Psyllid ID: psy11719

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------

MPQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLTAMCLISLHISSLATNMLSKFKEILDTYLTDKVIIPDNHKKEITYQLGTFDSESVSVLLRFLPIYLETGDNRLLLLTPMVSELNPWSIHEPSYRVGPMPQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLYVLFGTKFSTFELSENDNVPDDTLTSRFQDLGRWLTPCGLVYLLFGTSSTAVNFEVNADPDIRSYKFK

ccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccEEccccHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccHHHcccccccccccccccEEccccccccccccEEEEEEEEEEccccccEEEEEEEEEEEcccccccccccccccccEEEEEcccccccccccEEEEEEEEEEccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEcccccccccccc

ccccEHHccccHHHccccEEcccHccccccHHHccccccHHHHcccccHHHccccccHHHccccccHHHccccccHHHHcccccHHHccccccHHHccccccHHHccccccHHHccccccHHHccccccHHHccccccHHHccccccccHccccccHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEEcccccEEEEEcccccccHHHHHHHHccHHHHHccccHEEEcccccHHcccccccHHHHHccccccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccHHHHHHHHEcccEEcccccccccccHHHEEcccccEEEEcccccccccEEEEEEEEEEEEccccccEEEcEEEEccEEEEEEccHcccEccccEEEEEEEEEEcccccccccEEEEEEEEEcccEEcEEEEEcccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccEcccc

mpqtvsnlplqpsqssgTLWLKAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLTAMCLISLHISSLATNMLSKFKEILDTyltdkviipdnhkkeityqlgtfdseSVSVLLRFLPIyletgdnrlllltpmvselnpwsihepsyrvgpmpqtvsnlplqpsqssgTLWLKAMCDALWLTAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKrearephkrAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQkhekkeegalpvylldRDVQSRAKVLSNMIKQKRKekagkwevpipkvrtqaDAEVFKIVRSGKTKRKAWKRMITKVCFvgenftrkppkferFIRPMALrfnkahvthpelkatfylpiigvkknpnspmytnlgvitKGTVIEVNISELGLVTQAGKVVWGKYaqvtnnpendgciNAVLLYVLFGTKfstfelsendnvpddtltSRFQDLGRWLTPCGLVYLLFgtsstavnfevnadpdirsykfk

mpqtvsnlplqpsqssGTLWLKAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLTAMCLISLHISSLATNMLSKFKEILDTYltdkviipdnHKKEITYQLGTFDSESVSVLLRFLPIYLETGDNRLLLLTPMVSELNPWSIHEPSYRVGPMPQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLTAMSLHNEYIERhrklygrrldyeerkrkrearephkraekarsvrkikaklynkqrrnekiqmkkKIKAHeekltkqkhekkeegalpvylldrdvqSRAKVLSNMikqkrkekagkwevpipkvrtqadaevfkivrsgktkrkawkrmitkvcfvgenftrkppkfeRFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLYVLFGTKFSTFelsendnvpdDTLTSRFQDLGRWLTPCGLVYLLFGTsstavnfevnadpdirsykfk

MPQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLTAMCLISLHISSLATNMLSKFKEILDTYLTDKVIIPDNHKKEITYQLGTFDSESVSVLLRFLPIYLETGDNRLLLLTPMVSELNPWSIHEPSYRVGPMPQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYeerkrkrearephkraekarSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLYVLFGTKFSTFELSENDNVPDDTLTSRFQDLGRWLTPCGLVYLLFGTSSTAVNFEVNADPDIRSYKFK

*****************TLWLKAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLTAMCLISLHISSLATNMLSKFKEILDTYLTDKVIIPDNHKKEITYQLGTFDSESVSVLLRFLPIYLETGDNRLLLLTPMVSELNPWSIHEPSY********************GTLWLKAMCDALWLTAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRL*******************************************************************PVYLLDRD*********************KWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLYVLFGTKFSTFELSENDNVPDDTLTSRFQDLGRWLTPCGLVYLLFGTSSTAVNFEVN***********

**************SSGTLWLKAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLTAMCLISLHISSLATNMLSKFKEILDTYLTDKVIIPDNHKKEITYQLGTFDSESVSVLLRFLPIYLETGDNRLLLLTPMVSELNPWSIHEPSYRVGPMPQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEER********************KIKAKLYNKQRRN*KI***************************VYLLDRDVQSRAKV*****************VPIPKVRTQ**********************ITKVCFVGENFTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLYVLFGTKFSTFE***************FQDLGRWLTPCGLVYLLFGTSSTAVNFEVNADPD**SYK**

*************QSSGTLWLKAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLTAMCLISLHISSLATNMLSKFKEILDTYLTDKVIIPDNHKKEITYQLGTFDSESVSVLLRFLPIYLETGDNRLLLLTPMVSELNPWSIHEPSYRVGPMPQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYE********************VRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLYVLFGTKFSTFELSENDNVPDDTLTSRFQDLGRWLTPCGLVYLLFGTSSTAVNFEVNADPDIRSYKFK

*PQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLTAMCLISLHISSLATNMLSKFKEILDTYLTDKVIIPDNHKKEITYQLGTFDSESVSVLLRFLPIYLETGDNRLLLLTPMVSELNPWSIHEPSYRVGPMPQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEK**********EGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLYVLFGTKFSTFELSEN*******LTSRFQDLGRWLTPCGLVYLLFGTSSTAVNFEVNADPDIRSYKFK

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MPQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLKAMCDTLWLTTMCDALWLTAMCLISLHISSLATNMLSKFKEILDTYLTDKVIIPDNHKKEITYQLGTFDSESVSVLLRFLPIYLETGDNRLLLLTPMVSELNPWSIHEPSYRVGPMPQTVSNLPLQPSQSSGTLWLKAMCDALWLTAMCDALWLTAMCDALWLKAMCDTLWLTTMCDALWLTAMSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLLYVLFGTKFSTFELSENDNVPDDTLTSRFQDLGRWLTPCGLVYLLFGTSSTAVNFEVNADPDIRSYKFK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		657	2.2.26 [Sep-21-2011]
O95478		260	Ribosome biogenesis prote	yes	N/A	0.389	0.984	0.766	1e-115
Q3SX11		260	Ribosome biogenesis prote	yes	N/A	0.389	0.984	0.766	1e-115
Q9CR47		260	Ribosome biogenesis prote	yes	N/A	0.389	0.984	0.766	1e-114
Q9QYU7		260	Ribosome biogenesis prote	yes	N/A	0.389	0.984	0.750	1e-113
Q54GN8		260	Ribosome biogenesis prote	yes	N/A	0.389	0.984	0.677	1e-100
Q4P3S7		273	Ribosome biogenesis prote	N/A	N/A	0.394	0.948	0.65	1e-99
Q9UU79		260	Ribosome biogenesis prote	yes	N/A	0.389	0.984	0.642	2e-94
P0CQ60		254	Ribosome biogenesis prote	yes	N/A	0.383	0.992	0.640	3e-94
P0CQ61		254	Ribosome biogenesis prote	N/A	N/A	0.383	0.992	0.640	3e-94
A5DZE1		261	Ribosome biogenesis prote	N/A	N/A	0.389	0.980	0.631	5e-90

>sp\|O95478\|NSA2_HUMAN Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=NSA2 PE=1 SV=1	Back alignment and function desciption

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/257 (76%), Positives = 227/257 (88%), Gaps = 1/257 (0%)

Query: 334 HNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMK 393
            NEYIE HRK YG RLDY E+KRK+E+RE H+R++KA+ +  +KAKLY+KQR  EKIQMK
Sbjct: 3   QNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMK 62

Query: 394 KKIKAHEEKLTKQKH-EKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIP 452
           K IK HE++ TKQK+ EK  +GA+P YLLDR+ QSRAKVLSNMIKQKRKEKAGKWEVP+P
Sbjct: 63  KTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLP 122

Query: 453 KVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAH 512
           KVR Q + EV K++R+GK K+KAWKRM+TKVCFVG+ FTRKPPK+ERFIRPM LRF KAH
Sbjct: 123 KVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAH 182

Query: 513 VTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYA 572
           VTHPELKATF LPI+GVKKNP+SP+YT LGVITKGTVIEVN+SELGLVTQ GKV+WGKYA
Sbjct: 183 VTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYA 242

Query: 573 QVTNNPENDGCINAVLL 589
           QVTNNPENDGCINAVLL
Sbjct: 243 QVTNNPENDGCINAVLL 259

Involved in the biogenesis of the 60S ribosomal subunit. May play a part in the quality control of pre-60S particles.
Homo sapiens (taxid: 9606)

>sp\|Q3SX11\|NSA2_BOVIN Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=NSA2 PE=2 SV=1	Back alignment and function description

>sp\|Q9CR47\|NSA2_MOUSE Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Nsa2 PE=2 SV=1	Back alignment and function description

>sp\|Q9QYU7\|NSA2_RAT Ribosome biogenesis protein NSA2 homolog OS=Rattus norvegicus GN=Nsa2 PE=2 SV=2	Back alignment and function description

>sp\|Q54GN8\|NSA2_DICDI Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1	Back alignment and function description

>sp\|Q4P3S7\|NSA2_USTMA Ribosome biogenesis protein NSA2 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=NSA2 PE=3 SV=1	Back alignment and function description

>sp\|Q9UU79\|NSA2_SCHPO Ribosome biogenesis protein nsa2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nsa2 PE=1 SV=1	Back alignment and function description

>sp\|P0CQ60\|NSA2_CRYNJ Ribosome biogenesis protein NSA2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NSA2 PE=3 SV=1	Back alignment and function description

>sp\|P0CQ61\|NSA2_CRYNB Ribosome biogenesis protein NSA2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NSA2 PE=3 SV=1	Back alignment and function description

>sp\|A5DZE1\|NSA2_LODEL Ribosome biogenesis protein NSA2 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=NSA2 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		657
112984142		259	TGF beta-inducible nuclear protein 1 [Bo	0.389	0.988	0.898	1e-133
121543937		259	putative TGF beta-inducible nuclear prot	0.389	0.988	0.882	1e-132
87248237		259	hairy cell leukemia protein 1 [Bombyx mo	0.389	0.988	0.894	1e-132
332376065		259	unknown [Dendroctonus ponderosae]	0.389	0.988	0.882	1e-131
357627501		259	hairy cell leukemia protein 1 [Danaus pl	0.389	0.988	0.878	1e-130
389610189		259	conserved hypothetical protein [Papilio	0.389	0.988	0.875	1e-130
322802243		259	hypothetical protein SINV_00582 [Solenop	0.389	0.988	0.859	1e-129
307172444		259	Ribosome biogenesis protein NSA2-like pr	0.389	0.988	0.847	1e-127
242020114		259	TGF-beta-inducible nuclear protein, puta	0.389	0.988	0.843	1e-127
332024400		259	Ribosome biogenesis protein NSA2-like pr	0.389	0.988	0.847	1e-127

>gi\|112984142\|ref\|NP_001037438.1\| TGF beta-inducible nuclear protein 1 [Bombyx mori] gi\|90018289\|gb\|ABD83950.1\| TGF beta-inducible nuclear protein 1 [Bombyx mori]	Back alignment and taxonomy information

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/256 (89%), Positives = 243/256 (94%)

Query: 334 HNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMK 393
            NEYIERH+KLYGRRLDYEERKRKREAREPHKRAEKAR +R IKAK++NK+RRNEKIQMK
Sbjct: 3   QNEYIERHQKLYGRRLDYEERKRKREAREPHKRAEKARKLRGIKAKIFNKERRNEKIQMK 62

Query: 394 KKIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPK 453
           KKIKAHEEK  KQ  EK  EGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKW+VPIPK
Sbjct: 63  KKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPK 122

Query: 454 VRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHV 513
           VR QADAEVFK+++SGK+KRKAWKRM+TKV FVGENFTRKPPKFERFIRPMALRF KAHV
Sbjct: 123 VRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKAHV 182

Query: 514 THPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQ 573
           THPELKATF LPIIGVKKNP+SPMYT+LGVITKGTVIEVNISELGLVTQAGKVVWGKYAQ
Sbjct: 183 THPELKATFCLPIIGVKKNPSSPMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQ 242

Query: 574 VTNNPENDGCINAVLL 589
           VTNNPENDGCINAVLL
Sbjct: 243 VTNNPENDGCINAVLL 258

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|121543937\|gb\|ABM55633.1\| putative TGF beta-inducible nuclear protein 1 [Maconellicoccus hirsutus]	Back alignment and taxonomy information

>gi\|87248237\|gb\|ABD36171.1\| hairy cell leukemia protein 1 [Bombyx mori] gi\|221579705\|gb\|ACM24351.1\| TGF-beta-inducible nuclear protein 1 [Bombyx mori]	Back alignment and taxonomy information

>gi\|332376065\|gb\|AEE63173.1\| unknown [Dendroctonus ponderosae]	Back alignment and taxonomy information

>gi\|357627501\|gb\|EHJ77180.1\| hairy cell leukemia protein 1 [Danaus plexippus]	Back alignment and taxonomy information

>gi\|389610189\|dbj\|BAM18706.1\| conserved hypothetical protein [Papilio xuthus]	Back alignment and taxonomy information

>gi\|322802243\|gb\|EFZ22639.1\| hypothetical protein SINV_00582 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|307172444\|gb\|EFN63897.1\| Ribosome biogenesis protein NSA2-like protein [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|242020114\|ref\|XP_002430501.1\| TGF-beta-inducible nuclear protein, putative [Pediculus humanus corporis] gi\|212515658\|gb\|EEB17763.1\| TGF-beta-inducible nuclear protein, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|332024400\|gb\|EGI64598.1\| Ribosome biogenesis protein NSA2-like protein [Acromyrmex echinatior]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		657
FB\|FBgn0025366		259	Ip259 "Intronic Protein 259" [	0.388	0.984	0.776	8.6e-104
UNIPROTKB\|O95478		260	NSA2 "Ribosome biogenesis prot	0.388	0.980	0.726	2.8e-98
UNIPROTKB\|Q3SX11		260	NSA2 "Ribosome biogenesis prot	0.388	0.980	0.726	3.5e-98
MGI\|MGI:1913883		260	Nsa2 "NSA2 ribosome biogenesis	0.388	0.980	0.726	5.8e-98
UNIPROTKB\|Q2I0Y6		260	Cdk105 "TGF beta-inducible nuc	0.388	0.980	0.726	5.8e-98
RGD\|621335		260	Nsa2 "NSA2 ribosome biogenesis	0.388	0.980	0.710	2.2e-96
WB\|WBGene00012351		259	W09C5.1 [Caenorhabditis elegan	0.388	0.984	0.654	5.9e-89
DICTYBASE\|DDB_G0290031		260	DDB_G0290031 "ribosome biogene	0.386	0.976	0.647	8.6e-88
TAIR\|locus:2164245		260	AT5G06360 "AT5G06360" [Arabido	0.386	0.976	0.635	3.9e-83
POMBASE\|SPCP1E11.08		260	SPCP1E11.08 "ribosome biogenes	0.388	0.980	0.601	3.7e-80

FB\|FBgn0025366 Ip259 "Intronic Protein 259" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 198/255 (77%), Positives = 218/255 (85%)

Query:   335 NEYIERHRKLYGRRLDYXXXXXXXXXXXXXXXXXXXXSVRKIKAKLYNKQRRNEKIQMKK 394
             NEY+ERHRKLYGRRLDY                     +R IKAKL+NK+RRNEKIQ+KK
Sbjct:     4 NEYMERHRKLYGRRLDYEERKRKKEARLPKDRARKARKLRGIKAKLFNKERRNEKIQIKK 63

Query:   395 KIKAHEEKLTKQKHEKKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKV 454
             KI+AHEEK  K++ EK E+GALP YLLDR +QS AKVLSNMIKQKRKEKAGKW+VPIPKV
Sbjct:    64 KIQAHEEKKVKKQEEKVEDGALPHYLLDRGIQSSAKVLSNMIKQKRKEKAGKWDVPIPKV 123

Query:   455 RTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHVT 514
             R Q+DAEVFK++++GKTKRKAWKRM+TKV FVGENFTRKPPKFERFIRPM LR  KAHVT
Sbjct:   124 RAQSDAEVFKVLKTGKTKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMGLRMKKAHVT 183

Query:   515 HPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQV 574
             HPELKATF LPIIGVKKNP+SPM+T+LGVITKGTVIEVNISELGLVTQ GKVVWGKYAQV
Sbjct:   184 HPELKATFNLPIIGVKKNPSSPMFTSLGVITKGTVIEVNISELGLVTQTGKVVWGKYAQV 243

Query:   575 TNNPENDGCINAVLL 589
             TNNPENDG INAVLL
Sbjct:   244 TNNPENDGVINAVLL 258

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB\|O95478 NSA2 "Ribosome biogenesis protein NSA2 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3SX11 NSA2 "Ribosome biogenesis protein NSA2 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1913883 Nsa2 "NSA2 ribosome biogenesis homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2I0Y6 Cdk105 "TGF beta-inducible nuclear protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

RGD\|621335 Nsa2 "NSA2 ribosome biogenesis homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

WB\|WBGene00012351 W09C5.1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290031 DDB_G0290031 "ribosome biogenesis protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TAIR\|locus:2164245 AT5G06360 "AT5G06360" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

POMBASE\|SPCP1E11.08 SPCP1E11.08 "ribosome biogenesis protein Nsa2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CR47	NSA2_MOUSE	No assigned EC number	0.7665	0.3896	0.9846	yes	N/A
Q6CNC5	NSA2_KLULA	No assigned EC number	0.6279	0.3896	0.9808	yes	N/A
Q6BU14	NSA2_DEBHA	No assigned EC number	0.6162	0.3896	0.9808	yes	N/A
Q4WX36	NSA2_ASPFU	No assigned EC number	0.6117	0.3850	0.8939	yes	N/A
P40078	NSA2_YEAST	No assigned EC number	0.6124	0.3896	0.9808	yes	N/A
O95478	NSA2_HUMAN	No assigned EC number	0.7665	0.3896	0.9846	yes	N/A
Q5B954	NSA2_EMENI	No assigned EC number	0.6007	0.3896	0.9808	yes	N/A
Q9UU79	NSA2_SCHPO	No assigned EC number	0.6420	0.3896	0.9846	yes	N/A
Q3SX11	NSA2_BOVIN	No assigned EC number	0.7665	0.3896	0.9846	yes	N/A
Q75CG9	NSA2_ASHGO	No assigned EC number	0.6317	0.3896	0.9808	yes	N/A
P0CQ60	NSA2_CRYNJ	No assigned EC number	0.6403	0.3835	0.9921	yes	N/A
A3LQ06	NSA2_PICST	No assigned EC number	0.6279	0.3896	0.9808	yes	N/A
Q54GN8	NSA2_DICDI	No assigned EC number	0.6770	0.3896	0.9846	yes	N/A
Q6C6D1	NSA2_YARLI	No assigned EC number	0.6124	0.3881	0.9732	yes	N/A
Q9QYU7	NSA2_RAT	No assigned EC number	0.7509	0.3896	0.9846	yes	N/A
Q6FN72	NSA2_CANGA	No assigned EC number	0.6384	0.3866	0.9731	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		657
cd11381		257	cd11381, NSA2, pre-ribosomal protein NSA2 (Nop sev	0.0
PTZ00388		223	PTZ00388, PTZ00388, 40S ribosomal protein S8-like;	1e-148
cd11380		138	cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal r	8e-73
COG2007		127	COG2007, RPS8A, Ribosomal protein S8E [Translation	5e-34
pfam01201		129	pfam01201, Ribosomal_S8e, Ribosomal protein S8e	1e-32
PRK04049		127	PRK04049, PRK04049, 30S ribosomal protein S8e; Val	2e-11
cd11382		122	cd11382, Ribosomal_S8e, Eukaryotic/archaeal riboso	1e-08
TIGR00307		127	TIGR00307, S8e, ribosomal protein S8	1e-07
pfam06658		142	pfam06658, DUF1168, Protein of unknown function (D	3e-05
pfam05672		171	pfam05672, MAP7, MAP7 (E-MAP-115) family	5e-05
pfam06102		168	pfam06102, DUF947, Domain of unknown function (DUF	2e-04
pfam13868		349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	3e-04
COG2007		127	COG2007, RPS8A, Ribosomal protein S8E [Translation	0.001
PRK00409		782	PRK00409, PRK00409, recombination and DNA strand e	0.002
COG2147		150	COG2147, RPL19A, Ribosomal protein L19E [Translati	0.003
TIGR03319		514	TIGR03319, RNase_Y, ribonuclease Y	0.003
pfam04615		728	pfam04615, Utp14, Utp14 protein	0.004

>gnl\|CDD\|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated 2)	Back alignment and domain information

 Score =  559 bits (1444), Expect = 0.0
 Identities = 200/256 (78%), Positives = 227/256 (88%), Gaps = 1/256 (0%)

Query: 335 NEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKK 394
           NEYIE HRK +GRRLD+EERKRK+EAREPHKR++KA+ +R +KAKLYNK+R  EKIQMKK
Sbjct: 1   NEYIELHRKRHGRRLDHEERKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKK 60

Query: 395 KIKAHEEKLTKQKHEKKE-EGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPK 453
            IK HEE+  KQK + K  EGA+P YLLDR+ QSRAKVLSNMIKQKRKEKAGKW VP+PK
Sbjct: 61  TIKMHEERNVKQKVDDKVPEGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWSVPLPK 120

Query: 454 VRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGENFTRKPPKFERFIRPMALRFNKAHV 513
           VR  ++ E+FK+V++GK K+K+WKRM+TKV FVGE FTRKPPK+ERFIRPM LRF KAHV
Sbjct: 121 VRGISEDEMFKVVKTGKRKKKSWKRMVTKVTFVGEGFTRKPPKYERFIRPMGLRFKKAHV 180

Query: 514 THPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQ 573
           THPELKATF LPIIGVKKNP SP+YT LGVITKGT+IEVN+SELGLVTQ GKVVWGKYAQ
Sbjct: 181 THPELKATFCLPIIGVKKNPQSPLYTQLGVITKGTIIEVNVSELGLVTQGGKVVWGKYAQ 240

Query: 574 VTNNPENDGCINAVLL 589
           VTNNPENDGCINAVLL
Sbjct: 241 VTNNPENDGCINAVLL 256

NSA2 appears to be a protein required for the maturation of 27S pre-rRNA in yeast; it has been characterized in mammalian cells as a nucleolar protein that might play a role in the regulation of the cell cycle and in cell proliferation. Length = 257

>gnl\|CDD\|240396 PTZ00388, PTZ00388, 40S ribosomal protein S8-like; Provisional	Back alignment and domain information

>gnl\|CDD\|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal protein S8e and similar proteins	Back alignment and domain information

>gnl\|CDD\|224918 COG2007, RPS8A, Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|201659 pfam01201, Ribosomal_S8e, Ribosomal protein S8e	Back alignment and domain information

>gnl\|CDD\|235214 PRK04049, PRK04049, 30S ribosomal protein S8e; Validated	Back alignment and domain information

>gnl\|CDD\|211394 cd11382, Ribosomal_S8e, Eukaryotic/archaeal ribosomal protein S8e (RPS8)	Back alignment and domain information

>gnl\|CDD\|129407 TIGR00307, S8e, ribosomal protein S8	Back alignment and domain information

>gnl\|CDD\|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)	Back alignment and domain information

>gnl\|CDD\|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family	Back alignment and domain information

>gnl\|CDD\|218899 pfam06102, DUF947, Domain of unknown function (DUF947)	Back alignment and domain information

>gnl\|CDD\|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin	Back alignment and domain information

>gnl\|CDD\|224918 COG2007, RPS8A, Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|188306 TIGR03319, RNase_Y, ribonuclease Y	Back alignment and domain information

>gnl\|CDD\|218177 pfam04615, Utp14, Utp14 protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		657
KOG3163\|consensus		260		100.0
PTZ00388		223	40S ribosomal protein S8-like; Provisional	100.0
PF01201		132	Ribosomal_S8e: Ribosomal protein S8e; InterPro: IP	100.0
COG2007		127	RPS8A Ribosomal protein S8E [Translation, ribosoma	100.0
TIGR00307		127	S8e ribosomal protein S8.e. Archaeal and eukaryoti	99.91
PRK04049		127	30S ribosomal protein S8e; Validated	99.91
PTZ00148		205	40S ribosomal protein S8; Provisional	99.59
KOG3283\|consensus		200		96.63
KOG3163\|consensus		260		96.31
PTZ00388		223	40S ribosomal protein S8-like; Provisional	92.05

>KOG3163\|consensus	Back alignment and domain information

Probab=100.00  E-value=3.8e-141  Score=1014.93  Aligned_cols=259  Identities=78%  Similarity=1.197  Sum_probs=257.3

Q ss_pred             cCCChhHHHHHHHhcCCCCCHHHHHhhhhhhhhhHhHHHhhhhhhhhhhhhhHhhhHHHHHHHHHHHHHHHHhhccc-cc
Q psy11719        331 MSLHNEYIERHRKLYGRRLDYEERKRKREAREPHKRAEKARSVRKIKAKLYNKQRRNEKIQMKKKIKAHEEKLTKQK-HE  409 (657)
Q Consensus       331 MP~QneyIE~h~Kr~GrRlD~eER~RKkeARe~H~~S~~AqklrGlKAKL~~kkR~~EKiqMKK~Ik~hEek~~k~~-~~  409 (657)
                      || ||||||+|||+||||||||||+||||||++|.+|+.||+++|||||||+|+||+|||||||+||||||++++++ .+
T Consensus         1 MP-Qndyie~h~k~~GrRlDheerkrKkeaR~~h~~s~~Akkl~G~KaKl~~kkr~aeKiqmkK~ik~hee~~~k~~~~e   79 (260)
T KOG3163|consen    1 MP-QNDYIERHRKRHGRRLDHEERKRKKEAREAHDRSKMAKKLRGIKAKLFAKKRYAEKIQMKKTIKMHEEKKKKQKNDE   79 (260)
T ss_pred             CC-chhHHHHHHHHhccccCHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence            99 99999999999999999999999999999999999999999999999999999999999999999999999988 88


Q ss_pred             CCCCCCCCceeecccccchhhHHhHHHHHHhhhhcccccccCcccccccchhhhheeecCccchhhhcccceeeeeeCCC
Q psy11719        410 KKEEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWEVPIPKVRTQADAEVFKIVRSGKTKRKAWKRMITKVCFVGEN  489 (657)
Q Consensus       410 ~~~~gavPaYLLDRe~~~~AKvLSn~IKQKRkEKAgKw~VPlPKVr~isE~EmFKVvkTGKrkkK~WKRmVTK~tFVGe~  489 (657)
                      ..++||||+||||||++++||+|||||||||+||||||+|||||||+++|+||||||+||||++|+|||||||+||||++
T Consensus        80 ~~~~gavP~yLLDRe~q~~ak~ls~~iKQkRkeKa~K~~VPlPkvr~~~e~E~fkVi~tgK~k~k~WKRmvTk~tFVg~~  159 (260)
T KOG3163|consen   80 KTPQGAVPAYLLDREQQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQSETEVFKVIRTGKRKKKAWKRMVTKVTFVGDG  159 (260)
T ss_pred             CCCCCCcchhhhchhhhhHHHHHHHHHHHHHHhhcccccccCcccccccHHHHHHHHhcCccchhHHHhhhheeeeecCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCccccccccccceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeec
Q psy11719        490 FTRKPPKFERFIRPMALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWG  569 (657)
Q Consensus       490 FTRKPPKyERFIRPmgLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWg  569 (657)
                      |||||||||||||||||||++||||||||++||+|||+||||||+||+||++||||||||||||||||||||++||||||
T Consensus       160 FTRkPpKyERfIRPm~lRfkkAhVthpEL~~Tf~LpIigvKKNP~sp~yT~LGvitkGTviEvnVseLGlVt~~GkvvWG  239 (260)
T KOG3163|consen  160 FTRKPPKYERFIRPMGLRFKKAHVTHPELKVTFCLPIIGVKKNPSSPMYTSLGVITKGTVIEVNVSELGLVTQGGKVVWG  239 (260)
T ss_pred             cccCCchHhhhhchhhhhhhhccccChhhceEEEeeeeEeccCCCCcceeecceeecceEEEEeccccceeccCceEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeEecCCCCccceeeeehh
Q psy11719        570 KYAQVTNNPENDGCINAVLLY  590 (657)
Q Consensus       570 KYAqVTnrPgqDGcINAVLLv  590 (657)
                      ||||||||||||||||||||+
T Consensus       240 KyAQvTNnPenDGciNAvLLv  260 (260)
T KOG3163|consen  240 KYAQVTNNPENDGCINAVLLV  260 (260)
T ss_pred             ehhhccCCccccceeeeEEeC
Confidence            999999999999999999986

>PTZ00388 40S ribosomal protein S8-like; Provisional	Back alignment and domain information

>PF01201 Ribosomal_S8e: Ribosomal protein S8e; InterPro: IPR022309 A number of eukaryotic and archaeal ribosomal proteins have been grouped based on sequence similarities []	Back alignment and domain information

>COG2007 RPS8A Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00307 S8e ribosomal protein S8	Back alignment and domain information

>PRK04049 30S ribosomal protein S8e; Validated	Back alignment and domain information

>PTZ00148 40S ribosomal protein S8; Provisional	Back alignment and domain information

>KOG3283\|consensus	Back alignment and domain information

>KOG3163\|consensus	Back alignment and domain information

>PTZ00388 40S ribosomal protein S8-like; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		657
2kcp_A		98	30S ribosomal protein S8E; RPS8E, beta, NESG, ribo	4e-28
2kco_A		133	30S ribosomal protein S8E; ribosomal protein of un	1e-21
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
4f61_I		240	Stathmin-like domain R4; alpha-tubulin, beta-tubul	3e-04

>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A Length = 98	Back alignment and structure

 Score =  107 bits (269), Expect = 4e-28
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 22/102 (21%)

Query: 495 PKFERFIRPM-------ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKG 547
            +  R IR              + +V  PE        I  V +N  +P +    +IT+G
Sbjct: 2   DRRVRLIRTRGGNTKVRLASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRG 61

Query: 548 TVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCINAVLL 589
            V+E         T  G        +VT+ P  DG IN VL+
Sbjct: 62  AVVE---------TNLGN------VRVTSRPGQDGVINGVLI 88

PyMOL of 2kcp

>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2} Length = 133	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		657
2kcp_A		98	30S ribosomal protein S8E; RPS8E, beta, NESG, ribo	99.93
2kco_A		133	30S ribosomal protein S8E; ribosomal protein of un	99.93
3j20_J		127	30S ribosomal protein S8E; archaea, archaeal, KINK	99.92
3u5c_I		200	RP19, S14, YS9, 40S ribosomal protein S8-A; transl	99.43
2xzm_2		208	40S ribosomal protein S8; ribosome, translation; 3	99.28

>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A	Back alignment and structure

Probab=99.93  E-value=4.2e-27  Score=203.76  Aligned_cols=71  Identities=32%  Similarity=0.493  Sum_probs=68.7

Q ss_pred             cceeeeEEeecCCCCcEEEEeeeeeeeCCCCCCcccccccccceEEEEecccccccccCCceeeceeeeEecCCCCccce
Q psy11719        505 ALRFNKAHVTHPELKATFYLPIIGVKKNPNSPMYTNLGVITKGTVIEVNISELGLVTQAGKVVWGKYAQVTNNPENDGCI  584 (657)
Q Consensus       505 gLR~kkAnVthPelk~T~~lpIigVkkNPsnp~YTrlGVITKGTIIEVNVSELGLVT~~GKVVWgKYAqVTnrPgqDGcI  584 (657)
                      +||+++|||+||+++.|++++|++|++||||++|+|+|+||||||||         |+.|+      |+|||||||||||
T Consensus        19 alr~~~aNv~~~~~~~t~k~~Ii~Vv~NpsN~~yvR~n~ltKGaII~---------~d~Gk------A~VTSRPGQdG~v   83 (98)
T 2kcp_A           19 LASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVE---------TNLGN------VRVTSRPGQDGVI   83 (98)
T ss_dssp             TTSCCCEEEECTTTCCEEEECEEESSCSCSSCTTCCSSCCCTTCEEE---------ESSSE------EEECSCTTGGGSC
T ss_pred             EEEeeeEEEEecccCeEEEEEEEEEEECCCChHHeecccEEeeeEEE---------ecCcE------EEEecCCCCccEE
Confidence            69999999999999999999999999999999999999999999999         66898      9999999999999


Q ss_pred             eeeehh
Q psy11719        585 NAVLLY  590 (657)
Q Consensus       585 NAVLLv  590 (657)
                      |||||+
T Consensus        84 navlL~   89 (98)
T 2kcp_A           84 NGVLIR   89 (98)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999875

PyMOL of 2kcp

>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}	Back alignment and structure

>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}	Back alignment and structure

>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I	Back alignment and structure

>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		657
d1sa0e_		138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	8e-04
d2es4d1		280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.002

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138	Back information, alignment and structure


class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 350 DYEERKRKREAREPHKRAEKA----------RSVRKIKAKLYNKQRRNEKIQMKKKIKAH 399
           + +++    E R  ++ AE            R V +   +  N   +  K ++ +K++++
Sbjct: 46  EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESN 105

Query: 400 EEKLTKQKHEKKE 412
           +E          E
Sbjct: 106 KENREAHLAAMLE 118

PyMOL of d1sa0e_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00