Psyllid ID: psy11705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MGAFFYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAVILAEERLSKLEQTSTT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHcccccccEHHHHHHHHHHHHHHHHHHHEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MGAFFYSLRLKRLLKAwpgqkyfgiyrflplffgVGAALEFAMIKWEVNNGEINFYKTYKRNQAVILAEERLSkleqtstt
Flexible Loop (DISEMBL)
MGAFFYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAVILAeerlskleqtstt
Low Complexity Region (SEG)
MGAFFYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAVILAEERLSKLEQTSTT
Disordered region (IsUnstruct)
**AFFYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAVILA*************
Disordered Region (DISOPRED)
**********KRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYK*********************
Disordered Region (DISEMBL)
MGAFFYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAVILAEERLSKLEQTSTT
Disordered Region (DISPRO)
***FFYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAVILAEERLSKLE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGAFFYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAVILAEERLSKLEQTSTT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q9W3T5	79	Small integral membrane p	yes	N/A	0.790	0.810	0.606	3e-16
Q8C1Q6	80	Small integral membrane p	yes	N/A	0.864	0.875	0.443	2e-08
Q8WVI0	70	Small integral membrane p	yes	N/A	0.827	0.957	0.405	1e-07

>sp|Q9W3T5|SMIM4_DROME Small integral membrane protein 4 OS=Drosophila melanogaster GN=CG32736 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 50/66 (75%), Gaps = 2/66 (3%)

Query: 6  YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
          YS  ++RLL +WPG+K FG+YRFLPLFF +GA LEF+MI W V  GE NFY+T+KR QA 
Sbjct: 4  YSGSVRRLLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTV--GETNFYRTFKRRQAK 61

Query: 66 ILAEER 71
             EE+
Sbjct: 62 NYVEEQ 67

Drosophila melanogaster (taxid: 7227)

>sp|Q8C1Q6|SMIM4_MOUSE Small integral membrane protein 4 OS=Mus musculus GN=Smim4 PE=3 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 9/79 (11%)

Query: 5  FYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQA 64
          F   +++R L+  PG++ FGIYRFLP FF +G A+E+ MIK  V  G+  FY  Y+R   
Sbjct: 2  FSRAQVRRALQRVPGKQRFGIYRFLPFFFVLGGAMEWIMIK--VRVGQETFYDVYRRK-- 57

Query: 65 VILAEER--LSKLEQTSTT 81
             A ER    +LE TS T
Sbjct: 58 ---ASERQYQRRLEDTSET 73

Mus musculus (taxid: 10090)

>sp|Q8WVI0|SMIM4_HUMAN Small integral membrane protein 4 OS=Homo sapiens GN=SMIM4 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 5  FYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQA 64
          F   +++R+L+  PG++ FGIYRFLP FF +G  +E+ MIK  V  G+  FY  Y+R  +
Sbjct: 2  FTRAQVRRILQRVPGKQRFGIYRFLPFFFVLGGTMEWIMIK--VRVGQETFYDVYRRKAS 59

Query: 65 VILAEERLS 73
              + RL 
Sbjct: 60 ERQYQRRLE 68


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.140    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,423,822
Number of Sequences: 539616
Number of extensions: 908410
Number of successful extensions: 2451
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2444
Number of HSP's gapped (non-prelim): 7
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
157116410	81	hypothetical protein AaeL_AAEL007576 [Ae	0.827	0.827	0.623	7e-16
195398605	84	GJ15794 [Drosophila virilis] gi|19415033	0.839	0.809	0.614	1e-15
170031633	81	conserved hypothetical protein [Culex qu	0.740	0.740	0.645	4e-15
198469118	79	GA17109 [Drosophila pseudoobscura pseudo	0.777	0.797	0.630	9e-15
195168392	79	GL26821 [Drosophila persimilis] gi|19410	0.777	0.797	0.630	9e-15
195480561	79	GE15695 [Drosophila yakuba] gi|194188829	0.790	0.810	0.606	9e-15
194762482	79	GF20358 [Drosophila ananassae] gi|190629	0.913	0.936	0.539	1e-14
24640285	79	CG32736, isoform A [Drosophila melanogas	0.790	0.810	0.606	1e-14
195565526	79	GD16827 [Drosophila simulans] gi|1942037	0.790	0.810	0.606	1e-14
194896625	79	GG19627 [Drosophila erecta] gi|190650158	0.790	0.810	0.606	1e-14

>gi|157116410|ref|XP_001658463.1| hypothetical protein AaeL_AAEL007576 [Aedes aegypti] gi|108876487|gb|EAT40712.1| AAEL007576-PA [Aedes aegypti]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 50/69 (72%), Gaps = 2/69 (2%)

Query: 4  FFYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQ 63
          F  S  LK LL  WPG+KY GIYRFLPLFFG+GA LEF+MI W V  G+ NFY T+K+ Q
Sbjct: 3  FRRSQTLKHLLDLWPGKKYLGIYRFLPLFFGLGATLEFSMIHWRV--GDTNFYNTFKKRQ 60

Query: 64 AVILAEERL 72
          A  + EERL
Sbjct: 61 AKDIVEERL 69

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398605|ref|XP_002057911.1| GJ15794 [Drosophila virilis] gi|194150335|gb|EDW66019.1| GJ15794 [Drosophila virilis]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 53/70 (75%), Gaps = 2/70 (2%)

Query: 6  YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
          YS  ++RLL +WPG++ FGIYRFLPLFF +GAALEF+MIKW V  GE NFY+T+KR QA 
Sbjct: 4  YSSSVRRLLDSWPGKRRFGIYRFLPLFFVLGAALEFSMIKWTV--GETNFYRTFKRRQAK 61

Query: 66 ILAEERLSKL 75
             EE+   L
Sbjct: 62 NYIEEQQQHL 71

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170031633|ref|XP_001843689.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167870517|gb|EDS33900.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 47/62 (75%), Gaps = 2/62 (3%)

Query: 11 KRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAVILAEE 70
          KRLL  WPG+K  GIYRFLPLFFG+GA LEF+MI W V  G+ NFY T+K+ QA  + EE
Sbjct: 10 KRLLDLWPGKKTLGIYRFLPLFFGLGATLEFSMIHWRV--GDTNFYNTFKKRQAKDIVEE 67

Query: 71 RL 72
          RL
Sbjct: 68 RL 69

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198469118|ref|XP_001354917.2| GA17109 [Drosophila pseudoobscura pseudoobscura] gi|198146723|gb|EAL31973.2| GA17109 [Drosophila pseudoobscura pseudoobscura]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 2/65 (3%)

Query: 6  YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
          YS  ++RLL +WPG++ FGIYRFLPLFF +GAALEF+MI W V  GE NFY+T+KR QA 
Sbjct: 4  YSGSVRRLLDSWPGKRRFGIYRFLPLFFVLGAALEFSMINWTV--GETNFYRTFKRRQAK 61

Query: 66 ILAEE 70
             EE
Sbjct: 62 NYVEE 66

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195168392|ref|XP_002025015.1| GL26821 [Drosophila persimilis] gi|194108460|gb|EDW30503.1| GL26821 [Drosophila persimilis]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 2/65 (3%)

Query: 6  YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
          YS  ++RLL +WPG++ FGIYRFLPLFF +GAALEF+MI W V  GE NFY+T+KR QA 
Sbjct: 4  YSGSVRRLLDSWPGKRRFGIYRFLPLFFVLGAALEFSMINWTV--GETNFYRTFKRRQAK 61

Query: 66 ILAEE 70
             EE
Sbjct: 62 NYVEE 66

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195480561|ref|XP_002101305.1| GE15695 [Drosophila yakuba] gi|194188829|gb|EDX02413.1| GE15695 [Drosophila yakuba]

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 50/66 (75%), Gaps = 2/66 (3%)

Query: 6  YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
          YS  ++RLL +WPG+K FG+YRFLPLFF +GA LEF+MI W V  GE NFY+T+KR QA 
Sbjct: 4  YSGSVRRLLDSWPGKKRFGVYRFLPLFFFLGAGLEFSMINWTV--GETNFYRTFKRRQAK 61

Query: 66 ILAEER 71
             EE+
Sbjct: 62 NYVEEQ 67

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762482|ref|XP_001963363.1| GF20358 [Drosophila ananassae] gi|190629022|gb|EDV44439.1| GF20358 [Drosophila ananassae]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 53/76 (69%), Gaps = 2/76 (2%)

Query: 6  YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
          YS  ++RLL +WPG+K FG+YRFLPLFF +GA LEF+MI W V  GE NFY+T+KR QA 
Sbjct: 4  YSGSVRRLLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTV--GETNFYRTFKRRQAK 61

Query: 66 ILAEERLSKLEQTSTT 81
             EE+    E+   +
Sbjct: 62 NYVEEQQHLHERQDQS 77

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24640285|ref|NP_727152.1| CG32736, isoform A [Drosophila melanogaster] gi|45551427|ref|NP_727153.2| CG32736, isoform B [Drosophila melanogaster] gi|74949008|sp|Q9W3T5.1|SMIM4_DROME RecName: Full=Small integral membrane protein 4 gi|21064601|gb|AAM29530.1| RE60462p [Drosophila melanogaster] gi|22831867|gb|AAF46233.2| CG32736, isoform A [Drosophila melanogaster] gi|45446828|gb|AAF46232.3| CG32736, isoform B [Drosophila melanogaster] gi|220950816|gb|ACL87951.1| CG32736-PA [synthetic construct] gi|220959508|gb|ACL92297.1| CG32736-PA [synthetic construct]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 50/66 (75%), Gaps = 2/66 (3%)

Query: 6  YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
          YS  ++RLL +WPG+K FG+YRFLPLFF +GA LEF+MI W V  GE NFY+T+KR QA 
Sbjct: 4  YSGSVRRLLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTV--GETNFYRTFKRRQAK 61

Query: 66 ILAEER 71
             EE+
Sbjct: 62 NYVEEQ 67

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195565526|ref|XP_002106350.1| GD16827 [Drosophila simulans] gi|194203726|gb|EDX17302.1| GD16827 [Drosophila simulans]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 50/66 (75%), Gaps = 2/66 (3%)

Query: 6  YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
          YS  ++RLL +WPG+K FG+YRFLPLFF +GA LEF+MI W V  GE NFY+T+KR QA 
Sbjct: 4  YSGSVRRLLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTV--GETNFYRTFKRRQAK 61

Query: 66 ILAEER 71
             EE+
Sbjct: 62 NYVEEQ 67

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194896625|ref|XP_001978509.1| GG19627 [Drosophila erecta] gi|190650158|gb|EDV47436.1| GG19627 [Drosophila erecta]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 50/66 (75%), Gaps = 2/66 (3%)

Query: 6  YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
          YS  ++RLL +WPG+K FG+YRFLPLFF +GA LEF+MI W V  GE NFY+T+KR QA 
Sbjct: 4  YSGSVRRLLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTV--GETNFYRTFKRRQAK 61

Query: 66 ILAEER 71
             EE+
Sbjct: 62 NYVEEQ 67

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
FB|FBgn0052736	79	CG32736 [Drosophila melanogast	0.790	0.810	0.606	6.7e-17
RGD|1307583	79	Snhg8 "small nucleolar RNA hos	0.888	0.911	0.391	1.1e-09
MGI|MGI:1913737	80	Smim4 "small itegral membrane	0.901	0.912	0.4	1.4e-09
UNIPROTKB|F1MLG8	80	C22H3orf78 "Uncharacterized pr	0.888	0.9	0.378	2.2e-09
UNIPROTKB|E1C5S1	72	E1C5S1 "Uncharacterized protei	0.839	0.944	0.442	3.6e-09
UNIPROTKB|Q8WVI0	70	SMIM4 "Small integral membrane	0.814	0.942	0.411	7.6e-09
UNIPROTKB|F1PKB1	69	C3orf78 "Uncharacterized prote	0.814	0.956	0.382	4.2e-08

FB|FBgn0052736 CG32736 [Drosophila melanogaster (taxid:7227)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 40/66 (60%), Positives = 50/66 (75%)

Query:     6 YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
             YS  ++RLL +WPG+K FG+YRFLPLFF +GA LEF+MI W V  GE NFY+T+KR QA 
Sbjct:     4 YSGSVRRLLDSWPGKKRFGVYRFLPLFFLLGAGLEFSMINWTV--GETNFYRTFKRRQAK 61

Query:    66 ILAEER 71
                EE+
Sbjct:    62 NYVEEQ 67

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

RGD|1307583 Snhg8 "small nucleolar RNA host gene (non-protein coding) 8" [Rattus norvegicus (taxid:10116)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query:     6 YSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAV 65
             +  +L+R L+  PG++ FGIYRFLP FF +G  +E+ MIK  V  G+  FY  Y+R  + 
Sbjct:     2 FRAQLRRALQRVPGKQRFGIYRFLPFFFVLGGTMEWIMIKVRV--GQETFYDVYRRKASE 59

Query:    66 ILAEERLSKLEQTS 79
                + RL  + +T+
Sbjct:    60 RQYQRRLEDISETN 73

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1913737 Smim4 "small itegral membrane protein 4" [Mus musculus (taxid:10090)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 30/75 (40%), Positives = 45/75 (60%)

Query:     5 FYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQA 64
             F   +++R L+  PG++ FGIYRFLP FF +G A+E+ MIK  V  G+  FY  Y+R  +
Sbjct:     2 FSRAQVRRALQRVPGKQRFGIYRFLPFFFVLGGAMEWIMIKVRV--GQETFYDVYRRKAS 59

Query:    65 VILAEERLSKLEQTS 79
                 + RL    +T+
Sbjct:    60 ERQYQRRLEDTSETN 74

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MLG8 C22H3orf78 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query:     5 FYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQA 64
             F   +++R+L+  PG++ FG+YRFLP FF +G  +E+ MIK  V  G+  FY  Y+R  +
Sbjct:     2 FSRAQVRRVLQRMPGKQRFGVYRFLPFFFVLGGTMEWIMIKVRV--GQETFYDVYRRKAS 59

Query:    65 VILAEERLSKLEQT 78
                 + RL    +T
Sbjct:    60 ERQYQRRLQDASET 73

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1C5S1 E1C5S1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 31/70 (44%), Positives = 42/70 (60%)

Query:     7 SLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAVI 66
             S RLKRLL+  PG++  G YR LP FF +G A+E+ MI   V  G+  FY  Y+R ++  
Sbjct:     4 SRRLKRLLRLVPGRERLGAYRLLPFFFVLGGAMEWFMIN--VRIGKETFYDVYRRKRSER 61

Query:    67 LAEERLSKLE 76
               E R+ K E
Sbjct:    62 QYEARMEKSE 71

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q8WVI0 SMIM4 "Small integral membrane protein 4" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 28/68 (41%), Positives = 42/68 (61%)

Query:     5 FYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQA 64
             F   +++R+L+  PG++ FGIYRFLP FF +G  +E+ MIK  V  G+  FY  Y+R  +
Sbjct:     2 FTRAQVRRILQRVPGKQRFGIYRFLPFFFVLGGTMEWIMIKVRV--GQETFYDVYRRKAS 59

Query:    65 VILAEERL 72
                 + RL
Sbjct:    60 ERQYQRRL 67

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1PKB1 C3orf78 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 26/68 (38%), Positives = 41/68 (60%)

Query:     5 FYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQA 64
             F   +++R+L+  PG++  G+YRFLP FF +G  +E+ MIK  V  G+  FY  Y+R  +
Sbjct:     2 FSRAQVRRVLQRVPGKQRLGVYRFLPFFFVLGGTMEWIMIKLRV--GQETFYDVYRRKAS 59

Query:    65 VILAEERL 72
                 + RL
Sbjct:    60 ERQYQRRL 67


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.140   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       81        81   0.00091  102 3  11 22  0.36    29
                                                     29  0.42    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  512 (54 KB)
  Total size of DFA:  99 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  7.89u 0.09s 7.98t   Elapsed:  00:00:07
  Total cpu time:  7.89u 0.09s 7.98t   Elapsed:  00:00:08
  Start:  Thu Aug 15 12:57:34 2013   End:  Thu Aug 15 12:57:42 2013

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WVI0	SMIM4_HUMAN	No assigned EC number	0.4057	0.8271	0.9571	yes	N/A
Q8C1Q6	SMIM4_MOUSE	No assigned EC number	0.4430	0.8641	0.875	yes	N/A
Q9W3T5	SMIM4_DROME	No assigned EC number	0.6060	0.7901	0.8101	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF15114	69	UPF0640: Uncharacterised protein family UPF0640	100.0

>PF15114 UPF0640: Uncharacterised protein family UPF0640

Probab=100.00  E-value=1.4e-46  Score=244.00  Aligned_cols=68  Identities=62%  Similarity=1.137  Sum_probs=65.7

Q ss_pred             hhhhHHHHHHHHhcCCCcccchhhhhHHHHhhhhhhhhhheeeeeecCcchhhhHHhhHHHHHHHHHHhh
Q psy11705          4 FFYSLRLKRLLKAWPGQKYFGIYRFLPLFFGVGAALEFAMIKWEVNNGEINFYKTYKRNQAVILAEERLS   73 (81)
Q Consensus         4 ~~~s~~ikrll~~~PGK~rfG~YRflP~FF~lGaamE~~MIn~~v~~G~~nFYdvyrRkqae~~~e~rl~   73 (81)
                      ..+|++|++||++||||++||+|||||+||||||||||+||||+|  |+|||||||||||||++||+|++
T Consensus         2 ~~~s~~i~~ll~~~PGK~~fG~YRFLP~FF~lGaalE~~MIn~~v--G~~~FY~tykrrqae~~~e~rl~   69 (69)
T PF15114_consen    2 FLRSRRIRRLLDLWPGKRRFGIYRFLPLFFVLGAALEWSMINWRV--GKENFYDTYKRRQAERQVEQRLK   69 (69)
T ss_pred             chhHHHHHHHHHHCCCccccchhhhhHHHHHhhhhheEEEEEEee--CceeHHHHHHHHHHHHHHHHhcC
Confidence            458999999999999999999999999999999999999999999  99999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00