus       397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTAN  474 (782)
T COG0466         397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATAN  474 (782)
T ss_pred             ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecC
Confidence            45788887788888889988886 5789999998743 22222222211       11111     11112344577777


Q ss_pred             chh-HHHhHHHhhhh--cCC--chhHHHhhcccccccCC-----CCCCCCcch-----hh---hcCCCCCCCcHHHHHHH
Q psy11689        284 KPR-IQRTKREYREQ--TAD--TAHKTRISRTNRGYREK-----TADTANKPR-----IP---RTNRGYREYSAQNANTA  345 (390)
Q Consensus       284 ~~~-~~r~~~~~l~~--l~~--~~~r~~I~~~n~~~r~~-----~~~~vdl~~-----la---~~t~gfs~~gaDL~~l~  345 (390)
                      .-+ +-++++.....  +.+  ..++..|..-....+..     ...++.+.+     |.   .+..|.-..-..|..+|
T Consensus       475 sl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~  554 (782)
T COG0466         475 SLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKIC  554 (782)
T ss_pred             ccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHH
Confidence            765 55555543332  333  34445553222111111     112233322     22   23345543345677888


Q ss_pred             HHHHHHHHHcccc---ccChhhhhhhHHHHhcCcc
Q psy11689        346 NKPRIQRTKREYR---EQTADTANKPRIQRIGNLS  377 (390)
Q Consensus       346 ~~A~~~a~~r~~~---~i~~~~~~~~~~~~~~~~~  377 (390)
                      ++++..-......   .++.+++.+-.=...|...
T Consensus       555 RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~~  589 (782)
T COG0466         555 RKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFRYG  589 (782)
T ss_pred             HHHHHHHHhcCcccceeeCHHHHHHHhCCcccCcc
Confidence            8887775554333   4666677665544444443

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.69  E-value=7.2e-08  Score=101.06  Aligned_cols=63  Identities=19%  Similarity=0.152  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.+..+-.+++|...+|.|+++||+++.+|..+.....+.+...  ..+.+.++|+...+..+++
T Consensus       472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~  536 (571)
T TIGR02203       472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADR  536 (571)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCE
Confidence            34566678899999999999999999999999998887777553  5788999999876666654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.69  E-value=1.9e-07  Score=96.73  Aligned_cols=60  Identities=13%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..|..++.+..|+++.|.+.+++.+...+...            ..+..+||+||+|+|||++|+++|..+.
T Consensus         4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~   63 (605)
T PRK05896          4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAIN   63 (605)
T ss_pred             hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            35777777888889999999999888876431            2356799999999999999999998764

>KOG0056|consensus

Probab=98.69  E-value=3.2e-08  Score=97.92  Aligned_cols=112  Identities=20%  Similarity=0.256  Sum_probs=80.1

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHh--------------------------------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH--------------------------------------------------  201 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~--------------------------------------------------  201 (390)
                      ++.+.+|..+.|+||+|.||||+.+.+-+-                                                  
T Consensus       558 sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~  637 (790)
T KOG0056|consen  558 SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP  637 (790)
T ss_pred             eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCC
Confidence            556789999999999999999999998711                                                  


Q ss_pred             -------------hccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        202 -------------SVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       202 -------------~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                                   .+++--.+..++.....+|+      +.++.+.+.+++....|+||++||+.+.+|..++..++..+
T Consensus       638 ~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL  717 (790)
T KOG0056|consen  638 SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL  717 (790)
T ss_pred             CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence                         11111112222222222332      22344567888889999999999999999999888887777


Q ss_pred             hcC--CCcEEEeccCHHHHHhcC
Q psy11689        263 KKP--RIPRTNGGYREQTADTAN  283 (390)
Q Consensus       263 ~~~--~~~~i~~~~~~~~i~~t~  283 (390)
                      .+.  ..|.+.++||+.++-.++
T Consensus       718 ~rlca~RTtIVvAHRLSTivnAD  740 (790)
T KOG0056|consen  718 ARLCANRTTIVVAHRLSTIVNAD  740 (790)
T ss_pred             HHHhcCCceEEEeeeehheeccc
Confidence            654  678899999987765544

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.68  E-value=4e-07  Score=84.70  Aligned_cols=178  Identities=13%  Similarity=0.044  Sum_probs=85.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      .+..++|+||||||||+|+.+++++..   ..+.++.......        ....+++...  +..+|+|||++.+-+..
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~--~~dlliiDdi~~~~~~~  113 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGME--QLSLVCIDNIECIAGDE  113 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhh--hCCEEEEeChhhhcCCH
Confidence            345799999999999999999998754   2233333322111        1111222211  23699999999987654


Q ss_pred             hHHHHH-H---HhhcCC-CcEEEeccCHHHHHhcCchhHHHhH---HHhhhhcCCchhHHHhhcccccccCCCCCCCCcc
Q psy11689        254 YREQTA-D---NAKKPR-IPRTNGGYREQTADTANKPRIQRTK---REYREQTADTAHKTRISRTNRGYREKTADTANKP  325 (390)
Q Consensus       254 ~~~~~~-~---~~~~~~-~~~i~~~~~~~~i~~t~~~~~~r~~---~~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~  325 (390)
                      ..+... .   .....+ ...+..++....-...-.+++...+   ....-..++.+.+..++......+....++--+.
T Consensus       114 ~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~  193 (235)
T PRK08084        114 LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGR  193 (235)
T ss_pred             HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            332222 2   212222 2334434322111111224443222   1111112234455555322112222223333345


Q ss_pred             hhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhh
Q psy11689        326 RIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKP  368 (390)
Q Consensus       326 ~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~  368 (390)
                      .|+++.+| +  .+.+..++.+-...+ ....+.||...+.+.
T Consensus       194 ~L~~~~~~-d--~r~l~~~l~~l~~~~-l~~~~~it~~~~k~~  232 (235)
T PRK08084        194 FLLKRLDR-E--MRTLFMTLDQLDRAS-ITAQRKLTIPFVKEI  232 (235)
T ss_pred             HHHHhhcC-C--HHHHHHHHHHHHHHH-HhcCCCCCHHHHHHH
Confidence            56666554 3  677888887753233 233345776655543

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.68  E-value=1.2e-07  Score=86.82  Aligned_cols=53  Identities=15%  Similarity=0.133  Sum_probs=41.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+.
T Consensus       149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  205 (218)
T cd03255         149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE  205 (218)
T ss_pred             HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence            3566788889999999999999999888777665543    3578888899865444

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.68  E-value=6e-08  Score=89.92  Aligned_cols=54  Identities=15%  Similarity=-0.007  Sum_probs=44.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~  281 (390)
                      .+++.+...+|.++++||+.+.+|+.........+..+    +.+.+..+|++..+..
T Consensus       147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~  204 (235)
T COG1122         147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE  204 (235)
T ss_pred             HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh
Confidence            36667888999999999999999999988887766553    4788999998766655

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.67  E-value=1.2e-07  Score=92.90  Aligned_cols=60  Identities=12%  Similarity=0.051  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+..+++|...+|.++++||+.+.+|+.+.....+.+..    .+.+.+.++|.+..+.. |++
T Consensus       146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~  210 (343)
T TIGR02314       146 KQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDC  210 (343)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            3445777889999999999999999999998877765544    36889999999887754 554

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.67  E-value=1.3e-07  Score=94.28  Aligned_cols=117  Identities=16%  Similarity=0.143  Sum_probs=74.5

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh---------------c
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL---------------A  208 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~---------------~  208 (390)
                      ++|+|.+.+++.|...+.....++   ..++...+..+||+||||+|||++|+++|..+.+...               .
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~   81 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA   81 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence            399999999999999997654432   2233345778999999999999999999987644210               0


Q ss_pred             cccccccCcc---hhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        209 ASAAQLYSPY---VGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       209 i~~~~~~~~~---~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                      -..+++..-.   .......++.++..+...    ...|+||||+|.+-.. ..+.....+..
T Consensus        82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-aanaLLk~LEe  143 (394)
T PRK07940         82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-AANALLKAVEE  143 (394)
T ss_pred             CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-HHHHHHHHhhc
Confidence            0111111000   011224477777776543    3469999999998543 33444454444

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.67  E-value=1.9e-07  Score=96.28  Aligned_cols=118  Identities=14%  Similarity=0.151  Sum_probs=71.0

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch-------
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV-------  206 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~-------  206 (390)
                      |..++....|+++.|.+.+++.+...+...            ..+..+||+||+|+|||++|+++|+.+.+..       
T Consensus         6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC   73 (546)
T PRK14957          6 LARKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC   73 (546)
T ss_pred             HHHHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence            444555666779999999999988877541            2345589999999999999999998765310       


Q ss_pred             ------hcccc---ccccC--cchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        207 ------LAASA---AQLYS--PYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       207 ------~~i~~---~~~~~--~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                            ..+..   .++..  .....+...++.+...+.    .....|+||||++.+-. ...+.....+..
T Consensus        74 g~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-~a~naLLK~LEe  145 (546)
T PRK14957         74 NKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-QSFNALLKTLEE  145 (546)
T ss_pred             cccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-HHHHHHHHHHhc
Confidence                  01110   01100  000011223444444433    23457999999998643 333444455544

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.67  E-value=1.6e-07  Score=86.01  Aligned_cols=53  Identities=13%  Similarity=0.075  Sum_probs=41.9

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+.++|.+..+.
T Consensus       147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~  202 (216)
T TIGR00960       147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVE  202 (216)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4666788889999999999999999888777665543   3577888999876554

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.67  E-value=3e-07  Score=92.10  Aligned_cols=54  Identities=13%  Similarity=0.198  Sum_probs=43.3

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      ....+++|.|.+.+++.|...+...            ..+..+||+||||+|||++|+++|+.+.+
T Consensus        11 RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c   64 (397)
T PRK14955         11 RPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (397)
T ss_pred             CCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3444449999999999888877531            24566999999999999999999988865

>KOG0057|consensus

Probab=98.67  E-value=8.7e-08  Score=96.27  Aligned_cols=113  Identities=20%  Similarity=0.243  Sum_probs=83.3

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHh--------------------------------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH--------------------------------------------------  201 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~--------------------------------------------------  201 (390)
                      ++.++.|..|.+.|++||||||+.+++-+-                                                  
T Consensus       372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s  451 (591)
T KOG0057|consen  372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS  451 (591)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC
Confidence            567889999999999999999999999811                                                  


Q ss_pred             ------------hccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh
Q psy11689        202 ------------SVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK  263 (390)
Q Consensus       202 ------------~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~  263 (390)
                                  .+.+-.....++.....+|+      +.++.+..+.+|....|.|+++||+++-+|..++....+.+.
T Consensus       452 as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~  531 (591)
T KOG0057|consen  452 ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIM  531 (591)
T ss_pred             cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHH
Confidence                        11111111111111112232      235566788999999999999999999999999999988886


Q ss_pred             c--CCCcEEEeccCHHHHHhcCc
Q psy11689        264 K--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       264 ~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .  ...|.+.+.|+..++..++.
T Consensus       532 ~~~~~rTvI~IvH~l~ll~~~Dk  554 (591)
T KOG0057|consen  532 DVMSGRTVIMIVHRLDLLKDFDK  554 (591)
T ss_pred             HhcCCCeEEEEEecchhHhcCCE
Confidence            6  47889999999877776665

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.67  E-value=1.1e-07  Score=99.74  Aligned_cols=61  Identities=18%  Similarity=0.131  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +..+-.+++|...+|.|+++||+.+.+|..+.....+.+..  ...+.+..+|++..+..+++
T Consensus       456 q~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~  518 (569)
T PRK10789        456 QKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASE  518 (569)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCE
Confidence            45566888999999999999999999999998888777654  46788999999766655544

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.67  E-value=1.6e-07  Score=83.15  Aligned_cols=109  Identities=19%  Similarity=0.183  Sum_probs=74.7

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc--chhcccc--------------------ccccCc-ch-----hhHH
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAASA--------------------AQLYSP-YV-----GEAE  223 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~~--------------------~~~~~~-~~-----g~~~  223 (390)
                      ++.+.++..+.|.||+|+|||||+++++.....  --+.++.                    +.++.. .+     -...
T Consensus        20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G   99 (173)
T cd03230          20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG   99 (173)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence            456788999999999999999999999965310  0000000                    011111 00     0123


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      +..+..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|....+.
T Consensus       100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~  159 (173)
T cd03230         100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE  159 (173)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence            44566889999999999999999999999888777665543   2467788888875544

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.67  E-value=9.9e-08  Score=102.39  Aligned_cols=62  Identities=19%  Similarity=0.162  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.|+++||+.+.+|..++....+.+...  ..+.+.++|++..+..+++
T Consensus       597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~  660 (694)
T TIGR01846       597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDR  660 (694)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCE
Confidence            4556678889999999999999999999999998888777553  5788999999877766554

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>KOG0651|consensus

Probab=98.66  E-value=1.1e-08  Score=95.92  Aligned_cols=84  Identities=24%  Similarity=0.306  Sum_probs=71.6

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE   77 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~   77 (390)
                      |...-.|-|-+|.+|||||+.|+||+|              |||++ .+++|. .+++|..|++|    ....+..+. +
T Consensus       264 dgfd~l~rVk~ImatNrpdtLdpaLlR--------------pGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~-e  328 (388)
T KOG0651|consen  264 DGFDTLHRVKTIMATNRPDTLDPALLR--------------PGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDD-E  328 (388)
T ss_pred             ccchhcccccEEEecCCccccchhhcC--------------CccccceeccCCcchhhceeeEeeccccccccccccH-H
Confidence            334456778899999999999999999              99999 666666 58999999999    445678888 9


Q ss_pred             HHHHhhcCCccccccccccccchhh
Q psy11689         78 NVQREEEGIAGENLQRGGGEEGIEL  102 (390)
Q Consensus        78 ~la~~t~G~~g~~l~~~~~ea~~~~  102 (390)
                      .+.+..+||.|++++..|+|+++..
T Consensus       329 aivK~~d~f~gad~rn~~tEag~Fa  353 (388)
T KOG0651|consen  329 AILKLVDGFNGADLRNVCTEAGMFA  353 (388)
T ss_pred             HHHHHHhccChHHHhhhcccccccc
Confidence            9999999999999999999999753

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.66  E-value=2.4e-07  Score=96.52  Aligned_cols=104  Identities=13%  Similarity=0.176  Sum_probs=67.6

Q ss_pred             cccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch---------
Q psy11689        136 GEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV---------  206 (390)
Q Consensus       136 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~---------  206 (390)
                      .++....|+++.|.+.+.+.+...+...            ..+..+||+||+|||||++|+.+|+...+.-         
T Consensus         8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~   75 (559)
T PRK05563          8 RKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE   75 (559)
T ss_pred             HHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            3445566669999999999998887641            2456689999999999999999998765321         


Q ss_pred             ----hccc---ccccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCC
Q psy11689        207 ----LAAS---AAQLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYN  251 (390)
Q Consensus       207 ----~~i~---~~~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~  251 (390)
                          ..+.   ..++.  ....+.+...++.+...+..    ....|+||||++.+-.
T Consensus        76 C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~  133 (559)
T PRK05563         76 CEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST  133 (559)
T ss_pred             cHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH
Confidence                0000   01110  01111233456666666543    3356999999998743

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.66  E-value=1.9e-07  Score=84.83  Aligned_cols=54  Identities=11%  Similarity=0.016  Sum_probs=42.3

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+.
T Consensus       134 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~  190 (205)
T cd03226         134 RLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA  190 (205)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            34667888889999999999999999888777665533   3677888999876554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.65  E-value=5.2e-09  Score=107.80  Aligned_cols=79  Identities=25%  Similarity=0.326  Sum_probs=68.1

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE   83 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t   83 (390)
                      ++|+||++||+++.+|+||+|              ||||+ .|++|. +.++|.+|++.    .++.+++++ +.+|+.|
T Consensus       192 ~~v~vI~aTn~~~~ld~al~r--------------~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l-~~la~~t  256 (495)
T TIGR01241       192 TGVIVIAATNRPDVLDPALLR--------------PGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDL-KAVARRT  256 (495)
T ss_pred             CCeEEEEecCChhhcCHHHhc--------------CCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhH-HHHHHhC
Confidence            568999999999999999999              99999 777766 46788998886    345678899 8999999


Q ss_pred             cCCccccccccccccchhhh
Q psy11689         84 EGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        84 ~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .||+|+||..+|.+++..+.
T Consensus       257 ~G~sgadl~~l~~eA~~~a~  276 (495)
T TIGR01241       257 PGFSGADLANLLNEAALLAA  276 (495)
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999998877543

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.65  E-value=1.7e-07  Score=87.04  Aligned_cols=56  Identities=16%  Similarity=0.153  Sum_probs=43.0

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcC
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~  283 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+..++
T Consensus       141 l~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d  200 (236)
T TIGR03864       141 VEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADD  200 (236)
T ss_pred             HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCC
Confidence            4667888899999999999999999988877665543    3567888888875554333

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.65  E-value=1.2e-07  Score=99.68  Aligned_cols=62  Identities=18%  Similarity=0.132  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.++++||+.+.+|..+.....+.+..  ...+.+.++|+...+..+++
T Consensus       475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~  538 (585)
T TIGR01192       475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADL  538 (585)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCE
Confidence            355566888999999999999999999999998888776644  36788999999877665554

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.65  E-value=1.5e-07  Score=81.75  Aligned_cols=110  Identities=20%  Similarity=0.219  Sum_probs=74.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhccccccccC----------cch--hhHHHHHHHHHHHHHhcC
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASAAQLYS----------PYV--GEAEQNVTQLFHRARLAA  237 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~~~~~~----------~~~--g~~~~~i~~~f~~A~~~~  237 (390)
                      ++.+.++..+.|.||+|+|||||+++++......  -+.++......          .+.  -...+..+..+.++...+
T Consensus        19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~   98 (157)
T cd00267          19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN   98 (157)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence            4567889999999999999999999999764321  11222211100          000  112234455688888899


Q ss_pred             CeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        238 PAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       238 p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      |.++++||+.+-+|..+.....+.+..   ...+.+..+|....+..
T Consensus        99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~  145 (157)
T cd00267          99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL  145 (157)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            999999999999999887766555432   24677888888655544

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0738|consensus

Probab=98.65  E-value=5.5e-09  Score=100.66  Aligned_cols=85  Identities=22%  Similarity=0.323  Sum_probs=70.4

Q ss_pred             cchhhh-hhe---eeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcc
Q psy11689          3 VDLVRV-CNT---VLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEE   72 (390)
Q Consensus         3 ~~~~~~-~n~---~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~   72 (390)
                      +|++.- .||   |.|+++||-|--||+|++|                ||+ .|.||. +.++|...|++    ..++++
T Consensus       340 mDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR----------------RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~  403 (491)
T KOG0738|consen  340 MDGVQGTLENSKVVMVLAATNFPWDIDEALRR----------------RLEKRIYIPLPDAEARSALIKILLRSVELDDP  403 (491)
T ss_pred             hhccccccccceeEEEEeccCCCcchHHHHHH----------------HHhhheeeeCCCHHHHHHHHHHhhccccCCCC
Confidence            355544 456   8999999999999999999                999 444444 27788888887    558889


Q ss_pred             cchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689         73 VELSENVQREEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        73 v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      +++ +.||+.++||+|+||..+|+++++....
T Consensus       404 ~~~-~~lae~~eGySGaDI~nvCreAsm~~mR  434 (491)
T KOG0738|consen  404 VNL-EDLAERSEGYSGADITNVCREASMMAMR  434 (491)
T ss_pred             ccH-HHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            999 9999999999999999999999997443

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.65  E-value=2.1e-07  Score=82.89  Aligned_cols=108  Identities=19%  Similarity=0.159  Sum_probs=73.7

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhcccc---------------------------ccccCcch--h
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASA---------------------------AQLYSPYV--G  220 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~---------------------------~~~~~~~~--g  220 (390)
                      ++.+.++..+.|.||+|+|||||+++++......  -+.++.                           .+......  -
T Consensus        19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L   98 (180)
T cd03214          19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL   98 (180)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence            4567899999999999999999999999653100  000110                           01111111  0


Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHH
Q psy11689        221 EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTA  279 (390)
Q Consensus       221 ~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i  279 (390)
                      ...+..+..+.+|...+|.++++||+.+.+|........+.+...    ..+.+..+|....+
T Consensus        99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~  161 (180)
T cd03214          99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA  161 (180)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            123445567889999999999999999999998877766655332    56778888886544

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.64  E-value=1.3e-07  Score=85.89  Aligned_cols=57  Identities=7%  Similarity=-0.062  Sum_probs=45.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHhcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~t~~  284 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..   ...+.+..+|....+..++.
T Consensus       138 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~  197 (204)
T PRK13538        138 VALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV  197 (204)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence            4566788889999999999999999888777665543   35788889998877766655

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=98.64  E-value=5.4e-08  Score=104.81  Aligned_cols=100  Identities=21%  Similarity=0.337  Sum_probs=71.9

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc---------
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY---------  215 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~---------  215 (390)
                      +..|++.+|+.+.+++.....       ..-..+..++|+||||+|||++++.+|...+.+++.++.....         
T Consensus       323 ~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~  395 (784)
T PRK10787        323 DHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR  395 (784)
T ss_pred             hccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence            478999999999887764211       1123567899999999999999999999999888776654322         


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      ..|.|.....+.+.+..+....| |++|||+|.+...
T Consensus       396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~  431 (784)
T PRK10787        396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSD  431 (784)
T ss_pred             hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccc
Confidence            23445544455556666554555 8999999998754

>KOG2004|consensus

Probab=98.63  E-value=7.8e-08  Score=98.94  Aligned_cols=98  Identities=20%  Similarity=0.373  Sum_probs=76.3

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc---------
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY---------  215 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~---------  215 (390)
                      |=-|++++|+.+.+++....     ++  +-..|.-+.|+||||+|||++++.||..++..|+.++...+.         
T Consensus       412 DHYgm~dVKeRILEfiAV~k-----Lr--gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR  484 (906)
T KOG2004|consen  412 DHYGMEDVKERILEFIAVGK-----LR--GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR  484 (906)
T ss_pred             cccchHHHHHHHHHHHHHHh-----hc--ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence            45789999999999886521     11  234688899999999999999999999999988876654322         


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                      ..|+|+....+-+.+......+| +++|||+|.+.
T Consensus       485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG  518 (906)
T KOG2004|consen  485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG  518 (906)
T ss_pred             eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC
Confidence            44777777777777777777775 67899999987

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=2e-07  Score=91.83  Aligned_cols=61  Identities=16%  Similarity=0.198  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----KPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|..........+.    ..+.+.+.++|....+.. +++
T Consensus       141 q~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~  206 (351)
T PRK11432        141 QQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDT  206 (351)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence            4445578899999999999999999999988877665553    236889999999876543 444

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.63  E-value=1.6e-07  Score=97.95  Aligned_cols=62  Identities=19%  Similarity=0.146  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC---CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP---RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~---~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.++++||+.+.+|..+.....+.+...   ..+.+..+|+...+..+++
T Consensus       458 Gq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~  522 (544)
T TIGR01842       458 GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDK  522 (544)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCE
Confidence            3555678889999999999999999999999988887766543   5788999999766555544

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=1.9e-07  Score=92.12  Aligned_cols=61  Identities=20%  Similarity=0.187  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|..........+..    .+.+.+.++|....+.. +++
T Consensus       139 q~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~  204 (356)
T PRK11650        139 QRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADR  204 (356)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            44456788999999999999999999999888766555432    36889999998765443 443

>KOG1969|consensus

Probab=98.63  E-value=6.8e-08  Score=99.59  Aligned_cols=116  Identities=22%  Similarity=0.269  Sum_probs=78.7

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHHhc----ccc-------------CHHHhh----hcCCCCCceEEEEcCCCChH
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTVEW----PFK-------------YAREFE----RLAIPKPKGILLYGPPGCAK  191 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~----~~~-------------~~~~~~----~~~~~~~~~vLl~GppGtGK  191 (390)
                      -|..++....|.|+-|-+.+-..+..++..    .+.             ..+.+.    ..+.++.+-+||+||||-||
T Consensus       260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK  339 (877)
T KOG1969|consen  260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK  339 (877)
T ss_pred             eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence            698899999999998877776666555432    111             001111    12233456799999999999


Q ss_pred             HHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHH-HH---hcCCeEEEEcCCCCCC
Q psy11689        192 TSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHR-AR---LAAPAILFIDEIERTY  250 (390)
Q Consensus       192 T~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~-A~---~~~p~il~lDEid~~l  250 (390)
                      ||||+.+|+++|+.++.++.++-...  ......+..+... .-   -.+|.+|++||||...
T Consensus       340 TTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~  400 (877)
T KOG1969|consen  340 TTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP  400 (877)
T ss_pred             hHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence            99999999999999999999875432  2222333332222 11   2679999999999865

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.62  E-value=2.4e-07  Score=85.12  Aligned_cols=55  Identities=13%  Similarity=0.019  Sum_probs=42.7

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTA  282 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t  282 (390)
                      ..+++|...+|.++++||+.+.+|..+.....+.+..    ...+.+..+|++..+..+
T Consensus       150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~  208 (221)
T TIGR02211       150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL  208 (221)
T ss_pred             HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence            3666788889999999999999999888777665543    357888899987555443

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.62  E-value=2.6e-07  Score=83.88  Aligned_cols=52  Identities=17%  Similarity=0.150  Sum_probs=40.4

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      .+++|...+|.++++||+.+.+|..+.....+.+..   ...+.+..+|....+.
T Consensus       144 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~  198 (206)
T TIGR03608       144 ALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK  198 (206)
T ss_pred             HHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence            556788889999999999999999888777665533   3577788888875443

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.62  E-value=2.3e-07  Score=85.19  Aligned_cols=52  Identities=19%  Similarity=0.105  Sum_probs=41.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA  279 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i  279 (390)
                      ..+++|....|.++++||+.+.+|........+.+..    ...+.+..+|.+..+
T Consensus       140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~  195 (220)
T cd03293         140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEA  195 (220)
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence            4666788889999999999999999988877766543    257788899987544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.62  E-value=2.6e-07  Score=84.25  Aligned_cols=54  Identities=15%  Similarity=-0.023  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+..
T Consensus       143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~  199 (211)
T cd03225         143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE  199 (211)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            4666788889999999999999999988777665533   35788889998765544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.62  E-value=2.7e-07  Score=84.29  Aligned_cols=52  Identities=21%  Similarity=0.267  Sum_probs=41.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA  279 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i  279 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|+...+
T Consensus       139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~  194 (213)
T cd03259         139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA  194 (213)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence            4666788889999999999999999888777666543    256788888986544

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.62  E-value=2.4e-07  Score=91.35  Aligned_cols=61  Identities=18%  Similarity=0.237  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|..........+..    .+.+.+.++|....+.. +++
T Consensus       139 q~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~  204 (353)
T TIGR03265       139 QQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADR  204 (353)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence            34455778999999999999999999999887776665533    37889999999876543 443

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.61  E-value=3.4e-07  Score=83.68  Aligned_cols=54  Identities=19%  Similarity=0.172  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+..
T Consensus       146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~  202 (214)
T TIGR02673       146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR  202 (214)
T ss_pred             HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            4566788889999999999999999988777665543   36788889998765543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.61  E-value=4.3e-07  Score=94.98  Aligned_cols=119  Identities=13%  Similarity=0.133  Sum_probs=75.7

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccc--
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS--  210 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~--  210 (390)
                      .|..+|....|+++.|.+.+++.|...+...            ..+..+||+||+|+|||++|+++|+.+.+......  
T Consensus        13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~   80 (598)
T PRK09111         13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGG   80 (598)
T ss_pred             hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCC
Confidence            3555566666779999999999998887542            34668999999999999999999988765321111  


Q ss_pred             -----------c--------ccccCc--chhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        211 -----------A--------AQLYSP--YVGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       211 -----------~--------~~~~~~--~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                                 |        ++++..  -...+-..++.+...+...    ...|+||||++.+-. ...+.....+..
T Consensus        81 ~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-~a~naLLKtLEe  158 (598)
T PRK09111         81 PTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-AAFNALLKTLEE  158 (598)
T ss_pred             CccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-HHHHHHHHHHHh
Confidence                       0        011100  0011234566666655432    357999999998743 233344444444

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.61  E-value=2.7e-07  Score=84.24  Aligned_cols=53  Identities=17%  Similarity=0.152  Sum_probs=41.6

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+.
T Consensus       139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~  195 (213)
T cd03301         139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAM  195 (213)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            3566788889999999999999999988777665543    3678888999865443

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>KOG0991|consensus

Probab=98.61  E-value=9.4e-08  Score=86.57  Aligned_cols=106  Identities=18%  Similarity=0.305  Sum_probs=76.0

Q ss_pred             ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc-----
Q psy11689        131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR-----  205 (390)
Q Consensus       131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~-----  205 (390)
                      ...|.++|....+.||.|-++..+.+.-+...             ..-.++++.||||+||||-+.++|+++-.+     
T Consensus        14 ~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~   80 (333)
T KOG0991|consen   14 QLPWVEKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEA   80 (333)
T ss_pred             cchHHHhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhH
Confidence            34599999999999999999999998877754             245679999999999999999999886332     


Q ss_pred             hhccccccccCcchhhHHHHHHHHHHHHHhcCC----eEEEEcCCCCCCCh
Q psy11689        206 VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAP----AILFIDEIERTYNC  252 (390)
Q Consensus       206 ~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p----~il~lDEid~~l~~  252 (390)
                      +..++.++-.+-   ..-++--+.|+.-+..-|    .||++||+|++-+.
T Consensus        81 vLELNASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g  128 (333)
T KOG0991|consen   81 VLELNASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG  128 (333)
T ss_pred             hhhccCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH
Confidence            234554443221   112333356766555443    49999999998754

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.61  E-value=2.4e-07  Score=91.98  Aligned_cols=61  Identities=21%  Similarity=0.230  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|..........+..    .+.+.+.++|....+.. +++
T Consensus       149 q~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDr  214 (375)
T PRK09452        149 QQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDR  214 (375)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            34445788999999999999999999999888776655533    36888999998765443 443

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.61  E-value=1.8e-07  Score=98.18  Aligned_cols=62  Identities=19%  Similarity=0.139  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.++++||+.+.+|..++....+.+..  ...+.+.++|+...+..+++
T Consensus       480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~  543 (576)
T TIGR02204       480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADR  543 (576)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence            456667889999999999999999999999988877666644  36888999999766655444

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.60  E-value=1.9e-07  Score=83.32  Aligned_cols=110  Identities=14%  Similarity=0.049  Sum_probs=73.7

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc----------ch------------hcccccc-----ccCc-ch----
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY----------RV------------LAASAAQ-----LYSP-YV----  219 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~----------~~------------~~i~~~~-----~~~~-~~----  219 (390)
                      ++.+.++..+.|.||+|+|||||+++++.....          ++            +.+...+     +... ..    
T Consensus        20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l   99 (182)
T cd03215          20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI   99 (182)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHH
Confidence            456788999999999999999999999954210          00            0000000     1110 00    


Q ss_pred             -----hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        220 -----GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       220 -----g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                           -...+..+..+++|...+|.++++||+.+.+|........+.+..   ...+.+..+|....+..
T Consensus       100 ~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~  169 (182)
T cd03215         100 ALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG  169 (182)
T ss_pred             HHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence                 011233455788999999999999999999999888777665543   35778888888654443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=2.8e-07  Score=90.58  Aligned_cols=58  Identities=12%  Similarity=0.084  Sum_probs=46.0

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+.. |++
T Consensus       148 Rv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~  210 (343)
T PRK11153        148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDR  210 (343)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            34667888899999999999999999988877766543    26788999999877654 554

>PLN03232 ABC transporter C family member; Provisional

Probab=98.59  E-value=1.9e-07  Score=107.72  Aligned_cols=62  Identities=18%  Similarity=0.096  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      .|+.+-.+++|...+|.|+++||+++.+|..++..+.+.+...  ..|.+.++||+.++..+++
T Consensus      1375 GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~Dr 1438 (1495)
T PLN03232       1375 GQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDK 1438 (1495)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCE
Confidence            4556678899999999999999999999999998888877653  6899999999988888776

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.59  E-value=1.8e-07  Score=95.20  Aligned_cols=113  Identities=18%  Similarity=0.166  Sum_probs=81.3

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------c----------------------chh------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------Y----------------------RVL------------  207 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~----------------------~~~------------  207 (390)
                      ++.+.+|+.+-|+|++|||||||+++++....          .                      |+.            
T Consensus       311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i  390 (539)
T COG1123         311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDIL  390 (539)
T ss_pred             eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHH
Confidence            56788999999999999999999999992110          0                      000            


Q ss_pred             ------------------------cccc-ccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH
Q psy11689        208 ------------------------AASA-AQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTAD  260 (390)
Q Consensus       208 ------------------------~i~~-~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~  260 (390)
                                              .+.. +++..+|..+  +.|..+-.+++|....|.+|+.||+.+.+|.....++.+
T Consensus       391 ~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln  470 (539)
T COG1123         391 AEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN  470 (539)
T ss_pred             HhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH
Confidence                                    0000 1122333322  235566788899999999999999999999988877766


Q ss_pred             Hhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        261 NAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       261 ~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+..    .+++.+.++|.+.++.. |++
T Consensus       471 Ll~~lq~e~g~t~lfISHDl~vV~~i~dr  499 (539)
T COG1123         471 LLKDLQEELGLTYLFISHDLAVVRYIADR  499 (539)
T ss_pred             HHHHHHHHhCCEEEEEeCCHHHHHhhCce
Confidence            6644    47999999999987765 444

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.59  E-value=3.4e-07  Score=83.65  Aligned_cols=53  Identities=19%  Similarity=0.154  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   ...+.+..+|+...+.
T Consensus       145 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~  200 (214)
T cd03292         145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD  200 (214)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            4566788889999999999999999888777665533   3577888888865554

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK08727 hypothetical protein; Validated

Probab=98.59  E-value=3.1e-07  Score=85.36  Aligned_cols=178  Identities=13%  Similarity=0.065  Sum_probs=87.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY  254 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~  254 (390)
                      ...++|+||+|||||+|+.+++.++   +..+.++...+.        ...+..++..  ..+..+|+|||++.+.....
T Consensus        41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~--l~~~dlLiIDDi~~l~~~~~  110 (233)
T PRK08727         41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEA--LEGRSLVALDGLESIAGQRE  110 (233)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHH--HhcCCEEEEeCcccccCChH
Confidence            3559999999999999999998664   333334433221        1223344443  34567999999999876554


Q ss_pred             HHHHHHHhh----cCCCcEEEeccCHHHHHhcCchhHHHhHH-HhhhhcC--CchhHHHhhcccccccCCCCCCCCcchh
Q psy11689        255 REQTADNAK----KPRIPRTNGGYREQTADTANKPRIQRTKR-EYREQTA--DTAHKTRISRTNRGYREKTADTANKPRI  327 (390)
Q Consensus       255 ~~~~~~~~~----~~~~~~i~~~~~~~~i~~t~~~~~~r~~~-~~l~~l~--~~~~r~~I~~~n~~~r~~~~~~vdl~~l  327 (390)
                      .......+.    ..+...+..++....-...-.+++...+. .....++  +...+..|+-.....+....++-.+..|
T Consensus       111 ~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~L  190 (233)
T PRK08727        111 DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWL  190 (233)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            333222222    22333444443321111111233432211 1111222  3445555532212212223333345567


Q ss_pred             hhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689        328 PRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPR  369 (390)
Q Consensus       328 a~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~  369 (390)
                      +++..|-   ...+.+++...-..+...+ +.+|.+.+.+..
T Consensus       191 a~~~~rd---~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l  228 (233)
T PRK08727        191 LTHGERE---LAGLVALLDRLDRESLAAK-RRVTVPFLRRVL  228 (233)
T ss_pred             HHhCCCC---HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence            7765432   3334444555443333333 467777666543

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=3.5e-07  Score=90.92  Aligned_cols=61  Identities=16%  Similarity=0.181  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|..........+    ...+.+.+..+|....+.. +++
T Consensus       154 q~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDr  219 (377)
T PRK11607        154 QRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGR  219 (377)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence            344457789999999999999999999998877665333    3347889999999876443 544

>PLN03130 ABC transporter C family member; Provisional

Probab=98.59  E-value=2e-07  Score=107.80  Aligned_cols=62  Identities=16%  Similarity=0.089  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      .|+.+-.+++|...+|.||+|||+++.+|..++..+.+.+...  ..|.+.++||+.++..+++
T Consensus      1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~Dr 1441 (1622)
T PLN03130       1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR 1441 (1622)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCE
Confidence            3556678899999999999999999999999999888877653  6899999999999988876

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=3.3e-07  Score=86.32  Aligned_cols=53  Identities=23%  Similarity=0.036  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+.
T Consensus       137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~  193 (255)
T PRK11248        137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAV  193 (255)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            4666788889999999999999999888777665543    2577888999865443

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.59  E-value=2.2e-07  Score=87.55  Aligned_cols=58  Identities=16%  Similarity=0.156  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH----HhhcCCCcEEEeccCHHHH
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTAD----NAKKPRIPRTNGGYREQTA  279 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~----~~~~~~~~~i~~~~~~~~i  279 (390)
                      +.|..+.++++|....|.|++|||+...+|..-......    -....+.+.+.++|...-.
T Consensus       140 GGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea  201 (345)
T COG1118         140 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEA  201 (345)
T ss_pred             hHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHH
Confidence            345666788999999999999999999999765544433    3344589999999986543

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.59  E-value=6.9e-07  Score=91.52  Aligned_cols=60  Identities=22%  Similarity=0.295  Sum_probs=48.1

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..|..++.+..|.++.|.+.+.+.+...+...            ..+..+||+||+|+|||++|+.+|..+.
T Consensus         4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953          4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             hHHHHhhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34666667777779999999999998888541            2345589999999999999999998865

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.58  E-value=3.4e-07  Score=83.92  Aligned_cols=53  Identities=13%  Similarity=0.060  Sum_probs=41.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..   ...+.+..+|+...+.
T Consensus       145 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~  200 (218)
T cd03266         145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE  200 (218)
T ss_pred             HHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            3666788889999999999999999888776665543   3578888999865443

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.58  E-value=2.7e-07  Score=96.29  Aligned_cols=113  Identities=15%  Similarity=0.096  Sum_probs=77.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc------------------------cch-------h--cc---------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV------------------------YRV-------L--AA---------  209 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~------------------------~~~-------~--~i---------  209 (390)
                      ++.+++++.+.|.||+|+|||||++.+++...                        ..+       +  .+         
T Consensus       343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~  422 (547)
T PRK10522        343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANP  422 (547)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHH
Confidence            56788999999999999999999999992210                        000       0  00         


Q ss_pred             ----------cccccc---C----cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCc
Q psy11689        210 ----------SAAQLY---S----PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----KPRIP  268 (390)
Q Consensus       210 ----------~~~~~~---~----~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~  268 (390)
                                ......   .    +..-.+.+..+-.+++|...+|.++++||+.+.+|..++....+.+.    ....+
T Consensus       423 ~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~t  502 (547)
T PRK10522        423 ALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKT  502 (547)
T ss_pred             HHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence                      000000   0    00011235566788999999999999999999999998887766553    23678


Q ss_pred             EEEeccCHHHHHhcCc
Q psy11689        269 RTNGGYREQTADTANK  284 (390)
Q Consensus       269 ~i~~~~~~~~i~~t~~  284 (390)
                      .+.++|++..+..+++
T Consensus       503 vi~itH~~~~~~~~d~  518 (547)
T PRK10522        503 IFAISHDDHYFIHADR  518 (547)
T ss_pred             EEEEEechHHHHhCCE
Confidence            8999999766655554

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=3.1e-07  Score=87.69  Aligned_cols=57  Identities=14%  Similarity=0.090  Sum_probs=44.9

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|++..+..+++
T Consensus       149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dr  209 (279)
T PRK13650        149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDR  209 (279)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence            4677888999999999999999999888777665533    36788999999866655554

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.58  E-value=2.9e-07  Score=84.27  Aligned_cols=56  Identities=18%  Similarity=0.128  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC-----CCcEEEeccCHHHHHh
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP-----RIPRTNGGYREQTADT  281 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~-----~~~~i~~~~~~~~i~~  281 (390)
                      -+.+|++|....|.++++||+...+|....+.....+...     ..+.+.++|+..-+..
T Consensus       178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~  238 (257)
T COG1119         178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP  238 (257)
T ss_pred             HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccc
Confidence            3468999999999999999999999987776655544332     5567888888654433

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.58  E-value=5.9e-07  Score=93.54  Aligned_cols=57  Identities=26%  Similarity=0.300  Sum_probs=45.9

Q ss_pred             cccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        136 GEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       136 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      .++....|++|.|.+.+++.|...+...            ..+..+||+||+|||||++|+++|+.+.+
T Consensus         5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   61 (584)
T PRK14952          5 RKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNC   61 (584)
T ss_pred             HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4455666779999999999998887641            23445899999999999999999987664

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.58  E-value=4.6e-07  Score=84.10  Aligned_cols=53  Identities=17%  Similarity=0.021  Sum_probs=42.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+.
T Consensus       145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~  201 (235)
T cd03261         145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF  201 (235)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence            4666788889999999999999999988877666544    2578888999876544

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.57  E-value=4.5e-07  Score=95.22  Aligned_cols=59  Identities=24%  Similarity=0.211  Sum_probs=46.7

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      |.+++....|++|.|.+.+++.|...+...            ..+..+||+||+|+|||++++++|+.+.+
T Consensus         6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c   64 (585)
T PRK14950          6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNC   64 (585)
T ss_pred             HHHHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            445566666779999999999998877531            23456899999999999999999988653

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.57  E-value=3.9e-07  Score=88.01  Aligned_cols=58  Identities=16%  Similarity=0.158  Sum_probs=45.2

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+++|...+|.++++||+.+.+|+.......+.+..   .+.+.+..+|.+..+.. |++
T Consensus       132 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~  193 (302)
T TIGR01188       132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDR  193 (302)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence            34677888999999999999999999888777665533   36788899999876653 554

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.5e-06  Score=85.88  Aligned_cols=210  Identities=14%  Similarity=0.220  Sum_probs=112.2

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc-----hhccccccccCcc-
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR-----VLAASAAQLYSPY-  218 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~-----~~~i~~~~~~~~~-  218 (390)
                      .+.+-++..+++...+...+.         -..|.++++|||||||||+.++.++.+..-+     +++++|......+ 
T Consensus        18 ~l~~Re~ei~~l~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~   88 (366)
T COG1474          18 ELPHREEEINQLASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ   88 (366)
T ss_pred             cccccHHHHHHHHHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence            466667777777776543222         1355679999999999999999999886543     6778876544332 


Q ss_pred             --------------hhhHH-HHHHHHHHHHH-hcCCeEEEEcCCCCCCChhhHHHHHHHhhcC------CCcEEEeccCH
Q psy11689        219 --------------VGEAE-QNVTQLFHRAR-LAAPAILFIDEIERTYNCEYREQTADNAKKP------RIPRTNGGYRE  276 (390)
Q Consensus       219 --------------~g~~~-~~i~~~f~~A~-~~~p~il~lDEid~~l~~r~~~~~~~~~~~~------~~~~i~~~~~~  276 (390)
                                    .|... +....++.... ....-||+|||+|.+++...  ..+-.+...      ++..+..++..
T Consensus        89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--~~LY~L~r~~~~~~~~v~vi~i~n~~  166 (366)
T COG1474          89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--EVLYSLLRAPGENKVKVSIIAVSNDD  166 (366)
T ss_pred             HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--hHHHHHHhhccccceeEEEEEEeccH
Confidence                          11111 22222333222 34567999999999998764  222222111      12223333333


Q ss_pred             HHHHhcCchhHHHhHHHhhhhcCCc--hhHHHhhcc--cccccCCCCCCCCcchhhh---cCCCCCCCcHHHHHHHHHHH
Q psy11689        277 QTADTANKPRIQRTKREYREQTADT--AHKTRISRT--NRGYREKTADTANKPRIPR---TNRGYREYSAQNANTANKPR  349 (390)
Q Consensus       277 ~~i~~t~~~~~~r~~~~~l~~l~~~--~~r~~I~~~--n~~~r~~~~~~vdl~~la~---~t~gfs~~gaDL~~l~~~A~  349 (390)
                      .. ....++++...+......++++  .+-..|+..  +........++--++-+|.   ...| +  ..=--.+++.|+
T Consensus       167 ~~-~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-D--AR~aidilr~A~  242 (366)
T COG1474         167 KF-LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-D--ARKAIDILRRAG  242 (366)
T ss_pred             HH-HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-c--HHHHHHHHHHHH
Confidence            22 2223333332222222223332  222223211  1111111122222333333   3333 2  223356789999


Q ss_pred             HHHHHccccccChhhhhhhH
Q psy11689        350 IQRTKREYREQTADTANKPR  369 (390)
Q Consensus       350 ~~a~~r~~~~i~~~~~~~~~  369 (390)
                      ..|-+++..+++.+++.++.
T Consensus       243 eiAe~~~~~~v~~~~v~~a~  262 (366)
T COG1474         243 EIAEREGSRKVSEDHVREAQ  262 (366)
T ss_pred             HHHHhhCCCCcCHHHHHHHH
Confidence            99999999999999999983

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.57  E-value=4.1e-07  Score=83.55  Aligned_cols=53  Identities=17%  Similarity=0.141  Sum_probs=41.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+.
T Consensus       140 ~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~  196 (220)
T cd03265         140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAE  196 (220)
T ss_pred             HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            3666888889999999999999999888776665533    2567888889875544

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.57  E-value=4.1e-07  Score=82.91  Aligned_cols=53  Identities=15%  Similarity=0.085  Sum_probs=40.9

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..   ...+.+..+|....+.
T Consensus       137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~  192 (210)
T cd03269         137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE  192 (210)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence            4667888889999999999999999887766655533   3567888888865443

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.57  E-value=3.9e-07  Score=82.61  Aligned_cols=54  Identities=9%  Similarity=-0.032  Sum_probs=42.0

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|+...+.
T Consensus       133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~  189 (201)
T cd03231         133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS  189 (201)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhh
Confidence            34677888899999999999999999888777665532   3677888888754443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=4.5e-07  Score=84.11  Aligned_cols=55  Identities=13%  Similarity=0.032  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTA  282 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t  282 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+..+
T Consensus       154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~  212 (233)
T PRK11629        154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM  212 (233)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence            3566788889999999999999999988777665543    357888899987554443

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.57  E-value=3.9e-07  Score=81.03  Aligned_cols=109  Identities=22%  Similarity=0.224  Sum_probs=74.5

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc---chh----ccc------------------cccccCc-ch------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY---RVL----AAS------------------AAQLYSP-YV------  219 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~---~~~----~i~------------------~~~~~~~-~~------  219 (390)
                      ++.+.++..+.|.||+|+|||||+++++.....   .+.    .+.                  .+.++.. ..      
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~   99 (178)
T cd03229          20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL   99 (178)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence            466789999999999999999999999954210   000    000                  0011110 00      


Q ss_pred             -hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---C-CCcEEEeccCHHHHH
Q psy11689        220 -GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---P-RIPRTNGGYREQTAD  280 (390)
Q Consensus       220 -g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~-~~~~i~~~~~~~~i~  280 (390)
                       -...+..+..+.+|...+|.++++||+.+.+|..+.....+.+..   . ..+.+..+|....+.
T Consensus       100 ~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  165 (178)
T cd03229         100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA  165 (178)
T ss_pred             cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence             112345567889999999999999999999999888777665533   2 467788888865544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.56  E-value=4.5e-07  Score=85.50  Aligned_cols=108  Identities=22%  Similarity=0.241  Sum_probs=71.3

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc----------ch------h-cc-ccccccCc----------chh---
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY----------RV------L-AA-SAAQLYSP----------YVG---  220 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~----------~~------~-~i-~~~~~~~~----------~~g---  220 (390)
                      ++.+.++..+.|.||+|+|||||+++|+.....          +.      + ++ ..+.++..          ...   
T Consensus        32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~  111 (257)
T PRK11247         32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWR  111 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHH
Confidence            456789999999999999999999999944210          00      0 00 00000000          000   


Q ss_pred             -----------------------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEec
Q psy11689        221 -----------------------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGG  273 (390)
Q Consensus       221 -----------------------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~  273 (390)
                                             ...+..+..+.+|...+|.++++||+.+.+|........+.+..    ...+.+..+
T Consensus       112 ~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs  191 (257)
T PRK11247        112 DAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT  191 (257)
T ss_pred             HHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence                                   01122334667888899999999999999999988777665533    357888899


Q ss_pred             cCHHHH
Q psy11689        274 YREQTA  279 (390)
Q Consensus       274 ~~~~~i  279 (390)
                      |....+
T Consensus       192 Hd~~~~  197 (257)
T PRK11247        192 HDVSEA  197 (257)
T ss_pred             CCHHHH
Confidence            986554

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.56  E-value=4.2e-07  Score=85.40  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=72.8

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c---------cchhc----c------cccccc--C-c--------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V---------YRVLA----A------SAAQLY--S-P--------  217 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~---------~~~~~----i------~~~~~~--~-~--------  217 (390)
                      ++.+.++..+.|.||+|+|||||+++++...    |         +-++.    +      ...+..  . .        
T Consensus        24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  103 (251)
T PRK09544         24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILP  103 (251)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHH
Confidence            4667899999999999999999999999542    1         00000    0      000000  0 0        


Q ss_pred             -------------chh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHH
Q psy11689        218 -------------YVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQT  278 (390)
Q Consensus       218 -------------~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~  278 (390)
                                   ...  ...+..+..+++|...+|.++++||+.+.+|..+.....+.+..    ...+.+..+|....
T Consensus       104 ~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~  183 (251)
T PRK09544        104 ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL  183 (251)
T ss_pred             HHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence                         000  01233345777889999999999999999999888776665532    26788889998766


Q ss_pred             HH
Q psy11689        279 AD  280 (390)
Q Consensus       279 i~  280 (390)
                      +.
T Consensus       184 i~  185 (251)
T PRK09544        184 VM  185 (251)
T ss_pred             HH
Confidence            54

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.56  E-value=4.1e-07  Score=87.99  Aligned_cols=58  Identities=14%  Similarity=0.117  Sum_probs=45.9

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+++|..++|.++++||+.+.+|+.......+.+..   .+.+.+..+|.+..+.. |++
T Consensus       146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~  207 (306)
T PRK13537        146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR  207 (306)
T ss_pred             HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence            34677889999999999999999999988777665543   36788999999877654 554

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.56  E-value=3.8e-07  Score=90.49  Aligned_cols=60  Identities=18%  Similarity=0.137  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+..+++|...+|.++++||+.+.+|..........+..    .+.+.+.++|....+.. +++
T Consensus       139 ~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~  203 (369)
T PRK11000        139 RQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK  203 (369)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCE
Confidence            3345777889999999999999999999887766554432    36788999999865543 443

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.56  E-value=4.9e-07  Score=83.79  Aligned_cols=53  Identities=13%  Similarity=0.046  Sum_probs=41.7

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+.
T Consensus       149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~  205 (233)
T cd03258         149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVK  205 (233)
T ss_pred             HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            4666788889999999999999999988777665543    2678888999876554

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.56  E-value=3.7e-07  Score=82.34  Aligned_cols=107  Identities=16%  Similarity=0.133  Sum_probs=68.3

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cch-------h-ccc-cccccC-cch-----------h
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRV-------L-AAS-AAQLYS-PYV-----------G  220 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~-------~-~i~-~~~~~~-~~~-----------g  220 (390)
                      ++.+.++..+.|.||+|+|||||+++++....          .++       + ++. ...+.. ..+           +
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~   99 (195)
T PRK13541         20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN   99 (195)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc
Confidence            45678999999999999999999999995421          000       0 000 000000 000           0


Q ss_pred             -------------------------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEe
Q psy11689        221 -------------------------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNG  272 (390)
Q Consensus       221 -------------------------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~  272 (390)
                                               ...+..+-.+.+|...+|.++++||+.+.+|........+.+.   ....+.+..
T Consensus       100 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~  179 (195)
T PRK13541        100 SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLS  179 (195)
T ss_pred             cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence                                     0112233466678888999999999999999988776655443   345677777


Q ss_pred             ccCHHH
Q psy11689        273 GYREQT  278 (390)
Q Consensus       273 ~~~~~~  278 (390)
                      +|....
T Consensus       180 sh~~~~  185 (195)
T PRK13541        180 SHLESS  185 (195)
T ss_pred             eCCccc
Confidence            776543

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.56  E-value=4.8e-07  Score=83.06  Aligned_cols=53  Identities=15%  Similarity=0.075  Sum_probs=41.0

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..  ...+.+..+|.+..+.
T Consensus       142 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~  196 (220)
T cd03263         142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAE  196 (220)
T ss_pred             HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence            3566788889999999999999999888777665533  2467788888876554

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.55  E-value=4.7e-07  Score=82.90  Aligned_cols=54  Identities=11%  Similarity=-0.024  Sum_probs=41.7

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD  280 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~  280 (390)
                      +..+.+|...+|.++++||+.+.+|........+.+.   ..+.+.+..+|....+.
T Consensus       145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~  201 (214)
T PRK13543        145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP  201 (214)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence            3466788888999999999999999988777665553   23677888888875544

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.55  E-value=1.3e-08  Score=100.92  Aligned_cols=81  Identities=28%  Similarity=0.380  Sum_probs=69.9

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      .+++.++++||+++.+|++++|              ||||+ .|++|. +.++|.+|+.+    +.+.+++++ +.||+.
T Consensus       259 ~~~v~vI~ttn~~~~ld~al~r--------------~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~-~~la~~  323 (364)
T TIGR01242       259 RGNVKVIAATNRPDILDPALLR--------------PGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL-EAIAKM  323 (364)
T ss_pred             CCCEEEEEecCChhhCChhhcC--------------cccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH-HHHHHH
Confidence            4689999999999999988888              99999 677666 47889999876    556778899 889999


Q ss_pred             hcCCccccccccccccchhhhc
Q psy11689         83 EEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      |.||+|+||..+|.++++.+..
T Consensus       324 t~g~sg~dl~~l~~~A~~~a~~  345 (364)
T TIGR01242       324 TEGASGADLKAICTEAGMFAIR  345 (364)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987543

Many proteins may score above the trusted cutoff because an internal

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.55  E-value=6.8e-07  Score=82.73  Aligned_cols=52  Identities=15%  Similarity=0.016  Sum_probs=40.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTA  279 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i  279 (390)
                      ..+.+|....|.++++||+.+.+|........+.+.   ....+.+..+|.+..+
T Consensus       142 l~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~  196 (232)
T cd03218         142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET  196 (232)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            366678888999999999999999988877665443   3356778888886443

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.55  E-value=6.4e-07  Score=82.72  Aligned_cols=56  Identities=20%  Similarity=0.092  Sum_probs=42.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcC
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~  283 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+..++
T Consensus       155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d  214 (228)
T PRK10584        155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCD  214 (228)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence            3556778889999999999999999888777665532    2567888889876554433

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=7.8e-08  Score=101.50  Aligned_cols=99  Identities=21%  Similarity=0.315  Sum_probs=67.3

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCc----
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSP----  217 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~----  217 (390)
                      .|.|.+.....+..++.....   -+.. .-+|-.++||.||+|+|||-||+++|..+.   -.++.++.++++..    
T Consensus       492 rViGQd~AV~avs~aIrraRa---GL~d-p~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS  567 (786)
T COG0542         492 RVIGQDEAVEAVSDAIRRARA---GLGD-PNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS  567 (786)
T ss_pred             ceeChHHHHHHHHHHHHHHhc---CCCC-CCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence            477778877777777754211   1111 123446799999999999999999998886   67778888776633    


Q ss_pred             --------chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689        218 --------YVGEAEQNVTQLFHRARLAAPAILFIDEIERT  249 (390)
Q Consensus       218 --------~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~  249 (390)
                              |+|-.+.  ..+-...+..+.|||+|||++..
T Consensus       568 rLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKA  605 (786)
T COG0542         568 RLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKA  605 (786)
T ss_pred             HHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhc
Confidence                    4443331  12444455667799999999973

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=4.4e-07  Score=86.63  Aligned_cols=57  Identities=14%  Similarity=0.144  Sum_probs=44.7

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~  284 (390)
                      ..+.+|...+|.+|++||+.+.+|........+.+..    .+.+.+..+|.+..+..+++
T Consensus       149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~  209 (279)
T PRK13635        149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADR  209 (279)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCE
Confidence            4667888899999999999999999988877665543    26788899998766654443

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.55  E-value=4.9e-07  Score=82.28  Aligned_cols=53  Identities=13%  Similarity=0.021  Sum_probs=41.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|...+|.++++||+.+.+|..........+..   ...+.+..+|.+..+.
T Consensus       135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~  190 (208)
T cd03268         135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ  190 (208)
T ss_pred             HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            3566788889999999999999999888776655533   3577888889876554

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.8e-07  Score=91.34  Aligned_cols=113  Identities=20%  Similarity=0.259  Sum_probs=85.8

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHH----------------------------------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLA----------------------------------------------------  199 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia----------------------------------------------------  199 (390)
                      ++.++++..+.++||+|+|||++.+.+-                                                    
T Consensus       283 sf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~  362 (497)
T COG5265         283 SFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP  362 (497)
T ss_pred             cccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc
Confidence            5567889999999999999999999987                                                    


Q ss_pred             -----------HhhccchhccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        200 -----------AHSVYRVLAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       200 -----------~~~~~~~~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                                 +....+.+....|+.+...+|+      +.++.+.+.+++....|.|+++||+.+.+|..++..++..+
T Consensus       363 ~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l  442 (497)
T COG5265         363 DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAAL  442 (497)
T ss_pred             cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHH
Confidence                       1111222333445554444443      22455668889999999999999999999999999888777


Q ss_pred             hc--CCCcEEEeccCHHHHHhcCc
Q psy11689        263 KK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       263 ~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      ..  .+-|.+.++||+.+|..++.
T Consensus       443 ~~~~~~rttlviahrlsti~~ade  466 (497)
T COG5265         443 REVSAGRTTLVIAHRLSTIIDADE  466 (497)
T ss_pred             HHHhCCCeEEEEeehhhhccCCce
Confidence            44  47889999999988877664

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.54  E-value=6.3e-07  Score=83.99  Aligned_cols=108  Identities=16%  Similarity=0.109  Sum_probs=71.2

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----c-----c--hh--------cccccccc-----------------
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----Y-----R--VL--------AASAAQLY-----------------  215 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~-----~--~~--------~i~~~~~~-----------------  215 (390)
                      +.+.++..+.|.||+|+|||||+++++....     +     .  ++        .....+.+                 
T Consensus        20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~   99 (246)
T cd03237          20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI   99 (246)
T ss_pred             CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence            3456789999999999999999999994421     0     0  00        00000000                 


Q ss_pred             ----------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689        216 ----------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA  279 (390)
Q Consensus       216 ----------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i  279 (390)
                                ....+  ...+..+..+++|....|.++++||+.+.+|........+.+..    ...+.+.++|....+
T Consensus       100 l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~  179 (246)
T cd03237         100 AKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI  179 (246)
T ss_pred             HHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence                      00000  11233345777889999999999999999999888776655543    367888999987655


Q ss_pred             H
Q psy11689        280 D  280 (390)
Q Consensus       280 ~  280 (390)
                      .
T Consensus       180 ~  180 (246)
T cd03237         180 D  180 (246)
T ss_pred             H
Confidence            4

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.54  E-value=5.6e-07  Score=92.55  Aligned_cols=58  Identities=22%  Similarity=0.177  Sum_probs=46.0

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      |..+|....++++.|.+.+++.+...+...            .-+..+||+||+|+|||++++++|+.+.
T Consensus         4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~   61 (535)
T PRK08451          4 LALKYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALV   61 (535)
T ss_pred             HHHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            344555666669999999999998887541            2455679999999999999999998763

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.54  E-value=6.1e-07  Score=82.79  Aligned_cols=110  Identities=18%  Similarity=0.190  Sum_probs=71.1

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cchh------ccc----ccccc----------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRVL------AAS----AAQLY----------------  215 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~~------~i~----~~~~~----------------  215 (390)
                      ++.+.++..+.|.||+|+|||||+++++....          .+..      .+.    ..+..                
T Consensus        42 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~  121 (224)
T cd03220          42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE  121 (224)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHH
Confidence            56788999999999999999999999994321          0000      000    00000                


Q ss_pred             ---------------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccC
Q psy11689        216 ---------------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYR  275 (390)
Q Consensus       216 ---------------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~  275 (390)
                                     ...+.  ...+..+..+++|...+|.++++||+.+.+|........+.+..   ...+.+..+|.
T Consensus       122 ~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~  201 (224)
T cd03220         122 KIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD  201 (224)
T ss_pred             HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence                           00000  01123334677888899999999999999999877766555432   35678888888


Q ss_pred             HHHHHh
Q psy11689        276 EQTADT  281 (390)
Q Consensus       276 ~~~i~~  281 (390)
                      ...+..
T Consensus       202 ~~~~~~  207 (224)
T cd03220         202 PSSIKR  207 (224)
T ss_pred             HHHHHH
Confidence            755543

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.54  E-value=2.8e-07  Score=85.82  Aligned_cols=113  Identities=16%  Similarity=0.139  Sum_probs=81.0

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhccc-------------------------cccccCcchhh--H
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAAS-------------------------AAQLYSPYVGE--A  222 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~-------------------------~~~~~~~~~g~--~  222 (390)
                      ++.+..++.+.|+|.+||||||+++++..-....  -+.+.                         ..+...+|..+  +
T Consensus        33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG  112 (268)
T COG4608          33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG  112 (268)
T ss_pred             eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence            5667899999999999999999999998443210  00000                         01122333322  3


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .|..+-.+++|...+|.+++.||+.+.+|.....++...+..    .+++.+.++|...++..-.+
T Consensus       113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd  178 (268)
T COG4608         113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD  178 (268)
T ss_pred             hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence            466667889999999999999999999998777666555433    47899999999888776433

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.54  E-value=1.1e-06  Score=91.41  Aligned_cols=55  Identities=22%  Similarity=0.221  Sum_probs=44.1

Q ss_pred             cCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        138 EEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       138 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      +.+..|++|.|.+.+++.+...+...            ..+..+||+||+|+|||++|+++|+.+.+
T Consensus        10 yRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c   64 (563)
T PRK06647         10 RRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNC   64 (563)
T ss_pred             hCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence            34445559999999999998888541            23456999999999999999999988764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.54  E-value=3.3e-07  Score=105.16  Aligned_cols=62  Identities=18%  Similarity=0.166  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~t~~  284 (390)
                      .|+.+-.+++|...+|.||+|||+++.+|..++..+.+.+...    ..|.+.++||+.++..+++
T Consensus      1362 GQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~ 1427 (1466)
T PTZ00265       1362 GQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDK 1427 (1466)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCE
Confidence            4555668889999999999999999999999998888877654    6899999999988877765

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=5.5e-07  Score=85.72  Aligned_cols=57  Identities=11%  Similarity=0.010  Sum_probs=44.6

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH-hcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD-TANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~-~t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+. .+++
T Consensus       147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~  207 (274)
T PRK13647        147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQ  207 (274)
T ss_pred             HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence            4666888899999999999999999988777665533   3678899999987654 3444

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.1e-07  Score=89.80  Aligned_cols=108  Identities=30%  Similarity=0.363  Sum_probs=73.5

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhh-hcCC-CCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc-Ccchhh
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFE-RLAI-PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY-SPYVGE  221 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~-~~~~g~  221 (390)
                      -+.|.+..|+.+.-++..+.+...... +-.+ -..+++||.||.|||||.||..+|+.++.||-.-++..+. .+|+|+
T Consensus        62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGE  141 (408)
T COG1219          62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGE  141 (408)
T ss_pred             heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccch
Confidence            356666666665544433222211111 0001 1246799999999999999999999999999988887766 678888


Q ss_pred             HHHH-HHHHHHHH----HhcCCeEEEEcCCCCCCCh
Q psy11689        222 AEQN-VTQLFHRA----RLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       222 ~~~~-i~~~f~~A----~~~~p~il~lDEid~~l~~  252 (390)
                      .-.+ +.++++.|    .+.+..||++||+|.+..+
T Consensus       142 DVENillkLlqaadydV~rAerGIIyIDEIDKIark  177 (408)
T COG1219         142 DVENILLKLLQAADYDVERAERGIIYIDEIDKIARK  177 (408)
T ss_pred             hHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence            6655 44555543    4456689999999998754

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.53  E-value=9.8e-07  Score=93.65  Aligned_cols=101  Identities=19%  Similarity=0.199  Sum_probs=61.2

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cchhcccccc
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRVLAASAAQ  213 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~~~i~~~~  213 (390)
                      +.+.+-++..++|..++...+.        +-.++..++|+|+||||||++++.+..++.          +.++.++|..
T Consensus       755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~  826 (1164)
T PTZ00112        755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN  826 (1164)
T ss_pred             CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence            3566666666666666654322        112333456999999999999999986542          4456777744


Q ss_pred             ccCcc--------------h--h-hHHHHHHHHHHHHH--hcCCeEEEEcCCCCCCCh
Q psy11689        214 LYSPY--------------V--G-EAEQNVTQLFHRAR--LAAPAILFIDEIERTYNC  252 (390)
Q Consensus       214 ~~~~~--------------~--g-~~~~~i~~~f~~A~--~~~p~il~lDEid~~l~~  252 (390)
                      +...+              .  + .....+..+|....  .....||+|||+|.+...
T Consensus       827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK  884 (1164)
T PTZ00112        827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK  884 (1164)
T ss_pred             cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc
Confidence            22111              0  1 12234445565442  234579999999999875

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=4.8e-07  Score=85.87  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=43.0

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcC
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~  283 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+..++
T Consensus       151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d  210 (269)
T PRK13648        151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEAD  210 (269)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCC
Confidence            4666888889999999999999999988777665543    2578888889876554443

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.53  E-value=7.4e-07  Score=82.56  Aligned_cols=53  Identities=17%  Similarity=0.095  Sum_probs=42.0

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+.
T Consensus       123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  179 (230)
T TIGR01184       123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEAL  179 (230)
T ss_pred             HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            4666788889999999999999999988877665543    3578889999875543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.53  E-value=3.8e-07  Score=81.86  Aligned_cols=49  Identities=16%  Similarity=0.098  Sum_probs=37.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYRE  276 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~  276 (390)
                      ..+++|....|.++++||+.+.+|........+.+..   .+.+.+..+|.+
T Consensus       136 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~  187 (190)
T TIGR01166       136 VAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV  187 (190)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence            3566788889999999999999999887776655533   256777777764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.53  E-value=5.8e-07  Score=81.99  Aligned_cols=53  Identities=13%  Similarity=0.117  Sum_probs=41.7

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    ...+.+..+|....+.
T Consensus       137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  193 (211)
T cd03298         137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK  193 (211)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            3566788889999999999999999988877666543    2578888999876553

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.53  E-value=1.4e-06  Score=80.45  Aligned_cols=62  Identities=19%  Similarity=0.256  Sum_probs=44.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~  251 (390)
                      ..+..++|+||+|||||+|+++++++.   +.+++++++.+...            .+  .......+|+|||++.+-+
T Consensus        40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------------~~--~~~~~~~~liiDdi~~l~~  104 (227)
T PRK08903         40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------------AF--DFDPEAELYAVDDVERLDD  104 (227)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------------HH--hhcccCCEEEEeChhhcCc
Confidence            356789999999999999999999875   34555666544311            11  1233567999999998643

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.53  E-value=5.6e-07  Score=86.95  Aligned_cols=57  Identities=14%  Similarity=0.123  Sum_probs=44.8

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+.. |++
T Consensus       144 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~  204 (303)
T TIGR01288       144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR  204 (303)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence            4666888899999999999999999988777665543   36788999999876643 544

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.53  E-value=5.6e-07  Score=83.21  Aligned_cols=54  Identities=13%  Similarity=0.062  Sum_probs=42.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~  281 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..    ...+.+..+|....+..
T Consensus       140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~  197 (230)
T TIGR03410       140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARE  197 (230)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHH
Confidence            3556788889999999999999999988877665543    25788899998765553

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.53  E-value=6.1e-07  Score=82.83  Aligned_cols=56  Identities=14%  Similarity=0.165  Sum_probs=42.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcC
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~  283 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+..++
T Consensus       146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d  205 (225)
T PRK10247        146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHAD  205 (225)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCC
Confidence            4667888889999999999999999887766654433    2567888888865554333

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.53  E-value=6.2e-07  Score=81.80  Aligned_cols=53  Identities=15%  Similarity=0.045  Sum_probs=41.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+...  ..+.+..+|....+.
T Consensus       139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~  193 (211)
T cd03264         139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE  193 (211)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence            46667888899999999999999998887776655432  477788888876554

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0745|consensus

Probab=98.52  E-value=1.1e-07  Score=92.94  Aligned_cols=72  Identities=33%  Similarity=0.516  Sum_probs=61.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc-CcchhhH-HHHHHHHHHHH----HhcCCeEEEEcCCCCCC
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY-SPYVGEA-EQNVTQLFHRA----RLAAPAILFIDEIERTY  250 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~-~~~~g~~-~~~i~~~f~~A----~~~~p~il~lDEid~~l  250 (390)
                      .+|||.||+|+|||.|++.+|+-++.||..-+|..+. .+|+|+. +..+.+++..|    .+.+..||||||+|.+.
T Consensus       227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~  304 (564)
T KOG0745|consen  227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT  304 (564)
T ss_pred             ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence            5699999999999999999999999999999998876 6788874 45677777766    45677899999999988

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.52  E-value=3.6e-07  Score=80.87  Aligned_cols=105  Identities=20%  Similarity=0.197  Sum_probs=68.9

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----------------------------cchhc--------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----------------------------YRVLA--------------  208 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----------------------------~~~~~--------------  208 (390)
                      ++.+.++..+.+.||+|||||||.+.+|.-..                             +|+..              
T Consensus        25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi  104 (259)
T COG4525          25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGI  104 (259)
T ss_pred             ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCC
Confidence            56788999999999999999999999992100                             01000              


Q ss_pred             ---------------cccccccCcch--hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCC
Q psy11689        209 ---------------ASAAQLYSPYV--GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRI  267 (390)
Q Consensus       209 ---------------i~~~~~~~~~~--g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~  267 (390)
                                     +...+.-.+|.  -++.+..+.-.++|....|..+++||+...+|.-+.+..+..+..    .+.
T Consensus       105 ~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk  184 (259)
T COG4525         105 EKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK  184 (259)
T ss_pred             CHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence                           00000001111  112233345667899999999999999999998877776555433    456


Q ss_pred             cEEEeccCH
Q psy11689        268 PRTNGGYRE  276 (390)
Q Consensus       268 ~~i~~~~~~  276 (390)
                      ..+.++|.+
T Consensus       185 ~~lliTH~i  193 (259)
T COG4525         185 QVLLITHDI  193 (259)
T ss_pred             eEEEEeccH
Confidence            677788864

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.52  E-value=4.1e-07  Score=105.05  Aligned_cols=62  Identities=18%  Similarity=0.096  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .|+.+-.+++|...+|.||+|||+++.+|..++..+.+.+..  ...|.+.++||+.++..+++
T Consensus      1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~Dr 1488 (1522)
T TIGR00957      1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTR 1488 (1522)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence            456667889999999999999999999999999888887755  36899999999988888775

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.52  E-value=7.2e-07  Score=81.42  Aligned_cols=53  Identities=17%  Similarity=0.103  Sum_probs=40.8

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..   .+.+.+..+|....+.
T Consensus       144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~  199 (213)
T cd03262         144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAR  199 (213)
T ss_pred             HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            3556788889999999999999999887766665543   3567888888876553

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.51  E-value=7.1e-07  Score=86.16  Aligned_cols=57  Identities=12%  Similarity=0.074  Sum_probs=44.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|..++|.++++||+.+.+|........+.+...  ..+.+..+|.+..+.. |++
T Consensus       142 v~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~  201 (301)
T TIGR03522       142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR  201 (301)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCE
Confidence            46778899999999999999999998887766555332  5778888998875543 554

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK05642 DNA replication initiation factor; Validated

Probab=98.51  E-value=7.9e-07  Score=82.67  Aligned_cols=175  Identities=10%  Similarity=0.026  Sum_probs=86.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY  254 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~  254 (390)
                      ...++|+||+|+|||+|+++++++.   +..+++++..++...        ...+.....  +.++|+|||++.+.+...
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~d~LiiDDi~~~~~~~~  114 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLE--QYELVCLDDLDVIAGKAD  114 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhh--hCCEEEEechhhhcCChH
Confidence            3678999999999999999998764   345556666554331        112222222  336999999998876544


Q ss_pred             HHHHHHHh----hcCCCcEEEeccCHHHHHhcCchhHHHhH---H-HhhhhcCCchhHHHhhcccccccCCCCCCCCcch
Q psy11689        255 REQTADNA----KKPRIPRTNGGYREQTADTANKPRIQRTK---R-EYREQTADTAHKTRISRTNRGYREKTADTANKPR  326 (390)
Q Consensus       255 ~~~~~~~~----~~~~~~~i~~~~~~~~i~~t~~~~~~r~~---~-~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~  326 (390)
                      .+.....+    ...+...+..++....-...-.+++...+   . ..+. .++...+..++......+....++--++.
T Consensus       115 ~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~-~~~~e~~~~il~~ka~~~~~~l~~ev~~~  193 (234)
T PRK05642        115 WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMR-GLSDEDKLRALQLRASRRGLHLTDEVGHF  193 (234)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            33322222    22233344444322111111123332211   1 1111 22334444443211111222223223345


Q ss_pred             hhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhh
Q psy11689        327 IPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANK  367 (390)
Q Consensus       327 la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~  367 (390)
                      |+++.++ +  ++.+..++..-...+.. ..+.||..-+++
T Consensus       194 L~~~~~~-d--~r~l~~~l~~l~~~~l~-~~~~it~~~~~~  230 (234)
T PRK05642        194 ILTRGTR-S--MSALFDLLERLDQASLQ-AQRKLTIPFLKE  230 (234)
T ss_pred             HHHhcCC-C--HHHHHHHHHHHHHHHHH-cCCcCCHHHHHH
Confidence            5655443 3  67777777766543333 335577655443

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.51  E-value=5.8e-07  Score=81.42  Aligned_cols=55  Identities=5%  Similarity=-0.054  Sum_probs=41.3

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      +..+.+|...+|.++++||+.+.+|........+.+..   ...+.+..+|....+..
T Consensus       135 rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~  192 (200)
T PRK13540        135 QVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK  192 (200)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence            34666888889999999999999999888777665543   35677778887544433

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.51  E-value=6.2e-07  Score=93.80  Aligned_cols=62  Identities=15%  Similarity=0.062  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----KPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.|+++||+.+.+|..++....+.+.    ....+.+.++|++.++..+++
T Consensus       474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~  539 (555)
T TIGR01194       474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQ  539 (555)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence            35556688899999999999999999999999887765442    346889999999876655554

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.51  E-value=6.9e-07  Score=85.05  Aligned_cols=61  Identities=13%  Similarity=0.081  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +..+..+++|....|.|+++||+.+.+|........+.+..  ...+.+.++|++..+..+++
T Consensus       143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dr  205 (275)
T cd03289         143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQR  205 (275)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCE
Confidence            34455778899999999999999999999988777666653  35788899999876665554

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.51  E-value=8.1e-07  Score=81.74  Aligned_cols=54  Identities=15%  Similarity=0.043  Sum_probs=41.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..   ...+.+..+|.+..+..
T Consensus       146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~  202 (222)
T PRK10908        146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR  202 (222)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3566788889999999999999999887766554432   35778888898765543

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.51  E-value=5.8e-07  Score=86.39  Aligned_cols=60  Identities=15%  Similarity=0.134  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CC-CcEEEeccCHHHHHh-cCc
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PR-IPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~-~~~i~~~~~~~~i~~-t~~  284 (390)
                      +.+..++.|..+.|.++|+||+.+-+|+.......+.+..   .+ .+.+..+|.+..+.. |++
T Consensus       142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~  206 (293)
T COG1131         142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDR  206 (293)
T ss_pred             HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCE
Confidence            3445777889999999999999999999988877665543   34 678888898876655 553

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.51  E-value=1.1e-06  Score=92.80  Aligned_cols=120  Identities=12%  Similarity=0.146  Sum_probs=75.8

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc--
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA--  209 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i--  209 (390)
                      ..|..++.+..+++|.|.+.+++.+...+...            ..+..+||+||+|+|||++|+++|..+.+.-...  
T Consensus         6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~   73 (725)
T PRK07133          6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL   73 (725)
T ss_pred             hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC
Confidence            45666667777779999999999998888642            2456689999999999999999998765421100  


Q ss_pred             -c---c-------cccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        210 -S---A-------AQLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       210 -~---~-------~~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                       .   |       .+.+  ......+...++.+...+..    ....|++|||++.+-. ...+.....+..
T Consensus        74 ~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-~A~NALLKtLEE  144 (725)
T PRK07133         74 EPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-SAFNALLKTLEE  144 (725)
T ss_pred             CchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-HHHHHHHHHhhc
Confidence             0   0       0110  00001123446666666543    3457999999998643 333344444444

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.51  E-value=6.6e-07  Score=83.01  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcC
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTAN  283 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~  283 (390)
                      ..+..+.+|...+|.++++||+.+.+|........+.+...  +.+.+..+|....+..++
T Consensus       143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d  203 (236)
T cd03253         143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNAD  203 (236)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCC
Confidence            34457788899999999999999999998887766655332  567788888865554433

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.51  E-value=6.4e-07  Score=88.45  Aligned_cols=59  Identities=22%  Similarity=0.127  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+..+++|...+|.|+++||+.+.+|+.......+.+..    .+.+.+.++|.+..+.. +++
T Consensus       136 QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~dr  199 (363)
T TIGR01186       136 QRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDR  199 (363)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            334677899999999999999999999988877766543    36788999999875433 443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=6.5e-07  Score=85.36  Aligned_cols=57  Identities=11%  Similarity=0.072  Sum_probs=44.7

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+..+++
T Consensus       149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~  209 (277)
T PRK13642        149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDR  209 (277)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCE
Confidence            4666888889999999999999999988877666532    26788999998876655443

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.51  E-value=1.1e-06  Score=91.91  Aligned_cols=115  Identities=15%  Similarity=0.196  Sum_probs=70.6

Q ss_pred             ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch----------
Q psy11689        137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV----------  206 (390)
Q Consensus       137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~----------  206 (390)
                      ++....|++|.|.+.+++.|...+...            ..+..+||+||+|+|||++++++|+.+.+.-          
T Consensus         9 k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c   76 (576)
T PRK14965          9 KYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC   76 (576)
T ss_pred             HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence            344555569999999999998887541            2456689999999999999999998875421          


Q ss_pred             ---hccc---ccccc--CcchhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        207 ---LAAS---AAQLY--SPYVGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       207 ---~~i~---~~~~~--~~~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                         ..+.   ..++.  ......+...++.+...+...    ...|+||||++.+- ....+.....+..
T Consensus        77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-~~a~naLLk~LEe  145 (576)
T PRK14965         77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-TNAFNALLKTLEE  145 (576)
T ss_pred             HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-HHHHHHHHHHHHc
Confidence               0000   00110  111111224466666555322    33599999999764 3334444455544

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.51  E-value=6.4e-07  Score=82.22  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD  280 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~  280 (390)
                      .+..+++|...+|.++++||+.+.+|........+.+...  ..+.+..+|....+.
T Consensus       147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~  203 (220)
T cd03245         147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD  203 (220)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence            3456777888899999999999999999888776666442  357778888765443

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.50  E-value=5.4e-07  Score=96.04  Aligned_cols=61  Identities=10%  Similarity=0.015  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +..+-.+++|...+|.++++||+.+.+|........+.+...+.+.+.++|+...+..+++
T Consensus       587 qkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~  647 (659)
T TIGR00954       587 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEY  647 (659)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCE
Confidence            4455688899999999999999999999999888888877778889999999876655554

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.50  E-value=7.7e-07  Score=80.26  Aligned_cols=106  Identities=14%  Similarity=0.113  Sum_probs=72.8

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh--ccc--hhccc------------------cccccCc-ch---------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS--VYR--VLAAS------------------AAQLYSP-YV---------  219 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~--~~~--~~~i~------------------~~~~~~~-~~---------  219 (390)
                      ++.+.++..+.|.||+|+|||||+++++...  ...  -+.++                  ...++.. ..         
T Consensus        29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~  108 (194)
T cd03213          29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK  108 (194)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHH
Confidence            4567899999999999999999999999865  210  00000                  0011110 00         


Q ss_pred             ---hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHH
Q psy11689        220 ---GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQ  277 (390)
Q Consensus       220 ---g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~  277 (390)
                         -...+..+..+++|...+|.++++||+.+.+|........+.+..   ...+.+..+|.+.
T Consensus       109 ~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  172 (194)
T cd03213         109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS  172 (194)
T ss_pred             hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence               012244456788999999999999999999999888776655533   3567788888763

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.50  E-value=6.8e-07  Score=88.10  Aligned_cols=61  Identities=18%  Similarity=0.193  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|........+.+..    .+.+.+.++|....+.. +++
T Consensus       141 q~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dr  206 (353)
T PRK10851        141 QKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADR  206 (353)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            33445777899999999999999999999888776655533    36788999999876544 443

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.50  E-value=6.2e-07  Score=81.25  Aligned_cols=109  Identities=17%  Similarity=0.126  Sum_probs=74.0

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc--c--chhccccc----------------------cccC---------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV--Y--RVLAASAA----------------------QLYS---------  216 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~--~--~~~~i~~~----------------------~~~~---------  216 (390)
                      ++.+.++..+.|.||+|+|||||+++++....  .  --+.++..                      .+..         
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~   99 (200)
T cd03217          20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR   99 (200)
T ss_pred             ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh
Confidence            45678999999999999999999999997621  0  00001000                      0000         


Q ss_pred             cc--hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        217 PY--VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       217 ~~--~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..  .-...+..+..+.+|...+|.++++||+.+.+|..+.....+.+..   ...+.+..+|.+..+.
T Consensus       100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~  168 (200)
T cd03217         100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD  168 (200)
T ss_pred             hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence            00  0012244556888999999999999999999999887776665543   2567888888865544

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=4.9e-07  Score=90.89  Aligned_cols=113  Identities=17%  Similarity=0.184  Sum_probs=79.9

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccch-----------------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRV-----------------------------------  206 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~-----------------------------------  206 (390)
                      ++.+.+|+.+.|.|++||||||+++.+++..          |.+.                                   
T Consensus       358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~  437 (573)
T COG4987         358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP  437 (573)
T ss_pred             ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC
Confidence            5678899999999999999999999999211          0011                                   


Q ss_pred             ------------------hccccccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        207 ------------------LAASAAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       207 ------------------~~i~~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                                        ...+.++....|+|+      +.+.-+-..+++..+...++++||++..+|+.++.++++.+
T Consensus       438 ~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll  517 (573)
T COG4987         438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL  517 (573)
T ss_pred             CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHH
Confidence                              011111122223332      22444567888888899999999999999999999988877


Q ss_pred             hc--CCCcEEEeccCHHHHHhcCc
Q psy11689        263 KK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       263 ~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      ..  ...+.+.++|+..-+..+++
T Consensus       518 ~~~~~~kTll~vTHrL~~le~~dr  541 (573)
T COG4987         518 FEHAEGKTLLMVTHRLRGLERMDR  541 (573)
T ss_pred             HHHhcCCeEEEEecccccHhhcCE
Confidence            44  36788999998755555554

>KOG2028|consensus

Probab=98.50  E-value=1.6e-07  Score=90.01  Aligned_cols=67  Identities=36%  Similarity=0.593  Sum_probs=49.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccc---hhccccccccCcchhhHHHHHHHHHHHHHhc-----CCeEEEEcCCCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYR---VLAASAAQLYSPYVGEAEQNVTQLFHRARLA-----APAILFIDEIER  248 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~---~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~-----~p~il~lDEid~  248 (390)
                      .-.+++|.||||||||+||+.|+..+.-+   |+.++..       ...-+.++.+|+.++..     ...||||||+.+
T Consensus       161 ~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHR  233 (554)
T KOG2028|consen  161 RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHR  233 (554)
T ss_pred             CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence            34569999999999999999999887644   4444432       23346688888887543     357999999998


Q ss_pred             CC
Q psy11689        249 TY  250 (390)
Q Consensus       249 ~l  250 (390)
                      +-
T Consensus       234 FN  235 (554)
T KOG2028|consen  234 FN  235 (554)
T ss_pred             hh
Confidence            63

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.50  E-value=7.4e-07  Score=81.85  Aligned_cols=52  Identities=15%  Similarity=0.139  Sum_probs=40.5

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      .+++|...+|.++++||+.+.+|........+.+..   ...+.+..+|.+..+.
T Consensus       142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~  196 (222)
T cd03224         142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFAL  196 (222)
T ss_pred             HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            555777888999999999999999988777665543   3577888889875543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PTZ00243 ABC transporter; Provisional

Probab=98.50  E-value=5.2e-07  Score=104.21  Aligned_cols=62  Identities=16%  Similarity=0.116  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHhcC-CeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAA-PAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~-p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      .|+.+-.+++|...+ |.||+|||+++.+|..++..+.+.+...  ..|.+.++||+.++..+++
T Consensus      1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~Dr 1513 (1560)
T PTZ00243       1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDK 1513 (1560)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCE
Confidence            355566888998885 8999999999999999999888877553  6899999999988888776

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.49  E-value=6.9e-07  Score=82.50  Aligned_cols=57  Identities=23%  Similarity=0.172  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhc
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTA  282 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t  282 (390)
                      .+..+++|...+|.++++||+.+.+|........+.+...  ..+.+..+|....+..+
T Consensus       146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~  204 (229)
T cd03254         146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNA  204 (229)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence            3456778888999999999999999998887766555432  46778888876554433

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.49  E-value=7.5e-07  Score=81.12  Aligned_cols=53  Identities=9%  Similarity=-0.052  Sum_probs=40.9

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..   .+.+.+..+|....+.
T Consensus       136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~  191 (207)
T PRK13539        136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLP  191 (207)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhc
Confidence            4566788889999999999999999888777665543   3677788888754443

>PRK06620 hypothetical protein; Validated

Probab=98.49  E-value=1e-06  Score=80.84  Aligned_cols=165  Identities=10%  Similarity=0.001  Sum_probs=78.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHH
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQT  258 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~  258 (390)
                      ..++||||||||||+|++++++..+..++.  ....           ....     ....++++|||++.+-+ ..--..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~-----~~~~d~lliDdi~~~~~-~~lf~l  105 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEI-----LEKYNAFIIEDIENWQE-PALLHI  105 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhH-----HhcCCEEEEeccccchH-HHHHHH
Confidence            679999999999999999999887643322  1000           0011     12347999999995421 111122


Q ss_pred             HHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHH-Hhhhh--cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCC
Q psy11689        259 ADNAKKPRIPRTNGGYREQTADTANKPRIQRTKR-EYREQ--TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYR  335 (390)
Q Consensus       259 ~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~-~~l~~--l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs  335 (390)
                      ...+...+...+..+...-. .-.- +++.-.+. .....  .++...+..++......+....++--+..|+++..| +
T Consensus       106 ~N~~~e~g~~ilits~~~p~-~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d  182 (214)
T PRK06620        106 FNIINEKQKYLLLTSSDKSR-NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-E  182 (214)
T ss_pred             HHHHHhcCCEEEEEcCCCcc-ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-C
Confidence            22222334334444432111 0011 33321111 00111  223344444431111112222333334556666543 3


Q ss_pred             CCcHHHHHHHHHHHHHHHHccccccChhhhhhh
Q psy11689        336 EYSAQNANTANKPRIQRTKREYREQTADTANKP  368 (390)
Q Consensus       336 ~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~  368 (390)
                        .+.+..++......+...+ +.||...+++.
T Consensus       183 --~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~  212 (214)
T PRK06620        183 --YSKIIEILENINYFALISK-RKITISLVKEV  212 (214)
T ss_pred             --HHHHHHHHHHHHHHHHHcC-CCCCHHHHHHH
Confidence              6777777777543333333 46777666543

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.48  E-value=9.4e-07  Score=86.69  Aligned_cols=57  Identities=14%  Similarity=0.123  Sum_probs=45.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|..++|.++++||+.+.+|+.......+.+..   .+.+.+..+|.+..+.. |++
T Consensus       181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~  241 (340)
T PRK13536        181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR  241 (340)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence            4666888899999999999999999988777665543   36788999999877654 554

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.48  E-value=8.2e-07  Score=87.78  Aligned_cols=59  Identities=19%  Similarity=0.179  Sum_probs=45.3

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---C--CCcEEEeccCHHHHHh-cCc
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---P--RIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~--~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+.++++|...+|.++++||+.+.+|..........+..   .  +.+.+.++|....+.. +++
T Consensus       144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dr  208 (362)
T TIGR03258       144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADK  208 (362)
T ss_pred             HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCE
Confidence            335677889999999999999999999887777665532   2  5788999999876543 443

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.48  E-value=1e-06  Score=83.91  Aligned_cols=57  Identities=11%  Similarity=0.045  Sum_probs=44.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHhcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|..+.....+.+.   ..+.+.+..+|.+..+..+++
T Consensus       145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~  204 (274)
T PRK13644        145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADR  204 (274)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCE
Confidence            366688889999999999999999988777666553   346788999998776654443

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.48  E-value=9.9e-07  Score=82.04  Aligned_cols=52  Identities=19%  Similarity=0.121  Sum_probs=41.0

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~  280 (390)
                      .+.+|...+|.++++||+.+.+|........+.+...    ..+.+..+|....+.
T Consensus       163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~  218 (236)
T cd03267         163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIE  218 (236)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence            5667888899999999999999999888777655432    567888888875543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.48  E-value=7.9e-07  Score=82.39  Aligned_cols=59  Identities=20%  Similarity=0.195  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcC
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~  283 (390)
                      ..+-.+++|...+|.++++||+.+.+|........+.+..  ...+.+..+|....+..++
T Consensus       144 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d  204 (234)
T cd03251         144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENAD  204 (234)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCC
Confidence            3445677888899999999999999999988777665543  2567788888775554443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.48  E-value=7.9e-07  Score=82.66  Aligned_cols=58  Identities=21%  Similarity=0.205  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcC
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~  283 (390)
                      .+..+++|...+|.++++||+.+.+|........+.+..  .+.+.+..+|....+..|+
T Consensus       146 qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d  205 (238)
T cd03249         146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNAD  205 (238)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCC
Confidence            344677888889999999999999999888777665533  3567788888765554433

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.48  E-value=9.5e-07  Score=82.23  Aligned_cols=53  Identities=15%  Similarity=0.157  Sum_probs=41.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|++..+.
T Consensus       145 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~  201 (239)
T cd03296         145 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEAL  201 (239)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            3566788889999999999999999988777665543    2578888999875443

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.48  E-value=8e-07  Score=84.85  Aligned_cols=57  Identities=14%  Similarity=0.037  Sum_probs=44.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+..+++
T Consensus       153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~  213 (280)
T PRK13633        153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADR  213 (280)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCE
Confidence            3556788889999999999999999988877665543    36788999998876654443

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.48  E-value=1.2e-06  Score=79.43  Aligned_cols=108  Identities=18%  Similarity=0.300  Sum_probs=67.9

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHh-----hccch----hccccccccCc------------chhhHHHHHHHHH
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH-----SVYRV----LAASAAQLYSP------------YVGEAEQNVTQLF  230 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~-----~~~~~----~~i~~~~~~~~------------~~g~~~~~i~~~f  230 (390)
                      ++.+..++.++|.||+|+|||||+++++..     .|.++    +.+....++..            ........+..++
T Consensus        19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL   98 (199)
T cd03283          19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIV   98 (199)
T ss_pred             eEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHH
Confidence            444556788999999999999999999843     23221    00000001100            0111124466777


Q ss_pred             HHHHhcCCeEEEEcCCCCCCChhhHHHH----HHHhhcCCCcEEEeccCHHHH
Q psy11689        231 HRARLAAPAILFIDEIERTYNCEYREQT----ADNAKKPRIPRTNGGYREQTA  279 (390)
Q Consensus       231 ~~A~~~~p~il~lDEid~~l~~r~~~~~----~~~~~~~~~~~i~~~~~~~~i  279 (390)
                      +.+....|+++++||+.+.++.......    ...+.....+.+..+|....+
T Consensus        99 ~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~  151 (199)
T cd03283          99 EKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELA  151 (199)
T ss_pred             HhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHH
Confidence            7766668999999999999998765433    233444567778888876443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.48  E-value=9.5e-07  Score=82.05  Aligned_cols=57  Identities=21%  Similarity=0.159  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhc
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTA  282 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t  282 (390)
                      .+..+.+|...+|.++++||+.+.+|........+.+..  .+.+.+..+|.+..+..+
T Consensus       145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~  203 (237)
T cd03252         145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNA  203 (237)
T ss_pred             HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence            345677888899999999999999999988877665543  256778888887555433

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.47  E-value=9e-07  Score=79.66  Aligned_cols=106  Identities=19%  Similarity=0.082  Sum_probs=71.5

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh------c-c-----ch-------h-cc-ccccccCc-ch----------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS------V-Y-----RV-------L-AA-SAAQLYSP-YV----------  219 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~------~-~-----~~-------~-~i-~~~~~~~~-~~----------  219 (390)
                      ++.+.+++.+.|.||+|+|||||+++++...      | +     ++       + ++ ..+.++.. .+          
T Consensus        27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~  106 (192)
T cd03232          27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL  106 (192)
T ss_pred             EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence            4567889999999999999999999999631      1 0     00       0 00 00011110 00          


Q ss_pred             --hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHH
Q psy11689        220 --GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQ  277 (390)
Q Consensus       220 --g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~  277 (390)
                        -...+..+..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+.
T Consensus       107 ~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~  169 (192)
T cd03232         107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS  169 (192)
T ss_pred             hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence              011234456788999999999999999999999888776665533   3577888888764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.47  E-value=1e-06  Score=80.63  Aligned_cols=52  Identities=17%  Similarity=0.073  Sum_probs=40.0

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      .+.+|...+|.++++||+.+.+|..+.....+.+..    ...+.+..+|....+.
T Consensus       138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~  193 (213)
T TIGR01277       138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR  193 (213)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            555777888999999999999999988777665533    2567888888865443

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=9.5e-07  Score=86.24  Aligned_cols=59  Identities=12%  Similarity=0.077  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+..+++|...+|.+|++||+.+.+|......+.+.+..    .+.+.+.++|.+..+.. +++
T Consensus       161 QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adr  224 (327)
T PRK11308        161 QRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADE  224 (327)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence            334667888899999999999999999888877665533    36889999999888764 554

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.47  E-value=1.6e-06  Score=88.13  Aligned_cols=55  Identities=22%  Similarity=0.275  Sum_probs=43.8

Q ss_pred             cCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        138 EEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       138 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      +....|++|.|.+.+++.+...+...            ..+..+||+||||+|||++|+++|+.+..
T Consensus        11 yRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c   65 (451)
T PRK06305         11 YRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNC   65 (451)
T ss_pred             hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            34445559999999999988887541            24567999999999999999999987643

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.47  E-value=1.1e-06  Score=82.08  Aligned_cols=53  Identities=21%  Similarity=0.082  Sum_probs=41.3

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA  279 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i  279 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|++..+
T Consensus       143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~  199 (242)
T cd03295         143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEA  199 (242)
T ss_pred             HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH
Confidence            34667888889999999999999999888776665543    257788888987544

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.47  E-value=1.9e-07  Score=82.49  Aligned_cols=73  Identities=22%  Similarity=0.378  Sum_probs=48.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhcc----chhccccccccCcchhhHHHHHHHHHH----HHHhcCCeEEEEcCCCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVY----RVLAASAAQLYSPYVGEAEQNVTQLFH----RARLAAPAILFIDEIER  248 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~----~~~~i~~~~~~~~~~g~~~~~i~~~f~----~A~~~~p~il~lDEid~  248 (390)
                      |...+||+||+|+|||.|++++|..+..    +++.++++++...  +..+..+...+.    .....+..||+|||+|.
T Consensus         2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK   79 (171)
T PF07724_consen    2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK   79 (171)
T ss_dssp             -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence            4567999999999999999999999986    8888888876651  011111111111    11112223999999999


Q ss_pred             CCC
Q psy11689        249 TYN  251 (390)
Q Consensus       249 ~l~  251 (390)
                      ...
T Consensus        80 a~~   82 (171)
T PF07724_consen   80 AHP   82 (171)
T ss_dssp             CSH
T ss_pred             ccc
Confidence            765

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.47  E-value=8.8e-07  Score=80.03  Aligned_cols=49  Identities=10%  Similarity=-0.045  Sum_probs=37.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYRE  276 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~  276 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|..
T Consensus       136 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~  187 (198)
T TIGR01189       136 LALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD  187 (198)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence            4566788889999999999999999877766655543   356777777764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.47  E-value=5.2e-07  Score=94.57  Aligned_cols=115  Identities=15%  Similarity=0.201  Sum_probs=79.2

Q ss_pred             CccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        130 ERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       130 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      ....|.+++....++++.|.+...+.+..++...        .++..+++.++|+||||||||++++++|++.+..++..
T Consensus        70 ~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew  141 (637)
T TIGR00602        70 GNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEW  141 (637)
T ss_pred             ccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHH
Confidence            3457999999999999999999999888877542        22334567799999999999999999999988766542


Q ss_pred             -ccc---cccCcc------------hhhHHHHHHHHHHHHHh----------cCCeEEEEcCCCCCCCh
Q psy11689        210 -SAA---QLYSPY------------VGEAEQNVTQLFHRARL----------AAPAILFIDEIERTYNC  252 (390)
Q Consensus       210 -~~~---~~~~~~------------~g~~~~~i~~~f~~A~~----------~~p~il~lDEid~~l~~  252 (390)
                       +..   .....+            .....+.+..++..|..          ....||||||++.++..
T Consensus       142 ~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r  210 (637)
T TIGR00602       142 SNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR  210 (637)
T ss_pred             hhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh
Confidence             111   000000            01222445555555542          34679999999987743

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.47  E-value=9.6e-07  Score=87.12  Aligned_cols=58  Identities=19%  Similarity=0.185  Sum_probs=44.6

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..    .+.+.+.++|....+.. +++
T Consensus       136 RvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~  198 (352)
T PRK11144        136 RVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADR  198 (352)
T ss_pred             HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCE
Confidence            34677888999999999999999999888766655533    26788999999865543 443

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.47  E-value=7.9e-07  Score=81.22  Aligned_cols=53  Identities=15%  Similarity=0.072  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   ...+.+..+|....+.
T Consensus       141 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~  196 (213)
T cd03235         141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVL  196 (213)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            3566788889999999999999999888776665533   3577888999876554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.47  E-value=1.3e-06  Score=81.04  Aligned_cols=54  Identities=20%  Similarity=0.126  Sum_probs=41.8

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|++..+..
T Consensus       152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~  208 (236)
T cd03219         152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMS  208 (236)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence            3556778889999999999999999888777665533   45778889998765543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.46  E-value=1e-06  Score=88.18  Aligned_cols=59  Identities=15%  Similarity=0.147  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+..+++|..++|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+.. +++
T Consensus       146 QRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adr  208 (402)
T PRK09536        146 QRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDE  208 (402)
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence            345777899999999999999999999887766654432   36788889999877654 554

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.46  E-value=1.3e-06  Score=80.93  Aligned_cols=53  Identities=19%  Similarity=0.155  Sum_probs=41.7

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|...+|.++++||+...+|........+.+..    .+.+.+..+|+...+.
T Consensus       139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~  195 (232)
T cd03300         139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEAL  195 (232)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            4666788889999999999999999988877655533    2678888889875543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.46  E-value=1.1e-06  Score=83.50  Aligned_cols=52  Identities=19%  Similarity=0.087  Sum_probs=40.9

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA  279 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i  279 (390)
                      ..+++|....|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+
T Consensus       169 v~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~  224 (269)
T cd03294         169 VGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEA  224 (269)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            3566788889999999999999999988777665533    257888888986544

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.46  E-value=1.1e-06  Score=83.19  Aligned_cols=109  Identities=17%  Similarity=0.098  Sum_probs=71.4

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chhc----c----cccccc------Ccc--------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVLA----A----SAAQLY------SPY--------  218 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~~----i----~~~~~~------~~~--------  218 (390)
                      ++.+.++..+.|.||+|+|||||++++++....           .+..    +    ...+.+      ..+        
T Consensus        44 s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~  123 (264)
T PRK13546         44 SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAM  123 (264)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHH
Confidence            567889999999999999999999999954210           0000    0    000000      000        


Q ss_pred             -----------------hh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCH
Q psy11689        219 -----------------VG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYRE  276 (390)
Q Consensus       219 -----------------~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~  276 (390)
                                       .+  .+.+..+-.+++|....|.++++||+.+.+|........+.+.   ....+.+..+|..
T Consensus       124 ~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~  203 (264)
T PRK13546        124 TPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL  203 (264)
T ss_pred             HHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence                             00  0122333467788889999999999999999887766655543   3467888888886


Q ss_pred             HHHH
Q psy11689        277 QTAD  280 (390)
Q Consensus       277 ~~i~  280 (390)
                      ..+.
T Consensus       204 ~~i~  207 (264)
T PRK13546        204 GQVR  207 (264)
T ss_pred             HHHH
Confidence            5543

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.46  E-value=1.4e-06  Score=79.18  Aligned_cols=112  Identities=17%  Similarity=0.189  Sum_probs=74.1

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cch-----------h-cc-cccccc-----------Cc
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRV-----------L-AA-SAAQLY-----------SP  217 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~-----------~-~i-~~~~~~-----------~~  217 (390)
                      ++.+.++..+.|.||+|+|||||+++++....          .+.           + ++ ..+.++           ..
T Consensus        28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~  107 (207)
T cd03369          28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE  107 (207)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCC
Confidence            45678999999999999999999999994311          000           0 00 000000           00


Q ss_pred             ch----------------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHH
Q psy11689        218 YV----------------GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTA  279 (390)
Q Consensus       218 ~~----------------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i  279 (390)
                      +.                -...+..+..+++|...+|.++++||+.+.+|........+.+...  ..+.+..+|....+
T Consensus       108 ~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~  187 (207)
T cd03369         108 YSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTI  187 (207)
T ss_pred             CCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence            00                0012344567888899999999999999999998887766655432  56778888887655


Q ss_pred             HhcC
Q psy11689        280 DTAN  283 (390)
Q Consensus       280 ~~t~  283 (390)
                      ..++
T Consensus       188 ~~~d  191 (207)
T cd03369         188 IDYD  191 (207)
T ss_pred             hhCC
Confidence            4443

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=1e-06  Score=83.38  Aligned_cols=53  Identities=8%  Similarity=-0.048  Sum_probs=41.9

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.|+++||+.+.+|........+.+..    .+.+.+..+|.+..+.
T Consensus       156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~  212 (265)
T PRK10575        156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA  212 (265)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            4666888899999999999999999988766665533    2578888999876554

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.46  E-value=2.1e-06  Score=90.07  Aligned_cols=54  Identities=13%  Similarity=0.211  Sum_probs=43.5

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      ....|++|.|.+.+++.|...+...            .-+..+||+||+|+|||++|+++|+.+.+
T Consensus        11 RP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c   64 (620)
T PRK14954         11 RPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (620)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3444559999999999988876431            34566999999999999999999988865

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.46  E-value=1.2e-06  Score=81.48  Aligned_cols=52  Identities=19%  Similarity=0.154  Sum_probs=40.9

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      .+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+.
T Consensus       154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~  209 (241)
T cd03256         154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAR  209 (241)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            555778889999999999999999888777665543    2578888999875554

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=1.1e-06  Score=83.47  Aligned_cols=54  Identities=11%  Similarity=-0.045  Sum_probs=42.0

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|....+..
T Consensus       145 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  201 (271)
T PRK13638        145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYE  201 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3566788889999999999999999888776665533   35778888998766543

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=1.1e-06  Score=83.78  Aligned_cols=58  Identities=10%  Similarity=0.004  Sum_probs=44.8

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH-hcCc
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD-TANK  284 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~-~t~~  284 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+. .+++
T Consensus       145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~dr  207 (277)
T PRK13652        145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADY  207 (277)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence            34677888999999999999999999887776665532    2678899999887664 4554

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.45  E-value=1.4e-06  Score=80.00  Aligned_cols=57  Identities=18%  Similarity=0.086  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhc
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTA  282 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t  282 (390)
                      .+..+.+|...+|.++++||+.+.+|........+.+..  ...+.+..+|....+..+
T Consensus       146 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~  204 (221)
T cd03244         146 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDS  204 (221)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC
Confidence            345677888899999999999999999988877666643  245677888876544433

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.45  E-value=9.5e-07  Score=83.93  Aligned_cols=56  Identities=11%  Similarity=-0.000  Sum_probs=42.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHhcC
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADTAN  283 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~t~  283 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+...    ..+.+..+|....+..++
T Consensus       151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d  210 (271)
T PRK13632        151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILAD  210 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCC
Confidence            45667888899999999999999998887776666442    367788888865544333

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.45  E-value=7.5e-07  Score=81.11  Aligned_cols=56  Identities=21%  Similarity=0.151  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA  279 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i  279 (390)
                      |..+...++|...+|.||+-||+-+.+|+.+...+++.+..    .++|.+..-|.+...
T Consensus       152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA  211 (258)
T COG3638         152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA  211 (258)
T ss_pred             hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH
Confidence            34455777899999999999999999999999988887744    478888888876443

>CHL00176 ftsH cell division protein; Validated

Probab=98.45  E-value=2.7e-08  Score=104.69  Aligned_cols=79  Identities=27%  Similarity=0.315  Sum_probs=67.5

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      .++|+++++||+++.+|+||+|              ||||+ .|.++. +.++|.+||+.    ..+.+++++ +.+|+.
T Consensus       319 ~~~ViVIaaTN~~~~LD~ALlR--------------pGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l-~~lA~~  383 (638)
T CHL00176        319 NKGVIVIAATNRVDILDAALLR--------------PGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSL-ELIARR  383 (638)
T ss_pred             CCCeeEEEecCchHhhhhhhhc--------------cccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHH-HHHHhc
Confidence            4579999999999999999999              99999 555544 37899999986    346778899 889999


Q ss_pred             hcCCccccccccccccchhh
Q psy11689         83 EEGIAGENLQRGGGEEGIEL  102 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~  102 (390)
                      |.||+|+||..++.+++...
T Consensus       384 t~G~sgaDL~~lvneAal~a  403 (638)
T CHL00176        384 TPGFSGADLANLLNEAAILT  403 (638)
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999987753

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.45  E-value=8.1e-07  Score=79.08  Aligned_cols=58  Identities=19%  Similarity=0.182  Sum_probs=44.2

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh-cCc
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +...++|..+.|+++++||+.+.+|-.+.....+.+   .+.+...+..+|-+.-+.+ |++
T Consensus       141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr  202 (245)
T COG4555         141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR  202 (245)
T ss_pred             HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence            346778999999999999999999988776655544   4457778888888766653 444

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.45  E-value=1.2e-06  Score=75.27  Aligned_cols=56  Identities=20%  Similarity=0.174  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTA  279 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i  279 (390)
                      +..+.+.++|..++|.|+++||+.+.+|+.-..++.+.+   ...+++.+..+|.+.+.
T Consensus       146 qqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va  204 (242)
T COG4161         146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVA  204 (242)
T ss_pred             hhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHH
Confidence            444568889999999999999999999998777665544   44589999999976543

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.45  E-value=1.3e-06  Score=83.13  Aligned_cols=57  Identities=14%  Similarity=0.003  Sum_probs=44.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|++..+.. |++
T Consensus       146 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~  206 (275)
T PRK13639        146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADK  206 (275)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence            3666788889999999999999999988777665543   36788999999876653 444

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.44  E-value=4.2e-07  Score=88.47  Aligned_cols=101  Identities=22%  Similarity=0.330  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhH---HH
Q psy11689        151 GVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEA---EQ  224 (390)
Q Consensus       151 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~---~~  224 (390)
                      ...+.+..++.....+.+.|..    ...+++|+||+|+|||+|+.|+|+++   |..+++++..+++.......   ..
T Consensus       160 ~~~~~~~~~~~~~~~f~~~f~~----~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~  235 (329)
T PRK06835        160 SPRKNMEKILEKCKNFIENFDK----NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDK  235 (329)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccch
Confidence            3445555555544556666652    44889999999999999999999875   55666777666544332110   00


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQ  257 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~  257 (390)
                      .....+  ......++|+|||+...........
T Consensus       236 ~~~~~~--~~l~~~DLLIIDDlG~e~~t~~~~~  266 (329)
T PRK06835        236 ELEEVY--DLLINCDLLIIDDLGTEKITEFSKS  266 (329)
T ss_pred             hHHHHH--HHhccCCEEEEeccCCCCCCHHHHH
Confidence            111112  2334668999999988765544443

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.44  E-value=1.3e-06  Score=80.41  Aligned_cols=53  Identities=13%  Similarity=0.018  Sum_probs=41.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|....|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+.
T Consensus       133 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~  188 (223)
T TIGR03740       133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ  188 (223)
T ss_pred             HHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            4667888889999999999999999888777665533   3567788888865543

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.44  E-value=1.2e-06  Score=82.45  Aligned_cols=53  Identities=15%  Similarity=0.121  Sum_probs=41.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+.
T Consensus       146 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~  201 (256)
T TIGR03873       146 VHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA  201 (256)
T ss_pred             HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            3566788888999999999999999888776665543   3577888889876653

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.44  E-value=1.4e-06  Score=81.08  Aligned_cols=53  Identities=15%  Similarity=0.129  Sum_probs=40.8

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|....+.
T Consensus       145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~  200 (240)
T PRK09493        145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAE  200 (240)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            3566788889999999999999999888776665532   3577888888865543

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.44  E-value=7.7e-07  Score=102.61  Aligned_cols=62  Identities=13%  Similarity=0.073  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.||+|||+++.+|..++..+.+.+...  ..|.+.++||+.++..+++
T Consensus      1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~Dr 1420 (1490)
T TIGR01271      1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQ 1420 (1490)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence            3555668889999999999999999999999999888877653  6899999999988888776

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=1.3e-06  Score=80.94  Aligned_cols=53  Identities=13%  Similarity=0.099  Sum_probs=40.8

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+.
T Consensus       138 v~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~  194 (232)
T PRK10771        138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAA  194 (232)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence            3566788889999999999999999887766655533    2568888889876544

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.44  E-value=1.3e-06  Score=82.86  Aligned_cols=54  Identities=15%  Similarity=0.085  Sum_probs=42.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~  281 (390)
                      ..+++|...+|.|+++||+.+.+|........+.+..    .+.+.+..+|+...+..
T Consensus       158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~  215 (267)
T PRK15112        158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKH  215 (267)
T ss_pred             HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH
Confidence            4566788889999999999999999888776665543    26788899998766554

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.44  E-value=1.2e-06  Score=85.54  Aligned_cols=58  Identities=10%  Similarity=0.087  Sum_probs=46.0

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+++|...+|.+|++||+.+.+|......+.+.+..    .+.+.+.++|.+..+.. +++
T Consensus       169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dr  231 (331)
T PRK15079        169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDR  231 (331)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence            34666888899999999999999999888777665533    36789999999887764 554

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.44  E-value=1.4e-06  Score=81.22  Aligned_cols=52  Identities=19%  Similarity=0.134  Sum_probs=40.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA  279 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i  279 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+
T Consensus       154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~  209 (243)
T TIGR02315       154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA  209 (243)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            4666788889999999999999999888776665533    256788888886544

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=1.4e-06  Score=81.22  Aligned_cols=55  Identities=15%  Similarity=0.062  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      .+..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+.
T Consensus       138 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~  196 (241)
T PRK14250        138 QRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAK  196 (241)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence            334667888889999999999999999887776665543    3678888999875544

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.43  E-value=1.8e-06  Score=79.59  Aligned_cols=58  Identities=21%  Similarity=0.217  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcC
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~  283 (390)
                      .+-.+.+|...+|.++++||+.+.+|........+.+..  ...+.+..+|.+..+..++
T Consensus       157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d  216 (226)
T cd03248         157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERAD  216 (226)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCC
Confidence            334667888889999999999999999888776665543  2467788888876554443

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=1.4e-06  Score=83.24  Aligned_cols=57  Identities=7%  Similarity=-0.036  Sum_probs=44.0

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH-hcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD-TANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~-~t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+. .|++
T Consensus       150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dr  211 (283)
T PRK13636        150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDN  211 (283)
T ss_pred             HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence            3666788889999999999999999888766554432    2678899999987765 3554

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.43  E-value=1.5e-06  Score=82.44  Aligned_cols=53  Identities=9%  Similarity=-0.086  Sum_probs=41.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+...    +.+.+..+|.+..+.
T Consensus       152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~  208 (269)
T PRK11831        152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVL  208 (269)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence            45667888899999999999999998887766655432    578888999865443

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=1.4e-06  Score=87.10  Aligned_cols=54  Identities=20%  Similarity=0.076  Sum_probs=43.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~  281 (390)
                      ..+++|....|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+..
T Consensus       173 v~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~  230 (400)
T PRK10070        173 VGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMR  230 (400)
T ss_pred             HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence            4666888899999999999999999988777665543    36788999999866543

>PRK12377 putative replication protein; Provisional

Probab=98.43  E-value=4.6e-07  Score=84.76  Aligned_cols=80  Identities=16%  Similarity=0.253  Sum_probs=51.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHH--HHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAE--QNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~--~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      ..+++|+||||||||+|+.++|+.+   +..++.+..++++......-.  .....++..  ....++|+|||+...-..
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~--l~~~dLLiIDDlg~~~~s  178 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQRET  178 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCCCCC
Confidence            4689999999999999999999876   345555655555443211100  011122222  357789999999876555


Q ss_pred             hhHHHHH
Q psy11689        253 EYREQTA  259 (390)
Q Consensus       253 r~~~~~~  259 (390)
                      .......
T Consensus       179 ~~~~~~l  185 (248)
T PRK12377        179 KNEQVVL  185 (248)
T ss_pred             HHHHHHH
Confidence            5444433

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.42  E-value=1.5e-06  Score=80.67  Aligned_cols=55  Identities=20%  Similarity=0.149  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      .+..+++|...+|.++++||+.+.+|..+.......+..    .+.+.+..+|.+..+.
T Consensus       136 qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~  194 (235)
T cd03299         136 QRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAW  194 (235)
T ss_pred             HHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            335667888889999999999999999888777665543    2678888888875544

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.42  E-value=1.3e-06  Score=76.51  Aligned_cols=55  Identities=13%  Similarity=0.094  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHHH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQT  278 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~~  278 (390)
                      +..+.+++++......|+++||+.+.+|+.-..+....+    .....|.+.++|.+.-
T Consensus       134 qRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D  192 (231)
T COG3840         134 QRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED  192 (231)
T ss_pred             HHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence            455567888888888899999999999998777765544    3347888899987643

>PLN03232 ABC transporter C family member; Provisional

Probab=98.42  E-value=1.1e-06  Score=101.30  Aligned_cols=113  Identities=18%  Similarity=0.148  Sum_probs=81.2

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc---hhc-------------------------------------cc-
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR---VLA-------------------------------------AS-  210 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~---~~~-------------------------------------i~-  210 (390)
                      ++.+++|+.+.++||+|||||||+++++++....   ...                                     +. 
T Consensus       637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~  716 (1495)
T PLN03232        637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDV  716 (1495)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHH
Confidence            5678899999999999999999999999442100   000                                     00 


Q ss_pred             ---------cccccCcchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEe
Q psy11689        211 ---------AAQLYSPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNG  272 (390)
Q Consensus       211 ---------~~~~~~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~  272 (390)
                               .++.....+|+      +.|+.+-.+++|...+|.|+++||+.+.+|...+....+....   ...|.+.+
T Consensus       717 ~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~Ilv  796 (1495)
T PLN03232        717 TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLV  796 (1495)
T ss_pred             hCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEE
Confidence                     00000111222      3467778999999999999999999999999988877655422   46789999


Q ss_pred             ccCHHHHHhcCc
Q psy11689        273 GYREQTADTANK  284 (390)
Q Consensus       273 ~~~~~~i~~t~~  284 (390)
                      +|++..+..+++
T Consensus       797 TH~~~~l~~aD~  808 (1495)
T PLN03232        797 TNQLHFLPLMDR  808 (1495)
T ss_pred             ECChhhHHhCCE
Confidence            999988776665

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.41  E-value=7.6e-06  Score=77.25  Aligned_cols=47  Identities=15%  Similarity=0.075  Sum_probs=39.5

Q ss_pred             CCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHH
Q psy11689        322 ANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQ  371 (390)
Q Consensus       322 vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~  371 (390)
                      -.+..|.+.+.|+-  . .|..++..+...|..++...|+.+++..++-.
T Consensus       219 ~~~~~i~~~s~G~p--~-~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~  265 (269)
T TIGR03015       219 GAFDAIHRFSRGIP--R-LINILCDRLLLSAFLEEKREIGGEEVREVIAE  265 (269)
T ss_pred             HHHHHHHHHcCCcc--c-HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            34567789999985  4 49999999999999999999999999988743

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG0060|consensus

Probab=98.41  E-value=8e-07  Score=89.92  Aligned_cols=53  Identities=15%  Similarity=0.160  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYRE  276 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~  276 (390)
                      +..+..|++...++|.+.|+||.++.++...+...-+.....++|.+.++||.
T Consensus       575 EqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRk  627 (659)
T KOG0060|consen  575 EQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRK  627 (659)
T ss_pred             HHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHH
Confidence            44567899999999999999999999999999988899999999999999984

>PRK08181 transposase; Validated

Probab=98.41  E-value=3e-07  Score=87.04  Aligned_cols=78  Identities=22%  Similarity=0.353  Sum_probs=52.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhH-HHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEA-EQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~-~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      .+.+++|+||||||||+|+.+++.++   |..+++++.++++....... .....+.+..  ..++++|+|||+......
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~--l~~~dLLIIDDlg~~~~~  182 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVTKD  182 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH--HhcCCEEEEeccccccCC
Confidence            56789999999999999999998653   56677777666654432111 1122233333  356789999999887654


Q ss_pred             hhHH
Q psy11689        253 EYRE  256 (390)
Q Consensus       253 r~~~  256 (390)
                      ....
T Consensus       183 ~~~~  186 (269)
T PRK08181        183 QAET  186 (269)
T ss_pred             HHHH
Confidence            4433

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.41  E-value=1.7e-06  Score=85.48  Aligned_cols=57  Identities=19%  Similarity=0.153  Sum_probs=44.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+.. +++
T Consensus       140 valAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~  201 (354)
T TIGR02142       140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADR  201 (354)
T ss_pred             HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence            4666888889999999999999999988777665543    26788999999876544 443

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.41  E-value=5e-07  Score=84.32  Aligned_cols=79  Identities=24%  Similarity=0.347  Sum_probs=52.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhh---HHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGE---AEQNVTQLFHRARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~---~~~~i~~~f~~A~~~~p~il~lDEid~~l~  251 (390)
                      ..+++|+|+||||||+|+.++|.++   +..++.++.++++......   .......++..  ....++|+|||++....
T Consensus        99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~--l~~~dlLvIDDig~~~~  176 (244)
T PRK07952         99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLND--LSNVDLLVIDEIGVQTE  176 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHH--hccCCEEEEeCCCCCCC
Confidence            3589999999999999999999886   4566666666655432211   11122234443  34688999999998765


Q ss_pred             hhhHHHH
Q psy11689        252 CEYREQT  258 (390)
Q Consensus       252 ~r~~~~~  258 (390)
                      .......
T Consensus       177 s~~~~~~  183 (244)
T PRK07952        177 SRYEKVI  183 (244)
T ss_pred             CHHHHHH
Confidence            5544433

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=1.9e-06  Score=82.64  Aligned_cols=58  Identities=14%  Similarity=0.115  Sum_probs=44.5

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH-hcCc
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD-TANK  284 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~-~t~~  284 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+. .|++
T Consensus       152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr  214 (287)
T PRK13637        152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADR  214 (287)
T ss_pred             HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            34666788889999999999999999888777665532    2678899999976654 3554

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=2.5e-06  Score=79.59  Aligned_cols=53  Identities=19%  Similarity=0.191  Sum_probs=41.0

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..   .+.+.+..+|....+.
T Consensus       150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~  205 (242)
T PRK11124        150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVAR  205 (242)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            3566788889999999999999999887776665543   3677888888875543

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.40  E-value=1.5e-06  Score=79.68  Aligned_cols=113  Identities=15%  Similarity=0.207  Sum_probs=76.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc------------chhcccc---ccc-----------c----------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY------------RVLAASA---AQL-----------Y----------  215 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~------------~~~~i~~---~~~-----------~----------  215 (390)
                      ++.+..+..+-|.|++|+|||||.+.||.-...            +++.+..   +++           +          
T Consensus        47 sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~  126 (249)
T COG1134          47 SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE  126 (249)
T ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHH
Confidence            567889999999999999999999999932110            0000000   000           0          


Q ss_pred             -----------Ccch------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccC
Q psy11689        216 -----------SPYV------GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYR  275 (390)
Q Consensus       216 -----------~~~~------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~  275 (390)
                                 +.+.      -.+....+..|+-|....|.|+++||+-+..|..+.......+   .....+.+.++|.
T Consensus       127 ~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd  206 (249)
T COG1134         127 KVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD  206 (249)
T ss_pred             HHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence                       0000      0123445678889999999999999999999998876554433   3345888999999


Q ss_pred             HHHHHh-cCc
Q psy11689        276 EQTADT-ANK  284 (390)
Q Consensus       276 ~~~i~~-t~~  284 (390)
                      ...+.. ||+
T Consensus       207 ~~~I~~~Cd~  216 (249)
T COG1134         207 LGAIKQYCDR  216 (249)
T ss_pred             HHHHHHhcCe
Confidence            876654 555

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2.4e-06  Score=79.63  Aligned_cols=53  Identities=11%  Similarity=-0.040  Sum_probs=40.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+   ...+.+.+..+|....+.
T Consensus       146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~  201 (241)
T PRK10895        146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETL  201 (241)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHH
Confidence            46668888899999999999999998776554433   334677888889864443

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.40  E-value=7.8e-07  Score=82.02  Aligned_cols=129  Identities=18%  Similarity=0.227  Sum_probs=80.4

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhh
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGE  221 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~  221 (390)
                      ++.|++.+++.+.+....++.         -.+..++||+|+.|||||++++++..+..   +.++.+...++       
T Consensus        28 ~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L-------   91 (249)
T PF05673_consen   28 DLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL-------   91 (249)
T ss_pred             HhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh-------
Confidence            999999999999877754322         14678899999999999999999997654   44444444332       


Q ss_pred             HHHHHHHHHHHHH-hcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHHHh
Q psy11689        222 AEQNVTQLFHRAR-LAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREY  294 (390)
Q Consensus       222 ~~~~i~~~f~~A~-~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~  294 (390)
                        ..+..++...+ ...+-|||+|++. +-.....-.....+..-.+...  -.++.+-+|+||+.+.......
T Consensus        92 --~~l~~l~~~l~~~~~kFIlf~DDLs-Fe~~d~~yk~LKs~LeGgle~~--P~NvliyATSNRRHLv~E~~~d  160 (249)
T PF05673_consen   92 --GDLPELLDLLRDRPYKFILFCDDLS-FEEGDTEYKALKSVLEGGLEAR--PDNVLIYATSNRRHLVPESFSD  160 (249)
T ss_pred             --ccHHHHHHHHhcCCCCEEEEecCCC-CCCCcHHHHHHHHHhcCccccC--CCcEEEEEecchhhccchhhhh
Confidence              23455666554 3345699999865 2222223333344433333211  2334456778887776544433

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.40  E-value=2.4e-06  Score=80.59  Aligned_cols=52  Identities=13%  Similarity=0.067  Sum_probs=39.3

Q ss_pred             HHHHHHh------cCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCcEEEeccCHHHHH
Q psy11689        229 LFHRARL------AAPAILFIDEIERTYNCEYREQTADNAK----KPRIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~------~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~~i~~~~~~~~i~  280 (390)
                      .+.+|..      ..|.++++||+.+.+|........+.+.    ..+.+.+..+|.+..+.
T Consensus       144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  205 (258)
T PRK13548        144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAA  205 (258)
T ss_pred             HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence            5556776      4899999999999999988776665553    33577888888875554

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.39  E-value=2.2e-06  Score=79.75  Aligned_cols=52  Identities=17%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---C-CCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---P-RIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~-~~~~i~~~~~~~~i~  280 (390)
                      .+.+|...+|.++++||+.+-+|........+.+..   . ..+.+..+|+...+.
T Consensus       140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~  195 (237)
T TIGR00968       140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAM  195 (237)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            555777788999999999999999988777666543   2 578888888875543

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.39  E-value=3.3e-06  Score=76.58  Aligned_cols=112  Identities=18%  Similarity=0.155  Sum_probs=72.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----------cchh---------------cccc---c----c-----
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----------YRVL---------------AASA---A----Q-----  213 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----------~~~~---------------~i~~---~----~-----  213 (390)
                      ++.+.++..+.|.||+|+|||||+++++....           +.++               ....   .    +     
T Consensus        25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~  104 (204)
T cd03250          25 NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC  104 (204)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHc
Confidence            45678999999999999999999999994421           0000               0000   0    0     


Q ss_pred             -c---c-----------Ccch--hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHH-h---hcCCCcEEEe
Q psy11689        214 -L---Y-----------SPYV--GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADN-A---KKPRIPRTNG  272 (390)
Q Consensus       214 -~---~-----------~~~~--g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~-~---~~~~~~~i~~  272 (390)
                       +   +           ....  -...+..+..+++|...+|.++++||+.+.+|........+. +   .....+.+..
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~  184 (204)
T cd03250         105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV  184 (204)
T ss_pred             CcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence             0   0           0000  012234455777888999999999999999999877666553 2   2235778888


Q ss_pred             ccCHHHHHhcC
Q psy11689        273 GYREQTADTAN  283 (390)
Q Consensus       273 ~~~~~~i~~t~  283 (390)
                      +|+...+..++
T Consensus       185 sh~~~~~~~~d  195 (204)
T cd03250         185 THQLQLLPHAD  195 (204)
T ss_pred             eCCHHHHhhCC
Confidence            88876555443

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=2e-06  Score=82.24  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=43.6

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcCc
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+..+++
T Consensus       153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~  212 (282)
T PRK13640        153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQ  212 (282)
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence            555788889999999999999999888777665533    26788899998766655544

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.39  E-value=2.4e-06  Score=78.50  Aligned_cols=56  Identities=14%  Similarity=0.130  Sum_probs=42.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHhcC
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~t~  283 (390)
                      ..+.+|...+|.++++||+.+.+|..........+..    ...+.+..+|.......++
T Consensus       150 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d  209 (220)
T TIGR02982       150 VAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVAD  209 (220)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCC
Confidence            3566788889999999999999999887766655533    3678888999875443333

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.39  E-value=2.2e-06  Score=80.75  Aligned_cols=61  Identities=16%  Similarity=0.058  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|........+.+..  ...+.+..+|++..+..+++
T Consensus       161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dr  223 (257)
T cd03288         161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADL  223 (257)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCE
Confidence            34456778889999999999999999999887766655543  35677888888765554443

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.38  E-value=4.8e-07  Score=83.27  Aligned_cols=77  Identities=25%  Similarity=0.418  Sum_probs=50.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhc-----cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSV-----YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~-----~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      ..+.||||+|+|||+|+.+++++..     ..+++++..++...+.......-..-|... ....++|+||+++.+.+..
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~DlL~iDDi~~l~~~~  113 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDR-LRSADLLIIDDIQFLAGKQ  113 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHH-HCTSSEEEEETGGGGTTHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhh-hhcCCEEEEecchhhcCch
Confidence            4589999999999999999997743     445666666655443332221111223322 3366899999999998875


Q ss_pred             hHH
Q psy11689        254 YRE  256 (390)
Q Consensus       254 ~~~  256 (390)
                      ..+
T Consensus       114 ~~q  116 (219)
T PF00308_consen  114 RTQ  116 (219)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK06526 transposase; Provisional

Probab=98.37  E-value=5.8e-07  Score=84.49  Aligned_cols=76  Identities=25%  Similarity=0.305  Sum_probs=49.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhH-HHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEA-EQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~-~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      .+.+++|+||||||||+|+.+++.++   |..+..+...+++....... .......+..  ...+++|+|||++..-..
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~~~  174 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIPFE  174 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCCCC
Confidence            56789999999999999999998664   55665665555443322110 0112222222  346789999999987544


Q ss_pred             hh
Q psy11689        253 EY  254 (390)
Q Consensus       253 r~  254 (390)
                      ..
T Consensus       175 ~~  176 (254)
T PRK06526        175 PE  176 (254)
T ss_pred             HH
Confidence            33

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.37  E-value=3.1e-06  Score=89.07  Aligned_cols=118  Identities=14%  Similarity=0.186  Sum_probs=72.1

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhc-----
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA-----  208 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~-----  208 (390)
                      |..+|....|++|.|.+.+++.|...+...            ..+..+|||||+|+|||++++++|+...+....     
T Consensus         7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~   74 (614)
T PRK14971          7 SARKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA   74 (614)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence            344555666679999999999998887531            245669999999999999999999876532100     


Q ss_pred             ---------ccc---ccc--cCcchhhHHHHHHHHHHHHHhc----CCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        209 ---------ASA---AQL--YSPYVGEAEQNVTQLFHRARLA----APAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       209 ---------i~~---~~~--~~~~~g~~~~~i~~~f~~A~~~----~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                               +..   .++  +..........++.+...+...    ...|+||||++.+-. ...+.....+..
T Consensus        75 Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-~a~naLLK~LEe  147 (614)
T PRK14971         75 CNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-AAFNAFLKTLEE  147 (614)
T ss_pred             CCcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-HHHHHHHHHHhC
Confidence                     000   000  0000011124455565555322    345999999998743 233344445444

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.37  E-value=2.4e-06  Score=78.12  Aligned_cols=52  Identities=25%  Similarity=0.210  Sum_probs=40.8

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      .+.+|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+.
T Consensus       141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  196 (214)
T cd03297         141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAE  196 (214)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHH
Confidence            555778888999999999999999888777665543    2567888899876554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=2.4e-06  Score=80.26  Aligned_cols=53  Identities=13%  Similarity=0.060  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+.
T Consensus       162 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~  218 (255)
T PRK11300        162 LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVM  218 (255)
T ss_pred             HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence            3566788889999999999999999888777665543    2578888999875553

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.37  E-value=9.4e-07  Score=92.97  Aligned_cols=120  Identities=18%  Similarity=0.170  Sum_probs=77.5

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhc----
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA----  208 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~----  208 (390)
                      .|..++....|+++.|.+.+++.|...+...            .-+..+||+||+|+|||++|+++|+.+.+....    
T Consensus         5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~   72 (620)
T PRK14948          5 PLHHKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP   72 (620)
T ss_pred             hHHHHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC
Confidence            3555666677779999999999998888641            134579999999999999999999887652110    


Q ss_pred             ccc--------------cccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhcC
Q psy11689        209 ASA--------------AQLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKKP  265 (390)
Q Consensus       209 i~~--------------~~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~~  265 (390)
                      -.|              .++.  ..........++.+...+..    ....|+||||++.+- ....+.....+...
T Consensus        73 ~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-~~a~naLLK~LEeP  148 (620)
T PRK14948         73 EPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-TAAFNALLKTLEEP  148 (620)
T ss_pred             CCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-HHHHHHHHHHHhcC
Confidence            000              0110  11112234567777766643    234699999999863 33344445555543

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=2.4e-06  Score=81.88  Aligned_cols=57  Identities=11%  Similarity=-0.027  Sum_probs=43.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH-hcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD-TANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~-~t~~  284 (390)
                      ..+++|...+|.|+++||+.+.+|........+.+.   ..+.+.+..+|.+..+. .+++
T Consensus       153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dr  213 (288)
T PRK13643        153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADY  213 (288)
T ss_pred             HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence            466678888999999999999999988776665543   23678899999876554 3444

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.37  E-value=2.9e-06  Score=78.19  Aligned_cols=53  Identities=19%  Similarity=0.074  Sum_probs=41.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~  280 (390)
                      ..+++|....|.++++||+.+.+|........+.+...    +.+.+..+|.+..+.
T Consensus       154 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  210 (228)
T cd03257         154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVA  210 (228)
T ss_pred             HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            35567788889999999999999998887776655332    578888999876554

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.36  E-value=2.4e-06  Score=80.82  Aligned_cols=53  Identities=9%  Similarity=-0.066  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+.
T Consensus       152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~  208 (265)
T PRK10253        152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQAC  208 (265)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            4667888899999999999999999888777665533    2567888888875443

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=2.4e-06  Score=81.79  Aligned_cols=57  Identities=12%  Similarity=0.019  Sum_probs=44.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH-hcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD-TANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~-~t~~  284 (390)
                      ..+++|...+|.|+++||+.+.+|........+.+..    .+.+.+..+|.+..+. .+++
T Consensus       154 v~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dr  215 (286)
T PRK13646        154 IAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADE  215 (286)
T ss_pred             HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence            4566788889999999999999999988877665543    3688899999986654 3444

>PRK09183 transposase/IS protein; Provisional

Probab=98.36  E-value=6.8e-07  Score=84.36  Aligned_cols=78  Identities=28%  Similarity=0.376  Sum_probs=50.9

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhh-HHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGE-AEQNVTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~-~~~~i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                      +..+.+++|+||||||||+|+.+++...   |..+.+++..++...+... ....+...|... ...+++++|||+...-
T Consensus        99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~  177 (259)
T PRK09183         99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP  177 (259)
T ss_pred             hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence            3567899999999999999999997653   4555555555544332211 111233455443 4577899999998764


Q ss_pred             Chh
Q psy11689        251 NCE  253 (390)
Q Consensus       251 ~~r  253 (390)
                      ..+
T Consensus       178 ~~~  180 (259)
T PRK09183        178 FSQ  180 (259)
T ss_pred             CCh
Confidence            433

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=2.7e-06  Score=80.04  Aligned_cols=53  Identities=6%  Similarity=-0.023  Sum_probs=41.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   ...+.+..+|.+..+.
T Consensus       147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~  202 (255)
T PRK11231        147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQAS  202 (255)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            3566788889999999999999999888777665533   3577888888875543

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.35  E-value=3.3e-06  Score=79.08  Aligned_cols=53  Identities=13%  Similarity=0.104  Sum_probs=40.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+.   ..+.+.+..+|....+.
T Consensus       153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~  208 (250)
T PRK11264        153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFAR  208 (250)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            355677888999999999999999988877765443   23677888888865443

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.35  E-value=3.1e-06  Score=80.50  Aligned_cols=53  Identities=8%  Similarity=0.014  Sum_probs=41.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+.
T Consensus       151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~  206 (272)
T PRK15056        151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVT  206 (272)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            3566788889999999999999999888777665533   3677888999875543

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.35  E-value=3.1e-06  Score=80.10  Aligned_cols=53  Identities=11%  Similarity=0.011  Sum_probs=41.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|....|.++++||+.+.+|........+.+..    .+.+.+..+|....+.
T Consensus       159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~  215 (265)
T TIGR02769       159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQ  215 (265)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence            3566788889999999999999999887766665543    2678888999875554

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.35  E-value=3.5e-06  Score=77.17  Aligned_cols=109  Identities=12%  Similarity=0.043  Sum_probs=68.0

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhcccc--------ccccCcc------------hh--------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASA--------AQLYSPY------------VG--------  220 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~--------~~~~~~~------------~g--------  220 (390)
                      ++.+.++..+.|.||+|+|||||+++++....   ..+..+..        +.++...            .+        
T Consensus         7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~   86 (213)
T PRK15177          7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSH   86 (213)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHH
Confidence            45678899999999999999999999994321   00000000        0000000            00        


Q ss_pred             -------------------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHH
Q psy11689        221 -------------------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTA  279 (390)
Q Consensus       221 -------------------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i  279 (390)
                                         ...+..+-.+++|...+|.++++||+...++..........+..  ...+.+..+|.+..+
T Consensus        87 ~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~  166 (213)
T PRK15177         87 FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLI  166 (213)
T ss_pred             HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence                               01122234667888889999999999888888776665554421  234678888887665


Q ss_pred             H
Q psy11689        280 D  280 (390)
Q Consensus       280 ~  280 (390)
                      .
T Consensus       167 ~  167 (213)
T PRK15177        167 K  167 (213)
T ss_pred             H
Confidence            4

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.35  E-value=5.3e-06  Score=76.46  Aligned_cols=54  Identities=17%  Similarity=0.065  Sum_probs=42.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..   .+.+.+..+|....+..
T Consensus       122 v~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~  178 (223)
T TIGR03771       122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMA  178 (223)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            3566788889999999999999999888777665543   36788889998765543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=2.3e-06  Score=79.55  Aligned_cols=52  Identities=17%  Similarity=0.112  Sum_probs=39.8

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTA  279 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i  279 (390)
                      ..+++|...+|.|+++||+.+.+|........+.+.   ..+.+.+..+|.+..+
T Consensus       146 l~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~  200 (237)
T PRK11614        146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQA  200 (237)
T ss_pred             HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence            355577788899999999999999988777665543   3367788888886543

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.34  E-value=1.2e-07  Score=91.52  Aligned_cols=107  Identities=15%  Similarity=0.114  Sum_probs=65.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc--chhhHH------HH----HHHHHHHHHhcCCeEEEEc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP--YVGEAE------QN----VTQLFHRARLAAPAILFID  244 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~--~~g~~~------~~----i~~~f~~A~~~~p~il~lD  244 (390)
                      .+++++|.||||||||++++.+|..++.+++.+++......  +.|...      ..    ..-.+..|. ..+.++++|
T Consensus        63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD  141 (327)
T TIGR01650        63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD  141 (327)
T ss_pred             cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence            46789999999999999999999999999998877655433  333211      00    111334444 356889999


Q ss_pred             CCCCCCChhhHHHHHHHhhcC------CCcEEEeccCH-HHHHhcCch
Q psy11689        245 EIERTYNCEYREQTADNAKKP------RIPRTNGGYRE-QTADTANKP  285 (390)
Q Consensus       245 Eid~~l~~r~~~~~~~~~~~~------~~~~i~~~~~~-~~i~~t~~~  285 (390)
                      |+++. .+.........+...      ........|.. .+++|.|..
T Consensus       142 Ein~a-~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~  188 (327)
T TIGR01650       142 EYDAG-RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI  188 (327)
T ss_pred             hhhcc-CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence            99976 443333332333211      22233334533 357777753

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=3.1e-06  Score=81.23  Aligned_cols=57  Identities=14%  Similarity=0.089  Sum_probs=43.9

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+.. +++
T Consensus       154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~dr  215 (290)
T PRK13634        154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQ  215 (290)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            3566788889999999999999999888776665533    36788999999876543 443

>PRK09087 hypothetical protein; Validated

Probab=98.33  E-value=4.8e-06  Score=77.01  Aligned_cols=172  Identities=12%  Similarity=0.017  Sum_probs=81.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh-HH
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY-RE  256 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~-~~  256 (390)
                      ...++|+||+|+|||+|+++++...+..+  ++...+..           ..+....   ..+|++||++.+-.... --
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~~---~~~l~iDDi~~~~~~~~~lf  107 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAAA---EGPVLIEDIDAGGFDETGLF  107 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhhh---cCeEEEECCCCCCCCHHHHH
Confidence            34599999999999999999998765443  22221111           1111111   15899999997632211 11


Q ss_pred             HHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhH---HHhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCC
Q psy11689        257 QTADNAKKPRIPRTNGGYREQTADTANKPRIQRTK---REYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRG  333 (390)
Q Consensus       257 ~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~---~~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~g  333 (390)
                      .........+...+..++....-.....+++.-.+   ....-..++...+..++......+....++--+..|+++..|
T Consensus       108 ~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r  187 (226)
T PRK09087        108 HLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER  187 (226)
T ss_pred             HHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence            12222233344445444432111111123332111   111111233455555543222223333343445566766542


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689        334 YREYSAQNANTANKPRIQRTKREYREQTADTANKPR  369 (390)
Q Consensus       334 fs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~  369 (390)
                       +  -+.+..++.+-...+...+ +.+|...+++..
T Consensus       188 -~--~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l  219 (226)
T PRK09087        188 -S--LFAAQTIVDRLDRLALERK-SRITRALAAEVL  219 (226)
T ss_pred             -h--HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence             2  4445554545444443433 557766665554

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.33  E-value=3e-06  Score=82.69  Aligned_cols=57  Identities=14%  Similarity=0.072  Sum_probs=45.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|...+|.+|++||+.+.+|......+.+.+..    .+.+.+.++|.+..+.. +++
T Consensus       162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adr  223 (326)
T PRK11022        162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHK  223 (326)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            3566788889999999999999999988877665543    36789999999887653 554

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.33  E-value=4e-06  Score=78.15  Aligned_cols=53  Identities=17%  Similarity=0.057  Sum_probs=41.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|..+.....+.+..  ...+.+..+|....+.
T Consensus       152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~  206 (242)
T TIGR03411       152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVR  206 (242)
T ss_pred             HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence            4666888889999999999999999988777665543  2467888888876554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.33  E-value=2.9e-06  Score=87.89  Aligned_cols=60  Identities=12%  Similarity=0.059  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+..+++|....|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+.. |++
T Consensus       146 ~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~  209 (510)
T PRK15439        146 RQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADR  209 (510)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence            3345777888999999999999999999888777665533   36788899998876543 443

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=3.4e-06  Score=87.81  Aligned_cols=109  Identities=19%  Similarity=0.169  Sum_probs=74.8

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c---------cchhc----------cccccccC------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V---------YRVLA----------ASAAQLYS------------  216 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~---------~~~~~----------i~~~~~~~------------  216 (390)
                      ++.+.++..+.|.||+|+|||||+++++...    |         +.++.          ....+.+.            
T Consensus       339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~  418 (530)
T PRK15064        339 NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAV  418 (530)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHH
Confidence            5677889999999999999999999999431    1         00000          00000000            


Q ss_pred             ---------------cchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHH
Q psy11689        217 ---------------PYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTA  279 (390)
Q Consensus       217 ---------------~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i  279 (390)
                                     ...+  ...+..+..+++|...+|.++++||+.+.+|........+.+.....+.+.++|....+
T Consensus       419 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~  498 (530)
T PRK15064        419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFV  498 (530)
T ss_pred             HHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence                           0000  01233445777888899999999999999999998888887777666888899987554


Q ss_pred             H
Q psy11689        280 D  280 (390)
Q Consensus       280 ~  280 (390)
                      .
T Consensus       499 ~  499 (530)
T PRK15064        499 S  499 (530)
T ss_pred             H
Confidence            4

>KOG0062|consensus

Probab=98.32  E-value=2.2e-06  Score=85.67  Aligned_cols=109  Identities=20%  Similarity=0.248  Sum_probs=77.3

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHh--hccch-------------------------hc----ccc----ccccC
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH--SVYRV-------------------------LA----ASA----AQLYS  216 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~--~~~~~-------------------------~~----i~~----~~~~~  216 (390)
                      ++.+..|+..-|+|++|+|||||.++||..  .++++                         +.    +..    .++..
T Consensus       100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~  179 (582)
T KOG0062|consen  100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYD  179 (582)
T ss_pred             ceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHH
Confidence            566778999999999999999999999951  01111                         00    000    00000


Q ss_pred             ----c--c----------hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689        217 ----P--Y----------VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       217 ----~--~----------~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~  280 (390)
                          +  +          .-.+...++..+++|...+|++++|||+...+|-..-......+....+|.+.++|.-..+.
T Consensus       180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn  259 (582)
T KOG0062|consen  180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLN  259 (582)
T ss_pred             HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHH
Confidence                0  0          00122445678889999999999999999999999888888888888889999998765533

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.32  E-value=3.7e-06  Score=80.67  Aligned_cols=53  Identities=8%  Similarity=-0.128  Sum_probs=41.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    .+.+.+.++|.+..+.
T Consensus       159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~  215 (289)
T PRK13645        159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVL  215 (289)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            3556778888999999999999999888776655432    2678889999876544

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.31  E-value=4.5e-06  Score=75.65  Aligned_cols=103  Identities=11%  Similarity=0.173  Sum_probs=60.2

Q ss_pred             hcCCCCC-ceEEEEcCCCChHHHHHHHHHH-----hhccchh-----ccc-ccccc---------Ccchh---hHHHHHH
Q psy11689        172 RLAIPKP-KGILLYGPPGCAKTSLVRTLAA-----HSVYRVL-----AAS-AAQLY---------SPYVG---EAEQNVT  227 (390)
Q Consensus       172 ~~~~~~~-~~vLl~GppGtGKT~La~aia~-----~~~~~~~-----~i~-~~~~~---------~~~~g---~~~~~i~  227 (390)
                      ++.+.++ +.++|+||+|+|||||.+.++.     +.|..+-     .+. ..+.+         .....   ...+.+.
T Consensus        21 ~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~  100 (200)
T cd03280          21 DIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIA  100 (200)
T ss_pred             eEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHH
Confidence            3445666 4699999999999999999982     2231110     111 11111         11111   1112222


Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHH----HHhhcCCCcEEEeccCH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTA----DNAKKPRIPRTNGGYRE  276 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~----~~~~~~~~~~i~~~~~~  276 (390)
                      .++..  ..+|+++++||+.+.++........    ..+.....+.+..+|..
T Consensus       101 ~i~~~--~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~  151 (200)
T cd03280         101 RILQH--ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG  151 (200)
T ss_pred             HHHHh--CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH
Confidence            33322  4689999999999999988765543    23333456777788754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.31  E-value=3.2e-06  Score=86.47  Aligned_cols=113  Identities=15%  Similarity=0.143  Sum_probs=74.8

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc----------c-hhcc--------cccccc------Ccc--------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY----------R-VLAA--------SAAQLY------SPY--------  218 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~----------~-~~~i--------~~~~~~------~~~--------  218 (390)
                      ++.+.++..+.|.||+|+|||||+++++.....          + .+..        ...+.+      ..+        
T Consensus        44 SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~  123 (549)
T PRK13545         44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI  123 (549)
T ss_pred             EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH
Confidence            456789999999999999999999999954210          0 0000        000000      000        


Q ss_pred             -----------------hh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCH
Q psy11689        219 -----------------VG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYRE  276 (390)
Q Consensus       219 -----------------~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~  276 (390)
                                       .+  ...+..+..+++|....|.++++||+.+.+|........+.+.   ..+.+.+..+|.+
T Consensus       124 i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl  203 (549)
T PRK13545        124 IPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL  203 (549)
T ss_pred             HHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence                             00  0123334577788899999999999999999988777666553   3367888999998


Q ss_pred             HHHHh-cCc
Q psy11689        277 QTADT-ANK  284 (390)
Q Consensus       277 ~~i~~-t~~  284 (390)
                      ..+.. |++
T Consensus       204 ~~i~~l~Dr  212 (549)
T PRK13545        204 SQVKSFCTK  212 (549)
T ss_pred             HHHHHhCCE
Confidence            76543 443

>PRK06921 hypothetical protein; Provisional

Probab=98.31  E-value=1.1e-06  Score=83.12  Aligned_cols=81  Identities=23%  Similarity=0.404  Sum_probs=48.7

Q ss_pred             cCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeE
Q psy11689        165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI  240 (390)
Q Consensus       165 ~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~i  240 (390)
                      .+.+.|....-..+.+++|+||||+|||+|+.++|+++    +..++++...+++...... .......+.  .....++
T Consensus       104 ~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~--~~~~~dl  180 (266)
T PRK06921        104 EYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLN--RMKKVEV  180 (266)
T ss_pred             HHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHH--HhcCCCE
Confidence            33444443222346789999999999999999999875    4555555554443321111 011111222  2346789


Q ss_pred             EEEcCCCC
Q psy11689        241 LFIDEIER  248 (390)
Q Consensus       241 l~lDEid~  248 (390)
                      |+|||+..
T Consensus       181 LiIDDl~~  188 (266)
T PRK06921        181 LFIDDLFK  188 (266)
T ss_pred             EEEecccc
Confidence            99999954

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.31  E-value=3.9e-06  Score=77.41  Aligned_cols=49  Identities=10%  Similarity=-0.061  Sum_probs=38.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYRE  276 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~  276 (390)
                      ..+.+|....|.++++||+.+.+|........+.+..   ...+.+..+|..
T Consensus       152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~  203 (226)
T cd03234         152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP  203 (226)
T ss_pred             HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            3566778888999999999999999888777665532   356778888875

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.31  E-value=1.6e-06  Score=73.15  Aligned_cols=27  Identities=33%  Similarity=0.589  Sum_probs=25.0

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHH
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLA  199 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia  199 (390)
                      +.+.++..+.|.||+|+|||||+++++
T Consensus         6 ~~i~~g~~~~i~G~nGsGKStLl~~l~   32 (137)
T PF00005_consen    6 LEIKPGEIVAIVGPNGSGKSTLLKALA   32 (137)
T ss_dssp             EEEETTSEEEEEESTTSSHHHHHHHHT
T ss_pred             EEEcCCCEEEEEccCCCccccceeeec
Confidence            456789999999999999999999999

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.31  E-value=5.9e-06  Score=78.98  Aligned_cols=109  Identities=15%  Similarity=0.099  Sum_probs=71.2

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chh---------------cccc-------c------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVL---------------AASA-------A------  212 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~---------------~i~~-------~------  212 (390)
                      ++.+.++..+.|.||+|+|||||+++|+.....           .++               ....       .      
T Consensus        57 s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~  136 (282)
T cd03291          57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKAC  136 (282)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHh
Confidence            456789999999999999999999999954210           000               0000       0      


Q ss_pred             cc---cCcc-------------hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEec
Q psy11689        213 QL---YSPY-------------VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGG  273 (390)
Q Consensus       213 ~~---~~~~-------------~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~  273 (390)
                      .+   +..+             .-...+..+..+++|...+|.++++||+.+.+|..........+   .....+.+..+
T Consensus       137 ~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiis  216 (282)
T cd03291         137 QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT  216 (282)
T ss_pred             CCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence            00   0000             00123445567888999999999999999999998777655432   12356778888


Q ss_pred             cCHHHHH
Q psy11689        274 YREQTAD  280 (390)
Q Consensus       274 ~~~~~i~  280 (390)
                      |....+.
T Consensus       217 H~~~~~~  223 (282)
T cd03291         217 SKMEHLK  223 (282)
T ss_pred             CChHHHH
Confidence            8765444

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.30  E-value=5.9e-06  Score=75.77  Aligned_cols=54  Identities=11%  Similarity=0.035  Sum_probs=40.0

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH-----HhhcCCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTAD-----NAKKPRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~-----~~~~~~~~~i~~~~~~~~i~~  281 (390)
                      -.+++|...+|.++++||+.+.+|........+     .....+.+.+..+|....+..
T Consensus       149 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~  207 (218)
T cd03290         149 ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH  207 (218)
T ss_pred             HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh
Confidence            455677778899999999999999987765544     233345788888888755543

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.30  E-value=4.4e-06  Score=83.03  Aligned_cols=56  Identities=20%  Similarity=0.039  Sum_probs=43.9

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+++|....|.|+++||+.+.+|+.......+.+..    ...+.+.++|.+..+.. +++
T Consensus       174 ~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~Dr  234 (382)
T TIGR03415       174 GLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNR  234 (382)
T ss_pred             HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            556788889999999999999999988777665533    36788999999876533 443

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.29  E-value=4.9e-06  Score=78.92  Aligned_cols=53  Identities=15%  Similarity=0.043  Sum_probs=41.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+.+|...+|.++++||+.+.+|........+.+..    ...+.+..+|....+.
T Consensus       160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~  216 (268)
T PRK10419        160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVE  216 (268)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHH
Confidence            4666888889999999999999999877766555432    2578888999875554

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.29  E-value=4.4e-06  Score=81.64  Aligned_cols=57  Identities=14%  Similarity=0.058  Sum_probs=45.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|...+|.+|++||+.+.+|......+.+.+..    .+.+.+.++|.+..+.. +++
T Consensus       170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dr  231 (330)
T PRK09473        170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDK  231 (330)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCE
Confidence            4566788889999999999999999888777665533    36789999999887754 554

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.29  E-value=5.3e-06  Score=78.11  Aligned_cols=54  Identities=15%  Similarity=0.039  Sum_probs=42.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|....+..
T Consensus       161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~  217 (257)
T PRK10619        161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH  217 (257)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            3556788889999999999999999988777665433   36788889998765553

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.28  E-value=6.9e-07  Score=75.82  Aligned_cols=70  Identities=33%  Similarity=0.371  Sum_probs=42.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhcccccccc------CcchhhHH-HH-HHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY------SPYVGEAE-QN-VTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~------~~~~g~~~-~~-i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                      +|+|+||||||||+|++.+|...+.+++.+.++...      ..+.-... .. ....+..+.. .+.+++|||++..-
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~   78 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP   78 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG--
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC
Confidence            489999999999999999999999888766654422      22211000 00 0000001111 67999999999753

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PLN03130 ABC transporter C family member; Provisional

Probab=98.28  E-value=4.1e-06  Score=97.18  Aligned_cols=113  Identities=17%  Similarity=0.198  Sum_probs=81.0

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch---h-------cc-cccccc-------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV---L-------AA-SAAQLY-------------------------  215 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~---~-------~i-~~~~~~-------------------------  215 (390)
                      ++.+++|+.+.|+||+|||||||++++.++....-   +       ++ ..+.++                         
T Consensus       637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a  716 (1622)
T PLN03130        637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDV  716 (1622)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHH
Confidence            56788999999999999999999999997642100   0       00 000000                         


Q ss_pred             --------------Ccchhh------HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEe
Q psy11689        216 --------------SPYVGE------AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNG  272 (390)
Q Consensus       216 --------------~~~~g~------~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~  272 (390)
                                    ...+|+      +.|+.+-.+++|...+|.|+++||+.+.+|........+....   ...|.+.+
T Consensus       717 ~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlV  796 (1622)
T PLN03130        717 TALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLV  796 (1622)
T ss_pred             hCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEE
Confidence                          001121      3466777899999999999999999999999887766544322   46889999


Q ss_pred             ccCHHHHHhcCc
Q psy11689        273 GYREQTADTANK  284 (390)
Q Consensus       273 ~~~~~~i~~t~~  284 (390)
                      +|++..+..+++
T Consensus       797 TH~l~~l~~aD~  808 (1622)
T PLN03130        797 TNQLHFLSQVDR  808 (1622)
T ss_pred             ECCHhHHHhCCE
Confidence            999988777765

>PRK08116 hypothetical protein; Validated

Probab=98.28  E-value=2.1e-06  Score=81.44  Aligned_cols=71  Identities=21%  Similarity=0.364  Sum_probs=46.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhh----HHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGE----AEQNVTQLFHRARLAAPAILFIDEIERT  249 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~----~~~~i~~~f~~A~~~~p~il~lDEid~~  249 (390)
                      .+.+++|+|++|||||+|+.++|+++   +.+++.++.++++..+...    .......++..  ....++|+|||+...
T Consensus       113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~--l~~~dlLviDDlg~e  190 (268)
T PRK08116        113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRS--LVNADLLILDDLGAE  190 (268)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHH--hcCCCEEEEecccCC
Confidence            34679999999999999999999875   5667777766654432111    11111122222  235679999999653

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.28  E-value=3.6e-06  Score=83.45  Aligned_cols=185  Identities=14%  Similarity=0.118  Sum_probs=103.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc-----cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV-----YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~-----~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~  251 (390)
                      ....++||||+|+|||+|++|++++..     ..++++....++..++.....+-.+-|..-+  +-++++||+++.+.+
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g  189 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG  189 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence            356699999999999999999997764     2356666666665555554444445666666  668999999999998


Q ss_pred             hhhHHHHHH----HhhcCCCcEEEeccCH-HHHHhcCchhHHHhHH---HhhhhcCCchhHHHhhcccccccCCCCCCCC
Q psy11689        252 CEYREQTAD----NAKKPRIPRTNGGYRE-QTADTANKPRIQRTKR---EYREQTADTAHKTRISRTNRGYREKTADTAN  323 (390)
Q Consensus       252 ~r~~~~~~~----~~~~~~~~~i~~~~~~-~~i~~t~~~~~~r~~~---~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vd  323 (390)
                      +...+....    .+...+...+..+.+. ..+... .+++...+-   ..-...|+...+..|+......+....++--
T Consensus       190 k~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~-~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev  268 (408)
T COG0593         190 KERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL-EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEV  268 (408)
T ss_pred             ChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc-cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence            754433322    2233333444444332 222211 122321111   1111234455565554332333333333333


Q ss_pred             cchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhh
Q psy11689        324 KPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKP  368 (390)
Q Consensus       324 l~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~  368 (390)
                      ..-+|++-+   ....+|+.++++....|...++ .+|-+.+.+.
T Consensus       269 ~~~la~~~~---~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~  309 (408)
T COG0593         269 LEFLAKRLD---RNVRELEGALNRLDAFALFTKR-AITIDLVKEI  309 (408)
T ss_pred             HHHHHHHhh---ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHH
Confidence            344554432   2277888888887777766654 5565544443

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.27  E-value=5.4e-06  Score=79.11  Aligned_cols=53  Identities=15%  Similarity=0.022  Sum_probs=41.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+.
T Consensus       154 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~  209 (280)
T PRK13649        154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVA  209 (280)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHH
Confidence            4566788889999999999999999888776665533   3678888999876554

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.27  E-value=6.3e-06  Score=74.79  Aligned_cols=109  Identities=14%  Similarity=0.111  Sum_probs=64.0

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHH-----hhccchh----c----------cccccccCcch---hhHHHHHHHH
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAA-----HSVYRVL----A----------ASAAQLYSPYV---GEAEQNVTQL  229 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~-----~~~~~~~----~----------i~~~~~~~~~~---g~~~~~i~~~  229 (390)
                      ++.+.+++.++|+||+|+||||++++++.     ..|..+.    .          +...+......   ....+.+..+
T Consensus        23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i  102 (202)
T cd03243          23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEI  102 (202)
T ss_pred             eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHH
Confidence            34456678899999999999999999982     2231110    0          00111111111   1112233333


Q ss_pred             HHHHHhcCCeEEEEcCCCCCCChhhHHHHH----HHhhcCCCcEEEeccCHHHHHhc
Q psy11689        230 FHRARLAAPAILFIDEIERTYNCEYREQTA----DNAKKPRIPRTNGGYREQTADTA  282 (390)
Q Consensus       230 f~~A~~~~p~il~lDEid~~l~~r~~~~~~----~~~~~~~~~~i~~~~~~~~i~~t  282 (390)
                      .  +....|.++++||+.+.+++.......    ..+.....+.+..+|....+..+
T Consensus       103 ~--~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~  157 (202)
T cd03243         103 L--SLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLP  157 (202)
T ss_pred             H--HhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHh
Confidence            3  334689999999999999987654432    33333466778888875444433

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.27  E-value=3.4e-06  Score=96.98  Aligned_cols=62  Identities=19%  Similarity=0.110  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.|+++||+.+.+|..+...+.+.+...    +.+.+.++|++.++..+++
T Consensus       583 GQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~  648 (1466)
T PTZ00265        583 GQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANT  648 (1466)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCE
Confidence            3555668889999999999999999999999988887777543    5789999999988876665

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.27  E-value=4.4e-06  Score=85.19  Aligned_cols=61  Identities=15%  Similarity=0.057  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+.+.++|...+|.+|+.||++..+|.....++.+.+..    .+++.+.++|.+.+++. |++
T Consensus       159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDr  224 (539)
T COG1123         159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADR  224 (539)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCe
Confidence            44556888999999999999999999999998888776644    57899999999998876 454

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.26  E-value=5.1e-06  Score=86.43  Aligned_cols=57  Identities=14%  Similarity=0.109  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~  280 (390)
                      +..+..+++|....|.|+++||+.+.+|........+.+...+.+.+.++|....+.
T Consensus       160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~  216 (530)
T PRK15064        160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLN  216 (530)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            344557778888999999999999999999988887777666788899999876654

>PRK13409 putative ATPase RIL; Provisional

Probab=98.26  E-value=4.6e-06  Score=87.67  Aligned_cols=110  Identities=17%  Similarity=0.114  Sum_probs=73.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc---ch---hcc-------------cccccc-----------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY---RV---LAA-------------SAAQLY-----------------  215 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~---~~---~~i-------------~~~~~~-----------------  215 (390)
                      ++.+.++..+.|.||+|+|||||+++++.....   .+   +.+             +..+.+                 
T Consensus       359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L  438 (590)
T PRK13409        359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEII  438 (590)
T ss_pred             ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHH
Confidence            445678999999999999999999999954210   00   000             000000                 


Q ss_pred             ---------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        216 ---------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       216 ---------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                               ...+.  ++.+..+..+++|...+|.++++||+.+.+|........+.+..    .+.+.+.++|....+.
T Consensus       439 ~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~  518 (590)
T PRK13409        439 KPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID  518 (590)
T ss_pred             HHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence                     00000  12233445777888999999999999999999988877666644    3678899999876554


Q ss_pred             h
Q psy11689        281 T  281 (390)
Q Consensus       281 ~  281 (390)
                      .
T Consensus       519 ~  519 (590)
T PRK13409        519 Y  519 (590)
T ss_pred             H
Confidence            3

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.26  E-value=5.4e-06  Score=79.48  Aligned_cols=57  Identities=16%  Similarity=0.040  Sum_probs=43.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|..........+..   .+.+.+..+|.+..+.. |++
T Consensus       154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~  214 (287)
T PRK13641        154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADD  214 (287)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            4666788889999999999999999887766555433   36788899998776543 443

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.26  E-value=2.8e-06  Score=82.85  Aligned_cols=58  Identities=14%  Similarity=0.117  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT  281 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~  281 (390)
                      |..+-+.++|...+|.+|++||+.+.+|..-..++.+.+..    .+++.+.++|.+.++.+
T Consensus       431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrA  492 (534)
T COG4172         431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRA  492 (534)
T ss_pred             hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHH
Confidence            44556788999999999999999999998877777665543    37888999999877765

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=98.26  E-value=8e-06  Score=79.95  Aligned_cols=47  Identities=21%  Similarity=0.341  Sum_probs=39.0

Q ss_pred             CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      |.+|.|.++.|..|......|             ...++||.|++|||||+++++++..+
T Consensus        16 f~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l   62 (350)
T CHL00081         16 FTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLL   62 (350)
T ss_pred             HHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            339999999999988776553             34689999999999999999997554

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.25  E-value=5.6e-06  Score=85.53  Aligned_cols=55  Identities=7%  Similarity=-0.098  Sum_probs=42.9

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHh
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADT  281 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~  281 (390)
                      +..+++|....|.++++||+.+.+|........+.+.   ..+.+.+..+|.+..+..
T Consensus       149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~  206 (501)
T PRK10762        149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFE  206 (501)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3466788889999999999999999988877754443   346788899998876543

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.25  E-value=5.8e-06  Score=86.56  Aligned_cols=58  Identities=14%  Similarity=0.036  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHh
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADT  281 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~  281 (390)
                      +..+..+++|...+|.++++||+.+.+|........+.+.....+.+.++|....+..
T Consensus       168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~  225 (556)
T PRK11819        168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDN  225 (556)
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence            4445677888899999999999999999999888877776666688889998766543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.25  E-value=6e-06  Score=87.74  Aligned_cols=113  Identities=13%  Similarity=0.147  Sum_probs=76.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-------c----chhccccc---ccc---------Ccc-hh-------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-------Y----RVLAASAA---QLY---------SPY-VG-------  220 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-------~----~~~~i~~~---~~~---------~~~-~g-------  220 (390)
                      ++.+.++..+.|.||+|+|||||+++|+....       +    .+-++.-.   .+.         ..+ ..       
T Consensus       332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  411 (638)
T PRK10636        332 KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLR  411 (638)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHH
Confidence            45678899999999999999999999995421       0    00000000   000         000 00       


Q ss_pred             --------------------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689        221 --------------------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       221 --------------------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~  280 (390)
                                          .+.+..+..++++....|.++++||+++.+|..+.....+.+.....+.+.++|....+.
T Consensus       412 ~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~  491 (638)
T PRK10636        412 DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLR  491 (638)
T ss_pred             HHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence                                011223346677888899999999999999999988888877776668889999887665


Q ss_pred             h-cCc
Q psy11689        281 T-ANK  284 (390)
Q Consensus       281 ~-t~~  284 (390)
                      . |++
T Consensus       492 ~~~d~  496 (638)
T PRK10636        492 STTDD  496 (638)
T ss_pred             HhCCE
Confidence            4 443

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.25  E-value=5.2e-06  Score=85.54  Aligned_cols=53  Identities=21%  Similarity=0.169  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|....|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+.
T Consensus       144 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~  199 (490)
T PRK10938        144 TLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIP  199 (490)
T ss_pred             HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence            4666888889999999999999999988777665533   3578888999886654

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.25  E-value=8.2e-06  Score=75.88  Aligned_cols=60  Identities=13%  Similarity=0.129  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHHHHHh-cCc
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+.-++.+..+.|.|+|+||++--+|--....+.+.+    ...+.|.+..+|.+.-+.+ |++
T Consensus       162 RmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~r  226 (325)
T COG4586         162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDR  226 (325)
T ss_pred             HHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhh
Confidence            33445567889999999999999999876555554433    3346788888888766665 444

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.25  E-value=7.2e-06  Score=75.91  Aligned_cols=54  Identities=11%  Similarity=-0.024  Sum_probs=41.6

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~  281 (390)
                      ..+++|...+|.|+++||+.+.+|........+.+..    .+.+.+..+|++..+..
T Consensus       134 v~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~  191 (230)
T TIGR02770       134 VMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVAR  191 (230)
T ss_pred             HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            4666788889999999999999999887766655533    25678888998765543

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PHA02244 ATPase-like protein

Probab=98.24  E-value=2e-06  Score=84.03  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=47.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhccccc----cccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA----QLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~----~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                      .+..++|+||||||||+|++++|...+.+++.++..    .+.. +......-...-|-.|. ....+++|||++.+-
T Consensus       118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~  193 (383)
T PHA02244        118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASI  193 (383)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCC
Confidence            456799999999999999999999999998877632    1111 11111110111233333 456899999999865

>KOG0740|consensus

Probab=98.24  E-value=2.5e-07  Score=91.68  Aligned_cols=73  Identities=19%  Similarity=0.198  Sum_probs=58.9

Q ss_pred             eeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc-c----cCCcccchHHHHHHh
Q psy11689         11 TVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF-T----KLNEEVELSENVQRE   82 (390)
Q Consensus        11 ~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~-~----~~~~~v~l~~~la~~   82 (390)
                      +|||+|+|||+..+|+|++|                ||.   +|++|+ .++|..++.- +    ..-.+-++ +.||+.
T Consensus       290 rvlvigaTN~P~e~Dea~~R----------------rf~kr~yiplPd-~etr~~~~~~ll~~~~~~l~~~d~-~~l~~~  351 (428)
T KOG0740|consen  290 RVLVIGATNRPWELDEAARR----------------RFVKRLYIPLPD-YETRSLLWKQLLKEQPNGLSDLDI-SLLAKV  351 (428)
T ss_pred             eEEEEecCCCchHHHHHHHH----------------HhhceeeecCCC-HHHHHHHHHHHHHhCCCCccHHHH-HHHHHH
Confidence            89999999999999999998                677   455555 7778777754 1    12234566 779999


Q ss_pred             hcCCccccccccccccchh
Q psy11689         83 EEGIAGENLQRGGGEEGIE  101 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~  101 (390)
                      |+||+|.|+.++|.++++.
T Consensus       352 Tegysgsdi~~l~kea~~~  370 (428)
T KOG0740|consen  352 TEGYSGSDITALCKEAAMG  370 (428)
T ss_pred             hcCcccccHHHHHHHhhcC
Confidence            9999999999999999885

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.24  E-value=8e-06  Score=76.04  Aligned_cols=54  Identities=13%  Similarity=0.142  Sum_probs=42.0

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+..
T Consensus       153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~  209 (243)
T TIGR01978       153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNY  209 (243)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHh
Confidence            4666778888999999999999999888777665543   35778888898765543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.24  E-value=7.3e-06  Score=76.83  Aligned_cols=52  Identities=12%  Similarity=0.045  Sum_probs=38.5

Q ss_pred             HHHHHHhc-------CCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH
Q psy11689        229 LFHRARLA-------APAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~-------~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~  280 (390)
                      .+++|...       +|.++++||+.+.+|........+.+.   ....+.+..+|....+.
T Consensus       136 ~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~  197 (248)
T PRK03695        136 RLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTL  197 (248)
T ss_pred             HHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            55566665       679999999999999988776665553   23578888889875443

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.23  E-value=3.7e-06  Score=78.36  Aligned_cols=57  Identities=18%  Similarity=0.163  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTAD  280 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~  280 (390)
                      ++.+.+..+|...+|.++++||+-+.+|-....+.+..+.++    .+..+.++|.+.-++
T Consensus       133 EkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~  193 (352)
T COG4148         133 EKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL  193 (352)
T ss_pred             hhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHH
Confidence            445568889999999999999999999987777777766553    678888999875544

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.23  E-value=9.8e-06  Score=75.77  Aligned_cols=54  Identities=15%  Similarity=0.075  Sum_probs=41.6

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHH
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTAD  280 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~  280 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..  ...+.+..+|+...+.
T Consensus       150 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~  205 (246)
T PRK14269        150 RLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK  205 (246)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            34666788889999999999999999887776665543  3677888888876543

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.23  E-value=6.6e-06  Score=80.37  Aligned_cols=58  Identities=12%  Similarity=0.071  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHh-cCc
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +-.+++|...+|.|+++||+.+.+|........+.+..  ...+.+.++|++..+.. +++
T Consensus       233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Dr  293 (329)
T PRK14257        233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDE  293 (329)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            34677888889999999999999999887776555532  24788999999877665 554

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.23  E-value=4.9e-06  Score=70.82  Aligned_cols=53  Identities=23%  Similarity=0.267  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChh----hHHHHHHHhhcCCCcEEEeccCH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCE----YREQTADNAKKPRIPRTNGGYRE  276 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r----~~~~~~~~~~~~~~~~i~~~~~~  276 (390)
                      +.-+..+.++...+|..+++||+.+-+|..    +.+.+.......++..+.++|..
T Consensus       139 QrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~  195 (213)
T COG4136         139 QRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL  195 (213)
T ss_pred             hHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence            444557778899999999999999988864    34445556677788888888864

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.23  E-value=7.9e-06  Score=76.67  Aligned_cols=52  Identities=13%  Similarity=0.133  Sum_probs=40.5

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      .+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+.
T Consensus       156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~  211 (252)
T TIGR03005       156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAR  211 (252)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence            555778889999999999999999887776665532    2678888999875543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=3.5e-06  Score=89.26  Aligned_cols=104  Identities=22%  Similarity=0.282  Sum_probs=82.4

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLA  208 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~  208 (390)
                      ...+++.++|-++-...+.+++..             +...+-+|+|+||+|||+++..+|...          +..++.
T Consensus       165 r~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s  231 (786)
T COG0542         165 REGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS  231 (786)
T ss_pred             hcCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence            355666888888888777777754             345667899999999999999999553          234455


Q ss_pred             ccccccc--CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH
Q psy11689        209 ASAAQLY--SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR  255 (390)
Q Consensus       209 i~~~~~~--~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~  255 (390)
                      ++...+.  .+|-|+.|+.++.+........+.|+||||++.+.+....
T Consensus       232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~  280 (786)
T COG0542         232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGAT  280 (786)
T ss_pred             ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcc
Confidence            6665555  4578999999999999999999999999999999987653

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.22  E-value=3.6e-06  Score=72.39  Aligned_cols=73  Identities=21%  Similarity=0.295  Sum_probs=47.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhc---cchhccccccccC----------------------cch--hhHHHHHHHHHHHH
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYS----------------------PYV--GEAEQNVTQLFHRA  233 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~----------------------~~~--g~~~~~i~~~f~~A  233 (390)
                      ++|+||||+|||+++..++....   .+++.++......                      .+.  ..........+..+
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR   81 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence            68999999999999999987652   3444333321111                      000  11112223456677


Q ss_pred             HhcCCeEEEEcCCCCCCChh
Q psy11689        234 RLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       234 ~~~~p~il~lDEid~~l~~r  253 (390)
                      ....|.++++||+..+++..
T Consensus        82 ~~~~~~~lviDe~~~~~~~~  101 (165)
T cd01120          82 ERGGDDLIILDELTRLVRAL  101 (165)
T ss_pred             hCCCCEEEEEEcHHHHHHHH
Confidence            78899999999999877543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PLN03073 ABC transporter F family; Provisional

Probab=98.22  E-value=7.3e-06  Score=87.91  Aligned_cols=110  Identities=16%  Similarity=0.175  Sum_probs=74.8

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----cc--------hh--------ccccccc------c---------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----YR--------VL--------AASAAQL------Y---------  215 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~~--------~~--------~i~~~~~------~---------  215 (390)
                      ++.+.++..+.|.||+|+|||||+++++....     +.        ++        .+.....      .         
T Consensus       529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~  608 (718)
T PLN03073        529 NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR  608 (718)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHH
Confidence            56678899999999999999999999995421     00        00        0000000      0         


Q ss_pred             -------------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689        216 -------------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       216 -------------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~  280 (390)
                                   .....  .+.+..+..+++|....|.++++||+.+.+|........+.+.....+.+.++|....+.
T Consensus       609 ~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~  688 (718)
T PLN03073        609 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLIS  688 (718)
T ss_pred             HHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence                         00000  123444567888999999999999999999999888777776654457888999875554


Q ss_pred             h
Q psy11689        281 T  281 (390)
Q Consensus       281 ~  281 (390)
                      .
T Consensus       689 ~  689 (718)
T PLN03073        689 G  689 (718)
T ss_pred             H
Confidence            3

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.22  E-value=1.3e-05  Score=72.47  Aligned_cols=46  Identities=15%  Similarity=0.073  Sum_probs=34.5

Q ss_pred             cCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHh
Q psy11689        236 AAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADT  281 (390)
Q Consensus       236 ~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~  281 (390)
                      ..|.++++||+++.++........+.+...  ..+.+.++|++..+..
T Consensus       134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~  181 (197)
T cd03278         134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEA  181 (197)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhh
Confidence            456899999999999998887776655432  4677888888755443

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.22  E-value=1.7e-06  Score=94.27  Aligned_cols=109  Identities=19%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccC-----
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYS-----  216 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~-----  216 (390)
                      .|.|.+...+.+.+.+......   +.. .-+|-..+||+||||+|||.+|+++|..+.   ..++.++++++..     
T Consensus       567 ~v~GQ~~Av~~v~~~i~~~~~g---l~~-~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~  642 (852)
T TIGR03345       567 RVIGQDHALEAIAERIRTARAG---LED-PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS  642 (852)
T ss_pred             eEcChHHHHHHHHHHHHHHhcC---CCC-CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence            4566666666666666432110   000 012223589999999999999999998872   3455666554321     


Q ss_pred             -------cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH
Q psy11689        217 -------PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTAD  260 (390)
Q Consensus       217 -------~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~  260 (390)
                             +|+|..+..  .+....+..+.+||+|||++.. ++...+...+
T Consensus       643 ~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka-~~~v~~~Llq  690 (852)
T TIGR03345       643 RLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKA-HPDVLELFYQ  690 (852)
T ss_pred             cccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhc-CHHHHHHHHH
Confidence                   233332211  1233445577899999999964 3333333333

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.22  E-value=1.2e-06  Score=84.49  Aligned_cols=72  Identities=19%  Similarity=0.286  Sum_probs=48.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHH-HHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAE-QNVTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~-~~i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                      .+.+++|+||+|+|||+|+.|+|+++   |.++..+..++++........ ......+..  ....++|+|||+..--
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~--l~~~dlLiIDDiG~e~  230 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA--VKEAPVLMLDDIGAEQ  230 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH--hcCCCEEEEecCCCcc
Confidence            56799999999999999999999886   556666666655433221110 112223333  3567899999998653

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.21  E-value=1e-05  Score=74.47  Aligned_cols=52  Identities=15%  Similarity=0.111  Sum_probs=40.7

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      .+.+|...+|.++++||+.+.+|........+.+..   .+.+.+..+|....+.
T Consensus       159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~  213 (224)
T TIGR02324       159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRE  213 (224)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            455677788999999999999999888777665533   3678888999876554

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.21  E-value=5.7e-06  Score=75.09  Aligned_cols=93  Identities=13%  Similarity=0.192  Sum_probs=62.5

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----cchhcccc--------------------ccccCc---------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----YRVLAASA--------------------AQLYSP---------  217 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~~~~~i~~--------------------~~~~~~---------  217 (390)
                      ++.+.++..+.|.||+|+|||||++.++....     ---+.++.                    ..++..         
T Consensus        27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~  106 (202)
T cd03233          27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDF  106 (202)
T ss_pred             EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhh
Confidence            45678999999999999999999999996532     00000000                    000000         


Q ss_pred             --------chh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        218 --------YVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       218 --------~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                              +..  ...+..+..+++|...+|.++++||+.+.+|........+.+..
T Consensus       107 ~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~  163 (202)
T cd03233         107 ALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT  163 (202)
T ss_pred             hhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence                    000  11233445788899999999999999999999888777665543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.21  E-value=1e-06  Score=82.90  Aligned_cols=75  Identities=25%  Similarity=0.371  Sum_probs=49.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHH-HHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQ-NVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~-~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      .+.+++|+||||+|||+|+.|+++++   |..+..+..++++...-..-.. ....-+.+ .....++|||||+...-..
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~-~l~~~dlLIiDDlG~~~~~  182 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLR-ELKKVDLLIIDDIGYEPFS  182 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHH-HhhcCCEEEEecccCccCC
Confidence            78899999999999999999999775   4666777777766443221110 00001111 1355689999999876443

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.21  E-value=7.3e-06  Score=71.72  Aligned_cols=102  Identities=12%  Similarity=0.093  Sum_probs=60.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccch------------hcccccc----cc-CcchhhHHHHHHHHHHHHHh----
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRV------------LAASAAQ----LY-SPYVGEAEQNVTQLFHRARL----  235 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~------------~~i~~~~----~~-~~~~g~~~~~i~~~f~~A~~----  235 (390)
                      .+...+++||+|+|||+++++++-..+...            ..+...+    .. ....+.  +..+..+.++..    
T Consensus        20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G--~~~~~~la~~L~~~~~   97 (162)
T cd03227          20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGG--EKELSALALILALASL   97 (162)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeecccc--HHHHHHHHHHHHhcCC
Confidence            456899999999999999999873322111            0000000    00 111112  222223334333    


Q ss_pred             cCCeEEEEcCCCCCCChhhHHHHHHHhhcC---CCcEEEeccCHHHHH
Q psy11689        236 AAPAILFIDEIERTYNCEYREQTADNAKKP---RIPRTNGGYREQTAD  280 (390)
Q Consensus       236 ~~p~il~lDEid~~l~~r~~~~~~~~~~~~---~~~~i~~~~~~~~i~  280 (390)
                      ..|+++++||+.+-++..........+...   ..+.+..+|......
T Consensus        98 ~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~  145 (162)
T cd03227          98 KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE  145 (162)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence            378999999999999998776665544322   456677788765443

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.21  E-value=6e-06  Score=78.67  Aligned_cols=57  Identities=16%  Similarity=0.079  Sum_probs=46.0

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+++.|....|.+|+-||+++.+|.....++.+.+..    .+.+.+.++|.+.+++. +++
T Consensus       162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDr  223 (316)
T COG0444         162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADR  223 (316)
T ss_pred             HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcce
Confidence            3556788889999999999999999888877665533    57888999999988775 554

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.20  E-value=1e-05  Score=75.65  Aligned_cols=53  Identities=15%  Similarity=0.085  Sum_probs=40.9

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+...  ..+.+..+|++..+.
T Consensus       153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~  207 (247)
T TIGR00972       153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAA  207 (247)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHH
Confidence            45667788889999999999999998887776655432  367888889876543

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.20  E-value=1.3e-07  Score=78.74  Aligned_cols=98  Identities=21%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhccccc-cccC-cchhh-----HHHH----HHHHHHHHHhcCCeEEEEcCCCC
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA-QLYS-PYVGE-----AEQN----VTQLFHRARLAAPAILFIDEIER  248 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~-~~~~-~~~g~-----~~~~----i~~~f~~A~~~~p~il~lDEid~  248 (390)
                      +|||.|+||+|||++++++|+..+..|..+.+. ++.. ...|.     ....    -.-+|       ..|+++||+-+
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr   73 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR   73 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence            589999999999999999999999888777653 3221 11110     0000    01122       24999999988


Q ss_pred             CCChhhHHHHHHHhhcCCCc----EEEeccCHHHHHhcCch
Q psy11689        249 TYNCEYREQTADNAKKPRIP----RTNGGYREQTADTANKP  285 (390)
Q Consensus       249 ~l~~r~~~~~~~~~~~~~~~----~i~~~~~~~~i~~t~~~  285 (390)
                      . .++......+.+....++    .....+...+++|-|..
T Consensus        74 a-ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~  113 (131)
T PF07726_consen   74 A-PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPV  113 (131)
T ss_dssp             S--HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT
T ss_pred             C-CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCcc
Confidence            5 455555555665554444    22222334445555543

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=1.1e-05  Score=75.45  Aligned_cols=53  Identities=17%  Similarity=0.045  Sum_probs=40.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..  ...+.+..+|++..+.
T Consensus       155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~  209 (250)
T PRK14247        155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAA  209 (250)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            3556777888999999999999999988777665543  2467788888876543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.20  E-value=1e-05  Score=83.56  Aligned_cols=57  Identities=11%  Similarity=-0.066  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHh
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADT  281 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~  281 (390)
                      ..+..+++|...+|.|+++||+.+.+|........+.+.   ..+.+.+.++|.+..+..
T Consensus       146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~  205 (501)
T PRK11288        146 RQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA  205 (501)
T ss_pred             HHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            334577788899999999999999999998877765554   346788999999876543

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.20  E-value=2.3e-07  Score=94.91  Aligned_cols=82  Identities=16%  Similarity=0.085  Sum_probs=61.9

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCccccccccCCcccchHHHHHH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPFTKLNEEVELSENVQR   81 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~~~~~~~v~l~~~la~   81 (390)
                      |.+.-+++|++||+||+++.+|+||+|              ||||+ .|++|. +.++|++|+.. .+..++.+ ..-+.
T Consensus       326 Dgl~~~~~ViVI~ATN~~d~LDpALlR--------------pGRfD~~I~~~~Pd~e~r~~Il~~-~l~~~l~l-~~~l~  389 (512)
T TIGR03689       326 DGVESLDNVIVIGASNREDMIDPAILR--------------PGRLDVKIRIERPDAEAAADIFSK-YLTDSLPL-DADLA  389 (512)
T ss_pred             cccccCCceEEEeccCChhhCCHhhcC--------------ccccceEEEeCCCCHHHHHHHHHH-HhhccCCc-hHHHH
Confidence            555556899999999999999999999              99999 677777 46788888875 12223333 22345


Q ss_pred             hhcCCccccccccccccchh
Q psy11689         82 EEEGIAGENLQRGGGEEGIE  101 (390)
Q Consensus        82 ~t~G~~g~~l~~~~~ea~~~  101 (390)
                      .+.|++++++.+++.++.-.
T Consensus       390 ~~~g~~~a~~~al~~~av~~  409 (512)
T TIGR03689       390 EFDGDREATAAALIQRAVDH  409 (512)
T ss_pred             HhcCCCHHHHHHHHHHHHHH
Confidence            57999999999998876543

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.20  E-value=4.9e-06  Score=69.47  Aligned_cols=74  Identities=22%  Similarity=0.388  Sum_probs=43.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh--------ccchhccccccccCc--c------------hh-hHHH-HHHHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS--------VYRVLAASAAQLYSP--Y------------VG-EAEQ-NVTQLFHR  232 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~--------~~~~~~i~~~~~~~~--~------------~g-~~~~-~i~~~f~~  232 (390)
                      ..+.++++||||+|||++++.++...        ..+++.+.++.....  +            .. .... ....+.+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~   82 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA   82 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence            45679999999999999999999876        455555555433310  0            01 1222 23333333


Q ss_pred             HHhcCCeEEEEcCCCCCC
Q psy11689        233 ARLAAPAILFIDEIERTY  250 (390)
Q Consensus       233 A~~~~p~il~lDEid~~l  250 (390)
                      .......+|+|||++.+.
T Consensus        83 l~~~~~~~lviDe~~~l~  100 (131)
T PF13401_consen   83 LDRRRVVLLVIDEADHLF  100 (131)
T ss_dssp             HHHCTEEEEEEETTHHHH
T ss_pred             HHhcCCeEEEEeChHhcC
Confidence            444444599999999953

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.19  E-value=1.1e-05  Score=75.75  Aligned_cols=54  Identities=9%  Similarity=-0.004  Sum_probs=41.6

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|++..+.
T Consensus       148 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~  205 (254)
T PRK10418        148 RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVA  205 (254)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence            34667888889999999999999999887766555533    2578888899876553

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.19  E-value=9.1e-06  Score=71.22  Aligned_cols=55  Identities=13%  Similarity=0.064  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHH---HHhhcCCCcEEEeccCHH
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTA---DNAKKPRIPRTNGGYREQ  277 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~---~~~~~~~~~~i~~~~~~~  277 (390)
                      .+..+..+++|...+|.++++||+++.+|+.--.+..   +.+...+.|.+..+|.+.
T Consensus       156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~  213 (256)
T COG4598         156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG  213 (256)
T ss_pred             hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence            3556678899999999999999999999998766554   444556888899998753

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.19  E-value=9.2e-06  Score=73.17  Aligned_cols=50  Identities=16%  Similarity=0.153  Sum_probs=40.7

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHH----HhhcCCCcEEEeccCHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTAD----NAKKPRIPRTNGGYREQT  278 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~----~~~~~~~~~i~~~~~~~~  278 (390)
                      .+..|..++|.|+++||=.+.+|++.+..+++    .+....++.+.++|.+..
T Consensus       158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~  211 (263)
T COG1101         158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED  211 (263)
T ss_pred             HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH
Confidence            44467788999999999999999998876654    446678999999998643

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=98.18  E-value=2.9e-06  Score=82.35  Aligned_cols=80  Identities=30%  Similarity=0.395  Sum_probs=54.8

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc--cchhccccccccCcchhhH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV--YRVLAASAAQLYSPYVGEA  222 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~--~~~~~i~~~~~~~~~~g~~  222 (390)
                      .+.|...+.+..--++.+-        +-+--.++++||.||||||||+||-++|.++|  .||..++++++++.-...+
T Consensus        25 GlVGQ~~AReAagiiv~mI--------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKT   96 (398)
T PF06068_consen   25 GLVGQEKAREAAGIIVDMI--------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKT   96 (398)
T ss_dssp             TEES-HHHHHHHHHHHHHH--------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HH
T ss_pred             cccChHHHHHHHHHHHHHH--------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCch
Confidence            6788888877766655541        11224689999999999999999999999998  8999999999987665554


Q ss_pred             HHHHHHHHHHH
Q psy11689        223 EQNVTQLFHRA  233 (390)
Q Consensus       223 ~~~i~~~f~~A  233 (390)
                      | .+.+.|.+|
T Consensus        97 E-~L~qa~Rra  106 (398)
T PF06068_consen   97 E-ALTQAFRRA  106 (398)
T ss_dssp             H-HHHHHHHCS
T ss_pred             H-HHHHHHHHh
Confidence            4 345566643

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.18  E-value=1.1e-05  Score=83.21  Aligned_cols=54  Identities=7%  Similarity=-0.100  Sum_probs=43.1

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD  280 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~  280 (390)
                      +..+++|....|.++++||+.+.+|........+.+.   ..+.+.+..+|+...+.
T Consensus       142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~  198 (491)
T PRK10982        142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIF  198 (491)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            3467788888999999999999999988877755553   34678889999987654

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.18  E-value=9.6e-07  Score=78.62  Aligned_cols=73  Identities=27%  Similarity=0.487  Sum_probs=45.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhH-HHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEA-EQNVTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~-~~~i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                      ..+.+++|+||||+|||+||.+++.++   |.++.+++.++++....... .......+..  ...+++|+|||+...-
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~--l~~~dlLilDDlG~~~  121 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR--LKRVDLLILDDLGYEP  121 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH--HHTSSCEEEETCTSS-
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc--cccccEecccccceee
Confidence            357899999999999999999998654   56666677666654322110 0111223333  3356899999997643

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.18  E-value=1e-05  Score=85.77  Aligned_cols=57  Identities=14%  Similarity=0.082  Sum_probs=45.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|....|.+|++||+.+.+|........+.+..    .+.+.+.++|.+..+.. +++
T Consensus       472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dr  533 (623)
T PRK10261        472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHR  533 (623)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            4666788889999999999999999988877766632    36889999999876654 443

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.18  E-value=1.1e-05  Score=84.28  Aligned_cols=109  Identities=13%  Similarity=0.119  Sum_probs=73.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c-c--------chhcc---------cccc----------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V-Y--------RVLAA---------SAAQ----------------  213 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~-~--------~~~~i---------~~~~----------------  213 (390)
                      ++.+.++..+.|.||+|+|||||+++++...    | +        .++.-         +..+                
T Consensus       342 sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~  421 (552)
T TIGR03719       342 SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREV  421 (552)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchH
Confidence            5567889999999999999999999998432    1 0        00000         0000                


Q ss_pred             ----ccCc----------chh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHH
Q psy11689        214 ----LYSP----------YVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQ  277 (390)
Q Consensus       214 ----~~~~----------~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~  277 (390)
                          ++..          .++  +..+..+..+++|....|.++++||+.+.+|........+.+.....+.+.++|...
T Consensus       422 ~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~  501 (552)
T TIGR03719       422 PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRW  501 (552)
T ss_pred             HHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence                0000          000  012334457778889999999999999999999998888877776557788888765


Q ss_pred             HHH
Q psy11689        278 TAD  280 (390)
Q Consensus       278 ~i~  280 (390)
                      .+.
T Consensus       502 ~~~  504 (552)
T TIGR03719       502 FLD  504 (552)
T ss_pred             HHH
Confidence            443

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.17  E-value=3.2e-06  Score=92.24  Aligned_cols=111  Identities=20%  Similarity=0.229  Sum_probs=65.6

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCc----
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSP----  217 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~----  217 (390)
                      .|.|.+.+.+.+...+......   +.. .-+|...+||+||+|+|||+||+++|..+.   .+++.++.+++...    
T Consensus       510 ~v~GQ~~ai~~l~~~i~~~~~g---l~~-~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~  585 (821)
T CHL00095        510 RIIGQDEAVVAVSKAIRRARVG---LKN-PNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS  585 (821)
T ss_pred             cCcChHHHHHHHHHHHHHHhhc---ccC-CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence            4667777777776666432110   000 112234589999999999999999998762   45666666554321    


Q ss_pred             --------chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        218 --------YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       218 --------~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                              |+|..+  ...+....+..+.+||+|||+|.+ .+...+...+.+
T Consensus       586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-~~~v~~~Llq~l  635 (821)
T CHL00095        586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-HPDIFNLLLQIL  635 (821)
T ss_pred             HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC-CHHHHHHHHHHh
Confidence                    222211  123444455566689999999975 444444444433

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.17  E-value=1.1e-05  Score=83.54  Aligned_cols=54  Identities=11%  Similarity=0.006  Sum_probs=42.7

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      ..+++|....|.++++||+.+.+|........+.+..   .+.+.+.++|.+..+..
T Consensus       152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~  208 (506)
T PRK13549        152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKA  208 (506)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence            4666888889999999999999999888777655533   36788899999876543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.16  E-value=1.3e-05  Score=75.35  Aligned_cols=52  Identities=12%  Similarity=0.025  Sum_probs=39.8

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~  280 (390)
                      .+.+|...+|.++++||+.+.+|........+.+...  ..+.+..+|....+.
T Consensus       160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~  213 (254)
T PRK14273        160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAG  213 (254)
T ss_pred             HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            5557777889999999999999998887776655432  467788888876543

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.16  E-value=1.3e-05  Score=83.91  Aligned_cols=109  Identities=12%  Similarity=0.106  Sum_probs=73.1

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c---c------chhc-----c----cccccc--------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V---Y------RVLA-----A----SAAQLY--------------  215 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~---~------~~~~-----i----~~~~~~--------------  215 (390)
                      ++.+.++..+.|.||+|+|||||+++++...    |   +      .++.     +    +..+.+              
T Consensus       344 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~  423 (556)
T PRK11819        344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREI  423 (556)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHH
Confidence            4567889999999999999999999999432    1   0      0000     0    000000              


Q ss_pred             ----------------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHH
Q psy11689        216 ----------------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQ  277 (390)
Q Consensus       216 ----------------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~  277 (390)
                                      ....+  .+.+..+..+++|....|.++++||+.+.+|........+.+.....+.+.++|...
T Consensus       424 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~  503 (556)
T PRK11819        424 PSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRW  503 (556)
T ss_pred             HHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH
Confidence                            00000  012334457778888999999999999999999988888877666557788888764


Q ss_pred             HHH
Q psy11689        278 TAD  280 (390)
Q Consensus       278 ~i~  280 (390)
                      .+.
T Consensus       504 ~~~  506 (556)
T PRK11819        504 FLD  506 (556)
T ss_pred             HHH
Confidence            433

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.16  E-value=8.7e-06  Score=79.45  Aligned_cols=58  Identities=22%  Similarity=0.193  Sum_probs=44.6

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|....+.. +++
T Consensus       108 RvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~  170 (325)
T TIGR01187       108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDR  170 (325)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            34666888889999999999999999888777665533    36788999999866543 443

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.15  E-value=1.2e-05  Score=85.54  Aligned_cols=57  Identities=16%  Similarity=0.028  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHh
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADT  281 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~  281 (390)
                      ..+..+++|....|.|+++||+.+.+|........+.+.....+.+.++|....+..
T Consensus       162 kqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~  218 (635)
T PRK11147        162 LRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRN  218 (635)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            344577788889999999999999999999888888777766788889998765543

>PLN03073 ABC transporter F family; Provisional

Probab=98.15  E-value=8.5e-06  Score=87.42  Aligned_cols=56  Identities=14%  Similarity=0.017  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHh
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADT  281 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~  281 (390)
                      .+..+++|....|.++++||+...+|..........+.....+.+.++|....+..
T Consensus       351 ~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~  406 (718)
T PLN03073        351 MRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNT  406 (718)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            34467788888999999999999999999988888887777888999998776654

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.15  E-value=1.3e-05  Score=75.43  Aligned_cols=53  Identities=13%  Similarity=0.106  Sum_probs=41.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.|+++||+.+.+|........+.+..    .+.+.+..+|+...+.
T Consensus       160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~  216 (258)
T PRK11701        160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR  216 (258)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence            3666788889999999999999999888777665532    2678888999876554

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.15  E-value=1.4e-05  Score=77.85  Aligned_cols=57  Identities=11%  Similarity=-0.055  Sum_probs=44.6

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH-hcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD-TANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~-~t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+.++|++..+. .+++
T Consensus       185 vaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adr  245 (320)
T PRK13631        185 VAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADE  245 (320)
T ss_pred             HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence            4666888889999999999999999988877665532   3678899999987554 3554

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.15  E-value=1.5e-05  Score=77.99  Aligned_cols=57  Identities=16%  Similarity=0.033  Sum_probs=45.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|...+|.+|++||+.+.+|......+.+.+..    .+.+.+.++|.+..+.. +++
T Consensus       167 v~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dr  228 (330)
T PRK15093        167 VMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADK  228 (330)
T ss_pred             HHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence            3566788888999999999999999888777665543    36889999999887754 554

>PF13173 AAA_14: AAA domain

Probab=98.15  E-value=3.1e-06  Score=71.01  Aligned_cols=72  Identities=25%  Similarity=0.347  Sum_probs=46.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhc--cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSV--YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~--~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~  251 (390)
                      .+.++|+||.|+||||+++.++....  -.+++++..+......... + +.+.+.......+.+|||||+..+-+
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~~~   75 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYLPD   75 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhhcc
Confidence            45689999999999999999998865  5566666544322111100 0 22333333223678999999998754

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=2.1e-05  Score=71.55  Aligned_cols=44  Identities=9%  Similarity=0.018  Sum_probs=32.5

Q ss_pred             HHhcCCeEEEEcCCCCCCChhhHHHH---HHHhhcCCCcEEEeccCH
Q psy11689        233 ARLAAPAILFIDEIERTYNCEYREQT---ADNAKKPRIPRTNGGYRE  276 (390)
Q Consensus       233 A~~~~p~il~lDEid~~l~~r~~~~~---~~~~~~~~~~~i~~~~~~  276 (390)
                      +....|.+.+|||+|+-+|-..-..+   ...+.......+.++|..
T Consensus       158 ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~  204 (251)
T COG0396         158 LLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ  204 (251)
T ss_pred             HHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence            34578999999999999997654433   345566677788888853

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.15  E-value=1.3e-05  Score=85.18  Aligned_cols=110  Identities=19%  Similarity=0.217  Sum_probs=75.3

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c---------cchhcccccccc------------------C----
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V---------YRVLAASAAQLY------------------S----  216 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~---------~~~~~i~~~~~~------------------~----  216 (390)
                      ++.+.++..+.|.||+|+|||||+++++...    |         +.++.-....+.                  .    
T Consensus       339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~  418 (635)
T PRK11147        339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPR  418 (635)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHH
Confidence            5567889999999999999999999999542    1         000000000000                  0    


Q ss_pred             -------c--chh----------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHH
Q psy11689        217 -------P--YVG----------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQ  277 (390)
Q Consensus       217 -------~--~~g----------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~  277 (390)
                             .  +.+          .+.+..+..+++|...+|.++++||+.+.+|..+.....+.+.....+.+.++|...
T Consensus       419 ~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~  498 (635)
T PRK11147        419 HVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQ  498 (635)
T ss_pred             HHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH
Confidence                   0  000          012333456778888899999999999999999988887777766668899999876


Q ss_pred             HHHh
Q psy11689        278 TADT  281 (390)
Q Consensus       278 ~i~~  281 (390)
                      .+..
T Consensus       499 ~~~~  502 (635)
T PRK11147        499 FVDN  502 (635)
T ss_pred             HHHH
Confidence            6543

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=98.14  E-value=1.6e-06  Score=84.77  Aligned_cols=84  Identities=29%  Similarity=0.370  Sum_probs=55.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc--hhhHHHHH----H--------HHHHHHHhcCCeEE
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY--VGEAEQNV----T--------QLFHRARLAAPAIL  241 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~--~g~~~~~i----~--------~~f~~A~~~~p~il  241 (390)
                      ..++++||.||||||||+|++.+|...+.+++.+.+...+...  .|...-..    .        -+|....    .|+
T Consensus        41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~il  116 (329)
T COG0714          41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VIL  116 (329)
T ss_pred             HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEE
Confidence            3678899999999999999999999999999988876443221  11111000    0        0111111    499


Q ss_pred             EEcCCCCCCChhhHHHHHHHhhc
Q psy11689        242 FIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       242 ~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                      ++|||.+.- +...+.....+..
T Consensus       117 l~DEInra~-p~~q~aLl~~l~e  138 (329)
T COG0714         117 LLDEINRAP-PEVQNALLEALEE  138 (329)
T ss_pred             EEeccccCC-HHHHHHHHHHHhC
Confidence            999999865 5555555555544

>KOG0064|consensus

Probab=98.14  E-value=3.6e-06  Score=84.40  Aligned_cols=53  Identities=15%  Similarity=0.080  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHH
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQT  278 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~  278 (390)
                      .+-.+++...++|...++||.++.....-+..+.+.....+++.+.++||+..
T Consensus       619 QR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpsl  671 (728)
T KOG0064|consen  619 QRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSL  671 (728)
T ss_pred             HHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccH
Confidence            34567788899999999999999999999999999999999999999998643

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.14  E-value=1.3e-05  Score=83.10  Aligned_cols=55  Identities=4%  Similarity=-0.072  Sum_probs=43.4

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      +..+++|....|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+..
T Consensus       153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~  210 (510)
T PRK09700        153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRR  210 (510)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence            34667888899999999999999999988777655433   36788899999876543

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.14  E-value=1.6e-05  Score=74.34  Aligned_cols=56  Identities=11%  Similarity=0.080  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT  281 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~  281 (390)
                      .+..+++|....|.++++||+.+.+|........+.+   .....+.+..+|....+..
T Consensus       152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~  210 (248)
T PRK09580        152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDY  210 (248)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence            3456778888899999999999999998887776543   3335778888888655443

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.13  E-value=1.3e-05  Score=83.83  Aligned_cols=58  Identities=14%  Similarity=0.076  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHh
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADT  281 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~  281 (390)
                      +..+..+++|....|.++++||+.+.+|........+.+.....+.+.++|....+..
T Consensus       166 qkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~  223 (552)
T TIGR03719       166 ERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDN  223 (552)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence            3445577788889999999999999999999888877776666688889998766554

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=98.13  E-value=1.4e-05  Score=78.01  Aligned_cols=48  Identities=27%  Similarity=0.333  Sum_probs=38.9

Q ss_pred             CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .|..|.|.+.+|..+.-.+..|             ...+++|.|+||+|||||+++++...
T Consensus         2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~   49 (337)
T TIGR02030         2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALL   49 (337)
T ss_pred             CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence            3558999999998876655432             35789999999999999999999665

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.13  E-value=1.8e-05  Score=74.63  Aligned_cols=51  Identities=16%  Similarity=0.110  Sum_probs=39.0

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTA  279 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i  279 (390)
                      .+.+|...+|.++++||+.+.+|........+.+..  ...+.+..+|+...+
T Consensus       163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~  215 (257)
T PRK14246        163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQV  215 (257)
T ss_pred             HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHH
Confidence            444667778999999999999999887776665533  247888888887655

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.13  E-value=1.7e-05  Score=74.92  Aligned_cols=51  Identities=16%  Similarity=0.093  Sum_probs=40.4

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTA  279 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i  279 (390)
                      .+.+|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+
T Consensus       162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~  216 (262)
T PRK09984        162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYA  216 (262)
T ss_pred             HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            555788889999999999999999988777666543    257888888987544

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.12  E-value=1e-05  Score=78.18  Aligned_cols=57  Identities=9%  Similarity=-0.077  Sum_probs=43.6

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHH-hcCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTAD-TANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~-~t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|........+.+.   ..+.+.+.++|.+..+. .+++
T Consensus       174 valA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr  234 (305)
T PRK13651        174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR  234 (305)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence            466678888999999999999999988777665553   34688899999976554 3443

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.12  E-value=1.3e-05  Score=92.97  Aligned_cols=113  Identities=17%  Similarity=0.175  Sum_probs=80.2

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chh---------------cc-------------ccc
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVL---------------AA-------------SAA  212 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~---------------~i-------------~~~  212 (390)
                      ++.+++|+.+.+.||+|+|||||+++++++...           .++               ..             ...
T Consensus       658 sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~  737 (1522)
T TIGR00957       658 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEAC  737 (1522)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHh
Confidence            566789999999999999999999999954210           000               00             000


Q ss_pred             cc---cC-------cchh------hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc-----CCCcEEE
Q psy11689        213 QL---YS-------PYVG------EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK-----PRIPRTN  271 (390)
Q Consensus       213 ~~---~~-------~~~g------~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~-----~~~~~i~  271 (390)
                      .+   +.       ...|      .+.|+.+-.+++|...+|.|+++||+.+.+|........+.+..     ...+.+.
T Consensus       738 ~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIl  817 (1522)
T TIGR00957       738 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRIL  817 (1522)
T ss_pred             CCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEE
Confidence            00   00       0011      13456677889999999999999999999999998888777642     3578899


Q ss_pred             eccCHHHHHhcCc
Q psy11689        272 GGYREQTADTANK  284 (390)
Q Consensus       272 ~~~~~~~i~~t~~  284 (390)
                      ++|++..+..+++
T Consensus       818 vTH~~~~l~~~D~  830 (1522)
T TIGR00957       818 VTHGISYLPQVDV  830 (1522)
T ss_pred             EeCChhhhhhCCE
Confidence            9999887766654

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.12  E-value=1.9e-05  Score=74.04  Aligned_cols=54  Identities=11%  Similarity=0.060  Sum_probs=41.4

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      +..+++|....|.|+++||+.+.+|..+.....+.+..   .+.+.+..+|....+.
T Consensus       159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~  215 (252)
T CHL00131        159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLD  215 (252)
T ss_pred             HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            34566778888999999999999999988777665532   3577888888865544

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.11  E-value=1.8e-05  Score=72.96  Aligned_cols=52  Identities=15%  Similarity=0.081  Sum_probs=39.0

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~  280 (390)
                      .+++|...+|.++++||+.+.+|........+.+...  ..+.+..+|....+.
T Consensus       151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~  204 (227)
T cd03260         151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAA  204 (227)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHH
Confidence            4456777789999999999999998887776655432  267788888865443

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.11  E-value=1.7e-05  Score=81.82  Aligned_cols=109  Identities=18%  Similarity=0.167  Sum_probs=77.4

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-------------chhcccccccc---------Ccch----------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-------------RVLAASAAQLY---------SPYV----------  219 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-------------~~~~i~~~~~~---------~~~~----------  219 (390)
                      ++.+.++..|.|.||+|+|||||++.++...+.             -++.-...++.         ..+.          
T Consensus       342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~  421 (530)
T COG0488         342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRA  421 (530)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHH
Confidence            567789999999999999999999999644320             00100000000         0000          


Q ss_pred             ------------------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689        220 ------------------GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       220 ------------------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~  280 (390)
                                        =++.++.+..|+.....+|.+++|||++.-+|-.+.......+..-.-+.+.++|....+.
T Consensus       422 ~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~  500 (530)
T COG0488         422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLD  500 (530)
T ss_pred             HHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence                              0123444567888888999999999999999999999888888888889999999754443

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.11  E-value=2e-05  Score=73.95  Aligned_cols=53  Identities=13%  Similarity=0.098  Sum_probs=41.6

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..    ...+.+..+|....+.
T Consensus       157 v~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~  213 (253)
T TIGR02323       157 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVAR  213 (253)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            4666788889999999999999999888777665532    3678888999876554

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.11  E-value=2e-05  Score=73.82  Aligned_cols=53  Identities=13%  Similarity=0.070  Sum_probs=40.5

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHh
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADT  281 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~  281 (390)
                      .+.+|...+|.++++||+.+.+|........+.+...  ..+.+..+|.+..+..
T Consensus       157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~  211 (251)
T PRK14251        157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR  211 (251)
T ss_pred             HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHh
Confidence            5557777889999999999999998887766655432  4677888898765443

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.11  E-value=1.9e-05  Score=74.04  Aligned_cols=53  Identities=17%  Similarity=0.119  Sum_probs=40.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..  ...+.+..+|++..+.
T Consensus       158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~  212 (253)
T PRK14242        158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAA  212 (253)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHH
Confidence            3556777888999999999999999888777665543  2467788888875553

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.11  E-value=2.3e-05  Score=80.88  Aligned_cols=58  Identities=21%  Similarity=0.091  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~  280 (390)
                      .++.+..+++|...+|++++|||++..+|-..-......+....-+.+.++|.-..+.
T Consensus       157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd  214 (530)
T COG0488         157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLD  214 (530)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHH
Confidence            3566778899999999999999999999999988888888666558899999754443

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.10  E-value=2e-05  Score=83.77  Aligned_cols=56  Identities=11%  Similarity=-0.023  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~  280 (390)
                      ..+..+++|....|.|++|||+.+.+|........+.+.....+.+.++|....+.
T Consensus       155 rqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~  210 (638)
T PRK10636        155 RMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLD  210 (638)
T ss_pred             HHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            34456778888899999999999999999888887777776778889999876654

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.10  E-value=2.4e-05  Score=71.21  Aligned_cols=49  Identities=16%  Similarity=0.144  Sum_probs=37.1

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYRE  276 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~  276 (390)
                      .++.+|...+|.+++|||+..-+.+.--.++.+.+..    ..++.+.+..+.
T Consensus       145 LAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~  197 (237)
T COG0410         145 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA  197 (237)
T ss_pred             HHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH
Confidence            4677899999999999999999998877776665533    245666666554

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.10  E-value=2.3e-05  Score=70.11  Aligned_cols=97  Identities=11%  Similarity=0.070  Sum_probs=55.6

Q ss_pred             EEEEcCCCChHHHHHHHHH-----Hhhccch---------h-----ccccccccCcchhhHHHHHHHHHHHHHh--cCCe
Q psy11689        181 ILLYGPPGCAKTSLVRTLA-----AHSVYRV---------L-----AASAAQLYSPYVGEAEQNVTQLFHRARL--AAPA  239 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia-----~~~~~~~---------~-----~i~~~~~~~~~~g~~~~~i~~~f~~A~~--~~p~  239 (390)
                      ++|+||+|+|||++++.++     .+.|.++         +     .+...+......+.-...+++ +..+..  ..|+
T Consensus         2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~-l~~~l~~~~~~~   80 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKE-TANILKNATENS   80 (185)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHH-HHHHHHhCCCCe
Confidence            6899999999999999998     2333211         1     011111111111111112222 233333  4899


Q ss_pred             EEEEcCCCCCCChhhHHHHH----HHhhc-CCCcEEEeccCHHH
Q psy11689        240 ILFIDEIERTYNCEYREQTA----DNAKK-PRIPRTNGGYREQT  278 (390)
Q Consensus       240 il~lDEid~~l~~r~~~~~~----~~~~~-~~~~~i~~~~~~~~  278 (390)
                      ++++||+.+.+++.......    ..+.. ...+.+..+|....
T Consensus        81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l  124 (185)
T smart00534       81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL  124 (185)
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH
Confidence            99999999999987554432    33333 35677788887643

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.08  E-value=1.8e-05  Score=84.35  Aligned_cols=56  Identities=14%  Similarity=0.078  Sum_probs=43.7

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHhcCc
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+++|...+|.++++||+..-+|..........+..   ...+.+..+|....+..+++
T Consensus       154 ~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~  212 (648)
T PRK10535        154 SIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAER  212 (648)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCE
Confidence            555778889999999999999999988777665533   36788899998877655543

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.08  E-value=2.6e-05  Score=73.07  Aligned_cols=54  Identities=17%  Similarity=0.068  Sum_probs=40.8

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~  281 (390)
                      ..+++|...+|.++++||+.+.+|........+.+...  ..+.+..+|+...+..
T Consensus       157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~  212 (252)
T PRK14272        157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAAR  212 (252)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence            35557777889999999999999998887766655432  4777888898765553

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.08  E-value=2.7e-05  Score=73.06  Aligned_cols=52  Identities=12%  Similarity=0.056  Sum_probs=39.1

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~  280 (390)
                      .+++|....|.++++||+.+.+|........+.+...  ..+.+..+|++..+.
T Consensus       158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~  211 (252)
T PRK14256        158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAA  211 (252)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHH
Confidence            4556777789999999999999998877766554322  467788888875543

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.08  E-value=2.6e-05  Score=74.14  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=39.9

Q ss_pred             HHHHHHh---------cCCeEEEEcCCCCCCChhhHHHHHHHhhc---C-CCcEEEeccCHHHHH
Q psy11689        229 LFHRARL---------AAPAILFIDEIERTYNCEYREQTADNAKK---P-RIPRTNGGYREQTAD  280 (390)
Q Consensus       229 ~f~~A~~---------~~p~il~lDEid~~l~~r~~~~~~~~~~~---~-~~~~i~~~~~~~~i~  280 (390)
                      .+.+|..         .+|.++++||+.+.+|........+.+..   . +.+.+.++|+...+.
T Consensus       155 ~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~  219 (272)
T PRK13547        155 QFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA  219 (272)
T ss_pred             HHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence            5556776         48999999999999999988777665533   2 577888999876554

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.08  E-value=1.5e-05  Score=75.69  Aligned_cols=52  Identities=19%  Similarity=0.077  Sum_probs=39.6

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHH
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQ  277 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~  277 (390)
                      .+.-+++|....|.|+++||+.+.+|+--..+.++.+    .+...|.+.++|.+.
T Consensus       171 QRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd  226 (386)
T COG4175         171 QRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD  226 (386)
T ss_pred             HHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence            3456778999999999999999999986555544444    445788888988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	390
4b4t_J	405	Near-Atomic Resolution Structural Model Of The Yeas		4e-19
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		6e-18
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		6e-18
3cf0_A	301	Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH		9e-18
2x8a_A	274	Human Nuclear Valosin Containing Protein Like (Nvl)		3e-16
3h4m_A	285	Aaa Atpase Domain Of The Proteasome- Activating Nuc		3e-16
3d8b_A	357	Crystal Structure Of Human Fidgetin-Like Protein 1		4e-16
4b4t_K	428	Near-Atomic Resolution Structural Model Of The Yeas		4e-16
4b4t_M	434	Near-Atomic Resolution Structural Model Of The Yeas		2e-15
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		2e-14
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		2e-14
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		2e-14
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		2e-14
1e32_A	458	Structure Of The N-Terminal Domain And The D1 Aaa D		3e-14
2rko_A	331	Crystal Structure Of The Vps4p-Dimer Length = 331		3e-14
2qp9_X	355	Crystal Structure Of S.Cerevisiae Vps4 Length = 355		4e-14
3eih_A	340	Crystal Structure Of S.Cerevisiae Vps4 In The Prese		6e-14
3eie_A	322	Crystal Structure Of S.Cerevisiae Vps4 In The So4-B		9e-14
4b4t_I	437	Near-Atomic Resolution Structural Model Of The Yeas		9e-14
4b4t_H	467	Near-Atomic Resolution Structural Model Of The Yeas		2e-13
3vfd_A	389	Human Spastin Aaa Domain Length = 389		2e-13
2zam_A	444	Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt		3e-12
1xwi_A	322	Crystal Structure Of Vps4b Length = 322		4e-12
3b9p_A	297	Spastin Length = 297		1e-11
1lv7_A	257	Crystal Structure Of The Aaa Domain Of Ftsh Length		4e-11
2ce7_A	476	Edta Treated Length = 476		4e-11
1iy2_A	278	Crystal Structure Of The Ftsh Atpase Domain From Th		1e-10
1ixz_A	254	Crystal Structure Of The Ftsh Atpase Domain From Th		1e-10
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		2e-10
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		2e-10
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		2e-10
2r62_A	268	Crystal Structure Of Helicobacter Pylori Atp Depend		4e-10
2qz4_A	262	Human Paraplegin, Aaa Domain In Complex With Adp Le		2e-09
1um8_A	376	Crystal Structure Of Helicobacter Pylori Clpx Lengt		4e-04

>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 64/102 (62%)
Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
           +GGL      +++ +E P K+   FE L I +PKG++LYGPPG  KT L R +A H+  +
Sbjct: 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209
Query: 206 VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
            +  S A+L   Y+GE  + V +LF  AR  AP+I+F+DEI+
Sbjct: 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 65/103 (63%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+ V+  +++ V++P ++  +F +  +   KG+L YGPPGC KT L + +A     
Sbjct: 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             ++    +L + + GE+E NV ++F +AR AAP +LF DE++
Sbjct: 538 NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 65/103 (63%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+ V+  +++ V++P ++  +F +  +   KG+L YGPPGC KT L + +A     
Sbjct: 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             ++    +L + + GE+E NV ++F +AR AAP +LF DE++
Sbjct: 538 NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580

>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 65/103 (63%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+ V+  +++ V++P ++  +F +  +   KG+L YGPPGC KT L + +A     
Sbjct: 16  DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 75
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             ++    +L + + GE+E NV ++F +AR AAP +LF DE++
Sbjct: 76  NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 118

>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 62/103 (60%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++G L+ +R  +   +  P +   +F+ L +  P G+LL GPPGC KT L + +A  S  
Sbjct: 11  DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL 70
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             ++    +L + YVGE+E+ V Q+F RA+ +AP ++F DE++
Sbjct: 71  NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVD 113

>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+     + + VE P K+   FE++ I  PKGILLYGPPG  KT L + +A  +  
Sbjct: 18  DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             +    ++L   ++GE    V  +F  A+  AP+I+FIDEI+
Sbjct: 78  TFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEID 120

>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++ G++  +A +++ V WP      F  L  P PKGILL+GPPG  KT + + +A+ S  
Sbjct: 85  DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGKTLIGKCIASQSGA 143
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
              + SA+ L S +VGE E+ V  LF  AR   PA++FIDEI+   +   +    ++   
Sbjct: 144 TFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS---QRGDGEHESS 200
Query: 265 PRIPRTNGGYREQTADTANKPRIQRTKREYREQTADTAHKTRISR 309
            RI +T    +   A T+++ RI       R Q  D A + R+ +
Sbjct: 201 RRI-KTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVK 244

>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 68/123 (55%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL   +  + + VE P   A  +E++ I  P+G+LLYGPPG  KT LV+ +A  +  
Sbjct: 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA 232
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
             +  + ++    Y+GE  + V  +F  AR  AP+I+FIDE++      +  QT  + + 
Sbjct: 233 AFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREV 292
Query: 265 PRI 267
            RI
Sbjct: 293 QRI 295

>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 145 ELGGL-KGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV 203
           ++GGL K +  L+E  V  P K A +F+ + I  PKG L+YGPPG  KT L R  AA + 
Sbjct: 182 DVGGLDKQIEELVEAIV-LPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN 240
Query: 204 YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
              L  +A QL   Y+GE  + V   F  A+  AP I+FIDE++
Sbjct: 241 ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELD 284

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 146 LGGL-KGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           +GGL + +R L E  +E P K    F+R+ I  PKG+LLYGPPG  KT L + +AA    
Sbjct: 183 IGGLTEQIRELRE-VIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTA 259
             + + A+ +   Y+GE+ + + ++F  A+   P I+F+DE++      + E T+
Sbjct: 242 NFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GG +   A +++ VE P ++   F+ + +  P+GILLYGPPG  KT + R +A  +  
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
                +  ++ S   GE+E N+ + F  A   APAI+FIDE++
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GG +   A +++ VE P ++   F+ + +  P+GILLYGPPG  KT + R +A  +  
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
                +  ++ S   GE+E N+ + F  A   APAI+FIDE++
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GG +   A +++ VE P ++   F+ + +  P+GILLYGPPG  KT + R +A  +  
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
                +  ++ S   GE+E N+ + F  A   APAI+FIDE++
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307

>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 60/103 (58%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GG +   A +++ VE P ++   F+ + +  P+GILLYGPPG  KT + R +A  +  
Sbjct: 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
                +  ++ S   GE+E N+ + F  A   APAI+FIDE++
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307

>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++ GL+G +  +++ V  P K+   F+    P   GILLYGPPG  K+ L + +A  +  
Sbjct: 28  DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT-SGILLYGPPGTGKSYLAKAVATEANS 86
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
              + S++ L S ++GE+E+ V QLF  AR   P+I+FIDE++
Sbjct: 87  TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVD 129

>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++ GL+G +  +++ V  P K+   F+    P   GILLYGPPG  K+ L + +A  +  
Sbjct: 52  DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT-SGILLYGPPGTGKSYLAKAVATEANS 110
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
              + S++ L S ++GE+E+ V QLF  AR   P+I+FID+++
Sbjct: 111 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 153

>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++ GL+G +  +++ V  P K+   F+    P   GILLYGPPG  K+ L + +A  +  
Sbjct: 37  DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT-SGILLYGPPGTGKSYLAKAVATEANS 95
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
              + S++ L S ++GE+E+ V QLF  AR   P+I+FID+++
Sbjct: 96  TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 138

>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++ GL+G +  +++ V  P K+   F+    P   GILLYGPPG  K+ L + +A  +  
Sbjct: 19  DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPT-SGILLYGPPGTGKSYLAKAVATEANS 77
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
              + S++ L S ++GE+E+ V QLF  AR   P+I+FID+++
Sbjct: 78  TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD 120

>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 27/206 (13%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+     ++++VE P  +   +E + I  PKG++LYG PG  KT L + +A  +  
Sbjct: 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 242
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
             L    ++L   Y+G+  +   Q+F  A   AP+I+FIDEI             D    
Sbjct: 243 TFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEI-------------DAIGT 289
Query: 265 PRIPRTNGGYREQTADTANKPRIQRTKREYREQTADTAHKTRISRTNRGYREKTADTANK 324
            R    +GG RE          IQRT  E   Q      +  +       + +T D    
Sbjct: 290 KRYDSNSGGERE----------IQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD---- 335
Query: 325 PRIPRTNRGYREYSAQNANTANKPRI 350
           P + R  R  R+   +N + + K +I
Sbjct: 336 PALIRPGRIDRKILFENPDLSTKKKI 361

>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 52/103 (50%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GG K     + + VE P      F  L I  PKGILLYGPPG  KT   R +A  +  
Sbjct: 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA 269
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             +    ++L   YVGE  + V +LF  AR     I+F DEI+
Sbjct: 270 TFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEID 312

>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++ G    +  +++ V  P      F  L  P  +G+LL+GPPG  KT L + +AA S  
Sbjct: 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPA-RGLLLFGPPGNGKTMLAKAVAAESNA 174
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK 264
                SAA L S YVGE E+ V  LF  AR   P+I+FID+++    CE RE   D +++
Sbjct: 175 TFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLL-CERREGEHDASRR 233

>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++ GL+G +  +++ V  P K+   F     P  +GILL+GPPG  K+ L + +A  +  
Sbjct: 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGKSYLAKAVATEANN 193
Query: 205 R-VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
               + S++ L S ++GE+E+ V  LF  AR   P+I+FIDEI+
Sbjct: 194 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEID 237

>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV- 203
           ++ GL+G +  +++ V  P K+   F     P  +GILL+GPPG  K+ L + +A  +  
Sbjct: 13  DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGKSYLAKAVATEANN 71
Query: 204 YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK 263
               + S++ L S ++GE+E+ V  LF  AR   P+I+FIDEI+    C  R +    A 
Sbjct: 72  STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL--CGSRSENESEAA 129
Query: 264 K 264
           +
Sbjct: 130 R 130

>pdb|3B9P|A Chain A, Spastin Length = 297

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 43/69 (62%)
Query: 179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAP 238
           KG+LL+GPPG  KT L R +A       L  SAA L S YVG+ E+ V  LF  AR   P
Sbjct: 55  KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQP 114
Query: 239 AILFIDEIE 247
           +I+FIDE++
Sbjct: 115 SIIFIDEVD 123

>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 165 KYARE---FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE 221
           +Y RE   F++L    PKG+L+ GPPG  KT L + +A  +       S +     +VG 
Sbjct: 29  EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV 88
Query: 222 AEQNVTQLFHRARLAAPAILFIDEIE 247
               V  +F +A+ AAP I+FIDEI+
Sbjct: 89  GASRVRDMFEQAKKAAPCIIFIDEID 114

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GG +     +++ VE+  K   +F R+    PKGILL GPPG  KT L R +A  +  
Sbjct: 17  DVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV 75
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
                S +     +VG     V  LF +A+  AP I+FIDEI+
Sbjct: 76  PFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEID 118

>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 160 VEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV 219
           VE+  K    F  +    PKG+LL GPPG  KT L R +A  +    + AS +     +V
Sbjct: 56  VEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114
Query: 220 GEAEQNVTQLFHRARLAAPAILFIDEIE 247
           G     V  LF  A+  AP I+FIDEI+
Sbjct: 115 GVGAARVRDLFETAKRHAPCIVFIDEID 142

>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 159 TVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY 218
            VE+  K    F  +    PKG+LL GPPG  KT L R +A  +    + AS +     +
Sbjct: 31  IVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89
Query: 219 VGEAEQNVTQLFHRARLAAPAILFIDEIE 247
           VG     V  LF  A+  AP I+FIDEI+
Sbjct: 90  VGVGAARVRDLFETAKRHAPCIVFIDEID 118

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 41/78 (52%)
Query: 170 FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL 229
           F  +    PKG+LL GPPG  KT L R +A  +    + AS +     +VG     V  L
Sbjct: 65  FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 124
Query: 230 FHRARLAAPAILFIDEIE 247
           F  A+  AP I+FIDEI+
Sbjct: 125 FETAKRHAPCIVFIDEID 142

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 41/78 (52%)
Query: 170 FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL 229
           F  +    PKG+LL GPPG  KT L R +A  +    + AS +     +VG     V  L
Sbjct: 56  FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 115
Query: 230 FHRARLAAPAILFIDEIE 247
           F  A+  AP I+FIDEI+
Sbjct: 116 FETAKRHAPCIVFIDEID 133

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GG +     +++ VE+  K   +F R+    PKGILL GPPG   T L R +A  +  
Sbjct: 17  DVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANV 75
Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
                S +     +VG     V  LF +A+  AP I+FIDEI+
Sbjct: 76  PFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEID 118

>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 42/84 (50%)
Query: 164 FKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAE 223
            KY   +  L    PKG+LL GPPG  KT L + +A  +     +   +     +VG   
Sbjct: 30  LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGA 89
Query: 224 QNVTQLFHRARLAAPAILFIDEIE 247
             V  LF  A+  AP+I+FIDEI+
Sbjct: 90  SRVRDLFETAKKQAPSIIFIDEID 113

>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 41/78 (52%)
Query: 170 FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQL 229
           F +L    PKG LL GPPGC KT L + +A  +    LA + A+      G     V  L
Sbjct: 31  FLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSL 90
Query: 230 FHRARLAAPAILFIDEIE 247
           F  AR  AP I++IDEI+
Sbjct: 91  FKEARARAPCIVYIDEID 108

>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx Length = 376

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY-SPYVGEAEQNV-TQLFHRARL--- 235
           ILL GP G  KT + +TLA H    +  + A  L  + YVGE  +N+ T+L   +     
Sbjct: 75  ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 236 -AAPAILFIDEIERT 249
            A   I+FIDEI++ 
Sbjct: 135 KAQKGIVFIDEIDKI 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	390
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	6e-35
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	3e-27
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	4e-33
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	7e-33
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	4e-27
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	1e-25
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	7e-25
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	7e-25
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	2e-24
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	3e-24
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	5e-24
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	4e-23
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	2e-22
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	1e-20
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	1e-17
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	6e-11
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	1e-10
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	2e-10
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	3e-10
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	5e-10
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	3e-07
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	3e-07
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	6e-07
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	2e-06
3pvs_A	447	Replication-associated recombination protein A; ma	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	1e-04
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	1e-04
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	1e-04
2qgz_A	308	Helicase loader, putative primosome component; str	2e-04

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score =  124 bits (313), Expect = 4e-33
 Identities = 36/100 (36%), Positives = 59/100 (59%)

Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
           G L+ +R  +   +  P +   +F+ L +  P G+LL GPPGC KT L + +A  S    
Sbjct: 13  GALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNF 72

Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
           ++    +L + YVGE+E+ V Q+F RA+ +AP ++F DE+
Sbjct: 73  ISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEV 112

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score =  123 bits (312), Expect = 7e-33
 Identities = 36/100 (36%), Positives = 62/100 (62%)

Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
           GGL+ V+  +++ V++P ++  +F +  +   KG+L YGPPGC KT L + +A       
Sbjct: 18  GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 77

Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
           ++    +L + + GE+E NV ++F +AR AAP +LF DE+
Sbjct: 78  ISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDEL 117

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score =  111 bits (279), Expect = 4e-27
 Identities = 36/102 (35%), Positives = 59/102 (57%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GG +   A +++ VE P ++   F+ + +  P+GILLYGPPG  KT + R +A  +  
Sbjct: 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
                +  ++ S   GE+E N+ + F  A   APAI+FIDE+
Sbjct: 265 FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score =  104 bits (261), Expect = 1e-25
 Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
            G    +  +++ V  P      F  L  P  KG+LL+GPPG  KT L R +A       
Sbjct: 24  AGQDVAKQALQEMVILPSVRPELFTGLRAP-AKGLLLFGPPGNGKTLLARAVATECSATF 82

Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
           L  SAA L S YVG+ E+ V  LF  AR   P+I+FIDE+
Sbjct: 83  LNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score =  102 bits (256), Expect = 7e-25
 Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 1/100 (1%)

Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
            GL+G +  +++ V  P K+   F+    P   GILLYGPPG  K+ L + +A  +    
Sbjct: 21  AGLEGAKEALKEAVILPVKFPHLFKGNRKP-TSGILLYGPPGTGKSYLAKAVATEANSTF 79

Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
            + S++ L S ++GE+E+ V QLF  AR   P+I+FID++
Sbjct: 80  FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 119

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score =  101 bits (254), Expect = 7e-25
 Identities = 39/102 (38%), Positives = 59/102 (57%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+     + + VE P K+   FE++ I  PKGILLYGPPG  KT L + +A  +  
Sbjct: 18  DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
             +    ++L   ++GE    V  +F  A+  AP+I+FIDEI
Sbjct: 78  TFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEI 119

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score =  102 bits (255), Expect = 2e-24
 Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 1/101 (0%)

Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
            G++  +A +++ V WP      F  L  P PKGILL+GPPG  KT + + +A+ S    
Sbjct: 87  AGVEFAKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGKTLIGKCIASQSGATF 145

Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
            + SA+ L S +VGE E+ V  LF  AR   PA++FIDEI+
Sbjct: 146 FSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEID 186

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score =  100 bits (252), Expect = 3e-24
 Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 2/101 (1%)

Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
            GL+G +  +++ V  P K+   F     P  +GILL+GPPG  K+ L + +A  +    
Sbjct: 15  AGLEGAKEALKEAVILPIKFPHLFTGKRTP-WRGILLFGPPGTGKSYLAKAVATEANNST 73

Query: 207 -LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
             + S++ L S ++GE+E+ V  LF  AR   P+I+FIDEI
Sbjct: 74  FFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEI 114

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score =  101 bits (253), Expect = 5e-24
 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 1/101 (0%)

Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
            G    +  +++ V  P      F  L  P  +G+LL+GPPG  KT L + +AA S    
Sbjct: 118 AGQDLAKQALQEIVILPSLRPELFTGLRAP-ARGLLLFGPPGNGKTMLAKAVAAESNATF 176

Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
              SAA L S YVGE E+ V  LF  AR   P+I+FID+++
Sbjct: 177 FNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVD 217

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score = 99.3 bits (247), Expect = 4e-23
 Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 2/102 (1%)

Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
           + GL+G +  +++ V  P K+   F     P  +GILL+GPPG  K+ L + +A  +   
Sbjct: 136 VAGLEGAKEALKEAVILPIKFPHLFTGKRTP-WRGILLFGPPGTGKSYLAKAVATEANNS 194

Query: 206 V-LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
              + S++ L S ++GE+E+ V  LF  AR   P+I+FIDEI
Sbjct: 195 TFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEI 236

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score = 96.4 bits (240), Expect = 2e-22
 Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 1/100 (1%)

Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
            GL+G +  +++ V  P K+   F+    P   GILLYGPPG  K+ L + +A  +    
Sbjct: 54  AGLEGAKEALKEAVILPVKFPHLFKGNRKP-TSGILLYGPPGTGKSYLAKAVATEANSTF 112

Query: 207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
            + S++ L S ++GE+E+ V QLF  AR   P+I+FID++
Sbjct: 113 FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 152

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score = 89.9 bits (223), Expect = 1e-20
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
           L G     A M+K V    K     +   I  P  + ++G  G  K+     +       
Sbjct: 6   LDGFYIAPAFMDKLVVHITKNF--LKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGIN 63

Query: 206 VLAASAAQLYSPYVGEAEQNVTQLFHRA----RLAAPAILFIDEI 246
            +  SA +L S   GE  + + Q +  A    R      LFI+++
Sbjct: 64  PIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDL 108

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 6/111 (5%)

Query: 147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV 206
                    +    E   +  +  +R        +LL GPP   KT+L   +A  S +  
Sbjct: 36  IKWGDPVTRVLDDGELLVQQTKNSDRT---PLVSVLLEGPPHSGKTALAAKIAEESNFPF 92

Query: 207 LAASAAQLYSPYVGEAE-QNVTQLFHRARLAAPAILFIDEIERTYNCEYRE 256
           +   +      +   A+ Q + ++F  A  +  + + +D+IER    +Y  
Sbjct: 93  IKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL--LDYVP 141

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 29/83 (34%), Positives = 44/83 (53%)

Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
           +    F++L    PKG+L+ GPPG  KT L + +A  +       S +     +VG    
Sbjct: 32  REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGAS 91

Query: 225 NVTQLFHRARLAAPAILFIDEIE 247
            V  +F +A+ AAP I+FIDEI+
Sbjct: 92  RVRDMFEQAKKAAPCIIFIDEID 114

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 32/83 (38%), Positives = 42/83 (50%)

Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
           K    F  +    PKG+LL GPPG  KT L R +A  +    + AS +     +VG    
Sbjct: 36  KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 95

Query: 225 NVTQLFHRARLAAPAILFIDEIE 247
            V  LF  A+  AP I+FIDEI+
Sbjct: 96  RVRDLFETAKRHAPCIVFIDEID 118

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 32/83 (38%), Positives = 42/83 (50%)

Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
           K    F  +    PKG+LL GPPG  KT L R +A  +    + AS +     +VG    
Sbjct: 60  KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 119

Query: 225 NVTQLFHRARLAAPAILFIDEIE 247
            V  LF  A+  AP I+FIDEI+
Sbjct: 120 RVRDLFETAKRHAPCIVFIDEID 142

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 33/82 (40%), Positives = 41/82 (50%)

Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
           K    F +L    PKG LL GPPGC KT L + +A  +    LA + A+      G    
Sbjct: 26  KSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAA 85

Query: 225 NVTQLFHRARLAAPAILFIDEI 246
            V  LF  AR  AP I++IDEI
Sbjct: 86  RVRSLFKEARARAPCIVYIDEI 107

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 30/82 (36%), Positives = 41/82 (50%)

Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
           KY   +  L    PKG+LL GPPG  KT L + +A  +     +   +     +VG    
Sbjct: 31  KYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGAS 90

Query: 225 NVTQLFHRARLAAPAILFIDEI 246
            V  LF  A+  AP+I+FIDEI
Sbjct: 91  RVRDLFETAKKQAPSIIFIDEI 112

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 22/152 (14%)

Query: 129 EERRDWEGEEEGAFVPE--------LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKG 180
               D   E EG+   E        L GLK V+  + +T        R  ++L +     
Sbjct: 8   PTSIDLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAAL-LLVERARQKLGLAHETP 66

Query: 181 ---ILLYGPPGCAKTSLVRTLAAH-------SVYRVLAASAAQLYSPYVGEAEQNVTQLF 230
              +   G PG  KT++   +A             +++ +   L   Y+G       ++ 
Sbjct: 67  TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVL 126

Query: 231 HRARLAAPAILFIDEIERTYNCEYREQTADNA 262
            RA      +LFIDE    Y  +        A
Sbjct: 127 KRAM---GGVLFIDEAYYLYRPDNERDYGQEA 155

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 32/82 (39%), Positives = 41/82 (50%)

Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
           K    F  +    PKG+LL GPPG  KT L R +A  +    + AS +     +VG    
Sbjct: 51  KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 110

Query: 225 NVTQLFHRARLAAPAILFIDEI 246
            V  LF  A+  AP I+FIDEI
Sbjct: 111 RVRDLFETAKRHAPCIVFIDEI 132

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 33/82 (40%), Positives = 42/82 (51%)

Query: 165 KYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ 224
           K   +F R+    PKGILL GPPG  KT L R +A  +       S +     +VG    
Sbjct: 36  KDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAA 95

Query: 225 NVTQLFHRARLAAPAILFIDEI 246
            V  LF +A+  AP I+FIDEI
Sbjct: 96  RVRDLFAQAKAHAPCIVFIDEI 117

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 19/190 (10%)

Query: 178 PKGILLYGPPGCAKTSLVRTLAAH--SVYRVLAASAAQLYSPYVGEAEQNVTQLFHRA-- 233
            + +LL GPPG  KT+L   +A    S         +++YS  + + E  + + F RA  
Sbjct: 63  GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAIG 121

Query: 234 -RLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKR 292
            R+     ++  E+                 +   P    G          K      + 
Sbjct: 122 LRIKETKEVYEGEVTEL-----------TPCETENPMGGYGKTISHVIIGLKTAKGTKQL 170

Query: 293 EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQR 352
           +      ++  K R+   +  Y E    +    R  R +    E+  +       P+   
Sbjct: 171 KLDPSIFESLQKERVEAGDVIYIEAN--SGAVKRQGRCDTYATEFDLEAEEYVPLPKGDV 228

Query: 353 TKREYREQTA 362
            K++   Q  
Sbjct: 229 HKKKEIIQDV 238

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI 240
           ++L+GPPG  KT+L   +A ++   V   SA    +  V E  + + +           I
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAV---TSGVKEIREAIERARQNRNAGRRTI 109

Query: 241 LFIDEIER 248
           LF+DE+ R
Sbjct: 110 LFVDEVHR 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 34/248 (13%), Positives = 80/248 (32%), Gaps = 42/248 (16%)

Query: 30  HVRSSLSHYRPSCLKAGGLGVIDLPTAPQGRETELPFTKLNEEVELSENVQREEEG---I 86
             +  LS +  + +        D+   P+        +K  EE++     +    G   +
Sbjct: 17  QYKDILSVFEDAFVD--NFDCKDVQDMPKS-----ILSK--EEIDHIIMSKDAVSGTLRL 67

Query: 87  AGENLQRGGGEEGIE--LREGGQRNGGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVP 144
               L +   EE ++  + E  + N       L   +      + E+R         ++ 
Sbjct: 68  FWTLLSKQ--EEMVQKFVEEVLRINYK----FLMSPI------KTEQRQPSMMTR-MYIE 114

Query: 145 ELGGLKGVRALMEK-TVEWPFKYAREFERLAIPKP-KGILLYGPPGCAKTSLV-RTLAAH 201
           +   L     +  K  V     Y +  + L   +P K +L+ G  G  KT +      ++
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 202 SV-----YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE 256
            V     +++   +     SP      + + +L ++         +    + + N + R 
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSP--ETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRI 227

Query: 257 QTADNAKK 264
            +     +
Sbjct: 228 HSIQAELR 235

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 6/88 (6%)

Query: 164 FKYAREF-ERLAIPKPKGILLYGPPGCAKT----SLVRTLAAHSVYRVLAASAAQLYSPY 218
               R F       + KG+   G PG  KT    + ++ +      R        L    
Sbjct: 23  LLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF-R 81

Query: 219 VGEAEQNVTQLFHRARLAAPAILFIDEI 246
           +               +    +L +D++
Sbjct: 82  LKHLMDEGKDTKFLKTVLNSPVLVLDDL 109

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Length = 377

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 117 LNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIP 176
           L  R   + +  +      G  +      + G+  +  L+ K     + + +      IP
Sbjct: 111 LTNRFNDLLDRMDIMFGSTGSADIEEW--MAGVAWLHCLLPKMDSVVYDFLKCMVY-NIP 167

Query: 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207
           K +  L  GP    KT+L   L      + L
Sbjct: 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKAL 198

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 152 VRALMEKTVEWPFKYAREFERLAI---PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL 207
           V  L      W       F+          +  +LYGPPG  KT+    +A    Y +L
Sbjct: 48  VMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 164 FKYAREF-ERLAIPKPKGILLYGPPGCAKT----SLVRTLAAHSVYRVLAASAAQLYSPY 218
           F    +F E+    + KG+ LYG  G  K+    ++   L+                   
Sbjct: 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI-D 195

Query: 219 VGEAEQNVTQLFHRARLAAPAILFIDEI 246
           V  A  N +       +    +L +D+I
Sbjct: 196 VKNAISNGSVKEEIDAVKNVPVLILDDI 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	390
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	100.0
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	100.0
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	100.0
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	100.0
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	100.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	100.0
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	100.0
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.97
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.96
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.95
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.94
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.94
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.94
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.93
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.93
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.92
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.92
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.91
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.91
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.91
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.91
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.9
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.9
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.89
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.89
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.88
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.87
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.81
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.72
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.64
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.56
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.48
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.46
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.42
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.39
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.36
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.34
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.33
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.33
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.32
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.29
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.29
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.28
3bos_A	242	Putative DNA replication factor; P-loop containing	99.26
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.25
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.24
3pvs_A	447	Replication-associated recombination protein A; ma	99.24
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.22
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.22
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.2
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.2
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.2
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.19
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.18
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.17
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.16
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.16
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.16
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	99.13
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.12
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.12
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.11
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.09
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.06
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.06
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.06
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.05
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	99.02
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.99
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.99
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.98
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	98.92
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.91
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.9
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.89
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.89
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.88
2r44_A	331	Uncharacterized protein; putative ATPase, structur	98.88
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.87
3co5_A	143	Putative two-component system transcriptional RES	98.87
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.86
2krk_A	86	26S protease regulatory subunit 8; structural geno	98.86
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.86
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	98.86
3kw6_A	78	26S protease regulatory subunit 8; structural geno	98.85
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.84
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.83
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.79
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.79
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.79
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.79
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.78
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.77
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.77
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	98.75
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.73
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.73
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.73
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	98.73
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.72
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.72
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.72
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.71
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.71
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.71
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.7
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.7
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.7
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.69
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.69
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.69
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.69
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.68
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.68
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.67
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.66
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.66
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.66
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.66
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	98.66
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.65
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.65
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.65
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.64
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.62
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.61
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.6
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.6
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.59
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.58
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.57
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.57
1g6h_A	257	High-affinity branched-chain amino acid transport	98.56
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.55
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.52
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.5
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.48
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.47
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.46
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.45
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.45
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.44
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.44
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.43
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.42
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.41
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.41
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.39
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.35
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.35
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.33
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.33
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.32
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.31
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.31
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.29
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.28
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.27
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.27
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.25
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.23
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.21
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.2
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.19
2qgz_A	308	Helicase loader, putative primosome component; str	98.18
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.16
2krk_A	86	26S protease regulatory subunit 8; structural geno	98.13
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.12
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.12
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.1
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.1
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.1
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.08
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.07
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	98.07
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.05
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.03
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.01
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.98
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.97
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.97
3kw6_A	78	26S protease regulatory subunit 8; structural geno	97.97
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.93
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	97.93
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.89
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.88
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.87
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.87
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.87
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.87
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.85
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.83
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.81
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.79
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.79
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	97.79
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.77
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.77
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.76
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.76
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.75
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.74
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.7
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.69
2fna_A	357	Conserved hypothetical protein; structural genomic	97.68
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.68
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	97.68
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.66
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.63
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.61
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.61
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.61
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.6
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.6
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.59
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.59
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.56
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.55
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.55
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.54
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	97.5
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	97.5
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.47
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.47
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.45
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.44
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.43
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.4
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.39
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.39
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.38
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.38
1via_A	175	Shikimate kinase; structural genomics, transferase	97.38
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.37
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.36
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.35
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.34
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.34
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.33
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.33
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.32
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.32
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.32
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.31
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.3
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.3
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.3
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.3
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	97.28
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.28
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.28
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.28
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.26
3io5_A	333	Recombination and repair protein; storage dimer, i	97.26
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.25
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.25
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.24
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.24
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.24
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.23
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.22
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.19
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.19
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.19
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.18
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.18
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.18
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.16
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.16
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.16
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.16
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.15
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.15
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.15
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.15
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.15
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.14
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.13
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.13
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.13
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.12
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.12
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.09
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.09
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.08
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.08
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.06
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.06
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.06
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.05
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.04
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.04
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.03
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.03
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.02
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.02
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.0
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.0
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.0
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.99
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.99
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.99
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.98
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.98
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.97
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.97
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.95
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.94
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.91
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.9
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.9
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.89
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.88
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.88
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.86
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.86
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.86
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.86
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.84
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.84
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.84
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.84
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.82
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.8
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.79
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.79
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.78
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.77
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.77
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.77
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.76
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.75
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.74
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.74
2og2_A	359	Putative signal recognition particle receptor; nuc	96.73
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.71
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.7
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.7
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.69
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.68
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.68
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.67
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.66
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.64
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.63
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	96.62
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.61
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	96.61
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.53
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.52
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.51
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.49
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.49
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.49
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.43
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.4
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.4
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.4
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	96.38
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.36
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.36
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.3
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.27
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.25
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.23
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.23
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.2
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.19
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.12
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.11
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	96.1
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.07
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.05
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.04
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	96.04
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.02
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.02
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.0
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.96
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.94
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.81
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.8
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.76
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.74
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.73
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	95.71
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.7
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.68
2xxa_A	433	Signal recognition particle protein; protein trans	95.68
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.67
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.67
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.63
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.61
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.61
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.6
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	95.57
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.57
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	95.57
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.56
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.55
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.5
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.48
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.44
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.44
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.44
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	95.41
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.37
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.36
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.33
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.32
3b6e_A	216	Interferon-induced helicase C domain-containing P;	95.27
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.24
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.21
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.19
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.18
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.14
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.11
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.11
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.08
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.05
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.97
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	94.94
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.94
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.92
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	94.87
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	94.87
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.86
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	94.85
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.85
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	94.84
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	94.8
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.77
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	94.76
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.76
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.68
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.67
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.63
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.63
3ice_A	422	Transcription termination factor RHO; transcriptio	94.62
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.59
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.57
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	94.54
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.53
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.52
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.5
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.49
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.49
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.43
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.42
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.39
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.39
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.38
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.37
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.34
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.33
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.3
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.29
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	94.27
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	94.25
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.24
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.2
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	94.18
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.18
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.17
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.17
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.16
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.14
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.13
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.13
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	94.08
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.08
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.02
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.02
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	94.02
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.01
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.95
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.94
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	93.93
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	93.91
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	93.86
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	93.83
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.81
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	93.8
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.8
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	93.79
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.79
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.74
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.73
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	93.72
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.7
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.69
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.68
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.67
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	93.66
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	93.65
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	93.63
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.63

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=100.00  E-value=2.5e-49  Score=419.91  Aligned_cols=358  Identities=22%  Similarity=0.347  Sum_probs=237.6

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE   77 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~   77 (390)
                      |.+.-.++|+||++|||++.+|+||+|              ||||+ +|++|. +.++|++||++    +++.+++|+ +
T Consensus       333 dg~~~~~~V~VIaaTN~~d~LD~ALrR--------------~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl-~  397 (806)
T 3cf2_A          333 DGLKQRAHVIVMAATNRPNSIDPALRR--------------FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL-E  397 (806)
T ss_dssp             HHCCGGGCEEEEEECSSTTTSCTTTTS--------------TTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH-H
T ss_pred             hcccccCCEEEEEecCChhhcCHHHhC--------------CcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH-H
Confidence            344456889999999999999999988              99999 777777 47789999987    567889999 8


Q ss_pred             HHHHhhcCCccccccccccccchhhhcCCCC--CCCCCCC--------------------CchhhHhhhcccccCccccc
Q psy11689         78 NVQREEEGIAGENLQRGGGEEGIELREGGQR--NGGEGGI--------------------GLNERVQRIGEGREERRDWE  135 (390)
Q Consensus        78 ~la~~t~G~~g~~l~~~~~ea~~~~~~~~~~--~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~  135 (390)
                      .||+.|+||+|+||..+|.++++.+..+...  .......                    ...+...+....+.+++.|+
T Consensus       398 ~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~  477 (806)
T 3cf2_A          398 QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE  477 (806)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCST
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHH
Confidence            9999999999999999999998764322100  0000000                    01112233344556677777


Q ss_pred             cccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc
Q psy11689        136 GEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY  215 (390)
Q Consensus       136 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~  215 (390)
                               +++|++++|+.+.+.+.+|+++++.|.++++.+++++|||||||||||++|+++|.+++.+|+.+++++++
T Consensus       478 ---------diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~  548 (806)
T 3cf2_A          478 ---------DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL  548 (806)
T ss_dssp             ---------TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred             ---------HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence                     99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH-----HHHHhhcCCCcE---EEeccCHHHHHhcCchhH
Q psy11689        216 SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQ-----TADNAKKPRIPR---TNGGYREQTADTANKPRI  287 (390)
Q Consensus       216 ~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~-----~~~~~~~~~~~~---i~~~~~~~~i~~t~~~~~  287 (390)
                      ++|+|+++++++.+|..|+..+||||||||+|+++..|....     ..+.+.+..++.   +....++.++++||+|+.
T Consensus       549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~  628 (806)
T 3cf2_A          549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI  628 (806)
T ss_dssp             TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred             ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence            999999999999999999999999999999999998874321     111111111100   112345667889998876


Q ss_pred             HHhH-----HHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccc--
Q psy11689        288 QRTK-----REY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREY--  357 (390)
Q Consensus       288 ~r~~-----~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~--  357 (390)
                      +.+.     ++.   ...+|+...|..|+..... +.....++|+..||+.|+|||  ||||+++|++|++.|+++..  
T Consensus       629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~-~~~~~~~~dl~~la~~t~g~S--Gadi~~l~~~A~~~a~r~~~~~  705 (806)
T 3cf2_A          629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR-KSPVAKDVDLEFLAKMTNGFS--GADLTEICQRACKLAIRESIES  705 (806)
T ss_dssp             SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSS-CC--CCC------------------CHHHHHHHHHHHHHHHHHC-
T ss_pred             CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhc-CCCCCCCCCHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHHHHHh
Confidence            4333     322   1125667788888643322 222367899999999999999  99999999999999987632  


Q ss_pred             -----------------------cccChhhhhhhHHHHhcCccccccCCCcccc
Q psy11689        358 -----------------------REQTADTANKPRIQRIGNLSQRNRSSPKKVS  388 (390)
Q Consensus       358 -----------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (390)
                                             ..|+++||.++.-+.-=+.++.+.-.|+++.
T Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~  759 (806)
T 3cf2_A          706 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA  759 (806)
T ss_dssp             ----------------------CCC----CCTTTC---------------CCCC
T ss_pred             hhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence                                   2589999999987777777777777776654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-39  Score=316.17  Aligned_cols=241  Identities=22%  Similarity=0.323  Sum_probs=193.8

Q ss_pred             hhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        122 QRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ......+.|++.|+         ||||++++++++++.+.+|+++|+.|+++++++++|+|||||||||||+||+++|++
T Consensus       135 ~~~~~~~~p~v~~~---------dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          135 SLMMVEKVPDSTYD---------MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             TSCEEECSCSCCGG---------GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             hhccccCCCCCCHH---------HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence            34445567788888         999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHhhcCCCcEEEe
Q psy11689        202 SVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNAKKPRIPRTNG  272 (390)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~~~~~~~~i~~  272 (390)
                      ++.+|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+++..|..         ......+... +--+..
T Consensus       206 ~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~-lDg~~~  284 (405)
T 4b4t_J          206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ-LDGFET  284 (405)
T ss_dssp             HTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHH-HHTTTC
T ss_pred             hCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHh-hhccCC
Confidence            999999999999999999999999999999999999999999999999976521         1111111110 000012


Q ss_pred             ccCHHHHHhcCchhHHHhHH-----Hhh---hhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHH
Q psy11689        273 GYREQTADTANKPRIQRTKR-----EYR---EQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANT  344 (390)
Q Consensus       273 ~~~~~~i~~t~~~~~~r~~~-----~~l---~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l  344 (390)
                      ..++.++++||+|+.+.+.+     +..   ..+|+...|..|+..... .....+++|+..||++|+|||  ||||+++
T Consensus       285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~-~~~l~~dvdl~~lA~~t~G~S--GADi~~l  361 (405)
T 4b4t_J          285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSR-KMNLTRGINLRKVAEKMNGCS--GADVKGV  361 (405)
T ss_dssp             CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT-TSBCCSSCCHHHHHHHCCSCC--HHHHHHH
T ss_pred             CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhc-CCCCCccCCHHHHHHHCCCCC--HHHHHHH
Confidence            34456788999887654433     221   125677788888633221 223357799999999999999  9999999


Q ss_pred             HHHHHHHHHHccccccChhhhhhhHHHHhcC
Q psy11689        345 ANKPRIQRTKREYREQTADTANKPRIQRIGN  375 (390)
Q Consensus       345 ~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~  375 (390)
                      |++|++.|+++++..|+++||.+|+-+.+-+
T Consensus       362 ~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~  392 (405)
T 4b4t_J          362 CTEAGMYALRERRIHVTQEDFELAVGKVMNK  392 (405)
T ss_dssp             HHHHHHHHHHTTCSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcCHHHHHHHHHHHhCc
Confidence            9999999999999999999999998665543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-37  Score=306.82  Aligned_cols=241  Identities=21%  Similarity=0.324  Sum_probs=193.5

Q ss_pred             ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      +.++++|+         ||||+++++++|.+.+.+|+++++.|+.+++++++|+|||||||||||+||+++|++++.+|+
T Consensus       175 ~~p~v~~~---------DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi  245 (437)
T 4b4t_I          175 KSPTESYS---------DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL  245 (437)
T ss_dssp             SSCCCCGG---------GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE
T ss_pred             cCCCCcce---------ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE
Confidence            44555666         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---------HHHHHhhcCCCcEEEeccCHHH
Q psy11689        208 AASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---------QTADNAKKPRIPRTNGGYREQT  278 (390)
Q Consensus       208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---------~~~~~~~~~~~~~i~~~~~~~~  278 (390)
                      .++++++.+.|+|++++.++.+|..|+..+||||||||+|+++..|...         .....+... +-......++.+
T Consensus       246 ~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~-lDg~~~~~~ViV  324 (437)
T 4b4t_I          246 RIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ-LDGFDDRGDVKV  324 (437)
T ss_dssp             EEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHH-HHHCCCSSSEEE
T ss_pred             EEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHH-hhCcCCCCCEEE
Confidence            9999999999999999999999999999999999999999999766211         111111100 000112234566


Q ss_pred             HHhcCchhHH-----HhHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689        279 ADTANKPRIQ-----RTKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI  350 (390)
Q Consensus       279 i~~t~~~~~~-----r~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~  350 (390)
                      |+|||+|+.+     |+.++.   ...+|+...|..|+..... .....+++|++.||+.|+|||  ||||+++|++|++
T Consensus       325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfS--GADI~~l~~eA~~  401 (437)
T 4b4t_I          325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLS--GADIQAMCTEAGL  401 (437)
T ss_dssp             EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCC--HHHHHHHHHHHHH
T ss_pred             EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCC--HHHHHHHHHHHHH
Confidence            8888987764     333432   2236677888888633221 223357799999999999999  9999999999999


Q ss_pred             HHHHccccccChhhhhhhHHHHhcCcccccc
Q psy11689        351 QRTKREYREQTADTANKPRIQRIGNLSQRNR  381 (390)
Q Consensus       351 ~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~  381 (390)
                      .|+++++..|+++||.+|+.+..-+..+++.
T Consensus       402 ~Air~~~~~It~eDf~~Al~rv~~~~~~e~l  432 (437)
T 4b4t_I          402 LALRERRMQVTAEDFKQAKERVMKNKVEENL  432 (437)
T ss_dssp             HHHHTTCSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred             HHHHcCCCccCHHHHHHHHHHHhCCCChhhH
Confidence            9999999999999999999777666555543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-37  Score=308.69  Aligned_cols=237  Identities=22%  Similarity=0.287  Sum_probs=189.9

Q ss_pred             CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcch
Q psy11689        140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYV  219 (390)
Q Consensus       140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~  219 (390)
                      .++++||||+++++++|++.+.+|+.+++.|+.+++.+++|+|||||||||||+||+++|++++.+|+.++++++.+.|+
T Consensus       205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v  284 (467)
T 4b4t_H          205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV  284 (467)
T ss_dssp             SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred             CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence            34444999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---------HHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHh
Q psy11689        220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---------QTADNAKKPRIPRTNGGYREQTADTANKPRIQRT  290 (390)
Q Consensus       220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---------~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~  290 (390)
                      |++++.++.+|..|+..+||||||||+|+++..|...         .....+.. .+-......++.+|++||+|+.+.+
T Consensus       285 Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~-~lDg~~~~~~ViVIaATNrpd~LDp  363 (467)
T 4b4t_H          285 GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELIT-QLDGFDPRGNIKVMFATNRPNTLDP  363 (467)
T ss_dssp             SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHH-HHHSSCCTTTEEEEEECSCTTSBCH
T ss_pred             CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHH-HhhccCCCCcEEEEeCCCCcccCCh
Confidence            9999999999999999999999999999999765221         11111100 0000112234556888998776433


Q ss_pred             H-----HHhh---hhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccCh
Q psy11689        291 K-----REYR---EQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTA  362 (390)
Q Consensus       291 ~-----~~~l---~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~  362 (390)
                      .     ++..   ..+|+...|..|+..... ......++|++.||++|+|||  ||||+++|++|++.|+++++..+++
T Consensus       364 ALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~-~~~l~~dvdl~~LA~~T~GfS--GADI~~l~~eAa~~Air~~~~~it~  440 (467)
T 4b4t_H          364 ALLRPGRIDRKVEFSLPDLEGRANIFRIHSK-SMSVERGIRWELISRLCPNST--GAELRSVCTEAGMFAIRARRKVATE  440 (467)
T ss_dssp             HHHSTTTCCEEECCCCCCHHHHHHHHHHHHT-TSCBCSSCCHHHHHHHCCSCC--HHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred             hhhccccccEEEEeCCcCHHHHHHHHHHHhc-CCCCCCCCCHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHcCCCccCH
Confidence            3     3222   125677788888633221 123356799999999999999  9999999999999999999999999


Q ss_pred             hhhhhhHHHHhcCccccc
Q psy11689        363 DTANKPRIQRIGNLSQRN  380 (390)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~  380 (390)
                      +||.+++-+.+.|..++.
T Consensus       441 ~Df~~Al~kV~~g~~k~s  458 (467)
T 4b4t_H          441 KDFLKAVDKVISGYKKFS  458 (467)
T ss_dssp             HHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHhcCcccch
Confidence            999999988888876543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-37  Score=309.55  Aligned_cols=242  Identities=21%  Similarity=0.303  Sum_probs=186.0

Q ss_pred             CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchh
Q psy11689        141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVG  220 (390)
Q Consensus       141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g  220 (390)
                      ++++||||+++++++|.+.+.+|+++|+.|..+++.+++|+|||||||||||+||+++|++++.+|+.++++++.++|.|
T Consensus       178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G  257 (437)
T 4b4t_L          178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG  257 (437)
T ss_dssp             SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred             CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence            33339999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---------HHHHHhhcCCCcEEEeccCHHHHHhcCchhHHH--
Q psy11689        221 EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---------QTADNAKKPRIPRTNGGYREQTADTANKPRIQR--  289 (390)
Q Consensus       221 ~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---------~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r--  289 (390)
                      ++++.++.+|..|+..+||||||||+|+++..|...         .....+... +--.....++.+|++||+|+.+.  
T Consensus       258 ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~-lDg~~~~~~vivI~ATNrp~~LDpA  336 (437)
T 4b4t_L          258 ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ-MDGFDNLGQTKIIMATNRPDTLDPA  336 (437)
T ss_dssp             HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHH-HHSSSCTTSSEEEEEESSTTSSCTT
T ss_pred             HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHH-hhcccCCCCeEEEEecCCchhhCHH
Confidence            999999999999999999999999999999765221         111111110 00001123455678888877643  


Q ss_pred             ---hHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChh
Q psy11689        290 ---TKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTAD  363 (390)
Q Consensus       290 ---~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~  363 (390)
                         +.++.   ...+|+...|..|+..... .....+++|+..+|+.|+|||  ||||+++|++|++.|++++...|+++
T Consensus       337 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~-~~~~~~d~dl~~lA~~t~G~s--GADi~~l~~eA~~~air~~~~~i~~~  413 (437)
T 4b4t_L          337 LLRPGRLDRKVEIPLPNEAGRLEIFKIHTA-KVKKTGEFDFEAAVKMSDGFN--GADIRNCATEAGFFAIRDDRDHINPD  413 (437)
T ss_dssp             TTSTTSEEEEECCCCCCHHHHHHHHHHHHH-TSCBCSCCCHHHHHHTCCSCC--HHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred             HhCCCccceeeecCCcCHHHHHHHHHHHhc-CCCCCcccCHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence               33322   1225677788888633221 123356799999999999999  99999999999999999999999999


Q ss_pred             hhhhhHHHHhcCccccccCCCcc
Q psy11689        364 TANKPRIQRIGNLSQRNRSSPKK  386 (390)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~  386 (390)
                      ||.+++-+..-+-.......++|
T Consensus       414 d~~~Al~~v~~~~k~e~~~e~~K  436 (437)
T 4b4t_L          414 DLMKAVRKVAEVKKLEGTIEYQK  436 (437)
T ss_dssp             HHHHHHHHHHHTCC---------
T ss_pred             HHHHHHHHHHhccCcccchhhhc
Confidence            99999866554444444444444

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=303.04  Aligned_cols=246  Identities=20%  Similarity=0.295  Sum_probs=193.6

Q ss_pred             ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      +.|++.|+         ||||++++|+++.+.+.+|+.+++.|..+|+.+++|+|||||||||||+||+++|++++.+++
T Consensus       165 ~~p~v~~~---------digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~  235 (428)
T 4b4t_K          165 EKPDVTYA---------DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI  235 (428)
T ss_dssp             SSCSCCGG---------GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCCHH---------HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            44555666         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHhhcCCCcEEEeccCHHH
Q psy11689        208 AASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNAKKPRIPRTNGGYREQT  278 (390)
Q Consensus       208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~~~~~~~~i~~~~~~~~  278 (390)
                      .++++++.+.|+|++++.++.+|..|+..+||||||||+|+++..|..         ..+...+... +--+....++.+
T Consensus       236 ~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~-ldg~~~~~~v~v  314 (428)
T 4b4t_K          236 RVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQ-MDGFDQSTNVKV  314 (428)
T ss_dssp             EEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHH-HHHSCSSCSEEE
T ss_pred             EEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHH-hhCCCCCCCEEE
Confidence            999999999999999999999999999999999999999998876521         1111111110 000112234567


Q ss_pred             HHhcCchhH-----HHhHHHh----hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHH
Q psy11689        279 ADTANKPRI-----QRTKREY----REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPR  349 (390)
Q Consensus       279 i~~t~~~~~-----~r~~~~~----l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~  349 (390)
                      |+|||+++.     +|+.++.    ++.+|+...|..|+..... .....+++|+..||++|+|||  ||||+++|++|+
T Consensus       315 I~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~-~~~l~~~~dl~~lA~~t~G~s--gadi~~l~~eA~  391 (428)
T 4b4t_K          315 IMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS-KMSLAPEADLDSLIIRNDSLS--GAVIAAIMQEAG  391 (428)
T ss_dssp             EEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH-SSCBCTTCCHHHHHHHTTTCC--HHHHHHHHHHHH
T ss_pred             EEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc-CCCCCcccCHHHHHHHCCCCC--HHHHHHHHHHHH
Confidence            888888765     4444432    2235567778777633221 223367799999999999999  999999999999


Q ss_pred             HHHHHccccccChhhhhhhHHHHhcCccccccCCCcc
Q psy11689        350 IQRTKREYREQTADTANKPRIQRIGNLSQRNRSSPKK  386 (390)
Q Consensus       350 ~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (390)
                      +.|+++++..|+++||.+|+.+++-.....+..-|||
T Consensus       392 ~~a~r~~~~~i~~~d~~~A~~~~~~~~~~~~~~d~yk  428 (428)
T 4b4t_K          392 LRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFYK  428 (428)
T ss_dssp             HHHHHTTCSSBCHHHHHHHHHHHSCSCCCSSCCCSCC
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHhhCccCCccHhhhhC
Confidence            9999999999999999999977665444444444443

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-37  Score=308.98  Aligned_cols=245  Identities=22%  Similarity=0.312  Sum_probs=193.4

Q ss_pred             cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .+.|+++|+         ||||+++++++|.+.+.+|+.+|+.|+++++++++|+|||||||||||+||+|+|++++.+|
T Consensus       173 ~~~p~~t~~---------digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f  243 (434)
T 4b4t_M          173 DEKPTETYS---------DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF  243 (434)
T ss_dssp             ESSCSCCGG---------GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred             CCCCCCChH---------hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE
Confidence            345666666         99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---------HHHHHhhcCCCcEEEeccCHH
Q psy11689        207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---------QTADNAKKPRIPRTNGGYREQ  277 (390)
Q Consensus       207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---------~~~~~~~~~~~~~i~~~~~~~  277 (390)
                      +.++++++.+.|+|++++.++.+|..|+..+||||||||+|+++..|...         .....+... +-......++.
T Consensus       244 ~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~-ldg~~~~~~Vi  322 (434)
T 4b4t_M          244 LKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQ-LDGFSSDDRVK  322 (434)
T ss_dssp             EEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHH-HTTSCSSCSSE
T ss_pred             EEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHH-hhccCCCCCEE
Confidence            99999999999999999999999999999999999999999998765221         111111110 00011234566


Q ss_pred             HHHhcCchhHH-----HhHHHhh---hhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHH
Q psy11689        278 TADTANKPRIQ-----RTKREYR---EQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPR  349 (390)
Q Consensus       278 ~i~~t~~~~~~-----r~~~~~l---~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~  349 (390)
                      +++|||+|+.+     |+.++..   ..+|+...|..|+..... .....+++|+..||++|+|||  ||||+++|++|+
T Consensus       323 VIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~-~~~~~~dvdl~~lA~~t~G~s--GADi~~l~~eA~  399 (434)
T 4b4t_M          323 VLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSR-KMTTDDDINWQELARSTDEFN--GAQLKAVTVEAG  399 (434)
T ss_dssp             EEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHH-HSCBCSCCCHHHHHHHCSSCC--HHHHHHHHHHHH
T ss_pred             EEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCC--HHHHHHHHHHHH
Confidence            78889987764     3333222   226677788888632221 123356799999999999999  999999999999


Q ss_pred             HHHHHccccccChhhhhhhHHHHhcCccccccCCCcc
Q psy11689        350 IQRTKREYREQTADTANKPRIQRIGNLSQRNRSSPKK  386 (390)
Q Consensus       350 ~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (390)
                      +.|++++...|+++||.+++-...-+  +.+.++||+
T Consensus       400 ~~a~r~~~~~i~~~Df~~Al~~v~~~--~~~~i~~Ya  434 (434)
T 4b4t_M          400 MIALRNGQSSVKHEDFVEGISEVQAR--KSKSVSFYA  434 (434)
T ss_dssp             HHHHHHTCSSBCHHHHHHHHHSCSSS--CCCCCCCCC
T ss_pred             HHHHHcCCCCcCHHHHHHHHHHHhCC--CCcCccccC
Confidence            99999999999999999998655433  223455553

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.96  E-value=7.5e-31  Score=278.45  Aligned_cols=226  Identities=23%  Similarity=0.320  Sum_probs=177.4

Q ss_pred             CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchh
Q psy11689        141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVG  220 (390)
Q Consensus       141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g  220 (390)
                      +.++||+|+++++++|++.+.+|+++|+.|+.+++.+|+++|||||||||||+||+++|++++.+++.++++++.+.|.|
T Consensus       201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g  280 (806)
T 3cf2_A          201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG  280 (806)
T ss_dssp             CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence            33349999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HHHHHHhhcCCCcEEEeccCHHHHHhcCchhHH-----H
Q psy11689        221 EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQTADNAKKPRIPRTNGGYREQTADTANKPRIQ-----R  289 (390)
Q Consensus       221 ~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~-----r  289 (390)
                      ++++.++.+|..|+.++||||||||+|+++..+..      ......+... +..+....++.+|++||+++.+     |
T Consensus       281 ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~-mdg~~~~~~V~VIaaTN~~d~LD~ALrR  359 (806)
T 3cf2_A          281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTL-MDGLKQRAHVIVMAATNRPNSIDPALRR  359 (806)
T ss_dssp             HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTH-HHHCCGGGCEEEEEECSSTTTSCTTTTS
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHH-HhcccccCCEEEEEecCChhhcCHHHhC
Confidence            99999999999999999999999999999976532      1111111110 0001122345567888887654     3


Q ss_pred             hHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccc---------
Q psy11689        290 TKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREY---------  357 (390)
Q Consensus       290 ~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~---------  357 (390)
                      +.++.   ...+|+...|..|+..... .....+++|+..+|.+|+||+  |+||++||++|++.|++|..         
T Consensus       360 ~GRFd~~I~i~~Pd~~~R~~IL~~~l~-~~~~~~dvdl~~lA~~T~Gfs--gaDL~~Lv~eA~~~A~~r~~~~i~~~~~~  436 (806)
T 3cf2_A          360 FGRFDREVDIGIPDATGRLEILQIHTK-NMKLADDVDLEQVANETHGHV--GADLAALCSEAALQAIRKKMDLIDLEDET  436 (806)
T ss_dssp             TTSSCEEEECCCCCHHHHHHHHHHTCS-SSEECTTCCHHHHHHHCCSCC--HHHHHHHHHHHHHHHHHHHHHHGGGTCCC
T ss_pred             CcccceEEecCCCCHHHHHHHHHHHhc-CCCCCcccCHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhccccccccccc
Confidence            32322   2225677888888633221 122367899999999999999  99999999999999988743         


Q ss_pred             --------cccChhhhhhhHH
Q psy11689        358 --------REQTADTANKPRI  370 (390)
Q Consensus       358 --------~~i~~~~~~~~~~  370 (390)
                              ..++++||..+.-
T Consensus       437 ~~~e~~~~~~v~~~Df~~Al~  457 (806)
T 3cf2_A          437 IDAEVMNSLAVTMDDFRWALS  457 (806)
T ss_dssp             CSHHHHHHCEECTTHHHHHHS
T ss_pred             cchhhhccceeeHHHHHHHHH
Confidence                    2467777777653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=225.95  Aligned_cols=236  Identities=22%  Similarity=0.340  Sum_probs=171.3

Q ss_pred             ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      +.+++.|+         ||+|++++++++.+.+.+|+.+++.++++++..+.+++|+||||||||+|++++|.+.+.+++
T Consensus         3 ~~~~~~~~---------di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i   73 (274)
T 2x8a_A            3 TVPNVTWA---------DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFI   73 (274)
T ss_dssp             ------------------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCCHH---------HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence            34677888         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHH----------HHHhhcCCCcEEEeccCHH
Q psy11689        208 AASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQT----------ADNAKKPRIPRTNGGYREQ  277 (390)
Q Consensus       208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~----------~~~~~~~~~~~i~~~~~~~  277 (390)
                      .+++.++...+.++.++.++.+|+.+....|+++|+||++.++..+.....          ...+...     .......
T Consensus        74 ~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg-----~~~~~~i  148 (274)
T 2x8a_A           74 SVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGL-----EARQQVF  148 (274)
T ss_dssp             EEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTC-----CSTTCEE
T ss_pred             EEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcc-----cccCCEE
Confidence            999999988899999999999999999999999999999998765432111          1111000     0011223


Q ss_pred             HHHhcCchhHHHhHHHh--------hhhcCCchhHHHhhcccccc--cCCCCCCCCcchhhhcC--CCCCCCcHHHHHHH
Q psy11689        278 TADTANKPRIQRTKREY--------REQTADTAHKTRISRTNRGY--REKTADTANKPRIPRTN--RGYREYSAQNANTA  345 (390)
Q Consensus       278 ~i~~t~~~~~~r~~~~~--------l~~l~~~~~r~~I~~~n~~~--r~~~~~~vdl~~la~~t--~gfs~~gaDL~~l~  345 (390)
                      +++++|+|+++.+.+..        ...+|+...|..|+......  ......++|+..+|..|  +|||  ||||+++|
T Consensus       149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~s--gadl~~l~  226 (274)
T 2x8a_A          149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYT--GADLSALV  226 (274)
T ss_dssp             EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCC--HHHHHHHH
T ss_pred             EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcC--HHHHHHHH
Confidence            45677877775444321        12356677887776433221  12235689999999875  4999  99999999


Q ss_pred             HHHHHHHHHcc-----------ccccChhhhhhhHHHHhcCcccc
Q psy11689        346 NKPRIQRTKRE-----------YREQTADTANKPRIQRIGNLSQR  379 (390)
Q Consensus       346 ~~A~~~a~~r~-----------~~~i~~~~~~~~~~~~~~~~~~~  379 (390)
                      ++|++.|.++.           ...|+++||.+++-...-+..++
T Consensus       227 ~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~~~  271 (274)
T 2x8a_A          227 REASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKK  271 (274)
T ss_dssp             HHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC---
T ss_pred             HHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCChh
Confidence            99999998762           23699999999986655544443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.94  E-value=2.8e-28  Score=235.77  Aligned_cols=212  Identities=22%  Similarity=0.382  Sum_probs=160.8

Q ss_pred             ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh-ccch
Q psy11689        128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-VYRV  206 (390)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-~~~~  206 (390)
                      +.+.+.|+         ||+|++++++.+.+.+.+|+++++.|.. ...++.++||+||||||||+||+++|.++ +.++
T Consensus         5 ~~~~~~~~---------di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~   74 (322)
T 1xwi_A            5 ERPNVKWS---------DVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF   74 (322)
T ss_dssp             ECCCCCGG---------GSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred             cCCCCCHH---------HhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence            45677888         9999999999999999999999999884 35678999999999999999999999999 8899


Q ss_pred             hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HH----HHHHhhcCCCcEEEeccCH
Q psy11689        207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQ----TADNAKKPRIPRTNGGYRE  276 (390)
Q Consensus       207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~----~~~~~~~~~~~~i~~~~~~  276 (390)
                      +.++++++...|.|..++.++.+|..|...+|+||||||+|.+...+..      ..    ....+.....    ...++
T Consensus        75 ~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~----~~~~v  150 (322)
T 1xwi_A           75 FSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV----DNDGI  150 (322)
T ss_dssp             EEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS----CCTTE
T ss_pred             EEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc----cCCCE
Confidence            9999999999999999999999999999999999999999999764421      11    1111111100    11233


Q ss_pred             HHHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689        277 QTADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI  350 (390)
Q Consensus       277 ~~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~  350 (390)
                      .++++||+++.+...+      .....+|+...|..|+...........++.++..||+.|+||+  |+||+++|++|++
T Consensus       151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~s--gadl~~l~~~A~~  228 (322)
T 1xwi_A          151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS--GADISIIVRDALM  228 (322)
T ss_dssp             EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCC--HHHHHHHHHHHHT
T ss_pred             EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence            4556666655432211      1122355667777775433322222245678899999999999  9999999999999


Q ss_pred             HHHHc
Q psy11689        351 QRTKR  355 (390)
Q Consensus       351 ~a~~r  355 (390)
                      .|.++
T Consensus       229 ~a~r~  233 (322)
T 1xwi_A          229 QPVRK  233 (322)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99876

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.94  E-value=5.6e-28  Score=231.41  Aligned_cols=241  Identities=22%  Similarity=0.376  Sum_probs=182.4

Q ss_pred             hhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        123 RIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++...+.+.+.|+         +|+|++++++.+.+.+.+++.+++.|.++++.++.++||+||||||||+|++++|.++
T Consensus         3 ~~~~~~~~~~~~~---------di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A            3 RETVVEVPQVTWE---------DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCCCEECCCCCGG---------GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             ccccccCCCCCHH---------HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            3444566788888         9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh-------------HHHHHHHhhcCCCcE
Q psy11689        203 VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY-------------REQTADNAKKPRIPR  269 (390)
Q Consensus       203 ~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~-------------~~~~~~~~~~~~~~~  269 (390)
                      +.+++.++++++...+.|..++.++.+|..|....|+||||||+|.+...+.             .......+....   
T Consensus        74 ~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~---  150 (301)
T 3cf0_A           74 QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS---  150 (301)
T ss_dssp             TCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC---
T ss_pred             CCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc---
Confidence            9999999999998888898888899999999999999999999998765432             122233332211   


Q ss_pred             EEeccCHHHHHhcCchhHHHhH-----HH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHH
Q psy11689        270 TNGGYREQTADTANKPRIQRTK-----RE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQN  341 (390)
Q Consensus       270 i~~~~~~~~i~~t~~~~~~r~~-----~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL  341 (390)
                        ...++.++++||+++.+.+.     ++   ....+|+...|..|+...... .....++++..++..|+||+  |+||
T Consensus       151 --~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~-~~~~~~~~~~~la~~~~g~s--g~dl  225 (301)
T 3cf0_A          151 --TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK-SPVAKDVDLEFLAKMTNGFS--GADL  225 (301)
T ss_dssp             --TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-SCBCSSCCHHHHHHTCSSCC--HHHH
T ss_pred             --CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc-CCCCccchHHHHHHHcCCCC--HHHH
Confidence              12234456677776543221     11   111245566666665332221 22345789999999999999  9999


Q ss_pred             HHHHHHHHHHHHHccc-------------------------cccChhhhhhhHHHHhcCccccc
Q psy11689        342 ANTANKPRIQRTKREY-------------------------REQTADTANKPRIQRIGNLSQRN  380 (390)
Q Consensus       342 ~~l~~~A~~~a~~r~~-------------------------~~i~~~~~~~~~~~~~~~~~~~~  380 (390)
                      +++|++|.+.|..+..                         ..++++||.++.-..-.+.++.+
T Consensus       226 ~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~  289 (301)
T 3cf0_A          226 TEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND  289 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHH
Confidence            9999999999876532                         25788888888765555555443

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.94  E-value=5e-28  Score=233.88  Aligned_cols=214  Identities=23%  Similarity=0.366  Sum_probs=162.7

Q ss_pred             cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .+.+++.|+         +|+|++++++.+.+.+.+|..+++.+.. +..++.++||+||||||||+||+++|.+++.++
T Consensus        10 ~~~~~~~~~---------di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~   79 (322)
T 3eie_A           10 SEKPNVKWE---------DVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTF   79 (322)
T ss_dssp             EECCCCCGG---------GSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE
T ss_pred             ecCCCCCHH---------HhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE
Confidence            355677787         9999999999999999999999998876 456788999999999999999999999999999


Q ss_pred             hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH----------HHHHHHhhcCCCcEEEeccCH
Q psy11689        207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR----------EQTADNAKKPRIPRTNGGYRE  276 (390)
Q Consensus       207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~----------~~~~~~~~~~~~~~i~~~~~~  276 (390)
                      +.++++++...|.|+.+..++.+|..|+..+|+||||||+|.+...+..          ......+....    ....++
T Consensus        80 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----~~~~~v  155 (322)
T 3eie_A           80 FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQGV  155 (322)
T ss_dssp             EEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----TSCCCE
T ss_pred             EEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----ccCCce
Confidence            9999999999999999999999999999999999999999999875532          11222221110    011223


Q ss_pred             HHHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689        277 QTADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI  350 (390)
Q Consensus       277 ~~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~  350 (390)
                      .++++||+++.+...+      .....+|+...|..|+...........++.++..|+++|+||+  |+||.++|++|++
T Consensus       156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~s--g~di~~l~~~a~~  233 (322)
T 3eie_A          156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYS--GSDIAVVVKDALM  233 (322)
T ss_dssp             EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCC--HHHHHHHHHHHTT
T ss_pred             EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence            3455666654432111      1112356677777776443333333345678899999999999  9999999999999


Q ss_pred             HHHHcc
Q psy11689        351 QRTKRE  356 (390)
Q Consensus       351 ~a~~r~  356 (390)
                      .|.++.
T Consensus       234 ~a~r~~  239 (322)
T 3eie_A          234 QPIRKI  239 (322)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.93  E-value=2.2e-27  Score=232.47  Aligned_cols=215  Identities=23%  Similarity=0.361  Sum_probs=155.0

Q ss_pred             cccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        125 GEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      +....+.+.|+         +|+|++.+++.+.+.+.+++.+++.|.. +..++.++||+||||||||+||+++|.+++.
T Consensus        41 ~~~~~~~~~~~---------di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~  110 (355)
T 2qp9_X           41 ILSEKPNVKWE---------DVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS  110 (355)
T ss_dssp             ------CCCGG---------GSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             hcccCCCCCHH---------HhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence            33445667777         9999999999999999999999999886 4577889999999999999999999999999


Q ss_pred             chhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH----------HHHHHHhhcCCCcEEEecc
Q psy11689        205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR----------EQTADNAKKPRIPRTNGGY  274 (390)
Q Consensus       205 ~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~----------~~~~~~~~~~~~~~i~~~~  274 (390)
                      +++.++++++...+.|..++.++.+|..|...+|+||||||+|.+...+..          +.....+....    ....
T Consensus       111 ~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----~~~~  186 (355)
T 2qp9_X          111 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----NDSQ  186 (355)
T ss_dssp             EEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------C
T ss_pred             CEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----ccCC
Confidence            999999999999999999999999999999999999999999999876432          11111111110    0112


Q ss_pred             CHHHHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHH
Q psy11689        275 REQTADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKP  348 (390)
Q Consensus       275 ~~~~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A  348 (390)
                      ++.++++||+++.+...+      .....+|+...|..|+...........++.++..||+.|+||+  |+||.++|++|
T Consensus       187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~s--g~dl~~l~~~A  264 (355)
T 2qp9_X          187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYS--GSDIAVVVKDA  264 (355)
T ss_dssp             CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCC--HHHHHHHHHHH
T ss_pred             CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCC--HHHHHHHHHHH
Confidence            344566667664322111      1112355666777775433322222245678899999999999  99999999999


Q ss_pred             HHHHHHc
Q psy11689        349 RIQRTKR  355 (390)
Q Consensus       349 ~~~a~~r  355 (390)
                      ++.|.++
T Consensus       265 ~~~a~~~  271 (355)
T 2qp9_X          265 LMQPIRK  271 (355)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999876

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.93  E-value=2.7e-25  Score=224.45  Aligned_cols=232  Identities=24%  Similarity=0.337  Sum_probs=172.4

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHH
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAE  223 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~  223 (390)
                      +||+|.+++++++.+.+.. +..+..|.+++...+.++||+||||||||+|++++|.+.+.+++.++++++...+.|.+.
T Consensus        16 ~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~   94 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGA   94 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHH
T ss_pred             HHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccH
Confidence            3999999999999999876 678889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---------HHHHHhhcCCCcEEEeccCHHHHHhcCchhHH-----H
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---------QTADNAKKPRIPRTNGGYREQTADTANKPRIQ-----R  289 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---------~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~-----r  289 (390)
                      +.++.+|..|+..+|+||||||+|.+...+...         .....+... +..+....++.++++||+++.+     |
T Consensus        95 ~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~-ld~~~~~~~viVIaaTn~~~~Ld~allR  173 (476)
T 2ce7_A           95 ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVE-MDGFDSKEGIIVMAATNRPDILDPALLR  173 (476)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHH-HHHSCGGGTEEEEEEESCGGGSCGGGGS
T ss_pred             HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHH-HhccCCCCCEEEEEecCChhhhchhhcc
Confidence            999999999999999999999999998754321         111111100 0000011233445666666543     2


Q ss_pred             hHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhh
Q psy11689        290 TKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTAN  366 (390)
Q Consensus       290 ~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~  366 (390)
                      +.++.   ...+|+...|..|+..... +....+++++..+|..|+||+  |+||+++|++|++.|.+++...|++++|.
T Consensus       174 ~gRFd~~i~i~~Pd~~~R~~Il~~~~~-~~~l~~~v~l~~la~~t~G~s--gadL~~lv~~Aal~A~~~~~~~I~~~dl~  250 (476)
T 2ce7_A          174 PGRFDKKIVVDPPDMLGRKKILEIHTR-NKPLAEDVNLEIIAKRTPGFV--GADLENLVNEAALLAAREGRDKITMKDFE  250 (476)
T ss_dssp             TTSSCEEEECCCCCHHHHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCC--HHHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred             cCcceeEeecCCCCHHHHHHHHHHHHH-hCCCcchhhHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHcCCCeecHHHHH
Confidence            22211   1124556667666532221 123356788999999999999  99999999999999999888899999999


Q ss_pred             hhHHHHhcCccccc
Q psy11689        367 KPRIQRIGNLSQRN  380 (390)
Q Consensus       367 ~~~~~~~~~~~~~~  380 (390)
                      .++...+.|.+.+.
T Consensus       251 ~al~~v~~~~~~~~  264 (476)
T 2ce7_A          251 EAIDRVIAGPARKS  264 (476)
T ss_dssp             HHHHHHC-------
T ss_pred             HHHHHHhcCccccc
Confidence            99998888765543

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.92  E-value=2.6e-26  Score=231.33  Aligned_cols=219  Identities=21%  Similarity=0.341  Sum_probs=153.2

Q ss_pred             cccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh-c
Q psy11689        125 GEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-V  203 (390)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-~  203 (390)
                      +....+.+.|+         +|+|++.+++.+.+.+.+|+.+++.|.. ...++.++||+||||||||+||+++|.++ +
T Consensus       124 i~~~~~~~~~~---------di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~  193 (444)
T 2zan_A          124 IVIERPNVKWS---------DVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANN  193 (444)
T ss_dssp             CBCCCCCCCGG---------GSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCS
T ss_pred             eeccCCCCCHH---------HhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence            33445566666         9999999999999999999999988874 34677999999999999999999999999 8


Q ss_pred             cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH------HHHHHHhhcCCCcEEEeccCHH
Q psy11689        204 YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR------EQTADNAKKPRIPRTNGGYREQ  277 (390)
Q Consensus       204 ~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~------~~~~~~~~~~~~~~i~~~~~~~  277 (390)
                      .+++.++++++...|.|..+..++.+|..+...+|+||||||+|.+...+..      ......+....-.......++.
T Consensus       194 ~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~  273 (444)
T 2zan_A          194 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL  273 (444)
T ss_dssp             SEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred             CCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence            8999999999999999988888999999999999999999999999764321      1222222221100000123445


Q ss_pred             HHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHH
Q psy11689        278 TADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQ  351 (390)
Q Consensus       278 ~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~  351 (390)
                      +|++||+++.+.+.+      .....+|+...|..|+...........++.++..||+.|+||+  |+||.++|++|++.
T Consensus       274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~s--gadl~~l~~~a~~~  351 (444)
T 2zan_A          274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYS--GADISIIVRDALMQ  351 (444)
T ss_dssp             EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCC--HHHHHHHHHHHHTH
T ss_pred             EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCC--HHHHHHHHHHHHHH
Confidence            566777765432211      1112255666677765333322222245678899999999999  99999999999999


Q ss_pred             HHHc
Q psy11689        352 RTKR  355 (390)
Q Consensus       352 a~~r  355 (390)
                      |+++
T Consensus       352 a~r~  355 (444)
T 2zan_A          352 PVRK  355 (444)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9876

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.92  E-value=5e-25  Score=205.63  Aligned_cols=231  Identities=23%  Similarity=0.324  Sum_probs=169.3

Q ss_pred             ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC
Q psy11689        137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS  216 (390)
Q Consensus       137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~  216 (390)
                      ++....+++++|++.+++.+.+.+.. +.+++.++.++...+.+++|+||||||||++++++|++++.+++.+++.++..
T Consensus         5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~   83 (257)
T 1lv7_A            5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE   83 (257)
T ss_dssp             CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred             cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence            33444455999999999999998876 77788888888888999999999999999999999999999999999999988


Q ss_pred             cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH-------------HHHHHHhhcCCCcEEEeccCHHHHHhcC
Q psy11689        217 PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR-------------EQTADNAKKPRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       217 ~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~-------------~~~~~~~~~~~~~~i~~~~~~~~i~~t~  283 (390)
                      .+.+..++.++.+|..|....|+++|+||+|.+...+..             ......+....     ...+..++++||
T Consensus        84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~~~~~vI~~tn  158 (257)
T 1lv7_A           84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----GNEGIIVIAATN  158 (257)
T ss_dssp             SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----SSSCEEEEEEES
T ss_pred             HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----cCCCEEEEEeeC
Confidence            888888889999999999999999999999887653311             11111111110     112234455666


Q ss_pred             chhHH-----HhHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy11689        284 KPRIQ-----RTKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR  355 (390)
Q Consensus       284 ~~~~~-----r~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r  355 (390)
                      +++.+     ++.++.   ...+|+...|..|+.... .+....+++++..++..++||+  ++||++++.+|+..|..+
T Consensus       159 ~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~-~~~~l~~~~~~~~la~~~~G~~--~~dl~~l~~~a~~~a~~~  235 (257)
T 1lv7_A          159 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM-RRVPLAPDIDAAIIARGTPGFS--GADLANLVNEAALFAARG  235 (257)
T ss_dssp             CTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-TTSCBCTTCCHHHHHHTCTTCC--HHHHHHHHHHHHHHHHHT
T ss_pred             CchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH-hcCCCCccccHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHh
Confidence            65432     211111   112455666666653221 1223356688889999999999  999999999999999999


Q ss_pred             cccccChhhhhhhHHHHhcCc
Q psy11689        356 EYREQTADTANKPRIQRIGNL  376 (390)
Q Consensus       356 ~~~~i~~~~~~~~~~~~~~~~  376 (390)
                      +...|+++|+.+++-....|.
T Consensus       236 ~~~~i~~~~~~~a~~~~~~~~  256 (257)
T 1lv7_A          236 NKRVVSMVEFEKAKDKIMMGL  256 (257)
T ss_dssp             TCSSBCHHHHHHHHHHHTTCC
T ss_pred             CCCcccHHHHHHHHHHHhcCC
Confidence            989999999999998777664

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=1.4e-24  Score=205.26  Aligned_cols=231  Identities=23%  Similarity=0.360  Sum_probs=176.2

Q ss_pred             ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      ..+.+.|+         +++|++.+++.+.+.+..++.+++.+..+++.++.++||+||||||||+|++++|.+++.+++
T Consensus        10 ~~~~~~~~---------~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~   80 (285)
T 3h4m_A           10 ERPNVRYE---------DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI   80 (285)
T ss_dssp             SSCCCCGG---------GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCCHH---------HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            34556677         999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh----------hHHHHHHHhhcC-CCcEEEeccCH
Q psy11689        208 AASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE----------YREQTADNAKKP-RIPRTNGGYRE  276 (390)
Q Consensus       208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r----------~~~~~~~~~~~~-~~~~i~~~~~~  276 (390)
                      .+.+.++...+.+.....+..+|..+....|+||||||++.+...+          ........+... ..   ....+.
T Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---~~~~~~  157 (285)
T 3h4m_A           81 RVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF---DARGDV  157 (285)
T ss_dssp             EEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT---CSSSSE
T ss_pred             EEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC---CCCCCE
Confidence            9999999999999999999999999999999999999999986322          111121111110 00   001123


Q ss_pred             HHHHhcCchhHHHhH-----HH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHH
Q psy11689        277 QTADTANKPRIQRTK-----RE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKP  348 (390)
Q Consensus       277 ~~i~~t~~~~~~r~~-----~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A  348 (390)
                      .+++++|+++.+...     ++   .....++...+..|+.... .......++++..++..+.||+  ++||+.+++.|
T Consensus       158 ~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~-~~~~~~~~~~~~~l~~~~~g~~--~~~i~~l~~~a  234 (285)
T 3h4m_A          158 KIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHT-RKMNLAEDVNLEEIAKMTEGCV--GAELKAICTEA  234 (285)
T ss_dssp             EEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHH-TTSCBCTTCCHHHHHHHCTTCC--HHHHHHHHHHH
T ss_pred             EEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHH-hcCCCCCcCCHHHHHHHcCCCC--HHHHHHHHHHH
Confidence            345566655442211     11   1112445666666653221 1222346688999999999999  99999999999


Q ss_pred             HHHHHHccccccChhhhhhhHHHHh
Q psy11689        349 RIQRTKREYREQTADTANKPRIQRI  373 (390)
Q Consensus       349 ~~~a~~r~~~~i~~~~~~~~~~~~~  373 (390)
                      ...|..++...|+.+|+.++.-...
T Consensus       235 ~~~a~~~~~~~I~~~d~~~al~~~~  259 (285)
T 3h4m_A          235 GMNAIRELRDYVTMDDFRKAVEKIM  259 (285)
T ss_dssp             HHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcCCHHHHHHHHHHHH
Confidence            9999999999999999999986554

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.91  E-value=1.8e-24  Score=219.69  Aligned_cols=233  Identities=23%  Similarity=0.333  Sum_probs=176.3

Q ss_pred             CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhh
Q psy11689        142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE  221 (390)
Q Consensus       142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~  221 (390)
                      .|++|+|.++++.++.+++.. +..+..|.+++...+.+++|+||||||||+|++++|.+++.+++.+++.++...+.+.
T Consensus        29 ~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~  107 (499)
T 2dhr_A           29 TFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV  107 (499)
T ss_dssp             CTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTH
T ss_pred             CHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhh
Confidence            334999999999999999876 6778888888888999999999999999999999999999999999999998888998


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh---------HHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHH---
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEY---------REQTADNAKKPRIPRTNGGYREQTADTANKPRIQR---  289 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~---------~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r---  289 (390)
                      ..+.++.+|+.+....|+++|+||+|.+...+.         .......+... +.-........+++++|+|+.+.   
T Consensus       108 ~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~-Ldg~~~~~~viviAatn~p~~LD~aL  186 (499)
T 2dhr_A          108 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGFEKDTAIVVMAATNRPDILDPAL  186 (499)
T ss_dssp             HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH-GGGCCSSCCCEEEECCSCGGGSCTTT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH-hcccccCccEEEEEecCChhhcCccc
Confidence            888899999999888999999999998865332         11111111100 00000011223456667665532   


Q ss_pred             --hHHHh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhh
Q psy11689        290 --TKREY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADT  364 (390)
Q Consensus       290 --~~~~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~  364 (390)
                        +.++.   ...+|+...|..|+.... ......+++++..+|..|+||+  |+||+++|++|++.|++++...|+++|
T Consensus       187 lr~gRfdr~i~i~~Pd~~~R~~IL~~~~-~~~~l~~dv~l~~lA~~t~G~~--gadL~~lv~~Aa~~A~~~~~~~It~~d  263 (499)
T 2dhr_A          187 LRPGRFDRQIAIDAPDVKGREQILRIHA-RGKPLAEDVDLALLAKRTPGFV--GADLENLLNEAALLAAREGRRKITMKD  263 (499)
T ss_dssp             SSTTSSCCEEECCCCCHHHHHHHHHHTT-SSSCCCCSSTTHHHHTTSCSCC--HHHHHHHHHHHHHHHTTTCCSSCCSHH
T ss_pred             ccccccceEEecCCCCHHHHHHHHHHHH-hcCCCChHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhCCCccCHHH
Confidence              22221   122556677777753322 1223366789999999999999  999999999999999988888999999


Q ss_pred             hhhhHHHHhcCcccc
Q psy11689        365 ANKPRIQRIGNLSQR  379 (390)
Q Consensus       365 ~~~~~~~~~~~~~~~  379 (390)
                      |..++...+.|.+.+
T Consensus       264 l~~al~~v~~~~~~~  278 (499)
T 2dhr_A          264 LEEAADRVMMLPAKK  278 (499)
T ss_dssp             HHHHHHHHTTCSSSS
T ss_pred             HHHHHHHHhcccccc
Confidence            999999888886654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.91  E-value=1.2e-24  Score=202.93  Aligned_cols=231  Identities=21%  Similarity=0.286  Sum_probs=152.5

Q ss_pred             CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhh
Q psy11689        142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE  221 (390)
Q Consensus       142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~  221 (390)
                      .+++++|++.+++.+.+.+.. +.+++.|..++...+.++||+||||||||++++++|.+.+.+++.+++.++...+.+.
T Consensus         4 ~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~   82 (262)
T 2qz4_A            4 SFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGL   82 (262)
T ss_dssp             CTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTH
T ss_pred             CHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccCh
Confidence            344999999999999999876 7788888888999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH--------------HHHHHhhcCCCcEEEeccCHHHHHhcCchhH
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE--------------QTADNAKKPRIPRTNGGYREQTADTANKPRI  287 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~--------------~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~  287 (390)
                      ....++.+|..+....|+||||||+|.+...+...              .....+....     ...+..+++++|.++.
T Consensus        83 ~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----~~~~~~vi~~tn~~~~  157 (262)
T 2qz4_A           83 GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-----TTDHVIVLASTNRADI  157 (262)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC-----TTCCEEEEEEESCGGG
T ss_pred             hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-----CCCCEEEEecCCChhh
Confidence            88899999999999999999999999997654221              1111111110     0122334555555443


Q ss_pred             H-----HhHHH---hhhhcCCchhHHHhhcccccccCCC-CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccc
Q psy11689        288 Q-----RTKRE---YREQTADTAHKTRISRTNRGYREKT-ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYR  358 (390)
Q Consensus       288 ~-----r~~~~---~l~~l~~~~~r~~I~~~n~~~r~~~-~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~  358 (390)
                      +     +..++   ....+|+..++..|+.......... ..+..+..+++.+.||+  |+||.+++++|+..|.+++..
T Consensus       158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~--~~~l~~l~~~a~~~a~~~~~~  235 (262)
T 2qz4_A          158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFS--GADIANICNEAALHAAREGHT  235 (262)
T ss_dssp             GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCC--HHHHHHHHHHHHTC-------
T ss_pred             cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHcCCC
Confidence            2     21111   1122455666666653222111111 11223468899999999  999999999999999999889


Q ss_pred             ccChhhhhhhHHHHhcCccccc
Q psy11689        359 EQTADTANKPRIQRIGNLSQRN  380 (390)
Q Consensus       359 ~i~~~~~~~~~~~~~~~~~~~~  380 (390)
                      .|+++++..++-....|..+++
T Consensus       236 ~i~~~d~~~a~~~~~~~~~~~~  257 (262)
T 2qz4_A          236 SVHTLNFEYAVERVLAGTAKKS  257 (262)
T ss_dssp             -CCBCCHHHHHHHHHHHHHCC-
T ss_pred             CCCHHHHHHHHHHhccChhhhh
Confidence            9999999999988887776655

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.91  E-value=9.2e-25  Score=207.88  Aligned_cols=237  Identities=23%  Similarity=0.305  Sum_probs=170.1

Q ss_pred             hhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        122 QRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+......+...|+         +++|.+.+++.+.+.+..+..+++.|..+. .++.++||+||||||||++++++|.+
T Consensus         8 ~~~~~~~~~~~~~~---------~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A            8 LDEIVEGGAKVEWT---------DIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             HTTTBCCSSCCCGG---------GSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             HHHhccCCCCCCHH---------HhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence            34444556677787         999999999999999999888888887665 56789999999999999999999999


Q ss_pred             hccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH----------HHHHHhhcCCCcEEE
Q psy11689        202 SVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE----------QTADNAKKPRIPRTN  271 (390)
Q Consensus       202 ~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~----------~~~~~~~~~~~~~i~  271 (390)
                      ++.+++.++++++...+.+..++.++.+|..+...+|++|||||+|.+.+.+...          .....+....  ...
T Consensus        78 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~  155 (297)
T 3b9p_A           78 CSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP--GNP  155 (297)
T ss_dssp             TTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred             hCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc--ccC
Confidence            9999999999999999999999999999999999999999999999998754321          1111111111  011


Q ss_pred             eccCHHHHHhcCchhH-----HHhH-HHhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHH
Q psy11689        272 GGYREQTADTANKPRI-----QRTK-REYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTA  345 (390)
Q Consensus       272 ~~~~~~~i~~t~~~~~-----~r~~-~~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~  345 (390)
                      .+.++.++++||+++.     .+.+ ......+|+...+..|+...........++.++..+++.+.||+  |+||.+++
T Consensus       156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~--~~~l~~l~  233 (297)
T 3b9p_A          156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYS--GSDLTALA  233 (297)
T ss_dssp             ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCC--HHHHHHHH
T ss_pred             CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC--HHHHHHHH
Confidence            1123445666666543     2211 11112245556666664222111122234456778999999999  99999999


Q ss_pred             HHHHHHHHHcc------------ccccChhhhhhhHHHH
Q psy11689        346 NKPRIQRTKRE------------YREQTADTANKPRIQR  372 (390)
Q Consensus       346 ~~A~~~a~~r~------------~~~i~~~~~~~~~~~~  372 (390)
                      +.|+..+.++.            ...|+++||..++-..
T Consensus       234 ~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~  272 (297)
T 3b9p_A          234 KDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI  272 (297)
T ss_dssp             HHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence            99999998764            2478999998886543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.9e-24  Score=211.74  Aligned_cols=245  Identities=21%  Similarity=0.305  Sum_probs=175.5

Q ss_pred             HhhhcccccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689        121 VQRIGEGREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      +.+.+....+...|+         +++|.+.+++.+.+.+.+++.+++.|.... .++.++||+||||||||+||+++|.
T Consensus        70 i~~~i~~~~~~~~~~---------~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A           70 IMNEIMDHGPPVNWE---------DIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             HHHHTBCCSCCCCGG---------GSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             HHhhcccCCCCCCHH---------HhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHH
Confidence            344455556677788         999999999999999999888888887654 6788999999999999999999999


Q ss_pred             hhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH----------HHHHHHhhcCCCcEE
Q psy11689        201 HSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR----------EQTADNAKKPRIPRT  270 (390)
Q Consensus       201 ~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~----------~~~~~~~~~~~~~~i  270 (390)
                      +++.+++.++++++...+.+..+..++.+|..+...+|+||||||+|.+...+..          ......+....   .
T Consensus       140 ~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~---~  216 (357)
T 3d8b_A          140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT---T  216 (357)
T ss_dssp             HTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC------
T ss_pred             HcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc---c
Confidence            9999999999999999999999999999999999999999999999998765421          11111111100   0


Q ss_pred             EeccCHHHHHhcCchhHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHH
Q psy11689        271 NGGYREQTADTANKPRIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANT  344 (390)
Q Consensus       271 ~~~~~~~~i~~t~~~~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l  344 (390)
                      ....++.+|++||+++.+...+      .....+++...+..++...........++.++..+++.++||+  |+||..|
T Consensus       217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s--~~dl~~l  294 (357)
T 3d8b_A          217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFS--GADMTQL  294 (357)
T ss_dssp             -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCC--HHHHHHH
T ss_pred             cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCC--HHHHHHH
Confidence            0112334456666654321111      1112244556665554222211122234456788999999999  9999999


Q ss_pred             HHHHHHHHHHc------------cccccChhhhhhhHHHHhcCccccc
Q psy11689        345 ANKPRIQRTKR------------EYREQTADTANKPRIQRIGNLSQRN  380 (390)
Q Consensus       345 ~~~A~~~a~~r------------~~~~i~~~~~~~~~~~~~~~~~~~~  380 (390)
                      |..|+..+.++            ....|+++||.+++-...-+..+++
T Consensus       295 ~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~  342 (357)
T 3d8b_A          295 CREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKD  342 (357)
T ss_dssp             HHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCCHHH
Confidence            99999998774            2357999999999876665555443

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.90  E-value=3.6e-24  Score=217.62  Aligned_cols=219  Identities=24%  Similarity=0.351  Sum_probs=170.1

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ  224 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~  224 (390)
                      +++|.+..++.+.+.+..++.+++.|..++..++.++||+||||||||++|+++|.+++.+++.++++++.+.+.|+.+.
T Consensus       205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~  284 (489)
T 3hu3_A          205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES  284 (489)
T ss_dssp             GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhh------H----HHHHHHhhcCCCcEEEeccCHHHHHhcCchhH-----HH
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEY------R----EQTADNAKKPRIPRTNGGYREQTADTANKPRI-----QR  289 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~------~----~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~-----~r  289 (390)
                      .++.+|..|....|++|||||+|.+...+.      .    ......+....     ...++.++++||+++.     .+
T Consensus       285 ~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----~~~~v~vIaaTn~~~~Ld~al~r  359 (489)
T 3hu3_A          285 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----QRAHVIVMAATNRPNSIDPALRR  359 (489)
T ss_dssp             HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----TTSCEEEEEEESCGGGBCGGGGS
T ss_pred             HHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----cCCceEEEEecCCccccCHHHhC
Confidence            999999999999999999999999886432      1    11222221110     1122344566666643     22


Q ss_pred             hHHH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccc--------
Q psy11689        290 TKRE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYR--------  358 (390)
Q Consensus       290 ~~~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~--------  358 (390)
                      ..++   ....+|+...|..|+..... ......++++..++..+.||+  |+||.+||++|++.|.++...        
T Consensus       360 ~gRf~~~i~i~~P~~~eR~~IL~~~~~-~~~l~~~~~l~~la~~t~g~s--~~dL~~L~~~A~~~a~r~~~~~i~~~~~~  436 (489)
T 3hu3_A          360 FGRFDREVDIGIPDATGRLEILQIHTK-NMKLADDVDLEQVANETHGHV--GADLAALCSEAALQAIRKKMDLIDLEDET  436 (489)
T ss_dssp             TTSSCEEEECCCCCHHHHHHHHHHHTT-TSCBCTTCCHHHHHHTCTTCC--HHHHHHHHHHHHHHHHHTTTTTCCTTCSS
T ss_pred             CCcCceEEEeCCCCHHHHHHHHHHHHh-cCCCcchhhHHHHHHHccCCc--HHHHHHHHHHHHHHHHHhccccccccccc
Confidence            2221   12235566777777533222 222356688999999999999  999999999999999887543        


Q ss_pred             ---------ccChhhhhhhHHH
Q psy11689        359 ---------EQTADTANKPRIQ  371 (390)
Q Consensus       359 ---------~i~~~~~~~~~~~  371 (390)
                               .++++||.++.-+
T Consensus       437 ~~~~~~~~~~vt~edf~~Al~~  458 (489)
T 3hu3_A          437 IDAEVMNSLAVTMDDFRWALSQ  458 (489)
T ss_dssp             CCHHHHHHCCBCHHHHHHHHTS
T ss_pred             cchhhcccCcCCHHHHHHHHHh
Confidence                     4788888887643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.89  E-value=8.5e-25  Score=205.07  Aligned_cols=229  Identities=21%  Similarity=0.340  Sum_probs=165.8

Q ss_pred             CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhH
Q psy11689        143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA  222 (390)
Q Consensus       143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~  222 (390)
                      +++++|.+.+++.+.+.+.. +.+++.|.+++...+.++||+||||||||+|++++|.+++.+++.+++..+...+.+..
T Consensus        10 ~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~   88 (268)
T 2r62_A           10 FKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLG   88 (268)
T ss_dssp             STTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSC
T ss_pred             HHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchH
Confidence            33999999999999998876 78899999999999999999999999999999999999999999999998888887777


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHH------hhcCCCcEEE----eccCHHHHHhcCchhHH----
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADN------AKKPRIPRTN----GGYREQTADTANKPRIQ----  288 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~------~~~~~~~~i~----~~~~~~~i~~t~~~~~~----  288 (390)
                      ...++.+|..+....|+||||||+|.+...+........      .....+..+.    ...++.+++++|.++.+    
T Consensus        89 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l  168 (268)
T 2r62_A           89 ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPAL  168 (268)
T ss_dssp             SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGG
T ss_pred             HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhH
Confidence            777788999999999999999999999876533221100      0000010000    11224456677766432    


Q ss_pred             -HhHHH---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhh
Q psy11689        289 -RTKRE---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADT  364 (390)
Q Consensus       289 -r~~~~---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~  364 (390)
                       +..++   ....+|+...|..++.... ......+++++..+++.+.||+  |+||.+++++|+..|..++...|+.++
T Consensus       169 ~r~~Rf~~~i~i~~p~~~~r~~il~~~~-~~~~~~~~~~~~~la~~~~g~~--g~dl~~l~~~a~~~a~~~~~~~i~~~~  245 (268)
T 2r62_A          169 MRPGRFDRQVLVDKPDFNGRVEILKVHI-KGVKLANDVNLQEVAKLTAGLA--GADLANIINEAALLAGRNNQKEVRQQH  245 (268)
T ss_dssp             GSSSSSCCCCBCCCCCTTTHHHHHHHHT-SSSCCCSSCCTTTTTSSSCSSC--HHHHHHHHHHHHHTTSSSCCCSCCHHH
T ss_pred             cCCCCCCeEEEecCcCHHHHHHHHHHHH-hcCCCCCccCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhccCCcCHHH
Confidence             21111   1122445666666653222 1222346688999999999999  999999999999999888888999999


Q ss_pred             hhhhHHHHhcC
Q psy11689        365 ANKPRIQRIGN  375 (390)
Q Consensus       365 ~~~~~~~~~~~  375 (390)
                      +..++...+..
T Consensus       246 ~~~a~~~~~~~  256 (268)
T 2r62_A          246 LKEAVERGIAG  256 (268)
T ss_dssp             HHTSCTTCCCC
T ss_pred             HHHHHHHHhhc
Confidence            98877554433

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.89  E-value=5.8e-23  Score=191.29  Aligned_cols=225  Identities=22%  Similarity=0.334  Sum_probs=164.0

Q ss_pred             cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .+.+...|+         +++|+++.+.++++.... +..+..+.++++..+.+++|+||||||||+|+++++...+.++
T Consensus         8 ~~~~~~~~~---------~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~   77 (254)
T 1ixz_A            8 TEAPKVTFK---------DVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF   77 (254)
T ss_dssp             CCCCSCCGG---------GCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             cCCCCCCHH---------HhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            345666777         999999999999998876 5677888888888888999999999999999999999998888


Q ss_pred             hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------H----HHHHHhhcCCCcEEEec
Q psy11689        207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------E----QTADNAKKPRIPRTNGG  273 (390)
Q Consensus       207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~----~~~~~~~~~~~~~i~~~  273 (390)
                      +.+++.++...+.+...+.+..+|+.+....|+++++||++.+...+..         .    .....+.....     .
T Consensus        78 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-----~  152 (254)
T 1ixz_A           78 ITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-----D  152 (254)
T ss_dssp             EEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-----T
T ss_pred             EEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-----C
Confidence            8888887777777777788999999998888999999999987654321         1    11111111000     0


Q ss_pred             cCHHHHHhcCchhHHHhHH-----Hh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHH
Q psy11689        274 YREQTADTANKPRIQRTKR-----EY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTA  345 (390)
Q Consensus       274 ~~~~~i~~t~~~~~~r~~~-----~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~  345 (390)
                      .....++++++|+.+.+.+     +.   ....|+...|..|+.... ......+++++..+|..++||+  |+||++++
T Consensus       153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-~~~~~~~~~~~~~la~~~~G~~--~~dl~~~~  229 (254)
T 1ixz_A          153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-RGKPLAEDVDLALLAKRTPGFV--GADLENLL  229 (254)
T ss_dssp             CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH-TTSCBCTTCCHHHHHHTCTTCC--HHHHHHHH
T ss_pred             CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH-cCCCCCcccCHHHHHHHcCCCC--HHHHHHHH
Confidence            1112344556655532222     11   112455666766653222 1223356788999999999999  99999999


Q ss_pred             HHHHHHHHHccccccChhhhhhhH
Q psy11689        346 NKPRIQRTKREYREQTADTANKPR  369 (390)
Q Consensus       346 ~~A~~~a~~r~~~~i~~~~~~~~~  369 (390)
                      ++|+..|..++...||++|+.++.
T Consensus       230 ~~a~~~a~~~~~~~I~~~dl~~a~  253 (254)
T 1ixz_A          230 NEAALLAAREGRRKITMKDLEEAA  253 (254)
T ss_dssp             HHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCcCHHHHHHHh
Confidence            999999998888899999998764

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.88  E-value=2.4e-23  Score=206.09  Aligned_cols=236  Identities=20%  Similarity=0.271  Sum_probs=159.7

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccc
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQ  213 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~  213 (390)
                      |...+....+++|+|.+.+++.+.+.+..+..+++.|..++ .++.++||+||||||||+||+++|.+++.+++.+++.+
T Consensus       105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~  183 (389)
T 3vfd_A          105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS  183 (389)
T ss_dssp             TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred             hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence            33344455555999999999999999999888888887665 45789999999999999999999999999999999999


Q ss_pred             ccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH------HHHHHhhcC--CCcEEEeccCHHHHHhcCch
Q psy11689        214 LYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYRE------QTADNAKKP--RIPRTNGGYREQTADTANKP  285 (390)
Q Consensus       214 ~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~------~~~~~~~~~--~~~~i~~~~~~~~i~~t~~~  285 (390)
                      +...+.|..+..++.+|..+...+|+||||||+|.++..+...      .....+...  +.. .....++.+|++||++
T Consensus       184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~v~vI~atn~~  262 (389)
T 3vfd_A          184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ-SAGDDRVLVMGATNRP  262 (389)
T ss_dssp             C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------CEEEEEEESCG
T ss_pred             hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc-ccCCCCEEEEEecCCc
Confidence            9999999999999999999999999999999999997654321      111111000  000 0001223345566654


Q ss_pred             hHHHhHH------HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc----
Q psy11689        286 RIQRTKR------EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR----  355 (390)
Q Consensus       286 ~~~r~~~------~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r----  355 (390)
                      +.+...+      .....+++...+..|+............+.++..+++.++||+  ++||..|+..|+..+.++    
T Consensus       263 ~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~--~~~l~~L~~~a~~~~~rel~~~  340 (389)
T 3vfd_A          263 QELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYS--GSDLTALAKDAALGPIRELKPE  340 (389)
T ss_dssp             GGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCC--HHHHHHHHHHHTTHHHHTSCCC
T ss_pred             hhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhhhhh
Confidence            4321111      1122245566666665332222222234456778999999999  999999999999999877    


Q ss_pred             --------cccccChhhhhhhHHHHh
Q psy11689        356 --------EYREQTADTANKPRIQRI  373 (390)
Q Consensus       356 --------~~~~i~~~~~~~~~~~~~  373 (390)
                              ....|+.+||.+++-...
T Consensus       341 ~~~~~~~~~~~~i~~~d~~~al~~~~  366 (389)
T 3vfd_A          341 QVKNMSASEMRNIRLSDFTESLKKIK  366 (389)
T ss_dssp             ---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred             hhhccchhhcCCcCHHHHHHHHHHcC
Confidence                    345789999988875433

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.87  E-value=1e-21  Score=185.52  Aligned_cols=224  Identities=23%  Similarity=0.353  Sum_probs=161.9

Q ss_pred             CccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        130 ERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       130 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      +.+.|+         +++|.++++++++..... +..+..+.++++..+.+++|+||||||||||+++++...+.+++.+
T Consensus        35 ~~~~~~---------~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~  104 (278)
T 1iy2_A           35 PKVTFK---------DVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA  104 (278)
T ss_dssp             CCCCGG---------GSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCHH---------HhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence            556666         999999999999998876 5667788888888888899999999999999999999998888888


Q ss_pred             ccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHh-hcC-CCcEEEeccCHHH
Q psy11689        210 SAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNA-KKP-RIPRTNGGYREQT  278 (390)
Q Consensus       210 ~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~-~~~-~~~~i~~~~~~~~  278 (390)
                      ++.++...+.+...+.+..+|+.+....|+++++||++.+...+..         ......+ ... +.   ........
T Consensus       105 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg---~~~~~~i~  181 (278)
T 1iy2_A          105 SGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF---EKDTAIVV  181 (278)
T ss_dssp             EHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC---CTTCCEEE
T ss_pred             cHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC---CCCCCEEE
Confidence            8877776677777788899999998889999999999876543211         1111111 100 00   00011223


Q ss_pred             HHhcCchhHHHhHH-----Hh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689        279 ADTANKPRIQRTKR-----EY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI  350 (390)
Q Consensus       279 i~~t~~~~~~r~~~-----~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~  350 (390)
                      ++++++|+++.+.+     +.   ...+|+...|..|+.... ......+++++..+|..++||+  |+||++++++|+.
T Consensus       182 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-~~~~~~~~~~~~~la~~~~G~~--~~dl~~l~~~a~~  258 (278)
T 1iy2_A          182 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA-RGKPLAEDVDLALLAKRTPGFV--GADLENLLNEAAL  258 (278)
T ss_dssp             EEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH-TTSCBCTTCCHHHHHHTCTTCC--HHHHHHHHHHHHH
T ss_pred             EEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH-ccCCCCcccCHHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence            45566655533222     11   112445666766653222 1223356788999999999999  9999999999999


Q ss_pred             HHHHccccccChhhhhhhH
Q psy11689        351 QRTKREYREQTADTANKPR  369 (390)
Q Consensus       351 ~a~~r~~~~i~~~~~~~~~  369 (390)
                      .|..++...|+++|+.++.
T Consensus       259 ~a~~~~~~~I~~~dl~~a~  277 (278)
T 1iy2_A          259 LAAREGRRKITMKDLEEAA  277 (278)
T ss_dssp             HHHHTTCCSBCHHHHHHHT
T ss_pred             HHHHhCCCCcCHHHHHHHh
Confidence            9998888899999998763

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.72  E-value=6.3e-19  Score=167.89  Aligned_cols=163  Identities=15%  Similarity=0.107  Sum_probs=110.7

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHH----HhcCCeEEEEcCCCCC
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRA----RLAAPAILFIDEIERT  249 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A----~~~~p~il~lDEid~~  249 (390)
                      +.++|.++||+||||||||+|++++|++++.+++.++++++...+.|..+..++.+|..|    +..+|+||||||+|.+
T Consensus        32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~  111 (293)
T 3t15_A           32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG  111 (293)
T ss_dssp             TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence            567789999999999999999999999999999999999999999999999999999998    5779999999999998


Q ss_pred             CChhhHH------------HHHHHhhcCCCc------EEEeccCHHHHHhcCchh-----HHHhHHHh-hhhcCCchhHH
Q psy11689        250 YNCEYRE------------QTADNAKKPRIP------RTNGGYREQTADTANKPR-----IQRTKREY-REQTADTAHKT  305 (390)
Q Consensus       250 l~~r~~~------------~~~~~~~~~~~~------~i~~~~~~~~i~~t~~~~-----~~r~~~~~-l~~l~~~~~r~  305 (390)
                      .+.+...            .....+......      ......++.+|+|||+++     +.|+.++. ...+|+...|.
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~  191 (293)
T 3t15_A          112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI  191 (293)
T ss_dssp             ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEECCCHHHHH
T ss_pred             cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeCcCHHHHH
Confidence            8744311            111111111100      112334567788888764     34433322 12367777887


Q ss_pred             HhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHH
Q psy11689        306 RISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNAN  343 (390)
Q Consensus       306 ~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~  343 (390)
                      .|+.....     ..++++..+++.++||+  |+||..
T Consensus       192 ~Il~~~~~-----~~~~~~~~l~~~~~~~~--~~~l~~  222 (293)
T 3t15_A          192 GVCTGIFR-----TDNVPAEDVVKIVDNFP--GQSIDF  222 (293)
T ss_dssp             HHHHHHHG-----GGCCCHHHHHHHHHHSC--SCCHHH
T ss_pred             HHHHHhcc-----CCCCCHHHHHHHhCCCC--cccHHH
Confidence            77532211     23578899999999999  999864

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.64  E-value=8.8e-18  Score=169.57  Aligned_cols=103  Identities=24%  Similarity=0.349  Sum_probs=89.2

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc--cchhccccccccCcchhhH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV--YRVLAASAAQLYSPYVGEA  222 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~--~~~~~i~~~~~~~~~~g~~  222 (390)
                      +++|.+.+++.+..++...        ..+..++.++||+||||||||++|+++|.+++  .+++.++++++...+.++.
T Consensus        38 ~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~  109 (456)
T 2c9o_A           38 GLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKT  109 (456)
T ss_dssp             TEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHH
T ss_pred             hccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhh
Confidence            9999999999998877542        12445778999999999999999999999999  8999999999999999998


Q ss_pred             HHHHHHHHHHH---HhcCCeEEEEcCCCCCCChhhHH
Q psy11689        223 EQNVTQLFHRA---RLAAPAILFIDEIERTYNCEYRE  256 (390)
Q Consensus       223 ~~~i~~~f~~A---~~~~p~il~lDEid~~l~~r~~~  256 (390)
                      +. ++.+|..|   +..+|+|||+||+|+++..+...
T Consensus       110 ~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~  145 (456)
T 2c9o_A          110 EV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETEN  145 (456)
T ss_dssp             HH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC----
T ss_pred             HH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCC
Confidence            87 89999999   88899999999999999877554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.56  E-value=8.2e-15  Score=139.54  Aligned_cols=104  Identities=25%  Similarity=0.398  Sum_probs=85.9

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCC---CCceEEEEcCCCChHHHHHHHHHHhhcc-------chhccccccc
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIP---KPKGILLYGPPGCAKTSLVRTLAAHSVY-------RVLAASAAQL  214 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~vLl~GppGtGKT~La~aia~~~~~-------~~~~i~~~~~  214 (390)
                      +++|++.+++.+.+.+..+. .+..++..++.   ++.++||+||||||||++++++|..++.       +++.+++.++
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l  110 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL  110 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred             HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence            69999999999999988743 35555555443   3457999999999999999999988753       7888899999


Q ss_pred             cCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        215 YSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       215 ~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      ...+.|.....+..+|..+   .++||||||++.+...
T Consensus       111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~  145 (309)
T 3syl_A          111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRP  145 (309)
T ss_dssp             CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCC
T ss_pred             hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccC
Confidence            9999998888888888876   5789999999998743

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.48  E-value=5.9e-14  Score=136.88  Aligned_cols=215  Identities=14%  Similarity=0.099  Sum_probs=125.5

Q ss_pred             CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc--chhccccccccCcch-
Q psy11689        143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAASAAQLYSPYV-  219 (390)
Q Consensus       143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~~~~~~~~~~-  219 (390)
                      ++++.|.+..++.+..+....       . .+..++.++||+||||||||++++++|..++.  +++.+.+..+...+. 
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~-------~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~  114 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMI-------R-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMS  114 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHH-------H-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSC
T ss_pred             hhhccChHHHHHHHHHHHHHH-------H-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccc
Confidence            349999999988876655431       1 12345689999999999999999999999874  555555544332221 


Q ss_pred             ------------------------------------------------hhHHHHHHHHHHHHHh---------cCCeEEE
Q psy11689        220 ------------------------------------------------GEAEQNVTQLFHRARL---------AAPAILF  242 (390)
Q Consensus       220 ------------------------------------------------g~~~~~i~~~f~~A~~---------~~p~il~  242 (390)
                                                                      +.....++..|..+..         ..|+|||
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~  194 (368)
T 3uk6_A          115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF  194 (368)
T ss_dssp             HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEE
T ss_pred             hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEE
Confidence                                                            1212344445544432         1278999


Q ss_pred             EcCCCCCCChhhHHHHHHHhhcCCCcEE-Eecc-CHHHHHhc--Cc-----hhHHHhHHHhhhhcC--CchhHHHhhccc
Q psy11689        243 IDEIERTYNCEYREQTADNAKKPRIPRT-NGGY-REQTADTA--NK-----PRIQRTKREYREQTA--DTAHKTRISRTN  311 (390)
Q Consensus       243 lDEid~~l~~r~~~~~~~~~~~~~~~~i-~~~~-~~~~i~~t--~~-----~~~~r~~~~~l~~l~--~~~~r~~I~~~n  311 (390)
                      |||++.+. ....+.....+.......+ ..+. ....+.++  +.     +.+.+.+..  ..++  +..++..++...
T Consensus       195 IDEi~~l~-~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~--i~~~~~~~~e~~~il~~~  271 (368)
T 3uk6_A          195 IDEVHMLD-IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI--VSTTPYSEKDTKQILRIR  271 (368)
T ss_dssp             EESGGGSB-HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE--EEECCCCHHHHHHHHHHH
T ss_pred             EhhccccC-hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE--EEecCCCHHHHHHHHHHH
Confidence            99999874 3333333344433332222 2222 22222222  11     222221111  1222  344444443221


Q ss_pred             ccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHH
Q psy11689        312 RGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRI  370 (390)
Q Consensus       312 ~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~  370 (390)
                      ........++..+..+++.+.+.+  .+++.+++..|...|..++...|+.+++.++.-
T Consensus       272 ~~~~~~~~~~~~l~~l~~~~~~G~--~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~  328 (368)
T 3uk6_A          272 CEEEDVEMSEDAYTVLTRIGLETS--LRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS  328 (368)
T ss_dssp             HHHTTCCBCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             HHHcCCCCCHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            111122223334567788887667  999999999999999999999999999998864

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.46  E-value=1.7e-14  Score=135.25  Aligned_cols=199  Identities=12%  Similarity=0.103  Sum_probs=110.3

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc-hhhHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY-VGEAE  223 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~-~g~~~  223 (390)
                      .+.|.....+.+......   ....+...+..++.++||+||||||||++|+++|...+.+++.+++++.+... .+...
T Consensus        34 ~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~  110 (272)
T 1d2n_A           34 GIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC  110 (272)
T ss_dssp             CCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred             CCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence            455555544444432111   12233334456788999999999999999999999999999988877644332 23334


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChh-----hHHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhH--H---H
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCE-----YREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTK--R---E  293 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r-----~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~--~---~  293 (390)
                      ..++.+|..+...++++|||||++.+++.+     ........+....-.......++.+++++|.++.+..+  .   .
T Consensus       111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~  190 (272)
T 1d2n_A          111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFS  190 (272)
T ss_dssp             HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSS
T ss_pred             HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccc
Confidence            677889999988899999999999986432     12222222211100000011223346667766554331  1   1


Q ss_pred             hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCC--cHHHHHHHHHH
Q psy11689        294 YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREY--SAQNANTANKP  348 (390)
Q Consensus       294 ~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~--gaDL~~l~~~A  348 (390)
                      ....+|....+..|......  ....++.++..+++.+.||+..  ..++.+++..|
T Consensus       191 ~~i~~p~l~~r~~i~~i~~~--~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a  245 (272)
T 1d2n_A          191 TTIHVPNIATGEQLLEALEL--LGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS  245 (272)
T ss_dssp             EEEECCCEEEHHHHHHHHHH--HTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred             eEEcCCCccHHHHHHHHHHh--cCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence            11124444443333211111  1112334567788888888311  33444444444

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.42  E-value=4.1e-13  Score=129.49  Aligned_cols=219  Identities=16%  Similarity=0.129  Sum_probs=129.1

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccc
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA  212 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~  212 (390)
                      .|...+....++++.|.+..++.+...+.....        .-.+..++||+||||||||++|+++|...+.+++.++++
T Consensus        18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~   89 (338)
T 3pfi_A           18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAP   89 (338)
T ss_dssp             -----CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence            466666666777999999999999888865311        113566799999999999999999999999999888876


Q ss_pred             cccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEec-----------cCHHHHHh
Q psy11689        213 QLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGG-----------YREQTADT  281 (390)
Q Consensus       213 ~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~-----------~~~~~i~~  281 (390)
                      ...      ....+...+..  ...+++|||||++.+. ..........+.......+...           .++.++++
T Consensus        90 ~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~-~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  160 (338)
T 3pfi_A           90 MIE------KSGDLAAILTN--LSEGDILFIDEIHRLS-PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGA  160 (338)
T ss_dssp             GCC------SHHHHHHHHHT--CCTTCEEEEETGGGCC-HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEE
T ss_pred             hcc------chhHHHHHHHh--ccCCCEEEEechhhcC-HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEe
Confidence            542      12223333332  4578999999999875 3333333344433332221111           01334556


Q ss_pred             cCchhHHHh-HHHh---hhhcC--CchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc
Q psy11689        282 ANKPRIQRT-KREY---REQTA--DTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR  355 (390)
Q Consensus       282 t~~~~~~r~-~~~~---l~~l~--~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r  355 (390)
                      ||+.....+ ++..   ...++  +..++..++...........++..+..+++.++|.   ...+.+++..+...+...
T Consensus       161 tn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~---~r~l~~~l~~~~~~a~~~  237 (338)
T 3pfi_A          161 TTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRST---PRIALRLLKRVRDFADVN  237 (338)
T ss_dssp             ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC---HHHHHHHHHHHHHHHHHT
T ss_pred             CCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC---HHHHHHHHHHHHHHHHhh
Confidence            665433211 1111   11122  23444444321111111112222345677766665   688999999999888877


Q ss_pred             cccccChhhhhhhHHH
Q psy11689        356 EYREQTADTANKPRIQ  371 (390)
Q Consensus       356 ~~~~i~~~~~~~~~~~  371 (390)
                      +...++.+++..+.-.
T Consensus       238 ~~~~i~~~~~~~~~~~  253 (338)
T 3pfi_A          238 DEEIITEKRANEALNS  253 (338)
T ss_dssp             TCSEECHHHHHHHHHH
T ss_pred             cCCccCHHHHHHHHHH
Confidence            7788999988776644

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.39  E-value=3e-14  Score=140.02  Aligned_cols=85  Identities=20%  Similarity=0.300  Sum_probs=75.1

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE   77 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~   77 (390)
                      |.+.-.++|+|+|+|||++.+|+||+|              ||||+ .|++|. +.++|++||++    +++.+++|+ +
T Consensus       280 Dg~~~~~~V~vIaATNrpd~LDpAllR--------------pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl-~  344 (405)
T 4b4t_J          280 DGFETSKNIKIIMATNRLDILDPALLR--------------PGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL-R  344 (405)
T ss_dssp             HTTTCCCCEEEEEEESCSSSSCHHHHS--------------TTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH-H
T ss_pred             hccCCCCCeEEEeccCChhhCCHhHcC--------------CCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH-H
Confidence            555667899999999999999999999              99999 777666 47789999987    567889999 9


Q ss_pred             HHHHhhcCCccccccccccccchhhh
Q psy11689         78 NVQREEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        78 ~la~~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .||+.|+||+|+||..+|.+|++.+.
T Consensus       345 ~lA~~t~G~SGADi~~l~~eA~~~Ai  370 (405)
T 4b4t_J          345 KVAEKMNGCSGADVKGVCTEAGMYAL  370 (405)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.36  E-value=2.9e-12  Score=128.57  Aligned_cols=190  Identities=13%  Similarity=0.083  Sum_probs=111.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      +.+++|+||||+|||+|++++++..     +.+++++++.++...+.+.........|.......|+||||||++.+.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~  209 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK  209 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence            5789999999999999999999887     66677777766544333322221122444444447999999999999875


Q ss_pred             h-hHHHHHHHh---hcCCCcEEEeccCH-HHHHhcCchhHHHhHH---HhhhhcCCchhHHHhhcccccccCCCCCCCCc
Q psy11689        253 E-YREQTADNA---KKPRIPRTNGGYRE-QTADTANKPRIQRTKR---EYREQTADTAHKTRISRTNRGYREKTADTANK  324 (390)
Q Consensus       253 r-~~~~~~~~~---~~~~~~~i~~~~~~-~~i~~t~~~~~~r~~~---~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl  324 (390)
                      + ........+   ...+...+..+++. ..+.. -.+++...+.   ......++...+..|+...........++-.+
T Consensus       210 ~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~-l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l  288 (440)
T 2z4s_A          210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSE-FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVL  288 (440)
T ss_dssp             HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS-CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHH
T ss_pred             hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH-HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            3 223232222   33344455555442 11111 1223322111   11112334455555542221111222233336


Q ss_pred             chhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHH
Q psy11689        325 PRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQR  372 (390)
Q Consensus       325 ~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~  372 (390)
                      ..|+..+.| +  .+++.+++.++...|...+. .||.+++.++.-..
T Consensus       289 ~~la~~~~g-n--~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~  332 (440)
T 2z4s_A          289 NFVAENVDD-N--LRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF  332 (440)
T ss_dssp             HHHHHHCCS-C--HHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred             HHHHHhcCC-C--HHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence            778888876 5  89999999999988876653 69998887776443

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.34  E-value=5.3e-14  Score=138.85  Aligned_cols=85  Identities=21%  Similarity=0.243  Sum_probs=73.6

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE   77 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~   77 (390)
                      |...-.++|+|||+|||++.+|+||+|              ||||+ .|++|. +.++|++||++    +++++++|+ +
T Consensus       314 Dg~~~~~~ViVIaATNrpd~LDpALlR--------------pGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl-~  378 (437)
T 4b4t_I          314 DGFDDRGDVKVIMATNKIETLDPALIR--------------PGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL-E  378 (437)
T ss_dssp             HHCCCSSSEEEEEEESCSTTCCTTSSC--------------TTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH-H
T ss_pred             hCcCCCCCEEEEEeCCChhhcCHHHhc--------------CCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH-H
Confidence            445556789999999999999988888              99999 666666 47899999987    568889999 9


Q ss_pred             HHHHhhcCCccccccccccccchhhh
Q psy11689         78 NVQREEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        78 ~la~~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .||+.|+||+|+||..+|.+|++.+.
T Consensus       379 ~LA~~T~GfSGADI~~l~~eA~~~Ai  404 (437)
T 4b4t_I          379 TLVTTKDDLSGADIQAMCTEAGLLAL  404 (437)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.33  E-value=3e-13  Score=139.24  Aligned_cols=225  Identities=19%  Similarity=0.131  Sum_probs=118.8

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC--------
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS--------  216 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~--------  216 (390)
                      ++.|++++++.+.+.+.....      +..+ ++..++|+||||||||+|++++|..++.++..+++.....        
T Consensus        82 di~G~~~vk~~i~~~~~l~~~------~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~  154 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKL------TKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR  154 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHH------SSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------
T ss_pred             HhccHHHHHHHHHHHHHHHHh------cccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHH
Confidence            789999999998776643211      1122 6788999999999999999999999998888777655332        


Q ss_pred             -cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEE--------eccCHHHHHhcC
Q psy11689        217 -PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTN--------GGYREQTADTAN  283 (390)
Q Consensus       217 -~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~--------~~~~~~~i~~t~  283 (390)
                       .+.|...+.+...|..+....| |+||||++.+...+... ....+...    ......        ...+..+++|+|
T Consensus       155 ~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~-~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN  232 (543)
T 3m6a_A          155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGD-PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN  232 (543)
T ss_dssp             ---------CHHHHHHTTCSSSE-EEEEEESSSCC----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS
T ss_pred             HHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccC-HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC
Confidence             4556666677778888877776 99999999988654321 11111110    111100        002334566777


Q ss_pred             chhHHH-hHHHhh--hhcC--CchhHHHhhcccccc-----cCCCCCC--CCcchhhhcCCCCCCC--c----HHHHHHH
Q psy11689        284 KPRIQR-TKREYR--EQTA--DTAHKTRISRTNRGY-----REKTADT--ANKPRIPRTNRGYREY--S----AQNANTA  345 (390)
Q Consensus       284 ~~~~~r-~~~~~l--~~l~--~~~~r~~I~~~n~~~-----r~~~~~~--vdl~~la~~t~gfs~~--g----aDL~~l~  345 (390)
                      +++... +++..+  ..++  +..++..|+......     .......  ++-+.+.....+|+..  .    ..|+.+|
T Consensus       233 ~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~  312 (543)
T 3m6a_A          233 NLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAIC  312 (543)
T ss_dssp             STTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHH
T ss_pred             ccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHH
Confidence            654321 111111  1222  344454444221100     0010111  1222232222233300  2    5566666


Q ss_pred             HHHHHHHHHc--cccccChhhhhhhHHHHhcCccc
Q psy11689        346 NKPRIQRTKR--EYREQTADTANKPRIQRIGNLSQ  378 (390)
Q Consensus       346 ~~A~~~a~~r--~~~~i~~~~~~~~~~~~~~~~~~  378 (390)
                      ..|+..+...  +...|+.+++.+..-...+..++
T Consensus       313 ~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~~~e~  347 (543)
T 3m6a_A          313 RKAAKAIVAEERKRITVTEKNLQDFIGKRIFRYGQ  347 (543)
T ss_dssp             HHHHHHHHTTCCSCCEECTTTTHHHHCSCCSCCST
T ss_pred             HHHHHHHHhcCCcceecCHHHHHHHhCCcccCchh
Confidence            6666666554  33478999999887665555544

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.1e-13  Score=137.70  Aligned_cols=85  Identities=19%  Similarity=0.241  Sum_probs=73.8

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE   77 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~   77 (390)
                      |...-.++|+|||+|||++.+|+||+|              ||||+ .|++|. +.++|++||++    +.+++++++ +
T Consensus       341 Dg~~~~~~ViVIaATNrpd~LDpALlR--------------pGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl-~  405 (467)
T 4b4t_H          341 DGFDPRGNIKVMFATNRPNTLDPALLR--------------PGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW-E  405 (467)
T ss_dssp             HSSCCTTTEEEEEECSCTTSBCHHHHS--------------TTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH-H
T ss_pred             hccCCCCcEEEEeCCCCcccCChhhhc--------------cccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH-H
Confidence            344456789999999999999999999              99999 666666 47889999987    567889999 9


Q ss_pred             HHHHhhcCCccccccccccccchhhh
Q psy11689         78 NVQREEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        78 ~la~~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .||+.|+||+|+||..+|.+|++.+.
T Consensus       406 ~LA~~T~GfSGADI~~l~~eAa~~Ai  431 (467)
T 4b4t_H          406 LISRLCPNSTGAELRSVCTEAGMFAI  431 (467)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998754

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.32  E-value=6.8e-13  Score=135.81  Aligned_cols=123  Identities=19%  Similarity=0.252  Sum_probs=86.6

Q ss_pred             CccccccccCCCCCCCccChHHHHHHHHHHHhccccC-HHHhhhcCCC---CCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689        130 ERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKY-AREFERLAIP---KPKGILLYGPPGCAKTSLVRTLAAHSVYR  205 (390)
Q Consensus       130 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~-~~~~~~~~~~---~~~~vLl~GppGtGKT~La~aia~~~~~~  205 (390)
                      ....|.+++....++++.|.+..++.+.+.+...... +..++..+..   ++..+||+||||||||++|+++|.+++++
T Consensus        25 ~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~  104 (516)
T 1sxj_A           25 SDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD  104 (516)
T ss_dssp             -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred             cCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            3456888888888889999999999999988652221 2233333332   56789999999999999999999999999


Q ss_pred             hhccccccccCcchhhHH-------HHHHHHHHHH-----HhcCCeEEEEcCCCCCCCh
Q psy11689        206 VLAASAAQLYSPYVGEAE-------QNVTQLFHRA-----RLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       206 ~~~i~~~~~~~~~~g~~~-------~~i~~~f~~A-----~~~~p~il~lDEid~~l~~  252 (390)
                      ++.+++++..........       ..+...|..+     ....+.||||||+|.+...
T Consensus       105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~  163 (516)
T 1sxj_A          105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG  163 (516)
T ss_dssp             EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT
T ss_pred             EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh
Confidence            999988776543321110       0012233333     2356899999999998764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.29  E-value=2.6e-13  Score=134.97  Aligned_cols=86  Identities=21%  Similarity=0.281  Sum_probs=75.0

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC--CCccCcccccc----ccCCcccchH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT--APQGRETELPF----TKLNEEVELS   76 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~--~~~~r~~~l~~----~~~~~~v~l~   76 (390)
                      |++.-..||+|||+|||++.+|+||+|              ||||+ .|++|.  +.++|++|+.+    +.+.+++|+ 
T Consensus       304 dg~~~~~~v~vI~aTN~~~~LD~AllR--------------pGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl-  368 (428)
T 4b4t_K          304 DGFDQSTNVKVIMATNRADTLDPALLR--------------PGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL-  368 (428)
T ss_dssp             HHSCSSCSEEEEEEESCSSSCCHHHHS--------------SSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH-
T ss_pred             hCCCCCCCEEEEEecCChhhcChhhhc--------------CCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH-
Confidence            455556789999999999999999999              99999 888873  35788889887    668889999 


Q ss_pred             HHHHHhhcCCccccccccccccchhhhc
Q psy11689         77 ENVQREEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        77 ~~la~~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      +.||+.|.||+|+||..+|.+|++.+..
T Consensus       369 ~~lA~~t~G~sgadi~~l~~eA~~~a~r  396 (428)
T 4b4t_K          369 DSLIIRNDSLSGAVIAAIMQEAGLRAVR  396 (428)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987544

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.29  E-value=1.5e-13  Score=136.77  Aligned_cols=85  Identities=20%  Similarity=0.277  Sum_probs=73.6

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE   77 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~   77 (390)
                      |...-.++|+|+|+|||++.+|+||+|              ||||+ .|++|. +.++|++||++    +++++++|+ +
T Consensus       313 dg~~~~~~ViVIaaTNrp~~LD~AllR--------------pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl-~  377 (434)
T 4b4t_M          313 DGFSSDDRVKVLAATNRVDVLDPALLR--------------SGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW-Q  377 (434)
T ss_dssp             TTSCSSCSSEEEEECSSCCCCCTTTCS--------------TTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH-H
T ss_pred             hccCCCCCEEEEEeCCCchhcCHhHhc--------------CCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH-H
Confidence            444556789999999999999988888              99999 666666 47789999987    668899999 9


Q ss_pred             HHHHhhcCCccccccccccccchhhh
Q psy11689         78 NVQREEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        78 ~la~~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .||+.|.||+|+||..+|.+|++.+.
T Consensus       378 ~lA~~t~G~sGADi~~l~~eA~~~a~  403 (434)
T 4b4t_M          378 ELARSTDEFNGAQLKAVTVEAGMIAL  403 (434)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.28  E-value=2.1e-13  Score=135.90  Aligned_cols=85  Identities=21%  Similarity=0.300  Sum_probs=73.2

Q ss_pred             chhhhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHH
Q psy11689          4 DLVRVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSE   77 (390)
Q Consensus         4 ~~~~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~   77 (390)
                      |+..-.++|+|||+|||++.+|+||+|              ||||+ .|++|. +.++|.+||++    +++.+++|+ +
T Consensus       313 Dg~~~~~~vivI~ATNrp~~LDpAllR--------------pGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl-~  377 (437)
T 4b4t_L          313 DGFDNLGQTKIIMATNRPDTLDPALLR--------------PGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF-E  377 (437)
T ss_dssp             HSSSCTTSSEEEEEESSTTSSCTTTTS--------------TTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH-H
T ss_pred             hcccCCCCeEEEEecCCchhhCHHHhC--------------CCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH-H
Confidence            344456789999999999999999988              99999 666666 47789999987    567889999 9


Q ss_pred             HHHHhhcCCccccccccccccchhhh
Q psy11689         78 NVQREEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        78 ~la~~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .||+.|.||+|+||..+|.+|++.+.
T Consensus       378 ~lA~~t~G~sGADi~~l~~eA~~~ai  403 (437)
T 4b4t_L          378 AAVKMSDGFNGADIRNCATEAGFFAI  403 (437)
T ss_dssp             HHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.26  E-value=3.6e-11  Score=109.22  Aligned_cols=179  Identities=12%  Similarity=0.045  Sum_probs=97.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      .+..++|+||||||||+++++++.+..   .+++.+++.++.......        +.  ....|.+|||||++.+....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~~~  120 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTAL--------LE--GLEQFDLICIDDVDAVAGHP  120 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGG--------GT--TGGGSSEEEEETGGGGTTCH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--------HH--hccCCCEEEEeccccccCCH
Confidence            568899999999999999999998775   556666666554432111        11  12567899999999987644


Q ss_pred             h-HHHHHHHh---hcCCCc-EEEeccCHHHHHhcCchhHHHhH---HHhhhhcCCchhHHHhhcccccccCCCCCCCCcc
Q psy11689        254 Y-REQTADNA---KKPRIP-RTNGGYREQTADTANKPRIQRTK---REYREQTADTAHKTRISRTNRGYREKTADTANKP  325 (390)
Q Consensus       254 ~-~~~~~~~~---~~~~~~-~i~~~~~~~~i~~t~~~~~~r~~---~~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~  325 (390)
                      . .......+   ...... .+..++....-.....+++...+   ....-..++..++..++...........++..+.
T Consensus       121 ~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  200 (242)
T 3bos_A          121 LWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGR  200 (242)
T ss_dssp             HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            2 22222221   111222 33333221100001112332222   1111112334455544422111111122222345


Q ss_pred             hhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhH
Q psy11689        326 RIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPR  369 (390)
Q Consensus       326 ~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~  369 (390)
                      .+++.+.| +  ..++.+++..+...|...+ ..||.+++.+++
T Consensus       201 ~l~~~~~g-~--~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l  240 (242)
T 3bos_A          201 FLLNRMAR-D--LRTLFDVLDRLDKASMVHQ-RKLTIPFVKEML  240 (242)
T ss_dssp             HHHHHTTT-C--HHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHH
T ss_pred             HHHHHccC-C--HHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHh
Confidence            67777766 5  7899999999988875444 579999987764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.25  E-value=6.5e-12  Score=119.01  Aligned_cols=109  Identities=25%  Similarity=0.380  Sum_probs=78.0

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC-cchhhH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERL-AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS-PYVGEA  222 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~-~~~g~~  222 (390)
                      ++.|.+.+++.+...+..+.........+ .-..+.++||+||||||||++++++|..++.+++.+++..+.. .+.+..
T Consensus        16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~   95 (310)
T 1ofh_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE   95 (310)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred             hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence            68999999999988876532222111100 0135678999999999999999999999999999999888765 555543


Q ss_pred             -HHHHHHHHHHH-----HhcCCeEEEEcCCCCCCChh
Q psy11689        223 -EQNVTQLFHRA-----RLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       223 -~~~i~~~f~~A-----~~~~p~il~lDEid~~l~~r  253 (390)
                       ...++.+|..+     ....++||||||++.+....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~  132 (310)
T 1ofh_A           96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG  132 (310)
T ss_dssp             TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCS
T ss_pred             HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccc
Confidence             24455655532     12347899999999987653

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.24  E-value=3.2e-11  Score=105.11  Aligned_cols=100  Identities=25%  Similarity=0.315  Sum_probs=74.9

Q ss_pred             CCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhcc
Q psy11689        140 GAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAA  209 (390)
Q Consensus       140 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~i  209 (390)
                      ...++++.|.++..+.+.+.+..             ..+.+++|+||||||||+++++++...          +.+++.+
T Consensus        18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~   84 (195)
T 1jbk_A           18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL   84 (195)
T ss_dssp             TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred             hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence            34455889988888887776532             346789999999999999999999886          5666777


Q ss_pred             cccccc--CcchhhHHHHHHHHHHHHH-hcCCeEEEEcCCCCCCCh
Q psy11689        210 SAAQLY--SPYVGEAEQNVTQLFHRAR-LAAPAILFIDEIERTYNC  252 (390)
Q Consensus       210 ~~~~~~--~~~~g~~~~~i~~~f~~A~-~~~p~il~lDEid~~l~~  252 (390)
                      ++..+.  ..+.+.....+..++..+. ...|.||+|||++.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~  130 (195)
T 1jbk_A           85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGA  130 (195)
T ss_dssp             CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-
T ss_pred             eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhcc
Confidence            766655  3445566667777887664 456889999999998754

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.24  E-value=1.2e-11  Score=124.16  Aligned_cols=213  Identities=15%  Similarity=0.168  Sum_probs=117.9

Q ss_pred             ccccccCCCCCCCccChHHHH---HHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        133 DWEGEEEGAFVPELGGLKGVR---ALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .|........++++.|.+..+   ..+...+..             ....+++|+||||||||++++++++.++.+++.+
T Consensus        15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            344444556666999999888   666666643             1336899999999999999999999999888877


Q ss_pred             ccccccCcchhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEecc-CHHHHHhcCc
Q psy11689        210 SAAQLYSPYVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGY-REQTADTANK  284 (390)
Q Consensus       210 ~~~~~~~~~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~-~~~~i~~t~~  284 (390)
                      ++...       ....++.+|..+.    ...+.||||||++.+-... .+.....+....+..+..+. ...   ..-.
T Consensus        82 ~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-q~~LL~~le~~~v~lI~att~n~~---~~l~  150 (447)
T 3pvs_A           82 SAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-QDAFLPHIEDGTITFIGATTENPS---FELN  150 (447)
T ss_dssp             ETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------CCHHHHHTTSCEEEEEESSCGG---GSSC
T ss_pred             EeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-HHHHHHHHhcCceEEEecCCCCcc---cccC
Confidence            65321       2233455555543    3578999999999975432 22233333333333332221 110   0001


Q ss_pred             hhHHHhHHHhhhhcCCchhHHHhhccccc--c-----cCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHc--
Q psy11689        285 PRIQRTKREYREQTADTAHKTRISRTNRG--Y-----REKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKR--  355 (390)
Q Consensus       285 ~~~~r~~~~~l~~l~~~~~r~~I~~~n~~--~-----r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r--  355 (390)
                      +.+........-..++..+...++.....  .     .....++..+..+++.++|.   ..++.+++..+...+...  
T Consensus       151 ~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd---~R~lln~Le~a~~~a~~~~~  227 (447)
T 3pvs_A          151 SALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD---ARRALNTLEMMADMAEVDDS  227 (447)
T ss_dssp             HHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC---HHHHHHHHHHHHHHSCBCTT
T ss_pred             HHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC---HHHHHHHHHHHHHhcccccC
Confidence            11211111111111223344333311111  0     11112223345677776664   678888888888876433  


Q ss_pred             cccccChhhhhhhHHHH
Q psy11689        356 EYREQTADTANKPRIQR  372 (390)
Q Consensus       356 ~~~~i~~~~~~~~~~~~  372 (390)
                      +...||.+++.+.+-+.
T Consensus       228 ~~~~It~e~v~~~l~~~  244 (447)
T 3pvs_A          228 GKRVLKPELLTEIAGER  244 (447)
T ss_dssp             SCEECCHHHHHHHHTCC
T ss_pred             CCCccCHHHHHHHHhhh
Confidence            44679999988776433

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.22  E-value=3e-11  Score=115.88  Aligned_cols=196  Identities=13%  Similarity=0.096  Sum_probs=105.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      .+.+++|+||||||||+|++++++.+   +.+++++++.++...+.+.........|.... ..+++|||||++.+.+.+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~  114 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE  114 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh
Confidence            46789999999999999999999988   78888888877654444333322223343333 358999999999987643


Q ss_pred             hHH-HHHHH---hhcCCCcEEEeccC-HHHHHhcCchhHHHhHHH-hhhhcC-CchhHHHhhcccccccCCCCCCCCcch
Q psy11689        254 YRE-QTADN---AKKPRIPRTNGGYR-EQTADTANKPRIQRTKRE-YREQTA-DTAHKTRISRTNRGYREKTADTANKPR  326 (390)
Q Consensus       254 ~~~-~~~~~---~~~~~~~~i~~~~~-~~~i~~t~~~~~~r~~~~-~l~~l~-~~~~r~~I~~~n~~~r~~~~~~vdl~~  326 (390)
                      ... .....   ........+..++. +..+. .-.+++...+.. ....++ +..++..|+...........++..+..
T Consensus       115 ~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~-~l~~~L~sR~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~  193 (324)
T 1l8q_A          115 RTQIEFFHIFNTLYLLEKQIILASDRHPQKLD-GVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDY  193 (324)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT-TSCHHHHHHHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCeEEEEecCChHHHH-HhhhHhhhcccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            222 22222   22223333433332 11111 112333322210 111222 344555544222111122222233566


Q ss_pred             hhhcCCCCCCCcHHHHHHHHHHHHH---HHH-cccccc-ChhhhhhhHHHHhcCcccc
Q psy11689        327 IPRTNRGYREYSAQNANTANKPRIQ---RTK-REYREQ-TADTANKPRIQRIGNLSQR  379 (390)
Q Consensus       327 la~~t~gfs~~gaDL~~l~~~A~~~---a~~-r~~~~i-~~~~~~~~~~~~~~~~~~~  379 (390)
                      +++.+ | .  .+++.+++..+...   +.. .+...+ |.+++.+.. +..+++...
T Consensus       194 l~~~~-g-~--~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~-~~~~~~~~~  246 (324)
T 1l8q_A          194 LLENT-K-N--VREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFV-ANYYAVKVE  246 (324)
T ss_dssp             HHHHC-S-S--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCHH
T ss_pred             HHHhC-C-C--HHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHH-HHHhCCCHH
Confidence            77887 4 4  78888888887765   111 233457 777776653 344555443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.22  E-value=2e-11  Score=116.59  Aligned_cols=213  Identities=16%  Similarity=0.102  Sum_probs=120.3

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY  218 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~  218 (390)
                      ....++++.|.+..++.+...+.....       . -..+.+++|+||||||||+++++++..++.+++.++++.+..  
T Consensus         7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--   76 (324)
T 1hqc_A            7 RPKTLDEYIGQERLKQKLRVYLEAAKA-------R-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--   76 (324)
T ss_dssp             CCCSTTTCCSCHHHHHHHHHHHHHHHH-------H-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred             CcccHHHhhCHHHHHHHHHHHHHHHHc-------c-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence            344566999999999998887754211       0 124578999999999999999999999998888777765422  


Q ss_pred             hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEE-----------eccCHHHHHhcCchhH
Q psy11689        219 VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTN-----------GGYREQTADTANKPRI  287 (390)
Q Consensus       219 ~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~-----------~~~~~~~i~~t~~~~~  287 (390)
                          ...+...|.. ....+.+|||||++.+... ........+.......+.           ...+..++++++++..
T Consensus        77 ----~~~l~~~l~~-~~~~~~~l~lDEi~~l~~~-~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~  150 (324)
T 1hqc_A           77 ----PGDLAAILAN-SLEEGDILFIDEIHRLSRQ-AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL  150 (324)
T ss_dssp             ----HHHHHHHHTT-TCCTTCEEEETTTTSCCHH-HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSS
T ss_pred             ----hHHHHHHHHH-hccCCCEEEEECCcccccc-hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCccc
Confidence                1222222222 1256889999999987633 222232333221111000           0012233445554322


Q ss_pred             HH-hHHHh---hhh--cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccC
Q psy11689        288 QR-TKREY---REQ--TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQT  361 (390)
Q Consensus       288 ~r-~~~~~---l~~--l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~  361 (390)
                      .+ .++..   ...  .++..+...++...........++..+..++..+.|+   ...+.+++..+...|...+...++
T Consensus       151 ~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~---~r~l~~~l~~~~~~a~~~~~~~i~  227 (324)
T 1hqc_A          151 ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT---MRVAKRLFRRVRDFAQVAGEEVIT  227 (324)
T ss_dssp             CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC---HHHHHHHHHHHTTTSTTTSCSCCC
T ss_pred             CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHhcCCCCC
Confidence            11 11111   111  1223333333311111111112222345677788775   678899999888777666667788


Q ss_pred             hhhhhhhHH
Q psy11689        362 ADTANKPRI  370 (390)
Q Consensus       362 ~~~~~~~~~  370 (390)
                      .+++..+.-
T Consensus       228 ~~~~~~~~~  236 (324)
T 1hqc_A          228 RERALEALA  236 (324)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776653

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.20  E-value=1.1e-11  Score=132.30  Aligned_cols=228  Identities=12%  Similarity=0.128  Sum_probs=131.2

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---------
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---------  202 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---------  202 (390)
                      ..|........++++.|.+...+.+.+.+..             ..+.+++|+||||||||++++++|...         
T Consensus       174 ~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~  240 (758)
T 1r6b_X          174 TNLNQLARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVM  240 (758)
T ss_dssp             CBHHHHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGG
T ss_pred             HhHHHHHhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhh
Confidence            3455555566788999999888887776642             356789999999999999999999876         


Q ss_pred             -ccchhcccccccc--CcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh----HHHHHHHhhcCCCcEEEeccC
Q psy11689        203 -VYRVLAASAAQLY--SPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY----REQTADNAKKPRIPRTNGGYR  275 (390)
Q Consensus       203 -~~~~~~i~~~~~~--~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~----~~~~~~~~~~~~~~~i~~~~~  275 (390)
                       +..++.++...+.  ..+.|..++.++.+|..+....++||||||++.+.+.+.    .......+... +.    ...
T Consensus       241 ~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~-l~----~~~  315 (758)
T 1r6b_X          241 ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-LS----SGK  315 (758)
T ss_dssp             TTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC-SS----SCC
T ss_pred             cCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH-Hh----CCC
Confidence             3344555555554  356778888999999999888899999999999975432    22222222211 11    111


Q ss_pred             HHHHHhcCchh----------HHHhHHHhhhhcCCchhHHHhhcccccc----cCCCCCCCCcchhhhcCCCCCC---Cc
Q psy11689        276 EQTADTANKPR----------IQRTKREYREQTADTAHKTRISRTNRGY----REKTADTANKPRIPRTNRGYRE---YS  338 (390)
Q Consensus       276 ~~~i~~t~~~~----------~~r~~~~~l~~l~~~~~r~~I~~~n~~~----r~~~~~~vdl~~la~~t~gfs~---~g  338 (390)
                      ..+|++++.++          +.+.+....-..|+..++..|+......    .....++-.+..++..+.||..   .+
T Consensus       316 ~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp  395 (758)
T 1r6b_X          316 IRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLP  395 (758)
T ss_dssp             CEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTT
T ss_pred             eEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCc
Confidence            22233333332          2221111111133444554443211100    0111111223445555555420   15


Q ss_pred             HHHHHHHHHHHHHHHH----ccccccChhhhhhhHHHHhcCccc
Q psy11689        339 AQNANTANKPRIQRTK----REYREQTADTANKPRIQRIGNLSQ  378 (390)
Q Consensus       339 aDL~~l~~~A~~~a~~----r~~~~i~~~~~~~~~~~~~~~~~~  378 (390)
                      ..+..++.+|...+..    .....++.+++.+++-. ..|++.
T Consensus       396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~-~~~ip~  438 (758)
T 1r6b_X          396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR-IARIPE  438 (758)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHH-HSCCCC
T ss_pred             hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHH-hcCCCc
Confidence            6788888887765543    23457888988877643 345543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.20  E-value=5.8e-12  Score=123.01  Aligned_cols=108  Identities=28%  Similarity=0.349  Sum_probs=81.7

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhh-cC-CCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc-chhh
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFER-LA-IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP-YVGE  221 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~-~~-~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~-~~g~  221 (390)
                      .|.|.+.+++.+...+............ .. ..++.++||+||||||||++|+++|..++.+++.+++.++... |.|.
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~   95 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE   95 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence            4789999999998888543322211110 11 1256789999999999999999999999999999999887744 7776


Q ss_pred             H-HHHHHHHHHHH----HhcCCeEEEEcCCCCCCCh
Q psy11689        222 A-EQNVTQLFHRA----RLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       222 ~-~~~i~~~f~~A----~~~~p~il~lDEid~~l~~  252 (390)
                      . ...+..+|..+    ....++||||||+|.+...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~  131 (363)
T 3hws_A           96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK  131 (363)
T ss_dssp             HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC
T ss_pred             cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc
Confidence            5 45677777765    4557899999999988765

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.20  E-value=6.4e-12  Score=125.31  Aligned_cols=105  Identities=22%  Similarity=0.295  Sum_probs=83.8

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCC-CCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccC-cchhh-
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIP-KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYS-PYVGE-  221 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~-~~~g~-  221 (390)
                      +|+|.+.+|+.+..++..+++++..+..+... ++.++||+||||||||++++++|..++.+++.++++.+.. +|.|. 
T Consensus        16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d   95 (444)
T 1g41_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE   95 (444)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred             HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence            79999999999999998776666655544332 5688999999999999999999999999999999988887 58885 


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      .++.++.+|..|....    ++||++.+.+..
T Consensus        96 ~e~~lr~lf~~a~~~~----~~De~d~~~~~~  123 (444)
T 1g41_A           96 VDSIIRDLTDSAMKLV----RQQEIAKNRARA  123 (444)
T ss_dssp             THHHHHHHHHHHHHHH----HHHHHHSCC---
T ss_pred             HHHHHHHHHHHHHhcc----hhhhhhhhhccc
Confidence            7888999999987654    479988876543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.19  E-value=1.4e-11  Score=131.69  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=73.9

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhh
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGE  221 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~  221 (390)
                      ++.|.+..++.+...+.......   . ....+..++||+||||||||++|+++|..+   +.+++.++++++...+...
T Consensus       492 ~viGq~~a~~~l~~~i~~~~~~~---~-~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~  567 (758)
T 3pxi_A          492 RVIGQDEAVVAVAKAVRRARAGL---K-DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS  567 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHTTTC---S-CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred             cCcChHHHHHHHHHHHHHHHccc---C-CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence            57788888888877775421110   0 001223379999999999999999999887   5789999999888776554


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK  263 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~  263 (390)
                      .    ...+...+...++||||||++.+ .....+...+.+.
T Consensus       568 ~----~~l~~~~~~~~~~vl~lDEi~~~-~~~~~~~Ll~~le  604 (758)
T 3pxi_A          568 G----GQLTEKVRRKPYSVVLLDAIEKA-HPDVFNILLQVLE  604 (758)
T ss_dssp             -------CHHHHHHCSSSEEEEECGGGS-CHHHHHHHHHHHH
T ss_pred             c----chhhHHHHhCCCeEEEEeCcccc-CHHHHHHHHHHhc
Confidence            1    12333445567789999999986 4444444444443

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.18  E-value=5.5e-11  Score=115.79  Aligned_cols=215  Identities=14%  Similarity=0.135  Sum_probs=119.0

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---------ccchhccccccc
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---------VYRVLAASAAQL  214 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---------~~~~~~i~~~~~  214 (390)
                      +++.|.+...+.+...+.....         ...+..++|+||||||||+++++++...         +.+++.+++...
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   89 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR   89 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence            4789999988888877643211         2456789999999999999999999887         677777876543


Q ss_pred             cCcc----------------hhh-HHHHHHHHHHHHHhc-CCeEEEEcCCCCCCChhhHHHHHHHh----h----cCCCc
Q psy11689        215 YSPY----------------VGE-AEQNVTQLFHRARLA-APAILFIDEIERTYNCEYREQTADNA----K----KPRIP  268 (390)
Q Consensus       215 ~~~~----------------~g~-~~~~i~~~f~~A~~~-~p~il~lDEid~~l~~r~~~~~~~~~----~----~~~~~  268 (390)
                      ...+                .+. .......++...... .|.+|||||++.+...+........+    .    ...+.
T Consensus        90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~  169 (387)
T 2v1u_A           90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVS  169 (387)
T ss_dssp             CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CE
T ss_pred             CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEE
Confidence            2211                111 122234444444333 48899999999986542122222221    1    12223


Q ss_pred             EEEeccCHHHHHhcCchhHHHhHHHhhhhcC--CchhHHHhhccccc--ccCCCCCCCCcchhhhcCC---CCCCCcHHH
Q psy11689        269 RTNGGYREQTADTANKPRIQRTKREYREQTA--DTAHKTRISRTNRG--YREKTADTANKPRIPRTNR---GYREYSAQN  341 (390)
Q Consensus       269 ~i~~~~~~~~i~~t~~~~~~r~~~~~l~~l~--~~~~r~~I~~~n~~--~r~~~~~~vdl~~la~~t~---gfs~~gaDL  341 (390)
                      .+..++...... .-.+.+.+.+......++  +..+...++.....  ......++..+..+++.+.   |.   ...+
T Consensus       170 ~I~~t~~~~~~~-~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~---~r~~  245 (387)
T 2v1u_A          170 LVGITNSLGFVE-NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGD---ARRA  245 (387)
T ss_dssp             EEEECSCSTTSS-SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCC---HHHH
T ss_pred             EEEEECCCchHh-hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccC---HHHH
Confidence            333333221000 001122211110111222  23344444321111  1112223333556666665   54   5778


Q ss_pred             HHHHHHHHHHHHHccccccChhhhhhhHHH
Q psy11689        342 ANTANKPRIQRTKREYREQTADTANKPRIQ  371 (390)
Q Consensus       342 ~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~  371 (390)
                      .+++..|...|..++...++.+++.++.-.
T Consensus       246 ~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~  275 (387)
T 2v1u_A          246 LDLLRVAGEIAERRREERVRREHVYSARAE  275 (387)
T ss_dssp             HHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence            899999998888778889999999887644

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.17  E-value=1.4e-10  Score=111.07  Aligned_cols=108  Identities=16%  Similarity=0.085  Sum_probs=80.7

Q ss_pred             CccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        130 ERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       130 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      ....|..++....++++.|.+..++.+...+..            -..+..+|++||||||||++++++|++.+.+++.+
T Consensus        12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           12 KEHILEQKYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            345788888888899999999999999888762            13456788899999999999999999999999888


Q ss_pred             ccccccCcchhhHHHHHHHHHHHHHhc-----CCeEEEEcCCCCCCChhhHH
Q psy11689        210 SAAQLYSPYVGEAEQNVTQLFHRARLA-----APAILFIDEIERTYNCEYRE  256 (390)
Q Consensus       210 ~~~~~~~~~~g~~~~~i~~~f~~A~~~-----~p~il~lDEid~~l~~r~~~  256 (390)
                      ++++..       ...++..+......     .+.||||||++.+.+....+
T Consensus        80 ~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~  124 (324)
T 3u61_B           80 NGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQR  124 (324)
T ss_dssp             ETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHH
T ss_pred             cccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHH
Confidence            875521       23344433333222     57899999999986333333

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.16  E-value=8.8e-11  Score=105.97  Aligned_cols=210  Identities=10%  Similarity=0.053  Sum_probs=111.8

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc--
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA--  211 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~--  211 (390)
                      |...+....+.++.|.+..++.+...+...            ..+..++|+||||+|||+++++++...+........  
T Consensus        13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~   80 (250)
T 1njg_A           13 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC   80 (250)
T ss_dssp             HHHHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred             HhhccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence            444444555558999999999888877531            234579999999999999999999887543211100  


Q ss_pred             --------------ccccCc--chhhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcE
Q psy11689        212 --------------AQLYSP--YVGEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPR  269 (390)
Q Consensus       212 --------------~~~~~~--~~g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~  269 (390)
                                    .++...  ........+..++..+.    ...|.+|+|||++.+ +....+.....+...  ....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-~~~~~~~l~~~l~~~~~~~~~  159 (250)
T 1njg_A           81 GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-SRHSFNALLKTLEEPPEHVKF  159 (250)
T ss_dssp             SCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-CHHHHHHHHHHHHSCCTTEEE
T ss_pred             cccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccc-cHHHHHHHHHHHhcCCCceEE
Confidence                          011100  00122234455555432    335799999999985 444444444444332  2223


Q ss_pred             EEeccCHHHHHhcCchhHHHhHHHhhhhcC--CchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHH
Q psy11689        270 TNGGYREQTADTANKPRIQRTKREYREQTA--DTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANK  347 (390)
Q Consensus       270 i~~~~~~~~i~~t~~~~~~r~~~~~l~~l~--~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~  347 (390)
                      +..++....+    .+.+.+..  ....++  +..+...++...........++..+..+++.+.| .  ..++.+++..
T Consensus       160 i~~t~~~~~~----~~~l~~r~--~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~--~~~~~~~~~~  230 (250)
T 1njg_A          160 LLATTDPQKL----PVTILSRC--LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S--LRDALSLTDQ  230 (250)
T ss_dssp             EEEESCGGGS----CHHHHTTS--EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-C--HHHHHHHHHH
T ss_pred             EEEeCChHhC----CHHHHHHh--hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-C--HHHHHHHHHH
Confidence            3333322111    01111100  111122  2233333321111111111222335678888888 5  7888888888


Q ss_pred             HHHHHHHccccccChhhhhhhH
Q psy11689        348 PRIQRTKREYREQTADTANKPR  369 (390)
Q Consensus       348 A~~~a~~r~~~~i~~~~~~~~~  369 (390)
                      |...    +...||.+++.+++
T Consensus       231 ~~~~----~~~~i~~~~v~~~~  248 (250)
T 1njg_A          231 AIAS----GDGQVSTQAVSAML  248 (250)
T ss_dssp             HHTT----TTSSBCHHHHHHHS
T ss_pred             HHhc----cCceecHHHHHHHh
Confidence            7543    23479999887754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.16  E-value=4.7e-11  Score=103.88  Aligned_cols=99  Identities=20%  Similarity=0.313  Sum_probs=74.2

Q ss_pred             CCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhc
Q psy11689        139 EGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLA  208 (390)
Q Consensus       139 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~  208 (390)
                      ....++++.|.+...+.+.+.+..             ..+.+++|+||||||||+++++++..+          +.+++.
T Consensus        17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~   83 (187)
T 2p65_A           17 RAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS   83 (187)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred             hccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence            344455888988877777766532             346789999999999999999999886          566666


Q ss_pred             ccccccc--CcchhhHHHHHHHHHHHHHhc-CCeEEEEcCCCCCC
Q psy11689        209 ASAAQLY--SPYVGEAEQNVTQLFHRARLA-APAILFIDEIERTY  250 (390)
Q Consensus       209 i~~~~~~--~~~~g~~~~~i~~~f~~A~~~-~p~il~lDEid~~l  250 (390)
                      +++..+.  ..+.+.....+..++..+... .|.+|||||++.+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~  128 (187)
T 2p65_A           84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVV  128 (187)
T ss_dssp             ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGS
T ss_pred             EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhc
Confidence            6665544  234455566777788777665 78899999999987

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.16  E-value=1.9e-10  Score=102.60  Aligned_cols=99  Identities=22%  Similarity=0.247  Sum_probs=64.3

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----cchhc
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----YRVLA  208 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~~~~~  208 (390)
                      |...+....+.++.|.+..++.+.+.+...             .+.+++|+||||+|||+++++++....     ..++.
T Consensus         7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~   73 (226)
T 2chg_A            7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE   73 (226)
T ss_dssp             HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred             HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence            444445555568999999999888877531             233599999999999999999998753     23333


Q ss_pred             cccccccCcchhhHHHHHHHHHHHHH------hcCCeEEEEcCCCCCCC
Q psy11689        209 ASAAQLYSPYVGEAEQNVTQLFHRAR------LAAPAILFIDEIERTYN  251 (390)
Q Consensus       209 i~~~~~~~~~~g~~~~~i~~~f~~A~------~~~p~il~lDEid~~l~  251 (390)
                      +++.....      ...+...+....      ...+.+|+|||++.+..
T Consensus        74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~  116 (226)
T 2chg_A           74 MNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA  116 (226)
T ss_dssp             EETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH
T ss_pred             eccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH
Confidence            44332211      112222222221      25689999999998754

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=99.13  E-value=5.2e-11  Score=134.67  Aligned_cols=110  Identities=14%  Similarity=0.129  Sum_probs=85.0

Q ss_pred             CccChHHHHHHHHHHHhccccC----------HHHhhh------c------------CCCCCceEEEEcCCCChHHHHHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKY----------AREFER------L------------AIPKPKGILLYGPPGCAKTSLVR  196 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~----------~~~~~~------~------------~~~~~~~vLl~GppGtGKT~La~  196 (390)
                      +++|+++.|+.+.+.+.+++.+          ++.|+.      .            |.+.++.+|+|||||||||+||+
T Consensus      1021 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la~ 1100 (1706)
T 3cmw_A         1021 SMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 1100 (1706)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHH
T ss_pred             ecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHHHHH
Confidence            9999999999999999998844          455554      2            24566679999999999999999


Q ss_pred             HHHHhhccc---hhcccccccc------------Ccchhh----HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689        197 TLAAHSVYR---VLAASAAQLY------------SPYVGE----AEQNVTQLFHRARLAAPAILFIDEIERTYNCEY  254 (390)
Q Consensus       197 aia~~~~~~---~~~i~~~~~~------------~~~~g~----~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~  254 (390)
                      +++.+....   .++++..+..            ..|.++    +++.++.+|..|+...|+++|+|+++++.+.+.
T Consensus      1101 ~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~~ 1177 (1706)
T 3cmw_A         1101 QVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAE 1177 (1706)
T ss_dssp             HHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHH
T ss_pred             HHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcccc
Confidence            999877543   3333333322            556666    899999999999999999999999999998854

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.12  E-value=2.1e-11  Score=130.26  Aligned_cols=228  Identities=14%  Similarity=0.081  Sum_probs=122.2

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccceeeCCC-CCccCccccccc--c--CCccc----chHHHHH
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLGVIDLPT-APQGRETELPFT--K--LNEEV----ELSENVQ   80 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~~i~ip~-~~~~r~~~l~~~--~--~~~~v----~l~~~la   80 (390)
                      .++.+|++||.+..         .....+||+|.+  ||..+.++. +.++|.++|...  .  ....+    +..+.++
T Consensus       314 ~~~~~I~at~~~~~---------~~~~~~d~aL~~--Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~  382 (758)
T 1r6b_X          314 GKIRVIGSTTYQEF---------SNIFEKDRALAR--RFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAV  382 (758)
T ss_dssp             CCCEEEEEECHHHH---------HCCCCCTTSSGG--GEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             CCeEEEEEeCchHH---------hhhhhcCHHHHh--CceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            35678888885321         012235666665  888777777 456777777641  0  01111    1236688


Q ss_pred             HhhcCCcccc-----ccccccccchhhhcCCCCCCCCCCCCchhhHh-----hhcccccCcccccccc-----CCCCCCC
Q psy11689         81 REEEGIAGEN-----LQRGGGEEGIELREGGQRNGGEGGIGLNERVQ-----RIGEGREERRDWEGEE-----EGAFVPE  145 (390)
Q Consensus        81 ~~t~G~~g~~-----l~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~  145 (390)
                      +.+.||....     +..++.+++........ ...  ...+.....     ...........|++..     ......+
T Consensus       383 ~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~-~~~--~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~  459 (758)
T 1r6b_X          383 ELAVKYINDRHLPDKAIDVIDEAGARARLMPV-SKR--KKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKML  459 (758)
T ss_dssp             HHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSS-CCC--CCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTT
T ss_pred             HHhhhhcccccCchHHHHHHHHHHHHHhcccc-ccc--CCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhh
Confidence            8888875442     22233343332221100 000  011111111     1111111122222100     0001125


Q ss_pred             ccChHHHHHHHHHHHhccccCHHHhhhcCC----CCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc----
Q psy11689        146 LGGLKGVRALMEKTVEWPFKYAREFERLAI----PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP----  217 (390)
Q Consensus       146 i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~----  217 (390)
                      +.|.+..++.+...+...        ..+.    .+..++||+||||||||++|+++|..++.+++.++++++...    
T Consensus       460 v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~  531 (758)
T 1r6b_X          460 VFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS  531 (758)
T ss_dssp             SCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCS
T ss_pred             ccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHh
Confidence            778888877777766431        1111    234579999999999999999999999999999988876543    


Q ss_pred             --------chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        218 --------YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       218 --------~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                              |+|..+.  ..+........++||||||++.+- +...+...+.+
T Consensus       532 ~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~-~~~~~~Ll~~l  581 (758)
T 1r6b_X          532 RLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-PDVFNILLQVM  581 (758)
T ss_dssp             SSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC-HHHHHHHHHHH
T ss_pred             hhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC-HHHHHHHHHHh
Confidence                    4443322  123444455678999999999863 33333333333

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.12  E-value=9.7e-11  Score=118.35  Aligned_cols=98  Identities=24%  Similarity=0.327  Sum_probs=72.7

Q ss_pred             ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh--------
Q psy11689        131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS--------  202 (390)
Q Consensus       131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~--------  202 (390)
                      ...|........++++.|.+...+.+.+.+..             ....++||+||||||||++++++|..+        
T Consensus       167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~  233 (468)
T 3pxg_A          167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI  233 (468)
T ss_dssp             CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT
T ss_pred             HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence            34565556667788999999999888877643             245689999999999999999999886        


Q ss_pred             --ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEc
Q psy11689        203 --VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFID  244 (390)
Q Consensus       203 --~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lD  244 (390)
                        +.+++.+++.   ..+.|+.+..++.+|..+....|.|||+|
T Consensus       234 l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD  274 (468)
T 3pxg_A          234 LRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID  274 (468)
T ss_dssp             TSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred             hcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence              5667777766   55666666778899999999999999999

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.11  E-value=9.6e-10  Score=107.21  Aligned_cols=217  Identities=12%  Similarity=0.055  Sum_probs=119.9

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCc--eEEEEcCCCChHHHHHHHHHHhh----ccchhccccccccCc
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPK--GILLYGPPGCAKTSLVRTLAAHS----VYRVLAASAAQLYSP  217 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~vLl~GppGtGKT~La~aia~~~----~~~~~~i~~~~~~~~  217 (390)
                      +++.|-+...+.+...+......         ..+.  .++|+||||+|||+++++++...    +.+++.+++......
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~   87 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF   87 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence            47899999888888877542211         2334  89999999999999999999887    566677775443211


Q ss_pred             c----------------hhh-HHHHHHHHHHHHH-hcCCeEEEEcCCCCCCChhhHHHHHHHhhc------CCCcEEEec
Q psy11689        218 Y----------------VGE-AEQNVTQLFHRAR-LAAPAILFIDEIERTYNCEYREQTADNAKK------PRIPRTNGG  273 (390)
Q Consensus       218 ~----------------~g~-~~~~i~~~f~~A~-~~~p~il~lDEid~~l~~r~~~~~~~~~~~------~~~~~i~~~  273 (390)
                      .                .+. .......+..... ...|.||+|||++.+ +..........+..      ..+..+..+
T Consensus        88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~  166 (389)
T 1fnn_A           88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVG  166 (389)
T ss_dssp             HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEE
T ss_pred             HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEE
Confidence            0                011 1112222222222 245899999999998 44433333333321      244445555


Q ss_pred             cCHHHHHhcCchhHHHhHHHhhhhcCC--chhHHHhhccccc--ccCCCCCCCCcchhhhcCCCC------CCCcHHHHH
Q psy11689        274 YREQTADTANKPRIQRTKREYREQTAD--TAHKTRISRTNRG--YREKTADTANKPRIPRTNRGY------REYSAQNAN  343 (390)
Q Consensus       274 ~~~~~i~~t~~~~~~r~~~~~l~~l~~--~~~r~~I~~~n~~--~r~~~~~~vdl~~la~~t~gf------s~~gaDL~~  343 (390)
                      +........ .+.+.+.+......++.  ..+...++.....  ......++..+..+++.+.+.      .-....+.+
T Consensus       167 ~~~~~~~~l-~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~  245 (389)
T 1fnn_A          167 HNDAVLNNL-DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID  245 (389)
T ss_dssp             SSTHHHHTS-CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred             CCchHHHHh-CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence            554322222 22232222111122332  2223333211110  011122223345677777322      211567888


Q ss_pred             HHHHHHHHHHHccccccChhhhhhhHHH
Q psy11689        344 TANKPRIQRTKREYREQTADTANKPRIQ  371 (390)
Q Consensus       344 l~~~A~~~a~~r~~~~i~~~~~~~~~~~  371 (390)
                      ++..|...|..++...++.+++.++.-.
T Consensus       246 ~l~~a~~~a~~~~~~~i~~~~v~~~~~~  273 (389)
T 1fnn_A          246 ILYRSAYAAQQNGRKHIAPEDVRKSSKE  273 (389)
T ss_dssp             HHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence            9999999888888888999998877644

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.09  E-value=3.1e-10  Score=110.29  Aligned_cols=214  Identities=13%  Similarity=0.139  Sum_probs=117.9

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh------ccchhccccccccCc
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS------VYRVLAASAAQLYSP  217 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~------~~~~~~i~~~~~~~~  217 (390)
                      +++.|.+...+.+.+.+.....         -..+..++|+||||+|||+|+++++...      +.+++.+++......
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~   90 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP   90 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSH
T ss_pred             CCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCH
Confidence            4788988888888776643211         1457789999999999999999999887      667777765432110


Q ss_pred             ----------------chhh-HHHHHHHHHHHHHhcC-CeEEEEcCCCCCCCh---hhHHHHHHHhh---cCCCcEEEec
Q psy11689        218 ----------------YVGE-AEQNVTQLFHRARLAA-PAILFIDEIERTYNC---EYREQTADNAK---KPRIPRTNGG  273 (390)
Q Consensus       218 ----------------~~g~-~~~~i~~~f~~A~~~~-p~il~lDEid~~l~~---r~~~~~~~~~~---~~~~~~i~~~  273 (390)
                                      ..+. .......++....... |.||+|||++.+.+.   ..-........   ...+..+..+
T Consensus        91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~  170 (386)
T 2qby_A           91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGIT  170 (386)
T ss_dssp             HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEE
Confidence                            0111 2223444444444443 899999999998643   22222323332   2234445555


Q ss_pred             cCHHHHHhcCchhHHHhHHHhhhhcC--CchhHHHhhccccc--ccCCCCCCCCcchhhhcCC---CCCCCcHHHHHHHH
Q psy11689        274 YREQTADTANKPRIQRTKREYREQTA--DTAHKTRISRTNRG--YREKTADTANKPRIPRTNR---GYREYSAQNANTAN  346 (390)
Q Consensus       274 ~~~~~i~~t~~~~~~r~~~~~l~~l~--~~~~r~~I~~~n~~--~r~~~~~~vdl~~la~~t~---gfs~~gaDL~~l~~  346 (390)
                      +........ .+.+.+.+......++  +..+...++.....  ......++-.+..+++.+.   |.   ...+.+++.
T Consensus       171 ~~~~~~~~~-~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~---~r~~~~ll~  246 (386)
T 2qby_A          171 NDVKFVDLL-DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD---ARRALDLLR  246 (386)
T ss_dssp             SCGGGGGGC-TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC---HHHHHHHHH
T ss_pred             CCCChHhhh-CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC---HHHHHHHHH
Confidence            543221111 1222222211111222  23333334321110  0011111122344556555   54   566777999


Q ss_pred             HHHHHHHHccccccChhhhhhhHH
Q psy11689        347 KPRIQRTKREYREQTADTANKPRI  370 (390)
Q Consensus       347 ~A~~~a~~r~~~~i~~~~~~~~~~  370 (390)
                      .|...|...+...++.+++.++.-
T Consensus       247 ~a~~~a~~~~~~~i~~~~v~~a~~  270 (386)
T 2qby_A          247 VSGEIAERMKDTKVKEEYVYMAKE  270 (386)
T ss_dssp             HHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCccCHHHHHHHHH
Confidence            998888877778899999987653

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.06  E-value=1.5e-10  Score=125.19  Aligned_cols=107  Identities=21%  Similarity=0.268  Sum_probs=74.6

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------c
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------V  203 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~  203 (390)
                      |........++++.|.+.....+.+.+..             ..+.+++|+||||||||++++++|..+          +
T Consensus       160 l~~~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~  226 (854)
T 1qvr_A          160 LTRLAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKG  226 (854)
T ss_dssp             HHHHHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTT
T ss_pred             HHHHHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcC
Confidence            44444566777999999888777776532             245679999999999999999999887          6


Q ss_pred             cchhcccccccc--CcchhhHHHHHHHHHHHHHhc-CCeEEEEcCCCCCCChh
Q psy11689        204 YRVLAASAAQLY--SPYVGEAEQNVTQLFHRARLA-APAILFIDEIERTYNCE  253 (390)
Q Consensus       204 ~~~~~i~~~~~~--~~~~g~~~~~i~~~f~~A~~~-~p~il~lDEid~~l~~r  253 (390)
                      .+++.+++..+.  ..+.|+.+..++.+|..+... .|+||||||++.+.+..
T Consensus       227 ~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~  279 (854)
T 1qvr_A          227 KRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAG  279 (854)
T ss_dssp             CEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------
T ss_pred             CeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccC
Confidence            778888887776  456778888899999998875 78999999999998654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.06  E-value=9.2e-10  Score=106.26  Aligned_cols=210  Identities=18%  Similarity=0.172  Sum_probs=112.5

Q ss_pred             CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhh
Q psy11689        142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGE  221 (390)
Q Consensus       142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~  221 (390)
                      .++++.|.+.+++.+...+.....     .   -.++..++|+||||+|||||++++|+..+.++...+++....     
T Consensus        23 ~l~~~~g~~~~~~~l~~~i~~~~~-----~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-----   89 (334)
T 1in4_A           23 SLDEFIGQENVKKKLSLALEAAKM-----R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-----   89 (334)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHH-----H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred             cHHHccCcHHHHHHHHHHHHHHHh-----c---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence            334777777777777766543210     0   134578999999999999999999999987665444432211     


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEe-c----------cCHHHHHhcCchhHH-H
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNG-G----------YREQTADTANKPRIQ-R  289 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~-~----------~~~~~i~~t~~~~~~-r  289 (390)
                       ...+..++..  ...+.|+|+||++.+... ..+.....+.......+.. +          .+...+.+++++..+ .
T Consensus        90 -~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~  165 (334)
T 1in4_A           90 -QGDMAAILTS--LERGDVLFIDEIHRLNKA-VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSS  165 (334)
T ss_dssp             -HHHHHHHHHH--CCTTCEEEEETGGGCCHH-HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCH
T ss_pred             -HHHHHHHHHH--ccCCCEEEEcchhhcCHH-HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCH
Confidence             1223333322  245689999999987642 2222222222111100000 0          001111223332211 1


Q ss_pred             hHHHh---hhhcCC--chhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhh
Q psy11689        290 TKREY---REQTAD--TAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADT  364 (390)
Q Consensus       290 ~~~~~---l~~l~~--~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~  364 (390)
                      .++..   ...++.  ......++...........++..+..||+++.|.   .+++.++++++...|..++...||.++
T Consensus       166 ~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~---~R~a~~ll~~~~~~a~~~~~~~It~~~  242 (334)
T 1in4_A          166 PLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT---PRIAIRLTKRVRDMLTVVKADRINTDI  242 (334)
T ss_dssp             HHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHHTCSSBCHHH
T ss_pred             HHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence            11111   112332  2333333211111111112222356778888875   678899999999888888778899998


Q ss_pred             hhhhHHH
Q psy11689        365 ANKPRIQ  371 (390)
Q Consensus       365 ~~~~~~~  371 (390)
                      +.++.-.
T Consensus       243 v~~al~~  249 (334)
T 1in4_A          243 VLKTMEV  249 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.06  E-value=2.2e-10  Score=112.19  Aligned_cols=107  Identities=30%  Similarity=0.399  Sum_probs=71.9

Q ss_pred             CccChHHHHHHHHHHHhccccCHHH------------------hhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYARE------------------FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .|.|.+.+++.+...+..+......                  ... ...++.++||+||||||||++|+++|..++.++
T Consensus        22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~  100 (376)
T 1um8_A           22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI  100 (376)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            6899999999999887533332221                  011 123567899999999999999999999999999


Q ss_pred             hcccccccc-CcchhhH-HHHHHHHHHHH----HhcCCeEEEEcCCCCCCCh
Q psy11689        207 LAASAAQLY-SPYVGEA-EQNVTQLFHRA----RLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       207 ~~i~~~~~~-~~~~g~~-~~~i~~~f~~A----~~~~p~il~lDEid~~l~~  252 (390)
                      +.+++..+. ..+.|.. +..+...|..+    ....++||||||++.+...
T Consensus       101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~  152 (376)
T 1um8_A          101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL  152 (376)
T ss_dssp             EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred             EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh
Confidence            988887765 3444443 33455555432    2346899999999998765

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.05  E-value=6.9e-10  Score=107.00  Aligned_cols=207  Identities=14%  Similarity=0.085  Sum_probs=108.1

Q ss_pred             ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc-----
Q psy11689        131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR-----  205 (390)
Q Consensus       131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~-----  205 (390)
                      ...|..++....++++.|.+.+++.+...+...             ...+++|+||||||||+++++++...+.+     
T Consensus        24 ~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~   90 (353)
T 1sxj_D           24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS   90 (353)
T ss_dssp             --CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence            457888888888889999999998888776431             22349999999999999999999886532     


Q ss_pred             -hhccccccccCcchhhHHHHHHHHHHHHH----------------hcCCeEEEEcCCCCCCChhhHHHHHHHhhcCC--
Q psy11689        206 -VLAASAAQLYSPYVGEAEQNVTQLFHRAR----------------LAAPAILFIDEIERTYNCEYREQTADNAKKPR--  266 (390)
Q Consensus       206 -~~~i~~~~~~~~~~g~~~~~i~~~f~~A~----------------~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~--  266 (390)
                       ++.+++.+...      ...++..+....                ...+.|||+||++.+... ..+.....+....  
T Consensus        91 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~  163 (353)
T 1sxj_D           91 RILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-AQSALRRTMETYSGV  163 (353)
T ss_dssp             SEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTT
T ss_pred             ceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-HHHHHHHHHHhcCCC
Confidence             33444433211      111111111111                124569999999987543 3333333333321  


Q ss_pred             CcEEEeccCHHHHHhcCchhHHHhHHHh--hhhcC--CchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHH
Q psy11689        267 IPRTNGGYREQTADTANKPRIQRTKREY--REQTA--DTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNA  342 (390)
Q Consensus       267 ~~~i~~~~~~~~i~~t~~~~~~r~~~~~--l~~l~--~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~  342 (390)
                      ...+..++...        .+..++...  ...+.  ...+...++...........++..+..+++.+.|.   ...+.
T Consensus       164 ~~~il~~~~~~--------~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~---~r~~~  232 (353)
T 1sxj_D          164 TRFCLICNYVT--------RIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD---LRRGI  232 (353)
T ss_dssp             EEEEEEESCGG--------GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC---HHHHH
T ss_pred             ceEEEEeCchh--------hCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC---HHHHH
Confidence            11222222211        111111111  11111  12222222211111111112223356677777764   45566


Q ss_pred             HHHHHHHHHHHHcccc-ccChhhhhhh
Q psy11689        343 NTANKPRIQRTKREYR-EQTADTANKP  368 (390)
Q Consensus       343 ~l~~~A~~~a~~r~~~-~i~~~~~~~~  368 (390)
                      +++..++..+...+.. .||.+++.+.
T Consensus       233 ~~l~~~~~~~~~~~~~~~It~~~v~~~  259 (353)
T 1sxj_D          233 TLLQSASKGAQYLGDGKNITSTQVEEL  259 (353)
T ss_dssp             HHHHHTHHHHHHHCSCCCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCccCccccHHHHHHH
Confidence            6677666665433222 6888887654

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*

Probab=99.02  E-value=2.5e-10  Score=88.58  Aligned_cols=82  Identities=11%  Similarity=0.011  Sum_probs=58.1

Q ss_pred             hhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCcccccc
Q psy11689        302 AHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQRNR  381 (390)
Q Consensus       302 ~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~  381 (390)
                      ..|..|+..... .....+++|+..||+.|+|||  ||||+++|++|++.|++++...|+++||..++-+...|..++..
T Consensus         4 ~~R~~Il~~~~~-~~~~~~dvdl~~lA~~t~G~S--GADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~   80 (88)
T 3vlf_B            4 EGRANIFRIHSK-SMSVERGIRWELISRLCPNST--GAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS   80 (88)
T ss_dssp             SHHHHHHHHHHT-TSCBCSCCCHHHHHHTCSSCC--HHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHC-CCCCCCccCHHHHHHHcCCCc--HHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence            455555432221 122356899999999999999  99999999999999999999999999999999999999988877


Q ss_pred             CCCcc
Q psy11689        382 SSPKK  386 (390)
Q Consensus       382 ~~~~~  386 (390)
                      ...+.
T Consensus        81 ~~~y~   85 (88)
T 3vlf_B           81 TSRYM   85 (88)
T ss_dssp             -----
T ss_pred             hhHHh
Confidence            66553

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.99  E-value=5.8e-10  Score=108.80  Aligned_cols=215  Identities=12%  Similarity=0.049  Sum_probs=112.6

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh-----------ccchhccccc
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-----------VYRVLAASAA  212 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-----------~~~~~~i~~~  212 (390)
                      +++.|.+...+.+...+.....         -..+..++|+||||||||+++++++.++           +.+++.+++.
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~   90 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR   90 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence            3789999999888887754221         1356789999999999999999999887           7777777765


Q ss_pred             ccc-Cc-----------------chhh-HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEE
Q psy11689        213 QLY-SP-----------------YVGE-AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTN  271 (390)
Q Consensus       213 ~~~-~~-----------------~~g~-~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~  271 (390)
                      ... ..                 ..+. ....+..++..+.... .||||||++.+............+...  .+..+.
T Consensus        91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~  169 (384)
T 2qby_B           91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIM  169 (384)
T ss_dssp             HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEE
T ss_pred             cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcCCcceEEEE
Confidence            432 10                 0011 1222344444443333 499999999875432112202233222  222222


Q ss_pred             eccCHHHHHhcCchhHHHhHHHhhhhcC--CchhHHHhhcccc--cccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHH
Q psy11689        272 GGYREQTADTANKPRIQRTKREYREQTA--DTAHKTRISRTNR--GYREKTADTANKPRIPRTNRGYREYSAQNANTANK  347 (390)
Q Consensus       272 ~~~~~~~i~~t~~~~~~r~~~~~l~~l~--~~~~r~~I~~~n~--~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~  347 (390)
                      .++...... .-.+.+.+.+.. ...++  +..+...++....  .......++..+..+++.+.++.-....+.+++..
T Consensus       170 ~t~~~~~~~-~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~  247 (384)
T 2qby_B          170 ISNDINVRD-YMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFR  247 (384)
T ss_dssp             ECSSTTTTT-TSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             EECCCchHh-hhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            222210000 001111111100 11222  2334444432211  11111222233456677666332113456678888


Q ss_pred             HHHHHHHccccccChhhhhhhHHHH
Q psy11689        348 PRIQRTKREYREQTADTANKPRIQR  372 (390)
Q Consensus       348 A~~~a~~r~~~~i~~~~~~~~~~~~  372 (390)
                      |...|.  +...|+.+++.+++-..
T Consensus       248 a~~~a~--~~~~i~~~~v~~~~~~~  270 (384)
T 2qby_B          248 AAQLAS--GGGIIRKEHVDKAIVDY  270 (384)
T ss_dssp             HHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred             HHHHhc--CCCccCHHHHHHHHHHH
Confidence            877765  55689999988876443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.99  E-value=9.9e-10  Score=96.07  Aligned_cols=82  Identities=16%  Similarity=0.181  Sum_probs=51.2

Q ss_pred             hhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----ccchhccccccccCcchhhHHHH-HHHHHHHHHhcCCeEEEEcC
Q psy11689        171 ERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----VYRVLAASAAQLYSPYVGEAEQN-VTQLFHRARLAAPAILFIDE  245 (390)
Q Consensus       171 ~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~~~~~~i~~~~~~~~~~g~~~~~-i~~~f~~A~~~~p~il~lDE  245 (390)
                      .++.+..+.+++|+||||||||||++++++..    |..++.++..++...+....... ....+  ....+|.+|+|||
T Consensus        31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~llilDE  108 (180)
T 3ec2_A           31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFL--KTVLNSPVLVLDD  108 (180)
T ss_dssp             HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHH--HHHHTCSEEEEET
T ss_pred             HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHH--HHhcCCCEEEEeC
Confidence            34455678999999999999999999999776    44555555554433221110000 00111  1234789999999


Q ss_pred             CCCC-CChhh
Q psy11689        246 IERT-YNCEY  254 (390)
Q Consensus       246 id~~-l~~r~  254 (390)
                      ++.. ++...
T Consensus       109 ~~~~~~~~~~  118 (180)
T 3ec2_A          109 LGSERLSDWQ  118 (180)
T ss_dssp             CSSSCCCHHH
T ss_pred             CCCCcCCHHH
Confidence            9964 44433

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.98  E-value=1.6e-09  Score=115.64  Aligned_cols=97  Identities=25%  Similarity=0.317  Sum_probs=72.4

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---------
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---------  202 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---------  202 (390)
                      ..|........++++.|.+..++.+.+.+..             ..+.++||+||||||||++++++|..+         
T Consensus       168 ~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l  234 (758)
T 3pxi_A          168 RDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL  234 (758)
T ss_dssp             CBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred             HHHHHHHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhh
Confidence            4555555667788999999999988877643             356679999999999999999999886         


Q ss_pred             -ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEc
Q psy11689        203 -VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFID  244 (390)
Q Consensus       203 -~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lD  244 (390)
                       +.+++.+++   ...|.|+.+..++.+|..+....|+|||||
T Consensus       235 ~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD  274 (758)
T 3pxi_A          235 RDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID  274 (758)
T ss_dssp             SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred             cCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc
Confidence             556666655   345667777889999999999999999999

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=98.92  E-value=3.7e-10  Score=114.64  Aligned_cols=203  Identities=12%  Similarity=0.070  Sum_probs=103.7

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc--chhccc-----cccccCc
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAAS-----AAQLYSP  217 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~-----~~~~~~~  217 (390)
                      .+.|.+.+++.+...+.               .+.++||+||||||||+||+++|..++.  ++..+.     ..++++.
T Consensus        23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~   87 (500)
T 3nbx_X           23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP   87 (500)
T ss_dssp             TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred             hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence            46677777766554442               3468999999999999999999988742  222222     2333333


Q ss_pred             chhhHHHHHHHHHHHHHhc---CCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcE---EEeccCHHHHHhcCc-hh----
Q psy11689        218 YVGEAEQNVTQLFHRARLA---APAILFIDEIERTYNCEYREQTADNAKKPRIPR---TNGGYREQTADTANK-PR----  286 (390)
Q Consensus       218 ~~g~~~~~i~~~f~~A~~~---~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~---i~~~~~~~~i~~t~~-~~----  286 (390)
                      +.+..... ...|..+...   .++|+||||++.+ ++...+.....+....++.   .......+++.+||. |+    
T Consensus        88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~  165 (500)
T 3nbx_X           88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSS  165 (500)
T ss_dssp             BC-----------CBCCTTSGGGCSEEEEESGGGC-CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCT
T ss_pred             ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCcccc
Confidence            32221111 1122222111   4789999999874 4444444445443321110   011111233555554 22    


Q ss_pred             ---HHHhHH--HhhhhcCCchhHHHhhcccccccCCCC------------------CCCC-----cchhhhc--------
Q psy11689        287 ---IQRTKR--EYREQTADTAHKTRISRTNRGYREKTA------------------DTAN-----KPRIPRT--------  330 (390)
Q Consensus       287 ---~~r~~~--~~l~~l~~~~~r~~I~~~n~~~r~~~~------------------~~vd-----l~~la~~--------  330 (390)
                         +.+.+.  ..++.++...++..|+...........                  ..+.     .+.+++.        
T Consensus       166 ~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r  245 (500)
T 3nbx_X          166 LEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLP  245 (500)
T ss_dssp             THHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCC
Confidence               221110  001111122344445422211100000                  0111     1222221        


Q ss_pred             -CCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhh
Q psy11689        331 -NRGYREYSAQNANTANKPRIQRTKREYREQTADTAN  366 (390)
Q Consensus       331 -t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~  366 (390)
                       ..|.|  .+.+..+++.|.-.|..+++..++.+|+.
T Consensus       246 ~~~~iS--~R~~~~llr~A~A~A~l~gr~~Vt~eDv~  280 (500)
T 3nbx_X          246 DAPYVS--DRRWKKAIRLLQASAFFSGRSAVAPVDLI  280 (500)
T ss_dssp             SSCCCC--HHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred             CCCccc--hhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence             35788  89999999999999999999999999988

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.91  E-value=3e-09  Score=101.33  Aligned_cols=62  Identities=18%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+..+++|...+|.|+++||+.+.+|......+.+.+..  ...+.+.++|++..+..+++
T Consensus       194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~  257 (306)
T 3nh6_A          194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQ  257 (306)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCE
Confidence            345567888999999999999999999999988877766543  36788999999888776655

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.90  E-value=1.4e-09  Score=91.96  Aligned_cols=85  Identities=15%  Similarity=0.147  Sum_probs=59.0

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhh
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGE  221 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~  221 (390)
                      ++.|-....+.+.+.+...           ...+..+||+||||||||++|++++..+   +.+++ +++..+...    
T Consensus         2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----   65 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----   65 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred             CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence            4556666666666655431           1355679999999999999999999886   67888 888765543    


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                        ......|..+   ...+|||||++.+-
T Consensus        66 --~~~~~~~~~a---~~g~l~ldei~~l~   89 (145)
T 3n70_A           66 --PQLNDFIALA---QGGTLVLSHPEHLT   89 (145)
T ss_dssp             --SCHHHHHHHH---TTSCEEEECGGGSC
T ss_pred             --hhhhcHHHHc---CCcEEEEcChHHCC
Confidence              1223344444   45799999999874

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.89  E-value=7.2e-09  Score=95.06  Aligned_cols=56  Identities=18%  Similarity=0.076  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTA  279 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i  279 (390)
                      +..+..+++|...+|.++++||+.+.+|........+.+...    +.+.+.++|.+...
T Consensus       150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  209 (235)
T 3tif_A          150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA  209 (235)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH
Confidence            444568889999999999999999999999888777665432    78899999987643

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.89  E-value=2.1e-09  Score=101.82  Aligned_cols=103  Identities=21%  Similarity=0.256  Sum_probs=67.3

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh-----ccchh
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS-----VYRVL  207 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~-----~~~~~  207 (390)
                      .|..++....++++.|.+..++.+...+..             ....+++|+||||+|||+++++++..+     +.+++
T Consensus         6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~   72 (319)
T 2chq_A            6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI   72 (319)
T ss_dssp             CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred             cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence            566667777777999999999888776542             122349999999999999999999885     34455


Q ss_pred             ccccccccCcchhhHHHHHHHHHHHH-H-hcCCeEEEEcCCCCCC
Q psy11689        208 AASAAQLYSPYVGEAEQNVTQLFHRA-R-LAAPAILFIDEIERTY  250 (390)
Q Consensus       208 ~i~~~~~~~~~~g~~~~~i~~~f~~A-~-~~~p~il~lDEid~~l  250 (390)
                      .+++++..+  .......+....... . ...+.|++|||++.+.
T Consensus        73 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~  115 (319)
T 2chq_A           73 EMNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT  115 (319)
T ss_dssp             EEETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC
T ss_pred             EEeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC
Confidence            566554321  111111122111010 1 1457899999999874

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.88  E-value=7.6e-09  Score=100.65  Aligned_cols=61  Identities=11%  Similarity=0.044  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.+|++||+.+.+|+.......+.+..    .+.+.+.++|.+..+.. |++
T Consensus       168 qkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDr  233 (366)
T 3tui_C          168 QKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDC  233 (366)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence            44456788999999999999999999999988877765543    37899999999987764 665

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=98.88  E-value=3.3e-09  Score=101.84  Aligned_cols=52  Identities=29%  Similarity=0.127  Sum_probs=42.9

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA  211 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~  211 (390)
                      ++.|.+..++.+...+..               +.++||+||||||||+|++++|..++.+++.+.+
T Consensus        28 ~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~   79 (331)
T 2r44_A           28 VVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF   79 (331)
T ss_dssp             TCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             ceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence            788888888777665532               3589999999999999999999999888777665

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.87  E-value=5.6e-09  Score=101.35  Aligned_cols=207  Identities=10%  Similarity=0.049  Sum_probs=106.5

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhc--ccc
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA--ASA  211 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~--i~~  211 (390)
                      |..++....++++.|.+..++.+...+...            ..+..++|+||+|+|||++++++++..+.....  ..+
T Consensus         6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~   73 (373)
T 1jr3_A            6 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC   73 (373)
T ss_dssp             HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred             HHHhhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence            444555666679999999999988877531            234578999999999999999999887542110  000


Q ss_pred             --------------ccccCcch--hhHHHHHHHHHHHHH----hcCCeEEEEcCCCCCCChhhHHHHHHHhhcCC--CcE
Q psy11689        212 --------------AQLYSPYV--GEAEQNVTQLFHRAR----LAAPAILFIDEIERTYNCEYREQTADNAKKPR--IPR  269 (390)
Q Consensus       212 --------------~~~~~~~~--g~~~~~i~~~f~~A~----~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~--~~~  269 (390)
                                    .++..-..  ......++.++..+.    ...+.||+|||++.+- ....+.....+....  ...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-~~~~~~Ll~~le~~~~~~~~  152 (373)
T 1jr3_A           74 GVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-RHSFNALLKTLEEPPEHVKF  152 (373)
T ss_dssp             SSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-HHHHHHHHHHHHSCCSSEEE
T ss_pred             cccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-HHHHHHHHHHHhcCCCceEE
Confidence                          01100000  011123455555543    2347899999999864 333444444444431  222


Q ss_pred             EEeccCHHHHHhcCchhHHHhHHHh--hhhcC--CchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHH
Q psy11689        270 TNGGYREQTADTANKPRIQRTKREY--REQTA--DTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTA  345 (390)
Q Consensus       270 i~~~~~~~~i~~t~~~~~~r~~~~~--l~~l~--~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~  345 (390)
                      +..++..        ..+..++...  ...+.  +..+...++...........++..+..+++.+.|.   ..++.+++
T Consensus       153 Il~~~~~--------~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~---~r~~~~~l  221 (373)
T 1jr3_A          153 LLATTDP--------QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS---LRDALSLT  221 (373)
T ss_dssp             EEEESCG--------GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSC---HHHHHHHH
T ss_pred             EEEeCCh--------HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCC---HHHHHHHH
Confidence            2233221        1111111111  01111  22233222211111111111222245677888774   67788888


Q ss_pred             HHHHHHHHHccccccChhhhhhh
Q psy11689        346 NKPRIQRTKREYREQTADTANKP  368 (390)
Q Consensus       346 ~~A~~~a~~r~~~~i~~~~~~~~  368 (390)
                      ..+...+    ...|+.+++.+.
T Consensus       222 ~~~~~~~----~~~i~~~~v~~~  240 (373)
T 1jr3_A          222 DQAIASG----DGQVSTQAVSAM  240 (373)
T ss_dssp             HHHHHHT----TTCBCHHHHHHH
T ss_pred             HHHHHhc----CCcccHHHHHHH
Confidence            7775442    245777666544

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.87  E-value=6e-10  Score=94.11  Aligned_cols=85  Identities=14%  Similarity=0.249  Sum_probs=60.3

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ  224 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~  224 (390)
                      ++.|.....+.+.+.+...       .    ..+..++|+||||||||++|++++..+. +++.+++..+...+      
T Consensus         5 ~~iG~s~~~~~l~~~~~~~-------~----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------   66 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAA-------A----KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------   66 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHH-------H----TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred             CceeCCHHHHHHHHHHHHH-------h----CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence            4667777777777766532       1    2456799999999999999999998887 88888887653322      


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~  251 (390)
                       ....|..+   ...+|||||++.+-.
T Consensus        67 -~~~~~~~a---~~~~l~lDei~~l~~   89 (143)
T 3co5_A           67 -PMELLQKA---EGGVLYVGDIAQYSR   89 (143)
T ss_dssp             -HHHHHHHT---TTSEEEEEECTTCCH
T ss_pred             -hhhHHHhC---CCCeEEEeChHHCCH
Confidence             33445543   467999999998743

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.86  E-value=1e-08  Score=100.31  Aligned_cols=113  Identities=21%  Similarity=0.266  Sum_probs=78.1

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------------------cchh----------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------------------YRVL----------------------  207 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------------------~~~~----------------------  207 (390)
                      ++.+.+++.+.|.||+|||||||+++||....                      +.++                      
T Consensus        23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~  102 (381)
T 3rlf_A           23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL  102 (381)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHH
T ss_pred             EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHH
Confidence            56678999999999999999999999992210                      0000                      


Q ss_pred             -----------------ccccccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----
Q psy11689        208 -----------------AASAAQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----  264 (390)
Q Consensus       208 -----------------~i~~~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----  264 (390)
                                       .+....+...+..+  ..+..+..+++|...+|.++++||+.+.+|..........+..    
T Consensus       103 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~  182 (381)
T 3rlf_A          103 AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR  182 (381)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh
Confidence                             00001111111111  2345556888999999999999999999999887776655533    


Q ss_pred             CCCcEEEeccCHHHHHh-cCc
Q psy11689        265 PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       265 ~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+.+.+.++|....+.. +++
T Consensus       183 ~g~tii~vTHd~~ea~~~aDr  203 (381)
T 3rlf_A          183 LGRTMIYVTHDQVEAMTLADK  203 (381)
T ss_dssp             HCCEEEEECSCHHHHHHHCSE
T ss_pred             CCCEEEEEECCHHHHHHhCCE
Confidence            37899999999876554 554

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=98.86  E-value=2.7e-09  Score=82.28  Aligned_cols=74  Identities=8%  Similarity=0.054  Sum_probs=59.7

Q ss_pred             hcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHh
Q psy11689        297 QTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRI  373 (390)
Q Consensus       297 ~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~  373 (390)
                      ..|+...|..|+...... ....+++|+..||++|+|||  ||||+++|++|++.|+++....|+++||..++-+..
T Consensus         9 ~~Pd~~~R~~IL~~~l~~-~~l~~dvdl~~LA~~T~G~S--GADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~   82 (86)
T 2krk_A            9 SHPNEEARLDILKIHSRK-MNLTRGINLRKIAELMPGAS--GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM   82 (86)
T ss_dssp             CCCCHHHHHHHHHHHTTT-SEECTTCCCHHHHHTCSSCC--HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHcC-CCCCcccCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            356677787775332221 12256899999999999999  999999999999999999999999999999986653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.86  E-value=2.2e-09  Score=103.75  Aligned_cols=130  Identities=13%  Similarity=0.123  Sum_probs=76.5

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHH-hccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch---hc
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTV-EWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV---LA  208 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~---~~  208 (390)
                      .|..++....++++.|.+.+.+.+...+ ..             ....+++|+||||+||||++++++++...+-   +.
T Consensus         3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~   69 (354)
T 1sxj_E            3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLK   69 (354)
T ss_dssp             -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred             cchhccCCCCHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence            4777788888889999999888877665 21             1223399999999999999999998642110   00


Q ss_pred             cc------------------cc---cccCcchhh-HHHHHHHHHHHHH--------------hcCCeEEEEcCCCCCCCh
Q psy11689        209 AS------------------AA---QLYSPYVGE-AEQNVTQLFHRAR--------------LAAPAILFIDEIERTYNC  252 (390)
Q Consensus       209 i~------------------~~---~~~~~~~g~-~~~~i~~~f~~A~--------------~~~p~il~lDEid~~l~~  252 (390)
                      ++                  ..   .+.....+. ....++..+..+.              ..+|.|++|||++. ++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~-L~~  148 (354)
T 1sxj_E           70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS-LTK  148 (354)
T ss_dssp             ----------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTS-SCH
T ss_pred             ecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc-cCH
Confidence            00                  00   000000010 1112334443332              33688999999999 777


Q ss_pred             hhHHHHHHHhhcC--CCcEEEeccCH
Q psy11689        253 EYREQTADNAKKP--RIPRTNGGYRE  276 (390)
Q Consensus       253 r~~~~~~~~~~~~--~~~~i~~~~~~  276 (390)
                      ...+.....+...  ....+..+|.+
T Consensus       149 ~~~~~L~~~le~~~~~~~~Il~t~~~  174 (354)
T 1sxj_E          149 DAQAALRRTMEKYSKNIRLIMVCDSM  174 (354)
T ss_dssp             HHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred             HHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence            7666666655443  34455556553

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B

Probab=98.86  E-value=1.9e-09  Score=82.34  Aligned_cols=65  Identities=8%  Similarity=0.007  Sum_probs=50.5

Q ss_pred             CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCccccccCCCc
Q psy11689        319 ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLSQRNRSSPK  385 (390)
Q Consensus       319 ~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  385 (390)
                      .+++|+..||+.|+|||  ||||+++|++|++.|++++...|+++||..+.-....|....+.+.+|
T Consensus        17 ~~~vdl~~lA~~t~G~S--GADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~~y   81 (82)
T 2dzn_B           17 APEADLDSLIIRNDSLS--GAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFY   81 (82)
T ss_dssp             CTTCCSTTTTTSSCCCC--HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC-----------
T ss_pred             CCcCCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHHhh
Confidence            56799999999999999  999999999999999999999999999999987776555444445444

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=98.85  E-value=2.5e-09  Score=80.79  Aligned_cols=73  Identities=8%  Similarity=0.077  Sum_probs=59.5

Q ss_pred             cCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHh
Q psy11689        298 TADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRI  373 (390)
Q Consensus       298 l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~  373 (390)
                      +|+...|..|+..... .....+++|+..||+.|+|||  ||||+++|++|++.|++++...|+++||..++-+.+
T Consensus         2 lPd~~~R~~Il~~~l~-~~~~~~~~dl~~la~~t~G~S--GADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~   74 (78)
T 3kw6_A            2 PPNEEARLDILKIHSR-KMNLTRGINLRKIAELMPGAS--GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM   74 (78)
T ss_dssp             CCCHHHHHHHHHHHHT-TSEECTTCCHHHHHHTCTTCC--HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhc-CCCCCCccCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            4667777777643221 122256899999999999999  999999999999999999999999999999986654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.84  E-value=1.4e-08  Score=98.61  Aligned_cols=61  Identities=16%  Similarity=0.190  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh----hcCCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA----KKPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~----~~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|..........+    ...+.+.+.++|....+.. +++
T Consensus       143 q~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDr  208 (359)
T 3fvq_A          143 QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADR  208 (359)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCE
Confidence            445568889999999999999999999998877765433    3457899999999876654 554

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.83  E-value=5e-09  Score=100.27  Aligned_cols=75  Identities=11%  Similarity=0.105  Sum_probs=56.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhccccccccCcc----------------hhhHHHHHHHH
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAASAAQLYSPY----------------VGEAEQNVTQL  229 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~i~~~~~~~~~----------------~g~~~~~i~~~  229 (390)
                      ..+.+++|+||||||||+++++++.++          .+.++.++|..+...+                .+...+.+...
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~  122 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY  122 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence            578899999999999999999999887          3566777775543221                12234567777


Q ss_pred             HHHH--HhcCCeEEEEcCCCCCC
Q psy11689        230 FHRA--RLAAPAILFIDEIERTY  250 (390)
Q Consensus       230 f~~A--~~~~p~il~lDEid~~l  250 (390)
                      |...  ....+.|++|||+|.+.
T Consensus       123 f~~~~~~~~~~~ii~lDE~d~l~  145 (318)
T 3te6_A          123 ITNVPKAKKRKTLILIQNPENLL  145 (318)
T ss_dssp             HHHSCGGGSCEEEEEEECCSSSC
T ss_pred             HHHhhhccCCceEEEEecHHHhh
Confidence            8764  45678999999999998

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.79  E-value=1.7e-08  Score=91.87  Aligned_cols=52  Identities=19%  Similarity=0.123  Sum_probs=41.8

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTA  279 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i  279 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|....+
T Consensus       149 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~  203 (224)
T 2pcj_A          149 VAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA  203 (224)
T ss_dssp             HHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence            4666888899999999999999999888777665532   367889999986554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.79  E-value=1.8e-08  Score=94.20  Aligned_cols=61  Identities=15%  Similarity=0.095  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhc------CCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLA------APAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~------~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...      +|.+|++||+.+.+|........+.+...    ..+.+.++|.+..+.. |++
T Consensus       146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~  217 (266)
T 4g1u_C          146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADR  217 (266)
T ss_dssp             HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCE
Confidence            4445678888888      99999999999999999888776655432    4688999999876653 554

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.79  E-value=2.9e-08  Score=96.56  Aligned_cols=61  Identities=21%  Similarity=0.194  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|..........+..    .+.+.+.++|....+.. +++
T Consensus       138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adr  203 (359)
T 2yyz_A          138 QQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASR  203 (359)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence            44456788999999999999999999999888777665533    37889999999876543 444

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.79  E-value=2.6e-08  Score=96.74  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|..........+..    .+.+.+.++|....+.. +++
T Consensus       150 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr  215 (355)
T 1z47_A          150 QQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADR  215 (355)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCE
Confidence            34445778999999999999999999999888777665533    37889999999876554 444

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.78  E-value=1.4e-08  Score=95.27  Aligned_cols=61  Identities=10%  Similarity=-0.010  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.+|++||+.+.+|+.......+.+..    .+.+.+.++|.+..+.. |++
T Consensus       148 qkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~dr  213 (275)
T 3gfo_A          148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDN  213 (275)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSE
T ss_pred             HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCE
Confidence            33345777899999999999999999999988777665532    36788999998765543 443

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.77  E-value=3e-08  Score=92.09  Aligned_cols=55  Identities=13%  Similarity=0.113  Sum_probs=43.4

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+..
T Consensus       154 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~  211 (256)
T 1vpl_A          154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEF  211 (256)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTT
T ss_pred             HHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence            34677889999999999999999999988777665533   36788889998765544

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.77  E-value=2.8e-08  Score=96.71  Aligned_cols=61  Identities=20%  Similarity=0.201  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|..........+..    .+.+.+.++|....+.. +++
T Consensus       138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr  203 (362)
T 2it1_A          138 QQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADR  203 (362)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence            34445778999999999999999999999888777665533    26889999999866543 444

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=98.75  E-value=5.3e-09  Score=100.73  Aligned_cols=33  Identities=6%  Similarity=-0.072  Sum_probs=29.3

Q ss_pred             cHHHHHHHHHHHHHHHHccccccChhhhhhhHH
Q psy11689        338 SAQNANTANKPRIQRTKREYREQTADTANKPRI  370 (390)
Q Consensus       338 gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~  370 (390)
                      ...+.+++..|...|..+++..|+.+++.++.-
T Consensus       288 ~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~  320 (350)
T 1g8p_A          288 LRGELTLLRSARALAALEGATAVGRDHLKRVAT  320 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence            688999999999999888888999999988764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.73  E-value=1.7e-08  Score=93.33  Aligned_cols=60  Identities=23%  Similarity=0.181  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcC
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~  283 (390)
                      +..+..+++|...+|.++++||+.+.+|........+.+..  .+.+.+.++|.+..+..++
T Consensus       150 q~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d  211 (247)
T 2ff7_A          150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNAD  211 (247)
T ss_dssp             HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSS
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCC
Confidence            44556788899999999999999999999988877665533  3678889999865544333

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.73  E-value=9.5e-10  Score=103.30  Aligned_cols=79  Identities=22%  Similarity=0.243  Sum_probs=66.7

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc-------ccCCcccchHHHHH
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF-------TKLNEEVELSENVQ   80 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~-------~~~~~~v~l~~~la   80 (390)
                      ..++++++||+++.+|+|++|              ||||+ .|.+|. +.++|++|++.       ..+..++++ +.+|
T Consensus       145 ~~~i~ia~tn~p~~LD~al~r--------------~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~-~~la  209 (274)
T 2x8a_A          145 QQVFIMAATNRPDIIDPAILR--------------PGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNL-EAIA  209 (274)
T ss_dssp             TCEEEEEEESCGGGSCHHHHS--------------TTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCH-HHHH
T ss_pred             CCEEEEeecCChhhCCHhhcC--------------cccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCH-HHHH
Confidence            468999999999999999999              99999 666666 36788899875       235678999 8899


Q ss_pred             Hhh--cCCccccccccccccchhhh
Q psy11689         81 REE--EGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        81 ~~t--~G~~g~~l~~~~~ea~~~~~  103 (390)
                      ..|  +||+|+||..+|.++++.+.
T Consensus       210 ~~~~~~g~sgadl~~l~~~a~~~a~  234 (274)
T 2x8a_A          210 GDLRCDCYTGADLSALVREASICAL  234 (274)
T ss_dssp             TCSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCcCHHHHHHHHHHHHHHHH
Confidence            975  59999999999999988644

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.73  E-value=4.2e-08  Score=95.03  Aligned_cols=113  Identities=17%  Similarity=0.219  Sum_probs=76.7

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------------------cchhc---------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------------------YRVLA---------------------  208 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------------------~~~~~---------------------  208 (390)
                      ++.+.+++.+.|.||+|||||||+++||....                      +.++.                     
T Consensus        20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~   99 (348)
T 3d31_A           20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM   99 (348)
T ss_dssp             EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999999992210                      00000                     


Q ss_pred             ---------------cccccccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCC
Q psy11689        209 ---------------ASAAQLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRI  267 (390)
Q Consensus       209 ---------------i~~~~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~  267 (390)
                                     +...++...+..  ++.+..+..+++|...+|.++++||+.+.+|..........+..    .+.
T Consensus       100 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~  179 (348)
T 3d31_A          100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL  179 (348)
T ss_dssp             HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCC
Confidence                           000001111111  12344556888999999999999999999999888777665533    378


Q ss_pred             cEEEeccCHHHHHh-cCc
Q psy11689        268 PRTNGGYREQTADT-ANK  284 (390)
Q Consensus       268 ~~i~~~~~~~~i~~-t~~  284 (390)
                      +.+.++|....+.. +++
T Consensus       180 tii~vTHd~~~~~~~adr  197 (348)
T 3d31_A          180 TVLHITHDQTEARIMADR  197 (348)
T ss_dssp             EEEEEESCHHHHHHHCSE
T ss_pred             EEEEEeCCHHHHHHhCCE
Confidence            99999999765543 443

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*

Probab=98.73  E-value=9.7e-09  Score=78.50  Aligned_cols=57  Identities=7%  Similarity=-0.035  Sum_probs=50.4

Q ss_pred             CCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCcc
Q psy11689        319 ADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLS  377 (390)
Q Consensus       319 ~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~  377 (390)
                      .+++|+..||+.|+|||  ||||+++|++|++.|+++....|+++||..+.-+..-+.+
T Consensus        20 ~~~vdl~~la~~t~G~S--GADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~   76 (83)
T 3aji_B           20 SEEVDLEDYVARPDKIS--GADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE   76 (83)
T ss_dssp             CTTCCTHHHHTSSCCCC--HHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred             CcccCHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence            46799999999999999  9999999999999999999899999999999877766655

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.72  E-value=3.2e-08  Score=96.65  Aligned_cols=57  Identities=19%  Similarity=0.228  Sum_probs=45.4

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      ..+++|...+|.++++||+.+.+|..........+..    .+.+.+.++|....+.. +++
T Consensus       150 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr  211 (372)
T 1v43_A          150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR  211 (372)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            4777899999999999999999999888777665533    26889999999876543 444

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.72  E-value=2.6e-08  Score=94.31  Aligned_cols=111  Identities=18%  Similarity=0.168  Sum_probs=68.5

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcch--
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYV--  219 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~--  219 (390)
                      ++.|...+++.+...+.......   . -...+...++|+||||||||++|+++|..+   +.+++.+++..+.....  
T Consensus        18 ~i~G~~~~~~~l~~~i~~~~~~~---~-~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T 4fcw_A           18 RVVGQDEAIRAVADAIRRARAGL---K-DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS   93 (311)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTC---S-CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCC---C-CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence            67888888888888776421110   0 011234579999999999999999999887   45677777765543211  


Q ss_pred             ----------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        220 ----------GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       220 ----------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                                +...  ...+.........+++||||++.+ +....+.....+
T Consensus        94 ~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l-~~~~~~~Ll~~l  143 (311)
T 4fcw_A           94 RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKA-HPDVFNILLQML  143 (311)
T ss_dssp             HHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGS-CHHHHHHHHHHH
T ss_pred             HhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhc-CHHHHHHHHHHH
Confidence                      1100  011222333445689999999986 333344444433

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.72  E-value=7.2e-08  Score=90.30  Aligned_cols=60  Identities=13%  Similarity=0.088  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHhcC
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADTAN  283 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~t~  283 (390)
                      +..+..+++|...+|.++++||+.+.+|........+.+...    +.+.+.++|.+..+..++
T Consensus       161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d  224 (271)
T 2ixe_A          161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAH  224 (271)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCS
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCC
Confidence            445567889999999999999999999999988887766443    578889999876655444

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.71  E-value=2.4e-08  Score=94.65  Aligned_cols=101  Identities=18%  Similarity=0.197  Sum_probs=69.2

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----cch
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----YRV  206 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----~~~  206 (390)
                      ..|...+....++++.|.+..++.+...+..             ....+++|+||||+|||+++++++....     .++
T Consensus         9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~   75 (323)
T 1sxj_B            9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGV   75 (323)
T ss_dssp             CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred             CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCE
Confidence            3566666666677999999999998887753             1223399999999999999999998853     334


Q ss_pred             hccccccccCcchhhHHHHHHHHHHHHH-------hcCCeEEEEcCCCCCCC
Q psy11689        207 LAASAAQLYSPYVGEAEQNVTQLFHRAR-------LAAPAILFIDEIERTYN  251 (390)
Q Consensus       207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~-------~~~p~il~lDEid~~l~  251 (390)
                      +.+++++..      ....++..+....       ...+.||+|||++.+..
T Consensus        76 ~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~  121 (323)
T 1sxj_B           76 LELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA  121 (323)
T ss_dssp             EEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH
T ss_pred             EEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH
Confidence            455544321      1233444444433       23488999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.71  E-value=5.2e-08  Score=89.62  Aligned_cols=55  Identities=15%  Similarity=0.111  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHH
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTAD  280 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~  280 (390)
                      .+..+++|...+|.++++||+.+.+|........+.+..    .+.+.+..+|.+..+.
T Consensus       133 qRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~  191 (240)
T 2onk_A          133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA  191 (240)
T ss_dssp             HHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence            334777889999999999999999999988877666543    2678899999875543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.71  E-value=3.7e-08  Score=93.51  Aligned_cols=102  Identities=20%  Similarity=0.254  Sum_probs=68.5

Q ss_pred             ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----c
Q psy11689        131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----R  205 (390)
Q Consensus       131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----~  205 (390)
                      ...|...+....++++.|.+..++.+...+..             ....+++|+||||+|||+++++++.....     .
T Consensus        12 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~   78 (327)
T 1iqp_A           12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHN   78 (327)
T ss_dssp             TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred             CCchhhccCCCCHHHhhCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence            45677778888888999999999998887753             12335999999999999999999988642     2


Q ss_pred             hhccccccccCcchhhHHHHHHHHHHHH-H-----hcCCeEEEEcCCCCCCC
Q psy11689        206 VLAASAAQLYSPYVGEAEQNVTQLFHRA-R-----LAAPAILFIDEIERTYN  251 (390)
Q Consensus       206 ~~~i~~~~~~~~~~g~~~~~i~~~f~~A-~-----~~~p~il~lDEid~~l~  251 (390)
                      ++.+++++..      ....++..+... .     ...+.+|++||++.+..
T Consensus        79 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~  124 (327)
T 1iqp_A           79 FLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ  124 (327)
T ss_dssp             EEEEETTCHH------HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH
T ss_pred             eEEeeccccC------chHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH
Confidence            3334433211      111112222111 1     14578999999998743

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.70  E-value=6.9e-08  Score=89.49  Aligned_cols=109  Identities=15%  Similarity=0.143  Sum_probs=73.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc-----------cchh--------ccccc--------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV-----------YRVL--------AASAA--------------------  212 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~-----------~~~~--------~i~~~--------------------  212 (390)
                      ++.+.++..+.|.||+|+|||||+++++....           +.++        ..+..                    
T Consensus        25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~  104 (253)
T 2nq2_C           25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH  104 (253)
T ss_dssp             EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHH
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHH
Confidence            45678899999999999999999999994321           0000        00000                    


Q ss_pred             ---------------cccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---C-CCcEEE
Q psy11689        213 ---------------QLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---P-RIPRTN  271 (390)
Q Consensus       213 ---------------~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~-~~~~i~  271 (390)
                                     +.......  ...+..+..+++|...+|.++++||+.+.+|........+.+..   . +.+.+.
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~  184 (253)
T 2nq2_C          105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF  184 (253)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred             HHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence                           00000000  12233445777899999999999999999999988777665533   2 678899


Q ss_pred             eccCHHHHH
Q psy11689        272 GGYREQTAD  280 (390)
Q Consensus       272 ~~~~~~~i~  280 (390)
                      .+|.+..+.
T Consensus       185 vtHd~~~~~  193 (253)
T 2nq2_C          185 TTHQPNQVV  193 (253)
T ss_dssp             EESCHHHHH
T ss_pred             EecCHHHHH
Confidence            999876653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.70  E-value=1.6e-08  Score=87.93  Aligned_cols=109  Identities=11%  Similarity=0.140  Sum_probs=68.8

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHH------------HHHhhcc----chh----------------cccccccc-Ccch
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRT------------LAAHSVY----RVL----------------AASAAQLY-SPYV  219 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~a------------ia~~~~~----~~~----------------~i~~~~~~-~~~~  219 (390)
                      +.+.++..+.|.||||||||||+++            +......    ..+                ........ ..+.
T Consensus         4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   83 (171)
T 4gp7_A            4 LTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNV   83 (171)
T ss_dssp             EEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence            4567899999999999999999994            3321100    000                00000000 1112


Q ss_pred             hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH----------------HHHHHHh---hcCCCcEEEeccCHHHHH
Q psy11689        220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR----------------EQTADNA---KKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~----------------~~~~~~~---~~~~~~~i~~~~~~~~i~  280 (390)
                      ....+..+..+++|....|.++++||+.+.++.+..                ....+.+   ...+.+.+..+|.+..+.
T Consensus        84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~  163 (171)
T 4gp7_A           84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVE  163 (171)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhh
Confidence            233345556788999999999999999999998733                4444432   223788888999876554


Q ss_pred             h
Q psy11689        281 T  281 (390)
Q Consensus       281 ~  281 (390)
                      .
T Consensus       164 ~  164 (171)
T 4gp7_A          164 E  164 (171)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.70  E-value=8.1e-08  Score=84.20  Aligned_cols=95  Identities=16%  Similarity=0.242  Sum_probs=64.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhccccccc---------------------------------cCcchh--hHHH
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQL---------------------------------YSPYVG--EAEQ  224 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~---------------------------------~~~~~g--~~~~  224 (390)
                      .+.|.||+|+|||||+++++...+..+......+.                                 ...+..  +..+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~   81 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE   81 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence            57899999999999999999887633221111100                                 011111  1234


Q ss_pred             HHHHHHHHH-----HhcCCeEEEEcC--CCCCCChhhHHHHHHHhhcCCCcEEEecc
Q psy11689        225 NVTQLFHRA-----RLAAPAILFIDE--IERTYNCEYREQTADNAKKPRIPRTNGGY  274 (390)
Q Consensus       225 ~i~~~f~~A-----~~~~p~il~lDE--id~~l~~r~~~~~~~~~~~~~~~~i~~~~  274 (390)
                      ..+..+.+|     ...+|.++++||  +...++..........+.....+.+..+|
T Consensus        82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H  138 (178)
T 1ye8_A           82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP  138 (178)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred             HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence            455566675     789999999999  88999988888777777665555666665

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.69  E-value=2.5e-08  Score=91.88  Aligned_cols=61  Identities=23%  Similarity=0.174  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|........+.+..  .+.+.+..+|++..+..+++
T Consensus       144 q~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~  206 (243)
T 1mv5_A          144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADK  206 (243)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSE
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCE
Confidence            44566888999999999999999999998876655554432  36788999998765544443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.69  E-value=1.7e-08  Score=113.62  Aligned_cols=63  Identities=19%  Similarity=0.162  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.|+.+-.+++|...+|.|++|||+++.+|..++..+.+.+...  ..|.+.++||+.++..+++
T Consensus      1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~ 1284 (1321)
T 4f4c_A         1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADC 1284 (1321)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCE
Confidence            34666778999999999999999999999999999998888664  6899999999988887776

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.69  E-value=6e-08  Score=94.18  Aligned_cols=61  Identities=16%  Similarity=0.171  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|...+|.++++||+.+.+|..........+..    .+.+.+.++|....+.. +++
T Consensus       145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adr  210 (353)
T 1oxx_K          145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADR  210 (353)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            33445777899999999999999999999988877665543    37889999999876544 444

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.69  E-value=9.3e-08  Score=89.13  Aligned_cols=54  Identities=17%  Similarity=0.087  Sum_probs=43.2

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+..
T Consensus       168 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~  224 (263)
T 2olj_A          168 VAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFARE  224 (263)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence            4667888999999999999999999888777665532   37888999998766553

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.68  E-value=4.3e-08  Score=101.62  Aligned_cols=62  Identities=19%  Similarity=0.140  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.|+++||+.+.+|..++....+.+..  .+.+.+.++|++..+..+++
T Consensus       483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~  546 (587)
T 3qf4_A          483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADK  546 (587)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCE
Confidence            355667889999999999999999999999998887776643  46889999999877665554

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.68  E-value=3.8e-09  Score=107.09  Aligned_cols=118  Identities=24%  Similarity=0.331  Sum_probs=76.5

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE   83 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t   83 (390)
                      .+++++++||+++.+|+++++              +|||+ .|.+|. +..+|++||..    ..+..++++ +.+|+.|
T Consensus       339 ~~v~vIaaTn~~~~Ld~al~r--------------~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l-~~la~~t  403 (489)
T 3hu3_A          339 AHVIVMAATNRPNSIDPALRR--------------FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL-EQVANET  403 (489)
T ss_dssp             SCEEEEEEESCGGGBCGGGGS--------------TTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH-HHHHHTC
T ss_pred             CceEEEEecCCccccCHHHhC--------------CCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH-HHHHHHc
Confidence            479999999999888888877              99999 666666 47888898876    456678888 8899999


Q ss_pred             cCCccccccccccccchhhhcCCCCC-C-CCCC----------C----------CchhhHhhhcccccCccccccccCCC
Q psy11689         84 EGIAGENLQRGGGEEGIELREGGQRN-G-GEGG----------I----------GLNERVQRIGEGREERRDWEGEEEGA  141 (390)
Q Consensus        84 ~G~~g~~l~~~~~ea~~~~~~~~~~~-~-~~~~----------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (390)
                      .||++++|..+|.+++.......... . ....          +          .+.+..+++...+.+++.|+      
T Consensus       404 ~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~------  477 (489)
T 3hu3_A          404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWE------  477 (489)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred             cCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHH------
Confidence            99999999999999887754332111 0 0000          0          12345667788889999999      


Q ss_pred             CCCCccChHH
Q psy11689        142 FVPELGGLKG  151 (390)
Q Consensus       142 ~~~~i~g~~~  151 (390)
                         ||||...
T Consensus       478 ---dig~~~~  484 (489)
T 3hu3_A          478 ---DIGGRSH  484 (489)
T ss_dssp             ----------
T ss_pred             ---HcCCCcc
Confidence               9999643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.67  E-value=4.2e-08  Score=101.99  Aligned_cols=62  Identities=23%  Similarity=0.152  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.|+++||+.+.+|..++....+.+..  .+.+.+.++|++..+..+++
T Consensus       495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~  558 (598)
T 3qf4_B          495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADL  558 (598)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCE
Confidence            456677899999999999999999999999988877665543  37889999999877666554

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.66  E-value=7.3e-08  Score=88.61  Aligned_cols=54  Identities=15%  Similarity=0.018  Sum_probs=42.9

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      +..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+.
T Consensus       147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~  203 (240)
T 1ji0_A          147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL  203 (240)
T ss_dssp             HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence            34677888999999999999999999988777665533   4678899999875443

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.66  E-value=9.9e-08  Score=93.27  Aligned_cols=58  Identities=17%  Similarity=0.200  Sum_probs=45.9

Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        227 TQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       227 ~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+++|...+|.++++||+.+.+|..........+..    .+.+.+.++|....+.. +++
T Consensus       147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr  209 (372)
T 1g29_1          147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDR  209 (372)
T ss_dssp             HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE
T ss_pred             HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCE
Confidence            34777899999999999999999999888777665533    37889999999876554 444

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.66  E-value=9.1e-08  Score=87.32  Aligned_cols=113  Identities=14%  Similarity=0.082  Sum_probs=76.1

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chh---------------cc----------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVL---------------AA----------------  209 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~---------------~i----------------  209 (390)
                      ++.+.+++.+.|.||+|+|||||+++++.....           .++               .+                
T Consensus        28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~  107 (229)
T 2pze_A           28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKAC  107 (229)
T ss_dssp             EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHT
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHh
Confidence            456778999999999999999999999943210           000               00                


Q ss_pred             ccccccCc-------------chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh-hc--CCCcEEEec
Q psy11689        210 SAAQLYSP-------------YVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA-KK--PRIPRTNGG  273 (390)
Q Consensus       210 ~~~~~~~~-------------~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~-~~--~~~~~i~~~  273 (390)
                      ...+....             ..=...+..+..+++|...+|.++++||+.+.+|........+.+ ..  ...+.+..+
T Consensus       108 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vt  187 (229)
T 2pze_A          108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT  187 (229)
T ss_dssp             TCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEEC
T ss_pred             CcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEc
Confidence            00000000             001123455678889999999999999999999999988887753 22  256788899


Q ss_pred             cCHHHHHhcCc
Q psy11689        274 YREQTADTANK  284 (390)
Q Consensus       274 ~~~~~i~~t~~  284 (390)
                      |.+..+..+++
T Consensus       188 H~~~~~~~~d~  198 (229)
T 2pze_A          188 SKMEHLKKADK  198 (229)
T ss_dssp             CCHHHHHHCSE
T ss_pred             CChHHHHhCCE
Confidence            98765544443

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.66  E-value=9.6e-08  Score=87.65  Aligned_cols=108  Identities=17%  Similarity=0.132  Sum_probs=73.9

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chh---------------cc----ccc---------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVL---------------AA----SAA---------  212 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~---------------~i----~~~---------  212 (390)
                      ++.+.++..+.|.||+|+|||||+++++.....           .++               .+    ...         
T Consensus        25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~  104 (237)
T 2cbz_A           25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC  104 (237)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHT
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHH
Confidence            566789999999999999999999999944210           000               00    000         


Q ss_pred             cc--------------cCcch--hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---c--CCCcEEE
Q psy11689        213 QL--------------YSPYV--GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---K--PRIPRTN  271 (390)
Q Consensus       213 ~~--------------~~~~~--g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~--~~~~~i~  271 (390)
                      .+              .....  =...+..+..+++|...+|.++++||+.+.+|........+.+.   .  .+.+.+.
T Consensus       105 ~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tvii  184 (237)
T 2cbz_A          105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL  184 (237)
T ss_dssp             TCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEE
T ss_pred             hhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence            00              00000  01234556788899999999999999999999998888877763   1  3567888


Q ss_pred             eccCHHHH
Q psy11689        272 GGYREQTA  279 (390)
Q Consensus       272 ~~~~~~~i  279 (390)
                      ++|+...+
T Consensus       185 vtH~~~~~  192 (237)
T 2cbz_A          185 VTHSMSYL  192 (237)
T ss_dssp             ECSCSTTG
T ss_pred             EecChHHH
Confidence            88875443

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=98.66  E-value=1.8e-09  Score=112.07  Aligned_cols=37  Identities=11%  Similarity=-0.126  Sum_probs=33.4

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHH
Q psy11689        332 RGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRI  370 (390)
Q Consensus       332 ~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~  370 (390)
                      -+.+  .+.++++++.|.-.|..+++..++.+|+..|+-
T Consensus       549 ~~~s--~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~  585 (595)
T 3f9v_A          549 ILIT--PRQLEALIRISEAYAKMALKAEVTREDAERAIN  585 (595)
T ss_dssp             BCSS--TTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred             cccc--HHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence            4677  899999999999999999999999999999873

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.65  E-value=8.3e-08  Score=99.41  Aligned_cols=61  Identities=18%  Similarity=0.143  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      +..+-.+++|...+|.++++||+.+.+|+.+.....+.+...  +.+.+.++|++..+..+++
T Consensus       485 q~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~  547 (582)
T 3b5x_A          485 QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADE  547 (582)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence            445567889999999999999999999999988877766443  6788999999876655543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.65  E-value=2.8e-08  Score=84.63  Aligned_cols=62  Identities=21%  Similarity=0.237  Sum_probs=47.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      ++..++|+||+|+|||+|+++++...   |...++++..++...               +...+|.+|+|||++.+.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~   99 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE   99 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence            67889999999999999999999876   545556665554432               224578999999999866544

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.65  E-value=4.4e-08  Score=96.31  Aligned_cols=63  Identities=13%  Similarity=0.057  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~~  284 (390)
                      ..+..+..+++|...+|.++++||+.+.+|..........+...  ..+.+..+|+...+..+++
T Consensus       158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDr  222 (390)
T 3gd7_A          158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQ  222 (390)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCE
Confidence            34566778999999999999999999999998888777766543  5788999998765555554

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.64  E-value=5.1e-08  Score=100.91  Aligned_cols=62  Identities=21%  Similarity=0.154  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .++.+-.+++|...+|.++++||+.+.+|+.......+.+..  ...+.+.++|++..+..+++
T Consensus       481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~  544 (578)
T 4a82_A          481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADK  544 (578)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCE
Confidence            355567888999999999999999999999988777665532  35788999999876655544

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.62  E-value=5.9e-08  Score=90.02  Aligned_cols=96  Identities=22%  Similarity=0.233  Sum_probs=58.9

Q ss_pred             CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcc
Q psy11689        142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPY  218 (390)
Q Consensus       142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~  218 (390)
                      +|+++.|.......+.+.+....           ..+..++|+||||||||++|++++..+.   .+++.++++.+....
T Consensus         4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~   72 (265)
T 2bjv_A            4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL   72 (265)
T ss_dssp             ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred             ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence            34578888888777766664321           2356899999999999999999998875   678888887653211


Q ss_pred             h-----hhHHHH-------HHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689        219 V-----GEAEQN-------VTQLFHRARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       219 ~-----g~~~~~-------i~~~f~~A~~~~p~il~lDEid~~l~  251 (390)
                      .     |.....       ....|..   ....+|||||++.+-.
T Consensus        73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~  114 (265)
T 2bjv_A           73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM  114 (265)
T ss_dssp             HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH
T ss_pred             HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH
Confidence            1     000000       0011222   3468999999998754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.61  E-value=9.3e-08  Score=88.97  Aligned_cols=56  Identities=14%  Similarity=0.086  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTA  279 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i  279 (390)
                      +..+..+++|...+|.++++||+.+.+|........+.+..  ...+.+.++|++..+
T Consensus       160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~  217 (260)
T 2ghi_A          160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTI  217 (260)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGS
T ss_pred             HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence            44456788889999999999999999999888776655532  256788888876443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.60  E-value=4.8e-08  Score=110.05  Aligned_cols=63  Identities=21%  Similarity=0.161  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.|+.+-.+++|...+|.|++|||+.+.+|..++....+.+..  .+.|.+.++|++.++..+++
T Consensus       557 GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~  621 (1321)
T 4f4c_A          557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADL  621 (1321)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSE
T ss_pred             HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCE
Confidence            4567778999999999999999999999999988777776654  37899999999998877775

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.60  E-value=7.7e-08  Score=99.66  Aligned_cols=62  Identities=19%  Similarity=0.157  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+-.+++|...+|.++++||+.+.+|........+.+..  .+.+.+.++|++..+..+++
T Consensus       484 Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~  547 (582)
T 3b60_A          484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADE  547 (582)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence            345566888999999999999999999999998877766543  26788999998765544443

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.59  E-value=1.3e-07  Score=88.33  Aligned_cols=57  Identities=14%  Similarity=-0.012  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      +..+..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+.
T Consensus       143 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~  202 (266)
T 2yz2_A          143 EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI  202 (266)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTG
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            33455778889999999999999999999988777665532   3678889999865544

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.58  E-value=2e-07  Score=88.71  Aligned_cols=103  Identities=19%  Similarity=0.230  Sum_probs=64.7

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcch--
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYV--  219 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~--  219 (390)
                      ++.|.....+.+.+.+...           ...+..+||+||||||||++|++++..+   +.+++.++|..+.....  
T Consensus         3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~   71 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES   71 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred             CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence            4667666666666665432           1346789999999999999999999865   57888888876532111  


Q ss_pred             -----------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh
Q psy11689        220 -----------GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK  263 (390)
Q Consensus       220 -----------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~  263 (390)
                                 |... .....|..|   ...+|||||++.+-. .........+.
T Consensus        72 ~lfg~~~g~~tg~~~-~~~g~~~~a---~~g~L~LDEi~~l~~-~~q~~Ll~~l~  121 (304)
T 1ojl_A           72 ELFGHEKGAFTGADK-RREGRFVEA---DGGTLFLDEIGDISP-LMQVRLLRAIQ  121 (304)
T ss_dssp             HHTCCCSSCCC---C-CCCCHHHHH---TTSEEEEESCTTCCH-HHHHHHHHHHH
T ss_pred             HhcCccccccCchhh-hhcCHHHhc---CCCEEEEeccccCCH-HHHHHHHHHHh
Confidence                       1100 111234333   357999999999753 33333444443

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.57  E-value=1.8e-07  Score=86.40  Aligned_cols=109  Identities=10%  Similarity=0.042  Sum_probs=72.7

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc---------ch-----------h-cc-ccccccCc------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY---------RV-----------L-AA-SAAQLYSP------------  217 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~---------~~-----------~-~i-~~~~~~~~------------  217 (390)
                      ++.+.++..+.|.||+|+|||||+++++.....         ++           + ++ ..+.++..            
T Consensus        20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~   99 (249)
T 2qi9_C           20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH   99 (249)
T ss_dssp             EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc
Confidence            456788999999999999999999999854210         00           0 00 00000000            


Q ss_pred             -----------------------chh--hHHHHHHHHHHHHHhcCCe-------EEEEcCCCCCCChhhHHHHHHHhhc-
Q psy11689        218 -----------------------YVG--EAEQNVTQLFHRARLAAPA-------ILFIDEIERTYNCEYREQTADNAKK-  264 (390)
Q Consensus       218 -----------------------~~g--~~~~~i~~~f~~A~~~~p~-------il~lDEid~~l~~r~~~~~~~~~~~-  264 (390)
                                             ...  ...+..+..+++|....|.       ++++||+.+.+|........+.+.. 
T Consensus       100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l  179 (249)
T 2qi9_C          100 DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL  179 (249)
T ss_dssp             STTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHH
Confidence                                   000  0123334567788888899       9999999999999988777665533 


Q ss_pred             --CCCcEEEeccCHHHHH
Q psy11689        265 --PRIPRTNGGYREQTAD  280 (390)
Q Consensus       265 --~~~~~i~~~~~~~~i~  280 (390)
                        .+.+.+..+|.+..+.
T Consensus       180 ~~~g~tviivtHd~~~~~  197 (249)
T 2qi9_C          180 SQQGLAIVMSSHDLNHTL  197 (249)
T ss_dssp             HHTTCEEEEECSCHHHHH
T ss_pred             HhCCCEEEEEeCCHHHHH
Confidence              3678899999876653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.56  E-value=2.2e-07  Score=86.29  Aligned_cols=54  Identities=13%  Similarity=0.014  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHH
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTA  279 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i  279 (390)
                      .+..+++|...+|.++++||+.+.+|........+.+..   .+.+.+..+|.+..+
T Consensus       160 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~  216 (257)
T 1g6h_A          160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV  216 (257)
T ss_dssp             HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred             HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence            334777889999999999999999999988777665533   367888888876443

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.55  E-value=1.5e-07  Score=90.58  Aligned_cols=102  Identities=25%  Similarity=0.303  Sum_probs=67.2

Q ss_pred             ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc-----
Q psy11689        131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR-----  205 (390)
Q Consensus       131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~-----  205 (390)
                      ...|..++....++++.|.+.+++.+...+...             ...+++|+||||||||++++++|+....+     
T Consensus        12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g-------------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~   78 (340)
T 1sxj_C           12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEG-------------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM   78 (340)
T ss_dssp             CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred             CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence            346777777778889999999998888776531             12239999999999999999999886422     


Q ss_pred             hhccccccccCcchhhHHHHHHHHHHHHH------hcCCeEEEEcCCCCCCC
Q psy11689        206 VLAASAAQLYSPYVGEAEQNVTQLFHRAR------LAAPAILFIDEIERTYN  251 (390)
Q Consensus       206 ~~~i~~~~~~~~~~g~~~~~i~~~f~~A~------~~~p~il~lDEid~~l~  251 (390)
                      +..++.++..    +  ...++..+....      ...+.|+++||++.+-.
T Consensus        79 ~~~~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~  124 (340)
T 1sxj_C           79 VLELNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN  124 (340)
T ss_dssp             EEEECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH
T ss_pred             EEEEcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH
Confidence            2233332211    1  122333222221      12478999999998743

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.52  E-value=2.1e-07  Score=86.02  Aligned_cols=56  Identities=9%  Similarity=0.075  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+..+++|...+|.++++||+.+.+|........+.+..   .+.+.+.++|.+..+.
T Consensus       149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~  207 (250)
T 2d2e_A          149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILN  207 (250)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGG
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            3344677888889999999999999999988877665533   3677888899765443

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.50  E-value=3.8e-07  Score=86.20  Aligned_cols=113  Identities=14%  Similarity=0.110  Sum_probs=76.6

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chh-------c------ccc----------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVL-------A------ASA----------------  211 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~-------~------i~~----------------  211 (390)
                      ++.+.++..+.|.||+|+|||||+++++.....           .++       .      +..                
T Consensus        58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~  137 (290)
T 2bbs_A           58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ  137 (290)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhC
Confidence            566789999999999999999999999944210           000       0      000                


Q ss_pred             -ccccCcc-------------hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh-c--CCCcEEEecc
Q psy11689        212 -AQLYSPY-------------VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK-K--PRIPRTNGGY  274 (390)
Q Consensus       212 -~~~~~~~-------------~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~-~--~~~~~i~~~~  274 (390)
                       .+.....             .-...+..+..+++|...+|.++++||+.+.+|........+.+. .  .+.+.+..+|
T Consensus       138 l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtH  217 (290)
T 2bbs_A          138 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS  217 (290)
T ss_dssp             CHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECC
T ss_pred             hHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEec
Confidence             0000000             001234455688899999999999999999999999888877532 2  3578888999


Q ss_pred             CHHHHHhcCc
Q psy11689        275 REQTADTANK  284 (390)
Q Consensus       275 ~~~~i~~t~~  284 (390)
                      .+..+..+++
T Consensus       218 d~~~~~~~d~  227 (290)
T 2bbs_A          218 KMEHLKKADK  227 (290)
T ss_dssp             CHHHHHHSSE
T ss_pred             CHHHHHcCCE
Confidence            8766554443

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.48  E-value=5.7e-08  Score=86.18  Aligned_cols=70  Identities=20%  Similarity=0.319  Sum_probs=44.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcchhhH-HHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYVGEA-EQNVTQLFHRARLAAPAILFIDEIERT  249 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~g~~-~~~i~~~f~~A~~~~p~il~lDEid~~  249 (390)
                      +.+++|+||||||||+|+++++..+   +.+++.+.++++........ .......+....  .+.+|+|||++..
T Consensus        54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~  127 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE  127 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence            3789999999999999999999876   45555566655432221110 000122233222  3569999999664

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.48  E-value=1.7e-07  Score=97.41  Aligned_cols=44  Identities=20%  Similarity=0.361  Sum_probs=37.3

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ++.|...+++.+...+.               .+..++|+||||||||+|++++|..+.
T Consensus        42 ~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           42 QVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             HCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             eEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            88898888877776664               346899999999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.47  E-value=5.4e-07  Score=92.27  Aligned_cols=112  Identities=16%  Similarity=0.121  Sum_probs=78.0

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhhcc------------ch----------------hcc---------------
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY------------RV----------------LAA---------------  209 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~~------------~~----------------~~i---------------  209 (390)
                      +.+.+++.+.|.||+|||||||+++++.....            .+                +..               
T Consensus       289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~  368 (538)
T 3ozx_A          289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE  368 (538)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred             ceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence            34678999999999999999999999943110            00                000               


Q ss_pred             -----ccccccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHH
Q psy11689        210 -----SAAQLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQT  278 (390)
Q Consensus       210 -----~~~~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~  278 (390)
                           ...+.....+.  ++.+..+.++++|...+|.|+++||+.+.+|........+.+..    .+.+.+.++|.+..
T Consensus       369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~  448 (538)
T 3ozx_A          369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI  448 (538)
T ss_dssp             TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence                 00000111111  13456677999999999999999999999999988777665543    46788999999877


Q ss_pred             HHh-cCc
Q psy11689        279 ADT-ANK  284 (390)
Q Consensus       279 i~~-t~~  284 (390)
                      +.. |++
T Consensus       449 ~~~~aDr  455 (538)
T 3ozx_A          449 HDYIADR  455 (538)
T ss_dssp             HHHHCSE
T ss_pred             HHHhCCE
Confidence            664 554

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.46  E-value=1.7e-07  Score=84.73  Aligned_cols=107  Identities=13%  Similarity=0.133  Sum_probs=70.2

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cch------h-cc-cccccc------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRV------L-AA-SAAQLY------------------  215 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~------~-~i-~~~~~~------------------  215 (390)
                      ++.+.++..+.|.||+|+|||||+++++....          .++      + ++ ..+.++                  
T Consensus        29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~  108 (214)
T 1sgw_A           29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV  108 (214)
T ss_dssp             EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC
Confidence            45677899999999999999999999984311          000      0 00 000000                  


Q ss_pred             -------------------Ccchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEE
Q psy11689        216 -------------------SPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTN  271 (390)
Q Consensus       216 -------------------~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~  271 (390)
                                         .....  ...+..+..+++|...+|.++++||+.+.+|........+.+..   .+.+.+.
T Consensus       109 ~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiii  188 (214)
T 1sgw_A          109 KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII  188 (214)
T ss_dssp             CCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEE
T ss_pred             chHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence                               00000  12344456778889999999999999999999888776655533   2467777


Q ss_pred             eccCHHH
Q psy11689        272 GGYREQT  278 (390)
Q Consensus       272 ~~~~~~~  278 (390)
                      .+|.+..
T Consensus       189 vtHd~~~  195 (214)
T 1sgw_A          189 SSREELS  195 (214)
T ss_dssp             EESSCCT
T ss_pred             EeCCHHH
Confidence            8887543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.45  E-value=4.2e-07  Score=85.38  Aligned_cols=52  Identities=15%  Similarity=0.059  Sum_probs=40.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC---CCcE--EEeccCHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP---RIPR--TNGGYREQTA  279 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~---~~~~--i~~~~~~~~i  279 (390)
                      ..+++|...+|.++++||+.+.+|........+.+...   +.+.  +.++|.+..+
T Consensus       170 v~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~  226 (279)
T 2ihy_A          170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEI  226 (279)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGC
T ss_pred             HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHH
Confidence            46678889999999999999999998887776655332   5677  8888875443

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.45  E-value=3e-07  Score=103.38  Aligned_cols=62  Identities=21%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .++.+-.+++|...+|.|+++||+.+.+|..++......+..  .+.+.+.++|++..+..+++
T Consensus       530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~  593 (1284)
T 3g5u_A          530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADV  593 (1284)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCE
Confidence            456667888999999999999999999999887776665532  47899999999998877665

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.44  E-value=2.2e-07  Score=88.56  Aligned_cols=78  Identities=15%  Similarity=0.125  Sum_probs=54.0

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc--ccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA--AQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~--~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~  251 (390)
                      ++.++..++|+||||||||+|+.++|.+.+.++.+++.  .+.+..+....++.+..++......+  +||||++..+..
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~  196 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG  196 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence            45677788999999999999999999876666555554  33333333444555555666655554  999999999865


Q ss_pred             hh
Q psy11689        252 CE  253 (390)
Q Consensus       252 ~r  253 (390)
                      ..
T Consensus       197 ~~  198 (331)
T 2vhj_A          197 AA  198 (331)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.44  E-value=1.1e-06  Score=82.12  Aligned_cols=57  Identities=11%  Similarity=0.089  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC---CCcEEEeccCHHHHH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP---RIPRTNGGYREQTAD  280 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~---~~~~i~~~~~~~~i~  280 (390)
                      +..+..+++|...+|.++++||+.+.+|........+.+...   +.+.+.++|.+..+.
T Consensus       169 q~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~  228 (267)
T 2zu0_C          169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILD  228 (267)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHH
Confidence            334456778888899999999999999999988887776543   577888999865544

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.43  E-value=2.6e-07  Score=99.87  Aligned_cols=112  Identities=20%  Similarity=0.207  Sum_probs=68.2

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcc---
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPY---  218 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~---  218 (390)
                      ++.|.+..++.+...+......   ... .-.+...+||+||||||||++|++++..+   +.+++.++++++....   
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g---~~~-~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s  634 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAG---LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS  634 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGG---CSC-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred             ccCCcHHHHHHHHHHHHHHhcc---cCC-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHH
Confidence            4566666666666665431100   000 01233589999999999999999999988   7788888887765432   


Q ss_pred             ---------hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh
Q psy11689        219 ---------VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK  263 (390)
Q Consensus       219 ---------~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~  263 (390)
                               +|..+  ...+........++||||||++.+ +....+...+.+.
T Consensus       635 ~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-~~~~~~~Ll~~l~  685 (854)
T 1qvr_A          635 RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-HPDVFNILLQILD  685 (854)
T ss_dssp             GC----------------CHHHHHHHCSSEEEEESSGGGS-CHHHHHHHHHHHT
T ss_pred             HHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-CHHHHHHHHHHhc
Confidence                     12211  122333444556789999999985 4444444444443

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.42  E-value=4.4e-07  Score=88.98  Aligned_cols=216  Identities=12%  Similarity=0.041  Sum_probs=106.6

Q ss_pred             CCccChHHHHHHHHHHH-hccccCHHHhhhcCCCCCceEEE--EcCCCChHHHHHHHHHHhh---------ccchhcccc
Q psy11689        144 PELGGLKGVRALMEKTV-EWPFKYAREFERLAIPKPKGILL--YGPPGCAKTSLVRTLAAHS---------VYRVLAASA  211 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~vLl--~GppGtGKT~La~aia~~~---------~~~~~~i~~  211 (390)
                      ..+.|-+...+.+.+.+ ......      . -..+..++|  +||+|+|||+|++.++...         ++.++.+++
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~------~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSG------A-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA   94 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTS------S-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcC------C-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence            37888888888887776 432110      0 024567999  9999999999999999775         345556664


Q ss_pred             ccccCc------c----------hhhHH-HHHHHHHHHHH-hcCCeEEEEcCCCCCCCh-----hhHHHHHHHhhc----
Q psy11689        212 AQLYSP------Y----------VGEAE-QNVTQLFHRAR-LAAPAILFIDEIERTYNC-----EYREQTADNAKK----  264 (390)
Q Consensus       212 ~~~~~~------~----------~g~~~-~~i~~~f~~A~-~~~p~il~lDEid~~l~~-----r~~~~~~~~~~~----  264 (390)
                      ......      .          .+... .....+..... ...|.||+|||++.+...     ..-......+..    
T Consensus        95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~  174 (412)
T 1w5s_A           95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR  174 (412)
T ss_dssp             GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred             CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence            321110      0          01111 11222222221 356889999999987642     211111122221    


Q ss_pred             ---CCCcEEEeccCHHHHHhcC--chhHHHhHHHhhhhcCC--chhHHHhhcccc--cccCCCCCCCCcchhhhcCC---
Q psy11689        265 ---PRIPRTNGGYREQTADTAN--KPRIQRTKREYREQTAD--TAHKTRISRTNR--GYREKTADTANKPRIPRTNR---  332 (390)
Q Consensus       265 ---~~~~~i~~~~~~~~i~~t~--~~~~~r~~~~~l~~l~~--~~~r~~I~~~n~--~~r~~~~~~vdl~~la~~t~---  332 (390)
                         ..+..+..++.........  .+.+...+... ..++.  ..+...++....  .......++..+..+++.+.   
T Consensus       175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~-i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  253 (412)
T 1w5s_A          175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFK-LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK  253 (412)
T ss_dssp             TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEE-EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred             CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCe-eeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence               1222232332221110000  01111111000 12222  223333321100  00011112122445667777   


Q ss_pred             ---CCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHH
Q psy11689        333 ---GYREYSAQNANTANKPRIQRTKREYREQTADTANKPRI  370 (390)
Q Consensus       333 ---gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~  370 (390)
                         |.   ...+..++..|...|..++...++.+++..++-
T Consensus       254 ~~~G~---p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~  291 (412)
T 1w5s_A          254 GGDGS---ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS  291 (412)
T ss_dssp             TSCCC---HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             cCCCc---HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence               64   567888888888888777777888888876653

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.41  E-value=2.3e-08  Score=94.93  Aligned_cols=78  Identities=21%  Similarity=0.268  Sum_probs=65.4

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE   83 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t   83 (390)
                      .+++++++||+++.+|++++|              ||||+ .|.+|. +.++|.+|+..    ..+..++++ +.+|..|
T Consensus       153 ~~v~vi~atn~~~~ld~al~r--------------~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~-~~la~~~  217 (301)
T 3cf0_A          153 KNVFIIGATNRPDIIDPAILR--------------PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL-EFLAKMT  217 (301)
T ss_dssp             SSEEEEEEESCGGGSCGGGGS--------------TTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH-HHHHHTC
T ss_pred             CCEEEEEecCCccccChHHhc--------------CCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH-HHHHHHc
Confidence            479999999999988888887              99999 777777 46778888865    345678899 8899999


Q ss_pred             cCCccccccccccccchhh
Q psy11689         84 EGIAGENLQRGGGEEGIEL  102 (390)
Q Consensus        84 ~G~~g~~l~~~~~ea~~~~  102 (390)
                      .||+|+||..+|.++....
T Consensus       218 ~g~sg~dl~~l~~~a~~~a  236 (301)
T 3cf0_A          218 NGFSGADLTEICQRACKLA  236 (301)
T ss_dssp             SSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999998887653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.41  E-value=9.7e-07  Score=82.14  Aligned_cols=53  Identities=15%  Similarity=0.039  Sum_probs=42.5

Q ss_pred             HHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHH
Q psy11689        228 QLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTAD  280 (390)
Q Consensus       228 ~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~  280 (390)
                      ..+++|...+|.++++||+.+.+|........+.+..   .+.+.+.++|.+..+.
T Consensus       162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~  217 (262)
T 1b0u_A          162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR  217 (262)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHH
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            4667888899999999999999999888777665432   3788999999876654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.39  E-value=4.5e-07  Score=101.94  Aligned_cols=63  Identities=21%  Similarity=0.176  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.++.+-.+++|...+|.|+++||+.+.+|........+.+..  .+.+.+.++|++..+..+++
T Consensus      1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dr 1238 (1284)
T 3g5u_A         1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADL 1238 (1284)
T ss_dssp             HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSE
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCE
Confidence            3456677899999999999999999999999988877766643  36789999999877666554

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.35  E-value=5e-07  Score=84.03  Aligned_cols=104  Identities=17%  Similarity=0.213  Sum_probs=63.9

Q ss_pred             hhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc---hhcccccc--c-cC---cc-----hhhHHHHHHHHHHHHHhc
Q psy11689        171 ERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR---VLAASAAQ--L-YS---PY-----VGEAEQNVTQLFHRARLA  236 (390)
Q Consensus       171 ~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~---~~~i~~~~--~-~~---~~-----~g~~~~~i~~~f~~A~~~  236 (390)
                      +++.+.++..++|.||+|+|||||+++++......   -+.+....  . ..   .+     ++.....++..++++...
T Consensus        18 ~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~   97 (261)
T 2eyu_A           18 LELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE   97 (261)
T ss_dssp             HHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHH
T ss_pred             HHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhh
Confidence            33336788999999999999999999999764321   01111100  0 00   00     111112356788888889


Q ss_pred             CCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHH
Q psy11689        237 APAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQT  278 (390)
Q Consensus       237 ~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~  278 (390)
                      .|.++++||+.   |........... ..+.+.+...|....
T Consensus        98 ~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~~  135 (261)
T 2eyu_A           98 DPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNTA  135 (261)
T ss_dssp             CCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSSH
T ss_pred             CCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcchH
Confidence            99999999997   554443333332 345666777776543

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.35  E-value=4.4e-08  Score=98.74  Aligned_cols=80  Identities=23%  Similarity=0.294  Sum_probs=67.2

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      .+++++|++||+++.+|++++|              ||||+ .|.+|. +.++|.+|++.    ..+.+++++ +.+|+.
T Consensus       152 ~~~viVIaaTn~~~~Ld~allR--------------~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l-~~la~~  216 (476)
T 2ce7_A          152 KEGIIVMAATNRPDILDPALLR--------------PGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNL-EIIAKR  216 (476)
T ss_dssp             GGTEEEEEEESCGGGSCGGGGS--------------TTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHT
T ss_pred             CCCEEEEEecCChhhhchhhcc--------------cCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhH-HHHHHh
Confidence            3579999999999988888887              99999 666666 36688888876    456788998 889999


Q ss_pred             hcCCccccccccccccchhhh
Q psy11689         83 EEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      |.|++|+||..+|.+++....
T Consensus       217 t~G~sgadL~~lv~~Aal~A~  237 (476)
T 2ce7_A          217 TPGFVGADLENLVNEAALLAA  237 (476)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999887644

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.33  E-value=2.2e-06  Score=87.83  Aligned_cols=111  Identities=19%  Similarity=0.172  Sum_probs=75.7

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chhc--------ccc-----------------------
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVLA--------ASA-----------------------  211 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~~--------i~~-----------------------  211 (390)
                      .+.+++.+.|.||+|+|||||+++++.....           .++.        .+.                       
T Consensus       308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~  387 (538)
T 1yqt_A          308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLK  387 (538)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTT
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHH
Confidence            3568999999999999999999999943210           0000        000                       


Q ss_pred             ----ccccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689        212 ----AQLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT  281 (390)
Q Consensus       212 ----~~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~  281 (390)
                          .......+.  .+.+..+.++++|...+|.++++||+.+.+|........+.+..    .+.+.+.++|....+..
T Consensus       388 ~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~  467 (538)
T 1yqt_A          388 PLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY  467 (538)
T ss_dssp             TTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred             HcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence                000000011  12344556888999999999999999999999988877766543    36788999998766654


Q ss_pred             -cCc
Q psy11689        282 -ANK  284 (390)
Q Consensus       282 -t~~  284 (390)
                       |++
T Consensus       468 ~~dr  471 (538)
T 1yqt_A          468 VSDR  471 (538)
T ss_dssp             HCSE
T ss_pred             hCCE
Confidence             444

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.33  E-value=2e-06  Score=89.24  Aligned_cols=108  Identities=19%  Similarity=0.153  Sum_probs=73.4

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------chhc--------cccc----------------------
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------RVLA--------ASAA----------------------  212 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------~~~~--------i~~~----------------------  212 (390)
                      .+.+++.+.|.||+|+|||||+++++.....           .++.        .+..                      
T Consensus       378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~  457 (607)
T 3bk7_A          378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLK  457 (607)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHH
Confidence            3568999999999999999999999953210           0000        0000                      


Q ss_pred             -----cccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh
Q psy11689        213 -----QLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT  281 (390)
Q Consensus       213 -----~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~  281 (390)
                           .+....+.  .+.+..+..+++|...+|.++++||+.+.+|........+.+..    .+.+.+.++|.+..+..
T Consensus       458 ~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~  537 (607)
T 3bk7_A          458 PLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDY  537 (607)
T ss_dssp             HHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             HcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence                 00000010  12234445778899999999999999999999988777666543    36788999998766654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.32  E-value=2.1e-06  Score=76.61  Aligned_cols=38  Identities=21%  Similarity=0.169  Sum_probs=30.7

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA  211 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~  211 (390)
                      +++++..++|+||||+|||+|+..+|...+.++++++.
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~   53 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT   53 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence            57889999999999999999999999744445554443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.31  E-value=3.1e-06  Score=86.75  Aligned_cols=62  Identities=13%  Similarity=0.016  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHh-cCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+..+..+++|...+|.+|++||+.+.+|........+.+.   ..+.+.+.++|+...+.. |++
T Consensus       162 GekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dr  227 (538)
T 1yqt_A          162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDI  227 (538)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            34556688899999999999999999999987776655443   347889999999876654 443

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.31  E-value=3e-06  Score=78.83  Aligned_cols=108  Identities=19%  Similarity=0.159  Sum_probs=73.8

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh---c------cch--------h--cc-ccccc-----------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---V------YRV--------L--AA-SAAQL-----------------  214 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~------~~~--------~--~i-~~~~~-----------------  214 (390)
                      ++.+. +..+.|.||+|+|||||+++++...   |      .++        +  ++ ..+.+                 
T Consensus        25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~  103 (263)
T 2pjz_A           25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL  103 (263)
T ss_dssp             EEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCC
T ss_pred             eEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcch
Confidence            56688 9999999999999999999998542   1      000        0  00 00000                 


Q ss_pred             ------------------cCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEecc
Q psy11689        215 ------------------YSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGY  274 (390)
Q Consensus       215 ------------------~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~  274 (390)
                                        ......  ...+..+..+++|...+|.++++||+.+.+|........+.+....-+.+..+|
T Consensus       104 ~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtH  183 (263)
T 2pjz_A          104 DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTH  183 (263)
T ss_dssp             CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEES
T ss_pred             HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEc
Confidence                              000000  122444557788899999999999999999999988887777654338888999


Q ss_pred             CHHHHH
Q psy11689        275 REQTAD  280 (390)
Q Consensus       275 ~~~~i~  280 (390)
                      .+..+.
T Consensus       184 d~~~~~  189 (263)
T 2pjz_A          184 ELDMLN  189 (263)
T ss_dssp             CGGGGG
T ss_pred             CHHHHH
Confidence            876544

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.29  E-value=3.2e-06  Score=87.74  Aligned_cols=62  Identities=16%  Similarity=-0.017  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+..+.++++|...+|.|+++||+.+.+|........+.+..    .+.+.+.++|.+..+.. +++
T Consensus       471 GqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDr  537 (608)
T 3j16_B          471 GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADK  537 (608)
T ss_dssp             HHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            355567889999999999999999999999887776655533    37889999999876654 444

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.28  E-value=1.1e-06  Score=78.94  Aligned_cols=103  Identities=16%  Similarity=0.130  Sum_probs=60.3

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhcccccc------------------cc-------Cc--------
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQ------------------LY-------SP--------  217 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~------------------~~-------~~--------  217 (390)
                      ++.++..++|+||||+|||||++.++...   +..++.++...                  ..       ..        
T Consensus        19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (235)
T 2w0m_A           19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ   98 (235)
T ss_dssp             SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred             CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence            56788999999999999999999998432   11221111100                  00       00        


Q ss_pred             c---hhhHHHHHHHHHHHHHhcCCe--EEEEcCCCCCC--ChhhHHHHHHHh----hcCCCcEEEeccCH
Q psy11689        218 Y---VGEAEQNVTQLFHRARLAAPA--ILFIDEIERTY--NCEYREQTADNA----KKPRIPRTNGGYRE  276 (390)
Q Consensus       218 ~---~g~~~~~i~~~f~~A~~~~p~--il~lDEid~~l--~~r~~~~~~~~~----~~~~~~~i~~~~~~  276 (390)
                      +   .....+....+...+...+|.  +|++||+..++  +..........+    ...+.+.+..+|..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A           99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence            0   001223334455555667899  99999999887  554433333332    23466777777754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.27  E-value=3.9e-06  Score=85.89  Aligned_cols=58  Identities=10%  Similarity=-0.032  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHh
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADT  281 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~  281 (390)
                      +..+..+++|....|.|+++||+.+.+|........+.+..  .+.+.+.++|++..+..
T Consensus       143 e~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~  202 (538)
T 3ozx_A          143 GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY  202 (538)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence            44556788999999999999999999999877666554432  27889999999877654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.27  E-value=7.8e-07  Score=86.46  Aligned_cols=105  Identities=13%  Similarity=0.147  Sum_probs=65.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhcc----chhcccc-ccccC---------cchhhHHHHHHHHHHHHHhcCCeEE
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVY----RVLAASA-AQLYS---------PYVGEAEQNVTQLFHRARLAAPAIL  241 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~----~~~~i~~-~~~~~---------~~~g~~~~~i~~~f~~A~~~~p~il  241 (390)
                      .++..+++.||+|||||||+++++.....    .++.+.- .++..         ...+.....+...+++|....|++|
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi  200 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII  200 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence            46678999999999999999999876532    2221111 11100         0011111345568899999999999


Q ss_pred             EEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689        242 FIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       242 ~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      ++||+.   +.......... ...+.+.+...|....+..+++
T Consensus       201 llDEp~---d~e~~~~~~~~-~~~G~~vl~t~H~~~~~~~~dR  239 (356)
T 3jvv_A          201 LVGEMR---DLETIRLALTA-AETGHLVFGTLHTTSAAKTIDR  239 (356)
T ss_dssp             EESCCC---SHHHHHHHHHH-HHTTCEEEEEESCSSHHHHHHH
T ss_pred             ecCCCC---CHHHHHHHHHH-HhcCCEEEEEEccChHHHHHHH
Confidence            999997   34333322222 3346677888887665555443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.25  E-value=6e-06  Score=85.67  Aligned_cols=61  Identities=10%  Similarity=-0.033  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|....|.++++||+.+.+|..........+   ...+.+.+.++|++..+.. +++
T Consensus       226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~dr  290 (608)
T 3j16_B          226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF  290 (608)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            344457778999999999999999999998876665544   3346788999999877654 443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.23  E-value=5.9e-07  Score=86.43  Aligned_cols=108  Identities=9%  Similarity=0.087  Sum_probs=69.4

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhhcc--chhcccccccc-----Cc---chhhHHHHHHHHHHHHHhcCCeEEE
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAASAAQLY-----SP---YVGEAEQNVTQLFHRARLAAPAILF  242 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~~~~~~-----~~---~~g~~~~~i~~~f~~A~~~~p~il~  242 (390)
                      +.+.++..++|.||+|+|||||+++++.....  ..+.+......     ..   +.....+..+..+++|....|.+++
T Consensus       166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ili  245 (330)
T 2pt7_A          166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRII  245 (330)
T ss_dssp             HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEE
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEE
Confidence            34557889999999999999999999976532  12222221110     01   1111234567788899999999999


Q ss_pred             EcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCc
Q psy11689        243 IDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       243 lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +||+.+   ... ......+.....+.+...|.......+++
T Consensus       246 ldE~~~---~e~-~~~l~~~~~g~~tvi~t~H~~~~~~~~dr  283 (330)
T 2pt7_A          246 LGELRS---SEA-YDFYNVLCSGHKGTLTTLHAGSSEEAFIR  283 (330)
T ss_dssp             ECCCCS---THH-HHHHHHHHTTCCCEEEEEECSSHHHHHHH
T ss_pred             EcCCCh---HHH-HHHHHHHhcCCCEEEEEEcccHHHHHhhh
Confidence            999997   222 22334444444567888888765555544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.21  E-value=1.7e-06  Score=77.73  Aligned_cols=28  Identities=32%  Similarity=0.362  Sum_probs=25.9

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ++.++..+.|.||||+|||||++.++..
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            6788999999999999999999999873

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.20  E-value=6.2e-06  Score=85.59  Aligned_cols=59  Identities=14%  Similarity=-0.000  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHh
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADT  281 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~  281 (390)
                      .+..+..+++|...+|.++++||+.+.+|........+.+..   .+.+.+.++|++..+..
T Consensus       232 GekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~  293 (607)
T 3bk7_A          232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY  293 (607)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHh
Confidence            345566888999999999999999999999887766555433   37889999999876654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.19  E-value=4.3e-06  Score=90.54  Aligned_cols=110  Identities=16%  Similarity=0.220  Sum_probs=76.9

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHh-h-ccc------hhccc--c---------ccc------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH-S-VYR------VLAAS--A---------AQL------------------  214 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~-~-~~~------~~~i~--~---------~~~------------------  214 (390)
                      ++.+.+|..+.|.||+|+|||||+++|+.- . +.+      ..++.  .         .+.                  
T Consensus       455 sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~  534 (986)
T 2iw3_A          455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE  534 (986)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHH
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHH
Confidence            556778999999999999999999999841 0 110      00000  0         000                  


Q ss_pred             -------cCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHh
Q psy11689        215 -------YSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADT  281 (390)
Q Consensus       215 -------~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~  281 (390)
                             .....+  .+.+..+..+++|...+|.++++||+.+.+|........+.+...+.+.+.++|+...+..
T Consensus       535 lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~  610 (986)
T 2iw3_A          535 FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDN  610 (986)
T ss_dssp             TTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHH
T ss_pred             cCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence                   000000  1224455678889999999999999999999998888877776667889999999876653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.18  E-value=4.4e-07  Score=86.45  Aligned_cols=71  Identities=18%  Similarity=0.277  Sum_probs=43.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc----cchhccccccccCcchhh-HHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV----YRVLAASAAQLYSPYVGE-AEQNVTQLFHRARLAAPAILFIDEIERT  249 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~----~~~~~i~~~~~~~~~~g~-~~~~i~~~f~~A~~~~p~il~lDEid~~  249 (390)
                      .+.+++|+||||||||+|+.++|.++.    .+++.+..++++...... ........+..  ...+.+|||||++..
T Consensus       151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~lLiiDdig~~  226 (308)
T 2qgz_A          151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA--VKNVPVLILDDIGAE  226 (308)
T ss_dssp             SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHH--HHTSSEEEEETCCC-
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCC
Confidence            368899999999999999999997654    555556655443221110 00011112222  234579999999654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.16  E-value=1.8e-07  Score=94.89  Aligned_cols=79  Identities=23%  Similarity=0.334  Sum_probs=65.4

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE   83 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t   83 (390)
                      ..++++++||+++.+|++++|              ||||+ .|.+|. +..+|++||+.    ..+.+++++ +.+|+.|
T Consensus       168 ~~viviAatn~p~~LD~aLlr--------------~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l-~~lA~~t  232 (499)
T 2dhr_A          168 TAIVVMAATNRPDILDPALLR--------------PGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL-ALLAKRT  232 (499)
T ss_dssp             CCCEEEECCSCGGGSCTTTSS--------------TTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTT-HHHHTTS
T ss_pred             ccEEEEEecCChhhcCccccc--------------ccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHH-HHHHHhc
Confidence            468999999999887777776              99999 666666 46788898876    447788999 8899999


Q ss_pred             cCCccccccccccccchhhh
Q psy11689         84 EGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        84 ~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .|++|+||..++.+++..+.
T Consensus       233 ~G~~gadL~~lv~~Aa~~A~  252 (499)
T 2dhr_A          233 PGFVGADLENLLNEAALLAA  252 (499)
T ss_dssp             CSCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999998877643

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=98.13  E-value=1.1e-07  Score=73.25  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=44.3

Q ss_pred             CCCCCccCcccccc----ccCCcccchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689         53 LPTAPQGRETELPF----TKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        53 ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      -|++.++|++||++    ++++++||+ +.||+.|+||||+||..+|.+|++....
T Consensus         9 ~~Pd~~~R~~IL~~~l~~~~l~~dvdl-~~LA~~T~G~SGADL~~l~~eAa~~alr   63 (86)
T 2krk_A            9 SHPNEEARLDILKIHSRKMNLTRGINL-RKIAELMPGASGAEVKGVCTEAGMYALR   63 (86)
T ss_dssp             CCCCHHHHHHHHHHHTTTSEECTTCCC-HHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHcCCCCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            45559999999988    557789999 9999999999999999999999987543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.12  E-value=5.6e-06  Score=87.05  Aligned_cols=60  Identities=8%  Similarity=-0.053  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhcCC---eEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHhcC
Q psy11689        224 QNVTQLFHRARLAAP---AILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p---~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~t~  283 (390)
                      +..+..+++|...+|   .+|++||+.+.+|......+.+.+.   ..+.+.+.++|.+..+..++
T Consensus       548 ~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d  613 (670)
T 3ux8_A          548 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTAD  613 (670)
T ss_dssp             HHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCS
T ss_pred             HHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCC
Confidence            555678888887765   6999999999999988877665543   34789999999976554443

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.12  E-value=8e-06  Score=85.87  Aligned_cols=61  Identities=10%  Similarity=-0.075  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhcCCe--EEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHhcCc
Q psy11689        224 QNVTQLFHRARLAAPA--ILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~--il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +..+..+++|...+|.  ++++||+.+.+|........+.+.   ..+.+.+.++|.+..+..+++
T Consensus       207 e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~  272 (670)
T 3ux8_A          207 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADY  272 (670)
T ss_dssp             HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSE
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCE
Confidence            4556688888888888  999999999999988877765443   347899999999887665554

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.10  E-value=3.9e-07  Score=87.37  Aligned_cols=78  Identities=18%  Similarity=0.264  Sum_probs=63.2

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccC-CcccchHHHHHH
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKL-NEEVELSENVQR   81 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~-~~~v~l~~~la~   81 (390)
                      .++++++++||+++.+|++++|                ||+ .+.+|. +.++|.+|+..    ... -+++++ +.||+
T Consensus       147 ~~~v~vI~atn~~~~ld~al~r----------------Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l-~~la~  209 (322)
T 1xwi_A          147 NDGILVLGATNIPWVLDSAIRR----------------RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADF-RELGR  209 (322)
T ss_dssp             CTTEEEEEEESCTTTSCHHHHH----------------TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHH-HHHHH
T ss_pred             CCCEEEEEecCCcccCCHHHHh----------------hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHH-HHHHH
Confidence            3679999999999999999887                787 566666 47788888876    222 256788 88999


Q ss_pred             hhcCCccccccccccccchhhh
Q psy11689         82 EEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        82 ~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .|.||+|+||..+|.++.+...
T Consensus       210 ~t~G~sgadl~~l~~~A~~~a~  231 (322)
T 1xwi_A          210 KTDGYSGADISIIVRDALMQPV  231 (322)
T ss_dssp             TCTTCCHHHHHHHHHHHHTHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999887643

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.10  E-value=3.2e-07  Score=84.42  Aligned_cols=79  Identities=23%  Similarity=0.334  Sum_probs=65.3

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE   83 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t   83 (390)
                      ..++++++||+++.+|++++|              +|||+ .|++|. +.++|.+|+..    ..+.+++++ ..+|+.|
T Consensus       153 ~~~i~~a~t~~p~~ld~~l~r--------------~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~-~~la~~~  217 (254)
T 1ixz_A          153 TAIVVMAATNRPDILDPALLR--------------PGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL-ALLAKRT  217 (254)
T ss_dssp             CCEEEEEEESCGGGSCGGGGS--------------TTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHTC
T ss_pred             CCEEEEEccCCchhCCHHHcC--------------CCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCH-HHHHHHc
Confidence            347899999999998888888              99999 777776 46778888875    446778888 8899999


Q ss_pred             cCCccccccccccccchhhh
Q psy11689         84 EGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        84 ~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .|++|+||..++.++...+.
T Consensus       218 ~G~~~~dl~~~~~~a~~~a~  237 (254)
T 1ixz_A          218 PGFVGADLENLLNEAALLAA  237 (254)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999888877543

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.08  E-value=5.9e-06  Score=78.55  Aligned_cols=82  Identities=11%  Similarity=0.086  Sum_probs=53.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhc------cchhccccccccCcchhhHHHHHHHHHHHHHhcC----CeEEEEcCCC
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSV------YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAA----PAILFIDEIE  247 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~------~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~----p~il~lDEid  247 (390)
                      ...+||+||||+|||++++++|..++      ..++.++...     ...+...++.++..+...+    ..|+||||+|
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~id~ir~li~~~~~~p~~~~~kvviIdead   92 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE   92 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence            45899999999999999999998642      2233333221     0123345677777775432    4799999999


Q ss_pred             CCCChhhHHHHHHHhhcC
Q psy11689        248 RTYNCEYREQTADNAKKP  265 (390)
Q Consensus       248 ~~l~~r~~~~~~~~~~~~  265 (390)
                      .+-. ...+.....+..+
T Consensus        93 ~lt~-~a~naLLk~LEep  109 (305)
T 2gno_A           93 RMTQ-QAANAFLKALEEP  109 (305)
T ss_dssp             GBCH-HHHHHTHHHHHSC
T ss_pred             HhCH-HHHHHHHHHHhCC
Confidence            9743 3344455555554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.07  E-value=4.1e-07  Score=83.90  Aligned_cols=80  Identities=19%  Similarity=0.255  Sum_probs=65.2

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      .++++++++||+++.+|++++|              +|||+ .+.+|. +.++|.+++..    ..+.+++++ ..+|..
T Consensus       148 ~~~~~vI~~tn~~~~l~~~l~r--------------~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~-~~la~~  212 (257)
T 1lv7_A          148 NEGIIVIAATNRPDVLDPALLR--------------PGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA-AIIARG  212 (257)
T ss_dssp             SSCEEEEEEESCTTTSCGGGGS--------------TTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHT
T ss_pred             CCCEEEEEeeCCchhCCHHHcC--------------CCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccH-HHHHHH
Confidence            3578999999999988888887              99999 666655 36788888765    446678888 889999


Q ss_pred             hcCCccccccccccccchhhh
Q psy11689         83 EEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      |.||+++||..++.++...+.
T Consensus       213 ~~G~~~~dl~~l~~~a~~~a~  233 (257)
T 1lv7_A          213 TPGFSGADLANLVNEAALFAA  233 (257)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999888877543

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=98.07  E-value=3.8e-06  Score=96.53  Aligned_cols=80  Identities=19%  Similarity=0.198  Sum_probs=59.5

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhcccccccc----------------CcchhhHHHHHHHHHHHHH
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLY----------------SPYVGEAEQNVTQLFHRAR  234 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~----------------~~~~g~~~~~i~~~f~~A~  234 (390)
                      +++++++++|+||||||||+||.+++.++   |..+.+++..+.+                -......++.++.++..++
T Consensus      1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A         1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence            48899999999999999999999998664   3334444433221                1112245577778888889


Q ss_pred             hcCCeEEEEcCCCCCCChh
Q psy11689        235 LAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       235 ~~~p~il~lDEid~~l~~r  253 (390)
                      ..+|++||||+++.+++..
T Consensus      1503 ~~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A         1503 SGAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp             HTCCSEEEESCGGGCCCHH
T ss_pred             cCCCCEEEEcChhHhcccc
Confidence            9999999999999888753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.05  E-value=6.6e-06  Score=74.51  Aligned_cols=81  Identities=16%  Similarity=0.145  Sum_probs=50.9

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHh--h-------ccchhccccccccC--------------------------c
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH--S-------VYRVLAASAAQLYS--------------------------P  217 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~--~-------~~~~~~i~~~~~~~--------------------------~  217 (390)
                      -+++++..++|+||||+|||+|+..++..  .       +...++++....+.                          .
T Consensus        19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   98 (243)
T 1n0w_A           19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA   98 (243)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence            36778999999999999999999999984  2       22344444322100                          0


Q ss_pred             c-hhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        218 Y-VGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       218 ~-~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      + ..+....+..+...+....|.+|+|||+..+++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~  135 (243)
T 1n0w_A           99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD  135 (243)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred             CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence            0 00111122334444556789999999999998764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.03  E-value=1.3e-05  Score=76.93  Aligned_cols=88  Identities=9%  Similarity=0.171  Sum_probs=53.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc-------------c---ccccccCcc-----hhhHHHHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA-------------A---SAAQLYSPY-----VGEAEQNVTQLFHRARL  235 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~-------------i---~~~~~~~~~-----~g~~~~~i~~~f~~A~~  235 (390)
                      .+..+||+||||+|||++++++|..+......             +   ..+++..-.     ...+...++.++..+..
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~  102 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE  102 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence            45679999999999999999999886532210             0   001111000     11123456667666543


Q ss_pred             ----cCCeEEEEcCCCCCCChhhHHHHHHHhhcC
Q psy11689        236 ----AAPAILFIDEIERTYNCEYREQTADNAKKP  265 (390)
Q Consensus       236 ----~~p~il~lDEid~~l~~r~~~~~~~~~~~~  265 (390)
                          ..+.|++|||+|.+-. ...+.....+...
T Consensus       103 ~~~~~~~kvviIdead~l~~-~a~naLLk~lEep  135 (334)
T 1a5t_A          103 HARLGGAKVVWVTDAALLTD-AAANALLKTLEEP  135 (334)
T ss_dssp             CCTTSSCEEEEESCGGGBCH-HHHHHHHHHHTSC
T ss_pred             ccccCCcEEEEECchhhcCH-HHHHHHHHHhcCC
Confidence                3468999999998743 3344455555554

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.01  E-value=1.5e-06  Score=77.55  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=27.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      ++...+++++||||||||+++.++|+.....++
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~   87 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI   87 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            455678999999999999999999998764443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.98  E-value=9.5e-07  Score=82.54  Aligned_cols=78  Identities=23%  Similarity=0.341  Sum_probs=65.6

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE   83 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t   83 (390)
                      ..++++++||+++.+|++++|              ++||+ .|++|. +.++|.+|+..    ..+.+++++ ..+|..|
T Consensus       177 ~~~i~~a~t~~p~~ld~~l~r--------------~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~-~~la~~~  241 (278)
T 1iy2_A          177 TAIVVMAATNRPDILDPALLR--------------PGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL-ALLAKRT  241 (278)
T ss_dssp             CCEEEEEEESCTTSSCHHHHS--------------TTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHTC
T ss_pred             CCEEEEEecCCchhCCHhHcC--------------CCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCH-HHHHHHc
Confidence            347899999999999999999              99999 777776 46788888875    446678888 8899999


Q ss_pred             cCCccccccccccccchhh
Q psy11689         84 EGIAGENLQRGGGEEGIEL  102 (390)
Q Consensus        84 ~G~~g~~l~~~~~ea~~~~  102 (390)
                      .|++|+||..++.++....
T Consensus       242 ~G~~~~dl~~l~~~a~~~a  260 (278)
T 1iy2_A          242 PGFVGADLENLLNEAALLA  260 (278)
T ss_dssp             TTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999988877654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.97  E-value=1.3e-05  Score=77.66  Aligned_cols=31  Identities=29%  Similarity=0.259  Sum_probs=28.1

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ..+++++..+.|+||||+|||+|++.++...
T Consensus       125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999999999765

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.97  E-value=9.6e-06  Score=79.95  Aligned_cols=61  Identities=10%  Similarity=0.007  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHhcCC--eEEEEcCCCCCCChhhHHHHHHHhhcC--CCcEEEeccCHHHHHhcC
Q psy11689        223 EQNVTQLFHRARLAAP--AILFIDEIERTYNCEYREQTADNAKKP--RIPRTNGGYREQTADTAN  283 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p--~il~lDEid~~l~~r~~~~~~~~~~~~--~~~~i~~~~~~~~i~~t~  283 (390)
                      .+..+-.++.+....|  .+|+|||+++.+|........+.+...  +.+.+.++|.+.++..++
T Consensus       299 Ge~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d  363 (415)
T 4aby_A          299 GELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAH  363 (415)
T ss_dssp             HHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCS
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcC
Confidence            3445566777888889  999999999999999888887776554  578889999876554444

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=97.97  E-value=3.4e-07  Score=68.88  Aligned_cols=51  Identities=18%  Similarity=0.258  Sum_probs=44.3

Q ss_pred             eCCCCCccCcccccc----ccCCcccchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689         52 DLPTAPQGRETELPF----TKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        52 ~ip~~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      ++|+ .++|++||++    +++++++|+ +.||+.|+||||+||..+|.++++....
T Consensus         1 plPd-~~~R~~Il~~~l~~~~~~~~~dl-~~la~~t~G~SGADi~~l~~eA~~~a~~   55 (78)
T 3kw6_A            1 PPPN-EEARLDILKIHSRKMNLTRGINL-RKIAELMPGASGAEVKGVCTEAGMYALR   55 (78)
T ss_dssp             CCCC-HHHHHHHHHHHHTTSEECTTCCH-HHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CcCC-HHHHHHHHHHHhcCCCCCCccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            3676 8899999987    456789999 9999999999999999999999987543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.93  E-value=7.2e-06  Score=80.14  Aligned_cols=104  Identities=15%  Similarity=0.221  Sum_probs=60.8

Q ss_pred             HhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc----chhccccc-cc-cC---cchhh-----HHHHHHHHHHHHH
Q psy11689        169 EFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY----RVLAASAA-QL-YS---PYVGE-----AEQNVTQLFHRAR  234 (390)
Q Consensus       169 ~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~----~~~~i~~~-~~-~~---~~~g~-----~~~~i~~~f~~A~  234 (390)
                      .+.++.+.++..++|.||+|+||||++++++.....    .++.+..+ +. ..   .++.+     ....+...+..+.
T Consensus       127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L  206 (372)
T 2ewv_A          127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL  206 (372)
T ss_dssp             SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred             HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence            344445678889999999999999999999976532    12111111 00 00   01111     1123456778888


Q ss_pred             hcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCH
Q psy11689        235 LAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYRE  276 (390)
Q Consensus       235 ~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~  276 (390)
                      ...|++|++||+.   +...-....... ..+.+.+...|..
T Consensus       207 ~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~  244 (372)
T 2ewv_A          207 REDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTN  244 (372)
T ss_dssp             TSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCC
T ss_pred             hhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcc
Confidence            8899999999997   333322222332 3344455555543

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*

Probab=97.93  E-value=6.5e-07  Score=69.08  Aligned_cols=48  Identities=17%  Similarity=0.199  Sum_probs=42.6

Q ss_pred             CCccCcccccc----ccCCcccchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689         56 APQGRETELPF----TKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        56 ~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      +.++|++||++    +++++++|+ +.||+.|+||||+||..+|.+|++....
T Consensus         2 d~~~R~~Il~~~~~~~~~~~dvdl-~~lA~~t~G~SGADl~~l~~eAa~~a~r   53 (88)
T 3vlf_B            2 DLEGRANIFRIHSKSMSVERGIRW-ELISRLCPNSTGAELRSVCTEAGMFAIR   53 (88)
T ss_dssp             CSSHHHHHHHHHHTTSCBCSCCCH-HHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCCCccCH-HHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence            46889999988    667889999 9999999999999999999999987543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.89  E-value=1.9e-05  Score=85.50  Aligned_cols=57  Identities=11%  Similarity=0.028  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHH
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTAD  280 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~  280 (390)
                      +..+..+++|...+|.+|++||+.+.+|..........+.....+.+.++|....+.
T Consensus       906 QkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~  962 (986)
T 2iw3_A          906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTK  962 (986)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHH
Confidence            444567889999999999999999999999888888888777778889999865543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.88  E-value=1.3e-06  Score=82.50  Aligned_cols=69  Identities=16%  Similarity=0.093  Sum_probs=58.3

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCCCCccCccccccccCCcccchHHHHHHhhcCCc
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPTAPQGRETELPFTKLNEEVELSENVQREEEGIA   87 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~~~~~r~~~l~~~~~~~~v~l~~~la~~t~G~~   87 (390)
                      .+++++|++||+++.+|++++|              ||||+ .|.+|+ .++|.+|+..+....++++ +.+++.+.||+
T Consensus       153 ~~~v~vI~ttN~~~~ld~al~R--------------~~R~d~~i~~P~-~~~r~~Il~~~~~~~~~~~-~~l~~~~~~~~  216 (293)
T 3t15_A          153 NARVPIIVTGNDFSTLYAPLIR--------------DGRMEKFYWAPT-REDRIGVCTGIFRTDNVPA-EDVVKIVDNFP  216 (293)
T ss_dssp             CCCCCEEEECSSCCC--CHHHH--------------HHHEEEEEECCC-HHHHHHHHHHHHGGGCCCH-HHHHHHHHHSC
T ss_pred             CCCcEEEEecCCcccCCHHHhC--------------CCCCceeEeCcC-HHHHHHHHHHhccCCCCCH-HHHHHHhCCCC
Confidence            4589999999999999999999              99999 788995 8999999986444567888 88999999999


Q ss_pred             cccccc
Q psy11689         88 GENLQR   93 (390)
Q Consensus        88 g~~l~~   93 (390)
                      |++|..
T Consensus       217 ~~~l~~  222 (293)
T 3t15_A          217 GQSIDF  222 (293)
T ss_dssp             SCCHHH
T ss_pred             cccHHH
Confidence            999853

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.87  E-value=9.3e-07  Score=81.83  Aligned_cols=77  Identities=25%  Similarity=0.310  Sum_probs=62.4

Q ss_pred             eeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhhc
Q psy11689         11 TVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREEE   84 (390)
Q Consensus        11 ~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t~   84 (390)
                      +++++++||+++.+|++++|              +|||+ .+.+|. +.++|.+++..    ..+.+++++ +.+++.+.
T Consensus       151 ~v~vi~ttn~~~~ld~~l~r--------------~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~-~~la~~~~  215 (268)
T 2r62_A          151 PVIVLAATNRPEILDPALMR--------------PGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNL-QEVAKLTA  215 (268)
T ss_dssp             CCEEEECBSCCTTSCGGGGS--------------SSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCT-TTTTSSSC
T ss_pred             CEEEEEecCCchhcCHhHcC--------------CCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCH-HHHHHHcC
Confidence            48999999999888877777              99998 666666 47788888875    345577888 88999999


Q ss_pred             CCccccccccccccchhh
Q psy11689         85 GIAGENLQRGGGEEGIEL  102 (390)
Q Consensus        85 G~~g~~l~~~~~ea~~~~  102 (390)
                      |++|++|..++.++...+
T Consensus       216 g~~g~dl~~l~~~a~~~a  233 (268)
T 2r62_A          216 GLAGADLANIINEAALLA  233 (268)
T ss_dssp             SSCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999888777643

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.87  E-value=1.4e-05  Score=78.05  Aligned_cols=68  Identities=19%  Similarity=0.203  Sum_probs=47.7

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~  251 (390)
                      +++++++..++|+||||+|||||+++++...+..++.+..+..  .        .  -|......+..++++||++....
T Consensus       163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~--------~--~~~lg~~~q~~~~l~dd~~~~~~  230 (377)
T 1svm_A          163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R--------L--NFELGVAIDQFLVVFEDVKGTGG  230 (377)
T ss_dssp             HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T--------H--HHHHGGGTTCSCEEETTCCCSTT
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h--------H--HHHHHHhcchhHHHHHHHHHHHH
Confidence            3578899999999999999999999999887665544332210  0        0  11122334557789999998875

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.87  E-value=2.2e-05  Score=77.33  Aligned_cols=82  Identities=15%  Similarity=0.202  Sum_probs=50.0

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh---------ccchhccccccccCc--------------------------
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---------VYRVLAASAAQLYSP--------------------------  217 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---------~~~~~~i~~~~~~~~--------------------------  217 (390)
                      -++.++..++|+||||||||+|+..++...         +...++++....+..                          
T Consensus       173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~  252 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA  252 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence            478899999999999999999999776322         122344433221100                          


Q ss_pred             chh-hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689        218 YVG-EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEY  254 (390)
Q Consensus       218 ~~g-~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~  254 (390)
                      +.. .....+..+...+....|.+|++|++..+++...
T Consensus       253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~  290 (400)
T 3lda_A          253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF  290 (400)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred             CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence            000 1112233344445567899999999999987543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.87  E-value=2.1e-06  Score=80.10  Aligned_cols=79  Identities=27%  Similarity=0.399  Sum_probs=67.1

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHhh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQREE   83 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~t   83 (390)
                      .+++++++||+++.+|+++++              ++||+ .+.+|. +.++|.+++..    ..+..++++ +.+++.+
T Consensus       155 ~~~~vI~ttn~~~~l~~~l~~--------------~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~-~~l~~~~  219 (285)
T 3h4m_A          155 GDVKIIGATNRPDILDPAILR--------------PGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL-EEIAKMT  219 (285)
T ss_dssp             SSEEEEEECSCGGGBCHHHHS--------------TTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHHC
T ss_pred             CCEEEEEeCCCchhcCHHHcC--------------CCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCH-HHHHHHc
Confidence            478999999999999999998              99998 777777 57788888876    345677888 8899999


Q ss_pred             cCCccccccccccccchhhh
Q psy11689         84 EGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        84 ~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .|+++.++..+|.++...+.
T Consensus       220 ~g~~~~~i~~l~~~a~~~a~  239 (285)
T 3h4m_A          220 EGCVGAELKAICTEAGMNAI  239 (285)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999888877643

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.85  E-value=2e-06  Score=82.18  Aligned_cols=79  Identities=18%  Similarity=0.161  Sum_probs=63.1

Q ss_pred             hhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----cc-CCcccchHHHHH
Q psy11689          8 VCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TK-LNEEVELSENVQ   80 (390)
Q Consensus         8 ~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~-~~~~v~l~~~la   80 (390)
                      -..+++++++||+++.+|++|++                ||+ .|.+|. +.++|++|+..    .. .-++.++ +.||
T Consensus       151 ~~~~v~vi~atn~~~~ld~al~~----------------Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l-~~la  213 (322)
T 3eie_A          151 DSQGVLVLGATNIPWQLDSAIRR----------------RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDY-RTLG  213 (322)
T ss_dssp             SCCCEEEEEEESCGGGSCHHHHH----------------HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHH-HHHH
T ss_pred             cCCceEEEEecCChhhCCHHHHc----------------ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHH-HHHH
Confidence            34679999999999999999887                787 555555 47788888876    12 2256778 8899


Q ss_pred             HhhcCCccccccccccccchhhh
Q psy11689         81 REEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        81 ~~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      +.|.||+|++|..+|.++.+...
T Consensus       214 ~~t~g~sg~di~~l~~~a~~~a~  236 (322)
T 3eie_A          214 AMTEGYSGSDIAVVVKDALMQPI  236 (322)
T ss_dssp             HTTTTCCHHHHHHHHHHHTTHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998887643

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.83  E-value=2.5e-06  Score=82.85  Aligned_cols=78  Identities=18%  Similarity=0.158  Sum_probs=62.2

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccC-CcccchHHHHHH
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKL-NEEVELSENVQR   81 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~-~~~v~l~~~la~   81 (390)
                      ..+++++++||+++.+|++++|                ||+ .+.+|. +.++|.+|+..    ... -+++++ +.||+
T Consensus       185 ~~~v~vI~atn~~~~ld~al~r----------------Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l-~~la~  247 (355)
T 2qp9_X          185 SQGVLVLGATNIPWQLDSAIRR----------------RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDY-RTLGA  247 (355)
T ss_dssp             -CCEEEEEEESCGGGSCHHHHH----------------TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHH-HHHHH
T ss_pred             CCCeEEEeecCCcccCCHHHHc----------------ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHH-HHHHH
Confidence            3579999999999999999887                786 555655 37788888876    211 256788 88999


Q ss_pred             hhcCCccccccccccccchhhh
Q psy11689         82 EEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        82 ~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .|.||+|++|..+|.++.+.+.
T Consensus       248 ~t~G~sg~dl~~l~~~A~~~a~  269 (355)
T 2qp9_X          248 MTEGYSGSDIAVVVKDALMQPI  269 (355)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999887643

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.81  E-value=3.6e-05  Score=83.16  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=60.9

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHh-----hccchh--------------ccccccccCcchhh--HH-HHHHHHH
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH-----SVYRVL--------------AASAAQLYSPYVGE--AE-QNVTQLF  230 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~-----~~~~~~--------------~i~~~~~~~~~~g~--~~-~~i~~~f  230 (390)
                      +.+..++.++|.||+|+||||+++.++.-     .|..+.              .+...+........  .+ +.+..+.
T Consensus       668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il  747 (918)
T 3thx_B          668 LSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEII  747 (918)
T ss_dssp             ECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHH
Confidence            34566788999999999999999998732     221110              00101111000000  11 1111222


Q ss_pred             HHHHhcCCeEEEEcCCCCCCChhhHHHHH----HHhh-cCCCcEEEeccCHHH
Q psy11689        231 HRARLAAPAILFIDEIERTYNCEYREQTA----DNAK-KPRIPRTNGGYREQT  278 (390)
Q Consensus       231 ~~A~~~~p~il~lDEid~~l~~r~~~~~~----~~~~-~~~~~~i~~~~~~~~  278 (390)
                      .  ....|++|+|||+.+.+++.......    ..+. ..+.+.+..+|....
T Consensus       748 ~--~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el  798 (918)
T 3thx_B          748 R--KATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV  798 (918)
T ss_dssp             H--HCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred             H--hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence            2  26789999999999999987665543    3332 357888899997644

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.79  E-value=3.4e-05  Score=74.71  Aligned_cols=78  Identities=15%  Similarity=0.185  Sum_probs=51.9

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCc----------------chhhHHHHHHHHHHHHH
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSP----------------YVGEAEQNVTQLFHRAR  234 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~----------------~~g~~~~~i~~~f~~A~  234 (390)
                      +++++..++|+||||+|||+|+..++...   +..+++++.......                .....++.+..+.....
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~  136 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR  136 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence            57789999999999999999999998764   344545554332110                01122233333333334


Q ss_pred             hcCCeEEEEcCCCCCCC
Q psy11689        235 LAAPAILFIDEIERTYN  251 (390)
Q Consensus       235 ~~~p~il~lDEid~~l~  251 (390)
                      ...|+++++|.+..+.+
T Consensus       137 ~~~~dlvVIDSi~~l~~  153 (356)
T 3hr8_A          137 SGVVDLIVVDSVAALVP  153 (356)
T ss_dssp             TSCCSEEEEECTTTCCC
T ss_pred             hcCCCeEEehHhhhhcC
Confidence            57899999999999886

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.79  E-value=9.8e-06  Score=71.67  Aligned_cols=39  Identities=21%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      ++.+.++..++|.|||||||||+++.+|..++++++..+
T Consensus        19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d   57 (199)
T 3vaa_A           19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD   57 (199)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred             eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence            344567889999999999999999999999988776543

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=97.79  E-value=0.00017  Score=85.50  Aligned_cols=72  Identities=15%  Similarity=0.158  Sum_probs=56.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHH-HhcCCeEEEEcCCCC
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRA-RLAAPAILFIDEIER  248 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A-~~~~p~il~lDEid~  248 (390)
                      ..+++++||+|.+||||++|++..|.-+++.++.+......+  ..+-...++.++..| ...+|.+.+++|-.-
T Consensus      1606 ~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi 1678 (2695)
T 4akg_A         1606 KQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN--LSDFDMILKKAISDCSLKESRTCLIIDESNI 1678 (2695)
T ss_dssp             HSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC--HHHHHHHHHHHHHHHHHSCCCEEEEEETTTC
T ss_pred             cCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC--HHHHHHHHHHHHHHcCCCCCceEEEEecccc
Confidence            357889999999999999999999999999998887644322  233446788899888 456678888888753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.77  E-value=1.9e-05  Score=69.60  Aligned_cols=25  Identities=32%  Similarity=0.647  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +..+.|.||+|+|||||++.++...
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            3568999999999999999999765

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.77  E-value=2.5e-05  Score=75.56  Aligned_cols=79  Identities=22%  Similarity=0.219  Sum_probs=51.2

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcc----------------hhhHHHHHHHHHHHH
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPY----------------VGEAEQNVTQLFHRA  233 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~----------------~g~~~~~i~~~f~~A  233 (390)
                      -+++++..++|+||||+|||+|+..++...   +..+++++........                ....++.+..+...+
T Consensus        56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~  135 (349)
T 2zr9_A           56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV  135 (349)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence            357789999999999999999999998553   3344444433211110                011233333333344


Q ss_pred             HhcCCeEEEEcCCCCCCC
Q psy11689        234 RLAAPAILFIDEIERTYN  251 (390)
Q Consensus       234 ~~~~p~il~lDEid~~l~  251 (390)
                      ....|++||||++..++.
T Consensus       136 ~~~~~~lIVIDsl~~l~~  153 (349)
T 2zr9_A          136 RSGALDIIVIDSVAALVP  153 (349)
T ss_dssp             TTTCCSEEEEECGGGCCC
T ss_pred             hcCCCCEEEEcChHhhcc
Confidence            456799999999999984

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.76  E-value=8e-05  Score=69.91  Aligned_cols=29  Identities=24%  Similarity=0.314  Sum_probs=26.4

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      +++.++..++|.||||+|||||++.+|..
T Consensus        30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           30 LGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             CSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            57889999999999999999999999844

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.76  E-value=3.1e-05  Score=66.73  Aligned_cols=31  Identities=29%  Similarity=0.326  Sum_probs=27.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      +..++|+|+|||||||+++.++..++.+++.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~   33 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLA   33 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence            4579999999999999999999998776654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.75  E-value=2.8e-06  Score=84.98  Aligned_cols=78  Identities=17%  Similarity=0.237  Sum_probs=62.1

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccC-CcccchHHHHHH
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKL-NEEVELSENVQR   81 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~-~~~v~l~~~la~   81 (390)
                      ..+|+++++||+++.+|++|+|                ||+ .+.+|. +.++|.+|+..    ... -+++++ +.||+
T Consensus       269 ~~~v~vI~atn~~~~ld~al~r----------------Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l-~~la~  331 (444)
T 2zan_A          269 NDGILVLGATNIPWVLDSAIRR----------------RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADF-QELGR  331 (444)
T ss_dssp             CSSCEEEEEESCGGGSCHHHHT----------------TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHH-HHHHH
T ss_pred             CCCEEEEecCCCccccCHHHHh----------------hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHH-HHHHH
Confidence            3679999999999999988876                787 666666 36788888876    111 256788 88999


Q ss_pred             hhcCCccccccccccccchhhh
Q psy11689         82 EEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        82 ~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .|.||+|++|..+|.++.+...
T Consensus       332 ~t~G~sgadl~~l~~~a~~~a~  353 (444)
T 2zan_A          332 KTDGYSGADISIIVRDALMQPV  353 (444)
T ss_dssp             HTTTCCHHHHHHHHHHHHTHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999887633

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.74  E-value=7.3e-05  Score=80.98  Aligned_cols=103  Identities=14%  Similarity=0.013  Sum_probs=59.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHH-----hhccchh--------------ccccccccCcch--hhHH-HHHHHHHHH
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAA-----HSVYRVL--------------AASAAQLYSPYV--GEAE-QNVTQLFHR  232 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~-----~~~~~~~--------------~i~~~~~~~~~~--g~~~-~~i~~~f~~  232 (390)
                      +..++.++|.||+|+||||+++.++.     +.|..+.              .+...+......  +..+ ..+..++. 
T Consensus       659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~-  737 (934)
T 3thx_A          659 KDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILR-  737 (934)
T ss_dssp             TTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHH-
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHH-
Confidence            44567899999999999999999952     2231110              011111000000  1111 11222222 


Q ss_pred             HHhcCCeEEEEcCCCCCCChhhHHHH----HHHhhc-CCCcEEEeccCHHHH
Q psy11689        233 ARLAAPAILFIDEIERTYNCEYREQT----ADNAKK-PRIPRTNGGYREQTA  279 (390)
Q Consensus       233 A~~~~p~il~lDEid~~l~~r~~~~~----~~~~~~-~~~~~i~~~~~~~~i  279 (390)
                       ....|++|+|||+.+.+++......    ...+.. .+.+.+..+|.....
T Consensus       738 -~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~  788 (934)
T 3thx_A          738 -SATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT  788 (934)
T ss_dssp             -HCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG
T ss_pred             -hccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH
Confidence             2678999999999999998765444    334443 477888888875443

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.70  E-value=0.0001  Score=79.59  Aligned_cols=61  Identities=7%  Similarity=-0.067  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhcC---CeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHhcCc
Q psy11689        224 QNVTQLFHRARLAA---PAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~---p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +..+..+++|...+   |.++++||+.+.++........+.+.   ..+.+.+.++|++..+..+++
T Consensus       810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADr  876 (916)
T 3pih_A          810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADH  876 (916)
T ss_dssp             HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred             HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCE
Confidence            44455677777655   57999999999999988877766554   347899999999877766554

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.69  E-value=8.6e-05  Score=70.57  Aligned_cols=44  Identities=20%  Similarity=0.180  Sum_probs=35.4

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .+.|-+...+.+.+.+..               +..++|+||+|+|||+|++.++++.+
T Consensus        13 ~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~   56 (350)
T 2qen_A           13 DIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP   56 (350)
T ss_dssp             GSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             hcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC
Confidence            577777777777776532               26899999999999999999998765

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.68  E-value=9.1e-05  Score=70.49  Aligned_cols=50  Identities=8%  Similarity=0.006  Sum_probs=36.6

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA  211 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~  211 (390)
                      .+.|-+...+.+.+ +.               . ..++|+||+|+|||+|++.++++.+..++++++
T Consensus        14 ~~~gR~~el~~L~~-l~---------------~-~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~   63 (357)
T 2fna_A           14 DFFDREKEIEKLKG-LR---------------A-PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL   63 (357)
T ss_dssp             GSCCCHHHHHHHHH-TC---------------S-SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             HhcChHHHHHHHHH-hc---------------C-CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence            56676666666655 32               1 479999999999999999999887654444444

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.68  E-value=3.5e-06  Score=77.34  Aligned_cols=78  Identities=17%  Similarity=0.218  Sum_probs=59.7

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCc--ccchHHHHH
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNE--EVELSENVQ   80 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~--~v~l~~~la   80 (390)
                      .++++++++||+++.+|+++++              +|||+ .+.+|. +.++|.+++..    ..+..  ++.+ +.++
T Consensus       143 ~~~~~vi~~tn~~~~ld~~l~~--------------~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~-~~l~  207 (262)
T 2qz4_A          143 TDHVIVLASTNRADILDGALMR--------------PGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYS-QRLA  207 (262)
T ss_dssp             TCCEEEEEEESCGGGGGSGGGS--------------TTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHH-HHHH
T ss_pred             CCCEEEEecCCChhhcCHHHhc--------------CCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHH-HHHH
Confidence            3578999999998887777777              99998 666666 46778888765    22332  3334 7899


Q ss_pred             HhhcCCccccccccccccchh
Q psy11689         81 REEEGIAGENLQRGGGEEGIE  101 (390)
Q Consensus        81 ~~t~G~~g~~l~~~~~ea~~~  101 (390)
                      +.+.|+++++|..++.++...
T Consensus       208 ~~~~g~~~~~l~~l~~~a~~~  228 (262)
T 2qz4_A          208 ELTPGFSGADIANICNEAALH  228 (262)
T ss_dssp             HTCTTCCHHHHHHHHHHHHTC
T ss_pred             HHCCCCCHHHHHHHHHHHHHH
Confidence            999999999999998877664

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*

Probab=97.68  E-value=2.3e-06  Score=65.05  Aligned_cols=48  Identities=21%  Similarity=0.294  Sum_probs=41.5

Q ss_pred             CCccCcccccc----ccCCcccchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689         56 APQGRETELPF----TKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        56 ~~~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      +.++|++||++    +++++++|+ +.||+.|+||||+||..+|.+|++....
T Consensus         2 d~~~R~~Il~~~l~~~~~~~~vdl-~~la~~t~G~SGADi~~l~~eA~~~a~~   53 (83)
T 3aji_B            2 DRRQKRLIFSTITSKMNLSEEVDL-EDYVARPDKISGADINSICQESGMLAVR   53 (83)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCCT-HHHHTSSCCCCHHHHHHHHHHHHHGGGT
T ss_pred             CHHHHHHHHHHHhCCCCCCcccCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            35789999987    556789999 9999999999999999999999987543

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.66  E-value=1.4e-05  Score=71.10  Aligned_cols=76  Identities=17%  Similarity=0.277  Sum_probs=43.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh--------hc-cchhccccccccCcch----------hhHHH--HHHHHHHHH--H
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH--------SV-YRVLAASAAQLYSPYV----------GEAEQ--NVTQLFHRA--R  234 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~--------~~-~~~~~i~~~~~~~~~~----------g~~~~--~i~~~f~~A--~  234 (390)
                      +...|++|+||||||+++...+..        .| .+++..+..++.....          .....  .....+.-+  .
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~   84 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP   84 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence            457899999999999998886433        33 4443333333322111          10000  011222221  2


Q ss_pred             hcCCeEEEEcCCCCCCChh
Q psy11689        235 LAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       235 ~~~p~il~lDEid~~l~~r  253 (390)
                      ....+||+|||+..+++.+
T Consensus        85 ~~~~~vliIDEAq~l~~~~  103 (199)
T 2r2a_A           85 ENIGSIVIVDEAQDVWPAR  103 (199)
T ss_dssp             GGTTCEEEETTGGGTSBCC
T ss_pred             ccCceEEEEEChhhhccCc
Confidence            2457899999999997544

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.63  E-value=0.00014  Score=65.74  Aligned_cols=28  Identities=32%  Similarity=0.447  Sum_probs=24.6

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      .++.++..++|+||||+|||+|+..+|.
T Consensus        18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           18 GGIPERNVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             TSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3678899999999999999999888863

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.61  E-value=0.00029  Score=66.84  Aligned_cols=75  Identities=21%  Similarity=0.173  Sum_probs=47.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhcccccccc--------------------CcchhhHHHHHHHHHH
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLY--------------------SPYVGEAEQNVTQLFH  231 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~--------------------~~~~g~~~~~i~~~f~  231 (390)
                      ..++..+++.||+|+||||++..+|....   ..+..+++....                    ....+.........+.
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~  180 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA  180 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence            45678899999999999999999996542   222222211100                    0011112222344667


Q ss_pred             HHHhcCCeEEEEcCCCCC
Q psy11689        232 RARLAAPAILFIDEIERT  249 (390)
Q Consensus       232 ~A~~~~p~il~lDEid~~  249 (390)
                      .+....|+++++|++...
T Consensus       181 ~a~~~~~dvvIiDtpg~~  198 (306)
T 1vma_A          181 HALARNKDVVIIDTAGRL  198 (306)
T ss_dssp             HHHHTTCSEEEEEECCCC
T ss_pred             HHHhcCCCEEEEECCCch
Confidence            778889999999999763

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.61  E-value=5.6e-05  Score=72.25  Aligned_cols=79  Identities=13%  Similarity=0.186  Sum_probs=51.0

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh---------ccchhccccccccC---------cc---------------h
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---------VYRVLAASAAQLYS---------PY---------------V  219 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---------~~~~~~i~~~~~~~---------~~---------------~  219 (390)
                      -+++++..++|+||||+|||+|+..+|...         +.++++++....+.         .+               .
T Consensus       102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~  181 (324)
T 2z43_A          102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA  181 (324)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence            367889999999999999999999998764         33445554433110         00               0


Q ss_pred             hhHH---HHHHHHHHHHHh-cCCeEEEEcCCCCCCC
Q psy11689        220 GEAE---QNVTQLFHRARL-AAPAILFIDEIERTYN  251 (390)
Q Consensus       220 g~~~---~~i~~~f~~A~~-~~p~il~lDEid~~l~  251 (390)
                      ...+   +.+..+...... ..+.+|+||.+..+..
T Consensus       182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~  217 (324)
T 2z43_A          182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR  217 (324)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence            0011   123334444455 7899999999998763

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.61  E-value=4.4e-05  Score=68.37  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=23.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .++..+.|.||+|+|||||+++++..
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            46888999999999999999999975

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.60  E-value=7.6e-05  Score=72.63  Aligned_cols=78  Identities=21%  Similarity=0.262  Sum_probs=50.5

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcc----------------hhhHHHHHHHHHHHHH
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPY----------------VGEAEQNVTQLFHRAR  234 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~----------------~g~~~~~i~~~f~~A~  234 (390)
                      +++++..++|+||||+|||+|+..+|...   +.++++++...-....                ....++.+..+.....
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~  149 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR  149 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence            56788999999999999999999998654   3455555443221111                0112222222322334


Q ss_pred             hcCCeEEEEcCCCCCCC
Q psy11689        235 LAAPAILFIDEIERTYN  251 (390)
Q Consensus       235 ~~~p~il~lDEid~~l~  251 (390)
                      ...+++||||.+..+..
T Consensus       150 ~~~~~lVVIDsl~~l~~  166 (366)
T 1xp8_A          150 SGAIDVVVVDSVAALTP  166 (366)
T ss_dssp             TTCCSEEEEECTTTCCC
T ss_pred             cCCCCEEEEeChHHhcc
Confidence            56799999999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.60  E-value=2.4e-05  Score=68.21  Aligned_cols=37  Identities=22%  Similarity=0.218  Sum_probs=29.8

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA  211 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~  211 (390)
                      +.++..+.|.||||||||||+++++...+...+.++.
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~   42 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS   42 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence            5678899999999999999999999876554444443

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.59  E-value=3.3e-05  Score=67.36  Aligned_cols=36  Identities=36%  Similarity=0.559  Sum_probs=30.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHh-hccchhccc
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAH-SVYRVLAAS  210 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~-~~~~~~~i~  210 (390)
                      ...+..++|+|+|||||||+++.++.. .|++++..+
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d   43 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG   43 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence            345678999999999999999999998 788776543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.59  E-value=3e-05  Score=67.31  Aligned_cols=33  Identities=27%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      +..++|+|||||||||+++.+|..++++++..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d   37 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD   37 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            567999999999999999999999998876543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.56  E-value=0.0001  Score=71.05  Aligned_cols=80  Identities=16%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh---------ccchhccccccccCc--------------------------
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---------VYRVLAASAAQLYSP--------------------------  217 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---------~~~~~~i~~~~~~~~--------------------------  217 (390)
                      -+++++..++|+||||+|||+|+..+|...         +..+++++....+..                          
T Consensus       117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~  196 (343)
T 1v5w_A          117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA  196 (343)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence            368889999999999999999999999763         334445544332110                          


Q ss_pred             c-hhhHHHHHHHHHHHHHh--cCCeEEEEcCCCCCCCh
Q psy11689        218 Y-VGEAEQNVTQLFHRARL--AAPAILFIDEIERTYNC  252 (390)
Q Consensus       218 ~-~g~~~~~i~~~f~~A~~--~~p~il~lDEid~~l~~  252 (390)
                      + ..+..+.+..+...+..  ..+.+|+||.+..+...
T Consensus       197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~  234 (343)
T 1v5w_A          197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV  234 (343)
T ss_dssp             CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence            0 00111122233344445  67899999999988743

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.55  E-value=0.0001  Score=71.42  Aligned_cols=78  Identities=18%  Similarity=0.296  Sum_probs=50.3

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcc----h-----------hhHHHHHHHHHH-HHH
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPY----V-----------GEAEQNVTQLFH-RAR  234 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~----~-----------g~~~~~i~~~f~-~A~  234 (390)
                      +++++..++|+||||+|||+|+..+|...   +.++++++........    .           ......+..++. .+.
T Consensus        59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~  138 (356)
T 1u94_A           59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR  138 (356)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence            56788999999999999999999998653   3455555543211100    0           001122222332 234


Q ss_pred             hcCCeEEEEcCCCCCCC
Q psy11689        235 LAAPAILFIDEIERTYN  251 (390)
Q Consensus       235 ~~~p~il~lDEid~~l~  251 (390)
                      ...+++||||.+..+..
T Consensus       139 ~~~~~lVVIDsl~~l~~  155 (356)
T 1u94_A          139 SGAVDVIVVDSVAALTP  155 (356)
T ss_dssp             HTCCSEEEEECGGGCCC
T ss_pred             ccCCCEEEEcCHHHhcc
Confidence            57899999999999985

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.55  E-value=3.9e-05  Score=66.84  Aligned_cols=33  Identities=30%  Similarity=0.433  Sum_probs=28.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ..+..++|.|+|||||||+++.++..++++++.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~   35 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS   35 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence            456789999999999999999999988876654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.54  E-value=0.00011  Score=68.31  Aligned_cols=28  Identities=29%  Similarity=0.259  Sum_probs=25.1

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ++.++..++|+||||+|||||+..++..
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999999853

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=97.50  E-value=0.00013  Score=71.46  Aligned_cols=81  Identities=21%  Similarity=0.242  Sum_probs=50.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcch-------------hhHHHHHHHHHHHHHhcCCeE
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYV-------------GEAEQNVTQLFHRARLAAPAI  240 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~-------------g~~~~~i~~~f~~A~~~~p~i  240 (390)
                      ....++++|++||||+++|+++...+.   .+|+.++|..+.....             |.... ..-.|..   ....+
T Consensus       159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~---a~~gt  234 (387)
T 1ny5_A          159 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFEL---ADGGT  234 (387)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHH---TTTSE
T ss_pred             CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceee---CCCcE
Confidence            345689999999999999999987654   6788888876432111             11000 0112333   23479


Q ss_pred             EEEcCCCCCCChhhHHHHHHHh
Q psy11689        241 LFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       241 l~lDEid~~l~~r~~~~~~~~~  262 (390)
                      |||||++.+ +........+.+
T Consensus       235 lfldei~~l-~~~~q~~Ll~~l  255 (387)
T 1ny5_A          235 LFLDEIGEL-SLEAQAKLLRVI  255 (387)
T ss_dssp             EEEESGGGC-CHHHHHHHHHHH
T ss_pred             EEEcChhhC-CHHHHHHHHHHH
Confidence            999999986 333334444443

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B

Probab=97.50  E-value=4.1e-06  Score=63.58  Aligned_cols=46  Identities=15%  Similarity=0.205  Sum_probs=32.8

Q ss_pred             ccCcccccc----ccCCcccchHHHHHHhhcCCccccccccccccchhhhc
Q psy11689         58 QGRETELPF----TKLNEEVELSENVQREEEGIAGENLQRGGGEEGIELRE  104 (390)
Q Consensus        58 ~~r~~~l~~----~~~~~~v~l~~~la~~t~G~~g~~l~~~~~ea~~~~~~  104 (390)
                      ++|++||++    +++++++|+ +.||+.|+||||+||..+|.+|++....
T Consensus         1 ~~R~~Il~~~l~~~~~~~~vdl-~~lA~~t~G~SGADi~~l~~eAa~~ai~   50 (82)
T 2dzn_B            1 MERRLIFGTIASKMSLAPEADL-DSLIIRNDSLSGAVIAAIMQEAGLRAVR   50 (82)
T ss_dssp             -------------CEECTTCCS-TTTTTSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCCcCCH-HHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            478899987    456789999 8899999999999999999999987554

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.47  E-value=6e-05  Score=65.17  Aligned_cols=34  Identities=35%  Similarity=0.454  Sum_probs=29.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      ..+..++|+|+||+||||+++.++..++++++..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~   42 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV   42 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence            3566799999999999999999999988777644

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.47  E-value=5.4e-05  Score=64.81  Aligned_cols=31  Identities=29%  Similarity=0.477  Sum_probs=26.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      +..+.|.|||||||||+++.+|...+.+++.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id   34 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD   34 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence            4679999999999999999999998876543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.45  E-value=0.00016  Score=66.41  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=31.5

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccc
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQL  214 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~  214 (390)
                      ...+..++|.|+|||||||+++.++...+..++.++...+
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~   68 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF   68 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence            3467889999999999999999999988754555555443

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.44  E-value=0.00022  Score=72.69  Aligned_cols=103  Identities=19%  Similarity=0.169  Sum_probs=68.2

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhcccccc--------------------------ccCcchh--h
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQ--------------------------LYSPYVG--E  221 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~--------------------------~~~~~~g--~  221 (390)
                      .++.++..++|.||||+|||||++.++...   |.+++++...+                          +......  .
T Consensus       276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS  355 (525)
T 1tf7_A          276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG  355 (525)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCC
Confidence            367899999999999999999999998543   22221111100                          0000011  2


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChh-----hHHHH---HHHhhcCCCcEEEeccCH
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCE-----YREQT---ADNAKKPRIPRTNGGYRE  276 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r-----~~~~~---~~~~~~~~~~~i~~~~~~  276 (390)
                      ..+..+.+++.+...+|.+|++| +.+.++..     .....   ...+...+.+.+..+|..
T Consensus       356 ~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          356 LEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            44667788899999999999999 88877765     33333   233344578888888764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.43  E-value=6.3e-05  Score=64.11  Aligned_cols=31  Identities=29%  Similarity=0.521  Sum_probs=27.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      .++|.|||||||||+++.++..++++++..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d   33 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS   33 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence            5899999999999999999999987765443

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.40  E-value=0.00032  Score=65.87  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=28.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA  211 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~  211 (390)
                      ..+..++|.|||||||||+++.++.+.+..++.+++
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence            456789999999999999999999887433344444

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.39  E-value=6.9e-05  Score=64.97  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=27.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      ..++|.|+|||||||+++.++..++++++..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D   34 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD   34 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence            35999999999999999999999998876543

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.39  E-value=0.00043  Score=62.33  Aligned_cols=28  Identities=21%  Similarity=0.416  Sum_probs=24.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .+++..+.|.||+|+|||||+++++...
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            3578899999999999999999999765

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.38  E-value=0.00085  Score=65.12  Aligned_cols=48  Identities=17%  Similarity=0.074  Sum_probs=37.4

Q ss_pred             cCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHHHhcC
Q psy11689        236 AAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       236 ~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i~~t~  283 (390)
                      ..|.++++||+.+.+|+.........+..   .+.+.+.++|.+.....++
T Consensus       302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d  352 (365)
T 3qf7_A          302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFD  352 (365)
T ss_dssp             TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence            68999999999999999888777665543   4678899999876544443

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.38  E-value=0.00093  Score=73.18  Aligned_cols=103  Identities=12%  Similarity=0.107  Sum_probs=62.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHH-----hhccchh----ccccc-cccCcchhh-----------HHHHHHHHHHHHHhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAA-----HSVYRVL----AASAA-QLYSPYVGE-----------AEQNVTQLFHRARLA  236 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~-----~~~~~~~----~i~~~-~~~~~~~g~-----------~~~~i~~~f~~A~~~  236 (390)
                      +..++|+||+|+||||++++++-     +.|..+.    .+... .++.. .|.           ...........+...
T Consensus       789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~r-ig~~d~~~~~~stf~~em~~~a~al~la~  867 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTR-LGASDRIMSGESTFFVELSETASILMHAT  867 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEE-CC---------CHHHHHHHHHHHHHHHCC
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHH-cCCHHHHhhchhhhHHHHHHHHHHHHhCC
Confidence            68899999999999999999952     2221000    00000 01100 010           001112344556678


Q ss_pred             CCeEEEEcCCCCCCChhhHH----HHHHHhhcC-CCcEEEeccCHHHHHh
Q psy11689        237 APAILFIDEIERTYNCEYRE----QTADNAKKP-RIPRTNGGYREQTADT  281 (390)
Q Consensus       237 ~p~il~lDEid~~l~~r~~~----~~~~~~~~~-~~~~i~~~~~~~~i~~  281 (390)
                      .|++|+|||+.+.++.....    .....+... +.+.+..+|....+..
T Consensus       868 ~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~  917 (1022)
T 2o8b_B          868 AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED  917 (1022)
T ss_dssp             TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred             CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence            99999999999999976532    233444433 7788999998766554

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.38  E-value=6.9e-05  Score=64.52  Aligned_cols=30  Identities=30%  Similarity=0.390  Sum_probs=26.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .++|.|||||||||+++.+|..++++++..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~   35 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS   35 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence            589999999999999999999998877643

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.37  E-value=0.0001  Score=63.36  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=27.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ++..++|.||||+||||+++.++...|..++.
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~   38 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD   38 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence            46789999999999999999999988765543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.36  E-value=7.1e-05  Score=64.85  Aligned_cols=33  Identities=24%  Similarity=0.513  Sum_probs=28.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .+..++|.|+|||||||+++.++...+++++..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~   35 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLST   35 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence            456799999999999999999999888766543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.35  E-value=0.00027  Score=65.23  Aligned_cols=36  Identities=25%  Similarity=0.355  Sum_probs=28.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh---hccchhccccc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH---SVYRVLAASAA  212 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~---~~~~~~~i~~~  212 (390)
                      .+..|+|.|+|||||||+++.++..   .|++++.++..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D   41 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD   41 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence            3567999999999999999999987   56666533433

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.34  E-value=0.0001  Score=64.99  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=28.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .+..++|.|+|||||||+++.++..++++++..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~   51 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST   51 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence            456799999999999999999999988776544

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.34  E-value=9.3e-05  Score=63.20  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=28.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      ....++|.|+|||||||+++.+|..++++++..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~   38 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDT   38 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            346799999999999999999999999887654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.33  E-value=0.00011  Score=64.91  Aligned_cols=32  Identities=16%  Similarity=0.320  Sum_probs=27.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .++..+.|.|||||||||++++++...|..++
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i   58 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA   58 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence            46788999999999999999999998875544

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.33  E-value=0.00029  Score=81.30  Aligned_cols=81  Identities=20%  Similarity=0.216  Sum_probs=56.2

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCcch----------------hhHHHHHHHHHHHH
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSPYV----------------GEAEQNVTQLFHRA  233 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~~~----------------g~~~~~i~~~f~~A  233 (390)
                      .+++++..++++||||||||+|+.+++.+.   |.++.+++..+......                ...+...+......
T Consensus      1076 ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~ 1155 (2050)
T 3cmu_A         1076 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1155 (2050)
T ss_dssp             SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred             CCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHH
Confidence            468899999999999999999999997543   45555555544332211                11233444445555


Q ss_pred             HhcCCeEEEEcCCCCCCChh
Q psy11689        234 RLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       234 ~~~~p~il~lDEid~~l~~r  253 (390)
                      +...|++|++|++..+....
T Consensus      1156 ~~~~~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A         1156 RSGAVDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp             HHTCCSEEEESCGGGCCCHH
T ss_pred             HhCCCCEEEECCcccccccc
Confidence            67789999999999986644

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.32  E-value=0.0001  Score=64.30  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=28.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ++..++|.|+|||||||+++.++..++++++.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~   39 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS   39 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence            56789999999999999999999998877654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.32  E-value=9.6e-05  Score=64.20  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      +..|+|.|+|||||||+++.++..++++++.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~   33 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS   33 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            5679999999999999999999988876653

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.32  E-value=0.0011  Score=63.53  Aligned_cols=51  Identities=12%  Similarity=-0.014  Sum_probs=37.0

Q ss_pred             HHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEeccCHHHH
Q psy11689        229 LFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGGYREQTA  279 (390)
Q Consensus       229 ~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~~~~~~i  279 (390)
                      +++++....|.++++||+.+.+|........+.+..   .+.+.+.++|.....
T Consensus       264 ~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~  317 (339)
T 3qkt_A          264 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELK  317 (339)
T ss_dssp             HHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGG
T ss_pred             HHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHH
Confidence            445566678999999999999999887766555433   345677788875443

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.31  E-value=0.00013  Score=67.68  Aligned_cols=28  Identities=29%  Similarity=0.453  Sum_probs=24.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ++..+++|+||||||||+++.++|+..+
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            3456899999999999999999998753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.30  E-value=0.00013  Score=64.32  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=27.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      +..++|.|+||+||||+++.++...++.++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~   48 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE   48 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence            5679999999999999999999998866654

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.30  E-value=0.00025  Score=75.32  Aligned_cols=99  Identities=12%  Similarity=0.048  Sum_probs=56.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh-----ccchh----cccc-ccccCc----------chhhHHHHHHHHHHHHH--h
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS-----VYRVL----AASA-AQLYSP----------YVGEAEQNVTQLFHRAR--L  235 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~-----~~~~~----~i~~-~~~~~~----------~~g~~~~~i~~~f~~A~--~  235 (390)
                      +..++|.||+|+||||++++++...     |..+.    .+.. .+++..          ..+...+.+  -+..+.  .
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~--~la~il~~a  653 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEME--EVALILKEA  653 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHH--HHHHHHHHC
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHH--HHHHHHHhc
Confidence            6789999999999999999998532     21100    0000 011110          000011111  122333  6


Q ss_pred             cCCeEEEEcCC---CCCCChhhH-HHHHHHhhcCCCcEEEeccCHHH
Q psy11689        236 AAPAILFIDEI---ERTYNCEYR-EQTADNAKKPRIPRTNGGYREQT  278 (390)
Q Consensus       236 ~~p~il~lDEi---d~~l~~r~~-~~~~~~~~~~~~~~i~~~~~~~~  278 (390)
                      ..|+++++||+   .+-+|.... ......+...+.+.+..+|....
T Consensus       654 ~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l  700 (765)
T 1ewq_A          654 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFEL  700 (765)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHH
T ss_pred             cCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            79999999999   555555433 34445554456778888887544

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.30  E-value=0.00011  Score=63.79  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=23.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +..++|.|+|||||||+++.++..++
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999887

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.30  E-value=0.00011  Score=65.65  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=28.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      ++..++|.|+|||||||+++.+|..++++++..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   35 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT   35 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence            467899999999999999999999988766543

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=97.28  E-value=0.00026  Score=84.06  Aligned_cols=67  Identities=21%  Similarity=0.256  Sum_probs=54.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                      ...+++++||+|||||++++++|+.+|.+++.++|.+.+..      +.+..+|.-+.... +++++||++++-
T Consensus       644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~G-aw~~~DE~nr~~  710 (2695)
T 4akg_A          644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQIG-AWGCFDEFNRLD  710 (2695)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHHT-CEEEEETTTSSC
T ss_pred             hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhcC-CEeeehhhhhcC
Confidence            45678999999999999999999999999999999875542      44566777665554 899999999854

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.28  E-value=0.00011  Score=63.00  Aligned_cols=30  Identities=30%  Similarity=0.428  Sum_probs=25.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHH-hhccchh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAA-HSVYRVL  207 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~-~~~~~~~  207 (390)
                      +..++|.|+|||||||+++.++. ..++.++
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i   32 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI   32 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence            35689999999999999999998 5665544

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.00035  Score=69.96  Aligned_cols=105  Identities=15%  Similarity=0.064  Sum_probs=67.3

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh----c-cchh----------c----c---------ccc-cccC------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----V-YRVL----------A----A---------SAA-QLYS------  216 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~----~-~~~~----------~----i---------~~~-~~~~------  216 (390)
                      ++.+.++..++|.||+|||||||++++++..    | .+++          .    .         +.. .++.      
T Consensus       132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~  211 (460)
T 2npi_A          132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSG  211 (460)
T ss_dssp             HHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSS
T ss_pred             ceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccC
Confidence            4556789999999999999999999998543    2 1010          0    0         000 0000      


Q ss_pred             ----c-------chh----------hHHHHHHHHHHHH--HhcCCeE----EEEcC-CCCCCChhhHHHHHHHhhcCCCc
Q psy11689        217 ----P-------YVG----------EAEQNVTQLFHRA--RLAAPAI----LFIDE-IERTYNCEYREQTADNAKKPRIP  268 (390)
Q Consensus       217 ----~-------~~g----------~~~~~i~~~f~~A--~~~~p~i----l~lDE-id~~l~~r~~~~~~~~~~~~~~~  268 (390)
                          .       +.|          ...+..+..+++|  ...+|.+    ++||| +.+.+|.. .....+.+.....+
T Consensus       212 ~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~t  290 (460)
T 2npi_A          212 ATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVN  290 (460)
T ss_dssp             CCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCC
T ss_pred             cchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCC
Confidence                0       000          0124445677777  8899999    99999 89988887 44444555555677


Q ss_pred             EEEeccCHH
Q psy11689        269 RTNGGYREQ  277 (390)
Q Consensus       269 ~i~~~~~~~  277 (390)
                      .+.+.|...
T Consensus       291 viiVth~~~  299 (460)
T 2npi_A          291 IMLVLCSET  299 (460)
T ss_dssp             EEEEECCSS
T ss_pred             EEEEEccCc
Confidence            788877643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.28  E-value=0.0001  Score=62.66  Aligned_cols=29  Identities=28%  Similarity=0.456  Sum_probs=25.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .++|.|||||||||+++.+ ...|++++.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~   31 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERGAKVIVM   31 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence            5899999999999999999 8888776643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.26  E-value=0.00014  Score=62.96  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=28.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .+..++|.|+|||||||+++.++..++++++..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~   37 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA   37 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence            456799999999999999999999988766543

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.26  E-value=0.00038  Score=66.09  Aligned_cols=78  Identities=17%  Similarity=0.158  Sum_probs=48.6

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh-----ccchhccccccccCc----------------chhhHHHHHHHHHH
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS-----VYRVLAASAAQLYSP----------------YVGEAEQNVTQLFH  231 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~-----~~~~~~i~~~~~~~~----------------~~g~~~~~i~~~f~  231 (390)
                      -|++++ .++|+||||+|||+|+-.++...     +..+++++..+-+..                .....++....+..
T Consensus        24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~  102 (333)
T 3io5_A           24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN  102 (333)
T ss_dssp             CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred             CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence            356777 79999999999999988876543     344555655432211                01112222012222


Q ss_pred             H---HHhcCCeEEEEcCCCCCCC
Q psy11689        232 R---ARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       232 ~---A~~~~p~il~lDEid~~l~  251 (390)
                      .   ....+|++|++|-+.++..
T Consensus       103 ~l~~i~~~~~~lvVIDSI~aL~~  125 (333)
T 3io5_A          103 QLDAIERGEKVVVFIDSLGNLAS  125 (333)
T ss_dssp             HHHTCCTTCCEEEEEECSTTCBC
T ss_pred             HHHHhhccCceEEEEeccccccc
Confidence            2   2456899999999999974

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.25  E-value=0.00012  Score=67.29  Aligned_cols=31  Identities=29%  Similarity=0.445  Sum_probs=27.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      .++|.||||||||||++.+|...+.+++..+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D   33 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALD   33 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence            4899999999999999999999887776543

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.25  E-value=0.00013  Score=62.31  Aligned_cols=31  Identities=29%  Similarity=0.513  Sum_probs=27.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      ..++|.|+|||||||+++.++..++++++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~   33 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDT   33 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence            3589999999999999999999998876643

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.24  E-value=0.00012  Score=65.61  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .+..++|.|+|||||||+++.+|..++++++..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   36 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLST   36 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence            456799999999999999999999998776644

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.24  E-value=0.00013  Score=65.76  Aligned_cols=33  Identities=18%  Similarity=0.385  Sum_probs=27.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ..+..++|.|+|||||||+++.+|..++++++.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~   37 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS   37 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence            356789999999999999999999998876654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.24  E-value=0.00019  Score=61.32  Aligned_cols=31  Identities=29%  Similarity=0.352  Sum_probs=28.2

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++.+.++..+.|.||+|+|||||+++++...
T Consensus        27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            5567889999999999999999999999876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.23  E-value=0.00014  Score=65.07  Aligned_cols=32  Identities=13%  Similarity=0.313  Sum_probs=27.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .+..++|.|||||||||+++.+|..++++++.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~   35 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS   35 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence            45679999999999999999999998876554

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.22  E-value=0.00014  Score=63.54  Aligned_cols=32  Identities=28%  Similarity=0.383  Sum_probs=27.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .+..++|.|+|||||||+++.++..++++++.
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~   42 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS   42 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence            35679999999999999999999998876654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.19  E-value=0.0001  Score=67.83  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=28.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      +..+.|.|++||||||+++.+|..++++++..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~   79 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC   79 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence            78899999999999999999999998877643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.19  E-value=0.00077  Score=68.64  Aligned_cols=105  Identities=13%  Similarity=0.119  Sum_probs=60.6

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHH--HHhhc--cchhcccccc------------------------ccC---------
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTL--AAHSV--YRVLAASAAQ------------------------LYS---------  216 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~ai--a~~~~--~~~~~i~~~~------------------------~~~---------  216 (390)
                      ++++++.++|.||||||||||++++  +....  -..++++..+                        +..         
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~  114 (525)
T 1tf7_A           35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG  114 (525)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence            5678999999999999999999994  32211  0111111100                        000         


Q ss_pred             -cchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCC-----hhhHHHHHH---HhhcCCCcEEEeccCHHH
Q psy11689        217 -PYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYN-----CEYREQTAD---NAKKPRIPRTNGGYREQT  278 (390)
Q Consensus       217 -~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~-----~r~~~~~~~---~~~~~~~~~i~~~~~~~~  278 (390)
                       .....  ...............+|.+|+|||+.+..+     .........   .+...+.+.+..+|+...
T Consensus       115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~  187 (525)
T 1tf7_A          115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEE  187 (525)
T ss_dssp             CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred             hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence             00000  112233344444567899999999998763     333333333   333347888999988654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.19  E-value=0.0002  Score=64.51  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=29.1

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      ....++.++|.||||+||+|.++.|+...+++.+
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI   58 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL   58 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence            3456778999999999999999999999887654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.18  E-value=0.00012  Score=63.05  Aligned_cols=31  Identities=26%  Similarity=0.273  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .+..++|.|+|||||||+++.++..++.+++
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            3567999999999999999999999887766

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.18  E-value=0.00068  Score=72.38  Aligned_cols=100  Identities=14%  Similarity=0.149  Sum_probs=57.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHh-----hccchh----cccc-ccccCcc---------hh--hHH-HHHHHHHHHH
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAH-----SVYRVL----AASA-AQLYSPY---------VG--EAE-QNVTQLFHRA  233 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~-----~~~~~~----~i~~-~~~~~~~---------~g--~~~-~~i~~~f~~A  233 (390)
                      .++..++|.||+|+||||++++++..     .|..+.    .+.. .+++...         ..  ..+ ..+..++  .
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il--~  682 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANIL--H  682 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHH--H
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHH--H
Confidence            45678999999999999999999853     221110    0000 0111100         00  011 1122222  2


Q ss_pred             HhcCCeEEEEcCCCCCCChhhHHH----HHHHhhc-CCCcEEEeccCHH
Q psy11689        234 RLAAPAILFIDEIERTYNCEYREQ----TADNAKK-PRIPRTNGGYREQ  277 (390)
Q Consensus       234 ~~~~p~il~lDEid~~l~~r~~~~----~~~~~~~-~~~~~i~~~~~~~  277 (390)
                      ...+|++|++||+.+..++.....    ....+.. .+.+.+..+|...
T Consensus       683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e  731 (800)
T 1wb9_A          683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE  731 (800)
T ss_dssp             HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH
Confidence            367899999999988777654332    3344444 4778888888753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.18  E-value=0.00051  Score=66.59  Aligned_cols=77  Identities=18%  Similarity=0.302  Sum_probs=50.1

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc--hhcccc-ccc-----cC--cchh-h-------HHHHHHHHHHHH
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR--VLAASA-AQL-----YS--PYVG-E-------AEQNVTQLFHRA  233 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~--~~~i~~-~~~-----~~--~~~g-~-------~~~~i~~~f~~A  233 (390)
                      ++.+.++..++|.||+|+|||||+++++......  .+.+.. .++     ..  .+.. +       ....++..+..+
T Consensus       169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~  248 (361)
T 2gza_A          169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSC  248 (361)
T ss_dssp             HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHH
T ss_pred             HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHH
Confidence            4556789999999999999999999999765321  122221 111     00  0111 1       112356777788


Q ss_pred             HhcCCeEEEEcCCCC
Q psy11689        234 RLAAPAILFIDEIER  248 (390)
Q Consensus       234 ~~~~p~il~lDEid~  248 (390)
                      ....|++++++|+..
T Consensus       249 l~~~pd~~l~~e~r~  263 (361)
T 2gza_A          249 LRMKPTRILLAELRG  263 (361)
T ss_dssp             TTSCCSEEEESCCCS
T ss_pred             HhcCCCEEEEcCchH
Confidence            888999999999875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.16  E-value=0.00019  Score=63.18  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=28.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .+..++|.|+|||||||+++.++...+++++..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~   46 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA   46 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence            456799999999999999999999888766543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.16  E-value=0.00028  Score=67.14  Aligned_cols=29  Identities=14%  Similarity=0.121  Sum_probs=26.0

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -+++++..++|+||||+|||+|+..+|..
T Consensus        93 GGl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            36788999999999999999999999865

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.16  E-value=0.00024  Score=62.42  Aligned_cols=28  Identities=36%  Similarity=0.521  Sum_probs=24.5

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ..++..+.|.||+|||||||++.++...
T Consensus         4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            4 MNKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4567889999999999999999999874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.16  E-value=0.00019  Score=61.06  Aligned_cols=29  Identities=17%  Similarity=0.079  Sum_probs=26.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .++|.|+|||||||+++.++..++++++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~   30 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD   30 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            48999999999999999999998877664

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.15  E-value=0.00074  Score=66.77  Aligned_cols=73  Identities=14%  Similarity=0.181  Sum_probs=44.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccc---hhccccc-ccc-Cc-----chhhHHHHHHHHHHHHHhcCCeEEEEcC
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYR---VLAASAA-QLY-SP-----YVGEAEQNVTQLFHRARLAAPAILFIDE  245 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~---~~~i~~~-~~~-~~-----~~g~~~~~i~~~f~~A~~~~p~il~lDE  245 (390)
                      .++..++|.||+|+||||++++++......   ++.+.-+ +.. ..     ............+..+....|+++++.|
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE  244 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE  244 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence            356779999999999999999999876422   2221111 110 00     0011111234455566778999999999


Q ss_pred             CCC
Q psy11689        246 IER  248 (390)
Q Consensus       246 id~  248 (390)
                      +..
T Consensus       245 iRd  247 (418)
T 1p9r_A          245 IRD  247 (418)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.15  E-value=0.00017  Score=64.15  Aligned_cols=30  Identities=17%  Similarity=0.295  Sum_probs=25.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .++|.|||||||||+++.++...+++++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence            488999999999999999999888766543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.15  E-value=0.00021  Score=64.64  Aligned_cols=33  Identities=33%  Similarity=0.412  Sum_probs=28.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .+..++|.|+|||||||+++.+|..++++++..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   47 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT   47 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence            456799999999999999999999998776543

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.15  E-value=0.0002  Score=65.49  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=29.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .++..++|.|||||||||+++.++...+++++..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~   60 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST   60 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            3677899999999999999999999888766543

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.15  E-value=0.0005  Score=62.10  Aligned_cols=96  Identities=13%  Similarity=0.040  Sum_probs=54.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccc-------cccCcchhhH-----HHHHHHHHHHHHh----cC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAA-------QLYSPYVGEA-----EQNVTQLFHRARL----AA  237 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~-------~~~~~~~g~~-----~~~i~~~f~~A~~----~~  237 (390)
                      ++.-++++||+|+||||++-.++...   +..++.+...       .+.+. .|-.     ......+++.+..    ..
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~   89 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE   89 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence            56778999999999999988887654   3333333211       11111 1100     0112235555544    35


Q ss_pred             CeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEEEeccC
Q psy11689        238 PAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYR  275 (390)
Q Consensus       238 p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~~  275 (390)
                      +++|+|||+..+- ...- .....+...++..+..+++
T Consensus        90 ~dvViIDEaQ~l~-~~~v-e~l~~L~~~gi~Vil~Gl~  125 (223)
T 2b8t_A           90 TKVIGIDEVQFFD-DRIC-EVANILAENGFVVIISGLD  125 (223)
T ss_dssp             CCEEEECSGGGSC-THHH-HHHHHHHHTTCEEEEECCS
T ss_pred             CCEEEEecCccCc-HHHH-HHHHHHHhCCCeEEEEecc
Confidence            8999999998643 3221 2234444457777777763

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.14  E-value=0.00019  Score=63.88  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=25.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .++|.|||||||||+++.++...+++++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence            488999999999999999999988766543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.13  E-value=0.00023  Score=63.84  Aligned_cols=31  Identities=23%  Similarity=0.428  Sum_probs=24.5

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++.+.++..+.|.||+|+|||||++.++...
T Consensus        17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4567789999999999999999999999865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.13  E-value=0.00026  Score=62.16  Aligned_cols=28  Identities=25%  Similarity=0.342  Sum_probs=24.9

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +.++..+.|.|||||||||+++.++...
T Consensus         3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4678889999999999999999999876

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.13  E-value=0.00023  Score=61.43  Aligned_cols=36  Identities=17%  Similarity=0.129  Sum_probs=29.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh---ccchhcccc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASA  211 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~  211 (390)
                      .++..+.|.|++||||||+++.++..+   |++++.++.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~   41 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG   41 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence            357789999999999999999999886   777765554

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.12  E-value=0.00068  Score=65.36  Aligned_cols=30  Identities=20%  Similarity=0.357  Sum_probs=27.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ..++|.||||+||||+++++|..++++++.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~   54 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINEKYHT   54 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence            459999999999999999999999988855

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.12  E-value=0.00095  Score=63.60  Aligned_cols=34  Identities=29%  Similarity=0.501  Sum_probs=29.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA  211 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~  211 (390)
                      +..++|+||+|||||+|++.+|...+..++..+.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds   38 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS   38 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence            3579999999999999999999999877776654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.09  E-value=0.00086  Score=59.53  Aligned_cols=29  Identities=24%  Similarity=0.232  Sum_probs=25.6

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..++..++|.|+||+||||+++.++..++
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45678899999999999999999998765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.09  E-value=0.00026  Score=63.32  Aligned_cols=30  Identities=27%  Similarity=0.484  Sum_probs=26.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      +..+.|.||+||||||+++.++...+++++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~   34 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLL   34 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence            357999999999999999999998876554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.08  E-value=0.00097  Score=66.13  Aligned_cols=74  Identities=22%  Similarity=0.152  Sum_probs=46.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccc-------------------cCcchh-hHHHHHHHHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQL-------------------YSPYVG-EAEQNVTQLFHRA  233 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~-------------------~~~~~g-~~~~~i~~~f~~A  233 (390)
                      ++..+++.||+|+||||++..+|..+   |..+..+++...                   .....+ .........+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            47789999999999999999998554   223322222110                   000001 1222334556666


Q ss_pred             HhcCCeEEEEcCCCCCC
Q psy11689        234 RLAAPAILFIDEIERTY  250 (390)
Q Consensus       234 ~~~~p~il~lDEid~~l  250 (390)
                      ....++++++|.+..+-
T Consensus       176 ~~~~~DvvIIDTaGr~~  192 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHG  192 (433)
T ss_dssp             TTTTCSEEEEEECCCSS
T ss_pred             HhcCCCEEEEECCCCcc
Confidence            66789999999998654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.08  E-value=0.00059  Score=73.05  Aligned_cols=59  Identities=7%  Similarity=-0.055  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhcC---CeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHhcC
Q psy11689        225 NVTQLFHRARLAA---PAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       225 ~i~~~f~~A~~~~---p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~t~  283 (390)
                      ..+..++++...+   |.+++|||+.+.+|..........+   ...+.+.+.++|.+..+..++
T Consensus       736 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aD  800 (842)
T 2vf7_A          736 AQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASD  800 (842)
T ss_dssp             HHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCS
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCC
Confidence            3345666777775   7999999999999998877765554   345788999999876664444

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.06  E-value=0.00036  Score=63.61  Aligned_cols=34  Identities=12%  Similarity=0.061  Sum_probs=26.9

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR  205 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~  205 (390)
                      ++.+.++..+.|.||+|+|||||++.++...|..
T Consensus        19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            3456778889999999999999999999877643

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.06  E-value=0.00032  Score=61.78  Aligned_cols=28  Identities=25%  Similarity=0.217  Sum_probs=25.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .++..+.|.||+||||||++++++..++
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5788899999999999999999998874

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.05  E-value=0.0018  Score=61.25  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++..+.|.||+||||||+++.+|...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57889999999999999999999654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.04  E-value=0.00028  Score=71.67  Aligned_cols=74  Identities=16%  Similarity=0.297  Sum_probs=47.6

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhcc--chhcccccc-ccC---cc--------hhhHHHHHHHHHHHHHhcCCeE
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAASAAQ-LYS---PY--------VGEAEQNVTQLFHRARLAAPAI  240 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~~~~-~~~---~~--------~g~~~~~i~~~f~~A~~~~p~i  240 (390)
                      +..+..++|.||+||||||++++++.....  ..+.+..+. +..   .+        .+...-.+...+..+..+.|++
T Consensus       257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~  336 (511)
T 2oap_1          257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDY  336 (511)
T ss_dssp             HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred             HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence            457788999999999999999999876542  122222211 110   00        0111123455666777889999


Q ss_pred             EEEcCCCC
Q psy11689        241 LFIDEIER  248 (390)
Q Consensus       241 l~lDEid~  248 (390)
                      +++.|+..
T Consensus       337 iivgEir~  344 (511)
T 2oap_1          337 IIVGEVRG  344 (511)
T ss_dssp             EEESCCCS
T ss_pred             EEeCCcCH
Confidence            99999864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.04  E-value=0.00032  Score=63.88  Aligned_cols=29  Identities=24%  Similarity=0.448  Sum_probs=25.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYR  205 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~  205 (390)
                      .+..+.|.|||||||||+++.++...|..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~   54 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ   54 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            46789999999999999999999887754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.03  E-value=0.00039  Score=60.99  Aligned_cols=33  Identities=12%  Similarity=0.054  Sum_probs=28.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh-ccchhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS-VYRVLAA  209 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~-~~~~~~i  209 (390)
                      .+..+.|.|++||||||+++.++..+ |++++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~   36 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYL   36 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence            46779999999999999999999988 5666544

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.03  E-value=0.0036  Score=62.13  Aligned_cols=75  Identities=21%  Similarity=0.235  Sum_probs=49.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccc-------------------cCc-chhhHHHHHHHHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQL-------------------YSP-YVGEAEQNVTQLFHRA  233 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~-------------------~~~-~~g~~~~~i~~~f~~A  233 (390)
                      +|..++++|++|+||||++..+|..+   |..+..+++...                   ... ........+...+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            47789999999999999999998654   333322222111                   010 1112334456677788


Q ss_pred             HhcCCeEEEEcCCCCCCC
Q psy11689        234 RLAAPAILFIDEIERTYN  251 (390)
Q Consensus       234 ~~~~p~il~lDEid~~l~  251 (390)
                      ....++++++|.+..+-.
T Consensus       179 ~~~~~DvVIIDTaGrl~~  196 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKE  196 (443)
T ss_dssp             HHTTCSEEEEECCCCSSC
T ss_pred             HhCCCCEEEEECCCcccc
Confidence            887899999999976543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.02  E-value=0.00034  Score=61.74  Aligned_cols=33  Identities=18%  Similarity=0.099  Sum_probs=28.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .+..+.|.|+|||||||+++.++..++.+.+.+
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~   41 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV   41 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence            467899999999999999999999887665443

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.02  E-value=0.00094  Score=76.14  Aligned_cols=80  Identities=19%  Similarity=0.218  Sum_probs=61.8

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchh----------------ccccccccCcchhhHHHHHHHHHHHHH
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVL----------------AASAAQLYSPYVGEAEQNVTQLFHRAR  234 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~----------------~i~~~~~~~~~~g~~~~~i~~~f~~A~  234 (390)
                      |++.++.+.+|||+|||||||+-.++.+.   |-.+.                -++..+++..++...++.+..+...++
T Consensus      1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A         1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence            45677889999999999999988776432   22222                244445555567777889988999999


Q ss_pred             hcCCeEEEEcCCCCCCChh
Q psy11689        235 LAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       235 ~~~p~il~lDEid~~l~~r  253 (390)
                      ...|++|++|.+.++.+..
T Consensus      1507 s~~~~~vvvDsv~al~~~~ 1525 (1706)
T 3cmw_A         1507 SGAVDVIVVDSVAALTPKA 1525 (1706)
T ss_dssp             HTCCSEEEESCSTTCCCTT
T ss_pred             cCCCCEEEEccHHhCCccc
Confidence            9999999999999999764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.00  E-value=0.00031  Score=62.67  Aligned_cols=28  Identities=25%  Similarity=0.515  Sum_probs=25.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .++|.||||+||+|.++.||...+++.+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i   29 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI   29 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence            4789999999999999999999887654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.00  E-value=0.00037  Score=61.60  Aligned_cols=33  Identities=27%  Similarity=0.233  Sum_probs=27.7

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhh-ccchh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHS-VYRVL  207 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~-~~~~~  207 (390)
                      +.++..+.|.|+|||||||+++.++... ++.++
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i   51 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI   51 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence            4567789999999999999999999887 55554

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.00  E-value=0.0004  Score=61.58  Aligned_cols=29  Identities=24%  Similarity=0.418  Sum_probs=24.6

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .+.+++.+.|.||+|+|||||+++++...
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            56789999999999999999999999876

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.99  E-value=0.00041  Score=61.39  Aligned_cols=32  Identities=34%  Similarity=0.374  Sum_probs=26.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc--cchh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV--YRVL  207 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~--~~~~  207 (390)
                      .++..+.|.||+|||||||++.++...+  +.++
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v   37 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALL   37 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            4677899999999999999999999876  4443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.99  E-value=0.0014  Score=70.79  Aligned_cols=60  Identities=8%  Similarity=-0.060  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhcC---CeEEEEcCCCCCCChhhHHHHHHHhh---cCCCcEEEeccCHHHHHhcC
Q psy11689        224 QNVTQLFHRARLAA---PAILFIDEIERTYNCEYREQTADNAK---KPRIPRTNGGYREQTADTAN  283 (390)
Q Consensus       224 ~~i~~~f~~A~~~~---p~il~lDEid~~l~~r~~~~~~~~~~---~~~~~~i~~~~~~~~i~~t~  283 (390)
                      +..+..++++...+   |.+++|||+.+.+|........+.+.   ..+.+.+.++|.+..+..++
T Consensus       850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aD  915 (972)
T 2r6f_A          850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTAD  915 (972)
T ss_dssp             HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCS
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCC
Confidence            33345666777765   59999999999999988777665553   34788899999876554333

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.99  E-value=0.00039  Score=63.86  Aligned_cols=32  Identities=31%  Similarity=0.479  Sum_probs=27.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .++..+.|.||+||||||+++.+|..+|+.++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~   56 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL   56 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence            35678999999999999999999998886554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.98  E-value=0.00046  Score=59.81  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++..+.|.||+|+|||||++.++...
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            56789999999999999999999865

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.98  E-value=0.00028  Score=62.06  Aligned_cols=29  Identities=31%  Similarity=0.379  Sum_probs=25.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .+.|.|++||||||+++.++. .|++++..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~   31 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA   31 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence            589999999999999999999 77766543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.97  E-value=0.00043  Score=65.53  Aligned_cols=31  Identities=29%  Similarity=0.470  Sum_probs=28.5

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++.++++..+.|+||+|+|||||+++|++..
T Consensus       120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            5678999999999999999999999999775

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.97  E-value=0.00032  Score=62.41  Aligned_cols=30  Identities=17%  Similarity=0.249  Sum_probs=26.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .++|.|+|||||||+++.++...+++++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~   31 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST   31 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            489999999999999999999888766544

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.95  E-value=0.00033  Score=60.59  Aligned_cols=24  Identities=17%  Similarity=0.223  Sum_probs=22.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .++|.|+|||||||+++.++..++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999998876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.94  E-value=0.00047  Score=60.88  Aligned_cols=32  Identities=19%  Similarity=0.091  Sum_probs=27.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .+..+.|.|+|||||||+++.++..++...+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~   39 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHR   39 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence            56789999999999999999999987654443

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.91  E-value=0.00044  Score=60.44  Aligned_cols=28  Identities=18%  Similarity=0.494  Sum_probs=25.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .+.|.|++||||||+++.++..++..++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~   29 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIF   29 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence            4889999999999999999999887654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.90  E-value=0.0048  Score=62.03  Aligned_cols=30  Identities=30%  Similarity=0.338  Sum_probs=26.4

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +.+..+..++|.||+|+|||||+++||...
T Consensus       288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          288 VEGKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            456778899999999999999999999764

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.90  E-value=0.00014  Score=70.47  Aligned_cols=76  Identities=17%  Similarity=0.237  Sum_probs=58.5

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc--c--cC-CcccchHHHHHHh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF--T--KL-NEEVELSENVQRE   82 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~--~--~~-~~~v~l~~~la~~   82 (390)
                      .++++|++||+++.+|+++++                ||. .+.+|. +.++|.+++..  .  .. -++.++ +.|++.
T Consensus       220 ~~v~vI~atn~~~~l~~~l~~----------------Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l-~~la~~  282 (357)
T 3d8b_A          220 DRILVVGATNRPQEIDEAARR----------------RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI-EQIVQQ  282 (357)
T ss_dssp             CCEEEEEEESCGGGBCHHHHT----------------TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHH-HHHHHH
T ss_pred             CCEEEEEecCChhhCCHHHHh----------------hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHH-HHHHHH
Confidence            478999999999998888876                777 556665 36778888765  1  11 134566 889999


Q ss_pred             hcCCccccccccccccchhh
Q psy11689         83 EEGIAGENLQRGGGEEGIEL  102 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~  102 (390)
                      |.||+|+++..+|.+++...
T Consensus       283 t~G~s~~dl~~l~~~a~~~~  302 (357)
T 3d8b_A          283 SDAFSGADMTQLCREASLGP  302 (357)
T ss_dssp             TTTCCHHHHHHHHHHHHTHH
T ss_pred             cCCCCHHHHHHHHHHHHHHH
Confidence            99999999999998887653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.89  E-value=0.00047  Score=60.33  Aligned_cols=31  Identities=29%  Similarity=0.356  Sum_probs=26.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .+..+.|.|++||||||+++.++.. |++++.
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id   37 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLD   37 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence            4567999999999999999999998 766653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.88  E-value=0.00045  Score=59.88  Aligned_cols=31  Identities=26%  Similarity=0.144  Sum_probs=26.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhh---ccchhccc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHS---VYRVLAAS  210 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~---~~~~~~i~  210 (390)
                      .+.|.|+|||||||+++.++..+   |++++..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            47899999999999999999987   67666543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.88  E-value=0.0011  Score=62.63  Aligned_cols=31  Identities=32%  Similarity=0.440  Sum_probs=26.7

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++.+.+|..++|.||+|+||||+++.+|...
T Consensus        94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             CCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3446788999999999999999999999664

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.86  E-value=0.00051  Score=60.90  Aligned_cols=28  Identities=36%  Similarity=0.511  Sum_probs=25.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .++..+.|.||+|+|||||+++++....
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5788999999999999999999998764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.86  E-value=0.00061  Score=59.92  Aligned_cols=27  Identities=22%  Similarity=0.096  Sum_probs=24.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      +..++|.|+|||||||+++.++..++.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            567999999999999999999998765

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.86  E-value=0.00054  Score=62.30  Aligned_cols=31  Identities=32%  Similarity=0.348  Sum_probs=26.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .+..+.|.|||||||||+++.+|..++++++
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~   38 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYL   38 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence            3567999999999999999999999887654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.86  E-value=0.00039  Score=61.30  Aligned_cols=27  Identities=19%  Similarity=0.169  Sum_probs=23.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .+.|.||+||||||+++.++. +|++++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~-lg~~~i   30 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD-LGVPLV   30 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence            588999999999999999987 676654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.84  E-value=0.00036  Score=62.93  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHH-Hhh
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLA-AHS  202 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia-~~~  202 (390)
                      ++.+.++..+.|.||+|||||||++.++ ...
T Consensus        21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4556788999999999999999999999 664

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.84  E-value=0.00068  Score=60.20  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=24.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .++..+.|.||+|+|||||++.++....
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4677899999999999999999998764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.84  E-value=0.00055  Score=60.36  Aligned_cols=26  Identities=31%  Similarity=0.683  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +++.+.|.||+|+|||||++.++...
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            57789999999999999999998754

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.84  E-value=0.00046  Score=61.99  Aligned_cols=30  Identities=20%  Similarity=0.386  Sum_probs=25.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .++|.|+|||||||+++.++..++++++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~   31 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES   31 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence            489999999999999999999888765543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.82  E-value=0.0045  Score=58.19  Aligned_cols=76  Identities=25%  Similarity=0.259  Sum_probs=45.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc---cchhcccccc--------c--------cCcc---hh-hHHHHHHHHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQ--------L--------YSPY---VG-EAEQNVTQLFHRA  233 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~--------~--------~~~~---~g-~~~~~i~~~f~~A  233 (390)
                      ++..+.++|++|+||||++..+|....   ..+..++..-        +        +.-+   .+ ......+.+++.+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            677899999999999999999995532   2221111100        0        0000   01 1112235567777


Q ss_pred             HhcCCeEEEEcCCCC-CCCh
Q psy11689        234 RLAAPAILFIDEIER-TYNC  252 (390)
Q Consensus       234 ~~~~p~il~lDEid~-~l~~  252 (390)
                      ....+++|++|++-. ..+.
T Consensus       177 ~~~~~D~viiDtpp~~~~d~  196 (295)
T 1ls1_A          177 RLEARDLILVDTAGRLQIDE  196 (295)
T ss_dssp             HHHTCCEEEEECCCCSSCCH
T ss_pred             HhCCCCEEEEeCCCCccccH
Confidence            667899999999944 3443

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.80  E-value=0.0012  Score=59.60  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      -.+++.|+||+||||++-.+|..+
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHH
Confidence            469999999999999998888654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.79  E-value=0.0015  Score=64.45  Aligned_cols=34  Identities=21%  Similarity=0.457  Sum_probs=28.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      ..+.-++|+|+|||||||+++.++...++.++..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~  289 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR  289 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence            3467799999999999999999999888766544

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.79  E-value=0.00013  Score=73.14  Aligned_cols=67  Identities=10%  Similarity=0.106  Sum_probs=39.4

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-----eeeCCC-CCccCccccccccCCcccchHHHHHHhh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-----VIDLPT-APQGRETELPFTKLNEEVELSENVQREE   83 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-----~i~ip~-~~~~r~~~l~~~~~~~~v~l~~~la~~t   83 (390)
                      +-|+++++||+++.+|++++|              ||||+     .+++|. +.++|++|+.+..   ..++ +.+++.|
T Consensus       189 ~~v~i~attn~~~~ld~a~~r--------------~~rfd~~~~~~v~~p~~~~~~R~~il~~~~---~~dl-~~~a~~t  250 (456)
T 2c9o_A          189 DVIYIEANSGAVKRQGRCDTY--------------ATEFDLEAEEYVPLPKGDVHKKKEIIQDVT---LHDL-DVANARP  250 (456)
T ss_dssp             EEEEEETTTCCEEEEEEETTS--------------CCTTSCSSSSEECCCCSCSEEEEEEEEEEE---HHHH-HHTC---
T ss_pred             CEEEEEcCCCCcccCChhhcC--------------CcccCcceeEecCCCchhHHHHHHHHHHHH---HHHH-HHHHHhC
Confidence            346666999999999988888              99998     445555 3567889988632   2367 8899999


Q ss_pred             cCCcccccccccc
Q psy11689         84 EGIAGENLQRGGG   96 (390)
Q Consensus        84 ~G~~g~~l~~~~~   96 (390)
                      +|  |+|+.++|.
T Consensus       251 ~g--gadl~~l~~  261 (456)
T 2c9o_A          251 QG--GQDILSMMG  261 (456)
T ss_dssp             -------------
T ss_pred             CC--hhHHHHHHh
Confidence            99  999998873

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.78  E-value=0.00078  Score=59.47  Aligned_cols=28  Identities=18%  Similarity=0.439  Sum_probs=25.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .++..++|.||||+||||+++.++....
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            4678899999999999999999998763

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.77  E-value=0.00057  Score=60.21  Aligned_cols=31  Identities=19%  Similarity=0.147  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ...+.|+|++||||||+++.++..+|++++.
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid   42 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVN   42 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence            4568999999999999999999988877764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.77  E-value=0.00021  Score=66.76  Aligned_cols=77  Identities=17%  Similarity=0.180  Sum_probs=57.4

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc--cc--C-CcccchHHHHHHh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF--TK--L-NEEVELSENVQRE   82 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~--~~--~-~~~v~l~~~la~~   82 (390)
                      .+++++++||+++.+|+++++                ||+ .+.+|. +.++|..++..  .+  . -++.++ +.+++.
T Consensus       158 ~~v~vi~~tn~~~~l~~~l~~----------------R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~-~~la~~  220 (297)
T 3b9p_A          158 DRIVVLAATNRPQELDEAALR----------------RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEAL-RRLAKI  220 (297)
T ss_dssp             -CEEEEEEESCGGGBCHHHHH----------------HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHH-HHHHHH
T ss_pred             CcEEEEeecCChhhCCHHHHh----------------hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHH-HHHHHH
Confidence            569999999999999998886                565 455555 36777777754  11  1 134456 889999


Q ss_pred             hcCCccccccccccccchhhh
Q psy11689         83 EEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      |.|++|++|..+|.+++....
T Consensus       221 ~~g~~~~~l~~l~~~a~~~a~  241 (297)
T 3b9p_A          221 TDGYSGSDLTALAKDAALEPI  241 (297)
T ss_dssp             TTTCCHHHHHHHHHHHTTHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999988877643

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.76  E-value=0.00078  Score=64.51  Aligned_cols=35  Identities=34%  Similarity=0.442  Sum_probs=29.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA  211 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~  211 (390)
                      .+..++|.||+|||||+|+..+|..++..++..+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds   73 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK   73 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence            34579999999999999999999998876665443

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.75  E-value=0.00062  Score=59.79  Aligned_cols=29  Identities=28%  Similarity=0.331  Sum_probs=26.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .+.|.|++||||||+++.+|..++++++.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d   32 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLS   32 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence            68999999999999999999998877654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.74  E-value=0.0011  Score=60.63  Aligned_cols=30  Identities=17%  Similarity=0.081  Sum_probs=26.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .+..|.|.|++||||||+++.++..+++++
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~   50 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNE   50 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence            456799999999999999999999988774

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.74  E-value=0.0023  Score=63.84  Aligned_cols=29  Identities=17%  Similarity=0.304  Sum_probs=26.2

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+.++..++|.|+||+|||+|+..+|..
T Consensus       198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~  226 (454)
T 2r6a_A          198 SGFQRSDLIIVAARPSVGKTAFALNIAQN  226 (454)
T ss_dssp             SSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999999999999854

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.73  E-value=0.0015  Score=63.32  Aligned_cols=31  Identities=32%  Similarity=0.440  Sum_probs=26.7

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++.+.+|..++|.||+|+||||+++.+|...
T Consensus       151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             CCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            3456788999999999999999999999654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.70  E-value=0.002  Score=60.73  Aligned_cols=27  Identities=41%  Similarity=0.534  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .++..+++.||+|+||||++..+|..+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            357889999999999999999998554

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.70  E-value=0.003  Score=60.39  Aligned_cols=27  Identities=33%  Similarity=0.413  Sum_probs=24.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .+|..++|.||+|+||||+++.+|...
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999999654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.69  E-value=0.0018  Score=61.46  Aligned_cols=28  Identities=29%  Similarity=0.247  Sum_probs=25.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +.++..+.|.||+|+|||||++.|+...
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            5678899999999999999999999764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.68  E-value=0.0009  Score=60.52  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=28.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ..+..+.|.|++||||||+++.++..+|++++.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d   46 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD   46 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence            356789999999999999999999988876643

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.68  E-value=0.00074  Score=58.63  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=21.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..++|.||||+||||+++.++...+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~   27 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccC
Confidence            4689999999999999999997553

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.67  E-value=0.00087  Score=59.65  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=26.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .+..+.|.|++||||||+++.++. .|++++.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id   33 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVID   33 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence            346799999999999999999998 7766554

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.66  E-value=0.0011  Score=57.36  Aligned_cols=28  Identities=32%  Similarity=0.354  Sum_probs=25.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .++..++|.|+||+||||+++.++..++
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4677899999999999999999998765

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.64  E-value=0.0012  Score=62.49  Aligned_cols=36  Identities=31%  Similarity=0.453  Sum_probs=29.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhccccc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA  212 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~  212 (390)
                      .+.-++|.||+|+|||+|+..+|...+..++..++-
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   44 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA   44 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence            356789999999999999999999888766655443

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.63  E-value=0.0013  Score=58.26  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=25.4

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ++....++.+.|.||+|+|||||+++++....
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            44445678899999999999999999997653

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=96.62  E-value=0.0043  Score=56.23  Aligned_cols=29  Identities=21%  Similarity=0.127  Sum_probs=23.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      ..++++||+|+|||.++.+++...+..++
T Consensus       109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~l  137 (237)
T 2fz4_A          109 KRGCIVLPTGSGKTHVAMAAINELSTPTL  137 (237)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHSCSCEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHcCCCEE
Confidence            35999999999999999888876654433

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.61  E-value=0.0023  Score=57.53  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=24.2

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      |++++.-++|+|+||+|||+++..+|.
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            678899999999999999999988764

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=96.61  E-value=0.005  Score=63.15  Aligned_cols=47  Identities=15%  Similarity=0.182  Sum_probs=37.0

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..+.|-+...+.+.+.+...           -...+.++|+||+|+|||+||..++..
T Consensus       124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~  170 (591)
T 1z6t_A          124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRD  170 (591)
T ss_dssp             SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence            36888888888888877431           124567999999999999999999754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.53  E-value=0.0016  Score=61.64  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=28.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhccccc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA  212 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~  212 (390)
                      +.-++|.||+|+|||+|+..+|...+..++..++-
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            34588999999999999999999887666554443

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.52  E-value=0.0011  Score=62.04  Aligned_cols=30  Identities=30%  Similarity=0.430  Sum_probs=25.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhh-ccchhc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHS-VYRVLA  208 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~-~~~~~~  208 (390)
                      ..++|.|+|||||||+++.++... ++.++.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~   33 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN   33 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence            468999999999999999999863 665553

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.51  E-value=0.0059  Score=58.46  Aligned_cols=30  Identities=17%  Similarity=0.271  Sum_probs=25.9

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +.+..+..+.|.||||+|||||+++++...
T Consensus        50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            446788899999999999999999998653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.49  E-value=0.0022  Score=56.52  Aligned_cols=28  Identities=18%  Similarity=0.111  Sum_probs=24.6

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ..++..+.|.||+||||||+++.++...
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3567789999999999999999999765

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.49  E-value=0.0012  Score=61.67  Aligned_cols=31  Identities=19%  Similarity=0.157  Sum_probs=25.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .+..|.|.|++||||||+++.++ ..|++++.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id  104 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIID  104 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence            35679999999999999999999 57766553

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.49  E-value=0.0012  Score=58.54  Aligned_cols=31  Identities=19%  Similarity=0.330  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      +..+.|.|++||||||+++.++..+|++++.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~   33 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVD   33 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence            3569999999999999999999998877654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.43  E-value=0.0072  Score=57.50  Aligned_cols=29  Identities=21%  Similarity=0.198  Sum_probs=24.9

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ...++..++++||+|+||||++..+|..+
T Consensus       101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          101 KENRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             CTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34678889999999999999999998553

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.40  E-value=0.0017  Score=62.21  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=26.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      ..++|.||+|||||+|+..+|..++..++..+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D   39 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD   39 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence            46899999999999999999999886555443

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.40  E-value=0.0043  Score=64.23  Aligned_cols=36  Identities=17%  Similarity=0.148  Sum_probs=30.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAA  212 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~  212 (390)
                      .+..|+|+|+|||||||++++++..+   |.+++.++..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD   89 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   89 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence            46679999999999999999999988   7777766543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.40  E-value=0.0014  Score=57.99  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=28.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcccccc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQ  213 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~  213 (390)
                      .+.+++|.||+|+|||+|+..++...+ .++..+...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~   68 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD   68 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence            467899999999999999999998865 665544433

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=96.38  E-value=0.0034  Score=60.90  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=50.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhcc--chhccccccccCcchhh-------------HHHHHHHHHHHHHhcCCeEE
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAASAAQLYSPYVGE-------------AEQNVTQLFHRARLAAPAIL  241 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i~~~~~~~~~~g~-------------~~~~i~~~f~~A~~~~p~il  241 (390)
                      ....++++|++||||+++++++...++.  .|+.++|..+-......             ... -.-.|..|   ....|
T Consensus       151 ~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a---~~gtl  226 (368)
T 3dzd_A          151 SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELA---DQGTL  226 (368)
T ss_dssp             SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHT---TTSEE
T ss_pred             cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhc---CCCeE
Confidence            3456999999999999999999877653  37888887653322111             000 00123332   44689


Q ss_pred             EEcCCCCCCChhhHHHHHHHh
Q psy11689        242 FIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       242 ~lDEid~~l~~r~~~~~~~~~  262 (390)
                      ||||++.+ +........+.+
T Consensus       227 fldei~~l-~~~~Q~~Ll~~l  246 (368)
T 3dzd_A          227 FLDEVGEL-DQRVQAKLLRVL  246 (368)
T ss_dssp             EEETGGGS-CHHHHHHHHHHH
T ss_pred             EecChhhC-CHHHHHHHHHHH
Confidence            99999986 444444444444

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.36  E-value=0.003  Score=59.24  Aligned_cols=28  Identities=25%  Similarity=0.325  Sum_probs=24.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..+..+.|.||+|||||||++.++..++
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4677899999999999999999997765

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.36  E-value=0.0027  Score=65.31  Aligned_cols=25  Identities=24%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ...++|.||||||||+++.+++..+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999998654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.30  E-value=0.00063  Score=66.45  Aligned_cols=76  Identities=18%  Similarity=0.161  Sum_probs=57.8

Q ss_pred             heeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc--cc--C-CcccchHHHHHHh
Q psy11689         10 NTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF--TK--L-NEEVELSENVQRE   82 (390)
Q Consensus        10 n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~--~~--~-~~~v~l~~~la~~   82 (390)
                      .+|++|++||+++.+|+++++                ||. .|.+|. +.++|.+++..  ..  . -.+.++ +.|++.
T Consensus       251 ~~v~vI~atn~~~~l~~~l~~----------------R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~-~~la~~  313 (389)
T 3vfd_A          251 DRVLVMGATNRPQELDEAVLR----------------RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKEL-AQLARM  313 (389)
T ss_dssp             -CEEEEEEESCGGGCCHHHHT----------------TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHH-HHHHHH
T ss_pred             CCEEEEEecCCchhcCHHHHc----------------CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHH-HHHHHH
Confidence            468999999999998888886                776 566666 47788888864  11  1 123456 889999


Q ss_pred             hcCCccccccccccccchhh
Q psy11689         83 EEGIAGENLQRGGGEEGIEL  102 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~  102 (390)
                      +.|++++++..++.+++...
T Consensus       314 ~~g~~~~~l~~L~~~a~~~~  333 (389)
T 3vfd_A          314 TDGYSGSDLTALAKDAALGP  333 (389)
T ss_dssp             TTTCCHHHHHHHHHHHTTHH
T ss_pred             cCCCCHHHHHHHHHHHHHHH
Confidence            99999999999988877653

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.27  E-value=0.009  Score=59.35  Aligned_cols=29  Identities=17%  Similarity=0.165  Sum_probs=25.8

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+.++.-++|.|+||+|||+++..+|..
T Consensus       195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~  223 (444)
T 2q6t_A          195 GTLGPGSLNIIAARPAMGKTAFALTIAQN  223 (444)
T ss_dssp             CCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            36888999999999999999999998854

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.25  E-value=0.0089  Score=60.72  Aligned_cols=30  Identities=23%  Similarity=0.301  Sum_probs=25.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .+.-|+++|.||+||||+++.+|..+++.+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~   63 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG   63 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            456799999999999999999999886544

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.23  E-value=0.0027  Score=60.03  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=25.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..+..+.|.||+|||||||+++++...+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5678899999999999999999998754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.23  E-value=0.0027  Score=55.58  Aligned_cols=23  Identities=35%  Similarity=0.634  Sum_probs=20.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~  202 (390)
                      -|+|.||+|+|||||++.+..+.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            48999999999999999998664

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.20  E-value=0.0028  Score=62.07  Aligned_cols=33  Identities=27%  Similarity=0.313  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      +.-++|.||+|+|||+|+..+|...+..++..+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D   34 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD   34 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence            345889999999999999999988876655443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.19  E-value=0.0032  Score=56.82  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=25.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..+..+.|.||||+||||+++.++..++
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3678899999999999999999998875

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.12  E-value=0.012  Score=59.33  Aligned_cols=75  Identities=17%  Similarity=0.172  Sum_probs=43.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh---ccchhcccccccc-------------------Ccch-hhHHHHHHHHHHH
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLY-------------------SPYV-GEAEQNVTQLFHR  232 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~-------------------~~~~-g~~~~~i~~~f~~  232 (390)
                      .++..|+++|+||+||||++..+|..+   |..+..+++....                   .... ..........+..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999654   3333333321100                   0000 1111222345555


Q ss_pred             HHhcCCeEEEEcCCCCCC
Q psy11689        233 ARLAAPAILFIDEIERTY  250 (390)
Q Consensus       233 A~~~~p~il~lDEid~~l  250 (390)
                      +.....+++|+|-+-..-
T Consensus       179 ~~~~~~DvvIIDTpG~~~  196 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHK  196 (504)
T ss_dssp             HHHTTCCEEEEEECCCCT
T ss_pred             HHHCCCcEEEEeCCCCcc
Confidence            555667899999887764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.11  E-value=0.0064  Score=60.66  Aligned_cols=59  Identities=14%  Similarity=0.215  Sum_probs=33.0

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..|-.++....++++.  +++++.+.......       .    .....++|.|+||||||+++.+++..+.
T Consensus        12 ~~~~~~~~p~~~~~Ln--~~Q~~av~~~~~~i-------~----~~~~~~li~G~aGTGKT~ll~~~~~~l~   70 (459)
T 3upu_A           12 SGLVPRGSHMTFDDLT--EGQKNAFNIVMKAI-------K----EKKHHVTINGPAGTGATTLTKFIIEALI   70 (459)
T ss_dssp             ---------CCSSCCC--HHHHHHHHHHHHHH-------H----SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCccccCCCccccCC--HHHHHHHHHHHHHH-------h----cCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3465556666666663  45555555443321       1    1223899999999999999999987653

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=96.10  E-value=0.012  Score=61.00  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +..+++.||||||||+++..+...+
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            5679999999999999988776443

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.07  E-value=0.0035  Score=53.87  Aligned_cols=28  Identities=14%  Similarity=0.100  Sum_probs=23.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +.++ ..+|+||+|+|||+|+++|+..++
T Consensus        24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           24 FSKG-FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             CCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            3344 789999999999999999987654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.05  E-value=0.0032  Score=60.89  Aligned_cols=33  Identities=24%  Similarity=0.183  Sum_probs=27.8

Q ss_pred             hhcCCCC--CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        171 ERLAIPK--PKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       171 ~~~~~~~--~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      -.+.+.+  +..+.|.||+|||||||++++++...
T Consensus       161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3445566  88999999999999999999998754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.04  E-value=0.003  Score=57.17  Aligned_cols=32  Identities=16%  Similarity=0.280  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      ...+.|.|||||||||+++.++...+++.+..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~   39 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQIST   39 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            45689999999999999999999988776543

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=96.04  E-value=0.0029  Score=55.94  Aligned_cols=30  Identities=17%  Similarity=0.088  Sum_probs=27.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ..|.|.|++|||||++++.+|..+|++++.
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            469999999999999999999999998874

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.02  E-value=0.0078  Score=56.62  Aligned_cols=73  Identities=19%  Similarity=0.126  Sum_probs=45.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh---ccchhcccccccc-------------------Ccchh-hHHHHHHHHHHHHH
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLY-------------------SPYVG-EAEQNVTQLFHRAR  234 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~-------------------~~~~g-~~~~~i~~~f~~A~  234 (390)
                      +..+++.|++|+||||++..+|..+   +..+..++.....                   ....+ .....+...+..+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            7789999999999999999999654   3333322221100                   00000 11222345666666


Q ss_pred             hcCCeEEEEcCCCCCC
Q psy11689        235 LAAPAILFIDEIERTY  250 (390)
Q Consensus       235 ~~~p~il~lDEid~~l  250 (390)
                      ....+++++|=+-..-
T Consensus       178 ~~~~D~ViIDTpg~~~  193 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHG  193 (297)
T ss_dssp             HTTCSEEEEECCCSCC
T ss_pred             hCCCCEEEEeCCCCcc
Confidence            5677899999987765

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.02  E-value=0.007  Score=72.78  Aligned_cols=66  Identities=24%  Similarity=0.252  Sum_probs=52.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                      ..+..+.||+|||||.+++.+|+.+|.+++.++|.+.+.-      +.+..+|.-+... .+..++||+.++-
T Consensus       604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~  669 (3245)
T 3vkg_A          604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLE  669 (3245)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSC
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCC
Confidence            4557899999999999999999999999999998765442      3455666665544 5789999999964

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.00  E-value=0.0059  Score=53.09  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=27.2

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccchhcccccc
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQ  213 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~  213 (390)
                      +|++|++|||||++|..++.. +.+.+++....
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence            799999999999999999988 77777766544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.96  E-value=0.012  Score=50.01  Aligned_cols=25  Identities=28%  Similarity=0.505  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ++..++|.|+||+|||+|+++++..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999865

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.94  E-value=0.01  Score=63.20  Aligned_cols=56  Identities=16%  Similarity=0.199  Sum_probs=35.0

Q ss_pred             CccChHHHHHHHHHHHhccccCHH-HhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAR-EFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      +++-.....+.+.+.-..|..... .+.. .+..+..+++.||+|+|||+++..++..
T Consensus        76 ~~~l~~~~~~~l~~r~~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A           76 GREFTPKYVDILKIRRELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             CSBCCHHHHHHHHHHTTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHhhcCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            666666666666655544433221 1111 1234678999999999999988777643

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.93  E-value=0.0019  Score=56.87  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=21.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .+.|.|++||||||+++.++..++
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999998774

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.81  E-value=0.021  Score=63.32  Aligned_cols=47  Identities=17%  Similarity=0.207  Sum_probs=37.3

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..+.|-+...+++.+.+...           -...+.+.|+|+.|+|||+||+.++..
T Consensus       124 ~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          124 VIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             SSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             ceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            36889899988888877431           124567899999999999999999865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.80  E-value=0.0044  Score=59.67  Aligned_cols=31  Identities=16%  Similarity=0.267  Sum_probs=27.3

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +.+.++..+.|.||+|+|||||++.|++...
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3466899999999999999999999998764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.76  E-value=0.0053  Score=61.02  Aligned_cols=31  Identities=19%  Similarity=0.336  Sum_probs=27.3

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +.+.++..+.|.||+|||||||++.|++...
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4567899999999999999999999997754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.74  E-value=0.0045  Score=61.16  Aligned_cols=30  Identities=27%  Similarity=0.331  Sum_probs=25.3

Q ss_pred             hcCCCCCce--EEEEcCCCChHHHHHHHHHHh
Q psy11689        172 RLAIPKPKG--ILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       172 ~~~~~~~~~--vLl~GppGtGKT~La~aia~~  201 (390)
                      ++.+.+|..  +.|.||+|+|||||++++++.
T Consensus        34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             ceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            345678888  999999999999999999865

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.73  E-value=0.005  Score=57.11  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=20.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+.|.||+|+|||||++++++.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999954

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=95.71  E-value=0.018  Score=50.71  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ...+++|+++|.||||+|-.+|..
T Consensus        28 ~g~i~v~tG~GkGKTTaA~GlalR   51 (196)
T 1g5t_A           28 RGIIIVFTGNGKGKTTAAFGTAAR   51 (196)
T ss_dssp             CCCEEEEESSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999844

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.70  E-value=0.0064  Score=57.85  Aligned_cols=27  Identities=26%  Similarity=0.191  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .+..+.|.||+||||||++++++....
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455799999999999999999987754

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.68  E-value=0.0062  Score=52.60  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+.++||.|+||+||||++.++...
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            5789999999999999999999874

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.68  E-value=0.018  Score=57.04  Aligned_cols=75  Identities=27%  Similarity=0.315  Sum_probs=46.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh----ccchhccccccccCcc-------------------hh-hHHHHHHHHHH
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS----VYRVLAASAAQLYSPY-------------------VG-EAEQNVTQLFH  231 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~----~~~~~~i~~~~~~~~~-------------------~g-~~~~~i~~~f~  231 (390)
                      .++..++++|++|+||||++..+|..+    |..+..+++.......                   .+ .....+...+.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            356789999999999999999998554    3334333332111110                   00 11222355666


Q ss_pred             HHHhcCCeEEEEcCCCCCC
Q psy11689        232 RARLAAPAILFIDEIERTY  250 (390)
Q Consensus       232 ~A~~~~p~il~lDEid~~l  250 (390)
                      .+.....+++|+|=+-.+-
T Consensus       178 ~~~~~~~D~VIIDTpG~l~  196 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLH  196 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCT
T ss_pred             HHHhCCCCEEEEECCCccc
Confidence            6665677899999986553

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.67  E-value=0.032  Score=55.08  Aligned_cols=26  Identities=27%  Similarity=0.220  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++..+++.|++|+||||++..+|..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            67789999999999999999999554

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.67  E-value=0.0031  Score=59.10  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=20.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +.-|.|.||+||||||+++.++..++
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45699999999999999999998766

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.63  E-value=0.026  Score=56.41  Aligned_cols=30  Identities=23%  Similarity=0.268  Sum_probs=25.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .+..|+++|.||+||||+++.++..++..+
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~   67 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG   67 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            456799999999999999999998876444

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.61  E-value=0.0079  Score=56.96  Aligned_cols=30  Identities=17%  Similarity=0.207  Sum_probs=26.4

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .|+.++.-++|.|+||+|||+|+..+|...
T Consensus        63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999999998543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.61  E-value=0.011  Score=58.55  Aligned_cols=26  Identities=38%  Similarity=0.382  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++..++++|++|+||||++..+|..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.60  E-value=0.0046  Score=54.06  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=26.3

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++.+.++..+.|.|++|+|||||+++++...
T Consensus        20 ~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           20 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             HCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3667788899999999999999999997543

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=95.57  E-value=0.015  Score=51.18  Aligned_cols=93  Identities=14%  Similarity=0.121  Sum_probs=52.2

Q ss_pred             CCCceEEEEcCCCChHH-HHHHHHHHhh--ccchhccccccccCcch----hhHH--------HHHHHHHHHHHhcCCeE
Q psy11689        176 PKPKGILLYGPPGCAKT-SLVRTLAAHS--VYRVLAASAAQLYSPYV----GEAE--------QNVTQLFHRARLAAPAI  240 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT-~La~aia~~~--~~~~~~i~~~~~~~~~~----g~~~--------~~i~~~f~~A~~~~p~i  240 (390)
                      ..+.-.++|||.|+||| .|.+++.+..  +..++.++.. +-..+.    ....        ....+++..  ....++
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~--~~~~Dv   94 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQE--ALGVAV   94 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHH--HHTCSE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHh--ccCCCE
Confidence            35677899999999999 8888886543  3444444422 111111    0000        011123332  234689


Q ss_pred             EEEcCCCCCCChhhHHHHHHHhhcCCCcEEEecc
Q psy11689        241 LFIDEIERTYNCEYREQTADNAKKPRIPRTNGGY  274 (390)
Q Consensus       241 l~lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~~  274 (390)
                      |+|||+.-+ . . ..+....+...++..+..+.
T Consensus        95 IlIDEaQFf-k-~-~ve~~~~L~~~gk~VI~~GL  125 (195)
T 1w4r_A           95 IGIDEGQFF-P-D-IVEFCEAMANAGKTVIVAAL  125 (195)
T ss_dssp             EEESSGGGC-T-T-HHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEchhhh-H-H-HHHHHHHHHHCCCeEEEEec
Confidence            999999987 3 3 33344555566666665554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.57  E-value=0.013  Score=60.68  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             EEEEcCCCChHHHHHHHHHHhh
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~~  202 (390)
                      +.|.||+|+|||||++++++..
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC
T ss_pred             EEEECCCCChHHHHHHHHhCCC
Confidence            9999999999999999999753

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=95.57  E-value=0.029  Score=57.20  Aligned_cols=43  Identities=12%  Similarity=-0.031  Sum_probs=33.8

Q ss_pred             ChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689        148 GLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       148 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      |-+..++++.+.+...          .-.....+.|+|+.|+|||+||+.+++
T Consensus       132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            8888888888777421          012357799999999999999999996

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.56  E-value=0.012  Score=58.62  Aligned_cols=27  Identities=33%  Similarity=0.441  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .+..++|+||||+|||+|++.++....
T Consensus       150 kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          150 KGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             TTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            577899999999999999999986543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.55  E-value=0.0051  Score=62.88  Aligned_cols=29  Identities=28%  Similarity=0.391  Sum_probs=26.2

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +.++..+.|.|++|||||||+++++..++
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            45788899999999999999999998875

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.50  E-value=0.031  Score=55.55  Aligned_cols=29  Identities=17%  Similarity=0.214  Sum_probs=25.9

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      |+.++.-++|.|+||+|||+++-.+|...
T Consensus       193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          193 GYKRRNFVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence            78899999999999999999999988543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.48  E-value=0.0056  Score=55.04  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=24.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..++..+.|.||+|+||||+++.++..
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            456788999999999999999999887

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.44  E-value=0.0056  Score=52.75  Aligned_cols=25  Identities=16%  Similarity=0.183  Sum_probs=22.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..+.|.|++|||||||++.++....
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4689999999999999999997754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.44  E-value=0.028  Score=53.97  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ....+.|.|+||+|||||+..++..+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999998664

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.44  E-value=0.0099  Score=51.34  Aligned_cols=26  Identities=19%  Similarity=0.147  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ....+.|.|++|+|||||++.++..+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            34578999999999999999998764

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=95.41  E-value=0.0071  Score=54.45  Aligned_cols=31  Identities=13%  Similarity=-0.027  Sum_probs=27.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ...|.|.|++|||||++++.+|..+|++++.
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d   44 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD   44 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence            4569999999999999999999999988764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.37  E-value=0.015  Score=53.47  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..++|.|+||+|||||++++...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999854

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.36  E-value=0.0084  Score=60.20  Aligned_cols=31  Identities=13%  Similarity=0.187  Sum_probs=26.4

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ++.+.+ ..+.|.||+|+|||||+++++....
T Consensus        24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             EEECCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            455677 8999999999999999999997643

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.33  E-value=0.02  Score=54.25  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=21.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ..++|.|++|+|||||++.++...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            468999999999999999999754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.32  E-value=0.0045  Score=56.77  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=25.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh-ccch
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS-VYRV  206 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~-~~~~  206 (390)
                      .++..|.|.|++|+||||+++.++..+ +..+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~   53 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEV   53 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            456789999999999999999999887 4433

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=95.27  E-value=0.019  Score=50.20  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=19.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      +..+++.+|+|+|||.++-..+..
T Consensus        48 ~~~~li~~~tGsGKT~~~~~~~~~   71 (216)
T 3b6e_A           48 GKNIIICLPTGSGKTRVAVYIAKD   71 (216)
T ss_dssp             TCCEEEECSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999988777643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.24  E-value=0.033  Score=53.22  Aligned_cols=28  Identities=14%  Similarity=0.288  Sum_probs=24.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ...+..+.+.|+||+|||||++.++...
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4567889999999999999999998654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.21  E-value=0.011  Score=51.41  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.++|.|++|+|||||++.++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            35899999999999999999875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.19  E-value=0.011  Score=53.35  Aligned_cols=25  Identities=20%  Similarity=0.390  Sum_probs=23.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      |..+.+.|++|+||||+++.++..+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            5679999999999999999999887

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.18  E-value=0.01  Score=51.42  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      -.++|.|++|+|||||++.++...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.14  E-value=0.014  Score=50.26  Aligned_cols=25  Identities=20%  Similarity=0.134  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ...+.+.|++|+|||||+..++..+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            3468999999999999999998765

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.11  E-value=0.013  Score=52.22  Aligned_cols=27  Identities=26%  Similarity=0.218  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .+..+.|.|++|+||||+++.++..+.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999997764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.11  E-value=0.023  Score=52.00  Aligned_cols=22  Identities=41%  Similarity=0.705  Sum_probs=20.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .++|.|+||+|||+|++++...
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999854

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.08  E-value=0.013  Score=49.02  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +.-.+|+||+|+|||+++.|+.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3467999999999999999997544

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.05  E-value=0.025  Score=48.49  Aligned_cols=27  Identities=33%  Similarity=0.498  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .....+++.|++|+|||+|+.++....
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345679999999999999999998653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.97  E-value=0.014  Score=57.16  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=23.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      +..+..+.|.|+||+|||||++++..
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            34677899999999999999999987

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=94.94  E-value=0.055  Score=59.12  Aligned_cols=43  Identities=14%  Similarity=0.040  Sum_probs=32.6

Q ss_pred             cChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        147 GGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       147 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|-+...+.|.+.+...            ...+-+.|+|+.|.|||+||+.++..
T Consensus       131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d  173 (1221)
T 1vt4_I          131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS  173 (1221)
T ss_dssp             CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence            56677777777766421            23567999999999999999999853

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.94  E-value=0.017  Score=50.25  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=19.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      +.-++++||+|+||||++..++..
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999998666654

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.92  E-value=0.012  Score=60.59  Aligned_cols=36  Identities=19%  Similarity=0.118  Sum_probs=28.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc----cchhccccc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV----YRVLAASAA  212 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~----~~~~~i~~~  212 (390)
                      .+..|+|.|+|||||||++++++..++    .+++.++..
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D  434 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD  434 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence            456799999999999999999999876    455555443

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=94.87  E-value=0.048  Score=52.69  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=20.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+.|.|+||+|||||+++++..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~  202 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGL  202 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999854

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=94.87  E-value=0.018  Score=51.54  Aligned_cols=28  Identities=25%  Similarity=0.135  Sum_probs=25.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      .+..+.+.|++|+||||+++.++..++.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            5778999999999999999999998875

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.86  E-value=0.015  Score=56.10  Aligned_cols=27  Identities=22%  Similarity=0.303  Sum_probs=23.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .+..+.|.||||+|||||+++++....
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhcccc
Confidence            467899999999999999999987543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=94.85  E-value=0.027  Score=52.15  Aligned_cols=23  Identities=39%  Similarity=0.589  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..+.|.|+||+|||+|++++...
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            45899999999999999999863

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.85  E-value=0.013  Score=52.80  Aligned_cols=29  Identities=21%  Similarity=0.162  Sum_probs=22.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      ..+..|.|.||+|+||||+++.++..+..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            35778999999999999999999988743

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=94.84  E-value=0.031  Score=51.21  Aligned_cols=23  Identities=35%  Similarity=0.444  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..++|.|+||+|||+|++++...
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            45999999999999999999853

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=94.80  E-value=0.028  Score=58.46  Aligned_cols=20  Identities=35%  Similarity=0.630  Sum_probs=15.3

Q ss_pred             ceEEEEcCCCChHHHHHHHH
Q psy11689        179 KGILLYGPPGCAKTSLVRTL  198 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~ai  198 (390)
                      .-.||.||||||||+.+..+
T Consensus       206 ~~~lI~GPPGTGKT~ti~~~  225 (646)
T 4b3f_X          206 ELAIIHGPPGTGKTTTVVEI  225 (646)
T ss_dssp             SEEEEECCTTSCHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHH
Confidence            35799999999999554443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.77  E-value=0.016  Score=48.72  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..++|.|++|+|||+|++.++..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999853

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=94.76  E-value=0.014  Score=52.10  Aligned_cols=31  Identities=26%  Similarity=0.244  Sum_probs=26.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      -.|.|+|..||||||+++.++. .|++++..+
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD   40 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD   40 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence            4589999999999999999987 788776443

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.76  E-value=0.018  Score=52.23  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .+..+.|.|++|+||||+++.++..+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999997764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.68  E-value=0.022  Score=50.03  Aligned_cols=26  Identities=35%  Similarity=0.512  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ....+++.|++|+|||+|+..+....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45679999999999999999998764

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.67  E-value=0.021  Score=54.67  Aligned_cols=28  Identities=21%  Similarity=0.282  Sum_probs=25.7

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      |+.++.-++|.|+||+|||+|+..+|..
T Consensus        42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~   69 (338)
T 4a1f_A           42 GFNKGSLVIIGARPSMGKTSLMMNMVLS   69 (338)
T ss_dssp             SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            6789999999999999999999999855

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.63  E-value=0.022  Score=51.22  Aligned_cols=29  Identities=28%  Similarity=0.175  Sum_probs=25.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      ..+..+.+.|++|+||||+++.++..++.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            35778999999999999999999987654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.63  E-value=0.02  Score=47.27  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|++.+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999865

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.62  E-value=0.021  Score=55.62  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=26.1

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +.+.++..++|.||+|+|||+|++.+++..
T Consensus       169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            346689999999999999999999998754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.59  E-value=0.02  Score=53.87  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .+..+.|.||||+|||||+++++ ...
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            46789999999999999999998 543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.57  E-value=0.016  Score=49.61  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .++|.|++|+|||+|++.++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999863

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=94.54  E-value=0.0097  Score=58.60  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      .+..+.|.||+|+|||||++++++
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            455799999999999999999996

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.53  E-value=0.0079  Score=56.87  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=23.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +.++..+.|.||||+|||||+++++...
T Consensus       170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          170 HFQDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             GGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence            3468899999999999999999997654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.52  E-value=0.021  Score=49.41  Aligned_cols=28  Identities=25%  Similarity=0.338  Sum_probs=21.7

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .-...-.|++.|++|+|||+|++.+...
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3345667999999999999999999854

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.50  E-value=0.021  Score=47.35  Aligned_cols=23  Identities=13%  Similarity=0.287  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|++.+...
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.49  E-value=0.021  Score=46.98  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=20.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|++.+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999855

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.49  E-value=0.023  Score=50.63  Aligned_cols=26  Identities=23%  Similarity=0.243  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +..|.|.|++|+||||+++.++..+.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56799999999999999999997764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.43  E-value=0.024  Score=46.84  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|+..+...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35999999999999999999854

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.42  E-value=0.018  Score=54.12  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .+..+.|.||||+|||||+++++...
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCcHHHHHHHhcccc
Confidence            46789999999999999999998654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.39  E-value=0.02  Score=57.81  Aligned_cols=28  Identities=14%  Similarity=0.076  Sum_probs=25.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      .+..+.|.|.+||||||+++++|..++.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999999874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.39  E-value=0.029  Score=47.10  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=22.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .....|++.|++|+|||+|++.+...
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35667999999999999999999753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.38  E-value=0.025  Score=46.78  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|++.+...
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999854

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.37  E-value=0.023  Score=48.40  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..++|.|++|+|||+|++.++..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.34  E-value=0.032  Score=47.74  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .....+++.|++|+|||+|++.+...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34577999999999999999999854

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.33  E-value=0.025  Score=46.88  Aligned_cols=22  Identities=23%  Similarity=0.455  Sum_probs=20.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|++.+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999854

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.30  E-value=0.025  Score=47.37  Aligned_cols=23  Identities=39%  Similarity=0.615  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|++.+...
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            46999999999999999999754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.29  E-value=0.026  Score=46.90  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      -.+++.|++|+|||+|++.+....
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            469999999999999999998653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=94.27  E-value=0.052  Score=50.09  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.++|.|.||+|||+|++++...
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999999999999854

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=94.25  E-value=0.027  Score=54.11  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .+..+.|.|+||+|||||+++++...
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            46779999999999999999998653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.24  E-value=0.027  Score=47.31  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|++.+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999854

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.20  E-value=0.027  Score=46.85  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|++.+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999855

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=94.18  E-value=0.027  Score=55.01  Aligned_cols=26  Identities=19%  Similarity=0.290  Sum_probs=22.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..+..+.|.|+||+|||||++++...
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            45677999999999999999999855

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.18  E-value=0.13  Score=62.21  Aligned_cols=70  Identities=20%  Similarity=0.250  Sum_probs=53.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHH-HhcCCeEEEEcCCC
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRA-RLAAPAILFIDEIE  247 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A-~~~~p~il~lDEid  247 (390)
                      .|+++.||+|..||||++|++..|.-+++.++.+......+  ..+-...++.++..| ...+|.+.+|+|-.
T Consensus      1644 qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A         1644 QPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK--SSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp             STTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----CC--HHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred             cCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCCC--HHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            56788999999999999999999999999988876544322  233456788888888 45678888888875

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.17  E-value=0.034  Score=46.31  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..-.+++.|++|+|||+|++.+...
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4567999999999999999999754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.17  E-value=0.027  Score=46.78  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|++.+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999853

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.16  E-value=0.028  Score=47.24  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..-.+++.|++|+|||+|++.+...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3456999999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.14  E-value=0.028  Score=46.66  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|++.+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35899999999999999999854

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.13  E-value=0.028  Score=46.76  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=19.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHH
Q psy11689        180 GILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~  200 (390)
                      .+++.|++|+|||+|++.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999963

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.13  E-value=0.17  Score=47.42  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=22.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      +++..|.+.|.||+|||||++++...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            34567999999999999999999854

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=94.08  E-value=0.026  Score=46.81  Aligned_cols=21  Identities=38%  Similarity=0.771  Sum_probs=19.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHH
Q psy11689        180 GILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~  200 (390)
                      .+++.|++|+|||+|++.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            589999999999999999963

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.08  E-value=0.03  Score=49.34  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +...+|+||+|+|||+++.||.-.++
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            45689999999999999999976554

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.02  E-value=0.031  Score=46.28  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|++.+...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999854

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.02  E-value=0.024  Score=54.69  Aligned_cols=28  Identities=25%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .+.++ ...|+||+|+|||+++.+++..+
T Consensus        23 ~~~~g-~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           23 NFPEG-VTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             ECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence            34455 78999999999999999998543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.01  E-value=0.033  Score=46.17  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|++.+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45999999999999999999853

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.97  E-value=0.033  Score=46.77  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .-.+++.|++|+|||+|++.+...
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            346999999999999999999854

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.95  E-value=0.033  Score=47.30  Aligned_cols=24  Identities=25%  Similarity=0.283  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .-.|++.|++|+|||+|++.+...
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            356999999999999999999854

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.94  E-value=0.035  Score=45.91  Aligned_cols=22  Identities=27%  Similarity=0.378  Sum_probs=19.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|++.+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=93.93  E-value=0.041  Score=47.45  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=23.8

Q ss_pred             hhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689        171 ERLAIPKPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       171 ~~~~~~~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      +++--...-.|++.|++|+|||+|++.+..
T Consensus        22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           22 SRIFGKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             GGTTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             HHhccCCccEEEEECCCCCCHHHHHHHHHh
Confidence            333334567799999999999999999964

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.91  E-value=0.036  Score=47.73  Aligned_cols=25  Identities=20%  Similarity=0.426  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      +.-.|++.|++|+|||+|++.+...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4567999999999999999999865

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=93.86  E-value=0.037  Score=54.56  Aligned_cols=29  Identities=14%  Similarity=0.243  Sum_probs=24.7

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +.++...+|+||+|+|||+|+.+++...+
T Consensus        23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           23 FGESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            44578899999999999999999986544

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=93.83  E-value=0.036  Score=47.01  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|++.+...
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35999999999999999999854

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.81  E-value=0.035  Score=46.64  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ...+++.|++|+|||+|++++...
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356999999999999999999865

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=93.80  E-value=0.033  Score=56.08  Aligned_cols=29  Identities=17%  Similarity=0.173  Sum_probs=26.0

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      |+.++.-++|.|+||+|||+|+..+|...
T Consensus       238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~  266 (503)
T 1q57_A          238 GARGGEVIMVTSGSGMVMSTFVRQQALQW  266 (503)
T ss_dssp             CCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence            68889999999999999999999998553

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.80  E-value=0.033  Score=46.81  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .-.|++.|++|+|||+|++++...
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            346999999999999999999743

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=93.79  E-value=0.034  Score=46.59  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|++|+|||+|++.+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999854

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.79  E-value=0.037  Score=46.34  Aligned_cols=24  Identities=17%  Similarity=0.310  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .-.+++.|++|+|||+|++.+...
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            356999999999999999999855

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.74  E-value=0.046  Score=46.71  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..-.|++.|++|+|||+|++++...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456999999999999999999865

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.73  E-value=0.037  Score=46.74  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHH
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      ...-.+++.|++|+|||+|++.+..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3566799999999999999999873

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=93.72  E-value=0.013  Score=52.93  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=20.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .+.|.||+|||||||+++|+....
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcccc
Confidence            457889999999999999997654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.70  E-value=0.039  Score=47.29  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.|++.|++|+|||+|++.+...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999864

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.69  E-value=0.038  Score=52.23  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+.+++|.|++|+|||+++.++...
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            5789999999999999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.68  E-value=0.04  Score=48.45  Aligned_cols=26  Identities=19%  Similarity=0.253  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ....+++.|++|+|||||+..++...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999999775

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.67  E-value=0.038  Score=46.63  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .-.|++.|++|+|||+|++.+...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            356999999999999999999854

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=93.66  E-value=0.035  Score=47.15  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|++.+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4899999999999999999854

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=93.65  E-value=0.2  Score=49.73  Aligned_cols=23  Identities=17%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..|+|.|.||+|||+|++.+...
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            46999999999999999999743

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=93.63  E-value=0.039  Score=46.77  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .-.+++.|++|+|||+|++.+...
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            356999999999999999999854

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.63  E-value=0.039  Score=47.07  Aligned_cols=23  Identities=22%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.|++.|++|+|||+|+..++..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	390
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	8e-27
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	3e-26
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	2e-21
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	4e-18
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	2e-17
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	1e-12
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	9e-08
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	1e-07
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	4e-07
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	2e-04
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	3e-04
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	6e-04
d1g41a_	443	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	8e-04
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	0.002

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (263), Expect = 8e-27
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
           + G    +  + + VE+  +    F++L    PKG+L+ GPPG  KT L + +A  +   
Sbjct: 14  VAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72

Query: 206 VLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
               S +     +VG     V  +F +A+ AAP I+FIDEI+
Sbjct: 73  FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEID 114

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score =  103 bits (258), Expect = 3e-26
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++ G +  +  +++ VE+  K    F  +    PKG+LL GPPG  KT L R +A  +  
Sbjct: 10  DVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV 68

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             + AS +     +VG     V  LF  A+  AP I+FIDEI+
Sbjct: 69  PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 111

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.6 bits (224), Expect = 2e-21
 Identities = 36/103 (34%), Positives = 65/103 (63%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GGL+ V+  +++ V++P ++  +F +  +   KG+L YGPPGC KT L + +A     
Sbjct: 8   DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 67

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
             ++    +L + + GE+E NV ++F +AR AAP +LF DE++
Sbjct: 68  NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 110

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 82.4 bits (203), Expect = 4e-18
 Identities = 43/281 (15%), Positives = 74/281 (26%), Gaps = 34/281 (12%)

Query: 110 GGEGGIGLNERVQRIGEGREERRDWEGEEEGAFVPELGGLKGVRA--LMEKTVEWPFKYA 167
                I  ++  QRI   +E+    E         E G +K      L++ T E      
Sbjct: 52  ESGDAIVFDKNAQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSP 111

Query: 168 REFERLAIPKPKGILL-YGPPGCAKTSLVRTLAAHSVYRV--LAASAAQLYSPYVGEAEQ 224
              E        G+++  G     KT LV  L      +         +  S Y  +   
Sbjct: 112 VVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNV 171

Query: 225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTA----- 279
            V  +          ++ ID +              N        T  G   + A     
Sbjct: 172 FVDDIARAML--QHRVIVIDSL-------------KNVIGAAGGNTTSGGISRGAFDLLS 216

Query: 280 --DTANKPR----IQRTKREYREQTADTAHKTRISRTNRGYREKTADTANKPRI-PRTNR 332
                   R    I        +       K   SR+N      + D   + ++  RT  
Sbjct: 217 DIGAMAASRGCVVIASLNPTSNDDKIVELVK-EASRSNSTSLVISTDVDGEWQVLTRTGE 275

Query: 333 GYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRI 373
           G +  +     +        T    ++     A+   IQ +
Sbjct: 276 GLQRLTHTLQTSYG-EHSVLTIHTSKQSGGKQASGKAIQTV 315

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.3 bits (194), Expect = 2e-17
 Identities = 36/102 (35%), Positives = 59/102 (57%)

Query: 145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY 204
           ++GG +   A +++ VE P ++   F+ + +  P+GILLYGPPG  KT + R +A  +  
Sbjct: 5   DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 64

Query: 205 RVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEI 246
                +  ++ S   GE+E N+ + F  A   APAI+FIDE+
Sbjct: 65  FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 106

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 66.2 bits (161), Expect = 1e-12
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 10/138 (7%)

Query: 118 NERVQRIGEGREERRDWEGEEEGAFVPE--LGGLKGVRALMEKTVEWPFKYAREFERLAI 175
            + +        +R D      G+   E  + G+  +  L+ K     + + +      I
Sbjct: 93  EQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVY-NI 151

Query: 176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY-VGEAEQNVTQLFHRAR 234
           PK +  L  GP    KT+L   L      + L  +       + +G A      +F   +
Sbjct: 152 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVK 211

Query: 235 LAA------PAILFIDEI 246
                    P+   I+ +
Sbjct: 212 GTGGESRDLPSGQGINNL 229

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 50.7 bits (120), Expect = 9e-08
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 4/94 (4%)

Query: 157 EKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA---AQ 213
           E  +    +   +  + A+  P   LL G PG  KTSL   +   +   V+        Q
Sbjct: 12  ENRLNDNLEELIQG-KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 70

Query: 214 LYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIE 247
            +  +    +     +       +  +       
Sbjct: 71  QHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISR 104

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 49.9 bits (118), Expect = 1e-07
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 146 LGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR 205
           + G+      + + ++      ++ +         +LL GPP   KT+L   +A  S + 
Sbjct: 8   MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 67

Query: 206 VLAASAAQLYSPYVGEAE-QNVTQLFHRARLAAPAILFIDEIER 248
            +   +      +   A+ Q + ++F  A  +  + + +D+IER
Sbjct: 68  FIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIER 111

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 152 VRALMEKTVEWPFKYAREFERLAIPK-PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS 210
            RA+    +   ++  +  E L     PK IL+ GP G  KT + R LA  +    +   
Sbjct: 23  KRAVAI-ALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 81

Query: 211 AAQLY--SPYVGEAEQNVTQLFHRA-----RLAAPAILFIDEIER 248
           A +         E +  +  L   A      +    I+FIDEI++
Sbjct: 82  ATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 126

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 163 PFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA 222
             +   E  +      + +LL+GPPG  KT+L   +A      +   S   +  P    A
Sbjct: 20  KLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAA 79

Query: 223 EQNVTQLFHRARLAAPAILFIDEIER 248
                       L    ILFIDEI R
Sbjct: 80  -------ILANSLEEGDILFIDEIHR 98

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 4/79 (5%)

Query: 178 PKGILLYGPPGCAKTSLVRT----LAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRA 233
                L G PG  KT  +R         +  R +  +     +      E   +      
Sbjct: 43  YPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP 102

Query: 234 RLAAPAILFIDEIERTYNC 252
           R       F+  +      
Sbjct: 103 RRGLSRDEFLALLVEHLRE 121

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 145 ELGGLKG-VRALMEKTVEWPFKYAREFERLAI---PKPKGILLYGPPGCAKTSLVRTLAA 200
           ++ G KG V  L      W       F+          +  +LYGPPG  KT+    +A 
Sbjct: 15  QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 74

Query: 201 HSVY 204
              Y
Sbjct: 75  ELGY 78

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 7/121 (5%)

Query: 177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLA 236
            PK IL+ GP G  KT + R LA  +    +   A +     VG   + V  +      +
Sbjct: 48  TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF--TEVGYVGKEVDSIIRDLTDS 105

Query: 237 APAILFIDEIERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTKREYRE 296
           A  ++   EI      + R +  D A++  +       + Q  +  N      T++ +R+
Sbjct: 106 AMKLVRQQEIA-----KNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRK 160

Query: 297 Q 297
           +
Sbjct: 161 K 161

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 173 LAIPKPKGILLYGPPGCAKTSLVRTLAA 200
              P   G+L++G  G  K++ VR LAA
Sbjct: 23  AVDPGIGGVLVFGDRGTGKSTAVRALAA 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	390
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	100.0
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	100.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	100.0
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.96
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.79
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.74
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.56
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.56
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.53
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.31
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.31
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.3
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.24
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.18
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.11
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.1
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.08
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.07
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.07
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.06
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.06
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.05
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.05
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.04
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.03
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.03
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.02
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.99
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.98
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.98
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.97
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.94
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.92
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.92
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.9
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.85
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.84
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.83
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.82
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.82
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.79
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.75
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.73
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	98.71
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.71
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.67
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.66
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.65
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.64
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.62
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.61
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.57
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.1
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.05
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.03
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.02
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.97
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.96
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.92
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.83
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.8
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.79
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.77
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.77
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.76
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.76
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.74
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.72
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.72
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.71
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.69
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.68
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.67
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.66
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.65
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.61
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.6
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.52
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.5
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.49
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.47
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.47
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.46
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.42
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.41
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.4
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.39
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.38
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.37
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.36
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.34
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.33
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.33
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.22
d1okkd2	207	GTPase domain of the signal recognition particle r	97.21
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.18
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.13
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.12
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.1
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.07
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.99
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.96
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.95
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.94
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.89
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.86
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.85
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.75
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.74
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.73
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.68
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.62
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.62
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.58
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.53
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.53
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.52
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.51
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.48
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.48
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.45
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.38
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.17
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.15
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.14
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.07
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.06
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.96
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.93
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.77
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.76
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.76
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.73
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.66
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.59
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.59
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.51
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.44
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.42
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.4
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.4
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.32
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.26
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.24
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.23
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.2
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.2
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.19
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.12
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.08
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.05
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.98
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.95
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	94.93
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.89
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.87
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.72
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	94.71
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.7
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.7
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.69
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.62
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	94.53
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.5
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.5
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.41
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	94.4
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.38
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.27
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.22
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.21
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.17
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.16
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.16
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.12
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.11
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.08
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.96
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.95
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.9
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.81
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.8
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.76
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.75
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.68
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.67
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.66
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.61
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.6
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.6
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	93.55
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.51
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.5
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.46
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.42
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.4
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.37
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.35
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	93.28
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.27
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.25
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.25
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.25
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.16
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.12
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.11
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.09
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.06
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.06
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.0
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.96
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	92.94
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.86
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	92.76
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.75
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.72
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.7
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.67
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.64
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.62
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.58
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.56
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.43
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	92.1
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.03
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.94
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	91.69
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.6
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	91.55
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.16
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	90.89
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	90.66
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.24
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	90.16
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.13
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.78
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.02
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.82
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.81
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.53
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.45
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	88.4
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	87.69
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	87.53
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	87.4
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	87.2
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	87.0
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	86.92
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.81
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	86.49
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	86.19
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	86.18
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	86.18
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.01
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	85.26
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	85.08
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.72
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	84.2
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	84.09
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	83.99
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	83.6
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.15
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	82.96
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	82.81
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	82.06
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	81.22
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	80.37
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	80.25

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8e-35  Score=270.12  Aligned_cols=236  Identities=22%  Similarity=0.322  Sum_probs=184.3

Q ss_pred             cccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        127 GREERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      ++.+.++|+         ||+|++++++++.+.+.+ +.+++.|++++.+.++++|||||||||||++++++|++++.++
T Consensus         4 ~~~~~~t~~---------Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~   73 (256)
T d1lv7a_           4 EDQIKTTFA---------DVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF   73 (256)
T ss_dssp             ECSSCCCGG---------GSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             CCCCCCCHH---------HHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCE
Confidence            345667787         999999999999999876 8889999999999999999999999999999999999999999


Q ss_pred             hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhH---------HHHHHHhhcCCCcEEEeccCHH
Q psy11689        207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYR---------EQTADNAKKPRIPRTNGGYREQ  277 (390)
Q Consensus       207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~---------~~~~~~~~~~~~~~i~~~~~~~  277 (390)
                      +.++++++.+.|.|+++++++++|..|+.++||||||||+|.++..+..         ......+... +......+++.
T Consensus        74 ~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~-~d~~~~~~~v~  152 (256)
T d1lv7a_          74 FTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE-MDGFEGNEGII  152 (256)
T ss_dssp             EEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHH-HHTCCSSSCEE
T ss_pred             EEEEhHHhhhcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHH-hhCCCCCCCEE
Confidence            9999999999999999999999999999999999999999998865421         1111111100 00011234566


Q ss_pred             HHHhcCchhHHHhHH-----Hh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHH
Q psy11689        278 TADTANKPRIQRTKR-----EY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPR  349 (390)
Q Consensus       278 ~i~~t~~~~~~r~~~-----~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~  349 (390)
                      +|+|||+|+.+.+.+     +.   ...+|+...|..|+.... .+.....++++..+++.|+||+  |+||++++++|+
T Consensus       153 vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l-~~~~~~~~~~~~~la~~t~G~s--~adi~~l~~~A~  229 (256)
T d1lv7a_         153 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM-RRVPLAPDIDAAIIARGTPGFS--GADLANLVNEAA  229 (256)
T ss_dssp             EEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-TTSCBCTTCCHHHHHHTCTTCC--HHHHHHHHHHHH
T ss_pred             EEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhc-cCCCcCcccCHHHHHHhCCCCC--HHHHHHHHHHHH
Confidence            788888876643322     11   122556777877764332 2233357799999999999999  999999999999


Q ss_pred             HHHHHccccccChhhhhhhHHHHhcCc
Q psy11689        350 IQRTKREYREQTADTANKPRIQRIGNL  376 (390)
Q Consensus       350 ~~a~~r~~~~i~~~~~~~~~~~~~~~~  376 (390)
                      +.|++++...++++||.+|..+.+.|+
T Consensus       230 ~~a~~~~~~~i~~~d~~~Al~rv~~g~  256 (256)
T d1lv7a_         230 LFAARGNKRVVSMVEFEKAKDKIMMGL  256 (256)
T ss_dssp             HHHHHTTCSSBCHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCCccCHHHHHHHHHHHhcCC
Confidence            999999999999999999999999885

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.8e-34  Score=263.67  Aligned_cols=228  Identities=21%  Similarity=0.327  Sum_probs=177.9

Q ss_pred             ccCccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        128 REERRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      +.|++.|+         ||+|++++|+.|++++.. +.+++.|++++...++++||+||||||||++++++|++++.+++
T Consensus         2 ~~p~~~~~---------di~G~~~~k~~l~~~i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~   71 (247)
T d1ixza_           2 EAPKVTFK---------DVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI   71 (247)
T ss_dssp             CCCSCCGG---------GCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             CCCCCcHH---------HHccHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEE
Confidence            45677888         999999999999998876 88999999999999999999999999999999999999999999


Q ss_pred             ccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHH---------HHHhhcCCCcEEEeccCHHH
Q psy11689        208 AASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQT---------ADNAKKPRIPRTNGGYREQT  278 (390)
Q Consensus       208 ~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~---------~~~~~~~~~~~i~~~~~~~~  278 (390)
                      .++++++.+.|+|++++.++++|..|+.++||||||||+|.++..+.....         ...+... +..+....++.+
T Consensus        72 ~i~~~~l~~~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~-~d~~~~~~~viv  150 (247)
T d1ixza_          72 TASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDGFEKDTAIVV  150 (247)
T ss_dssp             EEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHH-HHTCCTTCCEEE
T ss_pred             EEEhHHhhhccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHH-hhCCCCCCCEEE
Confidence            999999999999999999999999999999999999999999876533211         1111000 000011233455


Q ss_pred             HHhcCchhHHHhHH-----Hh---hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHH
Q psy11689        279 ADTANKPRIQRTKR-----EY---REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRI  350 (390)
Q Consensus       279 i~~t~~~~~~r~~~-----~~---l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~  350 (390)
                      ++|||+++.+.+.+     +.   .-..|+...|..|+..... +.....++++..+|++|+||+  |+||.++|+.|++
T Consensus       151 i~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~-~~~~~~~~~~~~la~~t~g~s--~~di~~lv~~A~l  227 (247)
T d1ixza_         151 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR-GKPLAEDVDLALLAKRTPGFV--GADLENLLNEAAL  227 (247)
T ss_dssp             EEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCC--HHHHHHHHHHHHH
T ss_pred             EEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhc-ccCCccccCHHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence            67888776543322     11   1124567778777643322 233457789999999999999  9999999999999


Q ss_pred             HHHHccccccChhhhhhhH
Q psy11689        351 QRTKREYREQTADTANKPR  369 (390)
Q Consensus       351 ~a~~r~~~~i~~~~~~~~~  369 (390)
                      .|++++...++++||.+|.
T Consensus       228 ~a~~~~~~~i~~~d~~~A~  246 (247)
T d1ixza_         228 LAAREGRRKITMKDLEEAA  246 (247)
T ss_dssp             HHHHTTCSSBCHHHHHHHT
T ss_pred             HHHHcCCCCcCHHHHHHhh
Confidence            9999999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-33  Score=261.25  Aligned_cols=221  Identities=22%  Similarity=0.337  Sum_probs=175.5

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQ  224 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~  224 (390)
                      ||+|++.+|++|++.+.+|+.+++.|+++++++++++|||||||||||++++++|.+++.+++.++++.+.+.+.|..+.
T Consensus         5 dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~   84 (258)
T d1e32a2           5 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES   84 (258)
T ss_dssp             GCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTHHHH
T ss_pred             hhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHH------HHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhHHH-----
Q psy11689        225 NVTQLFHRARLAAPAILFIDEIERTYNCEYREQ------TADNAKKPRIPRTNGGYREQTADTANKPRIQRTKRE-----  293 (390)
Q Consensus       225 ~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~------~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~-----  293 (390)
                      .++.+|..|...+||||||||+|.++..+....      ....+.. .........++.+++|||+++.+.+.+.     
T Consensus        85 ~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRf  163 (258)
T d1e32a2          85 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLT-LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRF  163 (258)
T ss_dssp             HHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHH-HHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSS
T ss_pred             HHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhcc-ccccccccCCccEEEeCCCccccchhhhhcccc
Confidence            999999999999999999999999998875421      1111111 0001112233456778887765433221     


Q ss_pred             ---hhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccc------------
Q psy11689        294 ---YREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYR------------  358 (390)
Q Consensus       294 ---~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~------------  358 (390)
                         ....+|+...|..|+..... ......++++..||++|+||+  |+||+++|++|++.|++|...            
T Consensus       164 d~~i~~~~P~~~~R~~il~~~l~-~~~~~~~~~~~~la~~t~G~s--~adl~~lv~~A~~~a~~~~~~~~~~~~~~~~~~  240 (258)
T d1e32a2         164 DREVDIGIPDATGRLEILQIHTK-NMKLADDVDLEQVANETHGHV--GADLAALCSEAALQAIRKKMDLIDLEDETIDAE  240 (258)
T ss_dssp             CEEEECCCCCHHHHHHHHHHTTT-TSCBCTTCCHHHHHHHCTTCC--HHHHHHHHHHHHHHHHHHHHHHHCCCSSCCBHH
T ss_pred             cceeECCCCCHHHHHHHhhhhcc-CcccccccchhhhhhcccCCC--HHHHHHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence               11225677888888644332 223356789999999999999  999999999999999887532            


Q ss_pred             -----ccChhhhhhhH
Q psy11689        359 -----EQTADTANKPR  369 (390)
Q Consensus       359 -----~i~~~~~~~~~  369 (390)
                           .++++||.+|.
T Consensus       241 ~~~~~~it~~Df~~AL  256 (258)
T d1e32a2         241 VMNSLAVTMDDFRWAL  256 (258)
T ss_dssp             HHHHCCBCHHHHHHHH
T ss_pred             hhccCccCHHHHHHHh
Confidence                 36777877765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2e-30  Score=241.79  Aligned_cols=209  Identities=22%  Similarity=0.429  Sum_probs=164.8

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHH
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAE  223 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~  223 (390)
                      +||+|+++++++|.+.+.+++.+++.|.++++++++++|||||||||||+|++++|.+++.+++.++++++.+.+.|..+
T Consensus         7 ~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~~~~~   86 (265)
T d1r7ra3           7 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE   86 (265)
T ss_dssp             SSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCTTTHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhccccchH
Confidence            39999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHH---------HHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhH---
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYRE---------QTADNAKKPRIPRTNGGYREQTADTANKPRIQRTK---  291 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~---------~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~---  291 (390)
                      +.++.+|..|+.++||||+|||+|.++..+...         .....+.. .+..+...+++.+++|||+++.+.+.   
T Consensus        87 ~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~-~l~~~~~~~~v~vi~ttn~~~~ld~al~r  165 (265)
T d1r7ra3          87 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT-EMDGMSTKKNVFIIGATNRPDIIDPAILR  165 (265)
T ss_dssp             HHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHH-TCC------CCEEEECCBSCTTTSCGGGS
T ss_pred             HHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHH-HhhCcCCCCCEEEEEeCCCchhCCHHHhC
Confidence            999999999999999999999999999876421         11111111 23333344556778888887653222   


Q ss_pred             --H---HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHcc
Q psy11689        292 --R---EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKRE  356 (390)
Q Consensus       292 --~---~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~  356 (390)
                        +   ......|+...|..|+..... ......+++++.++++|+||+  |+||+++|++|.+.|+++.
T Consensus       166 ~gRf~~~i~~~~p~~~~R~~il~~~l~-~~~~~~~~~l~~la~~t~g~s--~~di~~lv~~A~~~A~~~~  232 (265)
T d1r7ra3         166 PGRLDQLIYIPLPDEKSRVAILKANLR-KSPVAKDVDLEFLAKMTNGFS--GADLTEICQRACKLAIRES  232 (265)
T ss_dssp             STTSEEEEECCCCCCHHHHHHHHHHTT-CC----CCCCHHHHHHHCSSC--CHHHHHHHHHHHHHHHHHC
T ss_pred             CCCccEEEEecchHHHHHHHHHHHHhc-cCCchhhhhHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHHH
Confidence              2   112225567888888743322 223356799999999999999  9999999999999998774

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.79  E-value=1.3e-20  Score=172.85  Aligned_cols=198  Identities=12%  Similarity=0.095  Sum_probs=121.8

Q ss_pred             CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhH
Q psy11689        143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA  222 (390)
Q Consensus       143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~  222 (390)
                      .+.+.|..+..+.+.+.....   .+..++....++++||||||||||||++|+++|++++++++.+++++.+.++.+..
T Consensus         8 ~~~~i~~~~~i~~i~~~~~~~---~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~   84 (246)
T d1d2na_           8 MNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA   84 (246)
T ss_dssp             TTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred             ccCCcCcCHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccc
Confidence            335555444444443333322   22233444567899999999999999999999999999999999988887777665


Q ss_pred             H-HHHHHHHHHHHhcCCeEEEEcCCCCCCChhh-----HHHHHHHhhcCCCcEEEeccCHHHHHhcCchhHHHhH-H---
Q psy11689        223 E-QNVTQLFHRARLAAPAILFIDEIERTYNCEY-----REQTADNAKKPRIPRTNGGYREQTADTANKPRIQRTK-R---  292 (390)
Q Consensus       223 ~-~~i~~~f~~A~~~~p~il~lDEid~~l~~r~-----~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~-~---  292 (390)
                      + +.++++|..|+..+||||||||+|.+++.+.     .+.....+....-.....++++.+++|||+++.+... +   
T Consensus        85 ~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~r  164 (246)
T d1d2na_          85 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNA  164 (246)
T ss_dssp             HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTT
T ss_pred             hhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhcCc
Confidence            4 6799999999999999999999999876432     2222222221111111123455667888887765322 1   


Q ss_pred             -HhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHH
Q psy11689        293 -EYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTAN  346 (390)
Q Consensus       293 -~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~  346 (390)
                       .....+|....+..++.  ...+.....+.++..+++.+.|++.+. .++.++.
T Consensus       165 F~~~i~~P~~~~r~~il~--~l~~~~~~~~~~~~~i~~~~~g~~~~~-~ik~ll~  216 (246)
T d1d2na_         165 FSTTIHVPNIATGEQLLE--ALELLGNFKDKERTTIAQQVKGKKVWI-GIKKLLM  216 (246)
T ss_dssp             SSEEEECCCEEEHHHHHH--HHHHHTCSCHHHHHHHHHHHTTSEEEE-CHHHHHH
T ss_pred             cceEEecCCchhHHHHHH--HHHhccCCChHHHHHHHHHcCCCccch-hHHHHHH
Confidence             11122455445544431  111122233455677888888865221 2455543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.74  E-value=6.1e-22  Score=187.17  Aligned_cols=204  Identities=12%  Similarity=0.053  Sum_probs=122.9

Q ss_pred             ccCHHHhhhcCCCCCceEEE-EcCCCChHHHHHHHHHHhhc--cchhccccccccCcchhhHHHHHHHHHHHHHhcCCeE
Q psy11689        164 FKYAREFERLAIPKPKGILL-YGPPGCAKTSLVRTLAAHSV--YRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAI  240 (390)
Q Consensus       164 ~~~~~~~~~~~~~~~~~vLl-~GppGtGKT~La~aia~~~~--~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~i  240 (390)
                      ...+..++.++...+++++| +||||||||+||+++|.+++  .+++.+++++++++|.|+.++.++.+|..|+.  |+|
T Consensus       108 ~~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~~i  185 (321)
T d1w44a_         108 GCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRV  185 (321)
T ss_dssp             SBCCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CSE
T ss_pred             ccchHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--ccE
Confidence            34566677777677777655 89999999999999999987  67889999999999999999999999999974  899


Q ss_pred             EEEcCCCCCCChhhHHHHHHH---hhcCCCcEE---EeccCHHHHHhcCchhHHHhHHHhhhhcCCchhHHHhhcccccc
Q psy11689        241 LFIDEIERTYNCEYREQTADN---AKKPRIPRT---NGGYREQTADTANKPRIQRTKREYREQTADTAHKTRISRTNRGY  314 (390)
Q Consensus       241 l~lDEid~~l~~r~~~~~~~~---~~~~~~~~i---~~~~~~~~i~~t~~~~~~r~~~~~l~~l~~~~~r~~I~~~n~~~  314 (390)
                      |||||+|++.+.+........   ..+..++..   .....+.++++||+.++...+...+.+. ++.++.+.  .    
T Consensus       186 lf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~~~~~~i~~~~~r~-~Rf~~~v~--v----  258 (321)
T d1w44a_         186 IVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEA-SRSNSTSL--V----  258 (321)
T ss_dssp             EEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCCCCCHHHHHHHHHH-HHHSCSEE--E----
T ss_pred             EEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCCcccccchhhhhhcc-Ccccceee--c----
Confidence            999999999988754322110   000000000   0112234456666421111010000000 00000000  0    


Q ss_pred             cCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcCcc
Q psy11689        315 REKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGNLS  377 (390)
Q Consensus       315 r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~~~  377 (390)
                       ..+..+..+.-+...+.||..-++++.++++.++..++......+.+..+.+++...|-|.+
T Consensus       259 -~~pd~~~r~~il~~~~~~~~~~~~~l~~~~~~~a~la~~~~~~~~~~~~~~~Ai~~via~~e  320 (321)
T d1w44a_         259 -ISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEHSVLTIHTSKQSGGKQASGKAIQTVIKNDE  320 (321)
T ss_dssp             -EECSSTTEEEEEEECBTTCCEEEEEEEEEECGGGCEEECCC------CEECHHHHHHHHHTT
T ss_pred             -CCCChHHHHHHHHHhccCccccchhhhhccCHHHHHHHHhccccchhhhHHHHHHHHHcCCC
Confidence             00111122444567788884338899999999999988888889999999999888876654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.56  E-value=4.6e-16  Score=146.89  Aligned_cols=109  Identities=23%  Similarity=0.293  Sum_probs=87.7

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc--Ccchhh
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERL-AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY--SPYVGE  221 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~--~~~~g~  221 (390)
                      .|.|.+++++.+..++..++++....... .-.++.++||+||||||||.||+++|+.++.+++.++.+++.  +.+.+.
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~   94 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE   94 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeee
Confidence            58999999999998885544333222111 123678999999999999999999999999999999999987  447788


Q ss_pred             HHHHHHHHHHHHHh-----cCCeEEEEcCCCCCCChh
Q psy11689        222 AEQNVTQLFHRARL-----AAPAILFIDEIERTYNCE  253 (390)
Q Consensus       222 ~~~~i~~~f~~A~~-----~~p~il~lDEid~~l~~r  253 (390)
                      .+..++.+|..|..     .+||||||||+|++.+.+
T Consensus        95 ~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~  131 (309)
T d1ofha_          95 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG  131 (309)
T ss_dssp             TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCS
T ss_pred             ccccccccchhhhcccccccCCceEEehhhhhhhhhc
Confidence            88899999998754     368999999999998653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=5.9e-15  Score=133.29  Aligned_cols=208  Identities=17%  Similarity=0.160  Sum_probs=124.6

Q ss_pred             CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhH
Q psy11689        143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA  222 (390)
Q Consensus       143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~  222 (390)
                      +++++|.+++++.+..++..+..     .   -....++|||||||||||++|+++|++++.++..++......      
T Consensus         8 ~~divGqe~~~~~l~~~i~~~~~-----~---~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~------   73 (238)
T d1in4a2           8 LDEFIGQENVKKKLSLALEAAKM-----R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------   73 (238)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHH-----H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------
T ss_pred             HHHcCChHHHHHHHHHHHHHHHh-----c---CCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCccccc------
Confidence            33999999999999999865311     1   134568999999999999999999999999988776655432      


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcCCCcEE-----------EeccCHHHHHhcCchhHH-Hh
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKPRIPRT-----------NGGYREQTADTANKPRIQ-RT  290 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~~~~~i-----------~~~~~~~~i~~t~~~~~~-r~  290 (390)
                      ...+..++..  ....+++++||++.+-... .+.....+........           ....+...+.+|+++... ..
T Consensus        74 ~~~~~~~~~~--~~~~~~~~ide~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~  150 (238)
T d1in4a2          74 QGDMAAILTS--LERGDVLFIDEIHRLNKAV-EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSP  150 (238)
T ss_dssp             HHHHHHHHHH--CCTTCEEEEETGGGCCHHH-HHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHH
T ss_pred             HHHHHHHHHh--hccCCchHHHHHHHhhhHH-HhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCcccccc
Confidence            1233334333  4556899999999975432 2222222222111000           011223334455554332 12


Q ss_pred             HHHh-----hhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhh
Q psy11689        291 KREY-----REQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTA  365 (390)
Q Consensus       291 ~~~~-----l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~  365 (390)
                      .+..     ....++..++..++...........++..+..+++.+.| +  ++++.+++..++..+...+...+|.+.+
T Consensus       151 ~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~g-d--~R~ai~~l~~~~~~~~~~~~~~it~~~~  227 (238)
T d1in4a2         151 LRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-T--PRIAIRLTKRVRDMLTVVKADRINTDIV  227 (238)
T ss_dssp             HHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-C--HHHHHHHHHHHHHHHHHHTCSSBCHHHH
T ss_pred             ceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCC-C--HHHHHHHHHHHHHHHHHhcCCccCHHHH
Confidence            2211     112333444444432222222222233346677887766 5  7888888888888888888889999998


Q ss_pred             hhhHH
Q psy11689        366 NKPRI  370 (390)
Q Consensus       366 ~~~~~  370 (390)
                      .++..
T Consensus       228 ~~al~  232 (238)
T d1in4a2         228 LKTME  232 (238)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=8.7e-15  Score=132.35  Aligned_cols=209  Identities=16%  Similarity=0.097  Sum_probs=122.9

Q ss_pred             CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhH
Q psy11689        143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEA  222 (390)
Q Consensus       143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~  222 (390)
                      |+++.|.+++++++..++.....        .-.++.++||+||||||||++|+++|+++++++..+++.....  .+..
T Consensus         8 ~ddivGq~~~~~~L~~~i~~~~~--------~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~--~~~~   77 (239)
T d1ixsb2           8 LDEYIGQERLKQKLRVYLEAAKA--------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--PGDL   77 (239)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHTT--------SSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCS--HHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCcccc--chhh
Confidence            44999999999999998865321        1235678999999999999999999999999988777655422  1111


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC-----------CCcEEEeccCHHHHHhcCchhH----
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP-----------RIPRTNGGYREQTADTANKPRI----  287 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~-----------~~~~i~~~~~~~~i~~t~~~~~----  287 (390)
                      ...    ... .....+|+++||++.+... ........+...           ..+......+..++.+|+++..    
T Consensus        78 ~~~----~~~-~~~~~~i~~iDe~~~~~~~-~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  151 (239)
T d1ixsb2          78 AAI----LAN-SLEEGDILFIDEIHRLSRQ-AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP  151 (239)
T ss_dssp             HHH----HHT-TCCTTCEEEEETGGGCCHH-HHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCG
T ss_pred             HHH----HHh-hccCCCeeeeecccccchh-HHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcccccch
Confidence            111    111 2234579999999987543 222222222111           1112222233334445544322    


Q ss_pred             -HHh-HHHhhhhcCCchhHHHhhcccccccCCCCCCCCcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhh
Q psy11689        288 -QRT-KREYREQTADTAHKTRISRTNRGYREKTADTANKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTA  365 (390)
Q Consensus       288 -~r~-~~~~l~~l~~~~~r~~I~~~n~~~r~~~~~~vdl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~  365 (390)
                       ++. ........+....+..++...........+.-.+..+++.+.| +  .++..++++.+...|...+...||.+++
T Consensus       152 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~g-d--~R~a~~~l~~~~~~a~~~~~~~It~~~~  228 (239)
T d1ixsb2         152 LLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-T--MRVAKRLFRRVRDFAQVAGEEVITRERA  228 (239)
T ss_dssp             GGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTS-S--HHHHHHHHHHHHHHHTTSCCSCBCHHHH
T ss_pred             hhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCC-C--HHHHHHHHHHHHHHHHHhCCCCcCHHHH
Confidence             111 1111112333344443322111111112222345678888887 4  6777788888888887788889999999


Q ss_pred             hhhHH
Q psy11689        366 NKPRI  370 (390)
Q Consensus       366 ~~~~~  370 (390)
                      .++..
T Consensus       229 ~~~l~  233 (239)
T d1ixsb2         229 LEALA  233 (239)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88763

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=5.2e-13  Score=121.10  Aligned_cols=121  Identities=18%  Similarity=0.230  Sum_probs=80.9

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHHhccccCHH-Hh---hhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAR-EF---ERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~-~~---~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .|.++|.+..++++.|.+..++++.+++........ .+   ...+.....++||+||||||||++|+++|++.+.+++.
T Consensus         3 lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~   82 (253)
T d1sxja2           3 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE   82 (253)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             ccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhc
Confidence            477778888889999999999999998865222111 11   12234456789999999999999999999999999888


Q ss_pred             cccccccCcchhhHH-HH-HH----------HHHHHHHhcCCeEEEEcCCCCCCChh
Q psy11689        209 ASAAQLYSPYVGEAE-QN-VT----------QLFHRARLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       209 i~~~~~~~~~~g~~~-~~-i~----------~~f~~A~~~~p~il~lDEid~~l~~r  253 (390)
                      ++.++..+.+..... +. +.          ..........+.++++||++.+....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~  139 (253)
T d1sxja2          83 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD  139 (253)
T ss_dssp             ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS
T ss_pred             cccccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccch
Confidence            877665443221100 00 00          00001122346799999999887543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.31  E-value=1.9e-15  Score=145.27  Aligned_cols=197  Identities=14%  Similarity=0.075  Sum_probs=112.8

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcc-hhhHHHHHHHHHHHH------HhcCCeEEEEcCC
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPY-VGEAEQNVTQLFHRA------RLAAPAILFIDEI  246 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~-~g~~~~~i~~~f~~A------~~~~p~il~lDEi  246 (390)
                      +++.+++++|+||||||||++++++|+.++.+++.+++++..+.+ .+........+|..|      ....|+++++||+
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~Dei  229 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNL  229 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehH
Confidence            567788999999999999999999999999999999887765443 222222222233333      2345677777777


Q ss_pred             CCCCChhhHHHHHHHhhcCCCcEEEeccCHHHHHhcCchh--HHHhHHHhhhh--cCCchhHHHhhcccccccCCCCCCC
Q psy11689        247 ERTYNCEYREQTADNAKKPRIPRTNGGYREQTADTANKPR--IQRTKREYREQ--TADTAHKTRISRTNRGYREKTADTA  322 (390)
Q Consensus       247 d~~l~~r~~~~~~~~~~~~~~~~i~~~~~~~~i~~t~~~~--~~r~~~~~l~~--l~~~~~r~~I~~~n~~~r~~~~~~v  322 (390)
                      |.+....... ....+.....+......++ ++.|||+..  ..+++++....  .+.......+.......+.... ..
T Consensus       230 D~l~~~~dg~-~~~~~~~~~~~~~~~~~~p-~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l-~~  306 (362)
T d1svma_         230 DNLRDYLDGS-VKVNLEKKHLNKRTQIFPP-GIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRII-QS  306 (362)
T ss_dssp             HTTHHHHHCS-SCEEECCSSSCCEEECCCC-EEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCT-TC
T ss_pred             hhcccccCCc-chhhhhhhhhchhhhccCC-ceeecccccccccccccCceEEeecCCCcHHHHHHHHHHHhcccCC-CC
Confidence            7653221110 0000000111111111121 356777533  33444422222  1111111111111111111111 35


Q ss_pred             CcchhhhcCCCCCCCcHHHHHHHHHHHHHHHHccccccChhhhhhhHHHHhcC
Q psy11689        323 NKPRIPRTNRGYREYSAQNANTANKPRIQRTKREYREQTADTANKPRIQRIGN  375 (390)
Q Consensus       323 dl~~la~~t~gfs~~gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~~~~~  375 (390)
                      +.+.++..+.||+  |+|+.++++.++..+.++...+++...+.....+..-|
T Consensus       307 ~~~~L~~li~~~s--~~D~~~~i~~~~~~~~~~l~~ei~~~~~~~~k~~I~~G  357 (362)
T d1svma_         307 GIALLLMLIWYRP--VAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAMG  357 (362)
T ss_dssp             HHHHHHHHHHHSC--GGGSCGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHccCCC--HHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHcC
Confidence            5677888899999  99999999999999988888888888887766554333

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=3.8e-13  Score=120.25  Aligned_cols=118  Identities=20%  Similarity=0.182  Sum_probs=72.2

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch-----
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV-----  206 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~-----  206 (390)
                      +.|.+++.+..++|+.|.+++++.++.++...             ...++||+||||+|||++++++|++++...     
T Consensus         2 ~pw~ekyrP~~~~divg~~~~~~~L~~~i~~~-------------~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~   68 (227)
T d1sxjc2           2 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEG-------------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV   68 (227)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred             CchhhhhCCCCHHHccCcHHHHHHHHHHHHcC-------------CCCeEEEECCCCCChhHHHHHHHHHhhcCCCccee
Confidence            46888888889999999999999999887541             223599999999999999999999875322     


Q ss_pred             hccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh
Q psy11689        207 LAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK  263 (390)
Q Consensus       207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~  263 (390)
                      .....++..+.............+......+..++++||++.+... ........+.
T Consensus        69 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~-~~~~Ll~~le  124 (227)
T d1sxjc2          69 LELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-AQNALRRVIE  124 (227)
T ss_dssp             EEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-HHHHHHHHHH
T ss_pred             EEecccccCCeeeeecchhhccccccccCCCeEEEEEeccccchhh-HHHHHHHHhh
Confidence            1222222211110000000000111112233469999999986543 3333444443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.24  E-value=6.6e-12  Score=112.39  Aligned_cols=103  Identities=18%  Similarity=0.222  Sum_probs=72.3

Q ss_pred             cccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----ch
Q psy11689        132 RDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----RV  206 (390)
Q Consensus       132 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----~~  206 (390)
                      -.|.++|.+..++|+.|.+..++.+..++..             ....++||+||||+|||++|+++|++.+.     ++
T Consensus        12 ~~w~~ky~P~~~~diig~~~~~~~l~~~i~~-------------~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~   78 (231)
T d1iqpa2          12 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNF   78 (231)
T ss_dssp             SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred             chHHHHhCCCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCe
Confidence            4588889888999999999999999998853             13346999999999999999999998754     33


Q ss_pred             hccccccccCcchhhHHHHHHHHHHHH------HhcCCeEEEEcCCCCCCChh
Q psy11689        207 LAASAAQLYSPYVGEAEQNVTQLFHRA------RLAAPAILFIDEIERTYNCE  253 (390)
Q Consensus       207 ~~i~~~~~~~~~~g~~~~~i~~~f~~A------~~~~p~il~lDEid~~l~~r  253 (390)
                      +.+++++...      ...++..+...      ....+.|+++||++.+....
T Consensus        79 ~e~n~s~~~~------~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~  125 (231)
T d1iqpa2          79 LELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA  125 (231)
T ss_dssp             EEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHH
T ss_pred             eEEecCcccc------hhHHHHHHHHHHhhhhccCCCceEEeehhhhhcchhH
Confidence            3444332111      11112222221      23467899999999876543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.18  E-value=1.8e-10  Score=104.13  Aligned_cols=224  Identities=12%  Similarity=0.042  Sum_probs=116.2

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----cchhccccccccC---
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----YRVLAASAAQLYS---  216 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----~~~~~i~~~~~~~---  216 (390)
                      +.+.|-+...+.+.+++...+..+      + .++.+++|+||||||||+++++++..+.    ..++.+.+.....   
T Consensus        16 ~~l~~Re~ei~~l~~~l~~~l~~~------~-~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~   88 (276)
T d1fnna2          16 KRLPHREQQLQQLDILLGNWLRNP------G-HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA   88 (276)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHST------T-SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCC------C-CCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhh
Confidence            367888888888888776432221      1 3577899999999999999999998763    3333332221110   


Q ss_pred             -------------cchhhHH-HHHHHHHHHH-HhcCCeEEEEcCCCCCCChhhHHHHH-----HHhhcCCCcEEEeccCH
Q psy11689        217 -------------PYVGEAE-QNVTQLFHRA-RLAAPAILFIDEIERTYNCEYREQTA-----DNAKKPRIPRTNGGYRE  276 (390)
Q Consensus       217 -------------~~~g~~~-~~i~~~f~~A-~~~~p~il~lDEid~~l~~r~~~~~~-----~~~~~~~~~~i~~~~~~  276 (390)
                                   ...+... .....+.... ....+.++++|+++.+..........     .......+..+..+...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  168 (276)
T d1fnna2          89 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND  168 (276)
T ss_dssp             HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred             hhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCch
Confidence                         1111111 2222233333 34457788999999876554322110     01111222223333322


Q ss_pred             HHHHhcCchhHHHhHHHhhhhcC--CchhHHHhhccc--ccccCCCCCCCCcchhhhcCCC---CCCC---cHHHHHHHH
Q psy11689        277 QTADTANKPRIQRTKREYREQTA--DTAHKTRISRTN--RGYREKTADTANKPRIPRTNRG---YREY---SAQNANTAN  346 (390)
Q Consensus       277 ~~i~~t~~~~~~r~~~~~l~~l~--~~~~r~~I~~~n--~~~r~~~~~~vdl~~la~~t~g---fs~~---gaDL~~l~~  346 (390)
                      .... .-.+++.+........++  +..+...|+...  ........++-.++.+++.+..   +..+   ...+.+++.
T Consensus       169 ~~~~-~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~  247 (276)
T d1fnna2         169 AVLN-NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILY  247 (276)
T ss_dssp             HHHH-TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHH
T ss_pred             hhhh-hcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHH
Confidence            2111 122222221111111223  233333332111  1001111122223445544321   1111   345667899


Q ss_pred             HHHHHHHHccccccChhhhhhhHHHHhcC
Q psy11689        347 KPRIQRTKREYREQTADTANKPRIQRIGN  375 (390)
Q Consensus       347 ~A~~~a~~r~~~~i~~~~~~~~~~~~~~~  375 (390)
                      +|+..|..++...|+.+|+.+|....++|
T Consensus       248 ~a~~~A~~~~~~~I~~edv~~A~~~~~~g  276 (276)
T d1fnna2         248 RSAYAAQQNGRKHIAPEDVRKSSKEVLFG  276 (276)
T ss_dssp             HHHHHHHHTTCSSCCHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence            99999999999999999999999988887

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=1.3e-10  Score=103.68  Aligned_cols=57  Identities=25%  Similarity=0.410  Sum_probs=47.3

Q ss_pred             ccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        133 DWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       133 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .|.+++.+..++++.|.++.++.++.++..             ....+++|+||||+|||++++++|+++
T Consensus         1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~-------------~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2           1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcchhhCCCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            366778888899999999999888877643             123459999999999999999999886

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.1e-10  Score=104.12  Aligned_cols=63  Identities=13%  Similarity=0.114  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhcC----CCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKKP----RIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~~----~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.+..+..+++|...+|.|+++||+.+.+|..+...+.+.+...    ..|.+.++|++..+..+++
T Consensus       154 GGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDr  220 (251)
T d1jj7a_         154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADH  220 (251)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSE
T ss_pred             hhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCE
Confidence            34666779999999999999999999999999988888777543    5789999999887776665

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.4e-10  Score=104.58  Aligned_cols=63  Identities=22%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.+..+..+++|...+|.|+++||+.+.+|..+...+.+.+..  ...|.+.++|++..+..+++
T Consensus       142 GGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~  206 (241)
T d2pmka1         142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADR  206 (241)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSE
T ss_pred             HHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCE
Confidence            3466677899999999999999999999999999888776644  36789999999876665554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.07  E-value=4e-10  Score=100.62  Aligned_cols=62  Identities=15%  Similarity=0.074  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCcEEEeccCHHHHHhcCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----KPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      .+..+..+++|....|.+|++||+.+.+|+.....+.+.+.    ..+.+.+.++|.+....-|++
T Consensus       149 GqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~dr  214 (230)
T d1l2ta_         149 GQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGER  214 (230)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSE
T ss_pred             HHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCE
Confidence            45566788999999999999999999999999887776553    347899999999865544444

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.07  E-value=9.6e-11  Score=105.78  Aligned_cols=63  Identities=22%  Similarity=0.167  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.+..+-.+++|...+|.|+++||+.+.+|..+.....+.+..  ...|.+.++|++..+..|++
T Consensus       142 GGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~  206 (242)
T d1mv5a_         142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADK  206 (242)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCE
Confidence            4466677999999999999999999999999887766665543  37899999999887776665

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.06  E-value=1.5e-10  Score=105.27  Aligned_cols=63  Identities=19%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc--CCCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK--PRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~--~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.+..+-.+++|...+|.|+++||+.+.+|..+...+.+.+..  ...|.+.++|++..+..+++
T Consensus       155 GGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~  219 (253)
T d3b60a1         155 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADE  219 (253)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCE
Confidence            3456677889999999999999999999999998888776643  36789999999876655554

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.06  E-value=3.5e-10  Score=101.54  Aligned_cols=62  Identities=18%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+..+..+++|...+|.||++||+.+.+|+.......+.+..    .+.+.+.++|.+..+.. |++
T Consensus       143 GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~dr  209 (240)
T d1g2912         143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDR  209 (240)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCE
Confidence            345556888999999999999999999999988877766543    38899999999877655 565

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.05  E-value=1.7e-10  Score=104.87  Aligned_cols=63  Identities=21%  Similarity=0.163  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh--cCCCcEEEeccCHHHHHhcCc
Q psy11689        222 AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK--KPRIPRTNGGYREQTADTANK  284 (390)
Q Consensus       222 ~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~--~~~~~~i~~~~~~~~i~~t~~  284 (390)
                      +.+..+-.+++|...+|.|+++||+.+.+|..++..+.+.+.  ....|.+.++|++..+..+++
T Consensus       157 gGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~  221 (255)
T d2hyda1         157 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADK  221 (255)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCE
Confidence            345667789999999999999999999999999888877764  346788999999877666654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=1.7e-10  Score=102.58  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=71.8

Q ss_pred             ccccccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchh---
Q psy11689        131 RRDWEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL---  207 (390)
Q Consensus       131 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~---  207 (390)
                      ++.|.+++.+..++|+.|.+++++.+..++..             ....++||+||||+|||++|+++|++++....   
T Consensus         2 ~~pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~-------------~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~   68 (224)
T d1sxjb2           2 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADG   68 (224)
T ss_dssp             CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred             CCchHhHhCCCCHHHhcCCHHHHHHHHHHHHc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhccccccc
Confidence            45699999999999999999999999988753             12335999999999999999999998875433   


Q ss_pred             --ccccccccCcchhhHHHHHHHHHHHHH-------hcCCeEEEEcCCCCCCCh
Q psy11689        208 --AASAAQLYSPYVGEAEQNVTQLFHRAR-------LAAPAILFIDEIERTYNC  252 (390)
Q Consensus       208 --~i~~~~~~~~~~g~~~~~i~~~f~~A~-------~~~p~il~lDEid~~l~~  252 (390)
                        .+++++..+      ...+...+....       .....++++||+|.+.+.
T Consensus        69 ~~~~n~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~  116 (224)
T d1sxjb2          69 VLELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG  116 (224)
T ss_dssp             EEEECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH
T ss_pred             cccccccccCC------ceehhhHHHHHHHhhccCCCcceEEEEEecccccchh
Confidence              333332211      122222222211       123569999999998765

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.04  E-value=4.3e-10  Score=100.19  Aligned_cols=113  Identities=17%  Similarity=0.223  Sum_probs=79.5

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHh------------------------hcc--------ch-------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAH------------------------SVY--------RV-------------  206 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~------------------------~~~--------~~-------------  206 (390)
                      ++.+.++..+.|.||+|||||||+++++.-                        .++        +.             
T Consensus        20 s~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~   99 (229)
T d3d31a2          20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM   99 (229)
T ss_dssp             EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhh
Confidence            466889999999999999999999999911                        000        00             


Q ss_pred             -------------hccccccccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCC
Q psy11689        207 -------------LAASAAQLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----KPRI  267 (390)
Q Consensus       207 -------------~~i~~~~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~  267 (390)
                                   -.+...++...+..  ++.+..+.++++|....|.+|++||+.+.+|+.......+.+.    ..++
T Consensus       100 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~  179 (229)
T d3d31a2         100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL  179 (229)
T ss_dssp             HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCc
Confidence                         00111111222221  1335556788999999999999999999999998887766553    3478


Q ss_pred             cEEEeccCHHHHHh-cCc
Q psy11689        268 PRTNGGYREQTADT-ANK  284 (390)
Q Consensus       268 ~~i~~~~~~~~i~~-t~~  284 (390)
                      +.+.++|.+..+.. |++
T Consensus       180 tii~vtHd~~~~~~~~dr  197 (229)
T d3d31a2         180 TVLHITHDQTEARIMADR  197 (229)
T ss_dssp             EEEEEESCHHHHHHHCSE
T ss_pred             EEEEEcCCHHHHHHhCCE
Confidence            99999999866554 554

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=9.1e-12  Score=113.90  Aligned_cols=80  Identities=28%  Similarity=0.388  Sum_probs=68.6

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      -++|+++|+||+++.+|+|++|              ||||+ +|++|. +.++|++|++.    .++.+++++ +.||+.
T Consensus       138 ~~~vlvi~tTn~~~~ld~al~r--------------~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~-~~la~~  202 (258)
T d1e32a2         138 RAHVIVMAATNRPNSIDPALRR--------------FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL-EQVANE  202 (258)
T ss_dssp             SSCEEEEEEESCGGGSCGGGTS--------------TTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCH-HHHHHH
T ss_pred             cCCccEEEeCCCccccchhhhh--------------cccccceeECCCCCHHHHHHHhhhhccCcccccccch-hhhhhc
Confidence            3568999999999999999998              99999 777777 46788888876    456788999 889999


Q ss_pred             hcCCccccccccccccchhhh
Q psy11689         83 EEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      |+||+|+||..+|.+|...+.
T Consensus       203 t~G~s~adl~~lv~~A~~~a~  223 (258)
T d1e32a2         203 THGHVGADLAALCSEAALQAI  223 (258)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHH
Confidence            999999999999998877643

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=5.8e-10  Score=102.75  Aligned_cols=113  Identities=17%  Similarity=0.085  Sum_probs=80.5

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc-----------------ch----------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY-----------------RV----------------------------  206 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~-----------------~~----------------------------  206 (390)
                      ++.+.++..+.|.||+|+|||||+++++.....                 +.                            
T Consensus        56 sl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~  135 (281)
T d1r0wa_          56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKAC  135 (281)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHT
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccchHHHHHHHHH
Confidence            567899999999999999999999999932100                 00                            


Q ss_pred             ----hccccccccCcch------hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc---CCCcEEEec
Q psy11689        207 ----LAASAAQLYSPYV------GEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK---PRIPRTNGG  273 (390)
Q Consensus       207 ----~~i~~~~~~~~~~------g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~---~~~~~i~~~  273 (390)
                          .....++......      =.+.+..+..+++|....|.|+++||+.+.+|........+.+..   ...+.+.++
T Consensus       136 ~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~it  215 (281)
T d1r0wa_         136 QLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT  215 (281)
T ss_dssp             TCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEEC
T ss_pred             HhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence                0000000000001      134466778999999999999999999999999888887765433   357889999


Q ss_pred             cCHHHHHhcCc
Q psy11689        274 YREQTADTANK  284 (390)
Q Consensus       274 ~~~~~i~~t~~  284 (390)
                      |++..+..|++
T Consensus       216 H~~~~l~~aDr  226 (281)
T d1r0wa_         216 SKMEHLRKADK  226 (281)
T ss_dssp             SCHHHHHTCSE
T ss_pred             chHHHHHhCCE
Confidence            99877776665

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=3e-10  Score=101.46  Aligned_cols=59  Identities=19%  Similarity=0.138  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhh----cCCCcEEEeccCHHHHHh-cCc
Q psy11689        226 VTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAK----KPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       226 i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~----~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+.++++|..+.|.+|++||+.+.+|+.......+.+.    ..+.+.+.++|.+..+.. |++
T Consensus       137 QRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dr  200 (232)
T d2awna2         137 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK  200 (232)
T ss_dssp             ---CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            34567789999999999999999999998877766553    358899999999876655 555

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.00  E-value=7.1e-10  Score=99.52  Aligned_cols=62  Identities=16%  Similarity=0.169  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+..+..+++|..++|.+|++||+.+.+|+.........+..    .+.+.+.++|.+..+.. |++
T Consensus       144 GqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dr  210 (242)
T d1oxxk2         144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADR  210 (242)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSE
T ss_pred             HHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCE
Confidence            345556888999999999999999999999988877765533    37899999999876654 554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=6.5e-10  Score=99.78  Aligned_cols=62  Identities=13%  Similarity=0.049  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+..+.++++|...+|.+|++||+.+.+|+.....+.+.+..    .+++.+.++|.+..+.. |++
T Consensus       144 G~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dr  210 (240)
T d3dhwc1         144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDC  210 (240)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSE
T ss_pred             HHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCE
Confidence            344556888999999999999999999999988877766543    37999999999877665 554

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.98  E-value=7e-10  Score=99.45  Aligned_cols=113  Identities=22%  Similarity=0.332  Sum_probs=78.0

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------------------cchh----------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------------------YRVL----------------------  207 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------------------~~~~----------------------  207 (390)
                      ++.+.+++.+.|.||+|||||||+++++....                      ..++                      
T Consensus        26 sl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~  105 (239)
T d1v43a3          26 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI  105 (239)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-
T ss_pred             eEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHH
Confidence            56788999999999999999999999992100                      0000                      


Q ss_pred             -----------------ccccccccCcchhh--HHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----
Q psy11689        208 -----------------AASAAQLYSPYVGE--AEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----  264 (390)
Q Consensus       208 -----------------~i~~~~~~~~~~g~--~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----  264 (390)
                                       .+...+....+..+  +.+..+..+++|...+|.||++||+.+.+|+.......+.+..    
T Consensus       106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~  185 (239)
T d1v43a3         106 KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK  185 (239)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHh
Confidence                             01111111111111  1133345788999999999999999999999988877665544    


Q ss_pred             CCCcEEEeccCHHHHHh-cCc
Q psy11689        265 PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       265 ~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+.+.+.++|.+..+.. |++
T Consensus       186 ~g~tii~vTHd~~~a~~~~dr  206 (239)
T d1v43a3         186 LKVTTIYVTHDQVEAMTMGDR  206 (239)
T ss_dssp             HTCEEEEEESCHHHHHHHCSE
T ss_pred             cCCeEEEEeCCHHHHHHhCCE
Confidence            38899999999877655 555

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=2.3e-11  Score=111.06  Aligned_cols=81  Identities=19%  Similarity=0.238  Sum_probs=69.3

Q ss_pred             hhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHH
Q psy11689          8 VCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQR   81 (390)
Q Consensus         8 ~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~   81 (390)
                      -..+|++||+||+++.+|++|+|              ||||+ .|++|. +.++|.+|++.    .+++.++++ +.||+
T Consensus       147 ~~~~v~vIatTn~~~~ld~al~R--------------~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~-~~la~  211 (256)
T d1lv7a_         147 GNEGIIVIAATNRPDVLDPALLR--------------PGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA-AIIAR  211 (256)
T ss_dssp             SSSCEEEEEEESCTTTSCGGGGS--------------TTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHH
T ss_pred             CCCCEEEEEeCCCcccCCHhHcC--------------CCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCH-HHHHH
Confidence            34569999999999999999988              99998 777777 46788888876    557789999 88999


Q ss_pred             hhcCCccccccccccccchhhh
Q psy11689         82 EEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        82 ~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      .|.||+|+||..+|.+|+....
T Consensus       212 ~t~G~s~adi~~l~~~A~~~a~  233 (256)
T d1lv7a_         212 GTPGFSGADLANLVNEAALFAA  233 (256)
T ss_dssp             TCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998876543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=6.2e-10  Score=100.09  Aligned_cols=115  Identities=14%  Similarity=0.130  Sum_probs=70.9

Q ss_pred             ccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhc--------
Q psy11689        137 EEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA--------  208 (390)
Q Consensus       137 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~--------  208 (390)
                      +|.+..|+|+.|.+++++.+...+...            ..+..+||+||||+|||++|++++.++..+...        
T Consensus         5 KyrP~~~~dlig~~~~~~~L~~~i~~~------------~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~   72 (239)
T d1njfa_           5 KWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC   72 (239)
T ss_dssp             HTCCSSGGGSCSCHHHHHHHHHHHHTT------------CCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred             hhCCCCHHHccChHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccc
Confidence            455566679999999999998887541            245679999999999999999999887543210        


Q ss_pred             -----cccc---ccc--CcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCCCCChhhHHHHHHHhhc
Q psy11689        209 -----ASAA---QLY--SPYVGEAEQNVTQLFHRARL----AAPAILFIDEIERTYNCEYREQTADNAKK  264 (390)
Q Consensus       209 -----i~~~---~~~--~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~~l~~r~~~~~~~~~~~  264 (390)
                           +..+   ++.  ..........++.++..+..    ....|+||||+|.+ .....+.....+..
T Consensus        73 ~~~~~i~~~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l-~~~~q~~Llk~lE~  141 (239)
T d1njfa_          73 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-SRHSFNALLKTLEE  141 (239)
T ss_dssp             HHHHHHHHTCCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-CHHHHHHHHHHHHS
T ss_pred             hHHHHHHcCCCCeEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccC-CHHHHHHHHHHHhc
Confidence                 0000   000  00000112335555555432    23469999999996 34444444455544

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.4e-09  Score=94.25  Aligned_cols=99  Identities=25%  Similarity=0.314  Sum_probs=76.4

Q ss_pred             CCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhccccc
Q psy11689        143 VPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAASAA  212 (390)
Q Consensus       143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~i~~~  212 (390)
                      ++.+.|-++..+++.+.+..             ....+++|+||||+|||+++..+|...          +..++.++..
T Consensus        21 ld~~igRd~Ei~~l~~iL~r-------------~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~   87 (195)
T d1jbka_          21 LDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG   87 (195)
T ss_dssp             SCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH
T ss_pred             CCCCcCcHHHHHHHHHHHhc-------------cCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHH
Confidence            34677878777777776643             356689999999999999999999643          3567778888


Q ss_pred             cccCc--chhhHHHHHHHHHHHHHhcC-CeEEEEcCCCCCCChhh
Q psy11689        213 QLYSP--YVGEAEQNVTQLFHRARLAA-PAILFIDEIERTYNCEY  254 (390)
Q Consensus       213 ~~~~~--~~g~~~~~i~~~f~~A~~~~-p~il~lDEid~~l~~r~  254 (390)
                      .+..+  |.|+.++.+..++..+.... ..|+||||+..+++...
T Consensus        88 ~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~  132 (195)
T d1jbka_          88 ALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK  132 (195)
T ss_dssp             HHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---
T ss_pred             HHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCC
Confidence            87744  56888899999999887665 67999999999997643

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=2.1e-09  Score=98.05  Aligned_cols=98  Identities=22%  Similarity=0.285  Sum_probs=77.5

Q ss_pred             CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh----------hccchhcccc
Q psy11689        142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH----------SVYRVLAASA  211 (390)
Q Consensus       142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~----------~~~~~~~i~~  211 (390)
                      .++.+.|-++..+++.+++..             ....+++|+||||+|||++++.+|..          .+..++.++.
T Consensus        16 ~ld~~igRd~Ei~~l~~iL~r-------------~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~   82 (268)
T d1r6bx2          16 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI   82 (268)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred             CCCcccChHHHHHHHHHHHhc-------------CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeee
Confidence            344677888877777777643             35678999999999999999999965          2345677888


Q ss_pred             ccccC--cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        212 AQLYS--PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       212 ~~~~~--~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      ..+..  +|.|+.++.++.++..+......|+|+||++.+++.
T Consensus        83 ~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~  125 (268)
T d1r6bx2          83 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGA  125 (268)
T ss_dssp             C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTS
T ss_pred             chHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcC
Confidence            88875  568889999999999999888999999999999864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.92  E-value=3.2e-10  Score=103.05  Aligned_cols=222  Identities=9%  Similarity=-0.027  Sum_probs=105.7

Q ss_pred             CCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccc---------hhccccccc
Q psy11689        144 PELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR---------VLAASAAQL  214 (390)
Q Consensus       144 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~---------~~~i~~~~~  214 (390)
                      +.+.|-++..+.+..++..+..+...-    -.....++|+||||||||+++++++.++...         +..+++...
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~~~~~~~----~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~   91 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRLLSGAGL----SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA   91 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCB----CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCC----CCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccc
Confidence            357777777788777664432221100    0122346788999999999999999876421         111221111


Q ss_pred             c----------------CcchhhHHHHHHHHHHH-HH-hcCCeEEEEcCCCCCCChhhH-HHHHHHh------hc-----
Q psy11689        215 Y----------------SPYVGEAEQNVTQLFHR-AR-LAAPAILFIDEIERTYNCEYR-EQTADNA------KK-----  264 (390)
Q Consensus       215 ~----------------~~~~g~~~~~i~~~f~~-A~-~~~p~il~lDEid~~l~~r~~-~~~~~~~------~~-----  264 (390)
                      .                ....+.....+...+.. .. ...+.++++||+|.+...... ......+      ..     
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~  171 (287)
T d1w5sa2          92 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV  171 (287)
T ss_dssp             CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred             cchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhhcc
Confidence            1                11122222232233332 22 345678899999987644321 1111111      10     


Q ss_pred             CCCcEEEeccCHHHHH--hcCchhHHHhHHHhhhhcC--CchhHHHhhcccccccCCCCCCCC---cchhhhcCCCCCCC
Q psy11689        265 PRIPRTNGGYREQTAD--TANKPRIQRTKREYREQTA--DTAHKTRISRTNRGYREKTADTAN---KPRIPRTNRGYREY  337 (390)
Q Consensus       265 ~~~~~i~~~~~~~~i~--~t~~~~~~r~~~~~l~~l~--~~~~r~~I~~~n~~~r~~~~~~vd---l~~la~~t~gfs~~  337 (390)
                      .....+..........  ....+.+.... .....++  +..+...|+.... ........++   ++.+|+.+..|...
T Consensus       172 ~~~~~i~i~~~~~~~~~~~~~~~~~~~r~-~~~i~f~~y~~~el~~Il~~r~-~~~~~~~~~~~~al~~ia~~~~~~~~~  249 (287)
T d1w5sa2         172 NRIGFLLVASDVRALSYMREKIPQVESQI-GFKLHLPAYKSRELYTILEQRA-ELGLRDTVWEPRHLELISDVYGEDKGG  249 (287)
T ss_dssp             CBEEEEEEEEETHHHHHHHHHCHHHHTTC-SEEEECCCCCHHHHHHHHHHHH-HHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred             cceeEEeecccHHHHHHHHhhccchhccc-ceeeeccCCcHHHHHHHHhhhH-HHhhccCCCCHHHHHHHHHHHhccccC
Confidence            1111222222111111  11111111100 0011122  2333344432211 1111111123   56677766543211


Q ss_pred             ---cHHHHHHHHHHHHHHHHccccccChhhhhhhHHH
Q psy11689        338 ---SAQNANTANKPRIQRTKREYREQTADTANKPRIQ  371 (390)
Q Consensus       338 ---gaDL~~l~~~A~~~a~~r~~~~i~~~~~~~~~~~  371 (390)
                         ....-+++..|+..|..++...||.+|+.+|.-+
T Consensus       250 ~gd~R~ai~~l~~a~~~A~~~~~~~It~~~V~~A~~e  286 (287)
T d1w5sa2         250 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE  286 (287)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhc
Confidence               3455678899999999999999999999998743

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=7e-11  Score=108.31  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=65.3

Q ss_pred             hhhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHH
Q psy11689          7 RVCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQ   80 (390)
Q Consensus         7 ~~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la   80 (390)
                      .-.++|+++|+||+++.+|+|++|              ||||+ +|++|. +.++|++|++.    ..+..++++ +.||
T Consensus       142 ~~~~~v~vi~ttn~~~~ld~al~r--------------~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l-~~la  206 (265)
T d1r7ra3         142 STKKNVFIIGATNRPDIIDPAILR--------------PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL-EFLA  206 (265)
T ss_dssp             ----CCEEEECCBSCTTTSCGGGS--------------STTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCC-HHHH
T ss_pred             CCCCCEEEEEeCCCchhCCHHHhC--------------CCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhH-HHHH
Confidence            335679999999999999988888              99999 788877 57788888876    446788999 9999


Q ss_pred             HhhcCCccccccccccccchhhh
Q psy11689         81 REEEGIAGENLQRGGGEEGIELR  103 (390)
Q Consensus        81 ~~t~G~~g~~l~~~~~ea~~~~~  103 (390)
                      +.|+||+++||..+|.++...+.
T Consensus       207 ~~t~g~s~~di~~lv~~A~~~A~  229 (265)
T d1r7ra3         207 KMTNGFSGADLTEICQRACKLAI  229 (265)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999988876543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=1.2e-10  Score=105.70  Aligned_cols=79  Identities=23%  Similarity=0.323  Sum_probs=68.3

Q ss_pred             hheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCC-CCccCcccccc----ccCCcccchHHHHHHh
Q psy11689          9 CNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPT-APQGRETELPF----TKLNEEVELSENVQRE   82 (390)
Q Consensus         9 ~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~-~~~~r~~~l~~----~~~~~~v~l~~~la~~   82 (390)
                      ..+|+++|+||+++.+|++++|              ||||+ .|++|. +.++|++|++.    .+..+++++ +.||+.
T Consensus       145 ~~~vivi~tTn~~~~ld~al~R--------------~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~-~~la~~  209 (247)
T d1ixza_         145 DTAIVVMAATNRPDILDPALLR--------------PGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL-ALLAKR  209 (247)
T ss_dssp             TCCEEEEEEESCGGGSCGGGGS--------------TTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCH-HHHHHT
T ss_pred             CCCEEEEEeCCCccccCHhHcC--------------CCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCH-HHHHHH
Confidence            3578999999999999988888              99999 777777 57788888876    467789999 899999


Q ss_pred             hcCCccccccccccccchhh
Q psy11689         83 EEGIAGENLQRGGGEEGIEL  102 (390)
Q Consensus        83 t~G~~g~~l~~~~~ea~~~~  102 (390)
                      |.||+|+||..+|.+|+...
T Consensus       210 t~g~s~~di~~lv~~A~l~a  229 (247)
T d1ixza_         210 TPGFVGADLENLLNEAALLA  229 (247)
T ss_dssp             CTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999998887654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.84  E-value=6.2e-09  Score=93.06  Aligned_cols=62  Identities=15%  Similarity=0.133  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHhhc----CCCcEEEeccCHHHHHh-cCc
Q psy11689        223 EQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNAKK----PRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       223 ~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~~~----~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+..+..+++|...+|.++++||+.+.+|+.......+.+..    .+.+.+.++|.+..+.. |++
T Consensus       130 G~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adr  196 (240)
T d2onka1         130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADE  196 (240)
T ss_dssp             HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCE
Confidence            345566888999999999999999999999988877766533    37899999999766554 554

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.83  E-value=5e-09  Score=94.18  Aligned_cols=61  Identities=13%  Similarity=0.017  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|....|.++++||+.+.+|+.......+.+   ...+.+.+..+|.+..+.. |++
T Consensus       144 ~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~dr  208 (240)
T d1ji0a_         144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHY  208 (240)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            444567889999999999999999999998887766544   3457899999999766544 554

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.82  E-value=8e-09  Score=93.72  Aligned_cols=61  Identities=15%  Similarity=0.044  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+.++++|...+|.+|++||+.+.+|......+.+.+   ...+.+.+.++|.+..+.. |+|
T Consensus       154 ~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adr  218 (258)
T d1b0ua_         154 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSH  218 (258)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSE
T ss_pred             HHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCE
Confidence            444568889999999999999999999998887666544   3457889999999877665 555

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=8.6e-09  Score=92.45  Aligned_cols=61  Identities=10%  Similarity=0.086  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+-.+++|..+.|.|+++||+.+.+|+.......+.+   ...+.+.+..+|.+..+.. |++
T Consensus       138 ~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~dr  202 (238)
T d1vpla_         138 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR  202 (238)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSE
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            444568889999999999999999999998877665544   3457899999999876664 454

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=4.4e-09  Score=98.45  Aligned_cols=100  Identities=19%  Similarity=0.221  Sum_probs=71.1

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc-------
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP-------  217 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~-------  217 (390)
                      .|.|.+++++.+...+......   +.+ .-.+...+||+||||+|||.||+++|...+.+++.++++++...       
T Consensus        23 ~viGQ~~a~~~v~~~v~~~~~~---l~~-~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~   98 (315)
T d1r6bx3          23 LVFGQDKAIEALTEAIKMARAG---LGH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI   98 (315)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTT---CSC-TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred             eecChHHHHHHHHHHHHHHHcc---CCC-CCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhc
Confidence            6899999999998887542111   010 11244579999999999999999999999999998888776422       


Q ss_pred             -----chhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy11689        218 -----YVGEAEQNVTQLFHRARLAAPAILFIDEIERTY  250 (390)
Q Consensus       218 -----~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l  250 (390)
                           |.|..+..  .+.......+.+|+++||+|..-
T Consensus        99 g~~~gy~g~~~~~--~l~~~~~~~~~~vvl~DeieKa~  134 (315)
T d1r6bx3          99 GAPPGYVGFDQGG--LLTDAVIKHPHAVLLLDEIEKAH  134 (315)
T ss_dssp             CCCSCSHHHHHTT--HHHHHHHHCSSEEEEEETGGGSC
T ss_pred             ccCCCccccccCC--hhhHHHHhCccchhhhccccccc
Confidence                 23332222  23444556777999999999863

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=7.2e-09  Score=92.90  Aligned_cols=57  Identities=19%  Similarity=0.332  Sum_probs=46.4

Q ss_pred             cccccCCCCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        134 WEGEEEGAFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       134 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      |.++|.+..++++.|.+++++.+...+...            ....++||+||||||||++++++|+++
T Consensus         1 W~eky~P~~~~diig~~~~~~~L~~~~~~~------------~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2           1 WVDKYRPKSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCcccCCCCHHHccCcHHHHHHHHHHHHcC------------CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            667788888889999999998887665431            123469999999999999999999875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.73  E-value=1.4e-08  Score=91.99  Aligned_cols=61  Identities=15%  Similarity=0.027  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh---hcCCCcEEEeccCHHHHHh-cCc
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA---KKPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~---~~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      +..+..+++|....|.+|++||+.+.+|+.......+.+   ...+.+.+.++|.+..+.. |++
T Consensus       155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Dr  219 (254)
T d1g6ha_         155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDH  219 (254)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSE
T ss_pred             HHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCE
Confidence            444568889999999999999999999998887766544   4457888999998755433 444

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=98.71  E-value=9.5e-09  Score=97.95  Aligned_cols=106  Identities=30%  Similarity=0.401  Sum_probs=71.7

Q ss_pred             CccChHHHHHHHHHHHhccccCHHH------------------hhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYARE------------------FERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .|.|.+++++.+..++...++....                  ..+ .-.++.++|+.||+|||||.||+++|..++.++
T Consensus        18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~-~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~   96 (364)
T d1um8a_          18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI   96 (364)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             eecChHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc-ccCCCcceeeeCCCCccHHHHHHHHHhhcccce
Confidence            6899999999988777432222111                  111 124678899999999999999999999999999


Q ss_pred             hccccccccC-cchhhH-HHHHHHHHHH----HHhcCCeEEEEcCCCCCCC
Q psy11689        207 LAASAAQLYS-PYVGEA-EQNVTQLFHR----ARLAAPAILFIDEIERTYN  251 (390)
Q Consensus       207 ~~i~~~~~~~-~~~g~~-~~~i~~~f~~----A~~~~p~il~lDEid~~l~  251 (390)
                      +.++++++.. +|+|.. +..++.+...    ....+.+|+++||+|....
T Consensus        97 ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~  147 (364)
T d1um8a_          97 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR  147 (364)
T ss_dssp             EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred             eehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhcc
Confidence            9999887763 455442 2345555543    3455678999999999764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.71  E-value=2.2e-08  Score=96.02  Aligned_cols=102  Identities=22%  Similarity=0.288  Sum_probs=67.0

Q ss_pred             CCCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh----------ccchhccc
Q psy11689        141 AFVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS----------VYRVLAAS  210 (390)
Q Consensus       141 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~----------~~~~~~i~  210 (390)
                      ..++.+.|-+.-...+.+++..             ....+++|+||||+|||+++..+|...          +..++.++
T Consensus        19 g~ld~~~gr~~ei~~~~~~L~r-------------~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld   85 (387)
T d1qvra2          19 GKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ   85 (387)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred             CCCCCCcCcHHHHHHHHHHHhc-------------CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEee
Confidence            3445788888888888777753             356678999999999999999998542          24567788


Q ss_pred             cccccC--cchhhHHHHHHHHHHHHHhcC-CeEEEEcCCCCCCChhhH
Q psy11689        211 AAQLYS--PYVGEAEQNVTQLFHRARLAA-PAILFIDEIERTYNCEYR  255 (390)
Q Consensus       211 ~~~~~~--~~~g~~~~~i~~~f~~A~~~~-p~il~lDEid~~l~~r~~  255 (390)
                      ...+..  +|.|+.++.+..++..+.... +.||||||++.+++....
T Consensus        86 ~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~  133 (387)
T d1qvra2          86 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA  133 (387)
T ss_dssp             C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------
T ss_pred             HhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCC
Confidence            888875  456888999999999988775 678999999999976543

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=3.4e-08  Score=88.15  Aligned_cols=59  Identities=10%  Similarity=0.038  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhc-------CCeEEEEcCCCCCCChhhHHHHHHH---hhcCCCcEEEeccCHHHHHh-cCc
Q psy11689        226 VTQLFHRARLA-------APAILFIDEIERTYNCEYREQTADN---AKKPRIPRTNGGYREQTADT-ANK  284 (390)
Q Consensus       226 i~~~f~~A~~~-------~p~il~lDEid~~l~~r~~~~~~~~---~~~~~~~~i~~~~~~~~i~~-t~~  284 (390)
                      .+..+++|..+       .|.|+++||+.+.+|..........   +...+.+.+..+|.+..+.. |++
T Consensus       132 Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dr  201 (231)
T d1l7vc_         132 QRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHR  201 (231)
T ss_dssp             HHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSB
T ss_pred             HHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCE
Confidence            34455666554       6789999999999998877666443   34568889999999765443 454

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.66  E-value=6.1e-09  Score=94.13  Aligned_cols=44  Identities=27%  Similarity=0.397  Sum_probs=38.3

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCc
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSP  217 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~  217 (390)
                      ....|.++||+||||||||+||+++|.+++.+++.++++++...
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~   71 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ   71 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHH
Confidence            44578899999999999999999999999999999988766543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.65  E-value=1.2e-08  Score=89.98  Aligned_cols=163  Identities=12%  Similarity=0.103  Sum_probs=83.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhhHHH-HHHHHHHHHHhcCCeEEEEcCCCCCCChhh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGEAEQ-NVTQLFHRARLAAPAILFIDEIERTYNCEY  254 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~~~~-~i~~~f~~A~~~~p~il~lDEid~~l~~r~  254 (390)
                      ..++|+||+|||||+|+.|++++..   ..+++++..++.......... .....+..  ....++|+|||++.+.+...
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~dll~iDDi~~i~~~~~  114 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNM--YKSVDLLLLDDVQFLSGKER  114 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHH--HHTCSEEEEECGGGGTTCHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHH--HhhccchhhhhhhhhcCchH
Confidence            3489999999999999999998864   344455554443332222111 11222222  23568999999999987665


Q ss_pred             HHHHHH----HhhcCCCcEEEeccCHHHHHhcCchhHHHhHHHhh-hhc-CCchhHHHhhcccccccCCCCCCCCcchhh
Q psy11689        255 REQTAD----NAKKPRIPRTNGGYREQTADTANKPRIQRTKREYR-EQT-ADTAHKTRISRTNRGYREKTADTANKPRIP  328 (390)
Q Consensus       255 ~~~~~~----~~~~~~~~~i~~~~~~~~i~~t~~~~~~r~~~~~l-~~l-~~~~~r~~I~~~n~~~r~~~~~~vdl~~la  328 (390)
                      .+....    .....+...+..+...-.-.....+++...+...+ ..+ ++.+.+..++......+....++--++-|+
T Consensus       115 ~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~  194 (213)
T d1l8qa2         115 TQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLL  194 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEECCCcHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            443322    22334555555554321111223455532222111 011 233444444432223333333433445566


Q ss_pred             hcCCCCCCCcHHHHHHHHH
Q psy11689        329 RTNRGYREYSAQNANTANK  347 (390)
Q Consensus       329 ~~t~gfs~~gaDL~~l~~~  347 (390)
                      +++.  +  -+||+.+++.
T Consensus       195 ~~~~--~--~R~L~~~l~~  209 (213)
T d1l8qa2         195 ENTK--N--VREIEGKIKL  209 (213)
T ss_dssp             HHCS--S--HHHHHHHHHH
T ss_pred             HhcC--c--HHHHHHHHHH
Confidence            6653  3  5677776654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.64  E-value=1.5e-08  Score=98.83  Aligned_cols=89  Identities=24%  Similarity=0.345  Sum_probs=63.2

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccccccc-Ccchhh-
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERL-AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLY-SPYVGE-  221 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~-~~~~g~-  221 (390)
                      -|.|.++.|+.+.-++...+++...-... .--.+.++||.||+|||||.||+++|+.++.||+.+++..+. .+|+|. 
T Consensus        15 yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~D   94 (443)
T d1g41a_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE   94 (443)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecc
Confidence            58999999999988886544332211111 112367999999999999999999999999999999998877 446665 


Q ss_pred             HHHHHHHHHHHH
Q psy11689        222 AEQNVTQLFHRA  233 (390)
Q Consensus       222 ~~~~i~~~f~~A  233 (390)
                      .+..++++.+.|
T Consensus        95 Vesii~~L~~~a  106 (443)
T d1g41a_          95 VDSIIRDLTDSA  106 (443)
T ss_dssp             THHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            344555555443

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.62  E-value=2e-08  Score=93.86  Aligned_cols=111  Identities=21%  Similarity=0.220  Sum_probs=67.4

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccC-----
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYS-----  216 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~-----  216 (390)
                      .|.|.+++++.+...+......   .. -.-.|...+|++||+|+|||.+|+.+|..+   +.+++.++.+++..     
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~---l~-~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~   99 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAG---LK-DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS   99 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGG---CS-CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred             eEeCHHHHHHHHHHHHHHHhcC---CC-CCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhh
Confidence            5789999999888877542111   01 011334468899999999999999999886   56777777665543     


Q ss_pred             -------cchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        217 -------PYVGEAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       217 -------~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                             +|+|..+.  ..+....+.++-+||+|||+|..- +...+...+.+
T Consensus       100 ~L~g~~~gyvG~~~~--~~l~~~~~~~p~~Vvl~DEieK~~-~~v~~~ll~~l  149 (315)
T d1qvra3         100 RLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDEIEKAH-PDVFNILLQIL  149 (315)
T ss_dssp             GC----------------CHHHHHHHCSSEEEEESSGGGSC-HHHHHHHHHHH
T ss_pred             hhcCCCCCCcCcccC--ChHHHHHHhCCCcEEEEehHhhcC-HHHHHHHHHHh
Confidence                   23332221  123333445566999999999853 33333333333

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.61  E-value=1e-07  Score=80.37  Aligned_cols=96  Identities=19%  Similarity=0.253  Sum_probs=58.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhcccc---------------------c--cc----------cCcch-------
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAASA---------------------A--QL----------YSPYV-------  219 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~~---------------------~--~~----------~~~~~-------  219 (390)
                      .++|.||||||||||+++++..+..+.-.+..                     .  ..          ..++.       
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE   81 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcchhh
Confidence            48999999999999999999776533110000                     0  00          00000       


Q ss_pred             hhHHHHHHHHHHHHHhcCCeEEEEcCCCCCCC--hhhHHHHHHHhhcCCCcEEEeccC
Q psy11689        220 GEAEQNVTQLFHRARLAAPAILFIDEIERTYN--CEYREQTADNAKKPRIPRTNGGYR  275 (390)
Q Consensus       220 g~~~~~i~~~f~~A~~~~p~il~lDEid~~l~--~r~~~~~~~~~~~~~~~~i~~~~~  275 (390)
                      .......+..+..+....|+++++||+.....  ..........+.....+.+...|.
T Consensus        82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~  139 (178)
T d1ye8a1          82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPI  139 (178)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCS
T ss_pred             hhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEcc
Confidence            01223455678888999999999999865542  333444445555556666666664

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.57  E-value=4.1e-08  Score=85.63  Aligned_cols=90  Identities=14%  Similarity=0.192  Sum_probs=60.1

Q ss_pred             hcCCCCCceEEEEcCCCChHHHHHHHHHHhhc----------cchh-------c--------------------------
Q psy11689        172 RLAIPKPKGILLYGPPGCAKTSLVRTLAAHSV----------YRVL-------A--------------------------  208 (390)
Q Consensus       172 ~~~~~~~~~vLl~GppGtGKT~La~aia~~~~----------~~~~-------~--------------------------  208 (390)
                      ++.+.++..+.|.||+|+|||||+++++....          .++.       +                          
T Consensus        21 s~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~  100 (200)
T d1sgwa_          21 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV  100 (200)
T ss_dssp             EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC
Confidence            55678999999999999999999999992210          0000       0                          


Q ss_pred             -------------cccccccCcchh--hHHHHHHHHHHHHHhcCCeEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        209 -------------ASAAQLYSPYVG--EAEQNVTQLFHRARLAAPAILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       209 -------------i~~~~~~~~~~g--~~~~~i~~~f~~A~~~~p~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                                   +...+ .....+  ...+..+..+++|....|.++++||+.+.+|........+.+
T Consensus       101 ~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l  168 (200)
T d1sgwa_         101 KVNKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI  168 (200)
T ss_dssp             CCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHH
Confidence                         00000 000111  123444567888999999999999999999998777665544

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.05  E-value=7.8e-07  Score=74.56  Aligned_cols=34  Identities=24%  Similarity=0.165  Sum_probs=29.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA  211 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~  211 (390)
                      .+.|+|+||||||||||+++||..++.+++....
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~   40 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYG   40 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeeh
Confidence            4679999999999999999999999988765444

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=9.1e-07  Score=72.51  Aligned_cols=31  Identities=29%  Similarity=0.495  Sum_probs=27.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      +.|.|.|||||||||+++.+|.+++++++..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~   33 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS   33 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence            4689999999999999999999999988643

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=3.6e-06  Score=73.24  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .+..+||+||||+|||++|+++|..+
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHHhc
Confidence            46679999999999999999999865

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.97  E-value=1.2e-06  Score=73.19  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=31.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhccccc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAA  212 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~  212 (390)
                      .|+-|+|.|||||||||++++++.+++.+++.++..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d   38 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD   38 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHH
Confidence            356789999999999999999999999988877654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.96  E-value=1.4e-06  Score=72.28  Aligned_cols=31  Identities=39%  Similarity=0.570  Sum_probs=27.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      ..++|.|||||||||+++.+|..++++++..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~   35 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINV   35 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEec
Confidence            3588999999999999999999999888643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.92  E-value=4.2e-06  Score=69.63  Aligned_cols=31  Identities=29%  Similarity=0.383  Sum_probs=28.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      +++|.|+||+||||+++.+|..+|++|+..+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d   32 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD   32 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence            5889999999999999999999999988653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.83  E-value=1.7e-05  Score=70.43  Aligned_cols=50  Identities=8%  Similarity=-0.001  Sum_probs=36.6

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhccchhcccc
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASA  211 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~  211 (390)
                      ++.|-++..+.+.+                 ..++.++|+||+|+|||+|++.++.+.+..+..+++
T Consensus        13 ~f~GR~~el~~l~~-----------------~~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~   62 (283)
T d2fnaa2          13 DFFDREKEIEKLKG-----------------LRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDL   62 (283)
T ss_dssp             GSCCCHHHHHHHHH-----------------TCSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             hCCChHHHHHHHHh-----------------ccCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEe
Confidence            67776666555532                 134679999999999999999999887765544433

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.80  E-value=4e-06  Score=70.26  Aligned_cols=32  Identities=28%  Similarity=0.502  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      ..++|.|+|||||||+++.+|..+|++++..+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D   34 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD   34 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEehh
Confidence            45889999999999999999999999987543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=5.6e-06  Score=68.66  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=27.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .+.-++|+|||||||||+++.++..++++++.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~   36 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD   36 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeec
Confidence            46678899999999999999999999876654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.77  E-value=5.6e-06  Score=68.81  Aligned_cols=31  Identities=19%  Similarity=0.153  Sum_probs=26.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      ..|..|+|+|+|||||||+++++|..++..+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~   34 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQG   34 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            3567799999999999999999999886543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.77  E-value=4.8e-06  Score=77.59  Aligned_cols=48  Identities=27%  Similarity=0.358  Sum_probs=37.4

Q ss_pred             CCCCccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        142 FVPELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       142 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .|.+|.|.+.+|..+.-....+             .+.++||+||||||||+||++++.-+
T Consensus         5 ~f~~I~Gq~~~kral~laa~~~-------------~~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_           5 PFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             ChhhccCcHHHHHHHHHHHhcc-------------CCCeEEEECCCCccHHHHHHHHHHhC
Confidence            3559999999998776544321             23479999999999999999999643

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.76  E-value=5.3e-06  Score=70.60  Aligned_cols=32  Identities=13%  Similarity=0.313  Sum_probs=28.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .|..++|.|||||||||+++.||...+++++.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is   33 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS   33 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence            46679999999999999999999999887654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.76  E-value=6.1e-06  Score=68.42  Aligned_cols=31  Identities=29%  Similarity=0.326  Sum_probs=26.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .+-|+|+||||+||||++++++.+++.+++.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~   33 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLA   33 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence            4568999999999999999999998866543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.74  E-value=6.9e-06  Score=68.18  Aligned_cols=28  Identities=43%  Similarity=0.606  Sum_probs=25.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +++..|+|.|||||||||+++.+|..++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            4667799999999999999999999875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.72  E-value=7.9e-06  Score=69.51  Aligned_cols=33  Identities=33%  Similarity=0.412  Sum_probs=28.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      ++..++|.|||||||||+++.||...|+.++..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~   34 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT   34 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            566788999999999999999999998776543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=6.1e-06  Score=68.70  Aligned_cols=30  Identities=30%  Similarity=0.418  Sum_probs=26.6

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccchhccc
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAAS  210 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~~~~~~~~i~  210 (390)
                      +.|.|+|||||||+++.+|..++++|+..+
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~D   33 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTD   33 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeec
Confidence            667799999999999999999999987543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.71  E-value=8.3e-06  Score=69.54  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=28.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ..|..|+|.|||||||||+++.||...|+..+.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~   36 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLS   36 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence            467789999999999999999999998876543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.69  E-value=7.4e-06  Score=67.59  Aligned_cols=28  Identities=29%  Similarity=0.409  Sum_probs=24.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      +-++|+|||||||||+|+.+|.+.+..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~   30 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSA   30 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence            3589999999999999999999887543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.68  E-value=2e-05  Score=67.95  Aligned_cols=84  Identities=11%  Similarity=0.087  Sum_probs=53.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhcc------chhccccccccCcchhhHHHHHHHHHHHHHhc----CCeEEEEcC
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVY------RVLAASAAQLYSPYVGEAEQNVTQLFHRARLA----APAILFIDE  245 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~------~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~----~p~il~lDE  245 (390)
                      ..+.++|++||||+|||++|..++.....      .++.+....   ..  -+-..++.+...+...    +..|++|||
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~---~~--I~Id~IR~i~~~~~~~~~~~~~KviIId~   87 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--IGIDDIRTIKDFLNYSPELYTRKYVIVHD   87 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--BCHHHHHHHHHHHTSCCSSSSSEEEEETT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCc---CC--CCHHHHHHHHHHHhhCcccCCCEEEEEeC
Confidence            35778999999999999999999976531      233333211   00  1234566666665433    346999999


Q ss_pred             CCCCCChhhHHHHHHHhhcC
Q psy11689        246 IERTYNCEYREQTADNAKKP  265 (390)
Q Consensus       246 id~~l~~r~~~~~~~~~~~~  265 (390)
                      +|.+ .....+.....+..+
T Consensus        88 ad~l-~~~aqNaLLK~LEEP  106 (198)
T d2gnoa2          88 CERM-TQQAANAFLKALEEP  106 (198)
T ss_dssp             GGGB-CHHHHHHTHHHHHSC
T ss_pred             cccc-chhhhhHHHHHHhCC
Confidence            9997 344444555555543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=6.6e-06  Score=69.67  Aligned_cols=31  Identities=23%  Similarity=0.255  Sum_probs=26.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .|..|+|+|+|||||||+|+.+|..++.+++
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~   48 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGI   48 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            4667889999999999999999999876554

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=2.6e-05  Score=65.51  Aligned_cols=64  Identities=20%  Similarity=0.268  Sum_probs=41.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIER  248 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~  248 (390)
                      +.|.-++++|+|||||||+++.++...++.++..  .++..      ...+......+....- -+++|....
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~--D~~~~------~~~~~~~~~~~l~~g~-~vIiD~t~~   75 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR--DTLGS------WQRCVSSCQAALRQGK-RVVIDNTNP   75 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEH--HHHCS------HHHHHHHHHHHHHTTC-CEEEESCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEch--HHHHH------HHHHHHHHHHHHHCCC-CceeeCcCC
Confidence            5678899999999999999999988776554332  22211      1233444445544443 466786554

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.1e-05  Score=67.22  Aligned_cols=24  Identities=33%  Similarity=0.670  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ++|+|+||||||||||+++++..+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            579999999999999999999765

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.61  E-value=1.2e-05  Score=67.58  Aligned_cols=29  Identities=21%  Similarity=0.352  Sum_probs=25.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .++|.|||||||||+++.||...|++++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~   30 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceec
Confidence            48999999999999999999999877654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.60  E-value=4.9e-05  Score=72.54  Aligned_cols=90  Identities=13%  Similarity=0.163  Sum_probs=62.5

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhhcc---chhcccc-ccccCc---
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAHSVY---RVLAASA-AQLYSP---  217 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~~~~---~~~~i~~-~~~~~~---  217 (390)
                      ++|-.+...+.+++.+..              +..-+|+.||.|+||||.+.++..+..-   +++.+.- .+..-.   
T Consensus       139 ~LG~~~~~~~~l~~l~~~--------------~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~  204 (401)
T d1p9ra_         139 SLGMTAHNHDNFRRLIKR--------------PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIG  204 (401)
T ss_dssp             GSCCCHHHHHHHHHHHTS--------------SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSE
T ss_pred             hhcccHHHHHHHHHHHhh--------------hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCC
Confidence            788777777777776643              5677999999999999999999877642   2332221 111110   


Q ss_pred             ---chhhHHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy11689        218 ---YVGEAEQNVTQLFHRARLAAPAILFIDEIER  248 (390)
Q Consensus       218 ---~~g~~~~~i~~~f~~A~~~~p~il~lDEid~  248 (390)
                         ..+........++..+.++.|+||++.|+..
T Consensus       205 q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd  238 (401)
T d1p9ra_         205 QTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD  238 (401)
T ss_dssp             EEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred             eeeecCCcCCCHHHHHHHHHhhcCCEEEecCcCC
Confidence               1122233467788889999999999999974

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=1.8e-05  Score=66.67  Aligned_cols=30  Identities=30%  Similarity=0.475  Sum_probs=26.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      .++|.|||||||||+++.||...|+..+..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~   31 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST   31 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence            588999999999999999999998776543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.2e-05  Score=66.77  Aligned_cols=30  Identities=23%  Similarity=0.428  Sum_probs=26.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      |..|+|.|||||||||+|+.||...|+..+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i   30 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL   30 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence            456899999999999999999999987664

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.49  E-value=2.4e-05  Score=66.74  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=28.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .+..++|.|||||||||+++.||...|++.+.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is   38 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLS   38 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEe
Confidence            56779999999999999999999998876643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=2.8e-05  Score=66.25  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ....++|.|||||||||+|+.||...|+.++.
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~g~~~is   38 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS   38 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            44568999999999999999999999876654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.47  E-value=2.8e-05  Score=66.32  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=27.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ....++|.|||||||||+++.||...|+.++.
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g~~~is   36 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLS   36 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBCCEEEE
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence            34568899999999999999999998877653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.46  E-value=2.5e-05  Score=65.77  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=25.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .|+|.|||||||||+++.||..++++++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is   30 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHIS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceee
Confidence            48899999999999999999999877654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=2.9e-05  Score=65.42  Aligned_cols=30  Identities=30%  Similarity=0.410  Sum_probs=25.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      ..++|.|||||||||+++.||...|++.+.
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~~i~   32 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAAHLA   32 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceEe
Confidence            358899999999999999999998876554

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=3e-05  Score=66.85  Aligned_cols=28  Identities=29%  Similarity=0.522  Sum_probs=25.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      -|++.|||||||||+++.||.++|++++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~i   32 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLL   32 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            6889999999999999999999987764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.40  E-value=3.4e-05  Score=71.50  Aligned_cols=72  Identities=11%  Similarity=0.258  Sum_probs=48.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhcc--chhcc-cccccc-------CcchhhHHHHHHHHHHHHHhcCCeEEEEcCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVY--RVLAA-SAAQLY-------SPYVGEAEQNVTQLFHRARLAAPAILFIDEI  246 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~--~~~~i-~~~~~~-------~~~~g~~~~~i~~~f~~A~~~~p~il~lDEi  246 (390)
                      .+.++++.||+|+||||++++++.....  .++.+ +..++.       ....+..+-....++..+.++.|+.|++.|+
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEi  244 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL  244 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCC
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCcc
Confidence            4567999999999999999999977542  22222 111211       1111122224567888899999999999999


Q ss_pred             CC
Q psy11689        247 ER  248 (390)
Q Consensus       247 d~  248 (390)
                      -.
T Consensus       245 R~  246 (323)
T d1g6oa_         245 RS  246 (323)
T ss_dssp             CS
T ss_pred             Cc
Confidence            64

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=3.1e-05  Score=64.97  Aligned_cols=29  Identities=17%  Similarity=0.251  Sum_probs=25.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      .++|.|||||||||+++.||...++.++.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~   30 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS   30 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence            47899999999999999999998876553

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.38  E-value=9.3e-05  Score=64.76  Aligned_cols=30  Identities=30%  Similarity=0.278  Sum_probs=26.6

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      -|++++..++|+||||+|||+++..+|...
T Consensus        21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          21 GGFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999998653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.37  E-value=4e-05  Score=62.07  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .-|+|+|||||||||+|+.++.+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            358899999999999999987654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00021  Score=61.88  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=44.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccC--------------------cchhhHHHHHHHHHHH
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYS--------------------PYVGEAEQNVTQLFHR  232 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~--------------------~~~g~~~~~i~~~f~~  232 (390)
                      ..|.-++|+||+|+||||.+..+|..+.   ..+..+.+.....                    ....+....+++....
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~   86 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA   86 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence            4567789999999999988888885432   2222222211110                    0111223344455555


Q ss_pred             HHhcCCeEEEEcCCCCCC
Q psy11689        233 ARLAAPAILFIDEIERTY  250 (390)
Q Consensus       233 A~~~~p~il~lDEid~~l  250 (390)
                      ++...-++|++|=+.+.-
T Consensus        87 a~~~~~d~ilIDTaGr~~  104 (211)
T d2qy9a2          87 AKARNIDVLIADTAGRLQ  104 (211)
T ss_dssp             HHHTTCSEEEECCCCCGG
T ss_pred             HHHcCCCEEEeccCCCcc
Confidence            666677899999877643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.34  E-value=4e-05  Score=66.34  Aligned_cols=28  Identities=21%  Similarity=0.411  Sum_probs=24.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .|.+.|||||||||+|+.||.++|++++
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~i   32 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTYL   32 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            3678899999999999999999998754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.33  E-value=0.00026  Score=62.75  Aligned_cols=79  Identities=23%  Similarity=0.218  Sum_probs=46.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccCcchhhHHHHHHHHHH---------------HHHhcCC
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYSPYVGEAEQNVTQLFH---------------RARLAAP  238 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~~~~g~~~~~i~~~f~---------------~A~~~~p  238 (390)
                      ....|+|+|++|||||++|+++...+.   .+++.+++..+...      .....+|.               .....+.
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~l~~a~g   95 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRD------IFEAELFGYEKGAFTGAVSSKEGFFELADG   95 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHH------HHHHHHHCBCTTSSTTCCSCBCCHHHHTTT
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhc------ccHHHhcCcccCCcCCcccccCCHHHccCC
Confidence            455699999999999999999986653   34555555433111      11112221               0122345


Q ss_pred             eEEEEcCCCCCCChhhHHHHHHHh
Q psy11689        239 AILFIDEIERTYNCEYREQTADNA  262 (390)
Q Consensus       239 ~il~lDEid~~l~~r~~~~~~~~~  262 (390)
                      ..|||||+|.+ +........+.+
T Consensus        96 GtL~l~~i~~L-~~~~Q~~L~~~l  118 (247)
T d1ny5a2          96 GTLFLDEIGEL-SLEAQAKLLRVI  118 (247)
T ss_dssp             SEEEEESGGGC-CHHHHHHHHHHH
T ss_pred             CEEEEeChHhC-CHHHHHHHHHHH
Confidence            68999999986 433333344444

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.33  E-value=0.00017  Score=62.17  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=24.1

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHH
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLA  199 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia  199 (390)
                      -|++++..++|+|+||+|||+|+..+|
T Consensus        21 GGi~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          21 GGLPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            467899999999999999999997765

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00024  Score=63.70  Aligned_cols=79  Identities=19%  Similarity=0.203  Sum_probs=50.9

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhhc---cchhccccccccC----------------cchhhHHHHHHHHHHHH
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHSV---YRVLAASAAQLYS----------------PYVGEAEQNVTQLFHRA  233 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~~---~~~~~i~~~~~~~----------------~~~g~~~~~i~~~f~~A  233 (390)
                      -|++.+.-+.|+||||+|||+|+-.++....   ..+++++...-+.                ......++.+..+-...
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~  128 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA  128 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHH
Confidence            3677889999999999999999988875542   3344444432211                11122344333333334


Q ss_pred             HhcCCeEEEEcCCCCCCC
Q psy11689        234 RLAAPAILFIDEIERTYN  251 (390)
Q Consensus       234 ~~~~p~il~lDEid~~l~  251 (390)
                      ...+++++++|-+.++..
T Consensus       129 ~~~~~~liViDSi~al~~  146 (263)
T d1u94a1         129 RSGAVDVIVVDSVAALTP  146 (263)
T ss_dssp             HHTCCSEEEEECGGGCCC
T ss_pred             hcCCCCEEEEECcccccc
Confidence            457789999999998874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.21  E-value=0.00032  Score=60.51  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .+..++|+||+|+||||.+.-+|..+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46778999999999998888788554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.18  E-value=0.00033  Score=60.58  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=18.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ..|..++|+||+|+||||.+.-+|..+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            457779999999999998888887543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.13  E-value=0.00011  Score=60.87  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=22.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      +-|+|.|||||||||+++.++..++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999987654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=0.00011  Score=62.52  Aligned_cols=27  Identities=26%  Similarity=0.402  Sum_probs=23.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      |.-|+++|.||+||||+|++||...+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999987754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.10  E-value=0.00053  Score=59.30  Aligned_cols=27  Identities=30%  Similarity=0.298  Sum_probs=22.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .+|..++|+||+|+||||.+..+|..+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            457779999999999998888888553

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00013  Score=59.74  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=21.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      -+.|+|+||||||||++.++.++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999997753

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.99  E-value=0.00065  Score=58.47  Aligned_cols=26  Identities=27%  Similarity=0.220  Sum_probs=21.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .+.-++|.||+|+||||.+..+|..+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34557889999999999888888554

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.96  E-value=0.0016  Score=58.38  Aligned_cols=47  Identities=11%  Similarity=-0.026  Sum_probs=32.9

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ++.|-+...+.+.+.+..          ..-.....|.|+|..|.||||||+.+.++
T Consensus        21 ~~~gR~~~~~~i~~~L~~----------~~~~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLDE----------MCDLDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             CSCCCHHHHHHHHHHHHH----------HTTSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceeCcHHHHHHHHHHHHh----------ccCCCceEEEEECCCCCCHHHHHHHHHHh
Confidence            455666666666665532          11123456899999999999999999865

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.95  E-value=0.0003  Score=58.92  Aligned_cols=30  Identities=17%  Similarity=0.035  Sum_probs=24.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .+--|.|.||+||||||||+.++..++...
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~~~   50 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLREQG   50 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            344577999999999999999998776443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.94  E-value=0.00094  Score=59.77  Aligned_cols=80  Identities=21%  Similarity=0.205  Sum_probs=50.9

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCc----------------chhhHHHHHHHHHHHH
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSP----------------YVGEAEQNVTQLFHRA  233 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~----------------~~g~~~~~i~~~f~~A  233 (390)
                      -|++.++-+.|+||||+|||+|+-.++...   +..+++++...-+..                .....++.+..+-...
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~  134 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI  134 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence            377899999999999999999987776443   344455554332211                1122333332222223


Q ss_pred             HhcCCeEEEEcCCCCCCCh
Q psy11689        234 RLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       234 ~~~~p~il~lDEid~~l~~  252 (390)
                      ....+++|++|-+.++.+.
T Consensus       135 ~~~~~~liIiDSi~al~~~  153 (269)
T d1mo6a1         135 RSGALDIVVIDSVAALVPR  153 (269)
T ss_dssp             HTTCEEEEEEECSTTCCCH
T ss_pred             hcCCCCEEEEecccccccH
Confidence            3456889999999998864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.89  E-value=0.00024  Score=61.28  Aligned_cols=74  Identities=14%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh----ccchhccccccccCcc------h-hhHHHHHHHHHHHH--HhcCCeEEE
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS----VYRVLAASAAQLYSPY------V-GEAEQNVTQLFHRA--RLAAPAILF  242 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~----~~~~~~i~~~~~~~~~------~-g~~~~~i~~~f~~A--~~~~p~il~  242 (390)
                      ..+..|.|+|.||+|||||+++++..+    +.+++.+++..+....      . .........+...|  ...+..+++
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~~~~r~~~~a~~~~~~g~~vi  101 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAI  101 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHhccCCcee
Confidence            567889999999999999999999765    3466666665544322      1 12233444444433  233445566


Q ss_pred             EcCCCCC
Q psy11689        243 IDEIERT  249 (390)
Q Consensus       243 lDEid~~  249 (390)
                      ++=+.-.
T Consensus       102 v~~i~~~  108 (208)
T d1m7ga_         102 TSFISPY  108 (208)
T ss_dssp             EECCCCC
T ss_pred             eeccccc
Confidence            6555443

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00025  Score=59.80  Aligned_cols=30  Identities=23%  Similarity=0.197  Sum_probs=26.8

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      -|++++.-++|+||||+|||+|+..+|...
T Consensus        18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          18 GGIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999998654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.85  E-value=0.00024  Score=59.01  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=22.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYR  205 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~  205 (390)
                      -++|.|+||+||||+++.++..++..
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            47889999999999999999887643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00024  Score=61.54  Aligned_cols=29  Identities=24%  Similarity=0.209  Sum_probs=26.0

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -|++++..++|+||||||||+|+..+|..
T Consensus        29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          29 GGVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            36889999999999999999999998754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0016  Score=60.76  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=17.3

Q ss_pred             CceEEEEcCCCChHHHHHHHH
Q psy11689        178 PKGILLYGPPGCAKTSLVRTL  198 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~ai  198 (390)
                      .+.++|.||||||||+++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            356999999999999887554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.73  E-value=0.0011  Score=59.20  Aligned_cols=79  Identities=20%  Similarity=0.238  Sum_probs=51.3

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh---ccchhccccccccCc----------------chhhHHHHHHHHHHHH
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASAAQLYSP----------------YVGEAEQNVTQLFHRA  233 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~~~~~~~----------------~~g~~~~~i~~~f~~A  233 (390)
                      -|++.++-+.++||+|||||+|+..++...   +..+++++...-+..                .....++.+..+-...
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~  131 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV  131 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHH
Confidence            367788999999999999999999988554   344555554432211                1122334333222223


Q ss_pred             HhcCCeEEEEcCCCCCCC
Q psy11689        234 RLAAPAILFIDEIERTYN  251 (390)
Q Consensus       234 ~~~~p~il~lDEid~~l~  251 (390)
                      ....++++++|-+.++.+
T Consensus       132 ~~~~~~liIiDSi~al~~  149 (268)
T d1xp8a1         132 RSGAIDVVVVDSVAALTP  149 (268)
T ss_dssp             TTTCCSEEEEECTTTCCC
T ss_pred             hcCCCcEEEEeccccccc
Confidence            345688999999999885

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.68  E-value=0.00013  Score=67.11  Aligned_cols=49  Identities=8%  Similarity=0.033  Sum_probs=38.1

Q ss_pred             cchhhhhheeeeeccccC---CCcchhhHHHHhhcccccCCcccCCCccc---eeeCCCCCccCcccccc
Q psy11689          3 VDLVRVCNTVLMYFAKHR---GCTADSLLRHVRSSLSHYRPSCLKAGGLG---VIDLPTAPQGRETELPF   66 (390)
Q Consensus         3 ~~~~~~~n~~~~~~~~n~---~~~~d~al~r~~~~~~~l~~~l~~~gr~~---~i~ip~~~~~r~~~l~~   66 (390)
                      .|...-.+||+|+|+|||   .+++|++++|              ||||+   .+..|+ .++|.+||..
T Consensus       218 ~dg~~~~~~v~viaatN~~~~~~~i~~~~~r--------------~~Rf~~~v~v~~pd-~~~r~~il~~  272 (321)
T d1w44a_         218 IGAMAASRGCVVIASLNPTSNDDKIVELVKE--------------ASRSNSTSLVISTD-VDGEWQVLTR  272 (321)
T ss_dssp             HHHHHHHHTCEEEEECCCCCCCHHHHHHHHH--------------HHHHSCSEEEEECS-STTEEEEEEE
T ss_pred             ccccccCCCeEEEEeCCCcccccchhhhhhc--------------cCcccceeecCCCC-hHHHHHHHHH
Confidence            356667889999999996   3556777777              99999   555565 8899998875

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00059  Score=59.40  Aligned_cols=29  Identities=24%  Similarity=0.123  Sum_probs=26.4

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -|++++..++|+||||||||+++..+|..
T Consensus        32 GGip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          32 GGIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999999999864

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0016  Score=56.95  Aligned_cols=79  Identities=19%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHH-----Hhhccchh--------------ccccccccC---cchhhHHHHHHHHHHHHHh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLA-----AHSVYRVL--------------AASAAQLYS---PYVGEAEQNVTQLFHRARL  235 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia-----~~~~~~~~--------------~i~~~~~~~---~~~g~~~~~i~~~f~~A~~  235 (390)
                      .+.++|+||+.+|||+++|+++     .+.|..+.              .+...+-..   ......-+.+..++..+. 
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~-  119 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNAT-  119 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCC-
T ss_pred             ceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhheeEEccCcccccchhHHHHHHHHHHHHHHhcc-
Confidence            4679999999999999999998     34442221              111111110   011122244566666543 


Q ss_pred             cCCeEEEEcCCCCCCChhhHHHH
Q psy11689        236 AAPAILFIDEIERTYNCEYREQT  258 (390)
Q Consensus       236 ~~p~il~lDEid~~l~~r~~~~~  258 (390)
                       +.+++++||+.+.-++......
T Consensus       120 -~~sLvliDE~~~gT~~~eg~~l  141 (234)
T d1wb9a2         120 -EYSLVLMDEIGRGTSTYDGLSL  141 (234)
T ss_dssp             -TTEEEEEESCCCCSSSSHHHHH
T ss_pred             -cccEEeecccccCCChhhhhHH
Confidence             4689999999998877655443

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.58  E-value=0.00047  Score=60.12  Aligned_cols=30  Identities=30%  Similarity=0.278  Sum_probs=26.5

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      -|++++..++|+||||||||+++-.+|...
T Consensus        31 GGlp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          31 GGIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999999888553

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00066  Score=57.10  Aligned_cols=24  Identities=33%  Similarity=0.582  Sum_probs=21.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .|+|+||||+|||+|++.++.+..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            489999999999999999988754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.0007  Score=57.23  Aligned_cols=24  Identities=29%  Similarity=0.599  Sum_probs=21.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .|.|+||||+|||+|++.++.+..
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            388999999999999999998765

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.52  E-value=0.00069  Score=56.59  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      |.-++|.||||+|||||++.+..+.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            5678999999999999999998775

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00091  Score=57.16  Aligned_cols=28  Identities=18%  Similarity=0.095  Sum_probs=23.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYR  205 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~  205 (390)
                      |--|.|.||+||||||+++.++..++..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            3457899999999999999999887654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.48  E-value=0.0012  Score=54.14  Aligned_cols=32  Identities=25%  Similarity=0.230  Sum_probs=27.8

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYR  205 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~  205 (390)
                      ...++..|+|.|+=|+|||++++.+++.+|..
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            33567789999999999999999999998864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.48  E-value=0.00082  Score=55.10  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=20.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      -+.++|++|||||||+..++.++.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999987654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0025  Score=51.46  Aligned_cols=23  Identities=30%  Similarity=0.563  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.|++.|+||+|||+|++++...
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999743

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.38  E-value=0.0082  Score=51.90  Aligned_cols=96  Identities=17%  Similarity=0.142  Sum_probs=55.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHH-----Hhhccch---------h-----ccccccccCc---chhhHHHHHHHHHHHHHhc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLA-----AHSVYRV---------L-----AASAAQLYSP---YVGEAEQNVTQLFHRARLA  236 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia-----~~~~~~~---------~-----~i~~~~~~~~---~~g~~~~~i~~~f~~A~~~  236 (390)
                      ..++|+||+.+|||++.|+++     .+.|..+         +     .+...+-...   .....-+.++.++..+  .
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~~~--~  113 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEA--T  113 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHC--C
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEEEECCCccccCCccHHHHhHHHHHHHhccC--C
Confidence            468999999999999999997     3334222         1     1111111100   1111224455666643  4


Q ss_pred             CCeEEEEcCCCCCCChhhHHHH----HHHhhcCCCcEEEeccCH
Q psy11689        237 APAILFIDEIERTYNCEYREQT----ADNAKKPRIPRTNGGYRE  276 (390)
Q Consensus       237 ~p~il~lDEid~~l~~r~~~~~----~~~~~~~~~~~i~~~~~~  276 (390)
                      ..+++++||+.+.-++......    .+.+.......+..+|..
T Consensus       114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~  157 (224)
T d1ewqa2         114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF  157 (224)
T ss_dssp             TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred             CCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence            5689999999998887654433    333344455566667653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.17  E-value=0.0012  Score=55.47  Aligned_cols=30  Identities=30%  Similarity=0.329  Sum_probs=24.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .|--+.|+|++||||||+|+.+ .+.|++++
T Consensus         2 ~p~IIgitG~~gSGKstva~~l-~~~g~~~~   31 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL-RSWGYPVL   31 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH-HHTTCCEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHH-HHCCCeEE
Confidence            4566889999999999999998 45676654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.15  E-value=0.0033  Score=49.47  Aligned_cols=28  Identities=25%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhccc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSVYR  205 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~~~  205 (390)
                      ....+|.+|.|+|||+++-.++.+.+..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            4568999999999999887666555433

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.14  E-value=0.0045  Score=54.79  Aligned_cols=28  Identities=21%  Similarity=0.278  Sum_probs=24.8

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      |+.++.-++|.|+||+|||+++..+|..
T Consensus        31 G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          31 GARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             SBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            6788999999999999999998888743

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.07  E-value=0.0014  Score=56.46  Aligned_cols=29  Identities=14%  Similarity=0.147  Sum_probs=26.1

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +++++.-++|+|+||+|||+++-.+|...
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999999998654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.06  E-value=0.0016  Score=55.47  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=28.9

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      +++....++|+|||+||||+++.++++-++..++
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vi   82 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI   82 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhCCEEE
Confidence            4577889999999999999999999988765443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.96  E-value=0.0035  Score=51.72  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..|+|.|.||+|||+|++++.+.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999999854

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.93  E-value=0.002  Score=53.79  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=25.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .+.++||.|+||+|||+++-.+... |..++
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv   42 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GHRLI   42 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TCEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence            5789999999999999999888765 55444

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.77  E-value=0.0012  Score=51.69  Aligned_cols=20  Identities=30%  Similarity=0.222  Sum_probs=17.3

Q ss_pred             CCCceEEEEcCCCChHHHHH
Q psy11689        176 PKPKGILLYGPPGCAKTSLV  195 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La  195 (390)
                      ..+..++|++|+|+|||..+
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            46888999999999999555

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.003  Score=52.69  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=21.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      +.+.|.||+|+|||+|++.+..+.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998664

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.76  E-value=0.0027  Score=50.72  Aligned_cols=22  Identities=27%  Similarity=0.378  Sum_probs=19.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|+||+|||+|++.+...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.003  Score=53.99  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      |.-++|+||+|+|||+|.+.+....
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            5668999999999999999998764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.66  E-value=0.002  Score=53.97  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=25.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      ..|..|.|.|+.|+||||+++.|+..++.
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46778999999999999999999988753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.59  E-value=0.0032  Score=52.16  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .+.+|||.|+||+|||+++-.+... |..+
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~l   42 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRL   42 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeE
Confidence            5789999999999999999887766 4444

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.59  E-value=0.0031  Score=54.36  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~  202 (390)
                      -+++.||+|+|||||++.+....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            37899999999999999998654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.51  E-value=0.001  Score=58.65  Aligned_cols=63  Identities=13%  Similarity=0.092  Sum_probs=45.9

Q ss_pred             hhheeeeeccccCCCcchhhHHHHhhcccccCCcccCCCccc-eeeCCCCCccCccccccc---cCCcccchHHHHHHhh
Q psy11689          8 VCNTVLMYFAKHRGCTADSLLRHVRSSLSHYRPSCLKAGGLG-VIDLPTAPQGRETELPFT---KLNEEVELSENVQREE   83 (390)
Q Consensus         8 ~~n~~~~~~~~n~~~~~d~al~r~~~~~~~l~~~l~~~gr~~-~i~ip~~~~~r~~~l~~~---~~~~~v~l~~~la~~t   83 (390)
                      ...+|+++|+||+++.+|++.+               .+||+ .|++|+ ..+|.+++.+.   ..-.+.++ ..+++.+
T Consensus       140 ~~~~v~vi~tTn~~~~ld~~~~---------------~~rF~~~i~~P~-~~~r~~il~~l~~~~~~~~~~~-~~i~~~~  202 (246)
T d1d2na_         140 QGRKLLIIGTTSRKDVLQEMEM---------------LNAFSTTIHVPN-IATGEQLLEALELLGNFKDKER-TTIAQQV  202 (246)
T ss_dssp             TTCEEEEEEEESCHHHHHHTTC---------------TTTSSEEEECCC-EEEHHHHHHHHHHHTCSCHHHH-HHHHHHH
T ss_pred             cccceeeeeccCChhhccchhh---------------cCccceEEecCC-chhHHHHHHHHHhccCCChHHH-HHHHHHc
Confidence            3457999999999988876543               57999 899999 66777777661   12234556 6788888


Q ss_pred             cCCc
Q psy11689         84 EGIA   87 (390)
Q Consensus        84 ~G~~   87 (390)
                      .|..
T Consensus       203 ~g~~  206 (246)
T d1d2na_         203 KGKK  206 (246)
T ss_dssp             TTSE
T ss_pred             CCCc
Confidence            8855

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0062  Score=54.69  Aligned_cols=28  Identities=25%  Similarity=0.273  Sum_probs=22.6

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      -..|--|.|.|++|||||||+..|...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHH
Confidence            3456677899999999999999886554

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.42  E-value=0.0031  Score=53.65  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=23.2

Q ss_pred             EEEEcCCCChHHHHHHHHHHhhccchhcc
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAHSVYRVLAA  209 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~~~~~~~~i  209 (390)
                      |.|+|++||||||+++.+. +.|++++..
T Consensus         5 IgITG~igSGKStv~~~l~-~~G~~vida   32 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT-DLGVPLVDA   32 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH-TTTCCEEEH
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCCeEEEc
Confidence            6799999999999999886 578776643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.40  E-value=0.0039  Score=51.99  Aligned_cols=30  Identities=23%  Similarity=0.239  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      .+.++||.||+|+|||+++-.+... |+.++
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lv   43 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFV   43 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCcee
Confidence            5789999999999999999888754 54443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.0044  Score=49.34  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=20.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .++|.|+||+|||+|+..+...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0053  Score=52.44  Aligned_cols=26  Identities=23%  Similarity=0.221  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .|..|.|.|+.|+||||+++.++..+
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45678888999999999999998765

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.0053  Score=52.10  Aligned_cols=26  Identities=23%  Similarity=0.243  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      |..|.+.|+.||||||+++.++..+.
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56789999999999999999997653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0038  Score=53.24  Aligned_cols=28  Identities=21%  Similarity=0.275  Sum_probs=23.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVLA  208 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~~  208 (390)
                      -|.|+|++||||||+++.+. +.|++++.
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G~~vid   32 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLGINVID   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTTCEEEE
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCCCcEEE
Confidence            46799999999999999886 66776653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.23  E-value=0.0051  Score=49.31  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.++|.|.||+|||+|++++...
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.0053  Score=51.82  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      +.|+|.|+||+|||+|++.+...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999854

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.20  E-value=0.0051  Score=51.66  Aligned_cols=23  Identities=39%  Similarity=0.621  Sum_probs=20.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .|+|.|+||+|||+|++++.++.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999998653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.19  E-value=0.0045  Score=50.56  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ....|+|.|+||+|||+|+.++...
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4456999999999999999999643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.12  E-value=0.031  Score=45.26  Aligned_cols=21  Identities=29%  Similarity=0.577  Sum_probs=19.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHH
Q psy11689        180 GILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~  200 (390)
                      .|+|.|+||+|||+|++++.+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999974

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.016  Score=52.85  Aligned_cols=25  Identities=16%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ....|.|+||||+|||||+.+++..
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHH
Confidence            4566999999999999999999854

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.05  E-value=0.0066  Score=53.99  Aligned_cols=60  Identities=18%  Similarity=0.266  Sum_probs=40.9

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhccchhccccccccCcchhhHHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARLAAPAILFIDEIERT  249 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~~~p~il~lDEid~~  249 (390)
                      .+....+.|+||++||||+++.+++..+|... .+....              .-|..+....-.++++||++.-
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~~-~~~~~~--------------~~f~l~~l~~k~~~~~~e~~~~  160 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTVPFYG-CVNWTN--------------ENFPFNDCVDKMVIWWEEGKMT  160 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHSSCEE-ECCTTC--------------SSCTTGGGSSCSEEEECSCCEE
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHhcchh-hccccC--------------CCccccccCCCEEEEEeCCCcc
Confidence            35677899999999999999999998875321 111100              0133344555679999998753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.0099  Score=53.91  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=24.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +.|--|.|.|++|+||||+++.++..+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            4566789999999999999999997763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.95  E-value=0.0052  Score=50.55  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|+||+|||||++++.++
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999753

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.93  E-value=0.031  Score=47.12  Aligned_cols=29  Identities=21%  Similarity=0.127  Sum_probs=22.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      ...++.+|+|+|||.++-.++.+.+.+.+
T Consensus        86 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~L  114 (206)
T d2fz4a1          86 KRGCIVLPTGSGKTHVAMAAINELSTPTL  114 (206)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHSCSCEE
T ss_pred             CCcEEEeCCCCCceehHHhHHHHhcCcee
Confidence            34678899999999998888877664443

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.89  E-value=0.0066  Score=49.10  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|++.+...
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999999753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.006  Score=53.70  Aligned_cols=26  Identities=31%  Similarity=0.250  Sum_probs=22.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .++.-.+|+|+||+|||+|+-.+|..
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            35788999999999999999888754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.72  E-value=0.0077  Score=49.03  Aligned_cols=25  Identities=12%  Similarity=0.357  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      +.-.|+|.|.||+|||+|+..+...
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC
Confidence            4456999999999999999999754

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.019  Score=48.61  Aligned_cols=46  Identities=9%  Similarity=0.044  Sum_probs=28.8

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcC---CCCCceEEEEcCCCChHHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLA---IPKPKGILLYGPPGCAKTS  193 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~vLl~GppGtGKT~  193 (390)
                      +++-.++..+.+.+.   .+..+...+...   +-.++.+++..|+|||||.
T Consensus         7 ~l~L~~~l~~~l~~~---g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTl   55 (206)
T d1veca_           7 DYCLKRELLMGIFEM---GWEKPSPIQEESIPIALSGRDILARAKNGTGKSG   55 (206)
T ss_dssp             GSCCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHH
T ss_pred             ccCcCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEeeccCcccccc
Confidence            676666666666553   233333333211   2247889999999999994

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.70  E-value=0.0072  Score=52.24  Aligned_cols=28  Identities=14%  Similarity=0.051  Sum_probs=24.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhccchh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVYRVL  207 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~~~~  207 (390)
                      -|.|+|+.||||||+|+.++...|++++
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~g~~~i   30 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNYSAVKY   30 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCeEE
Confidence            4789999999999999999988776654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.70  E-value=0.036  Score=50.38  Aligned_cols=76  Identities=13%  Similarity=0.196  Sum_probs=45.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---c--cchhccccccccC----------------------------cchhhHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---V--YRVLAASAAQLYS----------------------------PYVGEAE  223 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~--~~~~~i~~~~~~~----------------------------~~~g~~~  223 (390)
                      ....+-|.||||+|||||...++...   +  ..++.++.+.-+.                            ...|...
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~  129 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA  129 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccchh
Confidence            45569999999999999999998542   2  1222232221110                            0122233


Q ss_pred             HHHHHHHHHHHhcCCeEEEEcCCCCCCCh
Q psy11689        224 QNVTQLFHRARLAAPAILFIDEIERTYNC  252 (390)
Q Consensus       224 ~~i~~~f~~A~~~~p~il~lDEid~~l~~  252 (390)
                      ..............-+++|+.-+......
T Consensus       130 ~~~~~~i~~~~~~g~d~iiiETVG~gq~e  158 (323)
T d2qm8a1         130 AKTRETMLLCEAAGFDVILVETVGVGQSE  158 (323)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECSSSSCH
T ss_pred             HHHHHHHHhhccCCCCeEEEeehhhhhhh
Confidence            44555555555666789999888765543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.0082  Score=51.75  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=23.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      |+.+.+.|+-||||||+++.++..+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            67899999999999999999998765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.62  E-value=0.0096  Score=50.87  Aligned_cols=30  Identities=23%  Similarity=0.130  Sum_probs=25.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhccch
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVYRV  206 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~~~  206 (390)
                      .|..|.+.|+-||||||+++.++..+....
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~   31 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNC   31 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCC
Confidence            577899999999999999999998875443

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.53  E-value=0.034  Score=46.87  Aligned_cols=47  Identities=15%  Similarity=0.087  Sum_probs=29.6

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcC---CCCCceEEEEcCCCChHHHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLA---IPKPKGILLYGPPGCAKTSL  194 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~vLl~GppGtGKT~L  194 (390)
                      +++-.+...+.+.+.   .+..+-..+...   +-.++.+++.+|+|+|||+.
T Consensus         5 ~l~L~~~l~~~L~~~---g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTla   54 (206)
T d1s2ma1           5 DFYLKRELLMGIFEA---GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAA   54 (206)
T ss_dssp             GGCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHH
T ss_pred             HcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhh
Confidence            676667777777653   233333322211   12367899999999999943

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.0097  Score=48.63  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|+||+|||+|++.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3899999999999999998754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.50  E-value=0.012  Score=49.03  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHH
Q psy11689        180 GILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~  200 (390)
                      .|+|.|+||+|||||.+++.+
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            599999999999999999974

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.41  E-value=0.012  Score=51.78  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+-.|+|.|.||+|||+|+++|.++
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            4567999999999999999999844

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.061  Score=45.97  Aligned_cols=46  Identities=17%  Similarity=0.192  Sum_probs=31.3

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcC---CCCCceEEEEcCCCChHHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLA---IPKPKGILLYGPPGCAKTS  193 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~vLl~GppGtGKT~  193 (390)
                      +++-.+...+.|.+.-   +..+...+...   +-.++.+++..|+|||||.
T Consensus        21 ~l~L~~~l~~~L~~~g---~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTl   69 (222)
T d2j0sa1          21 TMGLREDLLRGIYAYG---FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA   69 (222)
T ss_dssp             GGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHH
T ss_pred             HCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhh
Confidence            8887788888887642   33333333211   2247889999999999994

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.38  E-value=0.011  Score=47.80  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|+..+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4889999999999999999754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.27  E-value=0.012  Score=47.57  Aligned_cols=22  Identities=14%  Similarity=0.332  Sum_probs=19.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|+||+|||+|+..+...
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988853

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.22  E-value=0.012  Score=49.29  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~  202 (390)
                      -|.|.|+.||||||+++.++..+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37889999999999999999765

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.0068  Score=52.07  Aligned_cols=26  Identities=23%  Similarity=0.221  Sum_probs=23.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .+.|.|.|+.||||||+++.++..+.
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45689999999999999999998763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.012  Score=48.63  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=19.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHH
Q psy11689        180 GILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~  200 (390)
                      .|++.|++|+|||+|++.+..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            389999999999999999984

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.16  E-value=0.01  Score=51.25  Aligned_cols=26  Identities=23%  Similarity=0.227  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +...+|.|+||+|||||++++..+..
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhh
Confidence            56789999999999999999976544

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.16  E-value=0.013  Score=47.66  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=19.4

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~  201 (390)
                      +++.|++|+|||+|++.+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            899999999999999999854

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.12  E-value=0.013  Score=52.11  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=16.4

Q ss_pred             CceEEEEcCCCChHHHH-HHHHH
Q psy11689        178 PKGILLYGPPGCAKTSL-VRTLA  199 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~L-a~aia  199 (390)
                      ...++|.|+||||||+. +..++
T Consensus        14 ~~~~lI~g~aGTGKTt~l~~rv~   36 (306)
T d1uaaa1          14 TGPCLVLAGAGSGKTRVITNKIA   36 (306)
T ss_dssp             SSEEEECCCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEeeCCccHHHHHHHHHH
Confidence            35589999999999965 44443

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.0096  Score=48.59  Aligned_cols=28  Identities=21%  Similarity=0.254  Sum_probs=22.8

Q ss_pred             cCCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689        173 LAIPKPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       173 ~~~~~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      +.......|.|.|+|++|||+|++++..
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhC
Confidence            3334566799999999999999999853

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.013  Score=47.34  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|.+|+|||+|++.+...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999999854

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.014  Score=47.15  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|.+|+|||+|++.+...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999999854

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.014  Score=47.46  Aligned_cols=22  Identities=41%  Similarity=0.603  Sum_probs=19.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .++|.|++|+|||+|++.+...
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999999853

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.95  E-value=0.013  Score=47.79  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHH
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~  200 (390)
                      .-.|++.|+||+|||+|++.+..
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhc
Confidence            35699999999999999999964

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.015  Score=47.47  Aligned_cols=22  Identities=23%  Similarity=0.526  Sum_probs=19.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|++.+...
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999998753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.81  E-value=0.015  Score=46.93  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|.+|+|||+|++.+...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999999754

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.0044  Score=51.08  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=20.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..+|+||+|+|||+++.||.--++
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            468899999999999999986553

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.016  Score=46.82  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=19.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|++.|++|+|||+|+..+...
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999999854

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.75  E-value=0.017  Score=47.03  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|++.+...
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3899999999999999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.016  Score=47.12  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|.+|+|||+|++.+...
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4999999999999999998753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.018  Score=46.75  Aligned_cols=22  Identities=23%  Similarity=0.523  Sum_probs=19.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|++.+...
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999999854

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.017  Score=46.83  Aligned_cols=21  Identities=29%  Similarity=0.531  Sum_probs=19.0

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~  201 (390)
                      |++.|.+|+|||+|++.+...
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999998753

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.61  E-value=0.019  Score=51.38  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=16.6

Q ss_pred             CceEEEEcCCCChHHHH-HHHHH
Q psy11689        178 PKGILLYGPPGCAKTSL-VRTLA  199 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~L-a~aia  199 (390)
                      ...+++.|+||||||+. +..++
T Consensus        24 ~g~~lV~g~aGSGKTt~l~~ri~   46 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVLTHRIA   46 (318)
T ss_dssp             SSCEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHHH
Confidence            45699999999999955 44444

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.019  Score=46.61  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|++.|.+|+|||+|+..+...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999999844

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.60  E-value=0.013  Score=48.28  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=18.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHH
Q psy11689        180 GILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~  200 (390)
                      .|.|.|+||+|||+|++++.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            388999999999999999963

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.55  E-value=0.021  Score=46.83  Aligned_cols=25  Identities=16%  Similarity=0.381  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+-.|.+.|.+|+|||+|++++...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4456999999999999999999854

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.51  E-value=0.015  Score=47.32  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      ..-.|++.|+||+|||+|++.+..
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            445699999999999999999973

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.02  Score=46.33  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|.+|+|||+|++.+...
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999998743

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.46  E-value=0.02  Score=45.96  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=19.3

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~  201 (390)
                      |++.|.+|+|||+|++.+...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999999853

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.42  E-value=0.02  Score=47.03  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|++.|.+|||||+|+..+...
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.40  E-value=0.017  Score=47.47  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=22.3

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHH
Q psy11689        174 AIPKPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       174 ~~~~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      +....-.|++.|++|+|||+|++.+..
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhc
Confidence            334556799999999999999999863

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.021  Score=46.15  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      ..|+|.|++|+|||+|++.+...
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999998754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.02  Score=46.63  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=19.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|++.|.+|+|||+|++.+...
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999998743

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.022  Score=46.52  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|++.|.+|+|||+|++.+...
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4999999999999999999753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.021  Score=46.52  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|.+|+|||+|++.+...
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5999999999999999998754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.02  Score=46.52  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|.||+|||+|++++.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.022  Score=45.73  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|++.|.+|+|||+|++.+...
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999999843

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.024  Score=45.88  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|++.+...
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3999999999999999998753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.023  Score=46.00  Aligned_cols=21  Identities=38%  Similarity=0.757  Sum_probs=18.9

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~  201 (390)
                      |++.|++|+|||+|++.+...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            889999999999999998743

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.11  E-value=0.013  Score=52.41  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=18.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      -|.+.|++|+||||++++++..++
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            699999999999999999987654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.09  E-value=0.024  Score=46.26  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|++.|.+|+|||+|+..+...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999998854

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.06  E-value=0.0092  Score=51.76  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=20.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      .+...+|.|+||+|||||++++..+...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~  123 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGL  123 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHh
Confidence            3566789999999999999999765443

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.06  E-value=0.025  Score=45.96  Aligned_cols=22  Identities=27%  Similarity=0.526  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|++.|++|+|||+|+..+...
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3899999999999999988754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.00  E-value=0.028  Score=45.38  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|.+|+|||+|++.+...
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999999753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.96  E-value=0.017  Score=47.24  Aligned_cols=20  Identities=30%  Similarity=0.494  Sum_probs=18.5

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy11689        181 ILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~  200 (390)
                      |.|.|.||+|||||++++.+
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            88999999999999999963

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=92.94  E-value=0.054  Score=44.31  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=19.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHH
Q psy11689        180 GILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~  200 (390)
                      .|.+.|.|++|||||++++.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999999974

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.86  E-value=0.028  Score=45.53  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|.+|+|||+|++.+...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999998753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.028  Score=45.72  Aligned_cols=20  Identities=30%  Similarity=0.602  Sum_probs=18.6

Q ss_pred             EEEEcCCCChHHHHHHHHHH
Q psy11689        181 ILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~  200 (390)
                      |+|.|.+|+|||+|++.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999999874

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.75  E-value=0.03  Score=45.27  Aligned_cols=22  Identities=23%  Similarity=0.455  Sum_probs=19.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|.+|+|||+|++.+...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999998744

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.72  E-value=0.029  Score=46.66  Aligned_cols=21  Identities=29%  Similarity=0.551  Sum_probs=19.1

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~  201 (390)
                      |++.|++|+|||+|+..+...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            899999999999999998743

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.70  E-value=0.01  Score=47.42  Aligned_cols=22  Identities=23%  Similarity=0.523  Sum_probs=19.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|.|.|.||+|||+|++++..+
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.058  Score=46.06  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .-.+|.|.-|+|||||++.+..+.
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            347999999999999999998653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.64  E-value=0.036  Score=49.46  Aligned_cols=29  Identities=28%  Similarity=0.415  Sum_probs=25.5

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +..|..++|.|++|+|||+|+..+++...
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            45789999999999999999999997554

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.031  Score=45.11  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|++.|.+|+|||+|++.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3899999999999999999754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.58  E-value=0.018  Score=46.92  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=9.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHH
Q psy11689        180 GILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~  200 (390)
                      .|++.|.+|+|||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998874

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.028  Score=46.10  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|.+|+|||+|++.+...
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35999999999999999998854

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.43  E-value=0.034  Score=45.02  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|.+|+|||+|++.+...
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999999854

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.10  E-value=0.024  Score=46.12  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=18.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|++|+|||+|+..+...
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999988643

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=92.03  E-value=0.064  Score=42.39  Aligned_cols=91  Identities=15%  Similarity=0.121  Sum_probs=44.6

Q ss_pred             EEEEcCCCChHHH-HHHHHH--Hhhccchhccccccc------cCcchhhHH-----HHHHHHHHHH----HhcCCeEEE
Q psy11689        181 ILLYGPPGCAKTS-LVRTLA--AHSVYRVLAASAAQL------YSPYVGEAE-----QNVTQLFHRA----RLAAPAILF  242 (390)
Q Consensus       181 vLl~GppGtGKT~-La~aia--~~~~~~~~~i~~~~~------~~~~~g~~~-----~~i~~~f~~A----~~~~p~il~  242 (390)
                      -+++||-.+|||+ |.+.+-  ...+.+++.+.....      .....|...     .....++...    ......+|+
T Consensus         5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvI~   84 (139)
T d2b8ta1           5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG   84 (139)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred             EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcccccccceEEcccCceeeeEEeccchhhHHHHHhhccccCcCEEE
Confidence            4789999999997 666663  333444443332210      001011000     0111222222    223578999


Q ss_pred             EcCCCCCCChhhHHHHHHHhhcCCCcEEEec
Q psy11689        243 IDEIERTYNCEYREQTADNAKKPRIPRTNGG  273 (390)
Q Consensus       243 lDEid~~l~~r~~~~~~~~~~~~~~~~i~~~  273 (390)
                      +||+.-+-+  .-......+...+...+..+
T Consensus        85 IDE~QFf~d--~i~~~~~~~~~~g~~Viv~G  113 (139)
T d2b8ta1          85 IDEVQFFDD--RICEVANILAENGFVVIISG  113 (139)
T ss_dssp             ECSGGGSCT--HHHHHHHHHHHTTCEEEEEC
T ss_pred             echhhhcch--hHHHHHHHHHhcCceEEEEE
Confidence            999987643  12333344444454444443

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.97  E-value=0.041  Score=45.10  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .++|.|.+|+|||+|++.+...
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.041  Score=45.27  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .++|.|.+|+|||+|+..+...
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            3899999999999999998754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.69  E-value=0.049  Score=50.28  Aligned_cols=25  Identities=16%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHH
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      ..+.--+|+||+|+|||+++.||+-
T Consensus        23 ~~~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          23 GESNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3344568999999999999999964

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.60  E-value=0.044  Score=45.24  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=19.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|++|+|||+|+..+...
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988744

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.55  E-value=0.034  Score=49.34  Aligned_cols=23  Identities=17%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      .-.+|+||+|||||++..|++--
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~   47 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWV   47 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35689999999999999999743

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.16  E-value=0.051  Score=44.70  Aligned_cols=20  Identities=25%  Similarity=0.516  Sum_probs=18.3

Q ss_pred             eEEEEcCCCChHHHHHHHHH
Q psy11689        180 GILLYGPPGCAKTSLVRTLA  199 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia  199 (390)
                      .++|.|.+|+|||+|++.+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48999999999999999983

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.89  E-value=0.067  Score=47.69  Aligned_cols=35  Identities=14%  Similarity=0.255  Sum_probs=26.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh-----hccchhcccc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH-----SVYRVLAASA  211 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~-----~~~~~~~i~~  211 (390)
                      ....+-|.|.|.+|||||.+++...     .++||..++.
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~p   48 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP   48 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccC
Confidence            4456999999999999999999743     3466665543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.075  Score=43.39  Aligned_cols=23  Identities=17%  Similarity=0.252  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~  201 (390)
                      -.+++.|.+|+|||+|+..+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45999999999999999988754

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.24  E-value=0.1  Score=45.75  Aligned_cols=27  Identities=26%  Similarity=0.289  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      ..++.+++.|.-|+||||++.++|..+
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHH
Confidence            468889999999999999999888543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.16  E-value=0.07  Score=45.29  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .|+|.|++|+|||+|++.+...
T Consensus         8 KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5999999999999999998643

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.13  E-value=0.078  Score=48.25  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=22.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..|.|.|+-|+||||+++.+++.++
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhc
Confidence            4689999999999999999998875

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.081  Score=49.32  Aligned_cols=34  Identities=29%  Similarity=0.487  Sum_probs=24.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHHh---hccchhcccc
Q psy11689        178 PKGILLYGPPGCAKTSLVRTLAAH---SVYRVLAASA  211 (390)
Q Consensus       178 ~~~vLl~GppGtGKT~La~aia~~---~~~~~~~i~~  211 (390)
                      .+++++.|++|+|||++++.+..+   .+.+++.++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            468999999999999988777633   2344444443

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.02  E-value=0.15  Score=44.90  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=21.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHH
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLA  199 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia  199 (390)
                      +-.+..++|.|++|+|||+|+..++
T Consensus        64 ig~GQr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          64 VGRGQRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             CBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred             ccCCceEeeccCCCCChHHHHHHHH
Confidence            4478889999999999999987655

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.82  E-value=0.14  Score=45.10  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=22.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh----hccchhccc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH----SVYRVLAAS  210 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~----~~~~~~~i~  210 (390)
                      -.+-|.|-|.+|||||..++...    .++||-.+.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~   38 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIE   38 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCC
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCC
Confidence            35889999999999999999733    345565444

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.81  E-value=0.11  Score=42.47  Aligned_cols=22  Identities=18%  Similarity=0.422  Sum_probs=19.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHHh
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~  201 (390)
                      .+++.|.+|+|||+|+..+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999644

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.53  E-value=0.12  Score=45.32  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=21.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      +++.+.|+.|+|||||+.++...+|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            5789999999999999999975554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.45  E-value=0.12  Score=45.52  Aligned_cols=27  Identities=33%  Similarity=0.423  Sum_probs=23.8

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      +-.|..++|.|++|+|||+|+..++..
T Consensus        65 igkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          65 YAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            347888999999999999999999865

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.40  E-value=0.13  Score=45.51  Aligned_cols=27  Identities=11%  Similarity=0.041  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      .-+++.+.|+.|+|||||+.++...++
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            346899999999999999999985544

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.69  E-value=0.55  Score=40.89  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=20.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHH
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLA  199 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia  199 (390)
                      ..+..-||+|..|||||.++-..+
T Consensus       102 ~~~m~rLL~GdvGSGKT~Va~~a~  125 (264)
T d1gm5a3         102 EKPMNRLLQGDVGSGKTVVAQLAI  125 (264)
T ss_dssp             SSCCCCEEECCSSSSHHHHHHHHH
T ss_pred             cCcceeeeeccccccccHHHHHHH
Confidence            567789999999999998776665

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.53  E-value=0.16  Score=43.13  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=19.4

Q ss_pred             EEEEcCCCChHHHHHHHHHHh
Q psy11689        181 ILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia~~  201 (390)
                      |.+.|.|++|||||+.++...
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHhh
Confidence            899999999999999999754

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=87.40  E-value=0.68  Score=39.47  Aligned_cols=87  Identities=20%  Similarity=0.139  Sum_probs=46.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHHh---hccchhccccccccCcchhhHHHHHHHHHHHHHh----cCCeEEEEcCCCC
Q psy11689        176 PKPKGILLYGPPGCAKTSLVRTLAAH---SVYRVLAASAAQLYSPYVGEAEQNVTQLFHRARL----AAPAILFIDEIER  248 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~La~aia~~---~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~A~~----~~p~il~lDEid~  248 (390)
                      ..+...||+|..|+|||.++-..+..   .|..++.+.....          .-.+.+.....    ....|.++   .+
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~----------La~Q~~~~~~~~~~~~~~~v~~l---~~  140 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL----------LAQQHYDNFRDRFANWPVRIEMI---SR  140 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHH----------HHHHHHHHHHHHSTTTTCCEEEE---ST
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHH----------hHHHHHHHHHHHHhhCCCEEEec---cC
Confidence            56788999999999999876655533   3444443332221          11122222221    22223333   33


Q ss_pred             CCChhhHHHHHHHhhcCCCcEEEeccC
Q psy11689        249 TYNCEYREQTADNAKKPRIPRTNGGYR  275 (390)
Q Consensus       249 ~l~~r~~~~~~~~~~~~~~~~i~~~~~  275 (390)
                      .............+.......+.++|.
T Consensus       141 ~~~~~~~~~~~~~~~~g~~~iviGths  167 (233)
T d2eyqa3         141 FRSAKEQTQILAEVAEGKIDILIGTHK  167 (233)
T ss_dssp             TSCHHHHHHHHHHHHTTCCSEEEECTH
T ss_pred             cccchhHHHHHHHHhCCCCCEEEeehh
Confidence            344444555556666666666666664

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.20  E-value=0.11  Score=43.22  Aligned_cols=20  Identities=35%  Similarity=0.409  Sum_probs=17.0

Q ss_pred             CCceEEEEcCCCChHHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVR  196 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~  196 (390)
                      .++.+++.+|+|+|||+.+-
T Consensus        39 ~~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHHH
Confidence            46789999999999998763

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=87.00  E-value=0.14  Score=46.47  Aligned_cols=25  Identities=28%  Similarity=0.308  Sum_probs=22.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHHhhcc
Q psy11689        180 GILLYGPPGCAKTSLVRTLAAHSVY  204 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~~~~~  204 (390)
                      .|.|.|+-|+||||+++.++..+..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4889999999999999999987653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.92  E-value=0.16  Score=41.11  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=18.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHH
Q psy11689        180 GILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       180 ~vLl~GppGtGKT~La~aia~  200 (390)
                      .++|.|..|+|||+|++.+..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999998853

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.81  E-value=0.17  Score=41.48  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=17.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHH
Q psy11689        179 KGILLYGPPGCAKTSLVRTLA  199 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia  199 (390)
                      ..+++++|.|+|||.++-.++
T Consensus        24 ~n~lv~~pTGsGKT~i~~~~~   44 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAMMIA   44 (200)
T ss_dssp             SCEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHHHHH
Confidence            458899999999998766555

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.49  E-value=0.17  Score=47.03  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAA  200 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~  200 (390)
                      .+-.|.+.|.||+|||+|.+++.+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            456799999999999999999974

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.19  E-value=0.18  Score=42.28  Aligned_cols=49  Identities=12%  Similarity=0.062  Sum_probs=31.1

Q ss_pred             CCCccChHHHHHHHHHHHhccccCHHHhhhcC---CCCCceEEEEcCCCChHHHH
Q psy11689        143 VPELGGLKGVRALMEKTVEWPFKYAREFERLA---IPKPKGILLYGPPGCAKTSL  194 (390)
Q Consensus       143 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~vLl~GppGtGKT~L  194 (390)
                      |++++-.++..+.+.+.   .+..+...+...   +-.++.+++..|+|||||.-
T Consensus         3 F~dl~L~~~l~~~l~~~---g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla   54 (207)
T d1t6na_           3 FRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV   54 (207)
T ss_dssp             STTSCCCHHHHHHHHHT---TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred             ccccCcCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCeEEEeccccccccc
Confidence            34777777777777653   234433333221   23478899999999999843

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=86.18  E-value=0.12  Score=46.92  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHhhc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAHSV  203 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~~~  203 (390)
                      ..|.|.|+-|+||||+++.++..++
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhC
Confidence            3488999999999999999987764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.18  E-value=0.21  Score=41.74  Aligned_cols=25  Identities=20%  Similarity=0.113  Sum_probs=21.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      |.-++.+.|.+++|||||+.++...
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHH
Confidence            3356899999999999999999644

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.01  E-value=0.17  Score=45.45  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=16.9

Q ss_pred             CCceEEEEcCCCChHHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVR  196 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~  196 (390)
                      .+...|++|.+|||||||..
T Consensus        13 ~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHTC
T ss_pred             CCCEEEEEccCCCCcccccc
Confidence            35668999999999999764

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.26  E-value=0.13  Score=43.91  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=18.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLA  199 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia  199 (390)
                      .++.+++.+|+|+|||+.+-..+
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHHH
Confidence            46789999999999997654444

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.08  E-value=0.31  Score=40.91  Aligned_cols=48  Identities=15%  Similarity=0.086  Sum_probs=32.3

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcC---CCCCceEEEEcCCCChHHHHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLA---IPKPKGILLYGPPGCAKTSLV  195 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~vLl~GppGtGKT~La  195 (390)
                      +++-.++..+.+.+.-   +..+...+...   +-.++.+++.+|+|||||...
T Consensus        14 ~l~l~~~l~~~L~~~g---~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~   64 (212)
T d1qdea_          14 DMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF   64 (212)
T ss_dssp             GGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred             hCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHHcCCCEEeecccccchhhhh
Confidence            8877777787776632   44443333222   235788999999999999543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=84.72  E-value=0.24  Score=44.30  Aligned_cols=19  Identities=32%  Similarity=0.499  Sum_probs=16.5

Q ss_pred             CCceEEEEcCCCChHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLV  195 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La  195 (390)
                      .+..-|+.|.+|||||||.
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4566899999999999987

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.20  E-value=0.26  Score=42.56  Aligned_cols=33  Identities=15%  Similarity=0.363  Sum_probs=24.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHHh---hccchhcccc
Q psy11689        179 KGILLYGPPGCAKTSLVRTLAAH---SVYRVLAASA  211 (390)
Q Consensus       179 ~~vLl~GppGtGKT~La~aia~~---~~~~~~~i~~  211 (390)
                      +.|.++|.=|+||||++-.+|..   .|..+..+++
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~   37 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGC   37 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEec
Confidence            45788999999999999888744   3455555554

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.09  E-value=0.32  Score=42.07  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh---ccchhcccc
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS---VYRVLAASA  211 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~---~~~~~~i~~  211 (390)
                      ..+-+.+.|.-|+||||++-.+|..+   |..+..+++
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~   56 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTS   56 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            45667888999999999887777443   455554444

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=83.99  E-value=0.29  Score=40.33  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=23.5

Q ss_pred             ceEEEEcC-CCChHHHHHHHHHHhh---ccchhccc
Q psy11689        179 KGILLYGP-PGCAKTSLVRTLAAHS---VYRVLAAS  210 (390)
Q Consensus       179 ~~vLl~Gp-pGtGKT~La~aia~~~---~~~~~~i~  210 (390)
                      +.++++|- +|+||||++-.+|..+   |..+..++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            46899999 5999999999888543   44544443

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.60  E-value=0.16  Score=42.29  Aligned_cols=46  Identities=13%  Similarity=0.081  Sum_probs=29.1

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcCC---CCCceEEEEcCCCChHHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLAI---PKPKGILLYGPPGCAKTS  193 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~vLl~GppGtGKT~  193 (390)
                      +++-.+...+.+++.   .+..+...+...+   -.++.+++..|+|||||.
T Consensus         5 ~l~L~~~l~~~l~~~---g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTl   53 (209)
T d1q0ua_           5 RFPFQPFIIEAIKTL---RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTH   53 (209)
T ss_dssp             GSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHH
T ss_pred             cCCcCHHHHHHHHHC---CCCCCCHHHHHHHHHHHCCCCeEeecccccccce
Confidence            666666676666652   2344333332211   236789999999999996

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.15  E-value=0.3  Score=43.77  Aligned_cols=19  Identities=26%  Similarity=0.473  Sum_probs=16.6

Q ss_pred             CCceEEEEcCCCChHHHHH
Q psy11689        177 KPKGILLYGPPGCAKTSLV  195 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La  195 (390)
                      .+..-|+.|-+|||||||.
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4566799999999999998

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.96  E-value=0.38  Score=36.72  Aligned_cols=26  Identities=15%  Similarity=0.080  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHHhh
Q psy11689        177 KPKGILLYGPPGCAKTSLVRTLAAHS  202 (390)
Q Consensus       177 ~~~~vLl~GppGtGKT~La~aia~~~  202 (390)
                      .+-.+++.|-+|+||++||+++...+
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            46679999999999999999997554

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.81  E-value=0.35  Score=42.72  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=22.8

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHHh
Q psy11689        175 IPKPKGILLYGPPGCAKTSLVRTLAAH  201 (390)
Q Consensus       175 ~~~~~~vLl~GppGtGKT~La~aia~~  201 (390)
                      +-.+..++|.|++|+|||+|+..++..
T Consensus        65 ig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          65 IGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            457888999999999999998877643

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.06  E-value=0.29  Score=41.31  Aligned_cols=48  Identities=13%  Similarity=0.099  Sum_probs=31.6

Q ss_pred             CccChHHHHHHHHHHHhccccCHHHhhhcC---CCCCceEEEEcCCCChHHHHH
Q psy11689        145 ELGGLKGVRALMEKTVEWPFKYAREFERLA---IPKPKGILLYGPPGCAKTSLV  195 (390)
Q Consensus       145 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~vLl~GppGtGKT~La  195 (390)
                      +++-.+...+.+.+.   .+..+...+...   +-.++.+++..|+|||||...
T Consensus        16 ~l~L~~~l~~~L~~~---g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlay   66 (218)
T d2g9na1          16 DMNLSESLLRGIYAY---GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF   66 (218)
T ss_dssp             GSCCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHH
T ss_pred             HCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhh
Confidence            787777777777653   244443333222   224688999999999999544

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.37  E-value=0.39  Score=42.66  Aligned_cols=19  Identities=21%  Similarity=0.403  Sum_probs=17.9

Q ss_pred             EEEEcCCCChHHHHHHHHH
Q psy11689        181 ILLYGPPGCAKTSLVRTLA  199 (390)
Q Consensus       181 vLl~GppGtGKT~La~aia  199 (390)
                      |.|.|.|.+|||||.+++-
T Consensus         3 v~lvG~pn~GKStlfn~lt   21 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAAT   21 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EeEECCCCCCHHHHHHHHH
Confidence            7899999999999999995

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=80.25  E-value=0.32  Score=42.42  Aligned_cols=18  Identities=28%  Similarity=0.329  Sum_probs=16.2

Q ss_pred             CCCceEEEEcCCCChHHH
Q psy11689        176 PKPKGILLYGPPGCAKTS  193 (390)
Q Consensus       176 ~~~~~vLl~GppGtGKT~  193 (390)
                      ..++.+++.+|+|+|||+
T Consensus         7 ~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             STTCEEEECCCTTSSTTT
T ss_pred             hcCCcEEEEECCCCCHHH
Confidence            478889999999999995