Psyllid ID: psy11725

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
NTTKQICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVR
cccccccccEEEEEEcccccEEEEEEccccccccccEEEEEEEEcccccccEEEEEcccccccEEEEcccEEEEEEEcEEcccccccccEEccccccccccccccccccccccEEEEcccEEEEEEEccccccccEEEEEEEccccccEEEEEEEEEcccccccccccccccccccccEEEEcccEEEEccccEEEEEccccccccccEEEEEEccccEEEEEEcHHHHcccccccccccccEEEEccccccccccEEEEcccccEEEEEcccccEEEEEcccccccccEEEEEEccccEEcccEEEEEccEEEEEEcccccccccccccccccEEEEEEcccHHHc
cccccccccEEEEEEcccccEEEEEEccHHHcccccEEEEEEEEccccccccEEEccccccccccccccEEEEEEEEcccccEEEEEcccccccccccccccccEEEEcccccEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEEEEEEcccccHccccccccccccccccccEcccEEEEccccEEEEEEccccccccEEEEEEccccccEEEEccHHEcccccccccccHHHEEEcccccccccccHHHcccccEEEEEEEccccEEEEcccccccccccEEEEEcccEEEEccccEEcccEEEEEEccccHHEcccccccccEEEEEEccHHHHcc
nttkqicpyaihvfdlktdrrirkyqfrpedilpgtfIANIAVDfasnnldilkSIPEEQRMLSEVEWGSDSYLKVLgiqwnpkedtfsfcvnlsdtkcskrsilsefniggltfhwfpegifgialtppeadgfknllfhpiashsefaVSTRVLRNKTLAESADSYNAYVkigdrgefniggltfhwfpegifgialtppeadgfknllfhpiashsefaVSTRVLRNKTLAESADSYNAYVkigdrgrdghltshvmdhngilYFNLIDrnavgcwnsqypykpenighididnealifpsdvkvvgddlwvisdrmpihleselnfndvnfriftvplqeavr
nttkqicpyaihvfdlktdrriRKYQfrpedilpgtFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTlaesadsynAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLeselnfndvnfRIFTVPLQEAVR
NTTKQICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVR
****QICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPL*****
****QICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDR********HVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVR
NTTKQICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVR
****QICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVR
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NTTKQICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVGDDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query347 2.2.26 [Sep-21-2011]
Q9GP71 568 Protein yellow OS=Drosoph N/A N/A 0.533 0.325 0.489 7e-48
O02437 568 Protein yellow OS=Drosoph N/A N/A 0.533 0.325 0.484 1e-47
Q9BI18 560 Protein yellow OS=Drosoph yes N/A 0.533 0.330 0.489 3e-47
Q9GP81 568 Protein yellow OS=Drosoph N/A N/A 0.533 0.325 0.489 3e-47
P62407 541 Protein yellow OS=Drosoph N/A N/A 0.533 0.341 0.489 5e-47
P62408 541 Protein yellow OS=Drosoph N/A N/A 0.533 0.341 0.489 5e-47
P09957 541 Protein yellow OS=Drosoph yes N/A 0.533 0.341 0.489 5e-47
Q9BI23 541 Protein yellow OS=Drosoph N/A N/A 0.484 0.310 0.508 6e-47
Q9BI17 541 Protein yellow OS=Drosoph N/A N/A 0.484 0.310 0.508 6e-47
O77061452 Major royal jelly protein no N/A 0.463 0.356 0.266 2e-11
>sp|Q9GP71|YELL_DROMD Protein yellow OS=Drosophila madeirensis GN=y PE=3 SV=1 Back     alignment and function desciption
 Score =  191 bits (485), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 93/190 (48%), Positives = 134/190 (70%), Gaps = 5/190 (2%)

Query: 158 NKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIAS 217
           NK+   SA SY  +     RG+FN+ G+ F W  EGIFG++LTP  +DG++ L F P+AS
Sbjct: 222 NKSWRFSAHSY--FFPDPLRGDFNVAGINFQWGEEGIFGMSLTPIRSDGYRTLYFSPLAS 279

Query: 218 HSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVG 277
           H +FAVSTR+LR++T  E  DSY+ +V + +RG + H TS VM  +G+  FNLID+NAVG
Sbjct: 280 HRQFAVSTRILRDETRTE--DSYHDFVALDERGPNAHTTSRVMSDDGVELFNLIDQNAVG 337

Query: 278 CWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISDRMPIHLESELNFNDVNFR 336
           CW+S  PY P++ G +D D+  L+FP+DVK+    ++WV+SDRMP+ L S+L+++D NFR
Sbjct: 338 CWHSSMPYSPQSHGIVDRDDVGLVFPADVKIDENKNVWVLSDRMPVFLLSDLDYSDTNFR 397

Query: 337 IFTVPLQEAV 346
           I+T PL   +
Sbjct: 398 IYTAPLATLI 407
Controls the pigmentation pattern of the adult cuticle and larval mouth parts.
Drosophila madeirensis (taxid: 30013)
>sp|O02437|YELL_DROSU Protein yellow OS=Drosophila subobscura GN=y PE=3 SV=1 Back     alignment and function description
>sp|Q9BI18|YELL_DROPS Protein yellow OS=Drosophila pseudoobscura pseudoobscura GN=y PE=3 SV=2 Back     alignment and function description
>sp|Q9GP81|YELL_DROGU Protein yellow OS=Drosophila guanche GN=y PE=3 SV=1 Back     alignment and function description
>sp|P62407|YELL_DROSI Protein yellow OS=Drosophila simulans GN=y PE=3 SV=1 Back     alignment and function description
>sp|P62408|YELL_DROMA Protein yellow OS=Drosophila mauritiana GN=y PE=3 SV=1 Back     alignment and function description
>sp|P09957|YELL_DROME Protein yellow OS=Drosophila melanogaster GN=y PE=1 SV=1 Back     alignment and function description
>sp|Q9BI23|YELL_DROER Protein yellow OS=Drosophila erecta GN=y PE=3 SV=1 Back     alignment and function description
>sp|Q9BI17|YELL_DROYA Protein yellow OS=Drosophila yakuba GN=y PE=3 SV=1 Back     alignment and function description
>sp|O77061|MRJP2_APIME Major royal jelly protein 2 OS=Apis mellifera GN=MRJP2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
288869481423 yellow-y precursor [Acyrthosiphon pisum] 0.484 0.397 0.605 3e-52
307178532382 Protein yellow [Camponotus floridanus] 0.481 0.437 0.550 2e-49
350413914429 PREDICTED: protein yellow-like [Bombus i 0.481 0.389 0.538 6e-49
340712146429 PREDICTED: protein yellow-like [Bombus t 0.481 0.389 0.538 9e-49
383850349 603 PREDICTED: protein yellow-like [Megachil 0.481 0.276 0.550 1e-48
152002411 509 Yellow [Papilio xuthus] 0.484 0.330 0.535 1e-48
323505959 487 yellow [Heliconius numata] 0.484 0.344 0.538 3e-48
296040341 508 Yellow [Papilio polytes] 0.484 0.330 0.523 3e-48
380017835430 PREDICTED: protein yellow-like [Apis flo 0.481 0.388 0.538 4e-48
290578556430 yellow-like protein [Apis mellifera] 0.481 0.388 0.532 4e-48
>gi|288869481|ref|NP_001165848.1| yellow-y precursor [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/170 (60%), Positives = 131/170 (77%), Gaps = 2/170 (1%)

Query: 178 GEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESA 237
           G++NIGG+ F W  EGIFGI L+P    GF+ L FHP+AS+ EFAVST +LRN  L  S 
Sbjct: 230 GDYNIGGINFQWGEEGIFGITLSPITESGFRLLFFHPLASNREFAVSTEILRNPKLT-SE 288

Query: 238 DSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDN 297
           + Y+ +V +  RG  GH+T+H M  +GIL+FNLIDRNAVGCWNS+ PY+P+N+G ID+D+
Sbjct: 289 EIYHDFVVLPSRGPGGHVTAHYMHDDGILFFNLIDRNAVGCWNSRLPYEPKNLGIIDVDD 348

Query: 298 EALIFPSDVKVVG-DDLWVISDRMPIHLESELNFNDVNFRIFTVPLQEAV 346
           EALIFPSDVKV   +++WVISDRMP HL S+LNFND+NFRIF  PL  A+
Sbjct: 349 EALIFPSDVKVDSLNNVWVISDRMPNHLLSKLNFNDINFRIFFAPLDAAL 398

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307178532|gb|EFN67221.1| Protein yellow [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350413914|ref|XP_003490152.1| PREDICTED: protein yellow-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340712146|ref|XP_003394625.1| PREDICTED: protein yellow-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383850349|ref|XP_003700758.1| PREDICTED: protein yellow-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|152002411|dbj|BAF73474.1| Yellow [Papilio xuthus] Back     alignment and taxonomy information
>gi|323505959|gb|ADX87343.1| yellow [Heliconius numata] Back     alignment and taxonomy information
>gi|296040341|dbj|BAJ07595.1| Yellow [Papilio polytes] Back     alignment and taxonomy information
>gi|380017835|ref|XP_003692850.1| PREDICTED: protein yellow-like [Apis florea] Back     alignment and taxonomy information
>gi|290578556|gb|ADD51174.1| yellow-like protein [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
FB|FBgn0004034 541 y "yellow" [Drosophila melanog 0.521 0.334 0.5 1.4e-46
FB|FBgn0041713438 yellow-c "yellow-c" [Drosophil 0.458 0.363 0.413 6.7e-43
FB|FBgn0038105452 yellow-f2 "yellow-f2" [Drosoph 0.518 0.398 0.383 1.3e-34
FB|FBgn0032601453 yellow-b "yellow-b" [Drosophil 0.478 0.366 0.381 1.7e-34
FB|FBgn0039896463 yellow-h "yellow-h" [Drosophil 0.515 0.386 0.335 1.8e-31
FB|FBgn0041710447 yellow-f "yellow-f" [Drosophil 0.518 0.402 0.340 1.3e-25
UNIPROTKB|Q8MZM5462 dce "Dopachrome conversion enz 0.487 0.365 0.306 6.7e-23
FB|FBgn0038150409 yellow-e3 "yellow-e3" [Drosoph 0.409 0.347 0.282 1.5e-10
FB|FBgn0041712432 yellow-d "yellow-d" [Drosophil 0.463 0.372 0.291 1.6e-10
FB|FBgn0034856412 yellow-d2 "yellow-d2" [Drosoph 0.475 0.400 0.275 3.5e-10
FB|FBgn0004034 y "yellow" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 93/186 (50%), Positives = 132/186 (70%)

Query:   158 NKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIAS 217
             NK+   SA SY  +     RG+FN+ G+ F W  EGIFG++L+P  +DG++ L F P+AS
Sbjct:   215 NKSWRFSAHSY--FFPDPLRGDFNVAGINFQWGEEGIFGMSLSPIRSDGYRTLYFSPLAS 272

Query:   218 HSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVG 277
             H +FAVSTR+LR++T  E  DSY+ +V + +RG + H TS VM  +GI  FNLID+NAVG
Sbjct:   273 HRQFAVSTRILRDETRTE--DSYHDFVALDERGPNSHTTSRVMSDDGIELFNLIDQNAVG 330

Query:   278 CWNSQYPYKPENIGHIDIDNEALIFPSDVKV-VGDDLWVISDRMPIHLESELNFNDVNFR 336
             CW+S  PY P+  G +D D+  L+FP+DVK+    ++WV+SDRMP+ L S+L+++D NFR
Sbjct:   331 CWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSDRMPVFLLSDLDYSDTNFR 390

Query:   337 IFTVPL 342
             I+T PL
Sbjct:   391 IYTAPL 396
GO:0005576 "extracellular region" evidence=IDA
GO:0048066 "developmental pigmentation" evidence=IEP;IMP;TAS
GO:0005737 "cytoplasm" evidence=IDA
GO:0042438 "melanin biosynthetic process" evidence=IMP
GO:0048067 "cuticle pigmentation" evidence=IGI;IMP
GO:0048065 "male courtship behavior, veined wing extension" evidence=IMP
GO:0006583 "melanin biosynthetic process from tyrosine" evidence=TAS
GO:0060179 "male mating behavior" evidence=IMP
GO:0070451 "cell hair" evidence=IDA
GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IGI
GO:0016853 "isomerase activity" evidence=IBA
FB|FBgn0041713 yellow-c "yellow-c" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0038105 yellow-f2 "yellow-f2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0032601 yellow-b "yellow-b" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0039896 yellow-h "yellow-h" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0041710 yellow-f "yellow-f" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q8MZM5 dce "Dopachrome conversion enzyme" [Anopheles gambiae (taxid:7165)] Back     alignment and assigned GO terms
FB|FBgn0038150 yellow-e3 "yellow-e3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0041712 yellow-d "yellow-d" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0034856 yellow-d2 "yellow-d2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
pfam03022285 pfam03022, MRJP, Major royal jelly protein 8e-54
pfam03022285 pfam03022, MRJP, Major royal jelly protein 1e-25
cd01644213 cd01644, RT_pepA17, RT_pepA17: Reverse transcripta 0.001
>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein Back     alignment and domain information 
 Score =  177 bits (452), Expect = 8e-54
 Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 5/173 (2%)

Query: 176 DRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAE 235
           D G+F I G +F    +GIFG+AL+P   DG + L FHP+AS   ++V T VLRN+T   
Sbjct: 113 DFGKFTIAGESFQL-DDGIFGLALSPRTPDG-RTLYFHPLASTRLYSVPTEVLRNETNWG 170

Query: 236 SADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDI 295
           +   Y  +  +GDR      T+  +D NG+L+F L+ +NAVGCWN+  PY   N+G +  
Sbjct: 171 NNAQYEDFKDLGDRN--TQSTALAVDPNGVLFFGLVGQNAVGCWNTSTPYSRANLGVVAR 228

Query: 296 DNEALIFPSDVKVVGDD-LWVISDRMPIHLESELNFNDVNFRIFTVPLQEAVR 347
           +++ L FPSD+K+  ++ LWV+S+RM   L ++L++++VNFRI    +   +R
Sbjct: 229 NSDTLQFPSDLKIDKEEYLWVLSNRMQKFLYNDLDYDEVNFRILGANVDLLIR 281

Royal jelly is the food of queen bee larvae, and is responsible for the high reproductive ability of the queen. Major royal jelly proteins make up around 90% of larval jelly proteins. This family also the sequence-related yellow protein of drosophila which controls pigmentation of the adult cuticle and larval mouth parts. Length = 285
>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein Back     alignment and domain information
>gnl|CDD|238822 cd01644, RT_pepA17, RT_pepA17: Reverse transcriptase (RTs) in retrotransposons Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 347
PF03022287 MRJP: Major royal jelly protein; InterPro: IPR0035 100.0
PF03022287 MRJP: Major royal jelly protein; InterPro: IPR0035 99.46
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 98.08
COG3386307 Gluconolactonase [Carbohydrate transport and metab 97.76
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 96.77
PLN02919 1057 haloacid dehalogenase-like hydrolase family protei 95.74
PF0308889 Str_synth: Strictosidine synthase; InterPro: IPR01 94.97
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 93.23
PF0005842 Ldl_recept_b: Low-density lipoprotein receptor rep 93.09
PLN02919 1057 haloacid dehalogenase-like hydrolase family protei 90.92
COG3386307 Gluconolactonase [Carbohydrate transport and metab 85.99
KOG4659|consensus 1899 85.9
KOG1520|consensus376 80.88
COG3211616 PhoX Predicted phosphatase [General function predi 80.84
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 Back     alignment and domain information 
Probab=100.00  E-value=2.6e-57  Score=434.53  Aligned_cols=253  Identities=36%  Similarity=0.723  Sum_probs=201.2

Q ss_pred             CccccCcEEEEEECCCCcEEEEEEcCCCCCCCCCccceEEEeecCCcccccccchhhhhhhcccccCCccceeeeceecC
Q psy11725          3 TKQICPYAIHVFDLKTDRRIRKYQFRPEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVLGIQWN   82 (347)
Q Consensus         3 ~~~~~~pkl~~~dl~td~~~~~~~~~~~~~~~~s~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (347)
                      ++|.|||||++|||+||+++|+|.||+++++++|+|+||+||.+++.                                 
T Consensus        28 ~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~---------------------------------   74 (287)
T PF03022_consen   28 PKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGN---------------------------------   74 (287)
T ss_dssp             TGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTT---------------------------------
T ss_pred             CCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCC---------------------------------
Confidence            34699999999999999999999999999999999999999998754                                 


Q ss_pred             CCCCeEEEEEcCCCcccccccccccceeceEEEEccCCceeeeecCCCCCCCCceeeeccCCCCcceeeeehhhcccccc
Q psy11725         83 PKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLA  162 (347)
Q Consensus        83 ~~~~~~~Yi~~~~d~~~~~~~i~~~~~~agivfdl~~dGi~giaL~p~~~~~~R~l~fhplas~~~f~v~t~vLr~~t~~  162 (347)
                       |+++||||   +          |....|+||||+. +|              ++|+    ..+..|.++          
T Consensus        75 -~~~~~aYI---t----------D~~~~glIV~dl~-~~--------------~s~R----v~~~~~~~~----------  111 (287)
T PF03022_consen   75 -CDDGFAYI---T----------DSGGPGLIVYDLA-TG--------------KSWR----VLHNSFSPD----------  111 (287)
T ss_dssp             -S-SEEEEE---E----------ETTTCEEEEEETT-TT--------------EEEE----EETCGCTTS----------
T ss_pred             -CcceEEEE---e----------CCCcCcEEEEEcc-CC--------------cEEE----EecCCccee----------
Confidence             78999999   8          4456799999998 65              6676    444444444          


Q ss_pred             ccccccccceeccCCcccccCCceeEecCCceeEEEeCCCCCCCceeeeEeecCCCcceeeehhhhcCCCccchhhhhcc
Q psy11725        163 ESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNA  242 (347)
Q Consensus       163 ~~~~~~~~f~~~g~rg~~s~~g~~~~~~~~GV~giaL~p~~~~g~w~LYf~~las~~~y~v~t~vL~n~~~~~~~~l~~~  242 (347)
                                  |.++.+...|..|.+ ++|++|++|+|....| ++||||||+|+++|+|+|++|+|++.++.+.+.++
T Consensus       112 ------------p~~~~~~i~g~~~~~-~dg~~gial~~~~~d~-r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~  177 (287)
T PF03022_consen  112 ------------PDAGPFTIGGESFQW-PDGIFGIALSPISPDG-RWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQ  177 (287)
T ss_dssp             -------------SSEEEEETTEEEEE-TTSEEEEEE-TTSTTS--EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT
T ss_pred             ------------ccccceeccCceEec-CCCccccccCCCCCCc-cEEEEEeCCCCcEEEEEHHHhhCcccccccccccc
Confidence                        666777888999998 9999999999977777 55999999999999999999999999875446789


Q ss_pred             eeeecccCCCCccceeEeccCccEeeccCCCCeeEEEcCCCCCCCCceeeEEecCCceecCcceEEcC---cEEEEEecC
Q psy11725        243 YVKIGDRGRDGHLTSHVMDHNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVVG---DDLWVISDR  319 (347)
Q Consensus       243 v~~lG~~g~~s~~~g~~~D~~G~Ly~~~v~~~aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~~---g~Lyv~snr  319 (347)
                      |+.+|+||  ++++|+++|.+|+|||+++++++|+||+++++|.++|+++|++|++.|+|||+++|++   |+|||++||
T Consensus       178 v~~lG~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  178 VQDLGDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             -EEEEE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             ceeccccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence            99999997  7999999999999999999999999999999999999999999976699999999995   999999999


Q ss_pred             CcccccCCCCCCcccEEEEEeechhhhC
Q psy11725        320 MPIHLESELNFNDVNFRIFTVPLQEAVR  347 (347)
Q Consensus       320 l~~~~~~~~d~~e~nfrI~r~~v~e~~~  347 (347)
                      ||++.+++++.+|+||||++++++|++|
T Consensus       256 l~~~~~~~~~~~e~nfri~~~~v~~~~~  283 (287)
T PF03022_consen  256 LQRFAYGNLNPDEVNFRIWRARVDELIK  283 (287)
T ss_dssp             --SSTGGG---SS-SEEEEES-HHHHHT
T ss_pred             chHhhccCCCCCccEEeEEEeCHHHHhc
Confidence            9999999999999999999999999986

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4659|consensus Back     alignment and domain information
>KOG1520|consensus Back     alignment and domain information
>COG3211 PhoX Predicted phosphatase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
3q6k_A381 Salivary Protein From Lutzomyia Longipalpis Length 1e-04
3q6p_A381 Salivary Protein From Lutzomyia Longipalpis. Seleno 3e-04
>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis Length = 381 Back     alignment and structure 
Iteration: 1

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 81/174 (46%), Gaps = 15/174 (8%)
Query: 179 EFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESAD 238
           +F+ GG  +  F  GIFGI L   +++G +   +   ++   ++V+T+ L+ K    + +
Sbjct: 208 KFDYGGKEYE-FKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPE 266
Query: 239 SYNAYVKIGDRGRDGHLTSHVMD-HNGILYFNLIDRNAVGCWNSQYPYKPENIGHIDI-- 295
                  +G+RG+     +   D    +++F   +   V CWN+Q    P  + + D+  
Sbjct: 267 L------LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQ--KMPLRMKNTDVVY 318
Query: 296 DNEALIFPSDVKV-VGDDLWVISDRM-PIHLESELNFNDVNFRIFTV-PLQEAV 346
            +   +F +D+ V     LW +S+   PI    +  ++   +R+  +   QEA+
Sbjct: 319 TSSRFVFGTDISVDSKGGLWFMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQEAI 372
>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis. Selenomethionine Derivative Length = 381 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
3q6k_A381 43.2 kDa salivary protein; beta propeller, binding 7e-41
3q6k_A381 43.2 kDa salivary protein; beta propeller, binding 3e-18
2qe8_A343 Uncharacterized protein; structural genomics, join 4e-17
2qe8_A343 Uncharacterized protein; structural genomics, join 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* Length = 381 Back     alignment and structure
 Score =  146 bits (369), Expect = 7e-41
 Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 11/183 (6%)

Query: 169 NAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVL 228
           +   K     +F+ GG  + +   GIFGI L   +++G +   +   ++   ++V+T+ L
Sbjct: 198 HPTFKAERPTKFDYGGKEYEF-KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKEL 256

Query: 229 RNKTLAESADSYNAYVKIGDRGRDGHLTSH-VMDHNGILYFNLIDRNAVGCWNSQYPYKP 287
           + K    + +       +G+RG+     +        +++F   +   V CWN+Q     
Sbjct: 257 KQKGGKLNPEL------LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLR 310

Query: 288 ENIGHIDIDNEALIFPSDVKVVGDD-LWVISDRMPIHLESE-LNFNDVNFRIFTV-PLQE 344
                +   +   +F +D+ V     LW +S+  P   +SE   ++   +R+  +   QE
Sbjct: 311 MKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQE 370

Query: 345 AVR 347
           A+ 
Sbjct: 371 AIA 373
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* Length = 381 Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Length = 343 Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Length = 343 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
3q6k_A381 43.2 kDa salivary protein; beta propeller, binding 100.0
2qe8_A343 Uncharacterized protein; structural genomics, join 99.94
3q6k_A381 43.2 kDa salivary protein; beta propeller, binding 99.56
3v65_B386 Low-density lipoprotein receptor-related protein; 97.61
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 97.59
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 97.58
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 97.5
2p4o_A306 Hypothetical protein; putative lactonase, structur 97.48
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 97.47
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 97.46
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 97.46
3p5b_L400 Low density lipoprotein receptor variant; B-propel 97.39
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 97.19
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 97.12
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 96.94
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 96.9
3kya_A496 Putative phosphatase; structural genomics, joint c 96.89
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 96.75
3sov_A318 LRP-6, low-density lipoprotein receptor-related pr 96.75
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 96.69
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 96.66
2p9w_A334 MAL S 1 allergenic protein; beta propeller; 1.35A 96.58
3qqz_A255 Putative uncharacterized protein YJIK; MCSG, PSI-2 96.57
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 96.55
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 96.41
4a0p_A 628 LRP6, LRP-6, low-density lipoprotein receptor-rela 96.4
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 96.38
2qe8_A343 Uncharacterized protein; structural genomics, join 96.38
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 96.35
3v65_B386 Low-density lipoprotein receptor-related protein; 96.29
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 96.23
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 96.19
3p5b_L 400 Low density lipoprotein receptor variant; B-propel 95.98
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 95.96
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 95.9
3sov_A 318 LRP-6, low-density lipoprotein receptor-related pr 95.77
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 95.71
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 95.57
3s94_A619 LRP-6, low-density lipoprotein receptor-related pr 95.49
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 95.48
2fp8_A322 Strictosidine synthase; six bladed beta propeller 95.47
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.47
3dsm_A 328 Uncharacterized protein bacuni_02894; seven_blated 95.42
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 95.32
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 95.29
4a0p_A 628 LRP6, LRP-6, low-density lipoprotein receptor-rela 95.2
1n7d_A 699 LDL receptor, low-density lipoprotein receptor; fa 95.19
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 95.08
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 95.07
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 94.95
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 94.87
1ijq_A 316 LDL receptor, low-density lipoprotein receptor; be 94.77
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 94.51
3kya_A496 Putative phosphatase; structural genomics, joint c 94.48
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 94.07
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 93.99
3s94_A 619 LRP-6, low-density lipoprotein receptor-related pr 93.69
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 93.5
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 93.4
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 93.32
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 93.04
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 92.55
1cru_A 454 Protein (soluble quinoprotein glucose dehydrogena; 92.45
2ism_A 352 Putative oxidoreductase; BL41XU spring-8, bladed b 92.26
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 91.77
3a9g_A 354 Putative uncharacterized protein; PQQ dependent de 91.46
2fp8_A322 Strictosidine synthase; six bladed beta propeller 90.95
2p4o_A 306 Hypothetical protein; putative lactonase, structur 89.82
3das_A347 Putative oxidoreductase; aldose sugar dehydrogenas 89.8
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 89.68
3sre_A355 PON1, serum paraoxonase; directed evolution, 6-bla 89.56
3dr2_A 305 Exported gluconolactonase; gluconolactonase SMP-30 89.45
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 88.65
1fwx_A 595 Nitrous oxide reductase; beta-propeller domain, cu 88.12
2g8s_A 353 Glucose/sorbosone dehydrogenases; bladed beta-prop 87.49
3e5z_A 296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 86.87
2dg1_A 333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 85.34
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 84.52
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 84.25
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 83.8
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 83.41
3sre_A355 PON1, serum paraoxonase; directed evolution, 6-bla 83.4
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 80.53
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* Back     alignment and structure
Probab=100.00  E-value=7.3e-55  Score=430.51  Aligned_cols=250  Identities=22%  Similarity=0.411  Sum_probs=219.6

Q ss_pred             Ccc---ccCcEEEEEECCCC--cEEEEEEcCCCCCCCCCccceEEEeecCCcccccccchhhhhhhcccccCCccceeee
Q psy11725          3 TKQ---ICPYAIHVFDLKTD--RRIRKYQFRPEDILPGTFIANIAVDFASNNLDILKSIPEEQRMLSEVEWGSDSYLKVL   77 (347)
Q Consensus         3 ~~~---~~~pkl~~~dl~td--~~~~~~~~~~~~~~~~s~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (347)
                      +.|   .|+|||++|||+||  +++|+|.||++++.++|+|+||+||+.+..                            
T Consensus       114 ~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~----------------------------  165 (381)
T 3q6k_A          114 GAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK----------------------------  165 (381)
T ss_dssp             TGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT----------------------------
T ss_pred             ccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC----------------------------
Confidence            457   99999999999999  999999999999999999999999954310                            


Q ss_pred             ceecCCCCCeEEEEEcCCCcccccccccccceeceEEEEccCCceeeeecCCCCCCCCceeeeccCCCCcceeeeehhhc
Q psy11725         78 GIQWNPKEDTFSFCVNLSDTKCSKRSILSEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLR  157 (347)
Q Consensus        78 ~~~~~~~~~~~~Yi~~~~d~~~~~~~i~~~~~~agivfdl~~dGi~giaL~p~~~~~~R~l~fhplas~~~f~v~t~vLr  157 (347)
                          ..|+++||||   +          |....|+||||+. +|              ++|+    ..|..|.++     
T Consensus       166 ----~~c~~~~aYI---t----------D~~~~gLIVydl~-~~--------------~swR----v~~~~~~pd-----  204 (381)
T 3q6k_A          166 ----GDCSETFVYI---T----------NFLRGALFIYDHK-KQ--------------DSWN----VTHPTFKAE-----  204 (381)
T ss_dssp             ----TTSCSEEEEE---E----------ETTTTEEEEEETT-TT--------------EEEE----EECGGGSCC-----
T ss_pred             ----CCCCccEEEE---E----------cCCCCcEEEEECC-CC--------------cEEE----EccCCCccc-----
Confidence                0288999999   8          4457899999998 65              6666    333333332     


Q ss_pred             cccccccccccccceeccCCcccccCCceeEecCCceeEEEeCCCCCCCceeeeEeecCCCcceeeehhhhcCCCccchh
Q psy11725        158 NKTLAESADSYNAYVKIGDRGEFNIGGLTFHWFPEGIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESA  237 (347)
Q Consensus       158 ~~t~~~~~~~~~~f~~~g~rg~~s~~g~~~~~~~~GV~giaL~p~~~~g~w~LYf~~las~~~y~v~t~vL~n~~~~~~~  237 (347)
                                        ..+.+.++|..|.+ ++|++||||+|+...|.++||||||+|+++|+|+|++|+|+++    
T Consensus       205 ------------------~~~~~~i~G~~~~~-~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~----  261 (381)
T 3q6k_A          205 ------------------RPTKFDYGGKEYEF-KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGG----  261 (381)
T ss_dssp             ------------------SCEEEEETTEEEEE-CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTC----
T ss_pred             ------------------cCcceEECCEEeEe-ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcch----
Confidence                              12446678999998 8999999999987776678999999999999999999999764    


Q ss_pred             hhhcceeeecccCCCCccceeEec-cCccEeeccCCCCeeEEEcCCC-CCCCCceeeEEecCCceecCcceEEc-CcEEE
Q psy11725        238 DSYNAYVKIGDRGRDGHLTSHVMD-HNGILYFNLIDRNAVGCWNSQY-PYKPENIGHIDIDNEALIFPSDVKVV-GDDLW  314 (347)
Q Consensus       238 ~l~~~v~~lG~~g~~s~~~g~~~D-~~G~Ly~~~v~~~aI~cwn~~~-~~~~~~~~~l~~d~~~l~wpd~~~i~-~g~Ly  314 (347)
                        ..+|+.+|+||..+++.++++| .+|+|||+++++++|+|||+++ +|.++|+++|++|+ +|+|||+++|+ +|+||
T Consensus       262 --~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lw  338 (381)
T 3q6k_A          262 --KLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLW  338 (381)
T ss_dssp             --CCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEE
T ss_pred             --hhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEE
Confidence              4789999999977888999998 8999999999999999999999 99999999999996 99999999999 99999


Q ss_pred             EEecCCcccccCCC-CCCcccEEEEEe-echhhhC
Q psy11725        315 VISDRMPIHLESEL-NFNDVNFRIFTV-PLQEAVR  347 (347)
Q Consensus       315 v~snrl~~~~~~~~-d~~e~nfrI~r~-~v~e~~~  347 (347)
                      |++||||+|+++++ |.+++||||||+ +++|+|+
T Consensus       339 v~sn~l~~~~~g~l~d~~~~nfrI~r~~~~~~~i~  373 (381)
T 3q6k_A          339 FMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQEAIA  373 (381)
T ss_dssp             EEECSCCSSTTGGGCCCSSCSEEEEEESCHHHHHT
T ss_pred             EEECcchHhhcCCcCCCCcCCEEEEEecCHHHHhc
Confidence            99999999999998 999999999999 9999986
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} Back     alignment and structure
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A Back     alignment and structure
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 97.98
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 97.79
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 97.74
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 97.33
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 97.11
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 96.87
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 96.56
d1npea_263 Nidogen {Mouse (Mus musculus) [TaxId: 10090]} 96.44
d1ijqa1266 Low density lipoprotein (LDL) receptor {Human (Hom 96.31
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 96.09
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 95.61
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 95.48
d1npea_263 Nidogen {Mouse (Mus musculus) [TaxId: 10090]} 94.92
d1ijqa1266 Low density lipoprotein (LDL) receptor {Human (Hom 94.79
d2p4oa1 302 Hypothetical protein All0351 homologue {Nostoc pun 94.56
d1pjxa_ 314 Diisopropylfluorophosphatase (phosphotriesterase, 93.71
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 90.33
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 88.77
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 83.39
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.98  E-value=0.00031  Score=63.93  Aligned_cols=113  Identities=10%  Similarity=0.058  Sum_probs=71.8

Q ss_pred             ceeEEEeCCCCCCCceeeeEeecCCCcceeeehhhhcCCCccchhhhhcceeeecccCCCCccceeEeccCccEeeccCC
Q psy11725        193 GIFGIALTPPEADGFKNLLFHPIASHSEFAVSTRVLRNKTLAESADSYNAYVKIGDRGRDGHLTSHVMDHNGILYFNLID  272 (347)
Q Consensus       193 GV~giaL~p~~~~g~w~LYf~~las~~~y~v~t~vL~n~~~~~~~~l~~~v~~lG~~g~~s~~~g~~~D~~G~Ly~~~v~  272 (347)
                      .-+||++++++......||+.--...+.|+.+..  .+.....    ...+..+... .....+|+++|.+|+||+++..
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~--~~g~~~~----~~~~~~~~~~-~~~~pdGiavD~~GnlyVa~~~  245 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK--GPAKIEN----KKVWGHIPGT-HEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE--ETTEEEE----EEEEEECCCC-SSCEEEEEEEBTTCCEEEEEET
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeecc--Cccccce----eeEEEEcccc-ccccceeeEEecCCcEEEEEcC
Confidence            3468888876533345688877677777776531  1211111    0111111111 1235689999999999999999


Q ss_pred             CCeeEEEcCCCCCCCCceeeEEecCCceecCcceEEc-Cc-EEEEEec
Q psy11725        273 RNAVGCWNSQYPYKPENIGHIDIDNEALIFPSDVKVV-GD-DLWVISD  318 (347)
Q Consensus       273 ~~aI~cwn~~~~~~~~~~~~l~~d~~~l~wpd~~~i~-~g-~Lyv~sn  318 (347)
                      .+.|.+++|++..    ....+..+  ..+|.++.++ ++ .|||++.
T Consensus       246 ~g~I~~~dp~~g~----~~~~i~~p--~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         246 SSHIEVFGPDGGQ----PKMRIRCP--FEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             TTEEEEECTTCBS----CSEEEECS--SSCEEEEEECTTSSEEEEEET
T ss_pred             CCEEEEEeCCCCE----EEEEEECC--CCCEEEEEEeCCCCEEEEEEC
Confidence            9999999998642    12333332  3689999998 65 7999974
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure