Psyllid ID: psy11698

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQDRIIEIYRGK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHEEccccccccHcccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccHEEHccc
Coil and Loop (DISEMBL)
mppwirgmflhYLPIVLLMKRPKKTRLRWMmempgmsvpphpsygspaelprhitpsapskskmevmelsdlhhpnckinRKARVMElsdlhhpnckinrkasterresessdslllspeaskATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAgtlgilmdaphifeyvdqdRIIEIYRGK
Flexible Loop (DISEMBL)
MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPSKSKMEVMELSDLHHPNCKINRKARVmelsdlhhpnckinrkasterresessdslllspeasKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQDRIIEIYRGK
Low Complexity Region (SEG)
MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKAsterresessdslllspeasKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQDRIIEIYRGK
Disordered region (IsUnstruct)
***WIRGMFLHYLPIVLLMKRPKKTRLRWM*************************************************************************************************VEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQDRIIEIY***
Disordered Region (DISOPRED)
*PPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGS*******************VMELSDLHHPNCKINR**********************************LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQDRIIEIYRG*
Disordered Region (DISEMBL)
MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKIN**********************SKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQDRIIEIYRGK
Disordered Region (DISPRO)
MPPWIRGMFLHYLPIVLLMKRPK*********************************************LSDLHHPNCKINRKARV******************************LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQDRIIEIYRG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQDRIIEIYRGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
P04755	521	Acetylcholine receptor su	yes	N/A	0.903	0.341	0.730	1e-80
P48181	493	Acetylcholine receptor su	yes	N/A	0.756	0.302	0.335	4e-25
P48182	575	Acetylcholine receptor su	no	N/A	0.954	0.326	0.347	4e-24
Q93149	487	Acetylcholine receptor su	no	N/A	0.766	0.310	0.317	1e-22
Q27218	507	Acetylcholine receptor su	no	N/A	0.725	0.282	0.317	3e-20
P32297	505	Neuronal acetylcholine re	yes	N/A	0.771	0.300	0.338	6e-19
Q07263	495	Neuronal acetylcholine re	yes	N/A	0.776	0.309	0.324	6e-18
Q8R4G9	499	Neuronal acetylcholine re	yes	N/A	0.746	0.294	0.303	2e-17
P09481	496	Neuronal acetylcholine re	yes	N/A	0.807	0.320	0.318	2e-17
P26153	470	Neuronal acetylcholine re	no	N/A	0.675	0.282	0.296	6e-17

>sp|P04755|ACH3_DROME Acetylcholine receptor subunit beta-like 1 OS=Drosophila melanogaster GN=nAcRbeta-64B PE=2 SV=1

 Score =  298 bits (763), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 152/208 (73%), Positives = 164/208 (78%), Gaps = 30/208 (14%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVP--PHPSYGSPAELPRHITPSA 58
           MP +IR +FLHYLP  L MKRP+KTRLRWMMEMPGMS+P  PHPSYGSPAELP+HI+   
Sbjct: 333 MPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIG 392

Query: 59  PSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTE---------RRES 109
             +SKMEVMELSD                   LHHPNCKINRK ++          RRES
Sbjct: 393 GKQSKMEVMELSD-------------------LHHPNCKINRKVNSGGELGLGDGCRRES 433

Query: 110 ESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTA 169
           ESSDS+LLSPEASKATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVTTA
Sbjct: 434 ESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTA 493

Query: 170 GTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           GT+GILMDAPHIFEYVDQDRIIEIYRGK
Sbjct: 494 GTVGILMDAPHIFEYVDQDRIIEIYRGK 521

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
Drosophila melanogaster (taxid: 7227)

>sp|P48181|ACH2_CAEEL Acetylcholine receptor subunit beta-type unc-29 OS=Caenorhabditis elegans GN=unc-29 PE=2 SV=2

 Score =  114 bits (285), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 98/197 (49%), Gaps = 48/197 (24%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLR-----WMMEMPGMSVPPHPSYGSPAELPRHIT 55
           MP W+R +FL +LP ++ MKRPK    R      M ++PG+                 ++
Sbjct: 327 MPQWVRVVFLQFLPKLVCMKRPKSASERSAVRSGMAQLPGVG-------------QFTLS 373

Query: 56  PSAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSL 115
           PSA              HHP C                P+             +E+S   
Sbjct: 374 PSA--------------HHPLC----------------PSADDRTTTIRNTASNETSAYY 403

Query: 116 LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGIL 175
            LS +A +A +A+E+I EHL+ ++Q+   R+DWKYVAM+IDRL LY+FF +T  GT GIL
Sbjct: 404 PLSTDALRAIDAIEYITEHLKRDEQHKSFRDDWKYVAMIIDRLLLYVFFGITVGGTCGIL 463

Query: 176 MDAPHIFEYVDQDRIIE 192
             APH+F+ +DQ  +++
Sbjct: 464 FSAPHVFQRIDQQEMLD 480

Acetylcholine receptor.

Caenorhabditis elegans (taxid: 6239)

>sp|P48182|ACR2_CAEEL Acetylcholine receptor subunit beta-type acr-2 OS=Caenorhabditis elegans GN=acr-2 PE=2 SV=1

 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 28/216 (12%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRL--RWMME-------------MPGMSVPPHPSYG 45
           MP W+R +FL +LP +L+MKRP++  +   + +E             MP M+    P   
Sbjct: 361 MPTWVRKVFLEFLPHLLVMKRPERIPIFNGYFVEEYCASEIFDASLVMPSMTATMLPFLQ 420

Query: 46  SPAELPRHITPSAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTE 105
               L      +A S S  +  E    HH NC   +K   + +S    P  +++  +   
Sbjct: 421 VTTNLK-----AASSTSSGQSSE----HHENCSKWKKRLSIRMSKRRAPRARLDDDSEDI 471

Query: 106 RRESESS--DSLL--LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLY 161
             ++  +  DSL   +S E     EA+ +IAEH++ E    ++R+DWKYVAMV+DRL L 
Sbjct: 472 IDDTNGNHVDSLQEKISKEMKTTVEAIAYIAEHMKREMSLKKMRDDWKYVAMVLDRLILL 531

Query: 162 IFFIVTTAGTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           IFF VT  GTLGI+  APH+F++VDQ+ II     K
Sbjct: 532 IFFGVTLGGTLGIICSAPHVFDFVDQEAIISKLNAK 567

Acetylcholine receptor.

Caenorhabditis elegans (taxid: 6239)

>sp|Q93149|ACR3_CAEEL Acetylcholine receptor subunit beta-type acr-3 OS=Caenorhabditis elegans GN=acr-3 PE=2 SV=1

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 41/192 (21%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP W++ +FL +LP++ +M+RP+ T                      A++ R        
Sbjct: 324 MPNWVKTVFLKFLPVLFVMRRPESTE------------------KELAKMKREKRERRSM 365

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
           KS ++                             + KI+ +     R+  SS    LS +
Sbjct: 366 KSALKTF-----------------------FKRNDAKISEQPKQTSRKDGSSSEEKLSSD 402

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
           A KA EA+E+I  HL  ++ + + RE+WK+V++VIDRL LY+FF VTT GT+GIL+ AP+
Sbjct: 403 AKKAIEAIEYITTHLTHDNAFKRQREEWKFVSVVIDRLLLYLFFAVTTGGTVGILLSAPN 462

Query: 181 IFEYVDQDRIIE 192
           +FE V+Q  +IE
Sbjct: 463 VFEQVNQTSVIE 474

Possible acetylcholine receptor.

Caenorhabditis elegans (taxid: 6239)

>sp|Q27218|ACH7_CAEEL Acetylcholine receptor subunit beta-type lev-1 OS=Caenorhabditis elegans GN=lev-1 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 52/195 (26%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRL-----RWMMEMPGMSVPPHPSYGSPAELPRHIT 55
           +PPW+R +FL  LP+++ M+RP +  +     R ++E  G SV  +P             
Sbjct: 335 LPPWVRKVFLDILPLLMCMQRPHRKNVIQRSHRRLLE-TGPSVEENPMRSGE-------- 385

Query: 56  PSAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSL 115
                                               HHP C+      + RR    SD L
Sbjct: 386 ------------------------------------HHPLCRHTHNQDSCRRVRIQSDEL 409

Query: 116 --LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLG 173
              LSPEA +A +A+EFI E+ R E+   Q R+DWK++A V+DR  LY FF  T  GT+G
Sbjct: 410 DDELSPEAQRAIDAIEFITENRRDEEITKQFRDDWKFIASVVDRFLLYGFFGATVGGTIG 469

Query: 174 ILMDAPHIFEYVDQD 188
           I+  AP +FE  D++
Sbjct: 470 IIFTAPSVFETFDEN 484

Acetylcholine receptor.

Caenorhabditis elegans (taxid: 6239)

>sp|P32297|ACHA3_HUMAN Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4

 Score = 94.0 bits (232), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 31/183 (16%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPR-HITPSAP 59
           MP W++ +FL+ LP V+ M RP            G +  P P YG  AEL   +    A 
Sbjct: 338 MPSWVKTVFLNLLPRVMFMTRPTSNE--------GNAQKPRPLYG--AELSNLNCFSRAE 387

Query: 60  SKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKAS--TERRESESSDSLL- 116
           SK   E     D     C              HH   KI+  ++  T    SES D++L 
Sbjct: 388 SKGCKEGYPCQDGMCGYC--------------HHRRIKISNFSANLTRSSSSESVDAVLS 433

Query: 117 ---LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLG 173
              LSPE  +A ++V++IAE+++++++  +I++DWKYVAMVIDR+ L++F +V   GT G
Sbjct: 434 LSALSPEIKEAIQSVKYIAENMKAQNEAKEIQDDWKYVAMVIDRIFLWVFTLVCILGTAG 493

Query: 174 ILM 176
           + +
Sbjct: 494 LFL 496

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Homo sapiens (taxid: 9606)

>sp|Q07263|ACHA3_BOVIN Neuronal acetylcholine receptor subunit alpha-3 OS=Bos taurus GN=CHRNA3 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 29/182 (15%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP W++ +FL+ LP V+ M RP            G +  P P Y   AEL          
Sbjct: 328 MPAWVKTIFLNLLPRVMFMTRPASNE--------GNTQRPRPFYS--AEL---------- 367

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKAS--TERRESESSDSLL-- 116
            S +     S +    CK     +       HH   KI+  ++  T    SES D++L  
Sbjct: 368 -SNLNC--FSRIESKVCKEGYPCQDGLCGYCHHRRAKISNFSANLTRSSSSESVDAVLSL 424

Query: 117 --LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGI 174
             LSPE  +A ++V++IAE+++++++  +I++DWKYVAMVIDR+ L++F +V   GT G+
Sbjct: 425 SALSPEIKEAIQSVKYIAENMKAQNEAKEIQDDWKYVAMVIDRIFLWVFILVCILGTAGL 484

Query: 175 LM 176
            +
Sbjct: 485 FL 486

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Bos taurus (taxid: 9913)

>sp|Q8R4G9|ACHA3_MOUSE Neuronal acetylcholine receptor subunit alpha-3 OS=Mus musculus GN=Chrna3 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 41/188 (21%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP W++ +FL+ LP V+ M RP  T                                AP 
Sbjct: 332 MPTWVKAVFLNLLPRVMFMTRPTSTE-----------------------------EDAPK 362

Query: 61  KSKMEVMELSDLH------HPNCKINRKARVMELSDLHHPNCKINRKAS--TERRESESS 112
                  ELS+L+        +CK     +       HH   KI+  ++  T    SES 
Sbjct: 363 TRNFYGAELSNLNCFSRADSKSCKEGYPCQDGTCGYCHHRRVKISNFSANLTRSSSSESV 422

Query: 113 DSLL----LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTT 168
           D++L    LSPE  +A ++V++IAE++++++   +I++DWKYVAMVIDR+ L++F +V  
Sbjct: 423 DAVLSLSALSPEIKEAIQSVKYIAENMKAQNVAKEIQDDWKYVAMVIDRIFLWVFILVCI 482

Query: 169 AGTLGILM 176
            GT G+ +
Sbjct: 483 LGTAGLFL 490

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Mus musculus (taxid: 10090)

>sp|P09481|ACHA3_CHICK Neuronal acetylcholine receptor subunit alpha-3 OS=Gallus gallus GN=CHRNA3 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 17/176 (9%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP W+R +FL+ LP ++ M RP              +  P P Y S      +   S+  
Sbjct: 329 MPVWVRTIFLNLLPRIMFMTRPTSDEEN--------NQKPKPFYTSEFS-NLNCFNSSEI 379

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
           K   +     D+    C+  R    M+ SD       + R +S+E  +   S S+L SPE
Sbjct: 380 KCCKDGFVCQDMACSCCQYQR----MKFSDFSG---NLTRSSSSESVDPLFSFSVL-SPE 431

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILM 176
              A E+V++IAE+++ +++  +I++DWKYVAMVIDR+ L++F +V   GT G+ +
Sbjct: 432 MRDAIESVKYIAENMKMQNEAKEIQDDWKYVAMVIDRIFLWVFILVCILGTAGLFL 487

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Gallus gallus (taxid: 9031)

>sp|P26153|ACHB4_CHICK Neuronal acetylcholine receptor subunit beta-4 (Fragment) OS=Gallus gallus GN=CHRNB4 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 59/192 (30%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MPPW++ +FL  LP  L MKRP+                      SP + P         
Sbjct: 309 MPPWVKLVFLERLPAYLFMKRPEN--------------------NSPRQKP--------- 339

Query: 61  KSKMEVMELSDLHHPNCKINRKARV-MELSDLHHPNCKINRKASTERRESESSDSL---- 115
                          NCK  R   + M+ +D +  +      AS ++ + + +D+L    
Sbjct: 340 --------------ANCKKTRAENLCMDPADFYKNSTYFVNTASAKKYDMKITDTLDNVS 385

Query: 116 -----------LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFF 164
                        SPE  +A + V FIAEH++S+D    + EDWKYVAMV+DRL L+IF 
Sbjct: 386 SHQDFRLRTGTKFSPEVQEAIDGVSFIAEHMKSDDNDQSVIEDWKYVAMVVDRLFLWIFV 445

Query: 165 IVTTAGTLGILM 176
           +V   GT+G+ +
Sbjct: 446 LVCVLGTVGLFL 457

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
195374590	521	GJ12715 [Drosophila virilis] gi|19415324	0.903	0.341	0.740	3e-80
195125177	521	GI12728 [Drosophila mojavensis] gi|19391	0.903	0.341	0.740	3e-80
118779256	519	AGAP000966-PA [Anopheles gambiae str. PE	0.903	0.342	0.733	5e-80
195429058	521	GK16583 [Drosophila willistoni] gi|19415	0.903	0.341	0.735	8e-80
312381887	519	hypothetical protein AND_05738 [Anophele	0.903	0.342	0.728	2e-79
198462958	522	GA10937 [Drosophila pseudoobscura pseudo	0.903	0.340	0.730	6e-79
194866521	521	GG15229 [Drosophila erecta] gi|190653683	0.903	0.341	0.730	6e-79
170061959	519	acetylcholine receptor subunit beta-type	0.903	0.342	0.723	6e-79
24657653	521	nicotinic acetylcholine receptor beta 64	0.903	0.341	0.730	7e-79
113060	521	RecName: Full=Acetylcholine receptor sub	0.903	0.341	0.730	7e-79

>gi|195374590|ref|XP_002046087.1| GJ12715 [Drosophila virilis] gi|194153245|gb|EDW68429.1| GJ12715 [Drosophila virilis]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 154/208 (74%), Positives = 165/208 (79%), Gaps = 30/208 (14%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVP--PHPSYGSPAELPRHITPSA 58
           MP WIR +FLHYLP  LLMKRP+KTRLRWMMEMPGMS+P  PHPSYGSPAELP+HI+   
Sbjct: 333 MPMWIRSVFLHYLPAFLLMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIG 392

Query: 59  PSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTE---------RRES 109
             +SKMEVMELSD                   LHHPNCKINRK ++          RRES
Sbjct: 393 GKQSKMEVMELSD-------------------LHHPNCKINRKVNSGAELGLGDGCRRES 433

Query: 110 ESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTA 169
           ESSDS+LLSPEASKATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVTTA
Sbjct: 434 ESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTA 493

Query: 170 GTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           GT+GILMDAPHIFEYVDQDRIIEIYRGK
Sbjct: 494 GTIGILMDAPHIFEYVDQDRIIEIYRGK 521

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195125177|ref|XP_002007058.1| GI12728 [Drosophila mojavensis] gi|193918667|gb|EDW17534.1| GI12728 [Drosophila mojavensis]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 154/208 (74%), Positives = 165/208 (79%), Gaps = 30/208 (14%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVP--PHPSYGSPAELPRHITPSA 58
           MP WIR +FLHYLP  LLMKRP+KTRLRWMMEMPGMS+P  PHPSYGSPAELP+HI+   
Sbjct: 333 MPMWIRSVFLHYLPAFLLMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIG 392

Query: 59  PSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTE---------RRES 109
             +SKMEVMELSD                   LHHPNCKINRK ++          RRES
Sbjct: 393 GKQSKMEVMELSD-------------------LHHPNCKINRKVNSGAELGLGDGCRRES 433

Query: 110 ESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTA 169
           ESSDS+LLSPEASKATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVTTA
Sbjct: 434 ESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTA 493

Query: 170 GTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           GT+GILMDAPHIFEYVDQDRIIEIYRGK
Sbjct: 494 GTIGILMDAPHIFEYVDQDRIIEIYRGK 521

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118779256|ref|XP_309158.3| AGAP000966-PA [Anopheles gambiae str. PEST] gi|51873097|gb|AAU12514.1| nicotinic acetylcholine receptor subunit beta 1 [Anopheles gambiae] gi|116131844|gb|EAA04968.3| AGAP000966-PA [Anopheles gambiae str. PEST]

 Score =  302 bits (773), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 166/210 (79%), Gaps = 32/210 (15%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPP----HPSYGSPAELPRHITP 56
           MP WIR +FLHYLP +LLMKRP+KTRLRWMMEMPGMSVPP    HPSYGSPAE+P+HI+ 
Sbjct: 329 MPMWIRSVFLHYLPAMLLMKRPRKTRLRWMMEMPGMSVPPQPHTHPSYGSPAEIPKHISA 388

Query: 57  SAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRK---------ASTERR 107
               +SKMEVMELSD                   LHHPNCK+NRK         A + RR
Sbjct: 389 LGAKQSKMEVMELSD-------------------LHHPNCKMNRKLNSGDLGIGADSCRR 429

Query: 108 ESESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVT 167
           ESESSDS+LLSPEASKATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVT
Sbjct: 430 ESESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVT 489

Query: 168 TAGTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           TAGT+GILMDAPHIFEYVDQDRIIEIYRGK
Sbjct: 490 TAGTVGILMDAPHIFEYVDQDRIIEIYRGK 519

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195429058|ref|XP_002062581.1| GK16583 [Drosophila willistoni] gi|194158666|gb|EDW73567.1| GK16583 [Drosophila willistoni]

 Score =  301 bits (771), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 153/208 (73%), Positives = 164/208 (78%), Gaps = 30/208 (14%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVP--PHPSYGSPAELPRHITPSA 58
           MP WIR +FLHYLP  L MKRP+KTRLRWMMEMPGMS+P  PHPSYGSPAELP+HI+   
Sbjct: 333 MPMWIRSVFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIG 392

Query: 59  PSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTE---------RRES 109
             +SKMEVMELSD                   LHHPNCKINRK ++          RRES
Sbjct: 393 GKQSKMEVMELSD-------------------LHHPNCKINRKVNSGAELGLGDGCRRES 433

Query: 110 ESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTA 169
           ESSDS+LLSPEASKATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVTTA
Sbjct: 434 ESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTA 493

Query: 170 GTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           GT+GILMDAPHIFEYVDQDRIIEIYRGK
Sbjct: 494 GTVGILMDAPHIFEYVDQDRIIEIYRGK 521

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381887|gb|EFR27520.1| hypothetical protein AND_05738 [Anopheles darlingi]

 Score =  300 bits (768), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 153/210 (72%), Positives = 165/210 (78%), Gaps = 32/210 (15%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPP----HPSYGSPAELPRHITP 56
           MP WIR +FLHYLP +LLMKRP+KTRLRWMMEMPGMSVPP    HPSYGSP E+P+HI+ 
Sbjct: 329 MPMWIRSVFLHYLPAMLLMKRPRKTRLRWMMEMPGMSVPPQPHTHPSYGSPTEIPKHISA 388

Query: 57  SAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRK---------ASTERR 107
               +SKMEVMELSD                   LHHPNCK+NRK         A + RR
Sbjct: 389 LGAKQSKMEVMELSD-------------------LHHPNCKMNRKLNSGDLGIGADSCRR 429

Query: 108 ESESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVT 167
           ESESSDS+LLSPEASKATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVT
Sbjct: 430 ESESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVT 489

Query: 168 TAGTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           TAGT+GILMDAPHIFEYVDQDRIIEIYRGK
Sbjct: 490 TAGTVGILMDAPHIFEYVDQDRIIEIYRGK 519

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198462958|ref|XP_001352637.2| GA10937 [Drosophila pseudoobscura pseudoobscura] gi|198151049|gb|EAL30135.2| GA10937 [Drosophila pseudoobscura pseudoobscura]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 152/208 (73%), Positives = 165/208 (79%), Gaps = 30/208 (14%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVP--PHPSYGSPAELPRHITPSA 58
           MP +IR +FLHYLP +L MKRP+KTRLRWMMEMPGMS+P  PHPSYGSPAELP+HI+   
Sbjct: 334 MPMYIRSVFLHYLPALLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIG 393

Query: 59  PSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTE---------RRES 109
             +SKMEVMELSD                   LHHPNCKINRK ++          RRES
Sbjct: 394 GKQSKMEVMELSD-------------------LHHPNCKINRKVNSGAELGLGDGCRRES 434

Query: 110 ESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTA 169
           ESSDS+LLSPEASKATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVTTA
Sbjct: 435 ESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTA 494

Query: 170 GTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           GT+GILMDAPHIFEYVDQDRIIEIYRGK
Sbjct: 495 GTVGILMDAPHIFEYVDQDRIIEIYRGK 522

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194866521|ref|XP_001971900.1| GG15229 [Drosophila erecta] gi|190653683|gb|EDV50926.1| GG15229 [Drosophila erecta]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 152/208 (73%), Positives = 164/208 (78%), Gaps = 30/208 (14%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVP--PHPSYGSPAELPRHITPSA 58
           MP +IR +FLHYLP  L MKRP+KTRLRWMMEMPGMS+P  PHPSYGSPAELP+HI+   
Sbjct: 333 MPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIG 392

Query: 59  PSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTE---------RRES 109
             +SKMEVMELSD                   LHHPNCKINRK ++          RRES
Sbjct: 393 GKQSKMEVMELSD-------------------LHHPNCKINRKVNSGGELGLGDGCRRES 433

Query: 110 ESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTA 169
           ESSDS+LLSPEASKATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVTTA
Sbjct: 434 ESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTA 493

Query: 170 GTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           GT+GILMDAPHIFEYVDQDRIIEIYRGK
Sbjct: 494 GTVGILMDAPHIFEYVDQDRIIEIYRGK 521

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170061959|ref|XP_001866461.1| acetylcholine receptor subunit beta-type unc-29 [Culex quinquefasciatus] gi|167880032|gb|EDS43415.1| acetylcholine receptor subunit beta-type unc-29 [Culex quinquefasciatus]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 152/210 (72%), Positives = 166/210 (79%), Gaps = 32/210 (15%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPP----HPSYGSPAELPRHITP 56
           MP WIR +FLHYLP +LLMKRP+KTRLRWMMEMPGMS+PP    HPSYGSPAE+P+HI+ 
Sbjct: 329 MPMWIRSVFLHYLPAMLLMKRPRKTRLRWMMEMPGMSMPPQPHTHPSYGSPAEVPKHISA 388

Query: 57  SAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRK---------ASTERR 107
               +SKM+VMELSD                   LHHPNCK+NRK         A + RR
Sbjct: 389 LGGKQSKMDVMELSD-------------------LHHPNCKMNRKMNSGDIGLGADSCRR 429

Query: 108 ESESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVT 167
           ESESSDS+LLSPEASKATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVT
Sbjct: 430 ESESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVT 489

Query: 168 TAGTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           TAGT+GILMDAPHIFEYVDQDRIIEIYRGK
Sbjct: 490 TAGTVGILMDAPHIFEYVDQDRIIEIYRGK 519

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24657653|ref|NP_523927.2| nicotinic acetylcholine receptor beta 64B, isoform A [Drosophila melanogaster] gi|1065712|emb|CAA30778.1| unnamed protein product [Drosophila melanogaster] gi|7292497|gb|AAF47900.1| nicotinic acetylcholine receptor beta 64B, isoform A [Drosophila melanogaster] gi|323301256|gb|ADX35970.1| RE35042p [Drosophila melanogaster] gi|226072|prf||1410208A nicotinic acetylcholine receptor

 Score =  298 bits (763), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 152/208 (73%), Positives = 164/208 (78%), Gaps = 30/208 (14%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVP--PHPSYGSPAELPRHITPSA 58
           MP +IR +FLHYLP  L MKRP+KTRLRWMMEMPGMS+P  PHPSYGSPAELP+HI+   
Sbjct: 333 MPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIG 392

Query: 59  PSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTE---------RRES 109
             +SKMEVMELSD                   LHHPNCKINRK ++          RRES
Sbjct: 393 GKQSKMEVMELSD-------------------LHHPNCKINRKVNSGGELGLGDGCRRES 433

Query: 110 ESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTA 169
           ESSDS+LLSPEASKATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVTTA
Sbjct: 434 ESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTA 493

Query: 170 GTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           GT+GILMDAPHIFEYVDQDRIIEIYRGK
Sbjct: 494 GTVGILMDAPHIFEYVDQDRIIEIYRGK 521

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|113060|sp|P04755.1|ACH3_DROME RecName: Full=Acetylcholine receptor subunit beta-like 1; Flags: Precursor gi|7538|emb|CAA27641.1| nicotinic AChR [Drosophila melanogaster] gi|225070|prf||1208276A acetylcholine receptor,nicotinic

 Score =  298 bits (763), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 152/208 (73%), Positives = 164/208 (78%), Gaps = 30/208 (14%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVP--PHPSYGSPAELPRHITPSA 58
           MP +IR +FLHYLP  L MKRP+KTRLRWMMEMPGMS+P  PHPSYGSPAELP+HI+   
Sbjct: 333 MPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIG 392

Query: 59  PSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTE---------RRES 109
             +SKMEVMELSD                   LHHPNCKINRK ++          RRES
Sbjct: 393 GKQSKMEVMELSD-------------------LHHPNCKINRKVNSGGELGLGDGCRRES 433

Query: 110 ESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTA 169
           ESSDS+LLSPEASKATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVTTA
Sbjct: 434 ESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTA 493

Query: 170 GTLGILMDAPHIFEYVDQDRIIEIYRGK 197
           GT+GILMDAPHIFEYVDQDRIIEIYRGK
Sbjct: 494 GTVGILMDAPHIFEYVDQDRIIEIYRGK 521

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
FB|FBgn0000038	521	nAcRbeta-64B "nicotinic Acetyl	0.934	0.353	0.693	1.3e-66
WB|WBGene00006765	493	unc-29 [Caenorhabditis elegans	0.538	0.215	0.385	2.5e-24
WB|WBGene00000042	575	acr-2 [Caenorhabditis elegans	0.994	0.340	0.336	6.8e-23
WB|WBGene00000043	487	acr-3 [Caenorhabditis elegans	0.355	0.143	0.542	2.8e-22
UNIPROTKB|F1MC93	495	CHRNB4 "Neuronal acetylcholine	0.299	0.119	0.475	2.7e-19
UNIPROTKB|Q8SPU6	496	CHRNB4 "Neuronal acetylcholine	0.299	0.118	0.475	5.6e-19
UNIPROTKB|F1RKU7	495	CHRNB4 "Uncharacterized protei	0.299	0.119	0.491	1e-18
UNIPROTKB|P30926	498	CHRNB4 "Neuronal acetylcholine	0.299	0.118	0.459	6.2e-18
ZFIN|ZDB-GENE-040108-2	520	chrna2a "cholinergic receptor,	0.274	0.103	0.518	6.9e-18
UNIPROTKB|P09484	491	CHRNB2 "Neuronal acetylcholine	0.365	0.146	0.459	9e-18

FB|FBgn0000038 nAcRbeta-64B "nicotinic Acetylcholine Receptor beta 64B" [Drosophila melanogaster (taxid:7227)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 140/202 (69%), Positives = 153/202 (75%)

Query:     1 MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVP--PHPSYGSPAELPRHITPSA 58
             MP +IR +FLHYLP  L MKRP+KTRLRWMMEMPGMS+P  PHPSYGSPAELP+HI+   
Sbjct:   333 MPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIG 392

Query:    59 PSKSKMEVMELSDLHHPNCKINRKARV---MELSDLHHPNCKINRKAXXXXXXXXXXXXX 115
               +SKMEVMELSDLHHPNCKINRK      + L D     C+  R++             
Sbjct:   393 GKQSKMEVMELSDLHHPNCKINRKVNSGGELGLGD----GCR--RESESSDSILLSPEAS 446

Query:   116 XXXXXXXKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGIL 175
                    KATEAVEFIAEHLR+ED YIQ REDWKYVAMVIDRLQLYIFFIVTTAGT+GIL
Sbjct:   447 -------KATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGIL 499

Query:   176 MDAPHIFEYVDQDRIIEIYRGK 197
             MDAPHIFEYVDQDRIIEIYRGK
Sbjct:   500 MDAPHIFEYVDQDRIIEIYRGK 521

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IDA

WB|WBGene00006765 unc-29 [Caenorhabditis elegans (taxid:6239)]

 Score = 224 (83.9 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
 Identities = 42/109 (38%), Positives = 62/109 (56%)

Query:    92 HHPNCKI--NRKAXXXXXXXXXXXXXX-XXXXXXKATEAVEFIAEHLRSEDQYIQIREDW 148
             HHP C    +R                       +A +A+E+I EHL+ ++Q+   R+DW
Sbjct:   377 HHPLCPSADDRTTTIRNTASNETSAYYPLSTDALRAIDAIEYITEHLKRDEQHKSFRDDW 436

Query:   149 KYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQDRIIEIYRGK 197
             KYVAM+IDRL LY+FF +T  GT GIL  APH+F+ +DQ  +++  + K
Sbjct:   437 KYVAMIIDRLLLYVFFGITVGGTCGILFSAPHVFQRIDQQEMLDRLKEK 485

GO:0045211 "postsynaptic membrane" evidence=IEA;IDA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0046662 "regulation of oviposition" evidence=IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IDA

GO:0043051 "regulation of pharyngeal pumping" evidence=IGI

GO:0045202 "synapse" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0015464 "acetylcholine receptor activity" evidence=IDA

WB|WBGene00000042 acr-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 272 (100.8 bits), Expect = 6.8e-23, P = 6.8e-23
 Identities = 70/208 (33%), Positives = 106/208 (50%)

Query:     1 MPPWIRGMFLHYLPIVLLMKRPKKTRL--RWMMEMPGMSVPPHPSYGSPAE----LP-RH 53
             MP W+R +FL +LP +L+MKRP++  +   + +E    S     S   P+     LP   
Sbjct:   361 MPTWVRKVFLEFLPHLLVMKRPERIPIFNGYFVEEYCASEIFDASLVMPSMTATMLPFLQ 420

Query:    54 ITPSAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKAXXXXXXXXXXX 113
             +T +  + S     + S+ HH NC   +K   + +S    P  +++  +           
Sbjct:   421 VTTNLKAASSTSSGQSSE-HHENCSKWKKRLSIRMSKRRAPRARLDDDSEDIIDDTNGNH 479

Query:   114 XXXXXXXXXK----ATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTA 169
                      K      EA+ +IAEH++ E    ++R+DWKYVAMV+DRL L IFF VT  
Sbjct:   480 VDSLQEKISKEMKTTVEAIAYIAEHMKREMSLKKMRDDWKYVAMVLDRLILLIFFGVTLG 539

Query:   170 GTLGILMDAPHIFEYVDQDRIIEIYRGK 197
             GTLGI+  APH+F++VDQ+ II     K
Sbjct:   540 GTLGIICSAPHVFDFVDQEAIISKLNAK 567

GO:0006811 "ion transport" evidence=IEA;IDA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA;IDA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IMP

GO:0043005 "neuron projection" evidence=IDA

GO:0015464 "acetylcholine receptor activity" evidence=ISS

WB|WBGene00000043 acr-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 210 (79.0 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
 Identities = 38/70 (54%), Positives = 55/70 (78%)

Query:   123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIF 182
             KA EA+E+I  HL  ++ + + RE+WK+V++VIDRL LY+FF VTT GT+GIL+ AP++F
Sbjct:   405 KAIEAIEYITTHLTHDNAFKRQREEWKFVSVVIDRLLLYLFFAVTTGGTVGILLSAPNVF 464

Query:   183 EYVDQDRIIE 192
             E V+Q  +IE
Sbjct:   465 EQVNQTSVIE 474

GO:0006811 "ion transport" evidence=IEA;IDA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA;IDA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015464 "acetylcholine receptor activity" evidence=IDA

UNIPROTKB|F1MC93 CHRNB4 "Neuronal acetylcholine receptor subunit beta-4" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query:   123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIF 182
             +A E V FIA+H++S+D    + EDWKYVAMV+DRL L++F +V   GT+G+ +  P +F
Sbjct:   429 EALEGVSFIAQHMKSDDLDQSVIEDWKYVAMVVDRLFLWVFVVVCVLGTVGLFL--PPLF 486

Query:   183 E 183
             +
Sbjct:   487 Q 487

GO:0060084 "synaptic transmission involved in micturition" evidence=IEA

GO:0035095 "behavioral response to nicotine" evidence=IEA

GO:0015464 "acetylcholine receptor activity" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0006940 "regulation of smooth muscle contraction" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IEA

GO:0001508 "regulation of action potential" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

UNIPROTKB|Q8SPU6 CHRNB4 "Neuronal acetylcholine receptor subunit beta-4" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 5.6e-19, Sum P(3) = 5.6e-19
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query:   123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIF 182
             +A E V FIA+H++S+D    + EDWKYVAMV+DRL L++F +V   GT+G+ +  P +F
Sbjct:   430 EALEGVSFIAQHMKSDDLDQSVIEDWKYVAMVVDRLFLWVFVVVCVLGTVGLFL--PPLF 487

Query:   183 E 183
             +
Sbjct:   488 Q 488

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

UNIPROTKB|F1RKU7 CHRNB4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 163 (62.4 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query:   123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIF 182
             +A E V FIA+H++S+DQ   + EDWKYVAMV+DRL L++F +V   GT+G+ +  P +F
Sbjct:   429 EALEGVSFIAQHMKSDDQDQSVIEDWKYVAMVVDRLFLWVFVVVCVLGTVGLFL--PPLF 486

Query:   183 E 183
             +
Sbjct:   487 Q 487

GO:0060084 "synaptic transmission involved in micturition" evidence=IEA

GO:0035095 "behavioral response to nicotine" evidence=IEA

GO:0015464 "acetylcholine receptor activity" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0006940 "regulation of smooth muscle contraction" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IEA

GO:0001508 "regulation of action potential" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

UNIPROTKB|P30926 CHRNB4 "Neuronal acetylcholine receptor subunit beta-4" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 6.2e-18, Sum P(3) = 6.2e-18
 Identities = 28/61 (45%), Positives = 44/61 (72%)

Query:   123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIF 182
             +A E V FIA+H++++D+   + EDWKYVAMV+DRL L++F  V   GT+G+ +  P +F
Sbjct:   426 EALEGVSFIAQHMKNDDEDQSVVEDWKYVAMVVDRLFLWVFMFVCVLGTVGLFL--PPLF 483

Query:   183 E 183
             +
Sbjct:   484 Q 484

GO:0030054 "cell junction" evidence=IEA

GO:0001508 "regulation of action potential" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IEA

GO:0006940 "regulation of smooth muscle contraction" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0035095 "behavioral response to nicotine" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=TAS

GO:0015276 "ligand-gated ion channel activity" evidence=TAS

GO:0005892 "acetylcholine-gated channel complex" evidence=IDA;TAS

GO:0006811 "ion transport" evidence=TAS

GO:0007165 "signal transduction" evidence=IDA

GO:0015464 "acetylcholine receptor activity" evidence=IDA

GO:0046928 "regulation of neurotransmitter secretion" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0016021 "integral to membrane" evidence=NAS

GO:0060084 "synaptic transmission involved in micturition" evidence=IMP

GO:0007271 "synaptic transmission, cholinergic" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

ZFIN|ZDB-GENE-040108-2 chrna2a "cholinergic receptor, nicotinic, alpha polypeptide 2a (neuronal)" [Danio rerio (taxid:7955)]

 Score = 163 (62.4 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
 Identities = 28/54 (51%), Positives = 42/54 (77%)

Query:   123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILM 176
             +A E V +IA+HL++ED+   ++EDWKYVAMVIDR+ L++F IV   GT+G+ +
Sbjct:   459 RALEGVRYIADHLKAEDEDFSVKEDWKYVAMVIDRIFLWMFIIVCLLGTIGLFL 512

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005892 "acetylcholine-gated channel complex" evidence=IDA

GO:0015464 "acetylcholine receptor activity" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|P09484 CHRNB2 "Neuronal acetylcholine receptor subunit beta-2" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 9.0e-18, Sum P(2) = 9.0e-18
 Identities = 34/74 (45%), Positives = 50/74 (67%)

Query:   123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIF 182
             +A E V FIA+H+RSED    + EDWKYVAMVIDRL L+IF  V   GT+G+ +  P +F
Sbjct:   415 EAVEGVRFIADHMRSEDDDQSVSEDWKYVAMVIDRLFLWIFVFVCVFGTVGMFLQ-P-LF 472

Query:   183 EYVDQDRIIEIYRG 196
             +    + ++++ +G
Sbjct:   473 QNYATNSLLQLGQG 486

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P04755	ACH3_DROME	No assigned EC number	0.7307	0.9035	0.3416	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	197
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	3e-27
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	1e-05

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score =  102 bits (257), Expect = 3e-27
 Identities = 56/174 (32%), Positives = 69/174 (39%), Gaps = 38/174 (21%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP W+R +FL  LP +L MKRP ++           S     S   PA            
Sbjct: 92  MPEWVRKLFLRKLPRLLFMKRPPESLSPPAAPNLRRSSSSSGSVLEPA------------ 139

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
                            + +        S L  P                      LSPE
Sbjct: 140 ------SGKESKGVGGPETSSGLPGGSGSGLGSPFR--------------------LSPE 173

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGI 174
             KA E V FIAEHLRS D++ +++EDWKYVAMVIDRL  +IF I    GTL  
Sbjct: 174 LKKALEGVRFIAEHLRSRDEFDEVKEDWKYVAMVIDRLSRWIFPIAFVLGTLVY 227

This family includes the four transmembrane helices that form the ion channel. Length = 228

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 10/137 (7%)

Query: 43  SYGSPAELPRHITPSAPSKSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINR-- 100
            +  PA+  RH+     +    +     D   P            LS +        R  
Sbjct: 328 HHKDPAQGKRHLLLERCAWRLCKQEPGEDYRRPALDH------ASLSSVEMRAKDGGRGL 381

Query: 101 -KASTERRESESSDSLLLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQ 159
              +  +R   S        + +   E V       R  D+  ++  DWK+ A VID+L 
Sbjct: 382 ESPTERQRLLHSPPPAEGDLDLAGILEEVRIA-HRFRKRDESEEVVRDWKFRAKVIDKLS 440

Query: 160 LYIFFIVTTAGTLGILM 176
              F +      +G  M
Sbjct: 441 RMAFPLAFLLFNIGYWM 457

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG3646|consensus	486		99.79
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	99.71
TIGR00860	459	LIC Cation transporter family protein. selective w	99.55
KOG3645|consensus	449		99.14

>KOG3646|consensus

Probab=99.79  E-value=5.2e-19  Score=156.42  Aligned_cols=62  Identities=32%  Similarity=0.599  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccc
Q psy11698        119 PEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIF  182 (197)
Q Consensus       119 ~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~  182 (197)
                      .++..+++.+++|.++++++++++++++||||+|||+||+||++|+++.+++  +|++.+|++.
T Consensus       424 ~~~~~i~~~~~~~~~r~~~~~~~~~~~~dWkFAAmvVDRlCL~~Fs~fiii~--~i~~~~p~l~  485 (486)
T KOG3646|consen  424 KELHLILKELRAILDRMEEDDKEEALQSDWKFAAMVVDRLCLLAFSVFIVMC--GILLSAPHLV  485 (486)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--HHhhcCCccC
Confidence            5788899999999999999999999999999999999999999999999888  8899999875

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.71  E-value=8.6e-18  Score=132.61  Aligned_cols=60  Identities=45%  Similarity=0.643  Sum_probs=52.4

Q ss_pred             cCcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy11698        116 LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGIL  175 (197)
Q Consensus       116 ~~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~  175 (197)
                      ...+.++++.+++++|++|++++++.+++++||+++|+||||+|+|+|.+++++++++++
T Consensus       178 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ew~~~A~viDR~~~~~F~i~f~~~~i~yw  237 (237)
T PF02932_consen  178 SLSPSLRRILEGVRFIAEHLREQDEEEEIKEEWKFVAMVIDRLFRILFPIAFILFNIVYW  237 (237)
T ss_dssp             TGGG----HHHHHHHHHHHHHHHHHHHHHHHHHHSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHhhhhcccceeecccccccccccccccccccHHHHHHHHHHHHHHHHHHHHhhhC
Confidence            345788999999999999999999999999999999999999999999999999999874

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>TIGR00860 LIC Cation transporter family protein

Probab=99.55  E-value=8.6e-15  Score=132.86  Aligned_cols=60  Identities=25%  Similarity=0.365  Sum_probs=56.5

Q ss_pred             CcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy11698        117 LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMD  177 (197)
Q Consensus       117 ~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~  177 (197)
                      ..++++++++++++| +|++++++.+++.+|||+||+|+||+|||+|.++++++|+++++.
T Consensus       399 ~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~W~~~a~viDr~~~~~f~~~~~~~~~~~~~~  458 (459)
T TIGR00860       399 GDLDLAGILEEVRIA-HRFRKRDESEEVVRDWKFRAKVIDKLSRMAFPLAFLLFNIGYWMS  458 (459)
T ss_pred             cCHHHHHHHhhhhHH-HHHHhhhhhhcccchhhhccchhhHHHHHHHHHHHHHhhhhheEe
Confidence            347999999999999 999999999999999999999999999999999999999998763

selective while glycine receptors are anion selective).

>KOG3645|consensus

Probab=99.14  E-value=1.4e-10  Score=105.28  Aligned_cols=48  Identities=71%  Similarity=1.168  Sum_probs=45.9

Q ss_pred             CcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHH
Q psy11698        117 LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFF  164 (197)
Q Consensus       117 ~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~  164 (197)
                      ..++++++.++++||++|++.++..++..+||++||+|+||+|||+|+
T Consensus       401 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~w~~va~v~dr~~l~~f~  448 (449)
T KOG3645|consen  401 LSPELRKAIEGVDFIAEHLKSEDNFQEIREDWKYVAMVLDRLLLWIFL  448 (449)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHhhheEe
Confidence            668999999999999999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
1oed_B	250	Structure Of Acetylcholine Receptor Pore From Elect		4e-13
2bg9_B	370	Refined Structure Of The Nicotinic Acetylcholine Re		8e-12
4aq5_B	493	Gating Movement In Acetylcholine Receptor Analysed		8e-12
1oed_A	227	Structure Of Acetylcholine Receptor Pore From Elect		5e-08
4aq5_A	461	Gating Movement In Acetylcholine Receptor Analysed		5e-08
2bg9_A	370	Refined Structure Of The Nicotinic Acetylcholine Re		5e-08

>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 250

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 43/58 (74%)
Query: 123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
           +A EA+++IAE L S  ++  +++DW+YVAMV DRL LY+FF++ + GT  I +DA H
Sbjct: 187 EAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASH 244

>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
           +A EA+++IAE L S  ++  +++DW+YVAMV DRL LYIF  + + GT  I +DA H
Sbjct: 304 EAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASH 361

>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
           +A EA+++IAE L S  ++  +++DW+YVAMV DRL LYIF  + + GT  I +DA H
Sbjct: 427 EAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASH 484

>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 227

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGIL 175
            A E V++IAEH++S+++     E+WKYVAMVID + L +F ++   GT+ + 
Sbjct: 164 SAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVF 216

>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGIL 175
            A E V++IAEH++S+++     E+WKYVAMVID + L +F ++   GT+ + 
Sbjct: 398 SAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVF 450

>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGIL 175
            A E V++IAEH++S+++     E+WKYVAMVID + L +F ++   GT+ + 
Sbjct: 307 SAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVF 359

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	6e-27
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	4e-26
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	1e-25
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	1e-24
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	2e-22
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	2e-21
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	3e-16
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	1e-15
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	9e-15
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	7e-14
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	7e-13
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	2e-11

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score =  105 bits (263), Expect = 6e-27
 Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 23/180 (12%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           +   ++ +FL  LP +L M R  +           +       Y S A+   +I   +  
Sbjct: 343 LSTRVKQIFLEKLPRILHMSRVDEIEQPDWQNDLKLRRSSSVGYISKAQEYFNIKSRSEL 402

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
             + +                       S+ H    ++  +          + S  L  E
Sbjct: 403 MFEKQ-----------------------SERHGLVPRVTPRIGFGNNNENIAASDQLHDE 439

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
                ++  +I + ++ ++ Y +   +W  V   IDRL ++I   V   GT+ I +    
Sbjct: 440 IKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNF 499

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score =  103 bits (257), Expect = 4e-26
 Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 24/180 (13%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           +   I+ +FL +LP  L M                          +P +       S   
Sbjct: 316 LSEKIKHLFLEFLPKYLGMHLEPSEE-------------------TPEKPQPRRRSSFGI 356

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
             K E   L           +K R            K+              D    +PE
Sbjct: 357 MIKAEEYILKKPRSELMFEEQKDR-----HGLKRVNKMTSDIDIGTTVDLYKDLANFAPE 411

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
                EA  FIA+  + ++      E+W  +  VID+   +I  ++ + GTL I +    
Sbjct: 412 IKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHL 471

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score =  102 bits (254), Expect = 1e-25
 Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 33/180 (18%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP WIR +F+  LP  L ++RP  T                              P+  S
Sbjct: 338 MPNWIRQIFIETLPPFLWIQRPVTTP------------------------SPDSKPTIIS 373

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
           ++  E           C ++                     +  +   +  +  + L  +
Sbjct: 374 RANDEYFIRKPAGDFVCPVDNA---------RVAVQPERLFSEMKWHLNGLTQPVTLPQD 424

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
             +A EA+++IAE L S  ++  +++DW+YVAMV DRL LYIF  + + GT  I +DA H
Sbjct: 425 LKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASH 484

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260

 Score = 96.1 bits (238), Expect = 1e-24
 Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 23/180 (12%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           +   ++ +FL  LP +L M R  ++          +       Y S A+           
Sbjct: 98  LSTRVKQIFLEKLPRILHMSRADESEQPDWQNDLKLRRSSSVGYISKAQ----------- 146

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
                        + N K   +    + S+ H    ++  +          + S  L  E
Sbjct: 147 ------------EYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNNENIAASDQLHDE 194

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
                ++  +I + ++ ++ Y +   +W  V   IDRL ++I   V   GT+ I +    
Sbjct: 195 IKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNF 254

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260

 Score = 90.0 bits (222), Expect = 2e-22
 Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 24/180 (13%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           +   I+ +FL +LP  L M+           +    S                   S   
Sbjct: 99  LSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPRRRS-------------------SFGI 139

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
             K E   L           +K R            K+              D    +PE
Sbjct: 140 MIKAEEYILKKPRSELMFEEQKDR-----HGLKRVNKMTSDIDIGTTVDLYKDLANFAPE 194

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
                EA  FIA+  + ++      E+W  +  VID+   +I  ++ + GTL I +    
Sbjct: 195 IKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTGHF 254

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250

 Score = 87.3 bits (215), Expect = 2e-21
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 33/181 (18%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP WIR +F+  LP  L ++RP  T                              P+  S
Sbjct: 98  MPNWIRQIFIETLPPFLWIQRPVTTPSPDSK------------------------PTIIS 133

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
           ++  E           C ++                     +  +   +  +  + L  +
Sbjct: 134 RANDEYFIRKPAGDFVCPVDNA---------RVAVQPERLFSEMKWHLNGLTQPVTLPQD 184

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
             +A EA+++IAE L S  ++  +++DW+YVAMV DRL LY+FF++ + GT  I +DA H
Sbjct: 185 LKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASH 244

Query: 181 I 181
            
Sbjct: 245 N 245

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 75.0 bits (184), Expect = 3e-16
 Identities = 34/178 (19%), Positives = 59/178 (33%), Gaps = 56/178 (31%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP W+R +F++ +P V+     K+                                    
Sbjct: 332 MPQWVRKIFINTIPNVMFFSTMKRASKEKQENK--------------------------- 364

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
                   +         I+ K    E+          + K                   
Sbjct: 365 --------IFADDIDISDISGKQVTGEVIFQTPLIKNPDVK------------------- 397

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDA 178
              A E V++IAEH++S+++     E+WKYVAMVID + L +F ++   GT+ +    
Sbjct: 398 --SAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 453

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 73.0 bits (179), Expect = 1e-15
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query: 118 SPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMD 177
           SP   +A EA+++IAE L S  ++  +++DW+YVAMV DRL LYIF  + + GT  I +D
Sbjct: 299 SPNTHEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLD 358

Query: 178 APH 180
           A H
Sbjct: 359 ASH 361

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227

 Score = 69.1 bits (168), Expect = 9e-15
 Identities = 28/178 (15%), Positives = 55/178 (30%), Gaps = 56/178 (31%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP W+R +F+  +P V+     K+                                    
Sbjct: 98  MPQWVRKIFIDTIPNVMFFSTMKRASKEKQENKIFADDIDISDISG-------------- 143

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
                            ++  +  +++  D+      +                      
Sbjct: 144 ------------KQVTGEVIFQTPLIKNPDVKSAIEGVK--------------------- 170

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDA 178
                    +IAEH++S+++     E+WKYVAMVID + L +F ++   GT+ +    
Sbjct: 171 ---------YIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 219

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 68.0 bits (166), Expect = 7e-14
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 128 VEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQ 187
           V++IAEH++S+++     E+WKYVAMVID + L +F ++   GT+ +      + E   +
Sbjct: 312 VKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR--LIELSQE 369

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 64.9 bits (158), Expect = 7e-13
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 128 VEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
             FIA+  + ++      E+W  +  VID+   +I  ++ + GTL I +    
Sbjct: 313 CNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHL 365

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 60.7 bits (147), Expect = 2e-11
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 128 VEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
             +I + ++ ++ Y +   +W  V   IDRL ++I   V   GT+ I +    
Sbjct: 311 TNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNF 363

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	99.94
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	99.93
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	99.93
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.93
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.92
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.91
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	99.91
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.89
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.4
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.36
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.32
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.11
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	98.47
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	97.87

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B

Probab=99.94  E-value=1.9e-28  Score=204.59  Aligned_cols=68  Identities=43%  Similarity=0.824  Sum_probs=32.0

Q ss_pred             CcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccc
Q psy11698        117 LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEY  184 (197)
Q Consensus       117 ~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~  184 (197)
                      .++++++++++|+||++|++++|+++++++||||||||+||+|||+|++++++||++||++||++|+.
T Consensus       181 ~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~~  248 (250)
T 1oed_B          181 LPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASHNVPP  248 (250)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999875

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A

Probab=99.93  E-value=3.3e-28  Score=204.26  Aligned_cols=70  Identities=21%  Similarity=0.390  Sum_probs=32.4

Q ss_pred             cCcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCccccccc
Q psy11698        116 LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYV  185 (197)
Q Consensus       116 ~~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~  185 (197)
                      ..++++++++++|+||++|++++|+++++++||||||||+||+|||+|++++++||++||++||++|+++
T Consensus       190 ~~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~~~  259 (260)
T 1oed_C          190 QLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNHPPA  259 (260)
T ss_dssp             ------------------------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence            3557999999999999999999999999999999999999999999999999999999999999998764

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1

Probab=99.93  E-value=5.6e-28  Score=202.82  Aligned_cols=69  Identities=25%  Similarity=0.417  Sum_probs=31.7

Q ss_pred             cCcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccc
Q psy11698        116 LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEY  184 (197)
Q Consensus       116 ~~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~  184 (197)
                      ..++++++++++|+||++|++++|+++++++||||||||+||+|||+|++++++||++||++||+++++
T Consensus       190 ~~~~~l~~~~~~v~~Ia~~~~~~d~~~~~~~dWk~vAmVlDRlfL~iF~i~~i~gT~~I~l~ap~~~~~  258 (260)
T 1oed_E          190 NFAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTGHFNQVP  258 (260)
T ss_dssp             ------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence            355789999999999999999999999999999999999999999999999999999999999999864

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.93  E-value=3.3e-27  Score=213.84  Aligned_cols=71  Identities=24%  Similarity=0.379  Sum_probs=59.8

Q ss_pred             CcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccccch
Q psy11698        117 LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQ  187 (197)
Q Consensus       117 ~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~~~  187 (197)
                      +.+++++|+++|+|||+|+|++|+++++.+||||||||+||+|||+|+++|++||++||++|+..+....|
T Consensus       408 ~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~dWk~va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~~~~~~p  478 (488)
T 4aq5_E          408 FAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQVPEFP  478 (488)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred             cCHHHHHHHHHHHHHHHHHhhhhHHhhhhhcceEEEeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Confidence            56899999999999999999999999999999999999999999999999999999999998887766553

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.92  E-value=5.8e-27  Score=213.81  Aligned_cols=72  Identities=21%  Similarity=0.366  Sum_probs=61.7

Q ss_pred             cCcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccccch
Q psy11698        116 LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQ  187 (197)
Q Consensus       116 ~~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~~~  187 (197)
                      .+.+++++++++|+|||+|+|++|+++++++||||||||+||+|||+|+++|++||++||++++..+....|
T Consensus       435 ~~~~~~~~~~~~v~~ia~~~~~~~~~~~~~~dWk~va~V~DRl~l~~f~~~~~~gt~~i~~~~~~~~~~~~p  506 (522)
T 4aq5_C          435 QLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPAKP  506 (522)
T ss_dssp             -------CCTTTTTHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCC-
T ss_pred             ccCHHHHHHHHHHHHHHHHHhhhhhhhhhccceeEeeeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Confidence            356899999999999999999999999999999999999999999999999999999999999888776654

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.91  E-value=4.5e-26  Score=206.69  Aligned_cols=70  Identities=41%  Similarity=0.732  Sum_probs=59.9

Q ss_pred             cCcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCccccccc
Q psy11698        116 LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYV  185 (197)
Q Consensus       116 ~~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~  185 (197)
                      ...+++++++++|+|||+|++++++++++.+||||||||+||+|||+|+++|++||++||+++|..+...
T Consensus       420 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~~~~~  489 (493)
T 4aq5_B          420 TLPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPD  489 (493)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSSSS
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhhhHhhhhhcceEEEEEehhHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Confidence            4568999999999999999999999999999999999999999999999999999999999988766544

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B

Probab=99.91  E-value=7.9e-26  Score=186.37  Aligned_cols=60  Identities=38%  Similarity=0.800  Sum_probs=25.6

Q ss_pred             cHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy11698        118 SPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMD  177 (197)
Q Consensus       118 ~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~  177 (197)
                      ++++++++++++||++|++++|+++++++||||||||+||+|||+|++++++||++||++
T Consensus       159 ~~~l~~~~~~v~~I~~~~~~~~~~~~~~~dWk~vA~VlDRl~l~iF~~~~i~gT~~i~~~  218 (227)
T 1oed_A          159 NPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAG  218 (227)
T ss_dssp             ----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999999999999999999999999998

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.89  E-value=6.5e-25  Score=197.58  Aligned_cols=64  Identities=36%  Similarity=0.713  Sum_probs=56.1

Q ss_pred             CcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcc
Q psy11698        117 LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH  180 (197)
Q Consensus       117 ~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~  180 (197)
                      ..+++++++++++|||+|++++++++++.+||||||||+||+|||+|+++|++||++||++++.
T Consensus       392 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~dWk~va~v~Dr~~l~~f~~~~~~gt~~i~~~~~~  455 (461)
T 4aq5_A          392 KNPDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGRLI  455 (461)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhhHHHHhhhhhheeeeeeHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999999999999999999999999999999999998643

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.40  E-value=1.1e-13  Score=121.18  Aligned_cols=64  Identities=44%  Similarity=0.781  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccccch
Q psy11698        124 ATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYVDQ  187 (197)
Q Consensus       124 ~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~~~  187 (197)
                      +++++++|++|+++++++++.++||++||+|+||+|||+|++++++||++||++||++++...|
T Consensus       305 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~v~Dr~~~~~f~~~~~~~t~~i~~~~~~~~~~~~~  368 (370)
T 2bg9_B          305 AVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNP  368 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCC
T ss_pred             chhhHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCC
Confidence            6788999999999999999999999999999999999999999999999999999999987653

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.36  E-value=2.9e-13  Score=118.31  Aligned_cols=62  Identities=21%  Similarity=0.399  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCccccccc
Q psy11698        124 ATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEYV  185 (197)
Q Consensus       124 ~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~~  185 (197)
                      +++++++|+++++++++.++.++||+++|+|+||+|||+|++++++||++||++||++++.+
T Consensus       307 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~~~~i~~~~~~~~~~~  368 (369)
T 2bg9_C          307 GIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPA  368 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence            57889999999999999999999999999999999999999999999999999999998764

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.32  E-value=8.4e-13  Score=115.39  Aligned_cols=61  Identities=25%  Similarity=0.402  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccccc
Q psy11698        124 ATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFEY  184 (197)
Q Consensus       124 ~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~~  184 (197)
                      +++++++|++|++++++.++.++||+++|+|+||+|||+|++++++||++||++||++++.
T Consensus       309 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~~~~~~~~  369 (370)
T 2bg9_E          309 CVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQVP  369 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             chhhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence            6778999999999999999999999999999999999999999999999999999998764

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.11  E-value=1.8e-11  Score=106.97  Aligned_cols=55  Identities=40%  Similarity=0.803  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy11698        123 KATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMD  177 (197)
Q Consensus       123 ~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~  177 (197)
                      ++++++++|+++++++++.++.++||+++|+|+||+|||+|.+++++||++||++
T Consensus       307 ~~~~~~~~i~~~~~~~~~~~~~~~~W~~~a~vlDr~~~~~f~~~~~~~t~~i~~~  361 (370)
T 2bg9_A          307 SAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAG  361 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4678899999999999999999999999999999999999999999999999986

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=98.47  E-value=5.1e-08  Score=76.20  Aligned_cols=35  Identities=49%  Similarity=0.795  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCccccc
Q psy11698        148 WKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIFE  183 (197)
Q Consensus       148 Wk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~  183 (197)
                      +|+||+|+||+|||+|.+++++||++|+++ |.+++
T Consensus       129 ~k~~a~v~Dr~~l~~f~~~~~~~t~~i~~~-p~~~~  163 (164)
T 2ksr_A          129 GGYVAMVIDRLFLWIFVFVCVFGTIGMFLQ-PLFQN  163 (164)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHHHHHHHHHHT-TTSCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHheec-ccccc
Confidence            499999999999999999999999999999 88875

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=97.87  E-value=6.3e-06  Score=62.38  Aligned_cols=31  Identities=35%  Similarity=0.658  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhhcCccccc
Q psy11698        152 AMVIDRLQLYIFFIVTTAGTLGILMDAPHIFE  183 (197)
Q Consensus       152 A~VlDRlfl~if~~~~~~~t~~i~~~~p~~~~  183 (197)
                      ++|+||+|||+|.+++++||++|+++ |+.+|
T Consensus       106 ~~~~dr~~lwif~~~~~~gt~~i~~~-p~~~~  136 (137)
T 2lly_A          106 GGGIDRIFLWMFIIVCLLGTVGLFLP-PWLAG  136 (137)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHCC-STTTC
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhheec-ccccC
Confidence            48999999999999999999999999 98876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	3e-27
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	2e-26
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	4e-23
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	1e-14

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score =  101 bits (253), Expect = 3e-27
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 23/178 (12%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           +   ++ +FL  LP +L M R  ++          +       Y S A+           
Sbjct: 98  LSTRVKQIFLEKLPRILHMSRADESEQPDWQNDLKLRRSSSVGYISKAQ----------- 146

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
                        + N K   +    + S+ H    ++  +          + S  L  E
Sbjct: 147 ------------EYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNNENIAASDQLHDE 194

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDA 178
                ++  +I + ++ ++ Y +   +W  V   IDRL ++I   V   GT+ I +  
Sbjct: 195 IKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMG 252

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 99.5 bits (247), Expect = 2e-26
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 33/180 (18%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP WIR +F+  LP  L ++RP  T                              P+  S
Sbjct: 98  MPNWIRQIFIETLPPFLWIQRPVTTP------------------------SPDSKPTIIS 133

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
           ++  E           C ++     ++   L             +   +  +  + L  +
Sbjct: 134 RANDEYFIRKPAGDFVCPVDNARVAVQPERLFS---------EMKWHLNGLTQPVTLPQD 184

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
             +A EA+++IAE L S  ++  +++DW+YVAMV DRL LY+FF++ + GT  I +DA H
Sbjct: 185 LKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASH 244

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 91.0 bits (225), Expect = 4e-23
 Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 24/180 (13%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           +   I+ +FL +LP  L M+           E P    P   S               P 
Sbjct: 99  LSEKIKHLFLGFLPKYLGMQLEP------SEETPEKPQPRRRSSFGIMIKAEEYILKKPR 152

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
            S++   E  D H                       K+              D    +PE
Sbjct: 153 -SELMFEEQKDRHGL-----------------KRVNKMTSDIDIGTTVDLYKDLANFAPE 194

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPH 180
                EA  FIA+  + ++      E+W  +  VID+   +I  ++ + GTL I +    
Sbjct: 195 IKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTGHF 254

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 67.4 bits (164), Expect = 1e-14
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 56/175 (32%)

Query: 1   MPPWIRGMFLHYLPIVLLMKRPKKTRLRWMMEMPGMSVPPHPSYGSPAELPRHITPSAPS 60
           MP W+R +F+  +P V+     K+                                   +
Sbjct: 98  MPQWVRKIFIDTIPNVMFFSTMKRAS----------------------------KEKQEN 129

Query: 61  KSKMEVMELSDLHHPNCKINRKARVMELSDLHHPNCKINRKASTERRESESSDSLLLSPE 120
           K   + +++SD+                                   E      L+ +P+
Sbjct: 130 KIFADDIDISDISGKQ----------------------------VTGEVIFQTPLIKNPD 161

Query: 121 ASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGIL 175
              A E V++IAEH++S+++     E+WKYVAMVID + L +F ++   GT+ + 
Sbjct: 162 VKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVF 216

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d1oedb_	250	Acetylcholine receptor protein, beta chain {Marble	99.86
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	99.84
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	99.74
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	99.55

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.86  E-value=1.3e-23  Score=172.01  Aligned_cols=66  Identities=44%  Similarity=0.867  Sum_probs=29.8

Q ss_pred             CcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCcccc
Q psy11698        117 LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDAPHIF  182 (197)
Q Consensus       117 ~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~p~~~  182 (197)
                      ...+++++.+++++|+++++++++++++++||++||+|+||+|||+|+++++++|++||++||+.+
T Consensus       181 ~~~~~~~i~~~v~~i~~~~~~~~~~~~~~~EW~~vA~VlDRlfl~lF~l~~vi~t~~i~l~ap~~~  246 (250)
T d1oedb_         181 LPQDLKEAVEAIKYIAEQLESASEFDDLKKDWQYVAMVADRLFLYVFFVICSIGTFSIFLDASHNV  246 (250)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence            345789999999999999999999999999999999999999999999999999999999999875

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.84  E-value=8.5e-23  Score=167.55  Aligned_cols=63  Identities=24%  Similarity=0.472  Sum_probs=26.0

Q ss_pred             cCcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q psy11698        116 LLSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDA  178 (197)
Q Consensus       116 ~~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~  178 (197)
                      .+.++++++.+++++|+++++++++.+++++|||+||+|+||+|||+|+++++++|+++|+++
T Consensus       190 ~~~~~l~~~~~~v~~i~~~~~~~~~~~~~~~EWk~vA~ViDRlfl~lF~i~~vi~ti~ifl~~  252 (260)
T d1oedc_         190 QLHDEIKSGIDSTNYIVKQIKEKNAYDEEVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMG  252 (260)
T ss_dssp             ------------------------------------CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            356788999999999999999999999999999999999999999999999999999999985

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.74  E-value=8.8e-20  Score=149.73  Aligned_cols=62  Identities=27%  Similarity=0.543  Sum_probs=26.0

Q ss_pred             CcHHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcC
Q psy11698        117 LSPEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMDA  178 (197)
Q Consensus       117 ~~~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~~  178 (197)
                      ..++++++.+++++|+++++++++++++++||++||+|+||+|||+|.++++++|++||+++
T Consensus       191 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~eW~~vA~viDR~~l~vF~~~~~i~t~~i~l~~  252 (260)
T d1oede_         191 FAPEIKSCVEACNFIAKSTKEQNDSGSENENWVLIGKVIDKACFWIALLLFSIGTLAIFLTG  252 (260)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45678999999999999999999999999999999999999999999999999999999985

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.55  E-value=3.9e-16  Score=125.67  Aligned_cols=59  Identities=39%  Similarity=0.808  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHhhchhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy11698        119 PEASKATEAVEFIAEHLRSEDQYIQIREDWKYVAMVIDRLQLYIFFIVTTAGTLGILMD  177 (197)
Q Consensus       119 ~~l~~~~~~v~~Ia~~~~~~~~~~~~~~dWk~vA~VlDRlfl~if~~~~~~~t~~i~~~  177 (197)
                      ++++.+.+.+++++++++++++.++.++||+++|.|+||+||++|.++++++|+++|+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eW~~vA~viDRi~~~~F~l~~ii~~i~if~~  218 (227)
T d1oeda_         160 PDVKSAIEGVKYIAEHMKSDEESSNAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAG  218 (227)
T ss_dssp             ---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999999999999999999999999999999999999985