Psyllid ID: psy11730

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MVSTSETSKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLKTR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHccccccccccccccccEEEEccccccHHHHHHHHccccccEEEEcccccccccccccHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccEEcccccccccccccccEEccccccccccccccccEEEHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHccccEEEEEcccHHHHHHHcHHcccccccccccEEEEccccccHHHHHHcccEEEEccccEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEccccEEEEEEcccEEEEEEcccccccHHHHHHHHHccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHccccccccccHHccccccccccccccccccEEccccccHHHHHHHHccccccEEEEcccccccHHHcccHHHHHHHHcccEEEEcccccccccccHEEHHHHHHccccccccccccHHHHHHHccccHHHHHHHHHHcccccccccEEEEEcccccccccccccccccHHHHHHHccccEEEccccccccEEEccccccccccccEEEEEEEEEEcccccccHHHEEcccccEEEcccEcccEEEEHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHccccEEEEEcccHHHHHHcccccEEEccccccEEEEEcccHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHHHcHHHcccccccccccEEEEEccccEEEEcccEEEEEEEcccEEEEEEcccccccccHHHHHHHcccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvstsetskVLDSRARKRIKETKkrarpelngkdawfelgyadkfdkfkIVKENverihvkdyspqefiekyekpnkpvviKGVTENWNATYKWTLEKLGKKYrnqkfkcgednhgysklgkkyrnqkfkcgednhgyshprrkkllddyevpiyfqddlfqyagedkrppyrwfvmgparsgtgihidplgtnpddgdvkddspaveskefkpiDEILTNIISELGKQVENLTSVSNikllrtplfeyetfvnishtdlkpnvyeggyKIWECTFDLLNFIkdnvavdklsvldvgcgagLLGLYTLMNgaahvsfqdYNQEVIEsltlpnilmntdnlekckfyhgdwgslsAVIHSKFDIILTSETIYSVANYNKLLTVwclfpthtpkdllkvtsaeggkqrdEAITWFSIiyprtqlpswptewkplelvqgpgetvfvpggwWHVVLNLDTTVAVTQNfcshtnfpvvyhktirgrpklsKKWYRKLKTR
Flexible Loop (DISEMBL)
mvstsetskvldsrarkriketkkrarpelngkdawfelgyadKFDKFKIVKEnverihvkdyspqefiekyekpnkpvviKGVTENWNATYKWTLEKLGKKYRNQKfkcgednhgysklgKKYRNQKFkcgednhgyshprrkKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDDSpaveskefkpidEILTNIISELGKQVENLTSVSNIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVtsaeggkqrdEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCshtnfpvvyhktirgrpklskkwyrklktr
Low Complexity Region (SEG)
MVSTSETSKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLKTR
Disordered region (IsUnstruct)
********************************KDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHI*************************PIDEILTNIISELGKQVENLTSVSNIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWY******
Disordered Region (DISOPRED)
******************************NGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK**
Disordered Region (DISEMBL)
***************************PELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKK********
Disordered Region (DISPRO)
******************IKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLKT*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSTSETSKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLKTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
Q9VD28	408	Bifunctional arginine dem	yes	N/A	0.370	0.450	0.569	1e-57
Q6Q4H1	385	Bifunctional arginine dem	N/A	N/A	0.370	0.477	0.530	1e-52
Q58DS6	403	Bifunctional arginine dem	yes	N/A	0.120	0.148	0.794	1e-51
Q6AYK2	403	Bifunctional arginine dem	yes	N/A	0.120	0.148	0.785	2e-51
Q9ERI5	403	Bifunctional arginine dem	yes	N/A	0.120	0.148	0.785	2e-51
Q5R6G2	403	Bifunctional arginine dem	yes	N/A	0.120	0.148	0.785	2e-51
Q6NYC1	403	Bifunctional arginine dem	yes	N/A	0.120	0.148	0.785	2e-51
Q6GND3	403	Bifunctional arginine dem	N/A	N/A	0.120	0.148	0.785	6e-51
Q5ZMK5	414	Bifunctional arginine dem	yes	N/A	0.120	0.144	0.776	1e-50
Q6PFM0	403	Bifunctional arginine dem	yes	N/A	0.120	0.148	0.767	1e-50

>sp|Q9VD28|JMJD6_DROME Bifunctional arginine demethylase and lysyl-hydroxylase PSR OS=Drosophila melanogaster GN=PSR PE=2 SV=1

 Score =  224 bits (572), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 137/193 (70%), Gaps = 9/193 (4%)

Query: 11  LDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIE 70
           L  R+RKR +E K++ARPEL+G++AW  + Y +KF+ F    +N+ERI        EFIE
Sbjct: 7   LPKRSRKRTREVKRKARPELDGENAWSAMRYCEKFEPFWDFTDNLERIEESQVPESEFIE 66

Query: 71  KYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKF 129
           ++E+P KPVVI+G T+ W A  KWTL +L KKYRNQKFKCGEDN GYS K+  KY  +  
Sbjct: 67  RFERPYKPVVIRGCTDGWLALEKWTLARLAKKYRNQKFKCGEDNEGYSVKMKMKYYVEYM 126

Query: 130 KCGEDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPAR 181
           +   D+            H RR+KLLDDY VP YF+DDLFQY GE++RPPYRWFVMGPAR
Sbjct: 127 QSTRDDSPLYIFDSSFGEHHRRRKLLDDYVVPKYFRDDLFQYCGENRRPPYRWFVMGPAR 186

Query: 182 SGTGIHIDPLGTN 194
           SGTGIHIDPLGT+
Sbjct: 187 SGTGIHIDPLGTS 199

Dioxygenase that can both act as a histone arginine demethylase and a lysyl-hydroxylase.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp|Q6Q4H1|JMJD6_HYDVU Bifunctional arginine demethylase and lysyl-hydroxylase PSR OS=Hydra vulgaris GN=PSR PE=1 SV=1

 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/194 (53%), Positives = 132/194 (68%), Gaps = 10/194 (5%)

Query: 11  LDSRARKRIKETKKRARPELNGKDAWFELGYADKFD-KFKIVKENVERIHVKDYSPQEFI 69
           +D R    ++ETK +ARPEL G + W  LGYA+ FD  ++ +K+ + RIH K  S  EFI
Sbjct: 1   MDKRTDDAVRETKLKARPELKGDEGWTRLGYANNFDLSYQHIKDTLPRIHCKSISHDEFI 60

Query: 70  EKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQK 128
            +YEKP  PV++ G T++W A  KW L  L KKYRNQKFK GEDN G+S K+  KY  + 
Sbjct: 61  ARYEKPRIPVILTGCTDSWLANQKWKLSSLAKKYRNQKFKVGEDNDGFSVKMKMKYYIEY 120

Query: 129 FKCGEDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPA 180
            K  +D+            HP+++KLLDDY  P +FQDDLF+YAGE +RPPYRW V+GPA
Sbjct: 121 LKHQKDDSPLYIFDGSYGEHPKKRKLLDDYHPPSFFQDDLFKYAGEKRRPPYRWIVIGPA 180

Query: 181 RSGTGIHIDPLGTN 194
           RSGTGIHIDPLGT+
Sbjct: 181 RSGTGIHIDPLGTS 194

Dioxygenase that can both act as a histone arginine demethylase and a lysyl-hydroxylase.

Hydra vulgaris (taxid: 6087)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q58DS6|JMJD6_BOVIN Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Bos taurus GN=JMJD6 PE=2 SV=1

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 103/112 (91%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
           WCLFPT TP++L+KVT  EGG Q+DEAITWF+IIYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 206 WCLFPTSTPRELIKVTREEGGNQQDEAITWFNIIYPRTQLPTWPPEFKPLEILQKPGETV 265

Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
           FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 266 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILK 317

Dioxygenase that can both act as a histone arginine demethylase and a lysyl-hydroxylase. Acts as a lysyl-hydroxylase that catalyzes 5-hydroxylation on specific lysine residues of target proteins such as U2AF2/U2AF65 and LUC7L2. Acts as a regulator of RNA splicing by mediating 5-hydroxylation of U2AF2/U2AF65, affecting the pre-mRNA splicing activity of U2AF2/U2AF65. In addition to peptidyl-lysine 5-dioxygenase activity, may act as a RNA hydroxylase, as suggested by its ability to bind single strand RNA. Also acts as an arginine demethylase which demethylates histone H3 at 'Arg-2' (H3R2me) and histone H4 at 'Arg-3' (H4R3me), thereby playing a role in histone code. However, histone arginine demethylation may not constitute the primary activity in vivo. Has no histone lysine demethylase activity. Required for differentiation of multiple organs during embryogenesis. Acts as a key regulator of hematopoietic differentiation: required for angiogenic sprouting by regulating the pre-mRNA splicing activity of U2AF2/U2AF65. Seems to be necessary for the regulation of macrophage cytokine responses.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q6AYK2|JMJD6_RAT Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Rattus norvegicus GN=Jmjd6 PE=2 SV=2

 Score =  204 bits (518), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 104/112 (92%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
           WCLFPT+TP++L+KVT  EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 206 WCLFPTNTPRELIKVTREEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 265

Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
           FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 266 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILK 317

Dioxygenase that can both act as a histone arginine demethylase and a lysyl-hydroxylase. Acts as a lysyl-hydroxylase that catalyzes 5-hydroxylation on specific lysine residues of target proteins such as U2AF2/U2AF65 and LUC7L2. Acts as a regulator of RNA splicing by mediating 5-hydroxylation of U2AF2/U2AF65, affecting the pre-mRNA splicing activity of U2AF2/U2AF65. In addition to peptidyl-lysine 5-dioxygenase activity, may act as a RNA hydroxylase, as suggested by its ability to bind single strand RNA. Also acts as an arginine demethylase which demethylates histone H3 at 'Arg-2' (H3R2me) and histone H4 at 'Arg-3' (H4R3me), thereby playing a role in histone code. However, histone arginine demethylation may not constitute the primary activity in vivo. Has no histone lysine demethylase activity. Required for differentiation of multiple organs during embryogenesis. Acts as a key regulator of hematopoietic differentiation: required for angiogenic sprouting by regulating the pre-mRNA splicing activity of U2AF2/U2AF65. Seems to be necessary for the regulation of macrophage cytokine responses.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9ERI5|JMJD6_MOUSE Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Mus musculus GN=Jmjd6 PE=1 SV=2

 Score =  204 bits (518), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 104/112 (92%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
           WCLFPT+TP++L+KVT  EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 206 WCLFPTNTPRELIKVTREEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 265

Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
           FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 266 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILK 317

Dioxygenase that can both act as a histone arginine demethylase and a lysyl-hydroxylase. Acts as a lysyl-hydroxylase that catalyzes 5-hydroxylation on specific lysine residues of target proteins such as U2AF2/U2AF65 and LUC7L2. Acts as a regulator of RNA splicing by mediating 5-hydroxylation of U2AF2/U2AF65, affecting the pre-mRNA splicing activity of U2AF2/U2AF65. In addition to peptidyl-lysine 5-dioxygenase activity, may act as a RNA hydroxylase, as suggested by its ability to bind single strand RNA. Also acts as an arginine demethylase which demethylates histone H3 at 'Arg-2' (H3R2me) and histone H4 at 'Arg-3' (H4R3me), thereby playing a role in histone code. However, histone arginine demethylation may not constitute the primary activity in vivo. Has no histone lysine demethylase activity. Required for differentiation of multiple organs during embryogenesis. Acts as a key regulator of hematopoietic differentiation: required for angiogenic sprouting by regulating the pre-mRNA splicing activity of U2AF2/U2AF65. Seems to be necessary for the regulation of macrophage cytokine responses.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q5R6G2|JMJD6_PONAB Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Pongo abelii GN=JMJD6 PE=2 SV=1

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 103/112 (91%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
           WCLFPT TP++L+KVT  EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 206 WCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 265

Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
           FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 266 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILK 317

Dioxygenase that can both act as a histone arginine demethylase and a lysyl-hydroxylase. Acts as a lysyl-hydroxylase that catalyzes 5-hydroxylation on specific lysine residues of target proteins such as U2AF2/U2AF65 and LUC7L2. Acts as a regulator of RNA splicing by mediating 5-hydroxylation of U2AF2/U2AF65, affecting the pre-mRNA splicing activity of U2AF2/U2AF65. In addition to peptidyl-lysine 5-dioxygenase activity, may act as a RNA hydroxylase, as suggested by its ability to bind single strand RNA. Also acts as an arginine demethylase which demethylates histone H3 at 'Arg-2' (H3R2me) and histone H4 at 'Arg-3' (H4R3me), thereby playing a role in histone code. However, histone arginine demethylation may not constitute the primary activity in vivo. Has no histone lysine demethylase activity. Required for differentiation of multiple organs during embryogenesis. Acts as a key regulator of hematopoietic differentiation: required for angiogenic sprouting by regulating the pre-mRNA splicing activity of U2AF2/U2AF65. Seems to be necessary for the regulation of macrophage cytokine responses.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q6NYC1|JMJD6_HUMAN Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Homo sapiens GN=JMJD6 PE=1 SV=1

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 103/112 (91%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
           WCLFPT TP++L+KVT  EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 206 WCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 265

Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
           FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 266 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILK 317

Dioxygenase that can both act as a histone arginine demethylase and a lysyl-hydroxylase. Acts as a lysyl-hydroxylase that catalyzes 5-hydroxylation on specific lysine residues of target proteins such as U2AF2/U2AF65 and LUC7L2. Acts as a regulator of RNA splicing by mediating 5-hydroxylation of U2AF2/U2AF65, affecting the pre-mRNA splicing activity of U2AF2/U2AF65. In addition to peptidyl-lysine 5-dioxygenase activity, may act as a RNA hydroxylase, as suggested by its ability to bind single strand RNA. Also acts as an arginine demethylase which demethylates histone H3 at 'Arg-2' (H3R2me) and histone H4 at 'Arg-3' (H4R3me), thereby playing a role in histone code. However, histone arginine demethylation may not constitute the primary activity in vivo. Has no histone lysine demethylase activity. Required for differentiation of multiple organs during embryogenesis. Acts as a key regulator of hematopoietic differentiation: required for angiogenic sprouting by regulating the pre-mRNA splicing activity of U2AF2/U2AF65. Seems to be necessary for the regulation of macrophage cytokine responses.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q6GND3|JMD6A_XENLA Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-A OS=Xenopus laevis GN=jmjd6-a PE=2 SV=1

 Score =  202 bits (513), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 103/112 (91%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
           WCLFPT+TP++L+KVT  EGG Q+DEAITWF++IYPRTQLPSWP E+KPLE++Q PGETV
Sbjct: 206 WCLFPTNTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPSWPPEFKPLEILQKPGETV 265

Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
           FVPGGWWHVVLNLDT +AVTQNF S +NFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 266 FVPGGWWHVVLNLDTAIAVTQNFASCSNFPVVWHKTVRGRPKLSRKWYRILK 317

Dioxygenase that can both act as a histone arginine demethylase and a lysyl-hydroxylase. Acts as a lysyl-hydroxylase that catalyzes 5-hydroxylation on specific lysine residues of target proteins such as u2af2/u2af65. Acts as a regulator of RNA splicing by mediating 5-hydroxylation of u2af2/u2af65, affecting the pre-mRNA splicing activity of u2af2/u2af65. In addition to peptidyl-lysine 5-dioxygenase activity, may act as a RNA hydroxylase, as suggested by its ability to bind single strand RNA. Also acts as an arginine demethylase which demethylates histone H3 at 'Arg-2' (H3R2me) and histone H4 at 'Arg-3' (H4R3me), thereby playing a role in histone code. However, histone arginine demethylation may not constitute the primary activity in vivo. Has no histone lysine demethylase activity. Required for differentiation of multiple organs during embryogenesis. Acts as a key regulator of hematopoietic differentiation.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q5ZMK5|JMJD6_CHICK Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Gallus gallus GN=JMJD6 PE=2 SV=1

 Score =  201 bits (511), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 87/112 (77%), Positives = 102/112 (91%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
           WCLFPT TP++L+KV   EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 206 WCLFPTSTPRELIKVAREEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 265

Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
           FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 266 FVPGGWWHVVLNLDTTIAITQNFASCTNFPVVWHKTVRGRPKLSRKWYRILK 317

Dioxygenase that can both act as a histone arginine demethylase and a lysyl-hydroxylase. Acts as a lysyl-hydroxylase that catalyzes 5-hydroxylation on specific lysine residues of target proteins such as U2AF2/U2AF65. Acts as a regulator of RNA splicing by mediating 5-hydroxylation of U2AF2/U2AF65, affecting the pre-mRNA splicing activity of U2AF2/U2AF65. In addition to peptidyl-lysine 5-dioxygenase activity, may act as a RNA hydroxylase, as suggested by its ability to bind single strand RNA. Also acts as an arginine demethylase which demethylates histone H3 at 'Arg-2' (H3R2me) and histone H4 at 'Arg-3' (H4R3me), thereby playing a role in histone code. However, histone arginine demethylation may not constitute the primary activity in vivo. Has no histone lysine demethylase activity. Required for differentiation of multiple organs during embryogenesis. Acts as a key regulator of hematopoietic differentiation.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q6PFM0|JMJD6_DANRE Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Danio rerio GN=jmjd6 PE=2 SV=2

 Score =  201 bits (510), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 102/112 (91%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
           WCLFPTHTP++L+KVT  EGG Q+DEAITWF++IYPRTQ  +WP E++PLE++Q PGETV
Sbjct: 206 WCLFPTHTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQQSTWPDEFRPLEILQRPGETV 265

Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
           FVPGGWWHVVLNLDTT+AVTQNF S TNFP+V+HKT+RGRPKLS+KWYR LK
Sbjct: 266 FVPGGWWHVVLNLDTTIAVTQNFASTTNFPIVWHKTVRGRPKLSRKWYRILK 317

Dioxygenase that can both act as a histone arginine demethylase and a lysyl-hydroxylase. Acts as a lysyl-hydroxylase that catalyzes 5-hydroxylation on specific lysine residues of target proteins such as u2af2/u2af65. Acts as a regulator of RNA splicing by mediating 5-hydroxylation of u2af2/u2af65, affecting the pre-mRNA splicing activity of u2af2/u2af65. In addition to peptidyl-lysine 5-dioxygenase activity, may act as a RNA hydroxylase, as suggested by its ability to bind single strand RNA. Also acts as an arginine demethylase which demethylates histone H3 at 'Arg-2' (H3R2me) and histone H4 at 'Arg-3' (H4R3me), thereby playing a role in histone code. However, histone arginine demethylation may not constitute the primary activity in vivo. Has no histone lysine demethylase activity. Required for differentiation of multiple organs during embryogenesis. Acts as a key regulator of hematopoietic differentiation.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
157117910	395	phosphatidylserine receptor [Aedes aegyp	0.389	0.488	0.603	3e-63
157136728	289	phosphatidylserine receptor [Aedes aegyp	0.389	0.667	0.603	7e-63
328711877	389	PREDICTED: bifunctional arginine demethy	0.364	0.465	0.626	2e-61
380025056	392	PREDICTED: bifunctional arginine demethy	0.473	0.599	0.534	3e-60
328781689	392	PREDICTED: bifunctional arginine demethy	0.473	0.599	0.534	4e-60
340713950	392	PREDICTED: bifunctional arginine demethy	0.370	0.469	0.621	7e-60
350421147	392	PREDICTED: bifunctional arginine demethy	0.370	0.469	0.621	8e-60
383863665	392	PREDICTED: bifunctional arginine demethy	0.473	0.599	0.526	2e-59
332027374	384	Bifunctional arginine demethylase and ly	0.473	0.611	0.522	7e-59
345495333	392	PREDICTED: bifunctional arginine demethy	0.370	0.469	0.611	1e-58

>gi|157117910|ref|XP_001653096.1| phosphatidylserine receptor [Aedes aegypti] gi|157117912|ref|XP_001653097.1| phosphatidylserine receptor [Aedes aegypti] gi|108875937|gb|EAT40162.1| AAEL008084-PA [Aedes aegypti] gi|108875938|gb|EAT40163.1| AAEL008084-PB [Aedes aegypti]

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 152/202 (75%), Gaps = 9/202 (4%)

Query: 2   VSTSETSKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVK 61
           +S +E    L  R RKR++E K++ARPEL  K AW +L Y  KFDKF+  ++NVERIHVK
Sbjct: 1   MSLNEGEVKLSHRTRKRVREVKRKARPELADKSAWVQLEYHRKFDKFREFEDNVERIHVK 60

Query: 62  DYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KL 120
           D SP+EFIE++E   KPVVI+G+TE W A YKWTLE+L KKYRNQKFKCGEDN GYS K+
Sbjct: 61  DVSPREFIERFESIYKPVVIEGITEGWKAEYKWTLERLAKKYRNQKFKCGEDNDGYSVKM 120

Query: 121 GKKYRNQKFKCGEDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPY 172
             KY  +  +   D+            H RRKKLL+DY++P+YF+DDLF++AGE++RPPY
Sbjct: 121 KMKYYIEYMRNTTDDSPLYIFDSSFGEHHRRKKLLEDYDIPLYFRDDLFKHAGEERRPPY 180

Query: 173 RWFVMGPARSGTGIHIDPLGTN 194
           RWFVMGPARSGTGIHIDPLGT+
Sbjct: 181 RWFVMGPARSGTGIHIDPLGTS 202

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157136728|ref|XP_001656895.1| phosphatidylserine receptor [Aedes aegypti] gi|108869876|gb|EAT34101.1| AAEL013632-PA [Aedes aegypti]

 Score =  248 bits (632), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 152/202 (75%), Gaps = 9/202 (4%)

Query: 2   VSTSETSKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVK 61
           +S +E    L  R RKR++E K++ARPEL  K AW +L Y  KFDKF+  ++NVERIHVK
Sbjct: 1   MSLNEGEVKLSHRTRKRVREVKRKARPELADKSAWVQLEYHRKFDKFREFEDNVERIHVK 60

Query: 62  DYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KL 120
           D SP+EFIE++E   KPVVI+G+TE W A YKWTLE+L KKYRNQKFKCGEDN GYS K+
Sbjct: 61  DVSPREFIERFESIYKPVVIEGITEGWKAEYKWTLERLAKKYRNQKFKCGEDNDGYSVKM 120

Query: 121 GKKYRNQKFKCGEDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPY 172
             KY  +  +   D+            H RRKKLL+DY++P+YF+DDLF++AGE++RPPY
Sbjct: 121 KMKYYIEYMRNTTDDSPLYIFDSSFGEHHRRKKLLEDYDIPLYFRDDLFKHAGEERRPPY 180

Query: 173 RWFVMGPARSGTGIHIDPLGTN 194
           RWFVMGPARSGTGIHIDPLGT+
Sbjct: 181 RWFVMGPARSGTGIHIDPLGTS 202

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711877|ref|XP_001943315.2| PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase PSR-like [Acyrthosiphon pisum]

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/190 (62%), Positives = 143/190 (75%), Gaps = 9/190 (4%)

Query: 14  RARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYE 73
           R RKRI+E K +ARPEL+ K AW   GYAD F  F  V +NV+RI V+  SP+EF+EKYE
Sbjct: 11  RTRKRIQEAKNKARPELSDKHAWHAHGYADNFKPFTKVHDNVDRIDVEIVSPEEFVEKYE 70

Query: 74  KPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKFKCG 132
           +P KPVVI+G+  NW A+YKWTLE++GKKYRNQ+FKCGEDN GYS K+  KY        
Sbjct: 71  RPYKPVVIRGLQNNWRASYKWTLERIGKKYRNQRFKCGEDNQGYSVKMKMKYFVHYMNNN 130

Query: 133 EDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGT 184
           +D+            H RRKKLLDDY++P+YFQDDLF+YAGE KRPPYRWFVMGP+RSGT
Sbjct: 131 KDDSPLYIFDSSYGDHHRRKKLLDDYDIPLYFQDDLFKYAGEKKRPPYRWFVMGPSRSGT 190

Query: 185 GIHIDPLGTN 194
           GIHIDPLGT+
Sbjct: 191 GIHIDPLGTS 200

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025056|ref|XP_003696297.1| PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase PSR-like [Apis florea]

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/245 (53%), Positives = 159/245 (64%), Gaps = 10/245 (4%)

Query: 11  LDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIE 70
           LD RA+KRIKE K++ARPEL  K AW + GY+ KF+ F    +NV+RI     S +EFIE
Sbjct: 7   LDHRAKKRIKEVKRKARPELGDKAAWIQHGYSKKFESFWNFTDNVDRIDESKVSTEEFIE 66

Query: 71  KYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKF 129
           KYEKP KPV+I+GV   W A YKWT+E+L KKYRNQKFKCGEDN GYS K+  KY  +  
Sbjct: 67  KYEKPYKPVIIQGVQNGWKAQYKWTIERLVKKYRNQKFKCGEDNEGYSVKMKMKYYVRYM 126

Query: 130 KCGEDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPAR 181
              ED+            HPRRKKLL+DY +P YF+DDLFQYAGE +RPPYRWFVMGPAR
Sbjct: 127 LNNEDDSPLYIFDSSFGEHPRRKKLLEDYVIPKYFRDDLFQYAGEHRRPPYRWFVMGPAR 186

Query: 182 SGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKL 241
           SGTGIHIDPLGT+  +  +             P D +L    +E GKQ +   +  +I  
Sbjct: 187 SGTGIHIDPLGTSAWNALISGHKRWCLFPTHTPRD-LLKVSAAEGGKQRDEAITWFSIIY 245

Query: 242 LRTPL 246
            RT L
Sbjct: 246 PRTKL 250

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781689|ref|XP_394543.3| PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase PSR [Apis mellifera]

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 131/245 (53%), Positives = 159/245 (64%), Gaps = 10/245 (4%)

Query: 11  LDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIE 70
           LD RA+KRIKE K++ARPEL  K AW + GY+ KF+ F    +NV+RI     S +EFIE
Sbjct: 7   LDHRAKKRIKEVKRKARPELGDKAAWIQHGYSKKFESFWNFTDNVDRIDESKVSTEEFIE 66

Query: 71  KYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKF 129
           KYEKP KPV+I+GV   W A YKWT+E+L KKYRNQKFKCGEDN GYS K+  KY  +  
Sbjct: 67  KYEKPYKPVIIQGVQNGWKAQYKWTIERLVKKYRNQKFKCGEDNEGYSVKMKMKYYVRYM 126

Query: 130 KCGEDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPAR 181
              ED+            HPRRKKLL+DY +P YF+DDLFQYAGE +RPPYRWFVMGPAR
Sbjct: 127 LNNEDDSPLYIFDSSFGEHPRRKKLLEDYVIPKYFRDDLFQYAGEHRRPPYRWFVMGPAR 186

Query: 182 SGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKL 241
           SGTGIHIDPLGT+  +  +             P D +L    +E GKQ +   +  +I  
Sbjct: 187 SGTGIHIDPLGTSAWNALISGHKRWCLFPTHTPRD-LLKVSAAEGGKQRDEAITWFSIIY 245

Query: 242 LRTPL 246
            RT L
Sbjct: 246 PRTKL 250

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713950|ref|XP_003395496.1| PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase PSR-like [Bombus terrestris]

 Score =  238 bits (606), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 141/193 (73%), Gaps = 9/193 (4%)

Query: 11  LDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIE 70
           LD RA+KRIKE K++ARPEL  K AW + GY+ KF+ F    +NV+RI     S +EFIE
Sbjct: 7   LDHRAKKRIKEVKRKARPELGDKAAWIQHGYSKKFESFWNFIDNVDRIDESKVSTEEFIE 66

Query: 71  KYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKF 129
           KYEKP KPV+I+GV   W A YKWT+E+L KKYRNQKFKCGEDN GYS K+  KY  +  
Sbjct: 67  KYEKPYKPVIIQGVQNGWKAQYKWTIERLVKKYRNQKFKCGEDNEGYSVKMKMKYYVRYM 126

Query: 130 KCGEDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPAR 181
              ED+            HPRRKKLL+DY +P YF+DDLFQYAGE +RPPYRWFVMGPAR
Sbjct: 127 LNNEDDSPLYIFDSSFGEHPRRKKLLEDYVIPKYFRDDLFQYAGEHRRPPYRWFVMGPAR 186

Query: 182 SGTGIHIDPLGTN 194
           SGTGIHIDPLGT+
Sbjct: 187 SGTGIHIDPLGTS 199

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421147|ref|XP_003492749.1| PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase PSR-like [Bombus impatiens]

 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 141/193 (73%), Gaps = 9/193 (4%)

Query: 11  LDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIE 70
           LD RA+KRIKE K++ARPEL  K AW + GY+ KF+ F    +NV+RI     S +EFIE
Sbjct: 7   LDHRAKKRIKEVKRKARPELGDKAAWIQHGYSKKFESFWNFIDNVDRIDESKVSTEEFIE 66

Query: 71  KYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKF 129
           KYEKP KPV+I+GV   W A YKWT+E+L KKYRNQKFKCGEDN GYS K+  KY  +  
Sbjct: 67  KYEKPYKPVIIQGVQNGWKAQYKWTIERLVKKYRNQKFKCGEDNEGYSVKMKMKYYVRYM 126

Query: 130 KCGEDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPAR 181
              ED+            HPRRKKLL+DY +P YF+DDLFQYAGE +RPPYRWFVMGPAR
Sbjct: 127 LNNEDDSPLYIFDSSFGEHPRRKKLLEDYVIPKYFRDDLFQYAGEHRRPPYRWFVMGPAR 186

Query: 182 SGTGIHIDPLGTN 194
           SGTGIHIDPLGT+
Sbjct: 187 SGTGIHIDPLGTS 199

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863665|ref|XP_003707300.1| PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase PSR-like [Megachile rotundata]

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/245 (52%), Positives = 158/245 (64%), Gaps = 10/245 (4%)

Query: 11  LDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIE 70
           LD RA+KRIKE K++ARPEL  K AW + GY+  F+ F    +NV+RI     S +EFIE
Sbjct: 7   LDHRAKKRIKEVKRKARPELGDKTAWIQHGYSKNFESFWNFTDNVDRIEESKVSTEEFIE 66

Query: 71  KYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKF 129
           KYEKP KPV+I+GV   W A YKWT+E+L KKYRNQKFKCGEDN GYS K+  KY  +  
Sbjct: 67  KYEKPYKPVIIQGVQNGWKAQYKWTIERLVKKYRNQKFKCGEDNEGYSVKMKMKYYVRYM 126

Query: 130 KCGEDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPAR 181
              +D+            HPRRKKLL+DY +P YF+DDLFQYAGE +RPPYRWFVMGPAR
Sbjct: 127 LNNDDDSPLYIFDSSFGEHPRRKKLLEDYVIPKYFRDDLFQYAGEHRRPPYRWFVMGPAR 186

Query: 182 SGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKL 241
           SGTGIHIDPLGT+  +  +             P  E+L    +E GKQ +   +  +I  
Sbjct: 187 SGTGIHIDPLGTSAWNALISGHKRWCLFPTHTP-RELLKVSAAEGGKQRDEAITWFSIIY 245

Query: 242 LRTPL 246
            RT L
Sbjct: 246 PRTKL 250

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027374|gb|EGI67457.1| Bifunctional arginine demethylase and lysyl-hydroxylase PSR [Acromyrmex echinatior]

 Score =  234 bits (597), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 128/245 (52%), Positives = 155/245 (63%), Gaps = 10/245 (4%)

Query: 11  LDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIE 70
           LD RARKRIKE KK+ARPEL  K AW + GY   F KF   ++N ERI     + +EF+E
Sbjct: 7   LDHRARKRIKEVKKKARPELADKAAWIQHGYCKIFQKFWEFQDNAERIDESSVTTEEFVE 66

Query: 71  KYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKF 129
           KYEKP KPV+I+GV   W A +KWT+E+L KKYRNQKFKCGEDN GYS K+  KY  +  
Sbjct: 67  KYEKPYKPVIIRGVQNGWRAQHKWTIERLAKKYRNQKFKCGEDNEGYSVKMKMKYYVRYM 126

Query: 130 KCGEDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPAR 181
              ED+            HPRRKKLL+DY +P YF+DDLF +AGE +RPPYRWFVMGPAR
Sbjct: 127 FNNEDDSPLYIFDSSFGEHPRRKKLLEDYVIPKYFRDDLFHHAGEHRRPPYRWFVMGPAR 186

Query: 182 SGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIKL 241
           SGTGIHIDPLGT+  +  +             P  E+L     E GKQ +   +  +I  
Sbjct: 187 SGTGIHIDPLGTSAWNALISGHKRWCLFPTHTP-RELLKVTAGEGGKQRDEAITWFSIVY 245

Query: 242 LRTPL 246
            RT L
Sbjct: 246 PRTKL 250

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495333|ref|XP_001601114.2| PREDICTED: bifunctional arginine demethylase and lysyl-hydroxylase PSR-like [Nasonia vitripennis]

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/193 (61%), Positives = 140/193 (72%), Gaps = 9/193 (4%)

Query: 11  LDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIE 70
           LD RARKRIKE K++ARPEL  K AW    Y+ KF +F   K+NV+RI   +  P+EFI 
Sbjct: 7   LDHRARKRIKEVKRKARPELADKAAWSLHNYSKKFQQFWNFKDNVDRIVESEVPPEEFIS 66

Query: 71  KYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKF 129
           KYEKP  PV+IKGV  +W A YKWT+E+L KKYRNQKFKCGEDN GYS K+  KY  +  
Sbjct: 67  KYEKPYIPVIIKGVQNDWKAQYKWTIERLAKKYRNQKFKCGEDNEGYSVKMKMKYYIRYM 126

Query: 130 KCGEDNHGY--------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPAR 181
           +  ED+            HPRRKKLL+DY +P YF+DDLFQ+AGE +RPPYRWFVMGP R
Sbjct: 127 QNNEDDSPLYIFDSSFGEHPRRKKLLEDYTIPKYFRDDLFQHAGEHRRPPYRWFVMGPER 186

Query: 182 SGTGIHIDPLGTN 194
           SGTGIHIDPLGT+
Sbjct: 187 SGTGIHIDPLGTS 199

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
FB|FBgn0038948	408	PSR "phosphatidylserine recept	0.381	0.463	0.572	1.5e-108
ZFIN|ZDB-GENE-040426-17	403	jmjd6 "jumonji domain containi	0.370	0.456	0.551	2.4e-106
UNIPROTKB|Q6GND3	403	jmjd6-a "Bifunctional arginine	0.370	0.456	0.561	2.2e-105
UNIPROTKB|Q7ZX37	403	jmjd6-b "Bifunctional arginine	0.370	0.456	0.546	3.2e-104
UNIPROTKB|Q58DS6	403	JMJD6 "Bifunctional arginine d	0.370	0.456	0.530	4e-104
UNIPROTKB|E2RE42	414	JMJD6 "Uncharacterized protein	0.370	0.444	0.530	5.1e-104
UNIPROTKB|Q6NYC1	403	JMJD6 "Bifunctional arginine d	0.370	0.456	0.530	5.1e-104
UNIPROTKB|Q5R6G2	403	JMJD6 "Bifunctional arginine d	0.370	0.456	0.530	5.1e-104
MGI|MGI:1858910	403	Jmjd6 "jumonji domain containi	0.225	0.277	0.785	8.3e-104
RGD|1305395	403	Jmjd6 "jumonji domain containi	0.225	0.277	0.785	8.3e-104

FB|FBgn0038948 PSR "phosphatidylserine receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 580 (209.2 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
 Identities = 114/199 (57%), Positives = 141/199 (70%)

Query:     5 SETSKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYS 64
             SE  K L  R+RKR +E K++ARPEL+G++AW  + Y +KF+ F    +N+ERI      
Sbjct:     2 SEEFK-LPKRSRKRTREVKRKARPELDGENAWSAMRYCEKFEPFWDFTDNLERIEESQVP 60

Query:    65 PQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKK 123
               EFIE++E+P KPVVI+G T+ W A  KWTL +L KKYRNQKFKCGEDN GYS K+  K
Sbjct:    61 ESEFIERFERPYKPVVIRGCTDGWLALEKWTLARLAKKYRNQKFKCGEDNEGYSVKMKMK 120

Query:   124 YRNQKFKCGEDNHG-Y-------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWF 175
             Y  +  +   D+   Y        H RR+KLLDDY VP YF+DDLFQY GE++RPPYRWF
Sbjct:   121 YYVEYMQSTRDDSPLYIFDSSFGEHHRRRKLLDDYVVPKYFRDDLFQYCGENRRPPYRWF 180

Query:   176 VMGPARSGTGIHIDPLGTN 194
             VMGPARSGTGIHIDPLGT+
Sbjct:   181 VMGPARSGTGIHIDPLGTS 199

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IGI;IMP

GO:0046329 "negative regulation of JNK cascade" evidence=IGI

GO:0035212 "cell competition in a multicellular organism" evidence=IMP

ZFIN|ZDB-GENE-040426-17 jmjd6 "jumonji domain containing 6" [Danio rerio (taxid:7955)]

 Score = 558 (201.5 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
 Identities = 107/194 (55%), Positives = 140/194 (72%)

Query:    11 LDSRARKRIKETKKRARPELNGKDAWFELGYADKFD-KFKIVKENVERIHVKDYSPQEFI 69
             ++ +++KRIKE K+ ARPEL     W +  Y   FD   + VK+NVER  V+  SP+EFI
Sbjct:     1 MNHKSKKRIKEAKRSARPELKDSSDWTKHEYCKSFDLSHRSVKDNVERADVQRLSPEEFI 60

Query:    70 EKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQK 128
             +++EKP KPVV+  V ++W A  KWTLE+L +KYRNQKFKCGEDN GYS K+  KY  + 
Sbjct:    61 QRFEKPYKPVVLLNVEDSWPAREKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYVEY 120

Query:   129 FKCGEDNHG-Y-------SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPA 180
              +   D+   Y        H +R+KLL+DY+VP++F+DDLFQ+AGE +RPPYRWFVMGPA
Sbjct:   121 LESTHDDSPLYIFDSSFGEHAKRRKLLEDYQVPLFFRDDLFQFAGEKRRPPYRWFVMGPA 180

Query:   181 RSGTGIHIDPLGTN 194
             RSGTGIHIDPLGT+
Sbjct:   181 RSGTGIHIDPLGTS 194

GO:0006909 "phagocytosis" evidence=IMP

GO:0002040 "sprouting angiogenesis" evidence=ISS

GO:0003727 "single-stranded RNA binding" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0033749 "histone demethylase activity (H4-R3 specific)" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=ISS

GO:0070815 "peptidyl-lysine 5-dioxygenase activity" evidence=ISS

GO:0033746 "histone demethylase activity (H3-R2 specific)" evidence=ISS

GO:0018395 "peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q6GND3 jmjd6-a "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-A" [Xenopus laevis (taxid:8355)]

 Score = 545 (196.9 bits), Expect = 2.2e-105, Sum P(2) = 2.2e-105
 Identities = 109/194 (56%), Positives = 133/194 (68%)

Query:    11 LDSRARKRIKETKKRARPELNGKDAWFELGYADKFD-KFKIVKENVERIHVKDYSPQEFI 69
             ++ +++KRIKE K+ ARPEL     W    Y + F      V++NVER      S +EFI
Sbjct:     1 MNHKSKKRIKEAKRSARPELKDSQDWCRHNYCEVFSLNPSTVRDNVERADDAHLSIEEFI 60

Query:    70 EKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQK 128
             ++YEKP KPVVI   T +W A  KWTLE+L +KYRNQKFKCGEDN GYS K+  KY    
Sbjct:    61 DRYEKPYKPVVIVNATADWPAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIDY 120

Query:   129 FKCGEDNH-------GYS-HPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPA 180
              +   D+         Y  HP+RKKLL+DYEVP YF+DDLFQ+AGE +RPPYRWFVMGPA
Sbjct:   121 MEGTRDDSPLYIFDSSYGEHPKRKKLLEDYEVPKYFRDDLFQFAGEKRRPPYRWFVMGPA 180

Query:   181 RSGTGIHIDPLGTN 194
             RSGTGIHIDPLGT+
Sbjct:   181 RSGTGIHIDPLGTS 194

GO:0002040 "sprouting angiogenesis" evidence=ISS

GO:0003727 "single-stranded RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0018395 "peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine" evidence=ISS

GO:0033746 "histone demethylase activity (H3-R2 specific)" evidence=ISS

GO:0033749 "histone demethylase activity (H4-R3 specific)" evidence=ISS

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=ISS

GO:0070078 "histone H3-R2 demethylation" evidence=ISS

GO:0070079 "histone H4-R3 demethylation" evidence=ISS

GO:0070815 "peptidyl-lysine 5-dioxygenase activity" evidence=ISS

UNIPROTKB|Q7ZX37 jmjd6-b "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-B" [Xenopus laevis (taxid:8355)]

 Score = 539 (194.8 bits), Expect = 3.2e-104, Sum P(2) = 3.2e-104
 Identities = 106/194 (54%), Positives = 130/194 (67%)

Query:    11 LDSRARKRIKETKKRARPELNGKDAWFELGYADKFD-KFKIVKENVERIHVKDYSPQEFI 69
             ++ +++KRIKE K+ ARPEL     W    Y + F      V +NVER+     + +EFI
Sbjct:     1 MNHKSKKRIKEAKRSARPELKDSQDWCRHNYCEVFSLNPSTVLDNVERVDAAQLTTEEFI 60

Query:    70 EKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQK 128
             E+YEKP KPVVI   T  W A  KWTLE+L +KYRNQKFKCGEDN GYS K+  KY    
Sbjct:    61 ERYEKPYKPVVIINATAGWPANEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIDY 120

Query:   129 FKCGEDNH-------GYS-HPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPA 180
              +   D+         Y  HP+RKK+L+DYEVP YF+DDLFQ+ GE +RPPYRWFVMGP 
Sbjct:   121 MEGTRDDSPLYIFDSSYGEHPKRKKILEDYEVPKYFRDDLFQFTGEKRRPPYRWFVMGPP 180

Query:   181 RSGTGIHIDPLGTN 194
             RSGTGIHIDPLGT+
Sbjct:   181 RSGTGIHIDPLGTS 194

GO:0002040 "sprouting angiogenesis" evidence=ISS

GO:0003727 "single-stranded RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0018395 "peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine" evidence=ISS

GO:0033746 "histone demethylase activity (H3-R2 specific)" evidence=ISS

GO:0033749 "histone demethylase activity (H4-R3 specific)" evidence=ISS

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=ISS

GO:0070078 "histone H3-R2 demethylation" evidence=ISS

GO:0070079 "histone H4-R3 demethylation" evidence=ISS

GO:0070815 "peptidyl-lysine 5-dioxygenase activity" evidence=ISS

UNIPROTKB|Q58DS6 JMJD6 "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6" [Bos taurus (taxid:9913)]

 Score = 526 (190.2 bits), Expect = 4.0e-104, Sum P(2) = 4.0e-104
 Identities = 103/194 (53%), Positives = 131/194 (67%)

Query:    11 LDSRARKRIKETKKRARPELNGKDAWFELGYADKFD-KFKIVKENVERIHVKDYSPQEFI 69
             ++ +++KRI+E K+ ARPEL     W    Y + F      V +NVER      S +EF+
Sbjct:     1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYFESFPLNPAAVADNVERADALQLSVEEFV 60

Query:    70 EKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQK 128
             E+YE+P KPVV+    E W+A  KWTLE+L +KYRNQKFKCGEDN GYS K+  KY  + 
Sbjct:    61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120

Query:   129 FKCGEDNH-------GYS-HPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPA 180
              +   D+         Y  HP+R+KLL+DY+VP +F DDLFQYAGE +RPPYRWFVMGP 
Sbjct:   121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 180

Query:   181 RSGTGIHIDPLGTN 194
             RSGTGIHIDPLGT+
Sbjct:   181 RSGTGIHIDPLGTS 194

GO:0002040 "sprouting angiogenesis" evidence=ISS

GO:0003727 "single-stranded RNA binding" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=ISS

GO:0018395 "peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine" evidence=ISS

GO:0070815 "peptidyl-lysine 5-dioxygenase activity" evidence=ISS

GO:0033749 "histone demethylase activity (H4-R3 specific)" evidence=ISS

GO:0033746 "histone demethylase activity (H3-R2 specific)" evidence=ISS

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0043654 "recognition of apoptotic cell" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0042116 "macrophage activation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E2RE42 JMJD6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 527 (190.6 bits), Expect = 5.1e-104, Sum P(2) = 5.1e-104
 Identities = 103/194 (53%), Positives = 131/194 (67%)

Query:    11 LDSRARKRIKETKKRARPELNGKDAWFELGYADKFD-KFKIVKENVERIHVKDYSPQEFI 69
             ++ +++KRI+E K+ ARPEL     W    Y + F      V +NVER      S +EF+
Sbjct:     1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLNPAAVADNVERADALQLSVEEFV 60

Query:    70 EKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQK 128
             E+YE+P KPVV+    E W+A  KWTLE+L +KYRNQKFKCGEDN GYS K+  KY  + 
Sbjct:    61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120

Query:   129 FKCGEDNH-------GYS-HPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPA 180
              +   D+         Y  HP+R+KLL+DY+VP +F DDLFQYAGE +RPPYRWFVMGP 
Sbjct:   121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 180

Query:   181 RSGTGIHIDPLGTN 194
             RSGTGIHIDPLGT+
Sbjct:   181 RSGTGIHIDPLGTS 194

GO:0070815 "peptidyl-lysine 5-dioxygenase activity" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=IEA

GO:0043654 "recognition of apoptotic cell" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0042116 "macrophage activation" evidence=IEA

GO:0033749 "histone demethylase activity (H4-R3 specific)" evidence=IEA

GO:0033746 "histone demethylase activity (H3-R2 specific)" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0018395 "peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=IEA

GO:0002040 "sprouting angiogenesis" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

UNIPROTKB|Q6NYC1 JMJD6 "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6" [Homo sapiens (taxid:9606)]

 Score = 527 (190.6 bits), Expect = 5.1e-104, Sum P(2) = 5.1e-104
 Identities = 103/194 (53%), Positives = 131/194 (67%)

Query:    11 LDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKI-VKENVERIHVKDYSPQEFI 69
             ++ +++KRI+E K+ ARPEL     W    Y + F      V +NVER      S +EF+
Sbjct:     1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV 60

Query:    70 EKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQK 128
             E+YE+P KPVV+    E W+A  KWTLE+L +KYRNQKFKCGEDN GYS K+  KY  + 
Sbjct:    61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120

Query:   129 FKCGEDNH-------GYS-HPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPA 180
              +   D+         Y  HP+R+KLL+DY+VP +F DDLFQYAGE +RPPYRWFVMGP 
Sbjct:   121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 180

Query:   181 RSGTGIHIDPLGTN 194
             RSGTGIHIDPLGT+
Sbjct:   181 RSGTGIHIDPLGTS 194

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0042116 "macrophage activation" evidence=IEA

GO:0043654 "recognition of apoptotic cell" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0033746 "histone demethylase activity (H3-R2 specific)" evidence=IDA

GO:0033749 "histone demethylase activity (H4-R3 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0018395 "peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine" evidence=IDA

GO:0005506 "iron ion binding" evidence=IDA

GO:0003727 "single-stranded RNA binding" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0002040 "sprouting angiogenesis" evidence=ISS

GO:0070815 "peptidyl-lysine 5-dioxygenase activity" evidence=IDA

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=IMP

GO:0042802 "identical protein binding" evidence=IDA

GO:0070078 "histone H3-R2 demethylation" evidence=IDA

GO:0070079 "histone H4-R3 demethylation" evidence=IDA

UNIPROTKB|Q5R6G2 JMJD6 "Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6" [Pongo abelii (taxid:9601)]

 Score = 527 (190.6 bits), Expect = 5.1e-104, Sum P(2) = 5.1e-104
 Identities = 103/194 (53%), Positives = 131/194 (67%)

Query:    11 LDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKI-VKENVERIHVKDYSPQEFI 69
             ++ +++KRI+E K+ ARPEL     W    Y + F      V +NVER      S +EF+
Sbjct:     1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV 60

Query:    70 EKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQK 128
             E+YE+P KPVV+    E W+A  KWTLE+L +KYRNQKFKCGEDN GYS K+  KY  + 
Sbjct:    61 ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 120

Query:   129 FKCGEDNH-------GYS-HPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPA 180
              +   D+         Y  HP+R+KLL+DY+VP +F DDLFQYAGE +RPPYRWFVMGP 
Sbjct:   121 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 180

Query:   181 RSGTGIHIDPLGTN 194
             RSGTGIHIDPLGT+
Sbjct:   181 RSGTGIHIDPLGTS 194

GO:0002040 "sprouting angiogenesis" evidence=ISS

GO:0003727 "single-stranded RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0018395 "peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine" evidence=ISS

GO:0033746 "histone demethylase activity (H3-R2 specific)" evidence=ISS

GO:0033749 "histone demethylase activity (H4-R3 specific)" evidence=ISS

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=ISS

GO:0070078 "histone H3-R2 demethylation" evidence=ISS

GO:0070079 "histone H4-R3 demethylation" evidence=ISS

GO:0070815 "peptidyl-lysine 5-dioxygenase activity" evidence=ISS

MGI|MGI:1858910 Jmjd6 "jumonji domain containing 6" [Mus musculus (taxid:10090)]

 Score = 526 (190.2 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
 Identities = 88/112 (78%), Positives = 104/112 (92%)

Query:   383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
             WCLFPT+TP++L+KVT  EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct:   206 WCLFPTNTPRELIKVTREEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 265

Query:   443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
             FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct:   266 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILK 317

GO:0001568 "blood vessel development" evidence=IMP

GO:0001822 "kidney development" evidence=IMP

GO:0002040 "sprouting angiogenesis" evidence=IMP

GO:0003723 "RNA binding" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=ISO

GO:0004872 "receptor activity" evidence=IDA

GO:0005506 "iron ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006915 "apoptotic process" evidence=IDA

GO:0007166 "cell surface receptor signaling pathway" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007507 "heart development" evidence=IMP

GO:0008380 "RNA splicing" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0018395 "peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030324 "lung development" evidence=IMP

GO:0033077 "T cell differentiation in thymus" evidence=IMP

GO:0033746 "histone demethylase activity (H3-R2 specific)" evidence=ISO

GO:0033749 "histone demethylase activity (H4-R3 specific)" evidence=ISO

GO:0042116 "macrophage activation" evidence=IMP

GO:0042802 "identical protein binding" evidence=ISO

GO:0043277 "apoptotic cell clearance" evidence=IMP

GO:0043654 "recognition of apoptotic cell" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=ISO;IMP

GO:0048821 "erythrocyte development" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0070078 "histone H3-R2 demethylation" evidence=ISO

GO:0070079 "histone H4-R3 demethylation" evidence=ISO

GO:0070815 "peptidyl-lysine 5-dioxygenase activity" evidence=ISO

RGD|1305395 Jmjd6 "jumonji domain containing 6" [Rattus norvegicus (taxid:10116)]

 Score = 526 (190.2 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
 Identities = 88/112 (78%), Positives = 104/112 (92%)

Query:   383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
             WCLFPT+TP++L+KVT  EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct:   206 WCLFPTNTPRELIKVTREEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 265

Query:   443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
             FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct:   266 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILK 317

GO:0001568 "blood vessel development" evidence=ISO

GO:0001822 "kidney development" evidence=IEA;ISO

GO:0002040 "sprouting angiogenesis" evidence=ISO;ISS

GO:0003674 "molecular_function" evidence=ND

GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS

GO:0004872 "receptor activity" evidence=IEA;ISO

GO:0005506 "iron ion binding" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA;ISO

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA;ISO

GO:0007507 "heart development" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0018395 "peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine" evidence=ISO;ISS

GO:0030324 "lung development" evidence=IEA;ISO

GO:0033077 "T cell differentiation in thymus" evidence=IEA;ISO

GO:0033746 "histone demethylase activity (H3-R2 specific)" evidence=ISO;ISS

GO:0033749 "histone demethylase activity (H4-R3 specific)" evidence=ISO;ISS

GO:0042116 "macrophage activation" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0043277 "apoptotic cell clearance" evidence=ISO

GO:0043654 "recognition of apoptotic cell" evidence=IEA;ISO

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=ISO;ISS

GO:0048821 "erythrocyte development" evidence=IEA;ISO

GO:0060041 "retina development in camera-type eye" evidence=IEA;ISO

GO:0070078 "histone H3-R2 demethylation" evidence=ISO

GO:0070079 "histone H4-R3 demethylation" evidence=ISO

GO:0070815 "peptidyl-lysine 5-dioxygenase activity" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VD28	JMJD6_DROME	1, ., 1, 4, ., 1, 1, ., -	0.5699	0.3709	0.4509	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	496
pfam02373	114	pfam02373, JmjC, JmjC domain, hydroxylase	3e-18
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	9e-08
pfam13621	247	pfam13621, Cupin_8, Cupin-like domain	3e-06
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	4e-06
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	5e-06
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	7e-06
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	8e-06
smart00558	58	smart00558, JmjC, A domain family that is part of	2e-04
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	6e-04
PRK05134	233	PRK05134, PRK05134, bifunctional 3-demethylubiquin	0.001
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	0.001
COG2813	300	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans	0.003
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	0.004
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.004

>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase

 Score = 80.0 bits (198), Expect = 3e-18
 Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 12/124 (9%)

Query: 344 KFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKL--LTVWCLFPTHTPKDLLKVTSAE 401
             Y G  GS            +  + +YS  NY       VW + P+   +   KV S  
Sbjct: 1   WLYMGMPGS-------TTPWHIEDQGLYS-INYLHFGGPKVWYIIPSEYAEKFEKVLSKH 52

Query: 402 GGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAV 461
            G ++ + +   + I    QL            VQ PGE VF   GW+H V NL   +A 
Sbjct: 53  NGGEQPDLLLHLNTIISPKQL--LENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAE 110

Query: 462 TQNF 465
             NF
Sbjct: 111 AVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 289 DKLSVLDVGCGAGLLG--LYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY 346
             + VLD+GCG G L   L   +   A V   D ++E IE              E  +F 
Sbjct: 3   SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA---KENAKKLGYENVEFI 59

Query: 347 HGDWGSL--SAVIHSKFDIILTSETIYSVANYNKLL 380
            GD   L    +  + FD+++++E +  + + +K+L
Sbjct: 60  QGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVL 95

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|222269 pfam13621, Cupin_8, Cupin-like domain

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 38/155 (24%), Positives = 53/155 (34%), Gaps = 37/155 (23%)

Query: 65  PQEFIEKYEKPNKPVVIKGVTENWNATYKWT--LEKLGKKYRNQKFKCGE---------- 112
           P+EF  +Y    KPVV+KG  ++W A  KWT  L+ L +KY + +               
Sbjct: 1   PEEFFREYVAKRKPVVLKGAAKDWPAVKKWTDALDYLKEKYGDVEVSVEVTPPGRADRFF 60

Query: 113 DNHGYSKLGKKYRNQKFKCGEDNHGYSHPRRKKLLDDYEVPIYFQ----DDLFQYAGEDK 168
            N   S +  K     FK   D        R     +    +Y Q    D  F    ED 
Sbjct: 61  YNDDLSGVNFKEERMPFK---DFLDLL---RAGSDQETPPYLYLQSSNLDSEFPGLREDN 114

Query: 169 RPPYR-------------WFVMGPARSGTGIHIDP 190
             P               W  +G   + T +H D 
Sbjct: 115 DLPLAPEAFGKLPQAVNLW--IGNGGTTTSLHYDA 147

This cupin like domain shares similarity to the JmjC domain. Length = 247

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 292 SVLDVGCGAGLLGLYTL-MNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350
            VLD+GCG G+LG      +    V+  D N   +ES    N+  N   LE  + +  D 
Sbjct: 34  KVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARA-NLAAN--GLENGEVFWSD- 89

Query: 351 GSLSAVIHSKFDIILT 366
              SAV   KFD+I++
Sbjct: 90  -LYSAVEPGKFDLIIS 104

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 279 LNFIKDNVAVDKLSVLDVGCGAGLLGLYTL--MNGAAHVSFQDYNQEVIESLTLPNILMN 336
           L  +K       L VLD+G G+G + L  L      A V+  D + E +  +   N    
Sbjct: 81  LERLKKG----PLRVLDLGTGSGAIAL-ALAKERPDARVTAVDISPEALA-VARKNAARL 134

Query: 337 TDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366
              L+  +F   DW     +   KFD+I++
Sbjct: 135 --GLDNVEFLQSDW--FEPLPGGKFDLIVS 160

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 46.4 bits (111), Expect = 7e-06
 Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 260 LKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQD 319
           L   VYE      E +F L     D        VL+VG G+G++ +    NG   V   D
Sbjct: 1   LNDEVYEPA----EDSFLLAENAVD---KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVD 52

Query: 320 YNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL 365
            N   +E     N  +N       +    D          KFD+IL
Sbjct: 53  INPYAVE-CAKCNAKLNNIRNNGVEVIRSD--LFEPFRGDKFDVIL 95

Length = 188

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352
           VLD+GCG G L L       A V+  D +   +E              +  +   GD   
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA---LLADNVEVLKGDAEE 58

Query: 353 LSAVIHSKFDIIL 365
           L       FD+I+
Sbjct: 59  LPPEADESFDVII 71

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|214721 smart00558, JmjC, A domain family that is part of the cupin metalloenzyme superfamily

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 145 KLLDDYEVPIYFQDDLFQYAGEDKRPP--YRWFVMGPARSGTGIHIDPLGT 193
           +L +  ++P  F+ +L     ED   P    +  MG A S T  HID    
Sbjct: 1   QLWNLAKLP--FKLNLLSDLPEDIPGPDVGPYLYMGMAGSTTPWHIDDYDL 49

Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press). Length = 58

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 11/109 (10%)

Query: 259 DLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNG-AAHVSF 317
            +   V          T  L+      +      +LD+G G+G + +     G  A V  
Sbjct: 84  KVDEGVLIPR----PDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIA 139

Query: 318 QDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT 366
            D + + +  L   N   N   L +      D       +  KFD+I++
Sbjct: 140 VDISPDALA-LARENAERN--GLVRVLVVQSDLFE---PLRGKFDLIVS 182

Length = 280

>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

 Score = 40.5 bits (96), Expect = 0.001
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 279 LNFIKDNVA-VDKLSVLDVGCGAGLL 303
           LN+I+++   +    VLDVGCG G+L
Sbjct: 37  LNYIREHAGGLFGKRVLDVGCGGGIL 62

Length = 233

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 294 LDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL 353
           LDVGCG GLL       G A V+  D + E++                  KF  GD   L
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALAR---------KRAPRKFVVGDAEDL 51

Query: 354 SAVIHSKFDIILTSETIYSVANYNKLL 380
                S FD++++S  ++ + +  + L
Sbjct: 52  PFPDES-FDVVVSSLVLHHLPDPERAL 77

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 292 SVLDVGCGAGLLGLYTL-MNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350
            VLD+GCG G+LGL     +  A ++  D N   +ES    N+  N   +E  + +  + 
Sbjct: 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARK-NLAAN--GVENTEVWASN- 216

Query: 351 GSLSAVIHSKFDIILT 366
             L   +  KFD+I++
Sbjct: 217 --LYEPVEGKFDLIIS 230

Length = 300

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 279 LNFIKDNVA-----VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNI 333
           L++I+D +      +  L VLDVGCG GLL       GA  V+  D ++E IE   L   
Sbjct: 30  LDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGAN-VTGIDASEENIEVAKLH-- 86

Query: 334 LMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVAN 375
               D L K ++       L+      FD++   E +  V +
Sbjct: 87  -AKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPD 127

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 292 SVLDVGCGAGLLGLYT--LMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD 349
            VLD+GCG G L +    L  GA      D + E++E     N  +      +  F  GD
Sbjct: 4   RVLDIGCGTGSLAIELARLFPGARVTGV-DLSPEMLELARE-NAKLA--LGPRITFVQGD 59

Query: 350 WGSLSAVIHSKFDIILTSETIYSV 373
                 ++   FD +        +
Sbjct: 60  APDALDLLE-GFDAVFIGGGGGDL 82

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
KOG2130|consensus	407		100.0
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	99.94
KOG2131|consensus	427		99.9
KOG2508|consensus	437		99.73
KOG2132|consensus	355		99.7
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.49
KOG1499|consensus	346		99.46
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.42
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.39
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.35
KOG1270|consensus	282		99.34
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.31
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.3
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.3
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.3
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.29
PLN02244	340	tocopherol O-methyltransferase	99.28
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.28
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.28
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.26
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.25
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.23
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.22
PRK05785	226	hypothetical protein; Provisional	99.21
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.2
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.18
PRK11207	197	tellurite resistance protein TehB; Provisional	99.17
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.17
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.15
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.14
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.14
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.12
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.12
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.11
PLN02336	475	phosphoethanolamine N-methyltransferase	99.1
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.1
COG4123	248	Predicted O-methyltransferase [General function pr	99.1
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.1
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.09
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.09
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.07
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.07
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.05
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.05
KOG1540|consensus	296		99.04
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.04
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.03
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.02
PLN02490	340	MPBQ/MSBQ methyltransferase	99.01
COG2890	280	HemK Methylase of polypeptide chain release factor	99.01
PRK12335	287	tellurite resistance protein TehB; Provisional	99.0
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.0
PRK06202	232	hypothetical protein; Provisional	98.99
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.99
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.99
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.99
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.97
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.96
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.96
PRK08317	241	hypothetical protein; Provisional	98.95
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.95
PRK14967	223	putative methyltransferase; Provisional	98.95
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.93
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.92
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.9
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.9
KOG1500|consensus	517		98.9
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.89
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.89
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.88
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.87
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.87
KOG4300|consensus	252		98.86
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.85
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.85
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.84
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.84
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.83
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.83
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.83
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.81
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.81
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.8
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.8
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.79
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.78
PHA03411	279	putative methyltransferase; Provisional	98.78
PRK06922	677	hypothetical protein; Provisional	98.78
PRK14968	188	putative methyltransferase; Provisional	98.78
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.77
PLN02336	475	phosphoethanolamine N-methyltransferase	98.76
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.76
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.76
PHA03412	241	putative methyltransferase; Provisional	98.74
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.74
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.73
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.72
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.72
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.71
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.7
PLN02672	1082	methionine S-methyltransferase	98.7
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.7
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.69
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.68
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.67
KOG1541|consensus	270		98.66
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.66
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.65
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.65
PLN03075	296	nicotianamine synthase; Provisional	98.65
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.64
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.64
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.64
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.6
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.6
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.58
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.57
KOG1271|consensus	227		98.56
KOG3420|consensus	185		98.56
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.55
PRK07402	196	precorrin-6B methylase; Provisional	98.55
PRK04266	226	fibrillarin; Provisional	98.54
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.52
KOG3010|consensus	261		98.52
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.52
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.51
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.51
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.51
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.51
KOG3191|consensus	209		98.5
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.46
KOG2904|consensus	328		98.46
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.46
PRK04457	262	spermidine synthase; Provisional	98.45
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.45
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.44
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.44
KOG2920|consensus	282		98.43
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.43
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.42
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.42
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.4
PRK00811	283	spermidine synthase; Provisional	98.39
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.39
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.38
PRK04148	134	hypothetical protein; Provisional	98.38
TIGR03438	301	probable methyltransferase. This model represents	98.36
PTZ00146	293	fibrillarin; Provisional	98.36
KOG1356|consensus	889		98.36
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.36
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.35
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.35
COG3897	218	Predicted methyltransferase [General function pred	98.31
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.31
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.31
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.3
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.29
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.28
TIGR00438	188	rrmJ cell division protein FtsJ.	98.23
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.22
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.16
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.12
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.12
PRK01581	374	speE spermidine synthase; Validated	98.12
PRK03612	521	spermidine synthase; Provisional	98.08
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.08
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.07
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.04
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.04
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.04
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.03
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.02
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.0
KOG2187|consensus	534		97.99
KOG0820|consensus	315		97.98
PLN02366	308	spermidine synthase	97.98
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.96
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.92
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.89
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.86
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.85
COG2850	383	Uncharacterized conserved protein [Function unknow	97.84
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.82
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	97.79
KOG1975|consensus	389		97.78
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.76
PLN02476	278	O-methyltransferase	97.74
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.73
KOG1633|consensus	776		97.7
COG4122	219	Predicted O-methyltransferase [General function pr	97.7
KOG2940|consensus	325		97.68
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.67
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.63
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.63
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.6
KOG3201|consensus	201		97.59
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.57
KOG2361|consensus	264		97.55
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.54
COG2520	341	Predicted methyltransferase [General function pred	97.52
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.51
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.5
COG4076	252	Predicted RNA methylase [General function predicti	97.49
PRK10742	250	putative methyltransferase; Provisional	97.46
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.44
PLN02823	336	spermine synthase	97.39
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.36
PF13679	141	Methyltransf_32: Methyltransferase domain	97.36
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.35
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.33
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.31
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.31
COG2521	287	Predicted archaeal methyltransferase [General func	97.29
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.25
KOG1661|consensus	237		97.24
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.23
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.18
KOG2899|consensus	288		97.16
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.13
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.07
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.04
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.0
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.96
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.92
KOG2793|consensus	248		96.87
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.72
KOG1709|consensus	271		96.72
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.54
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.51
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.51
smart00558	57	JmjC A domain family that is part of the cupin met	96.5
KOG2730|consensus	263		96.49
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.46
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.34
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.34
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	96.24
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.2
PHA01634	156	hypothetical protein	96.15
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.14
KOG2915|consensus	314		96.12
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.04
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.02
KOG1331|consensus	293		96.0
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.93
KOG1269|consensus	364		95.9
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	95.72
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	95.67
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.63
KOG3045|consensus	325		95.58
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.53
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	95.41
COG4262	508	Predicted spermidine synthase with an N-terminal m	95.25
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	95.16
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.83
COG2384	226	Predicted SAM-dependent methyltransferase [General	94.78
KOG1501|consensus	636		94.58
PRK11524	284	putative methyltransferase; Provisional	94.55
KOG4058|consensus	199		94.52
PRK00536	262	speE spermidine synthase; Provisional	94.46
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	94.34
KOG3987|consensus	288		94.11
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.09
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	93.89
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	93.83
KOG4589|consensus	232		93.54
PRK13699	227	putative methylase; Provisional	93.53
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	93.4
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	93.24
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	93.03
KOG2078|consensus	495		92.97
KOG1227|consensus	351		92.94
KOG2671|consensus	421		92.92
KOG1663|consensus	237		92.68
KOG2352|consensus	482		92.49
KOG3178|consensus	342		92.12
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	92.01
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	91.62
KOG3115|consensus	249		91.23
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	91.22
COG0286	489	HsdM Type I restriction-modification system methyl	90.74
COG3129	292	Predicted SAM-dependent methyltransferase [General	90.08
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	90.08
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	89.83
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	88.94
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	88.77
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	88.53
KOG2651|consensus	476		88.5
PRK10458	467	DNA cytosine methylase; Provisional	88.4
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	88.08
COG1568	354	Predicted methyltransferases [General function pre	88.02
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	87.72
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	87.5
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	86.91
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	86.18
COG1565	370	Uncharacterized conserved protein [Function unknow	86.1
KOG1596|consensus	317		85.71
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	84.29
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	84.04
KOG1122|consensus	460		82.06

>KOG2130|consensus

Probab=100.00  E-value=1.3e-79  Score=577.92  Aligned_cols=311  Identities=56%  Similarity=1.011  Sum_probs=294.4

Q ss_pred             ccccchHHHHhhHHhhhcCCCCCCCcccccccCcccccccc-ccCCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCCC
Q psy11730          8 SKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKF-KIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTE   86 (496)
Q Consensus         8 ~~~~~~~~~~~~~~~k~~~r~~~~~~~~w~~~~~~~~~~~~-~~~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~   86 (496)
                      ...+++++.+|++++|+++||+|....+|...+|++.|.+. +...++++|+++.++|.+||+++|.+|++||||+|+++
T Consensus         6 y~~~n~~~~kr~~~~kr~arpel~~~~~w~~~~y~e~f~~~~~~~~dn~~r~~~~~isveeF~~~ferp~kPVll~g~~D   85 (407)
T KOG2130|consen    6 YILCNHEPLKRSLELKRKARPELYKMSDWLYKRYYESFTLLDPFFFDNGNRERRRNISVEEFIERFERPYKPVLLSGLTD   85 (407)
T ss_pred             eeecCcchHHHHHHHHHhcChhhhhhhhHHHHHHHHhccccCccccccchhhhhcCCCHHHHHHHhcccCCceEeecccc
Confidence            45688999999999999999999999999999999999764 45889999999999999999999999999999999999


Q ss_pred             CCcCCCCCCHHHHHhhcCCeeEEeeecCCCcc-ccCHHHHHHHhhcCCCC-CCCCcc-----ccc--cccccCCCCCCCc
Q psy11730         87 NWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKFKCGEDN-HGYSHP-----RRK--KLLDDYEVPIYFQ  157 (496)
Q Consensus        87 ~WpA~~~Wt~~~L~~~~g~~~v~v~~~~~~~~-~m~~~~f~~~~~~~~~~-p~y~~~-----~~~--~L~~d~~~P~~f~  157 (496)
                      +|||.+|||.++|.++|||++|+|+++++|++ +|+|++|++||+++.|+ |+|+++     +.|  .|.+||.||+||+
T Consensus        86 gW~A~ekWT~drLskkyrnq~Fkcged~~gnsv~MKmkyY~~Ym~~~RddsPLYiFDssFgE~~~~rkLl~dY~VPk~F~  165 (407)
T KOG2130|consen   86 GWPASEKWTLDRLSKKYRNQKFKCGEDNNGNSVKMKMKYYIEYMKSTRDDSPLYIFDSSFGEHAPRRKLLEDYSVPKYFR  165 (407)
T ss_pred             CCchhhhhhHHHHHHHhcCccccccccCCCcceeeeHHHHHHHHhccccCCCeEEecchhhcccchhhhhhhcCcchhhh
Confidence            99999999999999999999999999999999 99999999999999998 988865     234  8999999999999


Q ss_pred             hhhhcccCCCCCCCccceEecCCCCccccccCCCCCCCcccccCCCCCccccCCCCChhHHHHHHHHHhccccccccccc
Q psy11730        158 DDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVS  237 (496)
Q Consensus       158 ~d~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  237 (496)
                      +|+|+++++++|||||||+|||++|||.+|+||.+++|||+-|+|.                                  
T Consensus       166 dDlF~y~g~e~RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~Gh----------------------------------  211 (407)
T KOG2130|consen  166 DDLFQYLGEERRPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQGH----------------------------------  211 (407)
T ss_pred             HHHHHhcCcccCCCceeEEecCCCCCceeEECCcchHHHHHHhhcc----------------------------------
Confidence            9999999999999999999999999999999999999944444432                                  


Q ss_pred             cchhcccCCccccceeecccccCCCccccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEE
Q psy11730        238 NIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSF  317 (496)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~g  317 (496)
                                                                                                      
T Consensus       212 --------------------------------------------------------------------------------  211 (407)
T KOG2130|consen  212 --------------------------------------------------------------------------------  211 (407)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhheeeecCCCCCcccEEE
Q psy11730        318 QDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKV  397 (496)
Q Consensus       318 iD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~~~~~~~~~  397 (496)
                                                                                     +.|+|||++.+..++.+
T Consensus       212 ---------------------------------------------------------------KrW~LfPp~~p~~lvkv  228 (407)
T KOG2130|consen  212 ---------------------------------------------------------------KRWVLFPPGTPPELVKV  228 (407)
T ss_pred             ---------------------------------------------------------------ceeEEcCCCCCCCceee
Confidence                                                                           78999999999999999


Q ss_pred             eeccCCcccccccchhhHhcCCCCCCCCCCCCCchhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCCCChhhHHHH
Q psy11730        398 TSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHK  477 (496)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~~~~~~~~~  477 (496)
                      ....++....+.+.||..+|+.+++|.||.+.+|+||+|+|||++|+|+||||.|+|+++|||||||||+.+||+-||||
T Consensus       229 ~~~e~g~~~de~itwf~~~y~rt~~Pswp~E~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~Vw~k  308 (407)
T KOG2130|consen  229 TVDEGGKQPDEIITWFSTIYPRTQLPSWPDEYKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFVWHK  308 (407)
T ss_pred             cccccCCCCcceechhhhccccccCCCCccccCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCceeeec
Confidence            99999989999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCchhhHHHHHHHhc
Q psy11730        478 TIRGRPKLSKKWYRKLKT  495 (496)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~  495 (496)
                      |++||||+|++|++.|+.
T Consensus       309 tv~Grpkls~~w~~~L~~  326 (407)
T KOG2130|consen  309 TVRGRPKLSRKWARLLAL  326 (407)
T ss_pred             ccCCCcchhhHHHHHHhh
Confidence            999999999999999975

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=99.94  E-value=3.9e-28  Score=236.51  Aligned_cols=124  Identities=33%  Similarity=0.593  Sum_probs=89.7

Q ss_pred             HHHHHHHhcCCCCcEEEecCCCCCcCCCCCC-----HHHHHhhcCCeeEEeeecCC------C---------c--cccCH
Q psy11730         65 PQEFIEKYEKPNKPVVIKGVTENWNATYKWT-----LEKLGKKYRNQKFKCGEDNH------G---------Y--SKLGK  122 (496)
Q Consensus        65 ~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt-----~~~L~~~~g~~~v~v~~~~~------~---------~--~~m~~  122 (496)
                      |+||.++|+.+++||||+|++.+|||+++|+     .+||.+++|+..|.+.....      +         .  ..|+|
T Consensus         1 p~eF~~~~~~~~~PvVi~g~~~~w~a~~~W~~~~~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T PF13621_consen    1 PEEFFERYVKPNKPVVIRGAAADWPAFQKWTDDEYLLDYLKEKYGDVPVPVRDSPNGISDSFGYNDDRKFVNFERERMPF   80 (251)
T ss_dssp             -HHHHHHTCCTT--EEEESSSTTCCHHHH-S-----HHHHHHHHTSSEEEEEEEST--SSBTS-B-GCCCTCEEEEEEEH
T ss_pred             CHHHHHHHhCCCCCEEEeCCccCCchhhhccchhHHHHHHHHHcCCeEEEEEecCCcccccccccccccccCCeeEECcH
Confidence            6899999999999999999999999999999     59999999999999974321      1         1  29999


Q ss_pred             HHHHHHhhcCCCC----CCCC-----ccccccccccCCCCCCCchhhhcccCCCCCCCccceEecCCCCccccccCCCCC
Q psy11730        123 KYRNQKFKCGEDN----HGYS-----HPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGT  193 (496)
Q Consensus       123 ~~f~~~~~~~~~~----p~y~-----~~~~~~L~~d~~~P~~f~~d~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~  193 (496)
                      ++|++.+....+.    ++|+     ....+.|.++..+|  +..+++.     ..+...++|||++||+|++|+|+..+
T Consensus        81 ~~f~~~~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~~~~~--~~~~~~~-----~~~~~~~l~ig~~gs~t~lH~D~~~n  153 (251)
T PF13621_consen   81 RDFLDRLRANRDQRDKPYYYLQNWNLFEDFPELREDNDLP--FPPELFG-----KEPQSSNLWIGPPGSFTPLHYDPSHN  153 (251)
T ss_dssp             HHHHHHHHHSCHSTSSSEEEEEEETHHHHSHHHHCCS-CH--HHHCHSC-----CHCCEEEEEEE-TTEEEEEEE-SSEE
T ss_pred             HHHHHHHHhcccccCCceEEEecCchHHHhhhhhhccccc--cchhhcc-----cCccccEEEEeCCCceeeeeECchhh
Confidence            9999998887632    2443     24568888885555  3344441     12445678999999999999999654


Q ss_pred             CC
Q psy11730        194 NP  195 (496)
Q Consensus       194 ~~  195 (496)
                      .+
T Consensus       154 ~~  155 (251)
T PF13621_consen  154 LL  155 (251)
T ss_dssp             EE
T ss_pred             hh
Confidence            44

...

>KOG2131|consensus

Probab=99.90  E-value=2.7e-24  Score=207.90  Aligned_cols=153  Identities=17%  Similarity=0.112  Sum_probs=99.8

Q ss_pred             CCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCCCCCcCC----CCCCH------------HHHHhhcCCeeEEeeecC
Q psy11730         51 VKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNAT----YKWTL------------EKLGKKYRNQKFKCGEDN  114 (496)
Q Consensus        51 ~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~----~~Wt~------------~~L~~~~g~~~v~v~~~~  114 (496)
                      .+..|+|+-.+.+++..|.+.|..++.||+|.++..+|+|.    ..|..            .|.+.+.-+..++|..++
T Consensus        26 lr~~v~r~~g~~~d~~~~a~~~~~k~~~v~is~v~~d~~~~~~~~~s~~dl~~~~~l~n~~~~f~k~~v~~~~~~v~~~~  105 (427)
T KOG2131|consen   26 LRPCVLRLIGPTADYGDFAERDTHKRPGVLISYVLEDWPCVSRDNESGADLNNNPDLKNFARSFAKRIVQNGDKNVFLCD  105 (427)
T ss_pred             hhhhhhhhcccccCcccchhhhcccCCCccccccccCcccccCCCcchhhhccCcchhHHHHHHhHHHHhcCCccccccc
Confidence            56689998788899999999999999999999999999998    44521            122222222222222222


Q ss_pred             CCc----c--ccCHHHHHHHhhcCCC------------------------C-CCCCccc--cccc--cccCCCCCCCchh
Q psy11730        115 HGY----S--KLGKKYRNQKFKCGED------------------------N-HGYSHPR--RKKL--LDDYEVPIYFQDD  159 (496)
Q Consensus       115 ~~~----~--~m~~~~f~~~~~~~~~------------------------~-p~y~~~~--~~~L--~~d~~~P~~f~~d  159 (496)
                      ..+    .  .+++.+|+.-+.+...                        . ++|..+.  ...+  ..-|..|++|+.|
T Consensus       106 ~s~f~~~~~Le~ny~d~~v~~a~~~e~e~~~l~lad~~~~e~~~~~~~~q~p~ly~kDwHL~~~~d~~~~~~~pd~F~~d  185 (427)
T KOG2131|consen  106 LSLFPDYEYLERNYGDFVVPVANCNEKERYSLKLADWEFREEQVQLACPQAPSLYGKDWHLYRFLDNDFPYWTPDLFAKD  185 (427)
T ss_pred             cccCccHHHHHhhhhhcchhhccccchhhhhhhhccchhHHHhHhhhcCCCccccccchheeeecCcccccccchhhhhc
Confidence            111    1  4444444433222111                        1 1232211  1111  2235689999887


Q ss_pred             -hhcccCCCCCCCccceEecCCCCccccccCCCCCCCcccccCCC
Q psy11730        160 -LFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDD  203 (496)
Q Consensus       160 -~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~~~~~~~~~~~  203 (496)
                       +.+++.....++||+++|||+||+||+|.|.+++..|.++|+|+
T Consensus       186 wlne~~i~~~~ddyrFvy~Gp~gSwtp~HaDVf~s~swS~nicG~  230 (427)
T KOG2131|consen  186 WLNEFVIDGESDDYRFVYAGPAGSWTPFHADVFHSPSWSVNICGR  230 (427)
T ss_pred             ccchhhccCCCCceeEEEeccCCCCCccchhhhcCCcceeeeecc
Confidence             55666555678999999999999999999999999988888866

>KOG2508|consensus

Probab=99.73  E-value=1.2e-17  Score=161.48  Aligned_cols=147  Identities=21%  Similarity=0.268  Sum_probs=106.3

Q ss_pred             CCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCCCCCcCCCCCCH-HHHHhhcCCeeEEeeecCCCcc-----------
Q psy11730         51 VKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTL-EKLGKKYRNQKFKCGEDNHGYS-----------  118 (496)
Q Consensus        51 ~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~-~~L~~~~g~~~v~v~~~~~~~~-----------  118 (496)
                      ..-.|.+.| ..+||-+|+++|+.+|+||||+.+..+|||.++|+. +||.+..||..|.|.-+..||.           
T Consensus        20 vp~~v~~lD-~~Ptpl~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd~vvsvaitPngyadgav~~g~e~f   98 (437)
T KOG2508|consen   20 VPVLVNLLD-LTPTPLDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGDIVVSVAITPNGYADGAVMSGNEMF   98 (437)
T ss_pred             ccccccccc-CCCchHHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccCeEEEEEeCCCCccccccccCccee
Confidence            455677876 568999999999999999999999999999999997 5999999999999986555432           


Q ss_pred             ------ccCHHHHHHHhhcCCCCC--CCCccc-------cccccccCCCCCC-CchhhhcccCCCCCCCccceEecCCCC
Q psy11730        119 ------KLGKKYRNQKFKCGEDNH--GYSHPR-------RKKLLDDYEVPIY-FQDDLFQYAGEDKRPPYRWFVMGPARS  182 (496)
Q Consensus       119 ------~m~~~~f~~~~~~~~~~p--~y~~~~-------~~~L~~d~~~P~~-f~~d~~~~~~~~~~p~~~w~~iG~~gs  182 (496)
                            +|++.+-+..+.+....+  .|..++       .|.+..|...-++ +....|     ...|+...||||-+.+
T Consensus        99 ~~pae~KlklsevL~vl~~~~~~~~Vly~qkQ~snl~~elp~la~Dl~~~d~~wa~eaf-----gk~PdavNlWiG~~~a  173 (437)
T KOG2508|consen   99 IKPAEQKLKLSEVLYVLTQYDESNEVLYGQKQNSNLVKELPPLATDLLLTDFSWAPEAF-----GKVPDAVNLWIGKSEA  173 (437)
T ss_pred             echhhhhccchhhheehhcccCCCceeehhhhcccccccccccccccccccccccHHHh-----CCChhheeeeeccccc
Confidence                  455555555444433322  444333       3444444444222 233333     2457778899999999


Q ss_pred             ccccccCCCCCCCcccccCCCCCccccCCCC
Q psy11730        183 GTGIHIDPLGTNPDDGDVKDDSPAVESKEFK  213 (496)
Q Consensus       183 ~T~lH~D~~~~~~~~~~~~~~~~~~~~~~~~  213 (496)
                      +|.||.|++.|..          |++.-+||
T Consensus       174 vTSlHkDhyENlY----------aViSGeKh  194 (437)
T KOG2508|consen  174 VTSLHKDHYENLY----------AVISGEKH  194 (437)
T ss_pred             ccccccccccceE----------EEEeccce
Confidence            9999999999999          66665555

>KOG2132|consensus

Probab=99.70  E-value=5.3e-18  Score=163.06  Aligned_cols=131  Identities=21%  Similarity=0.221  Sum_probs=101.3

Q ss_pred             CCCCCHHHHHHHhcCCCCcEEEecCCCCCcCCCCCCHHHHHhhcCCeeEEeeecC------CCccccCHHHHHHHhhcCC
Q psy11730         60 VKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDN------HGYSKLGKKYRNQKFKCGE  133 (496)
Q Consensus        60 ~~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~~L~~~~g~~~v~v~~~~------~~~~~m~~~~f~~~~~~~~  133 (496)
                      .+.++.++|..+++.+++|++++|.+.+|||+++|..+||...-|+..|+++...      +...-|++.+|+..+....
T Consensus       132 ~~~~~l~~~l~d~~~~~~p~~~l~~~~hwpa~~kw~l~~l~~va~~rTvpvEvg~~y~~~~w~q~l~t~~~g~~R~~~~~  211 (355)
T KOG2132|consen  132 EDRLSLQEFLNDTVGRGTPVILLGFNWHWPAIQKWSLGYLQQVAGNRTVPVEVGSTYADEDWSQNLMTQIKGIKRCILFE  211 (355)
T ss_pred             ccchHHHHHHHHhhcCCCceEEecccccchHhhhcchhHHHhcccceeeeeecccccchhHHHhhhHHHhhhhhhhhcCC
Confidence            4678999999999999999999999999999999999999999999999887321      1112788888887655443


Q ss_pred             C-CCCC-----CccccccccccCCCCCCCchhhhcccCCCCCCCccceEecCCCCccccccCCCCCCC
Q psy11730        134 D-NHGY-----SHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNP  195 (496)
Q Consensus       134 ~-~p~y-----~~~~~~~L~~d~~~P~~f~~d~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~~~  195 (496)
                      . ++.|     ++++.+++..|+.+|+|...-.|+     .+...+..|+||+|+.||+|.||.+|..
T Consensus       212 p~~~~YlAqh~lfdqi~elk~Di~iPDyc~~~~f~-----~~~v~~~~w~GpaGtV~pih~dp~hNi~  274 (355)
T KOG2132|consen  212 PRECLYLAQHHLFDQIPELKFDISIPDYCSFPNFE-----NEVVDINAWIGPAGTVLPIHMDPWHNIL  274 (355)
T ss_pred             ccccchhhhhhhhccchhhhhccCCCceeecCCCC-----ccccceeEEeccCCceecccccccccee
Confidence            3 3433     356789999999999886333221     1122334556999999999999998888

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.49  E-value=2.7e-14  Score=134.11  Aligned_cols=137  Identities=21%  Similarity=0.261  Sum_probs=97.4

Q ss_pred             CCccccceeecccccCCCccccCceeeecchHHHHHHHHhCC----CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeC
Q psy11730        245 PLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV----AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDY  320 (496)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~  320 (496)
                      +.+..+.+..+...++....+-.....-+  -.-..++.+..    .+.|.+|||+|||.|.++..||+.| ..|+|+|+
T Consensus        13 d~~e~~~F~~la~~wwd~~g~f~~LH~~N--~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~   89 (243)
T COG2227          13 DYKELDKFEALASRWWDPEGEFKPLHKIN--PLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDA   89 (243)
T ss_pred             CHHHHHHHHHHHhhhcCCCCceeeeeeec--cchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-CeeEEecC
Confidence            33444566666666665432211111111  11123333333    3789999999999999999999999 68999999


Q ss_pred             CHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        321 NQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       321 s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ++++++.|+..+...+    -++.+.....+++... .++||+|+|.++++|+++++.++..+  .+.|++
T Consensus        90 se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~-~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G  155 (243)
T COG2227          90 SEKPIEVAKLHALESG----VNIDYRQATVEDLASA-GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGG  155 (243)
T ss_pred             ChHHHHHHHHhhhhcc----ccccchhhhHHHHHhc-CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCc
Confidence            9999999998775433    3466777777777654 38999999999999999999988763  556654

>KOG1499|consensus

Probab=99.46  E-value=4.8e-14  Score=138.88  Aligned_cols=165  Identities=22%  Similarity=0.309  Sum_probs=129.2

Q ss_pred             cccCCccccceeecccccCCCccccCceeeecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeC
Q psy11730        242 LRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDY  320 (496)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~  320 (496)
                      ....||..+....+|++|+.+.+++..|+         ..+..+. .++++.|||+|||||.+++++|+.|+.+|+|+|.
T Consensus        21 ~~~~Yf~sY~~~~iheeML~D~VRt~aYr---------~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~   91 (346)
T KOG1499|consen   21 SDDYYFDSYAHFGIHEEMLKDSVRTLAYR---------NAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEA   91 (346)
T ss_pred             hhhhhhhhhhchHHHHHHHhhhhhHHHHH---------HHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEec
Confidence            56688999999999999999999988777         3333333 4789999999999999999999999999999999


Q ss_pred             CHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccc---cchHhHh---hee-----eecCCC
Q psy11730        321 NQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSV---ANYNKLL---TVW-----CLFPTH  389 (496)
Q Consensus       321 s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~---~~~~~~~---~~~-----~l~p~~  389 (496)
                      |.-+ +.|.+-.. .| +...-|+++++.++++..+ .++.|+|+|.++-|++   .-++.++   .+|     .++|..
T Consensus        92 S~ia-~~a~~iv~-~N-~~~~ii~vi~gkvEdi~LP-~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~  167 (346)
T KOG1499|consen   92 SSIA-DFARKIVK-DN-GLEDVITVIKGKVEDIELP-VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDR  167 (346)
T ss_pred             hHHH-HHHHHHHH-hc-CccceEEEeecceEEEecC-ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcccc
Confidence            9766 55544322 22 2345699999999998664 5899999999988877   2233333   123     666665


Q ss_pred             CCcccEEEeeccCCcccccccchhhHhcCCCCC
Q psy11730        390 TPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQL  422 (496)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (496)
                      +   .+++.+..+..+....+.||.++|+..++
T Consensus       168 a---~l~l~~i~d~~~~~~~i~fW~~Vygfdms  197 (346)
T KOG1499|consen  168 A---TLYLAAIEDDSYKDDKIGFWDDVYGFDMS  197 (346)
T ss_pred             c---eEEEEeccCchhhhhhcCccccccccchh
Confidence            5   68889999999999999999999996653

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.42  E-value=3.5e-13  Score=128.75  Aligned_cols=97  Identities=24%  Similarity=0.265  Sum_probs=86.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      +|.+|||||||||..++.+++.. ..+|+|+|+|+.|++.++++....+   ..+++|+.+|++++|++ +++||+|++.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~---~~~i~fv~~dAe~LPf~-D~sFD~vt~~  126 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG---VQNVEFVVGDAENLPFP-DNSFDAVTIS  126 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC---ccceEEEEechhhCCCC-CCccCEEEee
Confidence            68999999999999999998765 4899999999999999999875543   33499999999999976 8999999999


Q ss_pred             cccccccchHhHhhe--eeecCCC
Q psy11730        368 ETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      ..|.++++++.++++  +++.|++
T Consensus       127 fglrnv~d~~~aL~E~~RVlKpgG  150 (238)
T COG2226         127 FGLRNVTDIDKALKEMYRVLKPGG  150 (238)
T ss_pred             ehhhcCCCHHHHHHHHHHhhcCCe
Confidence            999999999999998  4888877

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.39  E-value=1.1e-12  Score=127.56  Aligned_cols=112  Identities=19%  Similarity=0.267  Sum_probs=92.5

Q ss_pred             ecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .++...-++.+.+...++ |.+|||||||+|.+++.+|+....+|+|+++|++|.+.++++....+  ...++++...|+
T Consensus        54 ~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~  131 (283)
T COG2230          54 EEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDY  131 (283)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEeccc
Confidence            455566677888877766 88999999999999999999988899999999999999998765543  346999999999


Q ss_pred             CCccccCCCceeEEEEccccccccc--hHhHhhee--eecCCC
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVAN--YNKLLTVW--CLFPTH  389 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~~--~~~~~~~~--~l~p~~  389 (496)
                      .++.    +.||.|+|.++++|+..  .+.+|+..  .|.|+|
T Consensus       132 rd~~----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G  170 (283)
T COG2230         132 RDFE----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGG  170 (283)
T ss_pred             cccc----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCc
Confidence            9874    55999999999999965  88888763  444544

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.35  E-value=4.4e-13  Score=130.34  Aligned_cols=100  Identities=18%  Similarity=0.159  Sum_probs=77.7

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      +++|++|||||||+|+++..|+..|++.|+|||.+.........-+...  +....+.++...+++++.  .+.||+|+|
T Consensus       113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~l--g~~~~~~~lplgvE~Lp~--~~~FDtVF~  188 (315)
T PF08003_consen  113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFL--GQDPPVFELPLGVEDLPN--LGAFDTVFS  188 (315)
T ss_pred             CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHh--CCCccEEEcCcchhhccc--cCCcCEEEE
Confidence            7899999999999999999999999999999999998876533221111  122334445467778776  578999999


Q ss_pred             ccccccccchHhHhhee--eecCCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      ..++||..++-..++..  .|.|+|.
T Consensus       189 MGVLYHrr~Pl~~L~~Lk~~L~~gGe  214 (315)
T PF08003_consen  189 MGVLYHRRSPLDHLKQLKDSLRPGGE  214 (315)
T ss_pred             eeehhccCCHHHHHHHHHHhhCCCCE
Confidence            99999999999988764  5666654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1270|consensus

Probab=99.34  E-value=7.2e-13  Score=125.27  Aligned_cols=96  Identities=27%  Similarity=0.360  Sum_probs=77.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCC----ceEEEecccCCccccCCCceeEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLE----KCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      .|++|||+|||+|.++..||+.| +.|+|||++++|++.|+... ..+.....    ++.+.+.++++.    .+.||.|
T Consensus        89 ~g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~-~~dP~~~~~~~y~l~~~~~~~E~~----~~~fDaV  162 (282)
T KOG1270|consen   89 LGMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHK-KMDPVLEGAIAYRLEYEDTDVEGL----TGKFDAV  162 (282)
T ss_pred             CCceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhh-hcCchhccccceeeehhhcchhhc----cccccee
Confidence            36889999999999999999999 58999999999999999873 33322233    366777777765    4569999


Q ss_pred             EEccccccccchHhHhhee--eecCCCC
Q psy11730        365 LTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       365 i~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +|.++++|+.+++.++...  .+.|++.
T Consensus       163 vcsevleHV~dp~~~l~~l~~~lkP~G~  190 (282)
T KOG1270|consen  163 VCSEVLEHVKDPQEFLNCLSALLKPNGR  190 (282)
T ss_pred             eeHHHHHHHhCHHHHHHHHHHHhCCCCc
Confidence            9999999999999998763  6677653

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.31  E-value=7.1e-12  Score=112.84  Aligned_cols=98  Identities=27%  Similarity=0.386  Sum_probs=78.7

Q ss_pred             CCCeEEEecCcCCHHHHHHH-HccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTL-MNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la-~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ++.+|||||||+|.++..++ +.++ .+++|+|+|++|++.|++.....+   ..+++|.++|+.+++....+.||+|++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~~~~D~I~~   79 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELEEKFDIIIS   79 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccCCCeeEEEE
Confidence            46799999999999999999 4444 789999999999999998654332   458999999999965321279999999


Q ss_pred             ccccccccchHhHhhee--eecCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ..+++++.++..+++..  .+.+++
T Consensus        80 ~~~l~~~~~~~~~l~~~~~~lk~~G  104 (152)
T PF13847_consen   80 NGVLHHFPDPEKVLKNIIRLLKPGG  104 (152)
T ss_dssp             ESTGGGTSHHHHHHHHHHHHEEEEE
T ss_pred             cCchhhccCHHHHHHHHHHHcCCCc
Confidence            99999999999888763  444444

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.30  E-value=7.2e-12  Score=123.08  Aligned_cols=101  Identities=22%  Similarity=0.242  Sum_probs=82.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ++.+|||||||+|.++..+++. +. .+|+|+|+|++|++.|+++..........+++++.+|+++++.. +++||+|++
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~-~~sfD~V~~  151 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD-DCYFDAITM  151 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC-CCCEeEEEE
Confidence            4789999999999999998876 43 68999999999999998654221112345899999999998764 679999999


Q ss_pred             ccccccccchHhHhhee--eecCCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +.++++++++..+++++  .|.|+|.
T Consensus       152 ~~~l~~~~d~~~~l~ei~rvLkpGG~  177 (261)
T PLN02233        152 GYGLRNVVDRLKAMQEMYRVLKPGSR  177 (261)
T ss_pred             ecccccCCCHHHHHHHHHHHcCcCcE
Confidence            99999999999999884  6777663

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.30  E-value=4.6e-12  Score=124.71  Aligned_cols=113  Identities=24%  Similarity=0.282  Sum_probs=83.7

Q ss_pred             ecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      -++....++.+.+...++ |.+|||||||+|.+++.+++....+|+||.+|+++++.++++....+  ...++++..+|+
T Consensus        44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~  121 (273)
T PF02353_consen   44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDY  121 (273)
T ss_dssp             HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-G
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeec
Confidence            445556677888777765 78999999999999999999866799999999999999987765443  456899999998


Q ss_pred             CCccccCCCceeEEEEccccccc--cchHhHhhe--eeecCCCC
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSV--ANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~--~~~~~~~~~--~~l~p~~~  390 (496)
                      .+++    .+||.|+|.++++|+  .+.+.+++.  ..|.|+|.
T Consensus       122 ~~~~----~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~  161 (273)
T PF02353_consen  122 RDLP----GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGR  161 (273)
T ss_dssp             GG-------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEE
T ss_pred             cccC----CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcE
Confidence            8764    499999999999999  677888877  36677653

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.30  E-value=5.7e-12  Score=103.05  Aligned_cols=89  Identities=25%  Similarity=0.366  Sum_probs=73.7

Q ss_pred             EEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccc
Q psy11730        294 LDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       294 LDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      ||||||+|..+..+++.+..+|+|+|+|+++++.++++..      ..++.+..+|+++++.. +++||+|++..+++|+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~------~~~~~~~~~d~~~l~~~-~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK------NEGVSFRQGDAEDLPFP-DNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT------TSTEEEEESBTTSSSS--TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc------ccCchheeehHHhCccc-cccccccccccceeec
Confidence            8999999999999999977899999999999999988652      34566999999999765 7999999999999999


Q ss_pred             cchHhHhhe--eeecCCC
Q psy11730        374 ANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       374 ~~~~~~~~~--~~l~p~~  389 (496)
                      ++...++++  ..|.|+|
T Consensus        74 ~~~~~~l~e~~rvLk~gG   91 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGG   91 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCe
Confidence            999999887  3566654

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.29  E-value=3.4e-12  Score=122.89  Aligned_cols=99  Identities=22%  Similarity=0.224  Sum_probs=73.5

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||+|||||.++..+++. ++ .+|+|+|+|+.|++.++++....+   ..+++++++|+++++.. +++||+|+
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~---~~~i~~v~~da~~lp~~-d~sfD~v~  121 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG---LQNIEFVQGDAEDLPFP-DNSFDAVT  121 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB--S--TT-EEEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC---CCCeeEEEcCHHHhcCC-CCceeEEE
Confidence            36789999999999999998875 33 699999999999999998765432   34999999999999876 79999999


Q ss_pred             EccccccccchHhHhhe--eeecCCCC
Q psy11730        366 TSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       366 ~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      +...++.++|.+..+++  +.|.|+|.
T Consensus       122 ~~fglrn~~d~~~~l~E~~RVLkPGG~  148 (233)
T PF01209_consen  122 CSFGLRNFPDRERALREMYRVLKPGGR  148 (233)
T ss_dssp             EES-GGG-SSHHHHHHHHHHHEEEEEE
T ss_pred             HHhhHHhhCCHHHHHHHHHHHcCCCeE
Confidence            99999999999999988  47888774

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02244 tocopherol O-methyltransferase

Probab=99.28  E-value=1.2e-11  Score=126.20  Aligned_cols=112  Identities=16%  Similarity=0.128  Sum_probs=89.2

Q ss_pred             HHHHHHHHhCCCC------CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        276 FDLLNFIKDNVAV------DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       276 ~~l~~~l~~~~~~------~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      ..+++.+.+...+      ++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++....  +...+++|+.+|
T Consensus        99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--g~~~~v~~~~~D  176 (340)
T PLN02244         99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--GLSDKVSFQVAD  176 (340)
T ss_pred             HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEEcC
Confidence            3455555554443      47799999999999999999876679999999999999988754332  234579999999


Q ss_pred             cCCccccCCCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730        350 WGSLSAVIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       350 ~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      +.+++.. +++||+|++..+++|+++...++++  ..|.|+|.
T Consensus       177 ~~~~~~~-~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~  218 (340)
T PLN02244        177 ALNQPFE-DGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGR  218 (340)
T ss_pred             cccCCCC-CCCccEEEECCchhccCCHHHHHHHHHHHcCCCcE
Confidence            9887654 6899999999999999999998887  36777663

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.28  E-value=1.1e-11  Score=125.34  Aligned_cols=106  Identities=23%  Similarity=0.231  Sum_probs=83.9

Q ss_pred             HHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC
Q psy11730        281 FIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS  359 (496)
Q Consensus       281 ~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  359 (496)
                      .+.... ++++++|||||||+|.++..++..|+..|+|+|+|+.|+..++.....  .....++.|+.+++++++.  .+
T Consensus       113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~--~~~~~~i~~~~~d~e~lp~--~~  188 (322)
T PRK15068        113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKL--LGNDQRAHLLPLGIEQLPA--LK  188 (322)
T ss_pred             HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHh--cCCCCCeEEEeCCHHHCCC--cC
Confidence            334343 478899999999999999999999988899999999998754332111  1123579999999998876  67


Q ss_pred             ceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        360 KFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       360 ~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      .||+|+|..++||..++..+++..  .|.|+|.
T Consensus       189 ~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~  221 (322)
T PRK15068        189 AFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGE  221 (322)
T ss_pred             CcCEEEECChhhccCCHHHHHHHHHHhcCCCcE
Confidence            899999999999999999998873  6666654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.28  E-value=7.7e-12  Score=106.16  Aligned_cols=98  Identities=23%  Similarity=0.282  Sum_probs=72.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.+++.+++. ...+|+|+|+|++|++.++++...  .....+++++++|+ .......+.||+|++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE--EGLSDRITFVQGDA-EFDPDFLEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH--TTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh--cCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence            4789999999999999999983 557899999999999999987633  23568999999999 3333325789999999


Q ss_pred             c-ccccc---cchHhHhhee--eecCCC
Q psy11730        368 E-TIYSV---ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~-~l~~~---~~~~~~~~~~--~l~p~~  389 (496)
                      . .++++   ++...+++..  .|.|++
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG  105 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGG  105 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCc
Confidence            9 54433   3334455432  445543

...

>TIGR00452 methyltransferase, putative

Probab=99.26  E-value=1.4e-11  Score=123.28  Aligned_cols=107  Identities=19%  Similarity=0.175  Sum_probs=82.8

Q ss_pred             HHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC
Q psy11730        280 NFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS  359 (496)
Q Consensus       280 ~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  359 (496)
                      ..+.....+++++|||||||+|.++..++..|+..|+|+|+|+.|+..++.....  .....++.+...++++++.  ..
T Consensus       112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~--~~~~~~v~~~~~~ie~lp~--~~  187 (314)
T TIGR00452       112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKL--LDNDKRAILEPLGIEQLHE--LY  187 (314)
T ss_pred             HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHH--hccCCCeEEEECCHHHCCC--CC
Confidence            3333334578999999999999999999999988999999999998764321111  1123577888888888765  35


Q ss_pred             ceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        360 KFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       360 ~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      .||+|+|+.+++|..++..++++.  .|.|+|.
T Consensus       188 ~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~  220 (314)
T TIGR00452       188 AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGE  220 (314)
T ss_pred             CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCE
Confidence            899999999999999999988873  6777664

Known examples to date are restricted to the proteobacteria.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.25  E-value=7.7e-12  Score=125.73  Aligned_cols=99  Identities=24%  Similarity=0.285  Sum_probs=81.2

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ..+.+|||||||+|.++..+++.+ .+|+|||+|++|++.|+.+....  ....++.++++++++++.. +++||+|++.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~--~~~~~i~~~~~dae~l~~~-~~~FD~Vi~~  205 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMD--PVTSTIEYLCTTAEKLADE-GRKFDAVLSL  205 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhc--CcccceeEEecCHHHhhhc-cCCCCEEEEh
Confidence            457799999999999999988765 58999999999999998653211  1235799999999887653 5799999999


Q ss_pred             cccccccchHhHhhee--eecCCCC
Q psy11730        368 ETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      .+++|+.++..+++..  +|.|+|.
T Consensus       206 ~vLeHv~d~~~~L~~l~r~LkPGG~  230 (322)
T PLN02396        206 EVIEHVANPAEFCKSLSALTIPNGA  230 (322)
T ss_pred             hHHHhcCCHHHHHHHHHHHcCCCcE
Confidence            9999999999999873  6677663

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.23  E-value=1.5e-11  Score=120.44  Aligned_cols=101  Identities=22%  Similarity=0.257  Sum_probs=82.2

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ...+.+|||+|||+|.++..+++.+ .+|+|+|+|++|++.|+++....  +...+++++++|+.++.....++||+|++
T Consensus        42 ~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~--g~~~~v~~~~~d~~~l~~~~~~~fD~V~~  118 (255)
T PRK11036         42 PPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAK--GVSDNMQFIHCAAQDIAQHLETPVDLILF  118 (255)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhc--CCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence            3457799999999999999999886 58999999999999998765332  23467899999998875434679999999


Q ss_pred             ccccccccchHhHhhee--eecCCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      ..+++|+.++..+++..  .|.|+|.
T Consensus       119 ~~vl~~~~~~~~~l~~~~~~LkpgG~  144 (255)
T PRK11036        119 HAVLEWVADPKSVLQTLWSVLRPGGA  144 (255)
T ss_pred             hhHHHhhCCHHHHHHHHHHHcCCCeE
Confidence            99999999999888763  6666653

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.22  E-value=3.5e-11  Score=117.93  Aligned_cols=91  Identities=22%  Similarity=0.308  Sum_probs=76.8

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.++++          +++++.+|++++..  .++||+|++
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~--~~~fD~v~~   95 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWKP--KPDTDVVVS   95 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCCC--CCCceEEEE
Confidence            4578999999999999999988754 6899999999999998753          47789999887642  579999999


Q ss_pred             ccccccccchHhHhhee--eecCCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +.+++|++++..+++++  .|.|+|.
T Consensus        96 ~~~l~~~~d~~~~l~~~~~~LkpgG~  121 (255)
T PRK14103         96 NAALQWVPEHADLLVRWVDELAPGSW  121 (255)
T ss_pred             ehhhhhCCCHHHHHHHHHHhCCCCcE
Confidence            99999999999888773  6777663

>PRK05785 hypothetical protein; Provisional

Probab=99.21  E-value=5.1e-11  Score=114.50  Aligned_cols=97  Identities=20%  Similarity=0.231  Sum_probs=78.0

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      +++.+..... .+.+|||||||||.++..+++....+|+|+|+|++|++.|+++.           .++++|+++++.. 
T Consensus        41 ~~~~l~~~~~-~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-----------~~~~~d~~~lp~~-  107 (226)
T PRK05785         41 LVKTILKYCG-RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-----------DKVVGSFEALPFR-  107 (226)
T ss_pred             HHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-----------ceEEechhhCCCC-
Confidence            4444443322 36799999999999999998875568999999999999987542           3478898888764 


Q ss_pred             CCceeEEEEccccccccchHhHhhee--eecC
Q psy11730        358 HSKFDIILTSETIYSVANYNKLLTVW--CLFP  387 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p  387 (496)
                      +++||+|++..+++++++++.++++.  .+.|
T Consensus       108 d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp  139 (226)
T PRK05785        108 DKSFDVVMSSFALHASDNIEKVIAEFTRVSRK  139 (226)
T ss_pred             CCCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence            78999999999999999999999873  5665

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.20  E-value=2.2e-10  Score=111.87  Aligned_cols=101  Identities=20%  Similarity=0.305  Sum_probs=80.1

Q ss_pred             HHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        279 LNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       279 ~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      ++.+.+... ..+.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++.        ..+.++.+|+++++.. 
T Consensus        31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~-  100 (251)
T PRK10258         31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLA-  100 (251)
T ss_pred             HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCC-
Confidence            344444333 246799999999999999988765 68999999999999988653        1346788999887654 


Q ss_pred             CCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        358 HSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +++||+|+++.++++..++..+++++  .+.|+|
T Consensus       101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG  134 (251)
T PRK10258        101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGG  134 (251)
T ss_pred             CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCe
Confidence            57899999999999999999998874  566665

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.18  E-value=5e-12  Score=105.13  Aligned_cols=93  Identities=20%  Similarity=0.198  Sum_probs=56.6

Q ss_pred             EEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEEEccccc
Q psy11730        294 LDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIILTSETIY  371 (496)
Q Consensus       294 LDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~~~l~  371 (496)
                      ||||||+|.++..++.... .+++|+|+|+.|++.++++.....   ..+......+..+..... .++||+|++..+++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence            7999999999999988744 789999999999988888865433   223333443333332221 25999999999999


Q ss_pred             cccchHhHhhee--eecCCC
Q psy11730        372 SVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       372 ~~~~~~~~~~~~--~l~p~~  389 (496)
                      |++++..+++..  .|.|+|
T Consensus        78 ~l~~~~~~l~~~~~~L~pgG   97 (99)
T PF08242_consen   78 HLEDIEAVLRNIYRLLKPGG   97 (99)
T ss_dssp             --S-HHHHHHHHTTT-TSS-
T ss_pred             hhhhHHHHHHHHHHHcCCCC
Confidence            999999988863  555554

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.17  E-value=7.6e-11  Score=110.93  Aligned_cols=97  Identities=27%  Similarity=0.350  Sum_probs=76.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||+|||+|.++..+++.| .+|+|+|+|+.|++.+++.....   ...++++...|+.+.+.  .++||+|++.
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~~~--~~~fD~I~~~  102 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAE---NLDNLHTAVVDLNNLTF--DGEYDFILST  102 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHc---CCCcceEEecChhhCCc--CCCcCEEEEe
Confidence            357899999999999999999886 48999999999999988765332   23568889999887654  4679999999


Q ss_pred             ccccccc--chHhHhhee--eecCCCC
Q psy11730        368 ETIYSVA--NYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       368 ~~l~~~~--~~~~~~~~~--~l~p~~~  390 (496)
                      .++++++  +...+++.+  .|.|+|.
T Consensus       103 ~~~~~~~~~~~~~~l~~i~~~LkpgG~  129 (197)
T PRK11207        103 VVLMFLEAKTIPGLIANMQRCTKPGGY  129 (197)
T ss_pred             cchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence            9998874  456666653  5666653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.17  E-value=8.1e-11  Score=108.10  Aligned_cols=111  Identities=23%  Similarity=0.285  Sum_probs=82.7

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCC-eEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAA-HVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      -.++..|++.+...   .+++|||+|||+|.+++.+++.++. +|+++|+|+.+++.++++...++   ..+++++..|+
T Consensus        17 d~~t~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~---~~~v~~~~~d~   90 (170)
T PF05175_consen   17 DAGTRLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG---LENVEVVQSDL   90 (170)
T ss_dssp             HHHHHHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT---CTTEEEEESST
T ss_pred             CHHHHHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC---ccccccccccc
Confidence            34667788888876   6789999999999999999998885 89999999999999887654433   33399999998


Q ss_pred             CCccccCCCceeEEEEccccccccc-----hHhHhhe--eeecCCCC
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVAN-----YNKLLTV--WCLFPTHT  390 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~~-----~~~~~~~--~~l~p~~~  390 (496)
                      .+...  ..+||+|++++|++.-.+     ...+++.  ..|.|+|.
T Consensus        91 ~~~~~--~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~  135 (170)
T PF05175_consen   91 FEALP--DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGR  135 (170)
T ss_dssp             TTTCC--TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccccc--ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCE
Confidence            76443  589999999999776644     3444433  36667664

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.15  E-value=1.4e-10  Score=113.66  Aligned_cols=101  Identities=18%  Similarity=0.247  Sum_probs=80.6

Q ss_pred             HHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        279 LNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       279 ~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      +..+..... .++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.++++.        .++.|+.+|+.++.. 
T Consensus        20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~~-   90 (258)
T PRK01683         20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQP-   90 (258)
T ss_pred             HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccCC-
Confidence            333334333 3478999999999999999988754 79999999999999987642        468889999876643 


Q ss_pred             CCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        357 IHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                       ..+||+|+++.+++|+.+...+++.+  .|.|+|
T Consensus        91 -~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG  124 (258)
T PRK01683         91 -PQALDLIFANASLQWLPDHLELFPRLVSLLAPGG  124 (258)
T ss_pred             -CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCc
Confidence             56999999999999999998888774  566665

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=1.6e-10  Score=104.66  Aligned_cols=90  Identities=23%  Similarity=0.276  Sum_probs=76.9

Q ss_pred             HHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        276 FDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       276 ~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      ..++..+....++.|+.|+|+|||||.+++.++..|+..|+|+|+++++++.++++...    ...++.|+.+|+.++  
T Consensus        32 a~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~----l~g~v~f~~~dv~~~--  105 (198)
T COG2263          32 AYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE----LLGDVEFVVADVSDF--  105 (198)
T ss_pred             HHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh----hCCceEEEEcchhhc--
Confidence            34455555667789999999999999999999999999999999999999999987644    467899999999887  


Q ss_pred             cCCCceeEEEEccccccc
Q psy11730        356 VIHSKFDIILTSETIYSV  373 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~  373 (496)
                        ...+|.++.|+++--.
T Consensus       106 --~~~~dtvimNPPFG~~  121 (198)
T COG2263         106 --RGKFDTVIMNPPFGSQ  121 (198)
T ss_pred             --CCccceEEECCCCccc
Confidence              5788999999998655

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.14  E-value=9.8e-11  Score=107.81  Aligned_cols=122  Identities=28%  Similarity=0.431  Sum_probs=74.9

Q ss_pred             cCceeeecchHHHHHHHHhCC-------CCCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCccccccc
Q psy11730        266 EGGYKIWECTFDLLNFIKDNV-------AVDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNT  337 (496)
Q Consensus       266 ~~~~~~~~~~~~l~~~l~~~~-------~~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~  337 (496)
                      ..|.++|+++..|+++|....       ...+++|||||||+|..++.+++. +..+|+..|.++ .+..++.+. ..|.
T Consensus        15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni-~~N~   92 (173)
T PF10294_consen   15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNI-ELNG   92 (173)
T ss_dssp             --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHH-HTT-
T ss_pred             CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHH-Hhcc
Confidence            457889999999999999952       467899999999999999999998 678999999999 777666443 3332


Q ss_pred             -CCCCceEEEecccCCcc---ccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        338 -DNLEKCKFYHGDWGSLS---AVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       338 -~~~~~v~~~~~d~~~~~---~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                       ....++.+...+|.+..   ......||+|++.+++|.....+.+++..  .+.|++
T Consensus        93 ~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~  150 (173)
T PF10294_consen   93 SLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNG  150 (173)
T ss_dssp             -------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-T
T ss_pred             ccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCC
Confidence             34678899999997632   11135899999999999998888888763  344443

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.12  E-value=7.9e-11  Score=98.38  Aligned_cols=85  Identities=22%  Similarity=0.267  Sum_probs=65.4

Q ss_pred             EEEecCcCCHHHHHHHHcc---C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE-c
Q psy11730        293 VLDVGCGAGLLGLYTLMNG---A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT-S  367 (496)
Q Consensus       293 VLDlGcGtG~~~~~la~~~---~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~-~  367 (496)
                      |||||||+|..+..++...   + .+++|+|+|++|++.++++....    ..+++++++|+.+++.. .++||+|++ .
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~-~~~~D~v~~~~   75 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFS-DGKFDLVVCSG   75 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHH-SSSEEEEEE-T
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCccc-CCCeeEEEEcC
Confidence            7999999999999998874   3 79999999999999998776442    23899999999998754 679999999 4


Q ss_pred             cccccccc--hHhHhhe
Q psy11730        368 ETIYSVAN--YNKLLTV  382 (496)
Q Consensus       368 ~~l~~~~~--~~~~~~~  382 (496)
                      .+++|+++  ...+++.
T Consensus        76 ~~~~~~~~~~~~~ll~~   92 (101)
T PF13649_consen   76 LSLHHLSPEELEALLRR   92 (101)
T ss_dssp             TGGGGSSHHHHHHHHHH
T ss_pred             CccCCCCHHHHHHHHHH
Confidence            55888753  3445543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.12  E-value=2.5e-10  Score=112.23  Aligned_cols=106  Identities=24%  Similarity=0.266  Sum_probs=82.5

Q ss_pred             HHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        279 LNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       279 ~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      ...+.....+ ++.+|||||||+|..+..++.....+|+|+|+|+.|++.++++...     ..++.+..+|+.+.+.. 
T Consensus        41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~~~-  114 (263)
T PTZ00098         41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKDFP-  114 (263)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCCCC-
Confidence            3444444443 5789999999999999998876557999999999999998876522     35799999998876543 


Q ss_pred             CCceeEEEEcccccccc--chHhHhhee--eecCCCC
Q psy11730        358 HSKFDIILTSETIYSVA--NYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~--~~~~~~~~~--~l~p~~~  390 (496)
                      +++||+|++..+++|++  +...++++.  .|.|++.
T Consensus       115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~  151 (263)
T PTZ00098        115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGI  151 (263)
T ss_pred             CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcE
Confidence            57999999999998885  777788763  6677664

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.11  E-value=2.6e-10  Score=109.89  Aligned_cols=105  Identities=26%  Similarity=0.330  Sum_probs=83.7

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+++.+.......+.+|||||||+|.++..+++.++ .+++|+|+|+.++..++.+.       ..++.++.+|+++.+.
T Consensus        22 ~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~   94 (240)
T TIGR02072        22 RLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL-------SENVQFICGDAEKLPL   94 (240)
T ss_pred             HHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-------CCCCeEEecchhhCCC
Confidence            344444433334567999999999999999998876 67999999999999887654       2378899999988765


Q ss_pred             cCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        356 VIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      . .++||+|++..+++|..++..++..+  .+.|+|
T Consensus        95 ~-~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G  129 (240)
T TIGR02072        95 E-DSSFDLIVSNLALQWCDDLSQALSELARVLKPGG  129 (240)
T ss_pred             C-CCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCc
Confidence            3 57899999999999999999888763  566655

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.10  E-value=3.5e-10  Score=120.84  Aligned_cols=97  Identities=26%  Similarity=0.305  Sum_probs=80.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||||||+|.+++.++.....+|+|+|+|+.|++.|+++..    ....+++|..+|+.+.+.. +++||+|+|..
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~----~~~~~v~~~~~d~~~~~~~-~~~fD~I~s~~  340 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI----GRKCSVEFEVADCTKKTYP-DNSFDVIYSRD  340 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh----cCCCceEEEEcCcccCCCC-CCCEEEEEECC
Confidence            477999999999999999988766789999999999999886542    2235789999999876643 57899999999


Q ss_pred             ccccccchHhHhhee--eecCCCC
Q psy11730        369 TIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       369 ~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +++|+++++.+++++  .|.|+|.
T Consensus       341 ~l~h~~d~~~~l~~~~r~LkpgG~  364 (475)
T PLN02336        341 TILHIQDKPALFRSFFKWLKPGGK  364 (475)
T ss_pred             cccccCCHHHHHHHHHHHcCCCeE
Confidence            999999999998873  6666653

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.10  E-value=1.7e-10  Score=105.58  Aligned_cols=84  Identities=20%  Similarity=0.270  Sum_probs=73.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc-cccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL-SAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~Ii~~  367 (496)
                      +|.+|||||||.|.+...|.+......+|+|++++.+..+.++          .+.++++|+++- ...++++||+||.+
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~d~sFD~VIls   82 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFPDQSFDYVILS   82 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCCCCCccEEehH
Confidence            5899999999999999999887778899999999999888765          467899998864 44558999999999


Q ss_pred             cccccccchHhHhhe
Q psy11730        368 ETIYSVANYNKLLTV  382 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~  382 (496)
                      .+++++.+++.++++
T Consensus        83 qtLQ~~~~P~~vL~E   97 (193)
T PF07021_consen   83 QTLQAVRRPDEVLEE   97 (193)
T ss_pred             hHHHhHhHHHHHHHH
Confidence            999999999999876

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.10  E-value=1e-10  Score=111.89  Aligned_cols=108  Identities=19%  Similarity=0.240  Sum_probs=89.1

Q ss_pred             cccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCc
Q psy11730        264 VYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEK  342 (496)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~  342 (496)
                      +...+|++--++..|+.+....   ..++|||||||+|.+++.+|++.. .+|+|||+.++|++.|+++...  +....+
T Consensus        22 q~~~~~~~~~DaiLL~~~~~~~---~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l--n~l~~r   96 (248)
T COG4123          22 QDRCGFRYGTDAILLAAFAPVP---KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL--NPLEER   96 (248)
T ss_pred             eCCCccccccHHHHHHhhcccc---cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh--Ccchhc
Confidence            4566788788888888888643   378999999999999999999855 8999999999999999876543  246789


Q ss_pred             eEEEecccCCccccCC-CceeEEEEccccccccch
Q psy11730        343 CKFYHGDWGSLSAVIH-SKFDIILTSETIYSVANY  376 (496)
Q Consensus       343 v~~~~~d~~~~~~~~~-~~fD~Ii~~~~l~~~~~~  376 (496)
                      ++++++|+.++..... .+||+|+||++++-....
T Consensus        97 i~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~  131 (248)
T COG4123          97 IQVIEADIKEFLKALVFASFDLIICNPPYFKQGSR  131 (248)
T ss_pred             eeEehhhHHHhhhcccccccCEEEeCCCCCCCccc
Confidence            9999999998876544 469999999999887443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.10  E-value=3e-10  Score=109.42  Aligned_cols=97  Identities=21%  Similarity=0.258  Sum_probs=79.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ++.+|||+|||+|.++..+++. +. .+|+|+|+|+.|++.++++....   ...+++++.+|.++++.. .++||+|++
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~V~~  120 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA---GLHNVELVHGNAMELPFD-DNSFDYVTI  120 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc---CCCceEEEEechhcCCCC-CCCccEEEE
Confidence            4789999999999999998876 33 68999999999999988765332   246899999999887643 579999999


Q ss_pred             ccccccccchHhHhhee--eecCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ..++++++++..++++.  .|.|++
T Consensus       121 ~~~l~~~~~~~~~l~~~~~~Lk~gG  145 (231)
T TIGR02752       121 GFGLRNVPDYMQVLREMYRVVKPGG  145 (231)
T ss_pred             ecccccCCCHHHHHHHHHHHcCcCe
Confidence            99999999999888763  555655

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.09  E-value=2.2e-10  Score=106.23  Aligned_cols=95  Identities=19%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      +++.+|||||||+|.+++.++..++ .+|+|+|.|+.|++.++++....   ...+++++.+|++++..  .++||+|++
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~---~~~~i~~i~~d~~~~~~--~~~fD~I~s  115 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL---GLNNVEIVNGRAEDFQH--EEQFDVITS  115 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh---CCCCeEEEecchhhccc--cCCccEEEe
Confidence            4588999999999999999887765 68999999999999887654332   24579999999988642  579999999


Q ss_pred             ccccccccchHhHhheeeecCCC
Q psy11730        367 SETIYSVANYNKLLTVWCLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~~l~p~~  389 (496)
                      +. ++++++.-..+. ..|.|+|
T Consensus       116 ~~-~~~~~~~~~~~~-~~LkpgG  136 (181)
T TIGR00138       116 RA-LASLNVLLELTL-NLLKVGG  136 (181)
T ss_pred             hh-hhCHHHHHHHHH-HhcCCCC
Confidence            76 444433322221 1355655

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.09  E-value=1.2e-10  Score=107.01  Aligned_cols=93  Identities=17%  Similarity=0.216  Sum_probs=80.5

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ....+|.|||||+|..+..|+++.+ ..|+|||-|++|++.|+.+        ..+++|..+|+.+...  ...+|+|++
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~p--~~~~dllfa   98 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWKP--EQPTDLLFA   98 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcCC--CCccchhhh
Confidence            3477999999999999999999877 8999999999999999765        5788999999887654  568999999


Q ss_pred             ccccccccchHhHhhee--eecCCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      |-+++++++...++..+  .|-|++.
T Consensus        99 NAvlqWlpdH~~ll~rL~~~L~Pgg~  124 (257)
T COG4106          99 NAVLQWLPDHPELLPRLVSQLAPGGV  124 (257)
T ss_pred             hhhhhhccccHHHHHHHHHhhCCCce
Confidence            99999999999999874  5666653

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.07  E-value=3.8e-10  Score=106.68  Aligned_cols=84  Identities=15%  Similarity=0.132  Sum_probs=67.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.++..+++. +..+++|+|+|++|++.|+++.        .++.+..+|+.+ +. .+++||+|+++
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~-~~~sfD~V~~~  112 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PF-KDNFFDLVLTK  112 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CC-CCCCEEEEEEC
Confidence            5678999999999999999876 4578999999999999998643        356778888877 33 36899999999


Q ss_pred             ccccccc--chHhHhhe
Q psy11730        368 ETIYSVA--NYNKLLTV  382 (496)
Q Consensus       368 ~~l~~~~--~~~~~~~~  382 (496)
                      .+++|++  +...++++
T Consensus       113 ~vL~hl~p~~~~~~l~e  129 (204)
T TIGR03587       113 GVLIHINPDNLPTAYRE  129 (204)
T ss_pred             ChhhhCCHHHHHHHHHH
Confidence            9999984  23444443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.07  E-value=3.4e-10  Score=106.32  Aligned_cols=95  Identities=21%  Similarity=0.249  Sum_probs=72.2

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||+|||+|.++..+++.| .+|+|+|+|+.|++.++++....+   . ++.+...|+...+.  .++||+|+++.
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~---~-~v~~~~~d~~~~~~--~~~fD~I~~~~  102 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKAREN---L-PLRTDAYDINAAAL--NEDYDFIFSTV  102 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhC---C-CceeEeccchhccc--cCCCCEEEEec
Confidence            56799999999999999999886 489999999999999876553322   1 36677777765443  46899999999


Q ss_pred             cccccc--chHhHhhee--eecCCCC
Q psy11730        369 TIYSVA--NYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       369 ~l~~~~--~~~~~~~~~--~l~p~~~  390 (496)
                      ++++++  +...+++.+  .|.|+|.
T Consensus       103 ~~~~~~~~~~~~~l~~~~~~LkpgG~  128 (195)
T TIGR00477       103 VFMFLQAGRVPEIIANMQAHTRPGGY  128 (195)
T ss_pred             ccccCCHHHHHHHHHHHHHHhCCCcE
Confidence            999884  455666652  5666653

Part of a tellurite-reducing operon tehA and tehB

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.05  E-value=4.3e-10  Score=101.48  Aligned_cols=87  Identities=23%  Similarity=0.295  Sum_probs=67.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++++|||||||+|.++..++..+. +|+|+|+|+.+++. .            ++.+...+...... ..++||+|+|+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-~------------~~~~~~~~~~~~~~-~~~~fD~i~~~   85 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-R------------NVVFDNFDAQDPPF-PDGSFDLIICN   85 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-T------------TSEEEEEECHTHHC-HSSSEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-h------------hhhhhhhhhhhhhc-cccchhhHhhH
Confidence            4688999999999999999988877 89999999999987 1            11112222222222 26899999999


Q ss_pred             cccccccchHhHhhee--eecCCC
Q psy11730        368 ETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      .+++|++++..+++.+  .+.|+|
T Consensus        86 ~~l~~~~d~~~~l~~l~~~LkpgG  109 (161)
T PF13489_consen   86 DVLEHLPDPEEFLKELSRLLKPGG  109 (161)
T ss_dssp             SSGGGSSHHHHHHHHHHHCEEEEE
T ss_pred             HHHhhcccHHHHHHHHHHhcCCCC
Confidence            9999999999999874  666664

...

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.05  E-value=4.4e-10  Score=109.58  Aligned_cols=112  Identities=15%  Similarity=0.179  Sum_probs=81.7

Q ss_pred             chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHc---cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMN---GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~---~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .-..++..+......++.+|||||||+|.++..+++.   ...+|+|+|+|+.|++.|+++....+  ...+++++.+|+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~  118 (247)
T PRK15451         41 NIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDI  118 (247)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCCh
Confidence            3333444444433346789999999999999988773   33799999999999999988764322  245799999999


Q ss_pred             CCccccCCCceeEEEEccccccccch--HhHhhee--eecCCCC
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVANY--NKLLTVW--CLFPTHT  390 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~~--~l~p~~~  390 (496)
                      .+++.   ..+|+|+++.+++|+++.  ..+++++  .|.|+|.
T Consensus       119 ~~~~~---~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~  159 (247)
T PRK15451        119 RDIAI---ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGA  159 (247)
T ss_pred             hhCCC---CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCE
Confidence            88763   459999999999998643  4566653  5666653

>KOG1540|consensus

Probab=99.04  E-value=8.3e-10  Score=104.05  Aligned_cols=127  Identities=20%  Similarity=0.220  Sum_probs=100.1

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccC-------CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGA-------AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS  359 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~-------~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  359 (496)
                      +..+.+|||++||||.++..+...-.       .+|+.+|+|++|++.+++++.+........+.++.+|+++++++ +.
T Consensus        98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd-d~  176 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD-DD  176 (296)
T ss_pred             CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC-CC
Confidence            34578999999999999999876322       68999999999999999998765545556699999999999965 79


Q ss_pred             ceeEEEEccccccccchHhHhhe--eeecCCCCCcccEEEeeccCCcc-cccccchhhHhcCCCC
Q psy11730        360 KFDIILTSETIYSVANYNKLLTV--WCLFPTHTPKDLLKVTSAEGGKQ-RDEAITWFSIIYPRTQ  421 (496)
Q Consensus       360 ~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  421 (496)
                      +||..++..-|....++++.+++  +.|.|++.    ....   .+.. ....+.||.+.|....
T Consensus       177 s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGr----f~cL---eFskv~~~~l~~fy~~ysf~V  234 (296)
T KOG1540|consen  177 SFDAYTIAFGIRNVTHIQKALREAYRVLKPGGR----FSCL---EFSKVENEPLKWFYDQYSFDV  234 (296)
T ss_pred             cceeEEEecceecCCCHHHHHHHHHHhcCCCcE----EEEE---EccccccHHHHHHHHhhhhhh
Confidence            99999999999999999999988  57888773    2222   1222 2356777777666543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.04  E-value=7.3e-10  Score=113.49  Aligned_cols=99  Identities=22%  Similarity=0.323  Sum_probs=72.8

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      +.+|||||||+|.+++.+++.++ .+|+++|.|+.|++.++++...++.....++++...|..+...  ..+||+|+|++
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--~~~fDlIlsNP  306 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--PFRFNAVLCNP  306 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--CCCEEEEEECc
Confidence            46999999999999999998876 6999999999999999876543332223578999888754321  45899999999


Q ss_pred             cccccc-----chHhHhhe--eeecCCCC
Q psy11730        369 TIYSVA-----NYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       369 ~l~~~~-----~~~~~~~~--~~l~p~~~  390 (496)
                      ++|...     ....+++.  ..|.|+|.
T Consensus       307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~  335 (378)
T PRK15001        307 PFHQQHALTDNVAWEMFHHARRCLKINGE  335 (378)
T ss_pred             CcccCccCCHHHHHHHHHHHHHhcccCCE
Confidence            997652     12344433  25666653

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.03  E-value=6.3e-10  Score=103.52  Aligned_cols=92  Identities=26%  Similarity=0.338  Sum_probs=71.9

Q ss_pred             CCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      +.+|||||||+|..++.++... ..+|+|+|.|++|++.++++....+   ..+++++++|++++..  .++||+|+++.
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~---l~~i~~~~~d~~~~~~--~~~fDlV~~~~  120 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG---LKNVTVVHGRAEEFGQ--EEKFDVVTSRA  120 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC---CCCEEEEeccHhhCCC--CCCccEEEEcc
Confidence            7899999999999999988744 4799999999999999987664433   3459999999988765  57899999975


Q ss_pred             ccccccchHhHhhe--eeecCCCC
Q psy11730        369 TIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       369 ~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                          +.+++.+++.  ..+.|++.
T Consensus       121 ----~~~~~~~l~~~~~~LkpGG~  140 (187)
T PRK00107        121 ----VASLSDLVELCLPLLKPGGR  140 (187)
T ss_pred             ----ccCHHHHHHHHHHhcCCCeE
Confidence                3455666654  25666653

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.02  E-value=9.2e-10  Score=103.31  Aligned_cols=84  Identities=23%  Similarity=0.276  Sum_probs=69.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC-ccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS-LSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.++..++..+...++|+|+|++|++.++.+          +++++.+|+.+ +....+++||+|+++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~~~~sfD~Vi~~   82 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEAFPDKSFDYVILS   82 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence            5679999999999999998877667789999999999987642          35778888865 322335789999999


Q ss_pred             cccccccchHhHhhe
Q psy11730        368 ETIYSVANYNKLLTV  382 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~  382 (496)
                      .+++|+.++..++++
T Consensus        83 ~~l~~~~d~~~~l~e   97 (194)
T TIGR02081        83 QTLQATRNPEEILDE   97 (194)
T ss_pred             hHhHcCcCHHHHHHH
Confidence            999999999998876

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.01  E-value=1.4e-09  Score=109.90  Aligned_cols=95  Identities=21%  Similarity=0.219  Sum_probs=79.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .+.+|||||||+|.+++.+++.. ..+|+++|+|++|++.++++..      ..+++++.+|+++++.. .++||+|+++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~-~~sFDvVIs~  185 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDLPFP-TDYADRYVSA  185 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhCCCC-CCceeEEEEc
Confidence            46799999999999999987753 4789999999999999887541      34688999999887654 5789999999


Q ss_pred             cccccccchHhHhhee--eecCCCC
Q psy11730        368 ETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      .+++++++.+.++++.  .|.|++.
T Consensus       186 ~~L~~~~d~~~~L~e~~rvLkPGG~  210 (340)
T PLN02490        186 GSIEYWPDPQRGIKEAYRVLKIGGK  210 (340)
T ss_pred             ChhhhCCCHHHHHHHHHHhcCCCcE
Confidence            9999999999888873  6777664

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=8.4e-10  Score=109.20  Aligned_cols=97  Identities=16%  Similarity=0.127  Sum_probs=75.5

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .+++..|++.+.......+.+|||||||||.+++.++...+ ..|+|+|+|+.+++.|++++..++.   .++.++.+|+
T Consensus        93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dl  169 (280)
T COG2890          93 RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDL  169 (280)
T ss_pred             CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeec
Confidence            77888888876533322223899999999999999999888 5999999999999999987765542   5667777776


Q ss_pred             CCccccCCCceeEEEEcccccccc
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      .+..   .++||+|+||+|+-..+
T Consensus       170 f~~~---~~~fDlIVsNPPYip~~  190 (280)
T COG2890         170 FEPL---RGKFDLIVSNPPYIPAE  190 (280)
T ss_pred             cccc---CCceeEEEeCCCCCCCc
Confidence            6543   45999999999975554

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.00  E-value=7e-10  Score=110.59  Aligned_cols=95  Identities=26%  Similarity=0.312  Sum_probs=74.7

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      +++++|||||||+|.+++.+++.| .+|+|+|+|+.|++.++++....+   . ++++...|+.....  .++||+|++.
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~---l-~v~~~~~D~~~~~~--~~~fD~I~~~  191 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKEN---L-NIRTGLYDINSASI--QEEYDFILST  191 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcC---C-ceEEEEechhcccc--cCCccEEEEc
Confidence            356799999999999999999887 589999999999999886653322   2 68888888876544  6789999999


Q ss_pred             ccccccc--chHhHhhee--eecCCC
Q psy11730        368 ETIYSVA--NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~--~~~~~~~~~--~l~p~~  389 (496)
                      .++++++  +...+++..  .+.|+|
T Consensus       192 ~vl~~l~~~~~~~~l~~~~~~LkpgG  217 (287)
T PRK12335        192 VVLMFLNRERIPAIIKNMQEHTNPGG  217 (287)
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCc
Confidence            9999884  555666652  566655

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.00  E-value=1.8e-09  Score=99.96  Aligned_cols=93  Identities=22%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      .+++..|...+..   .++++|||+|||+|.++..++..+. +|+|+|+|++|++.++++....+    .+++++.+|+.
T Consensus         5 ~~d~~~l~~~l~~---~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~   76 (179)
T TIGR00537         5 AEDSLLLEANLRE---LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLF   76 (179)
T ss_pred             CccHHHHHHHHHh---cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC----CceEEEEcccc
Confidence            3455556665543   3567899999999999999998887 89999999999999887653222    25788889976


Q ss_pred             CccccCCCceeEEEEccccccccc
Q psy11730        352 SLSAVIHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~~~  375 (496)
                      +..   .++||+|++++++++.++
T Consensus        77 ~~~---~~~fD~Vi~n~p~~~~~~   97 (179)
T TIGR00537        77 KGV---RGKFDVILFNPPYLPLED   97 (179)
T ss_pred             ccc---CCcccEEEECCCCCCCcc
Confidence            643   468999999999887753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK06202 hypothetical protein; Provisional

Probab=98.99  E-value=9.1e-10  Score=106.31  Aligned_cols=87  Identities=21%  Similarity=0.294  Sum_probs=67.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc----cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN----GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDI  363 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~----~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~  363 (496)
                      ++.+|||||||+|.++..+++.    |. .+|+|+|+|++|++.|+++..      ..++.+...+.+.++.. +++||+
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~------~~~~~~~~~~~~~l~~~-~~~fD~  132 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR------RPGVTFRQAVSDELVAE-GERFDV  132 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc------cCCCeEEEEeccccccc-CCCccE
Confidence            5679999999999999988753    43 589999999999999887642      23466666666665542 679999


Q ss_pred             EEEccccccccchH--hHhhe
Q psy11730        364 ILTSETIYSVANYN--KLLTV  382 (496)
Q Consensus       364 Ii~~~~l~~~~~~~--~~~~~  382 (496)
                      |+++.++||+++.+  .++++
T Consensus       133 V~~~~~lhh~~d~~~~~~l~~  153 (232)
T PRK06202        133 VTSNHFLHHLDDAEVVRLLAD  153 (232)
T ss_pred             EEECCeeecCChHHHHHHHHH
Confidence            99999999998753  45554

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.99  E-value=7.4e-10  Score=106.19  Aligned_cols=96  Identities=16%  Similarity=0.096  Sum_probs=78.1

Q ss_pred             CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccc
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSET  369 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~  369 (496)
                      ++|||||||+|.++..+++.++ .+|+|+|+|+++++.++.+....  +...+++++..|+.+.+.  .++||+|++..+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--gl~~~i~~~~~d~~~~~~--~~~fD~I~~~~~   76 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--GLQGRIRIFYRDSAKDPF--PDTYDLVFGFEV   76 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--CCCcceEEEecccccCCC--CCCCCEeehHHH
Confidence            4799999999999999988764 68999999999999988765332  234578999999866543  468999999999


Q ss_pred             cccccchHhHhhee--eecCCCC
Q psy11730        370 IYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       370 l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      ++|+.+...+++..  .|.|+|.
T Consensus        77 l~~~~~~~~~l~~~~~~LkpgG~   99 (224)
T smart00828       77 IHHIKDKMDLFSNISRHLKDGGH   99 (224)
T ss_pred             HHhCCCHHHHHHHHHHHcCCCCE
Confidence            99999999888773  6677653

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.99  E-value=1.1e-09  Score=108.31  Aligned_cols=98  Identities=18%  Similarity=0.257  Sum_probs=79.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ++.+|||||||+|..++.+++. +. .+|+|+|+|+.|++.|+++....   ...++++..+|+++++.. ++.||+|++
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~---g~~~v~~~~~d~~~l~~~-~~~fD~Vi~  152 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA---GYTNVEFRLGEIEALPVA-DNSVDVIIS  152 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc---CCCCEEEEEcchhhCCCC-CCceeEEEE
Confidence            5789999999999998877664 44 47999999999999998764332   235889999999887753 578999999


Q ss_pred             ccccccccchHhHhhee--eecCCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +.++++.++...++++.  .|.|++.
T Consensus       153 ~~v~~~~~d~~~~l~~~~r~LkpGG~  178 (272)
T PRK11873        153 NCVINLSPDKERVFKEAFRVLKPGGR  178 (272)
T ss_pred             cCcccCCCCHHHHHHHHHHHcCCCcE
Confidence            99999999988888762  5666653

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.99  E-value=1.6e-09  Score=108.77  Aligned_cols=94  Identities=21%  Similarity=0.295  Sum_probs=71.8

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccccc--CCCCceEEEecccCCccc
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT--DNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~v~~~~~d~~~~~~  355 (496)
                      +++++......++.+|||||||+|.+++.+++.| .+|+|+|+|+.|++.++++......  ....++.|..+|++++  
T Consensus       133 ~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--  209 (315)
T PLN02585        133 VLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--  209 (315)
T ss_pred             HHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--
Confidence            3444443324567899999999999999999886 5899999999999999877533210  1234678888887654  


Q ss_pred             cCCCceeEEEEccccccccch
Q psy11730        356 VIHSKFDIILTSETIYSVANY  376 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~  376 (496)
                        ++.||+|+|..+++|+++.
T Consensus       210 --~~~fD~Vv~~~vL~H~p~~  228 (315)
T PLN02585        210 --SGKYDTVTCLDVLIHYPQD  228 (315)
T ss_pred             --CCCcCEEEEcCEEEecCHH
Confidence              5789999999999998653

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.97  E-value=1.7e-09  Score=111.78  Aligned_cols=102  Identities=25%  Similarity=0.323  Sum_probs=78.1

Q ss_pred             HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      ..+.+.+...+ ++.+|||||||+|.++..+++....+|+|+|+|++|++.++++..      ..++++...|+.++   
T Consensus       155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~------~l~v~~~~~D~~~l---  225 (383)
T PRK11705        155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA------GLPVEIRLQDYRDL---  225 (383)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc------cCeEEEEECchhhc---
Confidence            34445444443 578999999999999999988766789999999999999987652      12477888887654   


Q ss_pred             CCCceeEEEEcccccccc--chHhHhhe--eeecCCC
Q psy11730        357 IHSKFDIILTSETIYSVA--NYNKLLTV--WCLFPTH  389 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~--~~~~~~~~--~~l~p~~  389 (496)
                       .++||+|++..+++|+.  +++.+++.  ..|.|+|
T Consensus       226 -~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG  261 (383)
T PRK11705        226 -NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDG  261 (383)
T ss_pred             -CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCc
Confidence             46899999999999984  45667765  2666765

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=9.9e-10  Score=107.90  Aligned_cols=93  Identities=22%  Similarity=0.230  Sum_probs=69.1

Q ss_pred             eecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        271 IWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       271 ~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      +++.....+++|.+... ++++|||+|||||.+++.+++.|++.|+|+|+.+.+++.++.+...++...  .++....+.
T Consensus       145 ~HpTT~lcL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~--~~~~~~~~~  221 (300)
T COG2264         145 THPTTSLCLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL--LVQAKGFLL  221 (300)
T ss_pred             CChhHHHHHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch--hhhcccccc
Confidence            47777788888877654 899999999999999999999999999999999999999988664443211  111222222


Q ss_pred             CCccccCCCceeEEEEcc
Q psy11730        351 GSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~  368 (496)
                      ...+.  .+.||+|++|-
T Consensus       222 ~~~~~--~~~~DvIVANI  237 (300)
T COG2264         222 LEVPE--NGPFDVIVANI  237 (300)
T ss_pred             hhhcc--cCcccEEEehh
Confidence            22221  36999999975

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.96  E-value=1.5e-09  Score=100.57  Aligned_cols=96  Identities=18%  Similarity=0.227  Sum_probs=68.7

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .+++.++||||||.|..+++||++|. .|+++|.|+..++.+++.+...+    -+++....|+++...  .+.||+|++
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~--~~~yD~I~s  100 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDF--PEEYDFIVS  100 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS---TTTEEEEEE
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhccc--cCCcCEEEE
Confidence            35688999999999999999999998 59999999999998765443322    248888899888765  578999999


Q ss_pred             cccccccc--chHhHhhee--eecCCC
Q psy11730        367 SETIYSVA--NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~--~~~~~~~~~--~l~p~~  389 (496)
                      ..+++|+.  ..+.+++..  .+.|+|
T Consensus       101 t~v~~fL~~~~~~~i~~~m~~~~~pGG  127 (192)
T PF03848_consen  101 TVVFMFLQRELRPQIIENMKAATKPGG  127 (192)
T ss_dssp             ESSGGGS-GGGHHHHHHHHHHTEEEEE
T ss_pred             EEEeccCCHHHHHHHHHHHHhhcCCcE
Confidence            88888884  334455432  345544

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK08317 hypothetical protein; Provisional

Probab=98.95  E-value=3.5e-09  Score=101.92  Aligned_cols=108  Identities=19%  Similarity=0.165  Sum_probs=84.0

Q ss_pred             HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHcc-C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNG-A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      +.+.+.....+ ++.+|||+|||+|.++..++... + .+|+|+|+|+.+++.++++..    ....++.+...|+.+.+
T Consensus         7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~----~~~~~~~~~~~d~~~~~   82 (241)
T PRK08317          7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA----GLGPNVEFVRGDADGLP   82 (241)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh----CCCCceEEEecccccCC
Confidence            33444444443 47899999999999999998865 3 689999999999998876521    12457899999988766


Q ss_pred             ccCCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        355 AVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      .. .+.||+|++..+++|+.++..+++..  .|.|+|.
T Consensus        83 ~~-~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~  119 (241)
T PRK08317         83 FP-DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGR  119 (241)
T ss_pred             CC-CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcE
Confidence            43 57899999999999999999988873  5666653

>TIGR00740 methyltransferase, putative

Probab=98.95  E-value=2.1e-09  Score=104.32  Aligned_cols=103  Identities=17%  Similarity=0.148  Sum_probs=77.5

Q ss_pred             HHhCCCCCCCeEEEecCcCCHHHHHHHHcc---CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730        282 IKDNVAVDKLSVLDVGCGAGLLGLYTLMNG---AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH  358 (496)
Q Consensus       282 l~~~~~~~~~~VLDlGcGtG~~~~~la~~~---~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  358 (496)
                      +.+....++.+|||||||+|.++..+++..   ..+|+|+|+|+.|++.|+++....  ....+++++++|+.+++.   
T Consensus        46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~--~~~~~v~~~~~d~~~~~~---  120 (239)
T TIGR00740        46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVEI---  120 (239)
T ss_pred             HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECChhhCCC---
Confidence            433333467799999999999999988753   368999999999999998764321  224578999999988764   


Q ss_pred             CceeEEEEccccccccc--hHhHhhee--eecCCC
Q psy11730        359 SKFDIILTSETIYSVAN--YNKLLTVW--CLFPTH  389 (496)
Q Consensus       359 ~~fD~Ii~~~~l~~~~~--~~~~~~~~--~l~p~~  389 (496)
                      ..+|+|+++.+++|+++  ...+++.+  .|.|++
T Consensus       121 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG  155 (239)
T TIGR00740       121 KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNG  155 (239)
T ss_pred             CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCe
Confidence            35899999999999854  45566653  566665

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK14967 putative methyltransferase; Provisional

Probab=98.95  E-value=2.5e-09  Score=102.66  Aligned_cols=101  Identities=23%  Similarity=0.323  Sum_probs=76.4

Q ss_pred             CceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEE
Q psy11730        267 GGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY  346 (496)
Q Consensus       267 ~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~  346 (496)
                      +.|..-.++..+++.+......++.+|||+|||+|.+++.+++.+..+|+|+|+|+.+++.++++....+    .++.++
T Consensus        14 g~~~p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~   89 (223)
T PRK14967         14 GVYRPQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG----VDVDVR   89 (223)
T ss_pred             CCcCCCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC----CeeEEE
Confidence            3344455667777777665444578999999999999999988876799999999999998876543222    257888


Q ss_pred             ecccCCccccCCCceeEEEEccccccc
Q psy11730        347 HGDWGSLSAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       347 ~~d~~~~~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .+|+.+...  .++||+|++++++...
T Consensus        90 ~~d~~~~~~--~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         90 RGDWARAVE--FRPFDVVVSNPPYVPA  114 (223)
T ss_pred             ECchhhhcc--CCCeeEEEECCCCCCC
Confidence            888876422  5789999999876543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.93  E-value=1.6e-09  Score=107.31  Aligned_cols=95  Identities=22%  Similarity=0.254  Sum_probs=69.5

Q ss_pred             eecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        271 IWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       271 ~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .++.....+++|.+. ..++++|||+|||||.+++.+++.|+++|+|+|+++.+++.|+.+...++.  ..++.+.  ..
T Consensus       144 ~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~--~~~~~v~--~~  218 (295)
T PF06325_consen  144 HHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGV--EDRIEVS--LS  218 (295)
T ss_dssp             HCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT---TTCEEES--CT
T ss_pred             CCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCC--CeeEEEE--Ee
Confidence            477778888888776 446889999999999999999999999999999999999999887655442  2244432  22


Q ss_pred             CCccccCCCceeEEEEccccccc
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .+..   ...||+|++|-...-+
T Consensus       219 ~~~~---~~~~dlvvANI~~~vL  238 (295)
T PF06325_consen  219 EDLV---EGKFDLVVANILADVL  238 (295)
T ss_dssp             SCTC---CS-EEEEEEES-HHHH
T ss_pred             cccc---cccCCEEEECCCHHHH
Confidence            2222   4899999997654444

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.92  E-value=3.1e-09  Score=101.60  Aligned_cols=88  Identities=25%  Similarity=0.338  Sum_probs=69.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.++..++..+ .+|+|+|+|++|++.|+++....+  ...++.|..+|+.+++    ++||+|++.
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~fD~ii~~  126 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSLC----GEFDIVVCM  126 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhCC----CCcCEEEEh
Confidence            457899999999999999998775 489999999999999987653322  1247899999988764    789999999


Q ss_pred             cccccccc--hHhHhhe
Q psy11730        368 ETIYSVAN--YNKLLTV  382 (496)
Q Consensus       368 ~~l~~~~~--~~~~~~~  382 (496)
                      .+++|++.  ...++..
T Consensus       127 ~~l~~~~~~~~~~~l~~  143 (219)
T TIGR02021       127 DVLIHYPASDMAKALGH  143 (219)
T ss_pred             hHHHhCCHHHHHHHHHH
Confidence            99988743  4445543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.90  E-value=4.3e-09  Score=101.20  Aligned_cols=98  Identities=22%  Similarity=0.369  Sum_probs=72.5

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      +..++......++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+  ...++.+..+|++..    
T Consensus        52 ~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~----  124 (230)
T PRK07580         52 VLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLESL----  124 (230)
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCchhc----
Confidence            34444443334678999999999999999998875 59999999999999987653322  225788999885432    


Q ss_pred             CCceeEEEEccccccccc--hHhHhhe
Q psy11730        358 HSKFDIILTSETIYSVAN--YNKLLTV  382 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~--~~~~~~~  382 (496)
                      .++||+|++..+++|+++  ...+++.
T Consensus       125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~  151 (230)
T PRK07580        125 LGRFDTVVCLDVLIHYPQEDAARMLAH  151 (230)
T ss_pred             cCCcCEEEEcchhhcCCHHHHHHHHHH
Confidence            578999999999988753  3445543

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.90  E-value=4.5e-09  Score=108.00  Aligned_cols=97  Identities=20%  Similarity=0.305  Sum_probs=74.3

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      -+....+++.+.+... ++.+|||||||+|.+++.++... ..+|+|+|+|+.|++.|+++....+    .+++++++|+
T Consensus       235 RpeTE~LVe~aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl  309 (423)
T PRK14966        235 RPETEHLVEAVLARLP-ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSW  309 (423)
T ss_pred             CccHHHHHHHhhhccC-CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcch
Confidence            4566677777766543 45699999999999999988764 4789999999999999987754322    3799999998


Q ss_pred             CCccccCCCceeEEEEccccccc
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .+......++||+|+|++|+...
T Consensus       310 ~e~~l~~~~~FDLIVSNPPYI~~  332 (423)
T PRK14966        310 FDTDMPSEGKWDIIVSNPPYIEN  332 (423)
T ss_pred             hccccccCCCccEEEECCCCCCc
Confidence            65432224579999999986543

>KOG1500|consensus

Probab=98.90  E-value=6.4e-10  Score=108.02  Aligned_cols=125  Identities=18%  Similarity=0.301  Sum_probs=99.0

Q ss_pred             cchhcccCCccccceeecccccCCCccccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEE
Q psy11730        238 NIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSF  317 (496)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~g  317 (496)
                      ++..+-..||-.++.......|+.+-++++.|.        ...+.+..+++++.|||+|||+|+++.+.++.|+++|++
T Consensus       134 tEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~--------~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYA  205 (517)
T KOG1500|consen  134 TEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQ--------RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYA  205 (517)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEE
Confidence            444445567777777777788888888777554        445556668999999999999999999999999999999


Q ss_pred             EeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccccc
Q psy11730        318 QDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       318 iD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~  375 (496)
                      |+.| +|.+.|++-..-+  ....+|+++.+-++++..  .++.|+||+.++-+.+-|
T Consensus       206 vEAS-~MAqyA~~Lv~~N--~~~~rItVI~GKiEdieL--PEk~DviISEPMG~mL~N  258 (517)
T KOG1500|consen  206 VEAS-EMAQYARKLVASN--NLADRITVIPGKIEDIEL--PEKVDVIISEPMGYMLVN  258 (517)
T ss_pred             Eehh-HHHHHHHHHHhcC--CccceEEEccCccccccC--chhccEEEeccchhhhhh
Confidence            9987 4667766543222  357899999999999887  689999999988887744

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.89  E-value=5.6e-09  Score=98.03  Aligned_cols=81  Identities=17%  Similarity=0.198  Sum_probs=64.6

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ..+.+|||+|||+|.+++.++..++.+|+++|.++.+++.++++....+   ..+++++.+|+.+........||+|+++
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~---~~~v~~~~~D~~~~l~~~~~~fDlV~~D  128 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLK---AGNARVVNTNALSFLAQPGTPHNVVFVD  128 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEEchHHHHHhhcCCCceEEEEC
Confidence            3578999999999999998777788899999999999998886543332   3479999999876432224579999999


Q ss_pred             cccc
Q psy11730        368 ETIY  371 (496)
Q Consensus       368 ~~l~  371 (496)
                      +++.
T Consensus       129 PPy~  132 (199)
T PRK10909        129 PPFR  132 (199)
T ss_pred             CCCC
Confidence            9953

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.89  E-value=9.3e-09  Score=97.38  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=75.4

Q ss_pred             HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      +...+.+...+ ++.+|||||||+|..+..+++..  ..+|+++|+++++++.++++....+  ...++++..+|..+..
T Consensus        60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~  137 (205)
T PRK13944         60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGL  137 (205)
T ss_pred             HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCC
Confidence            34444444433 46899999999999999988754  3689999999999999886553322  2346899999987654


Q ss_pred             ccCCCceeEEEEccccccccchHhHhheeeecCCC
Q psy11730        355 AVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTH  389 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~  389 (496)
                      .. ..+||+|++..++.+++  +.+++  .|.|+|
T Consensus       138 ~~-~~~fD~Ii~~~~~~~~~--~~l~~--~L~~gG  167 (205)
T PRK13944        138 EK-HAPFDAIIVTAAASTIP--SALVR--QLKDGG  167 (205)
T ss_pred             cc-CCCccEEEEccCcchhh--HHHHH--hcCcCc
Confidence            32 57899999999988775  23443  345554

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.88  E-value=3.1e-09  Score=90.89  Aligned_cols=82  Identities=29%  Similarity=0.318  Sum_probs=65.8

Q ss_pred             CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii~~~  368 (496)
                      |.+|||+|||+|.+++.+++.+..+++|+|+++..++.++.+.....  ...+++++++|+.+... ...++||+|++++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np   78 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVTNP   78 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEECC
Confidence            46899999999999999999887899999999999999887654432  34679999999988762 2368999999999


Q ss_pred             ccccc
Q psy11730        369 TIYSV  373 (496)
Q Consensus       369 ~l~~~  373 (496)
                      ++...
T Consensus        79 P~~~~   83 (117)
T PF13659_consen   79 PYGPR   83 (117)
T ss_dssp             STTSB
T ss_pred             CCccc
Confidence            98754

...

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.87  E-value=7.1e-09  Score=95.09  Aligned_cols=86  Identities=17%  Similarity=0.119  Sum_probs=68.3

Q ss_pred             HHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730        280 NFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH  358 (496)
Q Consensus       280 ~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  358 (496)
                      +.+.+...+ .+.+|||||||+|.++..+++. ..+|+|+|+++.|++.++++..     ...+++++++|+.+++.. .
T Consensus         3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~-----~~~~v~ii~~D~~~~~~~-~   75 (169)
T smart00650        3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFA-----AADNLTVIHGDALKFDLP-K   75 (169)
T ss_pred             HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhc-----cCCCEEEEECchhcCCcc-c
Confidence            334444443 4679999999999999999988 5789999999999999876542     135899999999988653 3


Q ss_pred             CceeEEEEcccccc
Q psy11730        359 SKFDIILTSETIYS  372 (496)
Q Consensus       359 ~~fD~Ii~~~~l~~  372 (496)
                      ..||+|+++.+++-
T Consensus        76 ~~~d~vi~n~Py~~   89 (169)
T smart00650       76 LQPYKVVGNLPYNI   89 (169)
T ss_pred             cCCCEEEECCCccc
Confidence            56999999988764

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.87  E-value=1.1e-08  Score=101.92  Aligned_cols=109  Identities=24%  Similarity=0.259  Sum_probs=74.3

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      ++.....++++... ..++++|||+|||+|.+++.+++.|..+|+|+|+++.|++.|+++...++  ...++.+...+..
T Consensus       143 h~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~--~~~~~~~~~~~~~  219 (288)
T TIGR00406       143 HPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQ--VSDRLQVKLIYLE  219 (288)
T ss_pred             CHHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC--CCcceEEEecccc
Confidence            45555555555543 34678999999999999999988888899999999999999987654332  2234555655532


Q ss_pred             CccccCCCceeEEEEccccccccchHhHhhe--eeecCCC
Q psy11730        352 SLSAVIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      ..   ..++||+|+++.....+   ..++..  ..+.|++
T Consensus       220 ~~---~~~~fDlVvan~~~~~l---~~ll~~~~~~LkpgG  253 (288)
T TIGR00406       220 QP---IEGKADVIVANILAEVI---KELYPQFSRLVKPGG  253 (288)
T ss_pred             cc---cCCCceEEEEecCHHHH---HHHHHHHHHHcCCCc
Confidence            22   25689999998765433   233333  2455654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG4300|consensus

Probab=98.86  E-value=3.8e-09  Score=96.59  Aligned_cols=97  Identities=22%  Similarity=0.224  Sum_probs=81.8

Q ss_pred             CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceE-EEecccCCccccCCCceeEEEEccc
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCK-FYHGDWGSLSAVIHSKFDIILTSET  369 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~fD~Ii~~~~  369 (496)
                      ..|||||||||..-.+.--.....||++|.|+.|-+++.+++.+.   ...++. |+.++.++++...++++|+|++..+
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv  154 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQLADGSYDTVVCTLV  154 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence            368999999999987755555578999999999999998887554   355666 9999999998666899999999999


Q ss_pred             cccccchHhHhhe--eeecCCCC
Q psy11730        370 IYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       370 l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      +....++.+.+++  .+|.|+|.
T Consensus       155 LCSve~~~k~L~e~~rlLRpgG~  177 (252)
T KOG4300|consen  155 LCSVEDPVKQLNEVRRLLRPGGR  177 (252)
T ss_pred             EeccCCHHHHHHHHHHhcCCCcE
Confidence            9999999999987  37777764

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.85  E-value=1.2e-08  Score=96.94  Aligned_cols=114  Identities=15%  Similarity=0.095  Sum_probs=78.6

Q ss_pred             hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccc---------ccCCCCceEE
Q psy11730        275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILM---------NTDNLEKCKF  345 (496)
Q Consensus       275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~---------~~~~~~~v~~  345 (496)
                      ...|.+++......++.+|||+|||.|..+++||++|. .|+|+|+|+.+++.+.+.+...         +.....++++
T Consensus        20 ~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   98 (213)
T TIGR03840        20 NPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEI   98 (213)
T ss_pred             CHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEE
Confidence            34555655543223578999999999999999999876 6999999999999853322110         0012357999


Q ss_pred             EecccCCccccCCCceeEEEEccccccccch--HhHhhe--eeecCCC
Q psy11730        346 YHGDWGSLSAVIHSKFDIILTSETIYSVANY--NKLLTV--WCLFPTH  389 (496)
Q Consensus       346 ~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~--~~l~p~~  389 (496)
                      +++|+.++.....+.||.|+-..+++|++..  +..++.  ..|.|++
T Consensus        99 ~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG  146 (213)
T TIGR03840        99 FCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGA  146 (213)
T ss_pred             EEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCC
Confidence            9999988765434679999998888888422  223333  2566655

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=8.1e-09  Score=100.94  Aligned_cols=108  Identities=22%  Similarity=0.298  Sum_probs=76.3

Q ss_pred             chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC
Q psy11730        274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS  352 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~  352 (496)
                      .+..|++.|...   .+.+|||+|||.|.+++.+++..+ .+++.+|.|..+++.++++...++   .++..+...|..+
T Consensus       146 GS~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~---~~~~~v~~s~~~~  219 (300)
T COG2813         146 GSRLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG---VENTEVWASNLYE  219 (300)
T ss_pred             HHHHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC---CCccEEEEecccc
Confidence            344444444322   345999999999999999999887 899999999999999998765443   3333566666554


Q ss_pred             ccccCCCceeEEEEccccccccchHh-----Hhhe--eeecCCCC
Q psy11730        353 LSAVIHSKFDIILTSETIYSVANYNK-----LLTV--WCLFPTHT  390 (496)
Q Consensus       353 ~~~~~~~~fD~Ii~~~~l~~~~~~~~-----~~~~--~~l~p~~~  390 (496)
                      -.   .++||.|+||+++|-=.....     ++..  ..|.++|.
T Consensus       220 ~v---~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGe  261 (300)
T COG2813         220 PV---EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGE  261 (300)
T ss_pred             cc---cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCE
Confidence            43   349999999999996543332     3332  46677664

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.84  E-value=1.7e-08  Score=86.82  Aligned_cols=95  Identities=14%  Similarity=0.085  Sum_probs=68.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .+.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.++++....   ...+++++.+|+..........||+|++.
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v~~~   95 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF---GVSNIVIVEGDAPEALEDSLPEPDRVFIG   95 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh---CCCceEEEeccccccChhhcCCCCEEEEC
Confidence            467999999999999999988754 79999999999999988654332   24578888888765332224689999997


Q ss_pred             cccccccchHhHhhe--eeecCCC
Q psy11730        368 ETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      ......   ..+++.  ..|.|++
T Consensus        96 ~~~~~~---~~~l~~~~~~Lk~gG  116 (124)
T TIGR02469        96 GSGGLL---QEILEAIWRRLRPGG  116 (124)
T ss_pred             CcchhH---HHHHHHHHHHcCCCC
Confidence            765443   344443  1455554

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.84  E-value=1.6e-08  Score=97.51  Aligned_cols=98  Identities=20%  Similarity=0.221  Sum_probs=79.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ++.+|||||||+|.++..++..++  .+|+++|+++.+++.++++....+  ...++.+..+|+.+.+.. .+.||+|++
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~-~~~~D~I~~  127 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALPFP-DNSFDAVTI  127 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCCCC-CCCccEEEE
Confidence            468999999999999999998885  899999999999999887653221  245789999998876643 578999999


Q ss_pred             ccccccccchHhHhhee--eecCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ..++++..++..+++..  .+.|++
T Consensus       128 ~~~l~~~~~~~~~l~~~~~~L~~gG  152 (239)
T PRK00216        128 AFGLRNVPDIDKALREMYRVLKPGG  152 (239)
T ss_pred             ecccccCCCHHHHHHHHHHhccCCc
Confidence            99999999999888763  455544

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.83  E-value=8.3e-09  Score=94.78  Aligned_cols=92  Identities=20%  Similarity=0.277  Sum_probs=67.1

Q ss_pred             CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSET  369 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~  369 (496)
                      -.++||+|||.|.++..||.+. .+++++|+|+.+++.|+++..     ..++|+|.++++.+...  .+.||+|+++.+
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~-----~~~~V~~~~~dvp~~~P--~~~FDLIV~SEV  115 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLA-----GLPHVEWIQADVPEFWP--EGRFDLIVLSEV  115 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTT-----T-SSEEEEES-TTT-----SS-EEEEEEES-
T ss_pred             cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcC-----CCCCeEEEECcCCCCCC--CCCeeEEEEehH
Confidence            4589999999999999998876 689999999999999998752     35799999999877543  689999999999


Q ss_pred             cccccchHh---Hhhee--eecCCC
Q psy11730        370 IYSVANYNK---LLTVW--CLFPTH  389 (496)
Q Consensus       370 l~~~~~~~~---~~~~~--~l~p~~  389 (496)
                      +|++.+.+.   ++...  .|-|+|
T Consensus       116 lYYL~~~~~L~~~l~~l~~~L~pgG  140 (201)
T PF05401_consen  116 LYYLDDAEDLRAALDRLVAALAPGG  140 (201)
T ss_dssp             GGGSSSHHHHHHHHHHHHHTEEEEE
T ss_pred             hHcCCCHHHHHHHHHHHHHHhCCCC
Confidence            999976543   33331  455655

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.83  E-value=1.8e-08  Score=95.92  Aligned_cols=107  Identities=13%  Similarity=0.133  Sum_probs=77.4

Q ss_pred             hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      .-.+...+.+... .++.+|||||||+|.++..+++...  .+|+++|+++++++.++++....   ...++++..+|..
T Consensus        61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~---g~~~v~~~~gd~~  137 (212)
T PRK13942         61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL---GYDNVEVIVGDGT  137 (212)
T ss_pred             cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCeEEEECCcc
Confidence            3344455555444 3578999999999999999887643  69999999999999998765432   2468999999987


Q ss_pred             CccccCCCceeEEEEccccccccchHhHhheeeecCCC
Q psy11730        352 SLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTH  389 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~  389 (496)
                      ..... ...||+|++......++  +.+++  .|.|++
T Consensus       138 ~~~~~-~~~fD~I~~~~~~~~~~--~~l~~--~LkpgG  170 (212)
T PRK13942        138 LGYEE-NAPYDRIYVTAAGPDIP--KPLIE--QLKDGG  170 (212)
T ss_pred             cCCCc-CCCcCEEEECCCcccch--HHHHH--hhCCCc
Confidence            65432 57899999987776553  33444  355555

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.83  E-value=1.5e-08  Score=100.28  Aligned_cols=84  Identities=15%  Similarity=0.204  Sum_probs=65.9

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC----CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA----AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS  352 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~----~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~  352 (496)
                      .+++.|.+.....+.+|||+|||+|.++..+++..+    ..|+|+|+|+.|++.|+++        ..++.+..+|..+
T Consensus        73 ~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~--------~~~~~~~~~d~~~  144 (272)
T PRK11088         73 AVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR--------YPQVTFCVASSHR  144 (272)
T ss_pred             HHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh--------CCCCeEEEeeccc
Confidence            345555555444567899999999999999887543    3799999999999998754        2468899999988


Q ss_pred             ccccCCCceeEEEEccc
Q psy11730        353 LSAVIHSKFDIILTSET  369 (496)
Q Consensus       353 ~~~~~~~~fD~Ii~~~~  369 (496)
                      ++.. +++||+|++...
T Consensus       145 lp~~-~~sfD~I~~~~~  160 (272)
T PRK11088        145 LPFA-DQSLDAIIRIYA  160 (272)
T ss_pred             CCCc-CCceeEEEEecC
Confidence            8754 679999998655

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.81  E-value=7.3e-09  Score=104.63  Aligned_cols=80  Identities=19%  Similarity=0.227  Sum_probs=65.7

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ..+.+|||+|||+|.+++.++..+ .+|+|+|+|+.|++.|+++....+   ..+++|+.+|+.++.....+.||+|+++
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~---l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELG---LTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            457899999999999999999876 689999999999999887654432   3689999999987654224579999999


Q ss_pred             cccc
Q psy11730        368 ETIY  371 (496)
Q Consensus       368 ~~l~  371 (496)
                      ++-.
T Consensus       248 PPr~  251 (315)
T PRK03522        248 PPRR  251 (315)
T ss_pred             CCCC
Confidence            8843

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.81  E-value=7.1e-09  Score=97.92  Aligned_cols=80  Identities=14%  Similarity=0.032  Sum_probs=63.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc-CCccc-cCCCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW-GSLSA-VIHSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~-~~~~~-~~~~~fD~Ii  365 (496)
                      .+.+|||||||+|.++..+++..+ .+|+|+|+|++|++.++++....   ...++.++++|+ +.++. ...++||+|+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE---GLTNLRLLCGDAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc---CCCCEEEEecCHHHHHHHHcCccccceEE
Confidence            577999999999999999988755 68999999999999988765332   246799999998 66552 2257899999


Q ss_pred             Eccccc
Q psy11730        366 TSETIY  371 (496)
Q Consensus       366 ~~~~l~  371 (496)
                      ++.+..
T Consensus       117 ~~~~~p  122 (202)
T PRK00121        117 LNFPDP  122 (202)
T ss_pred             EECCCC
Confidence            976543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.80  E-value=1.8e-08  Score=98.14  Aligned_cols=99  Identities=23%  Similarity=0.328  Sum_probs=76.4

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .+.+..+++.+.+.....+.+|||+|||+|.++..++...+ .+++|+|+|+.+++.++.+....+   ..++.++.+|+
T Consensus        70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~  146 (251)
T TIGR03534        70 RPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG---LDNVTFLQSDW  146 (251)
T ss_pred             CCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECch
Confidence            45566676766665554567999999999999999998754 689999999999999887654322   34799999998


Q ss_pred             CCccccCCCceeEEEEccccccccc
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~~  375 (496)
                      .+..  ..++||+|++++++.....
T Consensus       147 ~~~~--~~~~fD~Vi~npPy~~~~~  169 (251)
T TIGR03534       147 FEPL--PGGKFDLIVSNPPYIPEAD  169 (251)
T ss_pred             hccC--cCCceeEEEECCCCCchhh
Confidence            7632  2578999999999775543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.80  E-value=1.9e-08  Score=95.93  Aligned_cols=94  Identities=14%  Similarity=0.113  Sum_probs=71.1

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      .+...+.+... .++.+|||||||+|.++..+++...  .+|+++|+++++++.|+++....+   ..+++++.+|..+.
T Consensus        64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~  140 (215)
T TIGR00080        64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQG  140 (215)
T ss_pred             HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccC
Confidence            34444444443 3578999999999999999988754  469999999999999987654332   46899999998765


Q ss_pred             cccCCCceeEEEEcccccccc
Q psy11730        354 SAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      ... ...||+|++..+..++.
T Consensus       141 ~~~-~~~fD~Ii~~~~~~~~~  160 (215)
T TIGR00080       141 WEP-LAPYDRIYVTAAGPKIP  160 (215)
T ss_pred             Ccc-cCCCCEEEEcCCccccc
Confidence            432 46899999988766653

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.79  E-value=2.7e-08  Score=92.76  Aligned_cols=92  Identities=14%  Similarity=0.171  Sum_probs=67.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.+++.+++.++ .+|+++|+|+.+++.++++....+   ..+++++.+|....   ..++||+|++.
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~---~~~i~~~~~d~~~~---~~~~~D~v~~~  104 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG---CGNIDIIPGEAPIE---LPGKADAIFIG  104 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCeEEEecCchhh---cCcCCCEEEEC
Confidence            578999999999999999988765 689999999999999886653332   35688888887431   14689999998


Q ss_pred             cccccccchHhHhhe--eeecCCC
Q psy11730        368 ETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      ....++   ..+++.  ..|.|++
T Consensus       105 ~~~~~~---~~~l~~~~~~Lk~gG  125 (187)
T PRK08287        105 GSGGNL---TAIIDWSLAHLHPGG  125 (187)
T ss_pred             CCccCH---HHHHHHHHHhcCCCe
Confidence            765544   334432  1455554

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.78  E-value=1.7e-08  Score=102.67  Aligned_cols=94  Identities=21%  Similarity=0.253  Sum_probs=70.2

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ..+|||||||+|.++..+++.++ .+|+++|+|+.|++.++.+...++    -..+++.+|..+..   .+.||+|++++
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~----l~~~~~~~D~~~~~---~~~fDlIvsNP  269 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG----LEGEVFASNVFSDI---KGRFDMIISNP  269 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCEEEEccccccc---CCCccEEEECC
Confidence            45899999999999999998876 689999999999999887654322    13466777765422   57899999999


Q ss_pred             ccccc-----cchHhHhhe--eeecCCCC
Q psy11730        369 TIYSV-----ANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       369 ~l~~~-----~~~~~~~~~--~~l~p~~~  390 (496)
                      ++|..     ...+.+++.  ..|.|+|.
T Consensus       270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~  298 (342)
T PRK09489        270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGE  298 (342)
T ss_pred             CccCCccccHHHHHHHHHHHHHhcCcCCE
Confidence            99863     334556554  25667664

>PHA03411 putative methyltransferase; Provisional

Probab=98.78  E-value=1.5e-08  Score=98.58  Aligned_cols=76  Identities=17%  Similarity=0.226  Sum_probs=63.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .+.+|||+|||+|.+++.++... ..+|+|+|+|+.|++.++++.        .++.++++|+.+...  ...||+|+++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~D~~e~~~--~~kFDlIIsN  133 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWITSDVFEFES--NEKFDVVISN  133 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEECchhhhcc--cCCCcEEEEc
Confidence            35699999999999999987764 479999999999999987642        368899999987653  4689999999


Q ss_pred             ccccccc
Q psy11730        368 ETIYSVA  374 (496)
Q Consensus       368 ~~l~~~~  374 (496)
                      +++++..
T Consensus       134 PPF~~l~  140 (279)
T PHA03411        134 PPFGKIN  140 (279)
T ss_pred             CCccccC
Confidence            9999863

>PRK06922 hypothetical protein; Provisional

Probab=98.78  E-value=1.3e-08  Score=109.24  Aligned_cols=98  Identities=20%  Similarity=0.173  Sum_probs=74.2

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii~  366 (496)
                      ++.+|||||||+|..+..+++..+ .+|+|+|+|+.|++.|+++...    ...++.++.+|..+++. ..+++||+|++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~----~g~~ie~I~gDa~dLp~~fedeSFDvVVs  493 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN----EGRSWNVIKGDAINLSSSFEKESVDTIVY  493 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh----cCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence            578999999999999988887654 7999999999999998865422    12467888999887652 23578999999


Q ss_pred             cccccccc-------------chHhHhhee--eecCCCC
Q psy11730        367 SETIYSVA-------------NYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       367 ~~~l~~~~-------------~~~~~~~~~--~l~p~~~  390 (496)
                      +.++|++.             +...+++..  .|.|+|.
T Consensus       494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGr  532 (677)
T PRK06922        494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGR  532 (677)
T ss_pred             chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcE
Confidence            99998752             345556552  5666653

>PRK14968 putative methyltransferase; Provisional

Probab=98.78  E-value=3.2e-08  Score=91.83  Aligned_cols=94  Identities=24%  Similarity=0.223  Sum_probs=71.4

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      ..++..+++.+..   .++++|||+|||+|.++..++.. ..+|+|+|+|+++++.++++....+. ...++.++++|+.
T Consensus         9 ~~~~~~l~~~~~~---~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~   83 (188)
T PRK14968          9 AEDSFLLAENAVD---KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNI-RNNGVEVIRSDLF   83 (188)
T ss_pred             chhHHHHHHhhhc---cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCC-CCcceEEEecccc
Confidence            6667777777754   36789999999999999999888 57899999999999998765433221 1222888888876


Q ss_pred             CccccCCCceeEEEEcccccc
Q psy11730        352 SLSAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~  372 (496)
                      +...  ...||+|++++++..
T Consensus        84 ~~~~--~~~~d~vi~n~p~~~  102 (188)
T PRK14968         84 EPFR--GDKFDVILFNPPYLP  102 (188)
T ss_pred             cccc--ccCceEEEECCCcCC
Confidence            5432  458999999988765

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.77  E-value=3.6e-08  Score=93.96  Aligned_cols=96  Identities=23%  Similarity=0.285  Sum_probs=79.2

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|.++..+++.++  .+++|+|+++.+++.++++..     ...++++..+|+.+.+.. .+.||+|+
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~~~-~~~~D~i~  111 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-----LPLNIEFIQADAEALPFE-DNSFDAVT  111 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-----cCCCceEEecchhcCCCC-CCcEEEEE
Confidence            3678999999999999999998877  489999999999998876542     245788999998887643 57899999


Q ss_pred             EccccccccchHhHhhee--eecCCC
Q psy11730        366 TSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       366 ~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +...+++..++..+++.+  .|.|++
T Consensus       112 ~~~~~~~~~~~~~~l~~~~~~L~~gG  137 (223)
T TIGR01934       112 IAFGLRNVTDIQKALREMYRVLKPGG  137 (223)
T ss_pred             EeeeeCCcccHHHHHHHHHHHcCCCc
Confidence            999999999999888763  555654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.76  E-value=2.1e-08  Score=107.14  Aligned_cols=96  Identities=20%  Similarity=0.213  Sum_probs=73.7

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii~  366 (496)
                      .++++|||||||+|.++..+++.+ .+|+|+|+|+.|++.++..+     ....++.++.+|+..... .+.++||+|++
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~  109 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-----GHYKNVKFMCADVTSPDLNISDGSVDLIFS  109 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-----ccCCceEEEEecccccccCCCCCCEEEEeh
Confidence            356799999999999999998874 58999999999998765422     124678999999864322 22578999999


Q ss_pred             ccccccccc--hHhHhhee--eecCCC
Q psy11730        367 SETIYSVAN--YNKLLTVW--CLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~--~~~~~~~~--~l~p~~  389 (496)
                      +.+++|+++  ...+++++  .|.|++
T Consensus       110 ~~~l~~l~~~~~~~~l~~~~r~Lk~gG  136 (475)
T PLN02336        110 NWLLMYLSDKEVENLAERMVKWLKVGG  136 (475)
T ss_pred             hhhHHhCCHHHHHHHHHHHHHhcCCCe
Confidence            999999976  45666653  455655

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.76  E-value=1.6e-08  Score=96.82  Aligned_cols=98  Identities=29%  Similarity=0.300  Sum_probs=77.4

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++.....   ..++++...++.+.+....+.||+|++.
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~  119 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM  119 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence            4578999999999999999888765 69999999999998876543211   2268888888887665334789999999


Q ss_pred             cccccccchHhHhhee--eecCCC
Q psy11730        368 ETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      .++++..++..+++..  .+.|++
T Consensus       120 ~~l~~~~~~~~~l~~~~~~L~~gG  143 (224)
T TIGR01983       120 EVLEHVPDPQAFIRACAQLLKPGG  143 (224)
T ss_pred             hHHHhCCCHHHHHHHHHHhcCCCc
Confidence            9999999999988763  455554

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.76  E-value=1.9e-08  Score=96.99  Aligned_cols=106  Identities=26%  Similarity=0.332  Sum_probs=81.4

Q ss_pred             HHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        279 LNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       279 ~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      ++++.... ..++.+|||||||+|.++..+++.+ .+|+++|+++.+++.++++....    ..++++...++.+.+...
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~  111 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALES----GLKIDYRQTTAEELAAEH  111 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHc----CCceEEEecCHHHhhhhc
Confidence            45555554 4568899999999999999988875 57999999999999887654322    125778888887765333


Q ss_pred             CCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        358 HSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      .+.||+|++..++++..++..+++..  .+.|++
T Consensus       112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG  145 (233)
T PRK05134        112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGG  145 (233)
T ss_pred             CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCc
Confidence            57899999999999999998887763  455554

>PHA03412 putative methyltransferase; Provisional

Probab=98.74  E-value=1.8e-08  Score=95.73  Aligned_cols=76  Identities=13%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc----cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN----GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~----~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      .+.+|||+|||+|.+++.+++.    ....|+|+|+++.+++.|+++.        .++.++.+|+.....  +++||+|
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~~~~~D~~~~~~--~~~FDlI  118 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEATWINADALTTEF--DTLFDMA  118 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCEEEEcchhcccc--cCCccEE
Confidence            4679999999999999998875    2358999999999999998642        357889999876543  5789999


Q ss_pred             EEcccccccc
Q psy11730        365 LTSETIYSVA  374 (496)
Q Consensus       365 i~~~~l~~~~  374 (496)
                      |+|+++.-..
T Consensus       119 IsNPPY~~~~  128 (241)
T PHA03412        119 ISNPPFGKIK  128 (241)
T ss_pred             EECCCCCCcc
Confidence            9999998653

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.74  E-value=2.3e-08  Score=98.39  Aligned_cols=100  Identities=17%  Similarity=0.253  Sum_probs=72.3

Q ss_pred             CCCeEEEecCcCCH----HHHHHHHccC------CeEEEEeCCHHHHHHhcCccccc----c------------------
Q psy11730        289 DKLSVLDVGCGAGL----LGLYTLMNGA------AHVSFQDYNQEVIESLTLPNILM----N------------------  336 (496)
Q Consensus       289 ~~~~VLDlGcGtG~----~~~~la~~~~------~~v~giD~s~~~i~~a~~~~~~~----~------------------  336 (496)
                      .+.+|+|+|||||.    +++.+++.+.      .+|+|+|+|+.|++.|++..-..    +                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            35699999999996    5555555432      47999999999999998753110    0                  


Q ss_pred             --cCCCCceEEEecccCCccccCCCceeEEEEccccccccch--HhHhhee--eecCCC
Q psy11730        337 --TDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANY--NKLLTVW--CLFPTH  389 (496)
Q Consensus       337 --~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~~--~l~p~~  389 (496)
                        .....+|+|..+|+.+.+.. .++||+|+|..+++|+++.  ..+++..  .|.|+|
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~-~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG  236 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPP-LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGG  236 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCc-cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCe
Confidence              00124789999999886543 6789999999999999643  4566653  566665

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.73  E-value=3.4e-08  Score=98.18  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=64.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .+.+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.|+++....+  ...+++++.+|+.+...  ...||+|+++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~~~~--~~~fD~Iv~N  196 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFAALP--GRKYDLIVSN  196 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhccC--CCCccEEEEC
Confidence            357899999999999999998765 689999999999999987754332  23579999999754321  4579999999


Q ss_pred             cccccc
Q psy11730        368 ETIYSV  373 (496)
Q Consensus       368 ~~l~~~  373 (496)
                      +++...
T Consensus       197 PPy~~~  202 (284)
T TIGR03533       197 PPYVDA  202 (284)
T ss_pred             CCCCCc
Confidence            986543

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.72  E-value=1.8e-08  Score=94.63  Aligned_cols=82  Identities=11%  Similarity=0.092  Sum_probs=65.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc--cCCCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA--VIHSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Ii  365 (496)
                      .+.+|||||||+|.++..+++..+ ..|+|+|+++.|++.|+++....   ...|++++++|+.++..  ...+.+|.|+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~---~l~ni~~i~~d~~~~~~~~~~~~~~d~v~   92 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL---GLKNLHVLCGDANELLDKFFPDGSLSKVF   92 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh---CCCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence            456999999999999999998776 68999999999999988765333   24589999999987542  2246899999


Q ss_pred             Eccccccc
Q psy11730        366 TSETIYSV  373 (496)
Q Consensus       366 ~~~~l~~~  373 (496)
                      ++.+..+.
T Consensus        93 ~~~pdpw~  100 (194)
T TIGR00091        93 LNFPDPWP  100 (194)
T ss_pred             EECCCcCC
Confidence            98775544

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.72  E-value=3.4e-08  Score=99.21  Aligned_cols=79  Identities=13%  Similarity=0.181  Sum_probs=63.9

Q ss_pred             CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccc
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSET  369 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~  369 (496)
                      .+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.|+++....+  ...+++++++|+.+...  ..+||+|+++++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP  210 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFAALP--GRRYDLIVSNPP  210 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence            6899999999999999998765 789999999999999988764432  23579999999765322  458999999998


Q ss_pred             cccc
Q psy11730        370 IYSV  373 (496)
Q Consensus       370 l~~~  373 (496)
                      +.-.
T Consensus       211 yi~~  214 (307)
T PRK11805        211 YVDA  214 (307)
T ss_pred             CCCc
Confidence            7543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.71  E-value=6.2e-08  Score=92.50  Aligned_cols=112  Identities=17%  Similarity=0.148  Sum_probs=77.4

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccc---------cCCCCceEEEe
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN---------TDNLEKCKFYH  347 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~---------~~~~~~v~~~~  347 (496)
                      .|.+++......++.+|||+|||.|..+++||++|. +|+|||+|+.+++.+...+....         .....+|++.+
T Consensus        25 ~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~  103 (218)
T PRK13255         25 LLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYC  103 (218)
T ss_pred             HHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEE
Confidence            455555432233577999999999999999999876 69999999999998643221110         11246789999


Q ss_pred             cccCCccccCCCceeEEEEccccccccc--hHhHhhee--eecCCC
Q psy11730        348 GDWGSLSAVIHSKFDIILTSETIYSVAN--YNKLLTVW--CLFPTH  389 (496)
Q Consensus       348 ~d~~~~~~~~~~~fD~Ii~~~~l~~~~~--~~~~~~~~--~l~p~~  389 (496)
                      +|+.++.......||.|+-..++++++.  .+.+++..  .|.|++
T Consensus       104 ~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG  149 (218)
T PRK13255        104 GDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC  149 (218)
T ss_pred             CcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence            9999886543468999999888888842  22333331  455655

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.70  E-value=4.6e-08  Score=97.40  Aligned_cols=99  Identities=18%  Similarity=0.186  Sum_probs=72.3

Q ss_pred             cchHHHHHHHHhCC-CCCC-CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        273 ECTFDLLNFIKDNV-AVDK-LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       273 ~~~~~l~~~l~~~~-~~~~-~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      +....+++.+.... ...+ .+|||+|||+|.+++.++...+ .+|+|+|+|+++++.|+++....+  ...+++|+.+|
T Consensus        96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d  173 (284)
T TIGR00536        96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSN  173 (284)
T ss_pred             CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECc
Confidence            44455555554332 2222 6899999999999999998766 689999999999999988754332  22459999999


Q ss_pred             cCCccccCCCceeEEEEccccccccc
Q psy11730        350 WGSLSAVIHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       350 ~~~~~~~~~~~fD~Ii~~~~l~~~~~  375 (496)
                      +.+...  ..+||+|++++++....+
T Consensus       174 ~~~~~~--~~~fDlIvsNPPyi~~~~  197 (284)
T TIGR00536       174 LFEPLA--GQKIDIIVSNPPYIDEED  197 (284)
T ss_pred             hhccCc--CCCccEEEECCCCCCcch
Confidence            876321  348999999999765543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02672 methionine S-methyltransferase

Probab=98.70  E-value=4.5e-08  Score=111.39  Aligned_cols=110  Identities=15%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             ecchHHHHHHHHhCCC--CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCccccccc-----------
Q psy11730        272 WECTFDLLNFIKDNVA--VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNT-----------  337 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~--~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~-----------  337 (496)
                      -+.+..+++.|.....  +++.+|||||||+|.+++.+++... .+|+|+|+|+++++.|+++...++.           
T Consensus        99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~  178 (1082)
T PLN02672         99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE  178 (1082)
T ss_pred             chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence            5777888887544321  3467999999999999999998765 7999999999999999887654321           


Q ss_pred             --CCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhh
Q psy11730        338 --DNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLT  381 (496)
Q Consensus       338 --~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~  381 (496)
                        ....+++|+++|+.+........||+|+||+++-...+.+.+-+
T Consensus       179 ~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~  224 (1082)
T PLN02672        179 GKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSK  224 (1082)
T ss_pred             cccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcCh
Confidence              12357999999987654321237999999999877666554433

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.70  E-value=4.3e-08  Score=96.92  Aligned_cols=90  Identities=17%  Similarity=0.124  Sum_probs=70.1

Q ss_pred             HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..+++.+.+...+ ++.+|||||||+|.++..+++.+. +|+|+|+++.|++.++++..      ..+++++++|+.+++
T Consensus        28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~~~  100 (272)
T PRK00274         28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALKVD  100 (272)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhcCC
Confidence            3455666665543 578999999999999999999876 89999999999999876431      258999999999876


Q ss_pred             ccCCCceeEEEEccccccc
Q psy11730        355 AVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .. +-.+|.|+++.+++..
T Consensus       101 ~~-~~~~~~vv~NlPY~is  118 (272)
T PRK00274        101 LS-ELQPLKVVANLPYNIT  118 (272)
T ss_pred             HH-HcCcceEEEeCCccch
Confidence            42 1126999999986554

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.69  E-value=9.8e-08  Score=90.81  Aligned_cols=94  Identities=15%  Similarity=0.077  Sum_probs=70.4

Q ss_pred             hHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        275 TFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       275 ~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ...+...+.....+ ++.+|||+|||+|.++..+++.+ .+|+++|+++++++.++++....   ...++++..+|..+.
T Consensus        63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~  138 (212)
T PRK00312         63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQL---GLHNVSVRHGDGWKG  138 (212)
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHC---CCCceEEEECCcccC
Confidence            33444555554443 57899999999999999888775 58999999999999988765433   245689999997653


Q ss_pred             cccCCCceeEEEEccccccc
Q psy11730        354 SAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      ... .+.||+|++..++.++
T Consensus       139 ~~~-~~~fD~I~~~~~~~~~  157 (212)
T PRK00312        139 WPA-YAPFDRILVTAAAPEI  157 (212)
T ss_pred             CCc-CCCcCEEEEccCchhh
Confidence            221 4789999998877766

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.68  E-value=4.5e-08  Score=95.62  Aligned_cols=87  Identities=24%  Similarity=0.278  Sum_probs=63.0

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      ++....+++.+... ..++.+|||+|||+|.+++.+++.|..+|+|+|+|+.|++.|+++...++.  ...+.+..+   
T Consensus       103 h~tt~~~l~~l~~~-~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~---  176 (250)
T PRK00517        103 HPTTRLCLEALEKL-VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG---  176 (250)
T ss_pred             CHHHHHHHHHHHhh-cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC---
Confidence            55556666676654 346889999999999999998888888899999999999998876543321  122332222   


Q ss_pred             CccccCCCceeEEEEcccc
Q psy11730        352 SLSAVIHSKFDIILTSETI  370 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l  370 (496)
                            +.+||+|+++...
T Consensus       177 ------~~~fD~Vvani~~  189 (250)
T PRK00517        177 ------DLKADVIVANILA  189 (250)
T ss_pred             ------CCCcCEEEEcCcH
Confidence                  2279999997553

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.67  E-value=4.4e-09  Score=97.60  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=77.9

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      |.-...|.+.|.....-.=+++||||||||..+..+ +.-..+++|+|+|..|+++|.++.....        ..+++..
T Consensus       108 Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~l-R~~a~~ltGvDiS~nMl~kA~eKg~YD~--------L~~Aea~  178 (287)
T COG4976         108 YSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEAL-RDMADRLTGVDISENMLAKAHEKGLYDT--------LYVAEAV  178 (287)
T ss_pred             CccHHHHHHHHHhccCCccceeeecccCcCcccHhH-HHHHhhccCCchhHHHHHHHHhccchHH--------HHHHHHH
Confidence            334556666666654333579999999999999995 4445689999999999999998764332        1334433


Q ss_pred             Cccc-cCCCceeEEEEccccccccchHhHhhe--eeecCCC
Q psy11730        352 SLSA-VIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       352 ~~~~-~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      .+.. ..++.||+|++.+++.++.+++.++..  -.|.|++
T Consensus       179 ~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gG  219 (287)
T COG4976         179 LFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGG  219 (287)
T ss_pred             HHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCc
Confidence            3322 115789999999999999999998864  2455554

>KOG1541|consensus

Probab=98.66  E-value=4.4e-08  Score=90.55  Aligned_cols=76  Identities=20%  Similarity=0.252  Sum_probs=62.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ...-|||||||||..+..+...| ..++|+|+|+.|++.|..+-.+        -.++.+|+.+-.....+.||.+|+..
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e--------gdlil~DMG~GlpfrpGtFDg~ISIS  120 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE--------GDLILCDMGEGLPFRPGTFDGVISIS  120 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh--------cCeeeeecCCCCCCCCCccceEEEee
Confidence            45689999999999999988888 7899999999999998865432        24688888865544579999999998


Q ss_pred             ccccc
Q psy11730        369 TIYSV  373 (496)
Q Consensus       369 ~l~~~  373 (496)
                      +++++
T Consensus       121 AvQWL  125 (270)
T KOG1541|consen  121 AVQWL  125 (270)
T ss_pred             eeeee
Confidence            88776

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.66  E-value=6.3e-08  Score=94.53  Aligned_cols=95  Identities=15%  Similarity=0.127  Sum_probs=69.2

Q ss_pred             cchHHHHHHHHhCCC-C-CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        273 ECTFDLLNFIKDNVA-V-DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       273 ~~~~~l~~~l~~~~~-~-~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      +.+..|++.+..... . .+.+|||+|||+|.+++.++.... .+|+|+|+|+.+++.++++...+      +++++.+|
T Consensus        68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D  141 (251)
T TIGR03704        68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGD  141 (251)
T ss_pred             ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEee
Confidence            445666666655432 1 245899999999999999987644 68999999999999988765322      24788899


Q ss_pred             cCCccc-cCCCceeEEEEccccccc
Q psy11730        350 WGSLSA-VIHSKFDIILTSETIYSV  373 (496)
Q Consensus       350 ~~~~~~-~~~~~fD~Ii~~~~l~~~  373 (496)
                      +.+... ...+.||+|++++++...
T Consensus       142 ~~~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704       142 LYDALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             chhhcchhcCCCEeEEEECCCCCCc
Confidence            865332 113579999999997643

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.65  E-value=9.2e-08  Score=93.88  Aligned_cols=89  Identities=17%  Similarity=0.157  Sum_probs=71.1

Q ss_pred             hHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        275 TFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       275 ~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ...+++.+.+...+ ++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++...     ..+++++++|+.++
T Consensus        14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~   87 (258)
T PRK14896         14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKV   87 (258)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccC
Confidence            34556666665543 57899999999999999999884 5899999999999998865421     45899999999887


Q ss_pred             cccCCCceeEEEEcccccc
Q psy11730        354 SAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~  372 (496)
                      +.   ..||.|+++.+++.
T Consensus        88 ~~---~~~d~Vv~NlPy~i  103 (258)
T PRK14896         88 DL---PEFNKVVSNLPYQI  103 (258)
T ss_pred             Cc---hhceEEEEcCCccc
Confidence            63   35899999999764

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.65  E-value=1e-07  Score=89.80  Aligned_cols=97  Identities=18%  Similarity=0.246  Sum_probs=70.7

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|.+++.++.. +. .+|+++|+++.|++.++++....+  ...++.++.+|+.+......+.||.|+
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l~~~~~~~D~V~  116 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEILFTINEKFDRIF  116 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhHhhcCCCCCEEE
Confidence            46889999999999999998764 33 689999999999999887654322  246789999998765433346899999


Q ss_pred             EccccccccchHhHhhee--eecCCC
Q psy11730        366 TSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       366 ~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +...   ..++..+++..  .|.|++
T Consensus       117 ~~~~---~~~~~~~l~~~~~~LkpgG  139 (198)
T PRK00377        117 IGGG---SEKLKEIISASWEIIKKGG  139 (198)
T ss_pred             ECCC---cccHHHHHHHHHHHcCCCc
Confidence            9642   23445555542  455655

>PLN03075 nicotianamine synthase; Provisional

Probab=98.65  E-value=1.1e-07  Score=93.88  Aligned_cols=99  Identities=12%  Similarity=0.083  Sum_probs=73.8

Q ss_pred             CCCCeEEEecCcCC-HHHHHHHH-ccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEE
Q psy11730        288 VDKLSVLDVGCGAG-LLGLYTLM-NGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG-~~~~~la~-~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      ..+++|+|||||.| ..++.+++ ..+ .+++|+|.++++++.|++.... ..+...+++|..+|+.+.... .+.||+|
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-~~gL~~rV~F~~~Da~~~~~~-l~~FDlV  199 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-DPDLSKRMFFHTADVMDVTES-LKEYDVV  199 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-ccCccCCcEEEECchhhcccc-cCCcCEE
Confidence            37889999999966 44554443 444 6899999999999999876532 123456899999998876432 4789999


Q ss_pred             EEccccccc--cchHhHhhee--eecCCC
Q psy11730        365 LTSETIYSV--ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       365 i~~~~l~~~--~~~~~~~~~~--~l~p~~  389 (496)
                      ++. +++++  +++..+++..  .+.|++
T Consensus       200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG  227 (296)
T PLN03075        200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGA  227 (296)
T ss_pred             EEe-cccccccccHHHHHHHHHHhcCCCc
Confidence            999 87777  7888888763  566655

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.64  E-value=5.8e-08  Score=102.72  Aligned_cols=94  Identities=18%  Similarity=0.140  Sum_probs=71.6

Q ss_pred             HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..|++.+.+...+ ++.+|||+|||+|.+++.+++.+ .+|+|+|+|++|++.|+++...++   ..+++|+.+|+.+..
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~---~~~v~~~~~d~~~~l  358 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNG---LDNVTFYHANLEEDF  358 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEeChHHhh
Confidence            3455666555543 46799999999999999988876 689999999999999987654332   457999999987643


Q ss_pred             c---cCCCceeEEEEccccccc
Q psy11730        355 A---VIHSKFDIILTSETIYSV  373 (496)
Q Consensus       355 ~---~~~~~fD~Ii~~~~l~~~  373 (496)
                      .   ...++||+|+++++..-.
T Consensus       359 ~~~~~~~~~fD~Vi~dPPr~g~  380 (443)
T PRK13168        359 TDQPWALGGFDKVLLDPPRAGA  380 (443)
T ss_pred             hhhhhhcCCCCEEEECcCCcCh
Confidence            1   113579999999987643

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.64  E-value=1.2e-07  Score=93.76  Aligned_cols=98  Identities=22%  Similarity=0.331  Sum_probs=74.6

Q ss_pred             ecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        272 WECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      .+....+++.+..... .++.+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.++++..   .....++.++.+|
T Consensus        90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~---~~~~~~i~~~~~d  166 (275)
T PRK09328         90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK---HGLGARVEFLQGD  166 (275)
T ss_pred             CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---hCCCCcEEEEEcc
Confidence            4455666676664433 3567999999999999999998764 789999999999999887653   1234689999999


Q ss_pred             cCCccccCCCceeEEEEcccccccc
Q psy11730        350 WGSLSAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       350 ~~~~~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      +.+...  .++||+|++++++....
T Consensus       167 ~~~~~~--~~~fD~Iv~npPy~~~~  189 (275)
T PRK09328        167 WFEPLP--GGRFDLIVSNPPYIPEA  189 (275)
T ss_pred             ccCcCC--CCceeEEEECCCcCCcc
Confidence            855332  47899999999975543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.64  E-value=7.3e-08  Score=103.24  Aligned_cols=81  Identities=23%  Similarity=0.364  Sum_probs=63.8

Q ss_pred             CCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      +.+|||||||+|.+++.++... ..+|+|+|+|+.+++.|+++....+  ...++.++.+|+.+...  .++||+|+|++
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~~~~--~~~fDlIvsNP  214 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFENIE--KQKFDFIVSNP  214 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--CccceeeeecchhhhCc--CCCccEEEECC
Confidence            4689999999999999988764 4799999999999999987754332  23578999999754321  46899999999


Q ss_pred             cccccc
Q psy11730        369 TIYSVA  374 (496)
Q Consensus       369 ~l~~~~  374 (496)
                      ++....
T Consensus       215 PYi~~~  220 (506)
T PRK01544        215 PYISHS  220 (506)
T ss_pred             CCCCch
Confidence            876543

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.60  E-value=1.2e-07  Score=96.98  Aligned_cols=84  Identities=17%  Similarity=0.114  Sum_probs=68.1

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc-ccCCCceeEE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS-AVIHSKFDII  364 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~I  364 (496)
                      +..+..+||||||+|.+++.+|+..+ ..++|+|+++.|++.+.++....   ...|+.++++|+..+. ...++++|.|
T Consensus       120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~---gL~NV~~i~~DA~~ll~~~~~~s~D~I  196 (390)
T PRK14121        120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL---NLKNLLIINYDARLLLELLPSNSVEKI  196 (390)
T ss_pred             CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---CCCcEEEEECCHHHhhhhCCCCceeEE
Confidence            34577999999999999999999876 68999999999999988776443   3578999999987642 2236899999


Q ss_pred             EEccccccc
Q psy11730        365 LTSETIYSV  373 (496)
Q Consensus       365 i~~~~l~~~  373 (496)
                      +++.+..+.
T Consensus       197 ~lnFPdPW~  205 (390)
T PRK14121        197 FVHFPVPWD  205 (390)
T ss_pred             EEeCCCCcc
Confidence            998776654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.60  E-value=1.7e-07  Score=88.99  Aligned_cols=86  Identities=17%  Similarity=0.214  Sum_probs=62.5

Q ss_pred             hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      .+.+.+....... .++.+|||||||+|.++..+++...  .+|+|||+++ |.             ...++.++++|+.
T Consensus        36 ~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------------~~~~v~~i~~D~~  101 (209)
T PRK11188         36 WFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------------PIVGVDFLQGDFR  101 (209)
T ss_pred             HHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------------CCCCcEEEecCCC
Confidence            4445555554432 3477999999999999999888753  6899999998 21             1346899999998


Q ss_pred             Ccc-------ccCCCceeEEEEcccccccc
Q psy11730        352 SLS-------AVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       352 ~~~-------~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      +..       ....++||+|+|+.+.++..
T Consensus       102 ~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g  131 (209)
T PRK11188        102 DELVLKALLERVGDSKVQVVMSDMAPNMSG  131 (209)
T ss_pred             ChHHHHHHHHHhCCCCCCEEecCCCCccCC
Confidence            853       12257899999987666653

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.58  E-value=7.9e-08  Score=99.36  Aligned_cols=80  Identities=16%  Similarity=0.219  Sum_probs=65.0

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ..+.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+++...++   ..+++|+.+|+.+.......+||+|+++
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~vi~D  307 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLG---LDNLSFAALDSAKFATAQMSAPELVLVN  307 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence            457899999999999999988766 689999999999999987654432   3589999999877543223569999999


Q ss_pred             cccc
Q psy11730        368 ETIY  371 (496)
Q Consensus       368 ~~l~  371 (496)
                      ++..
T Consensus       308 PPr~  311 (374)
T TIGR02085       308 PPRR  311 (374)
T ss_pred             CCCC
Confidence            9964

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.57  E-value=1.9e-07  Score=76.30  Aligned_cols=88  Identities=24%  Similarity=0.355  Sum_probs=69.4

Q ss_pred             eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccc
Q psy11730        292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~  371 (496)
                      +|+|+|||+|.++..++.....+++++|+++.++..+++...   .....++.++..|+.+......+.||+|+++.+++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~   77 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAA---ALLADNVEVLKGDAEELPPEADESFDVIISDPPLH   77 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHh---cccccceEEEEcChhhhccccCCceEEEEEcccee
Confidence            589999999999999888566899999999999988773211   12356789999998876642257899999999999


Q ss_pred             c-ccchHhHhhe
Q psy11730        372 S-VANYNKLLTV  382 (496)
Q Consensus       372 ~-~~~~~~~~~~  382 (496)
                      + ......+++.
T Consensus        78 ~~~~~~~~~l~~   89 (107)
T cd02440          78 HLVEDLARFLEE   89 (107)
T ss_pred             ehhhHHHHHHHH
Confidence            9 6666666665

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG1271|consensus

Probab=98.56  E-value=1.3e-07  Score=84.90  Aligned_cols=93  Identities=22%  Similarity=0.300  Sum_probs=70.9

Q ss_pred             hHHHHHHHHhCCC---C-CC-CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEec
Q psy11730        275 TFDLLNFIKDNVA---V-DK-LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHG  348 (496)
Q Consensus       275 ~~~l~~~l~~~~~---~-~~-~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~  348 (496)
                      ...++.|+.+.+.   + +. .+|||||||.|.+...|++.+. ...+|+|+|+++++.|+..+...  +....|+|.+.
T Consensus        48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~--~~~n~I~f~q~  125 (227)
T KOG1271|consen   48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD--GFSNEIRFQQL  125 (227)
T ss_pred             HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc--CCCcceeEEEe
Confidence            3467888887765   2 23 3999999999999999999988 45999999999999977554322  23344999999


Q ss_pred             ccCCccccCCCceeEEEEcccc
Q psy11730        349 DWGSLSAVIHSKFDIILTSETI  370 (496)
Q Consensus       349 d~~~~~~~~~~~fD~Ii~~~~l  370 (496)
                      |+.+.... .++||+|+--.++
T Consensus       126 DI~~~~~~-~~qfdlvlDKGT~  146 (227)
T KOG1271|consen  126 DITDPDFL-SGQFDLVLDKGTL  146 (227)
T ss_pred             eccCCccc-ccceeEEeecCce
Confidence            98876443 6889999865554

>KOG3420|consensus

Probab=98.56  E-value=1.1e-07  Score=82.33  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=74.5

Q ss_pred             HHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .++..|-+-. ++.|++++|||||.|.++..++-.++..|+|+|+.+++++.+.+++...    .-++.++++|+.++..
T Consensus        35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~  110 (185)
T KOG3420|consen   35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLEL  110 (185)
T ss_pred             HHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhc
Confidence            4455555544 5899999999999999998877788899999999999999998876432    3467899999988776


Q ss_pred             cCCCceeEEEEccccccc
Q psy11730        356 VIHSKFDIILTSETIYSV  373 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~  373 (496)
                      . .+.||.++.++++-.-
T Consensus       111 ~-~g~fDtaviNppFGTk  127 (185)
T KOG3420|consen  111 K-GGIFDTAVINPPFGTK  127 (185)
T ss_pred             c-CCeEeeEEecCCCCcc
Confidence            5 4889999999987543

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.55  E-value=1.9e-07  Score=89.30  Aligned_cols=105  Identities=18%  Similarity=0.121  Sum_probs=70.6

Q ss_pred             ecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHH-hcCcccccccCCCCceEEEecc
Q psy11730        272 WECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIES-LTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~-a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      ...+..|...+.... ..+++.|||+|||||.++..+++.|+++|+|+|+++.|+.. ++.+. ........|++  ..+
T Consensus        57 sr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-~v~~~~~~ni~--~~~  133 (228)
T TIGR00478        57 SRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-RVKVLERTNIR--YVT  133 (228)
T ss_pred             hhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-CeeEeecCCcc--cCC
Confidence            455667777777654 46788999999999999999999999999999999988775 33322 11001122333  334


Q ss_pred             cCCccccCCCceeEEEEccccccccchHhHhh
Q psy11730        350 WGSLSAVIHSKFDIILTSETIYSVANYNKLLT  381 (496)
Q Consensus       350 ~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~  381 (496)
                      ++++... -..+|+++++..+ -+++...+++
T Consensus       134 ~~~~~~d-~~~~DvsfiS~~~-~l~~i~~~l~  163 (228)
T TIGR00478       134 PADIFPD-FATFDVSFISLIS-ILPELDLLLN  163 (228)
T ss_pred             HhHcCCC-ceeeeEEEeehHh-HHHHHHHHhC
Confidence            4444321 2478988887665 3566666665

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.55  E-value=2.7e-07  Score=86.68  Aligned_cols=102  Identities=14%  Similarity=0.207  Sum_probs=67.5

Q ss_pred             HHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730        281 FIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH  358 (496)
Q Consensus       281 ~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  358 (496)
                      .+...... ++.+|||+|||+|.+++.+++... .+|+++|+|++|++.++++....+   ..+++++.+|+.+......
T Consensus        31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~~~~~~  107 (196)
T PRK07402         31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPECLAQLA  107 (196)
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHHHhhCC
Confidence            34444443 578999999999999999887644 799999999999999887653322   3578999998865322112


Q ss_pred             CceeEEEEccccccccchHhHhhe-e-eecCCC
Q psy11730        359 SKFDIILTSETIYSVANYNKLLTV-W-CLFPTH  389 (496)
Q Consensus       359 ~~fD~Ii~~~~l~~~~~~~~~~~~-~-~l~p~~  389 (496)
                      ..+|.|+....    .+.+.+++. + .|.|++
T Consensus       108 ~~~d~v~~~~~----~~~~~~l~~~~~~LkpgG  136 (196)
T PRK07402        108 PAPDRVCIEGG----RPIKEILQAVWQYLKPGG  136 (196)
T ss_pred             CCCCEEEEECC----cCHHHHHHHHHHhcCCCe
Confidence            34677665322    233444444 1 455554

>PRK04266 fibrillarin; Provisional

Probab=98.54  E-value=4.6e-07  Score=86.90  Aligned_cols=96  Identities=17%  Similarity=0.090  Sum_probs=65.2

Q ss_pred             ceeeecchH-HHHHHHHh---CCCC-CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730        268 GYKIWECTF-DLLNFIKD---NVAV-DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLE  341 (496)
Q Consensus       268 ~~~~~~~~~-~l~~~l~~---~~~~-~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~  341 (496)
                      +|.+|.... .+...|..   ...+ ++.+|||+|||+|.++..++... ...|+|+|+++.|++.+.++...     ..
T Consensus        46 ~~~~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----~~  120 (226)
T PRK04266         46 EYREWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----RK  120 (226)
T ss_pred             EEEEECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----cC
Confidence            455554422 33333333   3443 47799999999999999998865 36899999999999876544321     25


Q ss_pred             ceEEEecccCCcc--ccCCCceeEEEEcc
Q psy11730        342 KCKFYHGDWGSLS--AVIHSKFDIILTSE  368 (496)
Q Consensus       342 ~v~~~~~d~~~~~--~~~~~~fD~Ii~~~  368 (496)
                      |+.++.+|..+..  ....+.||+|++..
T Consensus       121 nv~~i~~D~~~~~~~~~l~~~~D~i~~d~  149 (226)
T PRK04266        121 NIIPILADARKPERYAHVVEKVDVIYQDV  149 (226)
T ss_pred             CcEEEECCCCCcchhhhccccCCEEEECC
Confidence            7888999986521  11135699999753

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.52  E-value=1.1e-07  Score=105.79  Aligned_cols=82  Identities=13%  Similarity=0.135  Sum_probs=67.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++++|||||||+|.+++.+++.|+.+|+++|+|+.+++.++++...++ ....+++++++|+.+......++||+|++++
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            578999999999999999998888899999999999999987764443 2225899999998765432256899999998


Q ss_pred             ccc
Q psy11730        369 TIY  371 (496)
Q Consensus       369 ~l~  371 (496)
                      +..
T Consensus       617 P~f  619 (702)
T PRK11783        617 PTF  619 (702)
T ss_pred             CCC
Confidence            854

>KOG3010|consensus

Probab=98.52  E-value=2.8e-07  Score=86.68  Aligned_cols=102  Identities=13%  Similarity=0.084  Sum_probs=69.8

Q ss_pred             eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccc
Q psy11730        292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~  371 (496)
                      .++|+|||+|..++.++ ..+++|+|+|+|++|++.|++.....-  .....++...++.++... +++.|+|++..++|
T Consensus        36 ~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L~g~-e~SVDlI~~Aqa~H  111 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDLLGG-EESVDLITAAQAVH  111 (261)
T ss_pred             eEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCCccc--ccCCccccccccccccCC-CcceeeehhhhhHH
Confidence            89999999996666644 447899999999999999887642111  112233333445555443 68999999999999


Q ss_pred             cccchHhHhhe--eeecCCCCCcccEEEeecc
Q psy11730        372 SVANYNKLLTV--WCLFPTHTPKDLLKVTSAE  401 (496)
Q Consensus       372 ~~~~~~~~~~~--~~l~p~~~~~~~~~~~~~~  401 (496)
                      ++. .+.+++.  +.|.++|+   ++.+....
T Consensus       112 WFd-le~fy~~~~rvLRk~Gg---~iavW~Y~  139 (261)
T KOG3010|consen  112 WFD-LERFYKEAYRVLRKDGG---LIAVWNYN  139 (261)
T ss_pred             hhc-hHHHHHHHHHHcCCCCC---EEEEEEcc
Confidence            994 4555544  47777776   45554444

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.52  E-value=1.1e-07  Score=88.10  Aligned_cols=101  Identities=28%  Similarity=0.355  Sum_probs=70.0

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-  356 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-  356 (496)
                      +.++|... .+.+.+||||.||||.+++.++.+|+++|++||.++..+...+++....+  ...++.++.+|....... 
T Consensus        32 lFniL~~~-~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~d~~~~l~~~  108 (183)
T PF03602_consen   32 LFNILQPR-NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKGDAFKFLLKL  108 (183)
T ss_dssp             HHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHHHHH
T ss_pred             HHHHhccc-ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC--CCcceeeeccCHHHHHHhh
Confidence            45555544 36899999999999999999999999999999999999998887754433  233688899986544322 


Q ss_pred             --CCCceeEEEEccccccccchHhHhh
Q psy11730        357 --IHSKFDIILTSETIYSVANYNKLLT  381 (496)
Q Consensus       357 --~~~~fD~Ii~~~~l~~~~~~~~~~~  381 (496)
                        ....||+|++.+|+..-.....++.
T Consensus       109 ~~~~~~fDiIflDPPY~~~~~~~~~l~  135 (183)
T PF03602_consen  109 AKKGEKFDIIFLDPPYAKGLYYEELLE  135 (183)
T ss_dssp             HHCTS-EEEEEE--STTSCHHHHHHHH
T ss_pred             cccCCCceEEEECCCcccchHHHHHHH
Confidence              2579999999999877654344443

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.51  E-value=1.6e-07  Score=87.77  Aligned_cols=91  Identities=19%  Similarity=0.248  Sum_probs=68.1

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--C-CceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--H-SKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~-~~fD~I  364 (496)
                      +.+.+|||++||+|.+++.++.+|+.+|+++|.++.+++.++++....+  ...+++++.+|+.+.....  . ..||+|
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~--~~~~~~~~~~D~~~~l~~~~~~~~~~dvv  125 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK--SGEQAEVVRNSALRALKFLAKKPTFDNVI  125 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC--CcccEEEEehhHHHHHHHhhccCCCceEE
Confidence            4688999999999999999999999999999999999998876653332  2347899999986542211  2 247888


Q ss_pred             EEccccccccchHhHhh
Q psy11730        365 LTSETIYSVANYNKLLT  381 (496)
Q Consensus       365 i~~~~l~~~~~~~~~~~  381 (496)
                      +..+++.. ...+.+++
T Consensus       126 ~~DPPy~~-~~~~~~l~  141 (189)
T TIGR00095       126 YLDPPFFN-GALQALLE  141 (189)
T ss_pred             EECcCCCC-CcHHHHHH
Confidence            88888754 33444443

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.51  E-value=3.4e-07  Score=92.19  Aligned_cols=92  Identities=18%  Similarity=0.237  Sum_probs=68.3

Q ss_pred             HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      +...+.+...+ ++.+|||||||+|.++..+++...  .+|+++|.++++++.|+++....   ...++.++.+|..+..
T Consensus        68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~---g~~nV~~i~gD~~~~~  144 (322)
T PRK13943         68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL---GIENVIFVCGDGYYGV  144 (322)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEeCChhhcc
Confidence            33344444433 578999999999999999988654  47999999999999988764332   2457899999976654


Q ss_pred             ccCCCceeEEEEccccccc
Q psy11730        355 AVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .. ...||+|++...+..+
T Consensus       145 ~~-~~~fD~Ii~~~g~~~i  162 (322)
T PRK13943        145 PE-FAPYDVIFVTVGVDEV  162 (322)
T ss_pred             cc-cCCccEEEECCchHHh
Confidence            33 3679999998766555

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.51  E-value=2.6e-07  Score=92.10  Aligned_cols=93  Identities=18%  Similarity=0.131  Sum_probs=72.1

Q ss_pred             HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..+++.|.+...+ ++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++....  ....+++++++|+.+..
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~--~~~~~v~ii~~Dal~~~   98 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNS--PLASKLEVIEGDALKTE   98 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhc--CCCCcEEEEECCHhhhc
Confidence            3456666665554 57899999999999999988875 57999999999999988664321  12468999999998765


Q ss_pred             ccCCCceeEEEEcccccccc
Q psy11730        355 AVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      .   ..||+|+++.+++-..
T Consensus        99 ~---~~~d~VvaNlPY~Ist  115 (294)
T PTZ00338         99 F---PYFDVCVANVPYQISS  115 (294)
T ss_pred             c---cccCEEEecCCcccCc
Confidence            3   4689999998887553

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.51  E-value=1.4e-07  Score=97.77  Aligned_cols=83  Identities=24%  Similarity=0.263  Sum_probs=66.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc---CCCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV---IHSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~Ii  365 (496)
                      ++++|||+|||+|.+++.++..++.+|+++|+|+.+++.|+++...++ ....+++++.+|+.+....   ..++||+|+
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            578999999999999998777777899999999999999887654432 2224799999998775421   135899999


Q ss_pred             Ecccccc
Q psy11730        366 TSETIYS  372 (496)
Q Consensus       366 ~~~~l~~  372 (496)
                      ++++...
T Consensus       299 lDPP~f~  305 (396)
T PRK15128        299 MDPPKFV  305 (396)
T ss_pred             ECCCCCC
Confidence            9999643

>KOG3191|consensus

Probab=98.50  E-value=1.8e-07  Score=84.10  Aligned_cols=137  Identities=20%  Similarity=0.187  Sum_probs=96.4

Q ss_pred             ccccCceeeecchHHHHHHHHhCCC----CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccc
Q psy11730        263 NVYEGGYKIWECTFDLLNFIKDNVA----VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMN  336 (496)
Q Consensus       263 ~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~  336 (496)
                      .+|++    -++++.|++.|+....    ...+.+||||||+|..+.+|++.-.  ..+.++|+|+.+++...+.+..  
T Consensus        17 dVYEP----aEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~--   90 (209)
T KOG3191|consen   17 DVYEP----AEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC--   90 (209)
T ss_pred             hccCc----cchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh--
Confidence            46666    8899999998887642    3367899999999999999987433  6789999999999875544322  


Q ss_pred             cCCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhheeeecCCCCCcccEEEeeccCCcccccccchhhHh
Q psy11730        337 TDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSII  416 (496)
Q Consensus       337 ~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (496)
                        +..++..++.|+.+-..  .++.|+++.++++.-.++.+--..             --...+.|+..+++.++.+.+.
T Consensus        91 --n~~~~~~V~tdl~~~l~--~~~VDvLvfNPPYVpt~~~~i~~~-------------~i~~a~aGG~~Gr~v~d~ll~~  153 (209)
T KOG3191|consen   91 --NRVHIDVVRTDLLSGLR--NESVDVLVFNPPYVPTSDEEIGDE-------------GIASAWAGGKDGREVTDRLLPQ  153 (209)
T ss_pred             --cCCccceeehhHHhhhc--cCCccEEEECCCcCcCCcccchhH-------------HHHHHHhcCcchHHHHHHHHhh
Confidence              24557888888776554  489999999999766544322111             0112345667777777777666


Q ss_pred             cCCCCC
Q psy11730        417 YPRTQL  422 (496)
Q Consensus       417 ~~~~~~  422 (496)
                      .+...+
T Consensus       154 v~~iLS  159 (209)
T KOG3191|consen  154 VPDILS  159 (209)
T ss_pred             hhhhcC
Confidence            665443

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.46  E-value=3.7e-07  Score=91.62  Aligned_cols=86  Identities=15%  Similarity=0.086  Sum_probs=60.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe-cccCCccc---cCCCceeE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH-GDWGSLSA---VIHSKFDI  363 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~-~d~~~~~~---~~~~~fD~  363 (496)
                      .+.+|||||||+|.+...++.. ...+++|+|+++.+++.|+++...+ .....++.+.. .+...+..   ...+.||+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-p~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-PGLNGAIRLRLQKDSKAIFKGIIHKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-cCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence            3569999999999887777654 4478999999999999999765433 12345677754 33322221   12568999


Q ss_pred             EEEccccccccc
Q psy11730        364 ILTSETIYSVAN  375 (496)
Q Consensus       364 Ii~~~~l~~~~~  375 (496)
                      |+|+++++.-..
T Consensus       193 ivcNPPf~~s~~  204 (321)
T PRK11727        193 TLCNPPFHASAA  204 (321)
T ss_pred             EEeCCCCcCcch
Confidence            999999876543

>KOG2904|consensus

Probab=98.46  E-value=5.3e-07  Score=86.10  Aligned_cols=93  Identities=16%  Similarity=0.223  Sum_probs=69.7

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC----ccccCCCce
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS----LSAVIHSKF  361 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~f  361 (496)
                      ...+..+||+|||+|.+++.++.. +...|+|||.|+.++..|.++.....  ....+.+++.+++.    ....+.+.+
T Consensus       146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d~~~~~~l~~~~~  223 (328)
T KOG2904|consen  146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESDASDEHPLLEGKI  223 (328)
T ss_pred             hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecccccccccccccccCce
Confidence            356779999999999999999764 44889999999999999888765443  45567777554443    222235899


Q ss_pred             eEEEEccccccccchHhHhh
Q psy11730        362 DIILTSETIYSVANYNKLLT  381 (496)
Q Consensus       362 D~Ii~~~~l~~~~~~~~~~~  381 (496)
                      |+++||+++-.-.|.+.+-.
T Consensus       224 dllvsNPPYI~~dD~~~l~~  243 (328)
T KOG2904|consen  224 DLLVSNPPYIRKDDNRQLKP  243 (328)
T ss_pred             eEEecCCCcccccchhhcCc
Confidence            99999999988777544433

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.46  E-value=3.8e-07  Score=92.77  Aligned_cols=91  Identities=21%  Similarity=0.161  Sum_probs=68.8

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .++..+.+.... ++..|||+|||+|.+++.++..+ .+|+|+|+++.|+..++.+....+   ..++.+..+|+.+++.
T Consensus       169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g---~~~i~~~~~D~~~l~~  244 (329)
T TIGR01177       169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYG---IEDFFVKRGDATKLPL  244 (329)
T ss_pred             HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhC---CCCCeEEecchhcCCc
Confidence            344444443333 47799999999999999866654 689999999999998877653332   3448899999998765


Q ss_pred             cCCCceeEEEEcccccc
Q psy11730        356 VIHSKFDIILTSETIYS  372 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~  372 (496)
                      . .+.||+|++++|+..
T Consensus       245 ~-~~~~D~Iv~dPPyg~  260 (329)
T TIGR01177       245 S-SESVDAIATDPPYGR  260 (329)
T ss_pred             c-cCCCCEEEECCCCcC
Confidence            4 578999999988643

This family is found exclusively in the Archaea.

>PRK04457 spermidine synthase; Provisional

Probab=98.45  E-value=7e-07  Score=87.76  Aligned_cols=77  Identities=22%  Similarity=0.236  Sum_probs=61.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .+++|||||||+|.++..+++..+ .+|+++|+++++++.|++.....  ....+++++.+|..+......++||+|+++
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~--~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP--ENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC--CCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            467999999999999999887655 78999999999999998764221  124689999999876543334689999985

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=7.4e-07  Score=83.08  Aligned_cols=98  Identities=15%  Similarity=0.092  Sum_probs=74.2

Q ss_pred             ecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      +...-.+...+.+.. ..++.+|||||||+|+.+-.|++... +|+.+|..++..+.|+++....   ...||.+.++|.
T Consensus        54 tis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~l---g~~nV~v~~gDG  129 (209)
T COG2518          54 TISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETL---GYENVTVRHGDG  129 (209)
T ss_pred             eecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHc---CCCceEEEECCc
Confidence            334444444444444 44588999999999999999998776 8999999999999999876443   356799999997


Q ss_pred             CCccccCCCceeEEEEcccccccc
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      ..-... ...||.|+.......++
T Consensus       130 ~~G~~~-~aPyD~I~Vtaaa~~vP  152 (209)
T COG2518         130 SKGWPE-EAPYDRIIVTAAAPEVP  152 (209)
T ss_pred             ccCCCC-CCCcCEEEEeeccCCCC
Confidence            654332 57899999988776653

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=3.5e-07  Score=95.48  Aligned_cols=89  Identities=19%  Similarity=0.275  Sum_probs=71.8

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .|.++..+.... ++.+|||+.||.|.+++.|| ....+|+|+|+++++++.|++++..++   ..|++|..++.+++..
T Consensus       280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~~~~  355 (432)
T COG2265         280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEEFTP  355 (432)
T ss_pred             HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHHhh
Confidence            456666666655 45789999999999999988 445789999999999999988765544   6679999999998876


Q ss_pred             cCC--CceeEEEEccc
Q psy11730        356 VIH--SKFDIILTSET  369 (496)
Q Consensus       356 ~~~--~~fD~Ii~~~~  369 (496)
                      ...  ..+|+|+.+++
T Consensus       356 ~~~~~~~~d~VvvDPP  371 (432)
T COG2265         356 AWWEGYKPDVVVVDPP  371 (432)
T ss_pred             hccccCCCCEEEECCC
Confidence            532  47899999887

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.44  E-value=3.7e-07  Score=96.32  Aligned_cols=90  Identities=17%  Similarity=0.194  Sum_probs=68.3

Q ss_pred             HHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .|.+.+.+...+. +.+|||+|||+|.+++.+++.. .+|+|+|+|+.|++.|+++...++   ..+++|+.+|+.+...
T Consensus       279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l~  354 (431)
T TIGR00479       279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVLP  354 (431)
T ss_pred             HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHHH
Confidence            3455555555444 5799999999999999988764 689999999999999987653332   4689999999876422


Q ss_pred             c---CCCceeEEEEcccc
Q psy11730        356 V---IHSKFDIILTSETI  370 (496)
Q Consensus       356 ~---~~~~fD~Ii~~~~l  370 (496)
                      .   ....||+|+++++-
T Consensus       355 ~~~~~~~~~D~vi~dPPr  372 (431)
T TIGR00479       355 KQPWAGQIPDVLLLDPPR  372 (431)
T ss_pred             HHHhcCCCCCEEEECcCC
Confidence            1   13579999998884

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG2920|consensus

Probab=98.43  E-value=2.4e-07  Score=89.53  Aligned_cols=127  Identities=43%  Similarity=0.803  Sum_probs=93.8

Q ss_pred             cceeecccccCCCccccCceeeecchHHHHHHHHhCC----CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHH
Q psy11730        250 ETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV----AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVI  325 (496)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i  325 (496)
                      +....+...++...+|++|+++|+++..|+..+.+.+    ...+++|||+|||.|..++.+...+...+.+.|+|.+.+
T Consensus        73 ~~i~~~~~sDl~p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen   73 EEIILLNHSDLVPGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL  152 (282)
T ss_pred             chhhcccccccCCceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence            3334557888999999999999999999999999664    367999999999999999999999989999999999998


Q ss_pred             HHhcCcccccccC-------CCCceEEEec---ccCCccccCCC--ceeEEEEccccccccchHhH
Q psy11730        326 ESLTLPNILMNTD-------NLEKCKFYHG---DWGSLSAVIHS--KFDIILTSETIYSVANYNKL  379 (496)
Q Consensus       326 ~~a~~~~~~~~~~-------~~~~v~~~~~---d~~~~~~~~~~--~fD~Ii~~~~l~~~~~~~~~  379 (496)
                      ..-...+...+..       ...-..+.+.   |+.   ....+  .||+|.++.++|...+.+.+
T Consensus       153 ~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~---~~~t~~~~ydlIlsSetiy~~~~~~~~  215 (282)
T KOG2920|consen  153 RLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGV---FNHTERTHYDLILSSETIYSIDSLAVL  215 (282)
T ss_pred             eeecccceecchhhhhhhhhcccceeccccccccch---hhhccccchhhhhhhhhhhCcchhhhh
Confidence            5444433332210       0011122222   331   11123  89999999999999888777

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.43  E-value=5.7e-07  Score=85.12  Aligned_cols=99  Identities=15%  Similarity=0.194  Sum_probs=69.3

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      .+...+.+...+ ++.+|||||||+|+.+-.++....  ..|+++|..+.+++.|+++....   ...|+.+.++|....
T Consensus        59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~---~~~nv~~~~gdg~~g  135 (209)
T PF01135_consen   59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL---GIDNVEVVVGDGSEG  135 (209)
T ss_dssp             HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH---TTHSEEEEES-GGGT
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh---ccCceeEEEcchhhc
Confidence            343444444434 588999999999999999998644  46999999999999998775433   356999999997654


Q ss_pred             cccCCCceeEEEEccccccccchHhHhh
Q psy11730        354 SAVIHSKFDIILTSETIYSVANYNKLLT  381 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~~~~~~~~~  381 (496)
                      ... ...||.|++......+  ++.+++
T Consensus       136 ~~~-~apfD~I~v~~a~~~i--p~~l~~  160 (209)
T PF01135_consen  136 WPE-EAPFDRIIVTAAVPEI--PEALLE  160 (209)
T ss_dssp             TGG-G-SEEEEEESSBBSS----HHHHH
T ss_pred             ccc-CCCcCEEEEeeccchH--HHHHHH
Confidence            332 5789999999888654  344555

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.42  E-value=7.6e-07  Score=81.27  Aligned_cols=96  Identities=18%  Similarity=0.267  Sum_probs=74.1

Q ss_pred             CCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEE
Q psy11730        286 VAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       286 ~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      ...++..++|||||||..++.++..++ .+|++||-++++++..+++....   ..+|+.++.+++.+..... ..||.|
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f---g~~n~~vv~g~Ap~~L~~~-~~~dai  106 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF---GVDNLEVVEGDAPEALPDL-PSPDAI  106 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh---CCCcEEEEeccchHhhcCC-CCCCEE
Confidence            345688999999999999999998777 79999999999999888765443   3889999999988776532 389999


Q ss_pred             EEccccccccchHhHhhe-e-eecCCC
Q psy11730        365 LTSETIYSVANYNKLLTV-W-CLFPTH  389 (496)
Q Consensus       365 i~~~~l~~~~~~~~~~~~-~-~l~p~~  389 (496)
                      +....    .+.+.+++. | .|.|++
T Consensus       107 FIGGg----~~i~~ile~~~~~l~~gg  129 (187)
T COG2242         107 FIGGG----GNIEEILEAAWERLKPGG  129 (187)
T ss_pred             EECCC----CCHHHHHHHHHHHcCcCC
Confidence            99887    334444443 2 344544

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.42  E-value=3.6e-07  Score=94.01  Aligned_cols=90  Identities=13%  Similarity=0.191  Sum_probs=67.1

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .|.+++.+.....+.+|||++||+|.+++.+++. ..+|+|+|.++.+++.++++...++   ..+++|+.+|+.+....
T Consensus       194 ~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~---~~~v~~~~~d~~~~l~~  269 (362)
T PRK05031        194 KMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANG---IDNVQIIRMSAEEFTQA  269 (362)
T ss_pred             HHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEECCHHHHHHH
Confidence            4555555544333467999999999999987665 5699999999999999887654332   45899999998774321


Q ss_pred             C---------------CCceeEEEEcccc
Q psy11730        357 I---------------HSKFDIILTSETI  370 (496)
Q Consensus       357 ~---------------~~~fD~Ii~~~~l  370 (496)
                      .               ...||+|+..++-
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR  298 (362)
T PRK05031        270 MNGVREFNRLKGIDLKSYNFSTIFVDPPR  298 (362)
T ss_pred             HhhcccccccccccccCCCCCEEEECCCC
Confidence            1               1258999999994

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.40  E-value=1e-06  Score=88.73  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=75.5

Q ss_pred             HHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        280 NFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       280 ~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      +.+.+...++ +.+|||||||+|.++..+++..+ .+++++|. +.+++.++++....+  ...+++++.+|+.+.+.  
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~~--  213 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESY--  213 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCCC--
Confidence            3344444444 57999999999999999999876 68999997 789998876643322  34679999999876432  


Q ss_pred             CCceeEEEEccccccccch--HhHhhee--eecCCC
Q psy11730        358 HSKFDIILTSETIYSVANY--NKLLTVW--CLFPTH  389 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~--~~~~~~~--~l~p~~  389 (496)
                       ..+|+|++..++|++.+.  ..++++.  .|.|++
T Consensus       214 -~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG  248 (306)
T TIGR02716       214 -PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGG  248 (306)
T ss_pred             -CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCC
Confidence             236999999999888543  3566552  556654

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK00811 spermidine synthase; Provisional

Probab=98.39  E-value=7.2e-07  Score=88.71  Aligned_cols=81  Identities=17%  Similarity=0.178  Sum_probs=64.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCccccccc--CCCCceEEEecccCCccccCCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNT--DNLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      .++++||+||||+|..+..+++. +..+|+++|+++++++.|++.....+.  ...++++++.+|.........++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            35789999999999999998886 458999999999999999886543322  136789999999877554335789999


Q ss_pred             EEcc
Q psy11730        365 LTSE  368 (496)
Q Consensus       365 i~~~  368 (496)
                      ++..
T Consensus       155 i~D~  158 (283)
T PRK00811        155 IVDS  158 (283)
T ss_pred             EECC
Confidence            9964

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.39  E-value=5e-07  Score=92.58  Aligned_cols=89  Identities=12%  Similarity=0.169  Sum_probs=66.5

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .|++.+.+.....+.+|||+|||+|.+++.+++.. .+|+|+|++++|++.++++...++   ..+++|+.+|+.+....
T Consensus       185 ~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~---~~~v~~~~~d~~~~~~~  260 (353)
T TIGR02143       185 KMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANN---IDNVQIIRMSAEEFTQA  260 (353)
T ss_pred             HHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEEcCHHHHHHH
Confidence            45555555544344579999999999999877664 689999999999999987654332   45799999998875431


Q ss_pred             C---------C------CceeEEEEccc
Q psy11730        357 I---------H------SKFDIILTSET  369 (496)
Q Consensus       357 ~---------~------~~fD~Ii~~~~  369 (496)
                      .         .      ..||+|+.+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPP  288 (353)
T TIGR02143       261 MNGVREFRRLKGIDLKSYNCSTIFVDPP  288 (353)
T ss_pred             HhhccccccccccccccCCCCEEEECCC
Confidence            0         1      13899999998

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.38  E-value=1.7e-06  Score=91.01  Aligned_cols=147  Identities=16%  Similarity=0.156  Sum_probs=95.4

Q ss_pred             ccCceeeecchH-HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730        265 YEGGYKIWECTF-DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLE  341 (496)
Q Consensus       265 ~~~~~~~~~~~~-~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~  341 (496)
                      +..|+-+.++.. .++..+..  ..+|.+|||+|||+|..+..++...  ..+|+++|+|+.+++.++++....+   ..
T Consensus       214 ~~~G~~~~Qd~~s~~~~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g---~~  288 (431)
T PRK14903        214 IKDGLATVQGESSQIVPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK---LS  288 (431)
T ss_pred             HHCCeEEEECHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC---CC
Confidence            445555555533 23332321  2357899999999999999988753  4789999999999999987764433   45


Q ss_pred             ceEEEecccCCccccCCCceeEEEEccccccccc----h------------------HhHhhe-e-eecCCCCCcccEEE
Q psy11730        342 KCKFYHGDWGSLSAVIHSKFDIILTSETIYSVAN----Y------------------NKLLTV-W-CLFPTHTPKDLLKV  397 (496)
Q Consensus       342 ~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~----~------------------~~~~~~-~-~l~p~~~~~~~~~~  397 (496)
                      ++.+..+|+.+++....++||.|+++.+......    +                  ..++.. + .+.|+|.   +++.
T Consensus       289 ~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~---LvYs  365 (431)
T PRK14903        289 SIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGI---LLYS  365 (431)
T ss_pred             eEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE---EEEE
Confidence            6899999988765333578999999776643321    1                  112222 2 4556654   5555


Q ss_pred             eeccCCcccccccchhhHhcCC
Q psy11730        398 TSAEGGKQRDEAITWFSIIYPR  419 (496)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~  419 (496)
                      .-.....+....+.+|...++.
T Consensus       366 TCs~~~eEne~vv~~fl~~~~~  387 (431)
T PRK14903        366 TCTVTKEENTEVVKRFVYEQKD  387 (431)
T ss_pred             ECCCChhhCHHHHHHHHHhCCC
Confidence            5544445566677777655554

>PRK04148 hypothetical protein; Provisional

Probab=98.38  E-value=1.3e-06  Score=76.11  Aligned_cols=93  Identities=15%  Similarity=0.123  Sum_probs=69.2

Q ss_pred             HHHHHHhCCC-CCCCeEEEecCcCCH-HHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        278 LLNFIKDNVA-VDKLSVLDVGCGAGL-LGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       278 l~~~l~~~~~-~~~~~VLDlGcGtG~-~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      ++++|.++.. .++.+|||||||+|. ++..|++.| ..|+|+|+++..++.++.+          .+.++.+|+.+...
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~   72 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL   72 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence            5666766553 356899999999996 888888776 5899999999999988754          35778899887766


Q ss_pred             cCCCceeEEEE-ccccccccchHhHhh
Q psy11730        356 VIHSKFDIILT-SETIYSVANYNKLLT  381 (496)
Q Consensus       356 ~~~~~fD~Ii~-~~~l~~~~~~~~~~~  381 (496)
                      ..-..+|+|.+ .++-+..+..-.+-+
T Consensus        73 ~~y~~a~liysirpp~el~~~~~~la~   99 (134)
T PRK04148         73 EIYKNAKLIYSIRPPRDLQPFILELAK   99 (134)
T ss_pred             HHHhcCCEEEEeCCCHHHHHHHHHHHH
Confidence            55678999998 444444444444444

>TIGR03438 probable methyltransferase

Probab=98.36  E-value=9.3e-07  Score=88.75  Aligned_cols=99  Identities=11%  Similarity=-0.036  Sum_probs=67.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc-ccCC---Ccee
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS-AVIH---SKFD  362 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~---~~fD  362 (496)
                      ++.+|||+|||+|..+..+++..  ..+|+|+|+|++|++.++++.....  ...++.++++|+.+.. ....   ....
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~~~~~~~~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPLALPPEPAAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchhhhhcccccCCeE
Confidence            46789999999999999998876  4689999999999999887643211  2345777899987632 2111   1344


Q ss_pred             EEEEccccccccc--hHhHhhee--eecCCC
Q psy11730        363 IILTSETIYSVAN--YNKLLTVW--CLFPTH  389 (496)
Q Consensus       363 ~Ii~~~~l~~~~~--~~~~~~~~--~l~p~~  389 (496)
                      ++++..++++++.  ...+++.+  .|.|++
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG  171 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGG  171 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCC
Confidence            5556677887753  33455542  455654

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PTZ00146 fibrillarin; Provisional

Probab=98.36  E-value=2.5e-06  Score=83.97  Aligned_cols=116  Identities=14%  Similarity=0.053  Sum_probs=74.5

Q ss_pred             ceeeecchH-HHHHHHHhCC---CC-CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCC
Q psy11730        268 GYKIWECTF-DLLNFIKDNV---AV-DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNL  340 (496)
Q Consensus       268 ~~~~~~~~~-~l~~~l~~~~---~~-~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~  340 (496)
                      .|++|+--. .|+..|..-+   .+ ++.+|||||||+|.++..++...  ...|+++|+++.|.+.+...+.     ..
T Consensus       106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-----~r  180 (293)
T PTZ00146        106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-----KR  180 (293)
T ss_pred             eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-----hc
Confidence            488898744 4665564433   23 47799999999999999999865  3689999999875533322221     12


Q ss_pred             CceEEEecccCCccc--cCCCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730        341 EKCKFYHGDWGSLSA--VIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       341 ~~v~~~~~d~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      .||.++.+|+.....  ...+.||+|++..+  ...+...++.+  ..|.|++.
T Consensus       181 ~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~  232 (293)
T PTZ00146        181 PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGH  232 (293)
T ss_pred             CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCE
Confidence            478889999764211  11357999999774  22232233322  35667664

>KOG1356|consensus

Probab=98.36  E-value=1.3e-07  Score=101.79  Aligned_cols=55  Identities=31%  Similarity=0.439  Sum_probs=50.9

Q ss_pred             CCCchhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCCCChhhHHHHhhcCC
Q psy11730        428 EWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGR  482 (496)
Q Consensus       428 ~~~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~~~~~~~~~~~~~~  482 (496)
                      +..|+.++|..||++|||+|.-|||.|+-.||.|+..|+|+.|..--++-|-..|
T Consensus       795 GVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR  849 (889)
T KOG1356|consen  795 GVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFR  849 (889)
T ss_pred             CCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHh
Confidence            5688999999999999999999999999999999999999999998888886655

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.36  E-value=1.6e-06  Score=84.85  Aligned_cols=89  Identities=17%  Similarity=0.158  Sum_probs=68.8

Q ss_pred             hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ...+++.+.+... .++.+|||||||+|.++..+++.+. .|+++|+++.|++.++.+..     ...+++++++|+.+.
T Consensus        14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~-----~~~~v~v~~~D~~~~   87 (253)
T TIGR00755        14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLS-----LYERLEVIEGDALKV   87 (253)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhC-----cCCcEEEEECchhcC
Confidence            3345556665554 3578999999999999999998875 69999999999998875431     146899999999887


Q ss_pred             cccCCCcee---EEEEcccccc
Q psy11730        354 SAVIHSKFD---IILTSETIYS  372 (496)
Q Consensus       354 ~~~~~~~fD---~Ii~~~~l~~  372 (496)
                      +..   .||   +|+++.+++.
T Consensus        88 ~~~---~~d~~~~vvsNlPy~i  106 (253)
T TIGR00755        88 DLP---DFPKQLKVVSNLPYNI  106 (253)
T ss_pred             Chh---HcCCcceEEEcCChhh
Confidence            642   466   8999988653

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.35  E-value=1e-06  Score=86.82  Aligned_cols=126  Identities=14%  Similarity=0.115  Sum_probs=86.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|..+..+++..  ...|+++|+++.+++.++++....+   ..++.++..|...+... .+.||+|+
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~-~~~fD~Vl  145 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG---VLNVAVTNFDGRVFGAA-VPKFDAIL  145 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEecCCHHHhhhh-ccCCCEEE
Confidence            357899999999999999988754  2589999999999999887664432   45789999998765433 45699999


Q ss_pred             Ecccccccc----c-----------h-------HhHhhe-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcCCC
Q psy11730        366 TSETIYSVA----N-----------Y-------NKLLTV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRT  420 (496)
Q Consensus       366 ~~~~l~~~~----~-----------~-------~~~~~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (496)
                      ++.+..-..    +           .       ..+++. + .+.|+|.   ++|..-.....+....+.+|...++..
T Consensus       146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~---lvYstcs~~~~Ene~vv~~~l~~~~~~  221 (264)
T TIGR00446       146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGV---LVYSTCSLEPEENEAVVDYLLEKRPDV  221 (264)
T ss_pred             EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE---EEEEeCCCChHHHHHHHHHHHHhCCCc
Confidence            877654321    1           1       112322 2 4556553   566655555555677888887776653

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.35  E-value=1.2e-06  Score=92.79  Aligned_cols=80  Identities=16%  Similarity=0.052  Sum_probs=63.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ++.+|||+|||+|..++.+++..  ..+|+|+|+++.+++.++++....+   ..+++++.+|+.++.....+.||+|++
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~~~~~fD~Vl~  326 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG---LTNIETKALDARKVHEKFAEKFDKILV  326 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCCcccccchhcccCCEEEE
Confidence            57899999999999999998763  4799999999999999887654332   346999999988764322478999999


Q ss_pred             ccccc
Q psy11730        367 SETIY  371 (496)
Q Consensus       367 ~~~l~  371 (496)
                      +.+..
T Consensus       327 D~Pcs  331 (444)
T PRK14902        327 DAPCS  331 (444)
T ss_pred             cCCCC
Confidence            87643

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.31  E-value=1.3e-06  Score=79.71  Aligned_cols=102  Identities=27%  Similarity=0.426  Sum_probs=85.1

Q ss_pred             ecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      |.....+++++..+.. +.+++|||+|+|+|.-++..++.|++.|++.|+.+......+.+. ..|   ..++.|.+.|.
T Consensus        61 WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa-~an---gv~i~~~~~d~  136 (218)
T COG3897          61 WAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNA-AAN---GVSILFTHADL  136 (218)
T ss_pred             HhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcch-hhc---cceeEEeeccc
Confidence            9999999999999875 679999999999999999999999999999999987777655443 222   46778887775


Q ss_pred             CCccccCCCceeEEEEccccccccchHhHhh
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVANYNKLLT  381 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~  381 (496)
                      -. .   +..||+|+..+++|.-+....++.
T Consensus       137 ~g-~---~~~~Dl~LagDlfy~~~~a~~l~~  163 (218)
T COG3897         137 IG-S---PPAFDLLLAGDLFYNHTEADRLIP  163 (218)
T ss_pred             cC-C---CcceeEEEeeceecCchHHHHHHH
Confidence            54 2   678999999999998877777765

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.31  E-value=1.4e-06  Score=79.86  Aligned_cols=82  Identities=22%  Similarity=0.286  Sum_probs=68.8

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC--ceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS--KFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~fD~Ii  365 (496)
                      +.|.+|||+.+|||.+++.++.+|+..++.||.+...+..++++...  .+...++.++.+|..........  .||+|+
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~--l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf  119 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA--LGLEGEARVLRNDALRALKQLGTREPFDLVF  119 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH--hCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence            68999999999999999999999999999999999999988876432  23457889999998855433344  499999


Q ss_pred             Eccccc
Q psy11730        366 TSETIY  371 (496)
Q Consensus       366 ~~~~l~  371 (496)
                      ..+|+.
T Consensus       120 lDPPy~  125 (187)
T COG0742         120 LDPPYA  125 (187)
T ss_pred             eCCCCc
Confidence            999998

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.31  E-value=1.2e-06  Score=89.87  Aligned_cols=89  Identities=21%  Similarity=0.307  Sum_probs=60.7

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .|.+++.+.....+..|||+.||+|.+++.||... ++|+|||.++.+++.|++++..++   ..|++|+.++.+++...
T Consensus       184 ~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~---i~n~~f~~~~~~~~~~~  259 (352)
T PF05958_consen  184 KLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNG---IDNVEFIRGDAEDFAKA  259 (352)
T ss_dssp             HHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHHCCCH
T ss_pred             HHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcC---CCcceEEEeeccchhHH
Confidence            56677767666665589999999999999976655 589999999999999988765443   68999999877654321


Q ss_pred             C---------------CCceeEEEEccc
Q psy11730        357 I---------------HSKFDIILTSET  369 (496)
Q Consensus       357 ~---------------~~~fD~Ii~~~~  369 (496)
                      .               ...+|+|+..+|
T Consensus       260 ~~~~r~~~~~~~~~~~~~~~d~vilDPP  287 (352)
T PF05958_consen  260 LAKAREFNRLKGIDLKSFKFDAVILDPP  287 (352)
T ss_dssp             HCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred             HHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence            0               126899998776

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.30  E-value=1.8e-06  Score=91.36  Aligned_cols=124  Identities=18%  Similarity=0.140  Sum_probs=84.2

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|..+..+++..  ..+|+|+|+|+.+++.++++....+   ..+++++.+|+.++..  .++||+|+
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~v~~~~~Da~~~~~--~~~fD~Vl  323 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG---ITIIETIEGDARSFSP--EEQPDAIL  323 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC---CCeEEEEeCccccccc--CCCCCEEE
Confidence            457899999999999999887643  3689999999999999887764433   3579999999887652  56899999


Q ss_pred             Eccccccc---------------cch-------HhHhhe--eeecCCCCCcccEEEeeccCCcccccccchhhHhcCC
Q psy11730        366 TSETIYSV---------------ANY-------NKLLTV--WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPR  419 (496)
Q Consensus       366 ~~~~l~~~---------------~~~-------~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (496)
                      +..+..-.               .+.       ..++..  ..+.|+|.   +++..-.....+....+.+|...++.
T Consensus       324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~---lvystcs~~~~Ene~~v~~~l~~~~~  398 (445)
T PRK14904        324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV---LVYATCSIEPEENELQIEAFLQRHPE  398 (445)
T ss_pred             EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE---EEEEeCCCChhhHHHHHHHHHHhCCC
Confidence            86543111               011       123333  25566664   55554444444456667777776654

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.29  E-value=3.8e-06  Score=80.20  Aligned_cols=99  Identities=17%  Similarity=0.129  Sum_probs=74.9

Q ss_pred             hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccc---------ccCCCCceEE
Q psy11730        275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILM---------NTDNLEKCKF  345 (496)
Q Consensus       275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~---------~~~~~~~v~~  345 (496)
                      .-.|.+++......++.+||+.|||.|..+.+||..|.. |+|+|+|+.+++.+.+++...         ......++++
T Consensus        29 np~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~  107 (226)
T PRK13256         29 NEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEI  107 (226)
T ss_pred             CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEE
Confidence            445666666544345789999999999999999999985 999999999999975532110         0112458999


Q ss_pred             EecccCCccc--cCCCceeEEEEcccccccc
Q psy11730        346 YHGDWGSLSA--VIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       346 ~~~d~~~~~~--~~~~~fD~Ii~~~~l~~~~  374 (496)
                      +++|+.++..  ...+.||+|+-..++..++
T Consensus       108 ~~gD~f~l~~~~~~~~~fD~VyDra~~~Alp  138 (226)
T PRK13256        108 YVADIFNLPKIANNLPVFDIWYDRGAYIALP  138 (226)
T ss_pred             EEccCcCCCccccccCCcCeeeeehhHhcCC
Confidence            9999998864  2236899999988888883

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.28  E-value=2.7e-06  Score=89.66  Aligned_cols=80  Identities=20%  Similarity=0.088  Sum_probs=63.4

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-CCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-IHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|..++.+++.+. .+|+|+|+|+.+++.++++....+    .+++++.+|+.++... ..++||.|+
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~~~~~~~~~fD~Vl  318 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDPAQWWDGQPFDRIL  318 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccchhhcccCCCCEEE
Confidence            3688999999999999999998765 699999999999999887664432    1368899998765431 246799999


Q ss_pred             Eccccc
Q psy11730        366 TSETIY  371 (496)
Q Consensus       366 ~~~~l~  371 (496)
                      ++.+..
T Consensus       319 ~D~Pcs  324 (427)
T PRK10901        319 LDAPCS  324 (427)
T ss_pred             ECCCCC
Confidence            877654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.23  E-value=3.9e-06  Score=78.26  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=58.3

Q ss_pred             hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      .+.+.+..+.... .++.+|||+|||+|.++..++...  ..+|+|+|+|+.+    .          ..++.++.+|+.
T Consensus        17 ~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~----------~~~i~~~~~d~~   82 (188)
T TIGR00438        17 SFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P----------IENVDFIRGDFT   82 (188)
T ss_pred             HHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c----------CCCceEEEeeCC
Confidence            3456666665544 458899999999999999988764  3589999999865    1          235778888876


Q ss_pred             Ccc-------ccCCCceeEEEEccc
Q psy11730        352 SLS-------AVIHSKFDIILTSET  369 (496)
Q Consensus       352 ~~~-------~~~~~~fD~Ii~~~~  369 (496)
                      +..       ....+.||+|+++.+
T Consensus        83 ~~~~~~~l~~~~~~~~~D~V~~~~~  107 (188)
T TIGR00438        83 DEEVLNKIRERVGDDKVDVVMSDAA  107 (188)
T ss_pred             ChhHHHHHHHHhCCCCccEEEcCCC
Confidence            532       112467999999654

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.22  E-value=3.4e-06  Score=89.05  Aligned_cols=126  Identities=18%  Similarity=0.093  Sum_probs=85.2

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc---cCCCcee
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA---VIHSKFD  362 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~fD  362 (496)
                      .+|.+|||+|||+|..+..+++..  .++|+++|+++.+++.++++....   +..+++++.+|..++..   ...++||
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~---g~~~v~~~~~D~~~~~~~~~~~~~~fD  327 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL---GLKSIKILAADSRNLLELKPQWRGYFD  327 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc---CCCeEEEEeCChhhcccccccccccCC
Confidence            357899999999999999998753  368999999999999988765433   24579999999887652   1246899


Q ss_pred             EEEEccccc------cccc----------------hHhHhhe-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcC
Q psy11730        363 IILTSETIY------SVAN----------------YNKLLTV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYP  418 (496)
Q Consensus       363 ~Ii~~~~l~------~~~~----------------~~~~~~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (496)
                      .|+++.+..      +.++                ...++.. + .+.|+|.   +++..-.....+....+.+|...++
T Consensus       328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~---lvystcsi~~~Ene~~v~~~l~~~~  404 (434)
T PRK14901        328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGT---LVYATCTLHPAENEAQIEQFLARHP  404 (434)
T ss_pred             EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE---EEEEeCCCChhhHHHHHHHHHHhCC
Confidence            999865532      2222                1223332 2 5566654   5555544444455666767766555


Q ss_pred             C
Q psy11730        419 R  419 (496)
Q Consensus       419 ~  419 (496)
                      .
T Consensus       405 ~  405 (434)
T PRK14901        405 D  405 (434)
T ss_pred             C
Confidence            4

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.16  E-value=6.1e-06  Score=86.94  Aligned_cols=127  Identities=20%  Similarity=0.157  Sum_probs=83.2

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|..+..+++.. ..+|+|+|+++.+++.++++....+.  ...+.+..+|...... ...++||.|+
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~~~~~~~~~fD~Vl  314 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGPSQWAENEQFDRIL  314 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeccccccccccccccccCEEE
Confidence            357899999999999999998754 47999999999999998876644331  1234446666554332 1256899999


Q ss_pred             Eccccc------cccc----------------hHhHhhe-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcCC
Q psy11730        366 TSETIY------SVAN----------------YNKLLTV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPR  419 (496)
Q Consensus       366 ~~~~l~------~~~~----------------~~~~~~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (496)
                      +..+..      ..++                ...++.. + .+.|+|.   +++..-.....+....+.+|...++.
T Consensus       315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~---lvystcs~~~~Ene~~v~~~l~~~~~  389 (426)
T TIGR00563       315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGT---LVYATCSVLPEENSEQIKAFLQEHPD  389 (426)
T ss_pred             EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE---EEEEeCCCChhhCHHHHHHHHHhCCC
Confidence            764433      2222                1223333 2 5667664   56665555555667777777776654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.12  E-value=3.6e-06  Score=81.36  Aligned_cols=78  Identities=18%  Similarity=0.107  Sum_probs=61.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-c-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-----CCCce
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-G-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-----IHSKF  361 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~f  361 (496)
                      ++++|||||||+|..++.++.. + ..+|+++|+++++++.|+++....+  ...+++++.+|+.+....     ..++|
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            5789999999999999888764 2 3799999999999999988765443  346899999998765321     13689


Q ss_pred             eEEEEcc
Q psy11730        362 DIILTSE  368 (496)
Q Consensus       362 D~Ii~~~  368 (496)
                      |+|+...
T Consensus       146 D~VfiDa  152 (234)
T PLN02781        146 DFAFVDA  152 (234)
T ss_pred             CEEEECC
Confidence            9999964

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=1e-05  Score=78.37  Aligned_cols=94  Identities=15%  Similarity=0.125  Sum_probs=75.1

Q ss_pred             hHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        275 TFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       275 ~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ...+++.|.+...+. +..|||||+|.|.++..|++.+.. |++||+++.++...++...     ...|++++++|+.+.
T Consensus        15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~-----~~~n~~vi~~DaLk~   88 (259)
T COG0030          15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFA-----PYDNLTVINGDALKF   88 (259)
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhcc-----cccceEEEeCchhcC
Confidence            344566777666544 689999999999999999998865 9999999999999887652     367899999999988


Q ss_pred             cccCCCceeEEEEcccccccc
Q psy11730        354 SAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      .......++.|++|-+++-.+
T Consensus        89 d~~~l~~~~~vVaNlPY~Iss  109 (259)
T COG0030          89 DFPSLAQPYKVVANLPYNISS  109 (259)
T ss_pred             cchhhcCCCEEEEcCCCcccH
Confidence            763112789999999976653

>PRK01581 speE spermidine synthase; Validated

Probab=98.12  E-value=5.3e-06  Score=83.94  Aligned_cols=81  Identities=21%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCc--ccccc--cCCCCceEEEecccCCccccCCCcee
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLP--NILMN--TDNLEKCKFYHGDWGSLSAVIHSKFD  362 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~--~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~fD  362 (496)
                      ...++||+||||+|.....+++... .+|++||++++|++.|++.  ....+  ....++++++.+|..+......+.||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            4577999999999999988887654 7999999999999999962  11111  12467999999998876544457899


Q ss_pred             EEEEcc
Q psy11730        363 IILTSE  368 (496)
Q Consensus       363 ~Ii~~~  368 (496)
                      +|++..
T Consensus       229 VIIvDl  234 (374)
T PRK01581        229 VIIIDF  234 (374)
T ss_pred             EEEEcC
Confidence            999974

>PRK03612 spermidine synthase; Provisional

Probab=98.08  E-value=6.4e-06  Score=88.79  Aligned_cols=84  Identities=20%  Similarity=0.153  Sum_probs=65.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcc--cccc--cCCCCceEEEecccCCccccCCCceeE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPN--ILMN--TDNLEKCKFYHGDWGSLSAVIHSKFDI  363 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~--~~~~--~~~~~~v~~~~~d~~~~~~~~~~~fD~  363 (496)
                      ++++|||||||+|..+..+++... .+|+++|+++++++.++++.  ...+  ....++++++.+|..+......++||+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            578999999999999999888765 79999999999999999842  1111  123578999999988754433578999


Q ss_pred             EEEcccccc
Q psy11730        364 ILTSETIYS  372 (496)
Q Consensus       364 Ii~~~~l~~  372 (496)
                      |+++.+...
T Consensus       377 Ii~D~~~~~  385 (521)
T PRK03612        377 IIVDLPDPS  385 (521)
T ss_pred             EEEeCCCCC
Confidence            999865433

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.08  E-value=4e-06  Score=75.69  Aligned_cols=77  Identities=22%  Similarity=0.246  Sum_probs=54.8

Q ss_pred             CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC-C-ceeEEEEcc
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH-S-KFDIILTSE  368 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~-~fD~Ii~~~  368 (496)
                      +.|+|+.||.|..++.+|+.. .+|++||+++..++.|+.++...+  ...+|.|+++|+.++..... . .||+|++++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            369999999999999988884 689999999999999998765443  36789999999988754322 2 289999987


Q ss_pred             cc
Q psy11730        369 TI  370 (496)
Q Consensus       369 ~l  370 (496)
                      |-
T Consensus        78 PW   79 (163)
T PF09445_consen   78 PW   79 (163)
T ss_dssp             -B
T ss_pred             CC
Confidence            64

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.07  E-value=7.9e-06  Score=86.00  Aligned_cols=80  Identities=28%  Similarity=0.292  Sum_probs=57.4

Q ss_pred             CCeEEEecCcCCHHHHHHHHcc-----CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEE
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNG-----AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~-----~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      ++.|||||||+|.++.++++.+     +.+|++||-|+.++..+++....+  +-..+|+++++|++++..  ..++|+|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w~~~V~vi~~d~r~v~l--pekvDII  262 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GWGDKVTVIHGDMREVEL--PEKVDII  262 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TTTTTEEEEES-TTTSCH--SS-EEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CCCCeEEEEeCcccCCCC--CCceeEE
Confidence            6789999999999999887765     579999999998887655432111  235689999999999887  5699999


Q ss_pred             EEccccccc
Q psy11730        365 LTSETIYSV  373 (496)
Q Consensus       365 i~~~~l~~~  373 (496)
                      ||..+-.+.
T Consensus       263 VSElLGsfg  271 (448)
T PF05185_consen  263 VSELLGSFG  271 (448)
T ss_dssp             EE---BTTB
T ss_pred             EEeccCCcc
Confidence            997665443

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00417 speE spermidine synthase

Probab=98.04  E-value=1.1e-05  Score=79.65  Aligned_cols=81  Identities=20%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .+++||+||||+|.++..+++.. ..+|+++|+++++++.+++.....+ .....+++++.+|..+......++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            46799999999999999988776 4789999999999999887543322 123467888888876543332578999999


Q ss_pred             ccc
Q psy11730        367 SET  369 (496)
Q Consensus       367 ~~~  369 (496)
                      ..+
T Consensus       152 D~~  154 (270)
T TIGR00417       152 DST  154 (270)
T ss_pred             eCC
Confidence            765

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.04  E-value=9.1e-06  Score=77.53  Aligned_cols=98  Identities=22%  Similarity=0.264  Sum_probs=72.1

Q ss_pred             hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCc-ccccc--------cCCCCceEE
Q psy11730        275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP-NILMN--------TDNLEKCKF  345 (496)
Q Consensus       275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~-~~~~~--------~~~~~~v~~  345 (496)
                      +-.|.+++.......+.+||..|||.|.....||+.|. +|+|+|+|+.+++.+.+. +...+        .....+|++
T Consensus        23 ~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~  101 (218)
T PF05724_consen   23 NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI  101 (218)
T ss_dssp             THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred             CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence            45677777763334567999999999999999999985 899999999999987332 21111        113457899


Q ss_pred             EecccCCccccCCCceeEEEEccccccc
Q psy11730        346 YHGDWGSLSAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       346 ~~~d~~~~~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      +++|+-++.....++||+|+=..++.-+
T Consensus       102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Al  129 (218)
T PF05724_consen  102 YCGDFFELPPEDVGKFDLIYDRTFLCAL  129 (218)
T ss_dssp             EES-TTTGGGSCHHSEEEEEECSSTTTS
T ss_pred             EEcccccCChhhcCCceEEEEecccccC
Confidence            9999998876544689999987777666

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.04  E-value=1.4e-05  Score=75.03  Aligned_cols=89  Identities=22%  Similarity=0.201  Sum_probs=61.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++..|||+.||.|.+++.+|+. .++.|+++|++|.+++.++++...++  ...++.++++|..++..  ...||.|+++
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~~D~~~~~~--~~~~drvim~  176 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVINGDAREFLP--EGKFDRVIMN  176 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG-----TT-EEEEEE-
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEcCCHHHhcC--ccccCEEEEC
Confidence            5889999999999999999884 44789999999999999887654443  34678999999988776  6899999998


Q ss_pred             cccccccchHhHhh
Q psy11730        368 ETIYSVANYNKLLT  381 (496)
Q Consensus       368 ~~l~~~~~~~~~~~  381 (496)
                      .+-....-++.++.
T Consensus       177 lp~~~~~fl~~~~~  190 (200)
T PF02475_consen  177 LPESSLEFLDAALS  190 (200)
T ss_dssp             -TSSGGGGHHHHHH
T ss_pred             ChHHHHHHHHHHHH
Confidence            87555544444443

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.03  E-value=6e-06  Score=84.84  Aligned_cols=99  Identities=17%  Similarity=0.166  Sum_probs=78.6

Q ss_pred             eecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        271 IWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       271 ~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      +|.+......++.+..  +|++|||+.|=||.+++.+|..|+.+||+||.|...++.|+++. ..|.....++.|+.+|+
T Consensus       201 fFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~-~LNg~~~~~~~~i~~Dv  277 (393)
T COG1092         201 FFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENA-ELNGLDGDRHRFIVGDV  277 (393)
T ss_pred             eeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHH-HhcCCCccceeeehhhH
Confidence            4666666666666554  49999999999999999988889999999999999999998765 44545567789999997


Q ss_pred             CCccccC---CCceeEEEEcccccc
Q psy11730        351 GSLSAVI---HSKFDIILTSETIYS  372 (496)
Q Consensus       351 ~~~~~~~---~~~fD~Ii~~~~l~~  372 (496)
                      -+.....   ..+||+|+..+|-.-
T Consensus       278 f~~l~~~~~~g~~fDlIilDPPsF~  302 (393)
T COG1092         278 FKWLRKAERRGEKFDLIILDPPSFA  302 (393)
T ss_pred             HHHHHHHHhcCCcccEEEECCcccc
Confidence            7655432   348999999887543

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.02  E-value=1.3e-05  Score=79.71  Aligned_cols=97  Identities=19%  Similarity=0.164  Sum_probs=70.6

Q ss_pred             HHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        278 LLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       278 l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      |++.+.+... .++..+||.+||.|.++..+++...  .+|+|+|.+++|++.++++...     ..++.++++++.++.
T Consensus         7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~   81 (296)
T PRK00050          7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLK   81 (296)
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHH
Confidence            3334444433 4577999999999999999998864  7899999999999999876422     458999999998875


Q ss_pred             ccCCC---ceeEEEEcccc--ccccchHhH
Q psy11730        355 AVIHS---KFDIILTSETI--YSVANYNKL  379 (496)
Q Consensus       355 ~~~~~---~fD~Ii~~~~l--~~~~~~~~~  379 (496)
                      .....   ++|.|+++.=+  +.+.+.+.=
T Consensus        82 ~~l~~~~~~vDgIl~DLGvSs~Qld~~~RG  111 (296)
T PRK00050         82 EVLAEGLGKVDGILLDLGVSSPQLDDAERG  111 (296)
T ss_pred             HHHHcCCCccCEEEECCCccccccCCCcCC
Confidence            44332   79999984333  333444443

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.00  E-value=2.6e-05  Score=69.46  Aligned_cols=98  Identities=17%  Similarity=0.240  Sum_probs=78.6

Q ss_pred             eecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe
Q psy11730        271 IWECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH  347 (496)
Q Consensus       271 ~~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~  347 (496)
                      +-+++-.+++.+...++.. |.-|||+|.|||.++.++..+|.  ..+++||+|++.+....+.        .+.+.++.
T Consensus        29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~ii~  100 (194)
T COG3963          29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNIIN  100 (194)
T ss_pred             ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccccc
Confidence            3577778888888887655 77999999999999999999887  6799999999999987764        34566889


Q ss_pred             cccCCccc----cCCCceeEEEEccccccccch
Q psy11730        348 GDWGSLSA----VIHSKFDIILTSETIYSVANY  376 (496)
Q Consensus       348 ~d~~~~~~----~~~~~fD~Ii~~~~l~~~~~~  376 (496)
                      +|+.++..    ..+..||.|+|.-++-.++-.
T Consensus       101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~  133 (194)
T COG3963         101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMH  133 (194)
T ss_pred             cchhhHHHHHhhcCCCeeeeEEeccccccCcHH
Confidence            99887652    224579999998887777543

>KOG2187|consensus

Probab=97.99  E-value=7.6e-06  Score=84.86  Aligned_cols=74  Identities=23%  Similarity=0.346  Sum_probs=60.9

Q ss_pred             HHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        277 DLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       277 ~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      .|...+.+..+++ ++.+||+.||||.+++. ..++.++|+||++++++++.|+.++..++   ..|++|+.+-+|++-
T Consensus       370 vLys~i~e~~~l~~~k~llDv~CGTG~igla-la~~~~~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqaE~~~  444 (534)
T KOG2187|consen  370 VLYSTIGEWAGLPADKTLLDVCCGTGTIGLA-LARGVKRVIGVEISPDAVEDAEKNAQING---ISNATFIVGQAEDLF  444 (534)
T ss_pred             HHHHHHHHHhCCCCCcEEEEEeecCCceehh-hhccccceeeeecChhhcchhhhcchhcC---ccceeeeecchhhcc
Confidence            4566666666665 67899999999999999 55677899999999999999998876554   899999999777654

>KOG0820|consensus

Probab=97.98  E-value=2.8e-05  Score=74.51  Aligned_cols=92  Identities=21%  Similarity=0.235  Sum_probs=73.0

Q ss_pred             HHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..+++.|.+..+++ +..|||+|.|||.++..|.+.|. .|+|+|+++.|++...++..  +......++++++|+...+
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~--gtp~~~kLqV~~gD~lK~d  120 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQ--GTPKSGKLQVLHGDFLKTD  120 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhc--CCCccceeeEEecccccCC
Confidence            34566666666655 77999999999999999888875 69999999999999887752  2223578999999998875


Q ss_pred             ccCCCceeEEEEccccccc
Q psy11730        355 AVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~  373 (496)
                         ...||++|++-++..-
T Consensus       121 ---~P~fd~cVsNlPyqIS  136 (315)
T KOG0820|consen  121 ---LPRFDGCVSNLPYQIS  136 (315)
T ss_pred             ---CcccceeeccCCcccc
Confidence               3679999998886554

>PLN02366 spermidine synthase

Probab=97.98  E-value=2.5e-05  Score=78.36  Aligned_cols=82  Identities=15%  Similarity=0.101  Sum_probs=64.1

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccC-CCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVI-HSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~-~~~fD~I  364 (496)
                      .++++||+||||.|.++..+++... .+|+.+|+++.+++.+++.....+ ....++++++.+|..+..... .+.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            3578999999999999999988754 789999999999999988754322 124678999999976543321 4689999


Q ss_pred             EEccc
Q psy11730        365 LTSET  369 (496)
Q Consensus       365 i~~~~  369 (496)
                      ++...
T Consensus       170 i~D~~  174 (308)
T PLN02366        170 IVDSS  174 (308)
T ss_pred             EEcCC
Confidence            99644

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.96  E-value=1.7e-05  Score=73.32  Aligned_cols=94  Identities=17%  Similarity=0.105  Sum_probs=66.4

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC-Ce---------EEEEeCCHHHHHHhcCcccccccCCCCceEE
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA-AH---------VSFQDYNQEVIESLTLPNILMNTDNLEKCKF  345 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~-~~---------v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~  345 (496)
                      .++..|...... ++..|||--||+|.+.+..+..+. ..         ++|+|++++++..++.+....  +....+.+
T Consensus        15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a--g~~~~i~~   92 (179)
T PF01170_consen   15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA--GVEDYIDF   92 (179)
T ss_dssp             HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT--T-CGGEEE
T ss_pred             HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc--ccCCceEE
Confidence            345555554443 467999999999999999876655 33         889999999999988775433  34567899


Q ss_pred             EecccCCccccCCCceeEEEEccccccc
Q psy11730        346 YHGDWGSLSAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       346 ~~~d~~~~~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .+.|+.+++.. .+.+|+|++++++-.-
T Consensus        93 ~~~D~~~l~~~-~~~~d~IvtnPPyG~r  119 (179)
T PF01170_consen   93 IQWDARELPLP-DGSVDAIVTNPPYGRR  119 (179)
T ss_dssp             EE--GGGGGGT-TSBSCEEEEE--STTS
T ss_pred             Eecchhhcccc-cCCCCEEEECcchhhh
Confidence            99999998833 6899999999998764

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.92  E-value=2.3e-05  Score=79.43  Aligned_cols=118  Identities=20%  Similarity=0.124  Sum_probs=70.1

Q ss_pred             ecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccC-------CCCce
Q psy11730        272 WECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD-------NLEKC  343 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~-------~~~~v  343 (496)
                      |..+..+..++..... .++.+|||||||-|.....-...+..+++|+|++...|+.|+.+-......       ..-..
T Consensus        44 wvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a  123 (331)
T PF03291_consen   44 WVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA  123 (331)
T ss_dssp             HHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred             HHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence            4444444444432221 257899999999766655558888999999999999999999886322211       11245


Q ss_pred             EEEecccCCcc-----ccCCCceeEEEEccccccc-cchH---hHhhee--eecCCC
Q psy11730        344 KFYHGDWGSLS-----AVIHSKFDIILTSETIYSV-ANYN---KLLTVW--CLFPTH  389 (496)
Q Consensus       344 ~~~~~d~~~~~-----~~~~~~fD~Ii~~~~l~~~-~~~~---~~~~~~--~l~p~~  389 (496)
                      .|+.+|.....     ......||+|-|..++|+. .+.+   .+++..  .|.|+|
T Consensus       124 ~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG  180 (331)
T PF03291_consen  124 EFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG  180 (331)
T ss_dssp             EEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             heeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Confidence            66777644221     1112599999999999998 3322   233332  666765

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.89  E-value=1.4e-05  Score=72.66  Aligned_cols=74  Identities=15%  Similarity=0.136  Sum_probs=59.0

Q ss_pred             EEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        316 SFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       316 ~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +|+|+|++|++.|+++....+.....+++++++|+++++.. +++||+|++..+++++.++..+++++  .|.|++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~   76 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD-DCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSR   76 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC-CCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeE
Confidence            48999999999997654322222345799999999998764 67999999999999999999999884  7777653

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.86  E-value=3e-05  Score=72.70  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=60.4

Q ss_pred             CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-c-CCCceeEEEEc
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-V-IHSKFDIILTS  367 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~-~~~~fD~Ii~~  367 (496)
                      ..+||||||.|.+.+.+|+..+ ..++|+|++...+..+.++....   ...|+.++++|+..+.. . .++++|.|..+
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence            3899999999999999999888 78999999999999988776554   47899999999887432 2 25899999988


Q ss_pred             cccccc
Q psy11730        368 ETIYSV  373 (496)
Q Consensus       368 ~~l~~~  373 (496)
                      .+=-+.
T Consensus        96 FPDPWp  101 (195)
T PF02390_consen   96 FPDPWP  101 (195)
T ss_dssp             S-----
T ss_pred             CCCCCc
Confidence            776665

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.85  E-value=1.9e-05  Score=81.68  Aligned_cols=76  Identities=26%  Similarity=0.368  Sum_probs=60.4

Q ss_pred             CCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      +.+|||++||+|.+++.++.. +..+|+++|+++.+++.++++...++   ..++.+.++|+..+... ...||+|++++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~---~~~~~v~~~Da~~~l~~-~~~fD~V~lDP  133 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG---LENEKVFNKDANALLHE-ERKFDVVDIDP  133 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCceEEEhhhHHHHHhh-cCCCCEEEECC
Confidence            468999999999999999765 44789999999999999886653332   44677899998775432 35799999987


Q ss_pred             c
Q psy11730        369 T  369 (496)
Q Consensus       369 ~  369 (496)
                      +
T Consensus       134 ~  134 (382)
T PRK04338        134 F  134 (382)
T ss_pred             C
Confidence            4

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=2.6e-05  Score=77.59  Aligned_cols=116  Identities=17%  Similarity=0.312  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHhcCCCCcEEEecCCCCCcCCCCCCHHHHHhhcCCeeEEeee---cCCC---ccccCHHHHHHHhhcCCC
Q psy11730         61 KDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGE---DNHG---YSKLGKKYRNQKFKCGED  134 (496)
Q Consensus        61 ~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~~L~~~~g~~~v~v~~---~~~~---~~~m~~~~f~~~~~~~~~  134 (496)
                      ..+|+++|++.|-. .||+||+|+..+.  ...-+++-|.+-+-...|...-   ..++   .+.-+|.++= +.... .
T Consensus        13 ~glt~~~FL~~YWq-kKPlliR~a~p~~--~~p~~pdeLa~La~~edV~srLV~~~~~~~w~~~~gPfe~~d-~~~~p-~   87 (383)
T COG2850          13 LGLTPEDFLRDYWQ-KKPLLIRNAFPEF--HSPLSPDELAGLAQEEDVTSRLVSHESDGTWQVSHGPFEEED-FLGLP-R   87 (383)
T ss_pred             CCCCHHHHHHHHhh-hcchHHhhccccc--ccCCCHHHHHHHhccccccchhhhhccCCceeEeeCccchhc-cccCC-c
Confidence            47999999999998 8999999998552  2344566688877776665541   1111   1123333221 11111 1


Q ss_pred             CCCCC--------ccccccccccCC-CCCCCchhhhcccCCCCCCCccceEecCCCCccccccCCCCCCC
Q psy11730        135 NHGYS--------HPRRKKLLDDYE-VPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNP  195 (496)
Q Consensus       135 ~p~y~--------~~~~~~L~~d~~-~P~~f~~d~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~~~  195 (496)
                      + +.+        ......|.+.|. +|..=.+|.+             +...+.|.+.+-|+|.+..++
T Consensus        88 ~-wsllvq~vd~w~p~v~~l~~~FrflP~wr~ddiM-------------IS~a~~GGgvg~H~D~YDVfl  143 (383)
T COG2850          88 N-WSLLVQAVDHWHPEVAALMEPFRFLPDWRIDDIM-------------ISFAAPGGGVGPHFDQYDVFL  143 (383)
T ss_pred             C-ceEEEehhhhcCHHHHHHHHHhccCccccccceE-------------EEEecCCCccCccccchheeE
Confidence            1 111        122345555565 5644334432             445788889999999999999

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.82  E-value=2.4e-05  Score=77.36  Aligned_cols=97  Identities=18%  Similarity=0.214  Sum_probs=68.2

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      +.+....-.++.+.  .++++|||+.|=||.+++.++..|+.+|+.||.|..+++.++++... |.....+++|+.+|+.
T Consensus       108 FlDqR~nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf  184 (286)
T PF10672_consen  108 FLDQRENRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVF  184 (286)
T ss_dssp             -GGGHHHHHHHHHH--CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HH
T ss_pred             cHHHHhhHHHHHHH--cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHH
Confidence            44444444555554  36899999999999999998888889999999999999999986544 4344578999999977


Q ss_pred             Ccccc--CCCceeEEEEccccc
Q psy11730        352 SLSAV--IHSKFDIILTSETIY  371 (496)
Q Consensus       352 ~~~~~--~~~~fD~Ii~~~~l~  371 (496)
                      +....  ..+.||+||+.+|-.
T Consensus       185 ~~l~~~~~~~~fD~IIlDPPsF  206 (286)
T PF10672_consen  185 KFLKRLKKGGRFDLIILDPPSF  206 (286)
T ss_dssp             HHHHHHHHTT-EEEEEE--SSE
T ss_pred             HHHHHHhcCCCCCEEEECCCCC
Confidence            64321  246899999988844

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=97.79  E-value=1.5e-05  Score=67.60  Aligned_cols=39  Identities=38%  Similarity=0.647  Sum_probs=31.8

Q ss_pred             CCCCchhhhccCCceeeeCCcceEEEEeeeeeEEEeecc
Q psy11730        427 TEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNF  465 (496)
Q Consensus       427 ~~~~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~  465 (496)
                      .+.++..++|+|||++++|.||+|+|.|++.|++++.||
T Consensus        76 ~gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf  114 (114)
T PF02373_consen   76 AGIPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF  114 (114)
T ss_dssp             TTS--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred             cCcccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence            356788999999999999999999999999999999997

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>KOG1975|consensus

Probab=97.78  E-value=2.1e-05  Score=77.03  Aligned_cols=102  Identities=22%  Similarity=0.146  Sum_probs=70.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccccc---CCCCceEEEecccC-----CccccCCCc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT---DNLEKCKFYHGDWG-----SLSAVIHSK  360 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~---~~~~~v~~~~~d~~-----~~~~~~~~~  360 (496)
                      ++..++|||||-|...+.--+.|..+++|||+.+-.|+.|+++...-.+   ...=.+.|+.+|-.     ++....+.+
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~  196 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR  196 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence            5788999999999988888899999999999999999999887432211   11224677877732     222122445


Q ss_pred             eeEEEEccccccc-cchHh---Hhhe--eeecCCCC
Q psy11730        361 FDIILTSETIYSV-ANYNK---LLTV--WCLFPTHT  390 (496)
Q Consensus       361 fD~Ii~~~~l~~~-~~~~~---~~~~--~~l~p~~~  390 (496)
                      ||+|-|-.++|+- ...+.   ++..  -+|.|+|.
T Consensus       197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~  232 (389)
T KOG1975|consen  197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGV  232 (389)
T ss_pred             cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcE
Confidence            9999999888876 33332   3333  27777763

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.76  E-value=3.2e-05  Score=73.02  Aligned_cols=79  Identities=14%  Similarity=0.144  Sum_probs=60.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-----CCce
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-----HSKF  361 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~f  361 (496)
                      +.++|||||||+|+-++.+|+.-+  ++|+.+|.+++..+.|++.....+  ...+|+++.+|+.+.....     .++|
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLPELANDGEEGQF  122 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHHHHHhccCCCce
Confidence            678999999999999999997643  799999999999999887654433  3468999999987643321     2579


Q ss_pred             eEEEEccc
Q psy11730        362 DIILTSET  369 (496)
Q Consensus       362 D~Ii~~~~  369 (496)
                      |+|+....
T Consensus       123 D~VFiDa~  130 (205)
T PF01596_consen  123 DFVFIDAD  130 (205)
T ss_dssp             EEEEEEST
T ss_pred             eEEEEccc
Confidence            99999543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02476 O-methyltransferase

Probab=97.74  E-value=4.8e-05  Score=74.84  Aligned_cols=79  Identities=14%  Similarity=0.098  Sum_probs=62.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-----CCce
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-----HSKF  361 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~f  361 (496)
                      +.++|||||||+|..++.++..-  .++|+++|.+++.++.|+++....+  ...+++++.+|+.+.....     .+.|
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            57899999999999999998742  2579999999999999987765443  3468999999987653321     3589


Q ss_pred             eEEEEccc
Q psy11730        362 DIILTSET  369 (496)
Q Consensus       362 D~Ii~~~~  369 (496)
                      |+|+....
T Consensus       196 D~VFIDa~  203 (278)
T PLN02476        196 DFAFVDAD  203 (278)
T ss_pred             CEEEECCC
Confidence            99999655

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.73  E-value=7.2e-05  Score=76.98  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=62.1

Q ss_pred             CeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        291 LSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      -+|||+.||+|..++.++..  |+.+|+++|+|+++++.++++...++   ..++.++++|+..+.......||+|...+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlDP  122 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDIDP  122 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence            48999999999999999987  66899999999999999887653332   34789999998877653346799999977

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG1633|consensus

Probab=97.70  E-value=0.00011  Score=81.19  Aligned_cols=128  Identities=16%  Similarity=0.180  Sum_probs=75.9

Q ss_pred             HHHHHHhcCCCCcEEEec---CCCCCcCCCCCCHHHHHhhcC-CeeEEeeecCCCcc-ccCHHHHHHHhhcCCCC-CCCC
Q psy11730         66 QEFIEKYEKPNKPVVIKG---VTENWNATYKWTLEKLGKKYR-NQKFKCGEDNHGYS-KLGKKYRNQKFKCGEDN-HGYS  139 (496)
Q Consensus        66 eeF~~~y~~~~~PvVi~g---~~~~WpA~~~Wt~~~L~~~~g-~~~v~v~~~~~~~~-~m~~~~f~~~~~~~~~~-p~y~  139 (496)
                      -+|+++-.. +.|..+.+   +-..-|.. .+|..--+.-.| ++.+.|-++..... +|+|++|++|+.....+ -|..
T Consensus         8 ~ef~~~~~~-~~p~~~~~~~~lg~~~p~p-~f~v~dv~~~vg~~r~~~v~dv~~q~~~km~~~~~~~yy~~~~~~R~yNV   85 (776)
T KOG1633|consen    8 VEFLQDNGL-RVPILFRNKDGLGMTLPSP-DFTVNDVKELVGSDRMIDVVDVNTQKDCKMTLKEFVKYYSSPQRKRLYNV   85 (776)
T ss_pred             chhhhhccc-ccchhhccCCCccccCCCC-CcchhhhHHhhCCCccceeeeeeccccccccHHHHhhhhcCcchhhhhhe
Confidence            467766555 68888873   33334443 566665555555 45577776655555 99999999999876654 2221


Q ss_pred             cc-c--cccccccCCCCCCCch-hhh-cccCCCC---CC-CccceEecCCCCccccccCCCCCCC
Q psy11730        140 HP-R--RKKLLDDYEVPIYFQD-DLF-QYAGEDK---RP-PYRWFVMGPARSGTGIHIDPLGTNP  195 (496)
Q Consensus       140 ~~-~--~~~L~~d~~~P~~f~~-d~~-~~~~~~~---~p-~~~w~~iG~~gs~T~lH~D~~~~~~  195 (496)
                      .. .  ...|..-++.|+.... |+. .++++..   .| ....-.|+-.++.|.+|+|+.++++
T Consensus        86 isLEfS~Trl~~~V~~P~ivr~ldwV~n~wP~~~~~~~P~vqkyclmsv~~~Ytdfhidfggtsv  150 (776)
T KOG1633|consen   86 ISLEFSDTRLSNLVESPEIVRKLDWVDNQWPDDLKMEYPKVQKYCLMSVKDSYTDFHIDFGGTSV  150 (776)
T ss_pred             eccccCcchHHhcCCCchhhhhhhchhccCCchhcccccccccceeeeccccccccccCCCCcch
Confidence            11 1  1334444555654421 221 1111111   11 1234569999999999999999999

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.70  E-value=0.00012  Score=69.29  Aligned_cols=91  Identities=12%  Similarity=0.174  Sum_probs=67.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe-cccCCcccc-CCCceeEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH-GDWGSLSAV-IHSKFDII  364 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~-~d~~~~~~~-~~~~fD~I  364 (496)
                      ..++|||||++.|+-++.||..-+  .+++.||.++++++.|+++..+.+  ...++.++. +|+.+.... ..++||+|
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHHHHHHhccCCCccEE
Confidence            678999999999999999987555  689999999999999998765543  344588888 476665442 36899999


Q ss_pred             EEc-cccccccchHhHhh
Q psy11730        365 LTS-ETIYSVANYNKLLT  381 (496)
Q Consensus       365 i~~-~~l~~~~~~~~~~~  381 (496)
                      +.. .--.+...++..++
T Consensus       137 FIDadK~~yp~~le~~~~  154 (219)
T COG4122         137 FIDADKADYPEYLERALP  154 (219)
T ss_pred             EEeCChhhCHHHHHHHHH
Confidence            983 33333333444443

>KOG2940|consensus

Probab=97.68  E-value=4.3e-05  Score=71.34  Aligned_cols=94  Identities=18%  Similarity=0.242  Sum_probs=75.0

Q ss_pred             CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSET  369 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~  369 (496)
                      ...++|||||-|.+...+...+..+++-+|.|..|++.++...     .+.-.+....+|-+.+++. .+++|+|+++..
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-----dp~i~~~~~v~DEE~Ldf~-ens~DLiisSls  146 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-----DPSIETSYFVGDEEFLDFK-ENSVDLIISSLS  146 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-----CCceEEEEEecchhccccc-ccchhhhhhhhh
Confidence            5689999999999999999999999999999999999987642     1233445566777777643 789999999999


Q ss_pred             cccccchHhHhhee--eecCCC
Q psy11730        370 IYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       370 l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +|++.+++.-+..+  .+.|++
T Consensus       147 lHW~NdLPg~m~~ck~~lKPDg  168 (325)
T KOG2940|consen  147 LHWTNDLPGSMIQCKLALKPDG  168 (325)
T ss_pred             hhhhccCchHHHHHHHhcCCCc
Confidence            99998888766543  556654

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.67  E-value=0.00015  Score=71.42  Aligned_cols=94  Identities=15%  Similarity=0.177  Sum_probs=74.6

Q ss_pred             ecchHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      +-....+++.|.+...+ ++..|||||+|.|.++..|++.+ ++|+++|+++.++...+++..     ...+++++.+|+
T Consensus        12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-----~~~~~~vi~~D~   85 (262)
T PF00398_consen   12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-----SNPNVEVINGDF   85 (262)
T ss_dssp             EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-----TCSSEEEEES-T
T ss_pred             eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-----hcccceeeecch
Confidence            34455677777776665 57899999999999999999988 899999999999998886542     367899999999


Q ss_pred             CCccccC--CCceeEEEEccccc
Q psy11730        351 GSLSAVI--HSKFDIILTSETIY  371 (496)
Q Consensus       351 ~~~~~~~--~~~fD~Ii~~~~l~  371 (496)
                      .++....  ......|+++.+++
T Consensus        86 l~~~~~~~~~~~~~~vv~NlPy~  108 (262)
T PF00398_consen   86 LKWDLYDLLKNQPLLVVGNLPYN  108 (262)
T ss_dssp             TTSCGGGHCSSSEEEEEEEETGT
T ss_pred             hccccHHhhcCCceEEEEEeccc
Confidence            9877642  34677899988863

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.63  E-value=0.00019  Score=69.56  Aligned_cols=87  Identities=18%  Similarity=0.193  Sum_probs=61.4

Q ss_pred             HHHhCCCC-CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc--
Q psy11730        281 FIKDNVAV-DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA--  355 (496)
Q Consensus       281 ~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~--  355 (496)
                      +|....++ +|++|||.|.|+|.++.+|+.. ++ ++|+..|..++.++.|+++....  +...++++.+.|+.+..+  
T Consensus        31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl~~~v~~~~~Dv~~~g~~~  108 (247)
T PF08704_consen   31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GLDDNVTVHHRDVCEEGFDE  108 (247)
T ss_dssp             HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TCCTTEEEEES-GGCG--ST
T ss_pred             HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CCCCCceeEecceecccccc
Confidence            33333443 5899999999999999999964 43 79999999999999999875443  346799999999865333  


Q ss_pred             cCCCceeEEEEccc
Q psy11730        356 VIHSKFDIILTSET  369 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~  369 (496)
                      .....+|.|+...+
T Consensus       109 ~~~~~~DavfLDlp  122 (247)
T PF08704_consen  109 ELESDFDAVFLDLP  122 (247)
T ss_dssp             T-TTSEEEEEEESS
T ss_pred             cccCcccEEEEeCC
Confidence            22468999998544

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.63  E-value=0.00015  Score=81.00  Aligned_cols=83  Identities=17%  Similarity=0.175  Sum_probs=65.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-------------------------------------------CCeEEEEeCCHHHH
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-------------------------------------------AAHVSFQDYNQEVI  325 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-------------------------------------------~~~v~giD~s~~~i  325 (496)
                      .+..++|-+||+|.+.+.+|...                                           ..+++|+|+++.++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            46799999999999999976521                                           12699999999999


Q ss_pred             HHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEEEccccccc
Q psy11730        326 ESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIILTSETIYSV  373 (496)
Q Consensus       326 ~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~~~l~~~  373 (496)
                      +.|+.+....+  ....+.|.++|+.++.... .++||+|++|+|+..-
T Consensus       270 ~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r  316 (702)
T PRK11783        270 QAARKNARRAG--VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER  316 (702)
T ss_pred             HHHHHHHHHcC--CCcceEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence            99998765433  3456899999998876532 2579999999998543

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.60  E-value=0.00014  Score=67.35  Aligned_cols=75  Identities=19%  Similarity=0.277  Sum_probs=58.3

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      +.+++|||+|.|..++.+|-..+ .+++.+|.+..-+.+.+.-....   +..|++++++++++  ......||+|++-.
T Consensus        49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~--~~~~~~fd~v~aRA  123 (184)
T PF02527_consen   49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL---GLSNVEVINGRAEE--PEYRESFDVVTARA  123 (184)
T ss_dssp             CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH---T-SSEEEEES-HHH--TTTTT-EEEEEEES
T ss_pred             CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh---CCCCEEEEEeeecc--cccCCCccEEEeeh
Confidence            33899999999999999998887 68999999999988876554443   36789999999998  22268999999965


Q ss_pred             c
Q psy11730        369 T  369 (496)
Q Consensus       369 ~  369 (496)
                      +
T Consensus       124 v  124 (184)
T PF02527_consen  124 V  124 (184)
T ss_dssp             S
T ss_pred             h
Confidence            4

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG3201|consensus

Probab=97.59  E-value=1.8e-05  Score=69.99  Aligned_cols=126  Identities=21%  Similarity=0.253  Sum_probs=87.0

Q ss_pred             ccCceeeecchHHHHHHHHhCCC-CCCCeEEEecCcC-CHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730        265 YEGGYKIWECTFDLLNFIKDNVA-VDKLSVLDVGCGA-GLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLE  341 (496)
Q Consensus       265 ~~~~~~~~~~~~~l~~~l~~~~~-~~~~~VLDlGcGt-G~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~  341 (496)
                      +++.-++|+++..|+-.+..... ..|++|||+|.|- |.-++.+|...+ ..|...|-+++.+...++-...+......
T Consensus         4 ntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~t   83 (201)
T KOG3201|consen    4 NTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLT   83 (201)
T ss_pred             CCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccc
Confidence            46677899999999988887753 6789999999994 676777665544 78999999999988665432111122334


Q ss_pred             ceEEEecccCC-ccccCCCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730        342 KCKFYHGDWGS-LSAVIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       342 ~v~~~~~d~~~-~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      .+.++.-++.. ........||+|++.+++.+-+..+.+.+.  ..|.|.+.
T Consensus        84 sc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~  135 (201)
T KOG3201|consen   84 SCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGR  135 (201)
T ss_pred             eehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccc
Confidence            44444444332 222224689999999999888777777765  25666654

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.57  E-value=0.00016  Score=67.87  Aligned_cols=90  Identities=18%  Similarity=0.168  Sum_probs=61.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ...+.||.|||.|..+..++...+.+|..+|.++.+++.|++....   ....-.++++..++++.+. .+.||+|++.+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~---~~~~v~~~~~~gLQ~f~P~-~~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK---DNPRVGEFYCVGLQDFTPE-EGKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC---GGCCEEEEEES-GGG-----TT-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc---cCCCcceEEecCHhhccCC-CCcEeEEEehH
Confidence            3568999999999999998877789999999999999999854322   1134457788888877653 47999999999


Q ss_pred             ccccccchH--hHhhe
Q psy11730        369 TIYSVANYN--KLLTV  382 (496)
Q Consensus       369 ~l~~~~~~~--~~~~~  382 (496)
                      ++-|+.|.+  .++++
T Consensus       131 ~lghLTD~dlv~fL~R  146 (218)
T PF05891_consen  131 CLGHLTDEDLVAFLKR  146 (218)
T ss_dssp             -GGGS-HHHHHHHHHH
T ss_pred             hhccCCHHHHHHHHHH
Confidence            999996654  45554

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG2361|consensus

Probab=97.55  E-value=9.9e-05  Score=69.73  Aligned_cols=109  Identities=21%  Similarity=0.220  Sum_probs=69.9

Q ss_pred             HHHHHHHhCCCCCCC---eEEEecCcCCHHHHHHHHccC---CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        277 DLLNFIKDNVAVDKL---SVLDVGCGAGLLGLYTLMNGA---AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~---~VLDlGcGtG~~~~~la~~~~---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      -|...+-+...+..+   +|||||||.|.....+.+..+   -.|+++|.|+.+++..+++....    ..++.....|+
T Consensus        56 wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dl  131 (264)
T KOG2361|consen   56 WLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDL  131 (264)
T ss_pred             HHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceec
Confidence            344444444433322   699999999999999988655   47999999999999988764221    23343344443


Q ss_pred             CCcc--c-cCCCceeEEEEccccccc--cchHhHhhee--eecCCC
Q psy11730        351 GSLS--A-VIHSKFDIILTSETIYSV--ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       351 ~~~~--~-~~~~~fD~Ii~~~~l~~~--~~~~~~~~~~--~l~p~~  389 (496)
                      ....  . ...+++|+|++..+|.-+  .....+++.+  ++.|+|
T Consensus       132 t~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG  177 (264)
T KOG2361|consen  132 TSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGG  177 (264)
T ss_pred             cchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCc
Confidence            3221  1 125789999998888777  3344445442  555655

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.54  E-value=0.00035  Score=67.74  Aligned_cols=85  Identities=19%  Similarity=0.259  Sum_probs=63.9

Q ss_pred             HHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        280 NFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       280 ~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      ..+....+.+ .++|||||+|+|.++..+++..+ .+++..|+ |+.++.+++         ..++++..+|+.+ +.  
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f~-~~--  156 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFFD-PL--  156 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TTT-CC--
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHHh-hh--
Confidence            4455555554 56899999999999999999888 68999999 777776654         5689999999872 22  


Q ss_pred             CCceeEEEEccccccccchHh
Q psy11730        358 HSKFDIILTSETIYSVANYNK  378 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~~~  378 (496)
                      .. +|+|+...++|++++.+.
T Consensus       157 P~-~D~~~l~~vLh~~~d~~~  176 (241)
T PF00891_consen  157 PV-ADVYLLRHVLHDWSDEDC  176 (241)
T ss_dssp             SS-ESEEEEESSGGGS-HHHH
T ss_pred             cc-ccceeeehhhhhcchHHH
Confidence            34 999999999999976554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.52  E-value=0.00016  Score=72.87  Aligned_cols=90  Identities=19%  Similarity=0.129  Sum_probs=71.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      .|..|||+.||.|.+++.+|+.|...|+++|+||.+++.++++...+.  ....+..+++|..++.... +.+|.|+++.
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~~~-~~aDrIim~~  264 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAPEL-GVADRIIMGL  264 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhhcc-ccCCEEEeCC
Confidence            488999999999999999999999779999999999999887654433  2233889999998887642 8899999988


Q ss_pred             ccccccchHhHhh
Q psy11730        369 TIYSVANYNKLLT  381 (496)
Q Consensus       369 ~l~~~~~~~~~~~  381 (496)
                      +-....-++..+.
T Consensus       265 p~~a~~fl~~A~~  277 (341)
T COG2520         265 PKSAHEFLPLALE  277 (341)
T ss_pred             CCcchhhHHHHHH
Confidence            8654433444443

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.51  E-value=0.00012  Score=69.25  Aligned_cols=76  Identities=21%  Similarity=0.303  Sum_probs=61.3

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      +++++|||+|.|..++.+|-..+ .+|+-+|....-+.+.+.-..+.   +.+|++++++.+|++...... ||+|+|-.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---~L~nv~i~~~RaE~~~~~~~~-~D~vtsRA  143 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---GLENVEIVHGRAEEFGQEKKQ-YDVVTSRA  143 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---CCCCeEEehhhHhhccccccc-CcEEEeeh
Confidence            68999999999999999996555 67999999998888776554443   478999999999998753222 99999854


Q ss_pred             c
Q psy11730        369 T  369 (496)
Q Consensus       369 ~  369 (496)
                      +
T Consensus       144 v  144 (215)
T COG0357         144 V  144 (215)
T ss_pred             c
Confidence            3

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.00031  Score=67.28  Aligned_cols=85  Identities=16%  Similarity=0.211  Sum_probs=66.3

Q ss_pred             HHHhCCC-CCCCeEEEecCcCCHHHHHHHH-ccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        281 FIKDNVA-VDKLSVLDVGCGAGLLGLYTLM-NGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       281 ~l~~~~~-~~~~~VLDlGcGtG~~~~~la~-~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      +|....+ .+|.+|||.|.|+|.++.+|+. .++ ++|+..|+-++.++.|+++....  +...++++..+|+.+...  
T Consensus        85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~d~v~~~~~Dv~~~~~--  160 (256)
T COG2519          85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGDRVTLKLGDVREGID--  160 (256)
T ss_pred             HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--ccccceEEEecccccccc--
Confidence            3444444 4589999999999999999995 455 89999999999999999876543  234448889999887665  


Q ss_pred             CCceeEEEEccc
Q psy11730        358 HSKFDIILTSET  369 (496)
Q Consensus       358 ~~~fD~Ii~~~~  369 (496)
                      ...||.|+...+
T Consensus       161 ~~~vDav~LDmp  172 (256)
T COG2519         161 EEDVDAVFLDLP  172 (256)
T ss_pred             ccccCEEEEcCC
Confidence            348999998643

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.49  E-value=0.00011  Score=66.70  Aligned_cols=73  Identities=15%  Similarity=0.153  Sum_probs=59.4

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .....+.|||+|+|.++..++.. +.+|++|+.++.-...|.++..   .....|+.++.+|+....+   +..|+|+|.
T Consensus        31 va~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~---v~g~~n~evv~gDA~~y~f---e~ADvvicE  103 (252)
T COG4076          31 VAEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLH---VPGDVNWEVVVGDARDYDF---ENADVVICE  103 (252)
T ss_pred             HhhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCC---CCCCcceEEEecccccccc---cccceeHHH
Confidence            34578999999999999995554 8899999999999998887641   2357899999999887764   568898884

>PRK10742 putative methyltransferase; Provisional

Probab=97.46  E-value=0.0002  Score=68.75  Aligned_cols=81  Identities=15%  Similarity=0.073  Sum_probs=64.1

Q ss_pred             eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccc---c-CC--CCceEEEecccCCccccCCCceeEEE
Q psy11730        292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN---T-DN--LEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~---~-~~--~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      +|||+-+|+|..++.++..|.. |+++|-|+.+....+.......   . ..  ..+++++++|..+.......+||+|+
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY  169 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence            8999999999999999999876 9999999999887765543311   0 11  25789999997776544345899999


Q ss_pred             Eccccccc
Q psy11730        366 TSETIYSV  373 (496)
Q Consensus       366 ~~~~l~~~  373 (496)
                      +.+++.+-
T Consensus       170 lDPMfp~~  177 (250)
T PRK10742        170 LDPMFPHK  177 (250)
T ss_pred             ECCCCCCC
Confidence            99998885

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.44  E-value=0.00018  Score=68.82  Aligned_cols=80  Identities=13%  Similarity=0.042  Sum_probs=66.2

Q ss_pred             CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--CCceeEEEEc
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--HSKFDIILTS  367 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~Ii~~  367 (496)
                      ..+||||||.|.+...+|+..+ ..++|||+....+..|.++....+   ..|+.+++.|+..+....  +++.|-|..+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~---l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~  126 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG---LKNLRLLCGDAVEVLDYLIPDGSLDKIYIN  126 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC---CCcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence            5899999999999999999988 789999999999988887764443   349999999988765432  4599999998


Q ss_pred             cccccc
Q psy11730        368 ETIYSV  373 (496)
Q Consensus       368 ~~l~~~  373 (496)
                      .+=-|.
T Consensus       127 FPDPWp  132 (227)
T COG0220         127 FPDPWP  132 (227)
T ss_pred             CCCCCC
Confidence            886666

>PLN02823 spermine synthase

Probab=97.39  E-value=0.00053  Score=69.62  Aligned_cols=79  Identities=19%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ..++||.||+|.|..+..+++.. ..+|+.+|+++++++.|++...... ....++++++.+|.........++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            56799999999999999988854 4789999999999999987754321 123579999999987765444578999999


Q ss_pred             c
Q psy11730        367 S  367 (496)
Q Consensus       367 ~  367 (496)
                      .
T Consensus       183 D  183 (336)
T PLN02823        183 D  183 (336)
T ss_pred             c
Confidence            6

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.36  E-value=0.00071  Score=68.83  Aligned_cols=93  Identities=15%  Similarity=0.149  Sum_probs=73.4

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCC----------------------------------------eE
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAA----------------------------------------HV  315 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~----------------------------------------~v  315 (496)
                      .|+.-|....+ ..+..++|==||+|.+.+.+|..+..                                        .+
T Consensus       178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~  257 (381)
T COG0116         178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII  257 (381)
T ss_pred             HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence            34444444433 44679999999999999998877641                                        47


Q ss_pred             EEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcccccc
Q psy11730        316 SFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       316 ~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~  372 (496)
                      +|+|+++.+++.|+.++..  .+...-|+|.++|+..+.... +.+|+||||+|+--
T Consensus       258 ~G~Did~r~i~~Ak~NA~~--AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGe  311 (381)
T COG0116         258 YGSDIDPRHIEGAKANARA--AGVGDLIEFKQADATDLKEPL-EEYGVVISNPPYGE  311 (381)
T ss_pred             EEecCCHHHHHHHHHHHHh--cCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCcch
Confidence            8999999999999987643  346778999999999988754 89999999999753

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.36  E-value=0.00028  Score=62.64  Aligned_cols=80  Identities=23%  Similarity=0.265  Sum_probs=56.5

Q ss_pred             CCCCeEEEecCcCCHHHHHHHH-----ccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCcee
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLM-----NGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFD  362 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~-----~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD  362 (496)
                      .....|+|+|||-|.++..|+.     ....+|+|||.++..++.+.++..........++.+..++..+...  ....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  101 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS--SDPPD  101 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc--cCCCe
Confidence            3567999999999999999998     6567999999999999988877654432223556666665544322  34555


Q ss_pred             EEEEccc
Q psy11730        363 IILTSET  369 (496)
Q Consensus       363 ~Ii~~~~  369 (496)
                      ++++-.+
T Consensus       102 ~~vgLHa  108 (141)
T PF13679_consen  102 ILVGLHA  108 (141)
T ss_pred             EEEEeec
Confidence            6665433

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.35  E-value=0.0005  Score=68.99  Aligned_cols=91  Identities=20%  Similarity=0.166  Sum_probs=70.6

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEec-ccCCcc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHG-DWGSLS  354 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~-d~~~~~  354 (496)
                      .|++.+.+.... .|..|||=-||||.+.+.+.-.| .+++|+|++..|+.-|+.+....+   .....++.. |+..++
T Consensus       184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~~lp  259 (347)
T COG1041         184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDATNLP  259 (347)
T ss_pred             HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccccCC
Confidence            566777666554 48899999999999999955555 589999999999999887764443   456666666 999888


Q ss_pred             ccCCCceeEEEEcccccc
Q psy11730        355 AVIHSKFDIILTSETIYS  372 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~  372 (496)
                      .. ...+|.|++.+++--
T Consensus       260 l~-~~~vdaIatDPPYGr  276 (347)
T COG1041         260 LR-DNSVDAIATDPPYGR  276 (347)
T ss_pred             CC-CCccceEEecCCCCc
Confidence            54 457999999988643

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.33  E-value=0.00029  Score=68.36  Aligned_cols=78  Identities=19%  Similarity=0.159  Sum_probs=61.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC------CCc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI------HSK  360 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~  360 (496)
                      +.++|||||+++|+-++.+|..-+  .+|+.+|.+++..+.|++.....  +...+|+++.+++.+.....      .++
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            577999999999999999987532  68999999999999888765443  34579999999987754321      268


Q ss_pred             eeEEEEcc
Q psy11730        361 FDIILTSE  368 (496)
Q Consensus       361 fD~Ii~~~  368 (496)
                      ||+|+...
T Consensus       157 fD~iFiDa  164 (247)
T PLN02589        157 FDFIFVDA  164 (247)
T ss_pred             ccEEEecC
Confidence            99999953

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.31  E-value=0.00063  Score=63.56  Aligned_cols=109  Identities=16%  Similarity=0.095  Sum_probs=64.9

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCce-EEEecccCCccc
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKC-KFYHGDWGSLSA  355 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v-~~~~~d~~~~~~  355 (496)
                      +++.|.+...-.+.+|||||||||.++..+|+..+ -+....|+++..............   ..|+ ..+..|+.+..-
T Consensus        14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~---~~Nv~~P~~lDv~~~~w   90 (204)
T PF06080_consen   14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG---LPNVRPPLALDVSAPPW   90 (204)
T ss_pred             HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC---CcccCCCeEeecCCCCC
Confidence            45555555444444799999999999999999877 577788988877533222111111   1111 112333332211


Q ss_pred             c-------CCCceeEEEEcccccccc--chHhHhhe--eeecCCC
Q psy11730        356 V-------IHSKFDIILTSETIYSVA--NYNKLLTV--WCLFPTH  389 (496)
Q Consensus       356 ~-------~~~~fD~Ii~~~~l~~~~--~~~~~~~~--~~l~p~~  389 (496)
                      .       ....||.|++..++|-.+  ..+.+|+.  ..|.|++
T Consensus        91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG  135 (204)
T PF06080_consen   91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGG  135 (204)
T ss_pred             ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCC
Confidence            1       246899999999998884  44556654  2444443

The function of this family is unknown.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.31  E-value=0.00032  Score=70.75  Aligned_cols=96  Identities=19%  Similarity=0.242  Sum_probs=60.2

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHc--------cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMN--------GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH  347 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~--------~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~  347 (496)
                      .+++++.+.... .+.+|||-+||+|.+...+...        ....++|+|+++.++..|+.+....+ ....+..+..
T Consensus        33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~-~~~~~~~i~~  111 (311)
T PF02384_consen   33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG-IDNSNINIIQ  111 (311)
T ss_dssp             HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT-HHCBGCEEEE
T ss_pred             HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc-cccccccccc
Confidence            344445444443 4668999999999999987763        44789999999999988775432211 1233445777


Q ss_pred             cccCCccccC-CCceeEEEEccccccc
Q psy11730        348 GDWGSLSAVI-HSKFDIILTSETIYSV  373 (496)
Q Consensus       348 ~d~~~~~~~~-~~~fD~Ii~~~~l~~~  373 (496)
                      +|....+... ...||+|++++|+-..
T Consensus       112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  112 GDSLENDKFIKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             S-TTTSHSCTST--EEEEEEE--CTCE
T ss_pred             cccccccccccccccccccCCCCcccc
Confidence            7755444332 4689999999998776

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.29  E-value=0.00023  Score=66.83  Aligned_cols=101  Identities=22%  Similarity=0.182  Sum_probs=74.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~  367 (496)
                      .|.+|||.+.|-|+.++.++++|+.+|+-++.++..++.|+.+-.-.+.. ...+.++.+|..++.... +++||+|+-.
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~-~~~i~iilGD~~e~V~~~~D~sfDaIiHD  212 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF-EIAIKIILGDAYEVVKDFDDESFDAIIHD  212 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc-ccccEEecccHHHHHhcCCccccceEeeC
Confidence            58999999999999999999999999999999999999887654333322 237899999988765443 6789999987


Q ss_pred             cccccccc-h--HhHhhe--eeecCCCC
Q psy11730        368 ETIYSVAN-Y--NKLLTV--WCLFPTHT  390 (496)
Q Consensus       368 ~~l~~~~~-~--~~~~~~--~~l~p~~~  390 (496)
                      ++=....- +  +.+..+  ++|.|++.
T Consensus       213 PPRfS~AgeLYseefY~El~RiLkrgGr  240 (287)
T COG2521         213 PPRFSLAGELYSEEFYRELYRILKRGGR  240 (287)
T ss_pred             CCccchhhhHhHHHHHHHHHHHcCcCCc
Confidence            76444322 0  112222  26777775

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.25  E-value=0.00045  Score=61.01  Aligned_cols=58  Identities=28%  Similarity=0.276  Sum_probs=46.2

Q ss_pred             eEEEecCcCCHHHHHHHHccCC-eEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC
Q psy11730        292 SVLDVGCGAGLLGLYTLMNGAA-HVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS  352 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~~~~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~  352 (496)
                      .|||||||.|.++..+++.++. +|+++|+++.+++.++++...++   ..++.++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~---~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN---LPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEEeeeeC
Confidence            4899999999999999988874 89999999999998887643322   3457777776554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1661|consensus

Probab=97.24  E-value=0.0012  Score=61.19  Aligned_cols=121  Identities=20%  Similarity=0.091  Sum_probs=79.3

Q ss_pred             ccCceeeecchHHHHHHHHhCCC---CCCCeEEEecCcCCHHHHHHHHc-cC--CeEEEEeCCHHHHHHhcCcccccc--
Q psy11730        265 YEGGYKIWECTFDLLNFIKDNVA---VDKLSVLDVGCGAGLLGLYTLMN-GA--AHVSFQDYNQEVIESLTLPNILMN--  336 (496)
Q Consensus       265 ~~~~~~~~~~~~~l~~~l~~~~~---~~~~~VLDlGcGtG~~~~~la~~-~~--~~v~giD~s~~~i~~a~~~~~~~~--  336 (496)
                      ...||.+..++..+-..+.+.+.   .+|-+.||+|+|||+++..++.. +.  ..++|||.-++.++.++++..+.-  
T Consensus        55 q~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~  134 (237)
T KOG1661|consen   55 QKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITT  134 (237)
T ss_pred             cccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccC
Confidence            33455555555555444444432   46889999999999999998853 33  234999999999999887743221  


Q ss_pred             -----cCCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhheeeecCCCC
Q psy11730        337 -----TDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHT  390 (496)
Q Consensus       337 -----~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~~  390 (496)
                           .....++.++.+|....... ..+||.|.+.....  ..++.+++  .|.|++.
T Consensus       135 ~e~~~~~~~~~l~ivvGDgr~g~~e-~a~YDaIhvGAaa~--~~pq~l~d--qL~~gGr  188 (237)
T KOG1661|consen  135 SESSSKLKRGELSIVVGDGRKGYAE-QAPYDAIHVGAAAS--ELPQELLD--QLKPGGR  188 (237)
T ss_pred             chhhhhhccCceEEEeCCccccCCc-cCCcceEEEccCcc--ccHHHHHH--hhccCCe
Confidence                 12346788888887765543 57999999974432  34555555  3445443

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.23  E-value=0.0011  Score=63.78  Aligned_cols=86  Identities=21%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe-cccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH-GDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ...++||||+|.|..+..++. ...+|+++|.|..|....+++..          +++. .+|.+.    +.+||+|.|-
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~kg~----------~vl~~~~w~~~----~~~fDvIscL  158 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKKGF----------TVLDIDDWQQT----DFKFDVISCL  158 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhCCC----------eEEehhhhhcc----CCceEEEeeh
Confidence            456899999999999999765 45679999999999988777642          2222 223321    4689999999


Q ss_pred             cccccccchHhHhhe--eeecCCC
Q psy11730        368 ETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      .++-.-.++..+++.  ..+.|.|
T Consensus       159 NvLDRc~~P~~LL~~i~~~l~p~G  182 (265)
T PF05219_consen  159 NVLDRCDRPLTLLRDIRRALKPNG  182 (265)
T ss_pred             hhhhccCCHHHHHHHHHHHhCCCC
Confidence            999988888888875  2566644

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.18  E-value=0.0019  Score=64.87  Aligned_cols=89  Identities=13%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             cchHHHHHHHHhCC--------CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceE
Q psy11730        273 ECTFDLLNFIKDNV--------AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCK  344 (496)
Q Consensus       273 ~~~~~l~~~l~~~~--------~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~  344 (496)
                      .+.+.|.+.+....        ..+|.++|||||++|.++..|+++|. .|+|||.++ |.....         ..++|.
T Consensus       187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~L~---------~~~~V~  255 (357)
T PRK11760        187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQSLM---------DTGQVE  255 (357)
T ss_pred             hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHhhh---------CCCCEE
Confidence            34556666655443        24688999999999999999999987 899999554 333222         356788


Q ss_pred             EEecccCCccccCCCceeEEEEccccccc
Q psy11730        345 FYHGDWGSLSAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       345 ~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .+.+|.-..... .+.+|.|+|.-+.+..
T Consensus       256 h~~~d~fr~~p~-~~~vDwvVcDmve~P~  283 (357)
T PRK11760        256 HLRADGFKFRPP-RKNVDWLVCDMVEKPA  283 (357)
T ss_pred             EEeccCcccCCC-CCCCCEEEEecccCHH
Confidence            888886655432 5789999998664443

>KOG2899|consensus

Probab=97.16  E-value=0.00097  Score=63.11  Aligned_cols=45  Identities=22%  Similarity=0.373  Sum_probs=40.1

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPN  332 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~  332 (496)
                      ..++.+|||||-+|.+++.+|+. +...|.|+|+.+..|..|+++.
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~  102 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEI  102 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhc
Confidence            46789999999999999999985 5578999999999999998874

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.13  E-value=0.0013  Score=65.30  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             CCeEEEecCcCC-HHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC-c---cccCCCceeEE
Q psy11730        290 KLSVLDVGCGAG-LLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS-L---SAVIHSKFDII  364 (496)
Q Consensus       290 ~~~VLDlGcGtG-~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~-~---~~~~~~~fD~I  364 (496)
                      .-++||||||.- .+.+..++....+++|+|+++..++.|+++. ..|.....+|++....-.. +   .....+.||+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv-~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENV-ERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHH-HHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHH-HhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            458999999975 5566666767789999999999999998765 3443467788887653222 1   11124689999


Q ss_pred             EEccccccccc
Q psy11730        365 LTSETIYSVAN  375 (496)
Q Consensus       365 i~~~~l~~~~~  375 (496)
                      +|++++|.-.+
T Consensus       182 mCNPPFy~s~~  192 (299)
T PF05971_consen  182 MCNPPFYSSQE  192 (299)
T ss_dssp             EE-----SS--
T ss_pred             ecCCccccChh
Confidence            99999987643

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.07  E-value=0.00081  Score=72.87  Aligned_cols=82  Identities=18%  Similarity=0.185  Sum_probs=55.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC---------CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc----cc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA---------AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL----SA  355 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~---------~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~----~~  355 (496)
                      .+.+|||.|||+|.+...++....         ..++|+|+++.++..++.+....+   ...+.+...|....    ..
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~---~~~~~i~~~d~l~~~~~~~~  107 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA---LLEINVINFNSLSYVLLNIE  107 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC---CCCceeeecccccccccccc
Confidence            346899999999999999876432         568999999999998876542221   11233444442211    11


Q ss_pred             cCCCceeEEEEccccccc
Q psy11730        356 VIHSKFDIILTSETIYSV  373 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~  373 (496)
                      ...+.||+|++|+|+--.
T Consensus       108 ~~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987       108 SYLDLFDIVITNPPYGRL  125 (524)
T ss_pred             cccCcccEEEeCCCcccc
Confidence            113589999999999865

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.04  E-value=0.00096  Score=66.19  Aligned_cols=99  Identities=14%  Similarity=0.107  Sum_probs=66.8

Q ss_pred             CeEEEecCcCCHH----HHHHHHcc-----CCeEEEEeCCHHHHHHhcCcccc---------------------------
Q psy11730        291 LSVLDVGCGAGLL----GLYTLMNG-----AAHVSFQDYNQEVIESLTLPNIL---------------------------  334 (496)
Q Consensus       291 ~~VLDlGcGtG~~----~~~la~~~-----~~~v~giD~s~~~i~~a~~~~~~---------------------------  334 (496)
                      -+|+..||+||-=    ++.+.+..     .-+|+|+|+|+.+++.|++-.-.                           
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~  196 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV  196 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence            4899999999953    33333322     24799999999999998865211                           


Q ss_pred             -cccCCCCceEEEecccCCccccCCCceeEEEEcccccccc--chHhHhhee--eecCCC
Q psy11730        335 -MNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVA--NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       335 -~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~--~~~~~~~~~--~l~p~~  389 (496)
                       ........|+|...|+.+.+....+.||+|+|..++.|++  ....++...  .|.|+|
T Consensus       197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG  256 (287)
T PRK10611        197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDG  256 (287)
T ss_pred             EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCc
Confidence             0011225788999998774433357899999999999984  345555542  566665

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.00  E-value=0.00088  Score=63.23  Aligned_cols=100  Identities=17%  Similarity=0.171  Sum_probs=56.3

Q ss_pred             HHHHhCCCCC-CCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccc------cCCCCceEEEecccC
Q psy11730        280 NFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMN------TDNLEKCKFYHGDWG  351 (496)
Q Consensus       280 ~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~------~~~~~~v~~~~~d~~  351 (496)
                      ..+.+...+. +..++|||||.|...+.+|.. +..+++|||+.+...+.|........      .....++.+.++|+.
T Consensus        32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl  111 (205)
T PF08123_consen   32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL  111 (205)
T ss_dssp             HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred             HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence            3333444444 779999999999999887754 44779999999998877654321111      123568888888877


Q ss_pred             CccccC--CCceeEEEEccccccccchHhH
Q psy11730        352 SLSAVI--HSKFDIILTSETIYSVANYNKL  379 (496)
Q Consensus       352 ~~~~~~--~~~fD~Ii~~~~l~~~~~~~~~  379 (496)
                      +.....  -...|+|+++.....-+-...+
T Consensus       112 ~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L  141 (205)
T PF08123_consen  112 DPDFVKDIWSDADVVFVNNTCFDPDLNLAL  141 (205)
T ss_dssp             THHHHHHHGHC-SEEEE--TTT-HHHHHHH
T ss_pred             ccHhHhhhhcCCCEEEEeccccCHHHHHHH
Confidence            643211  1468999998876554433333

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.96  E-value=0.0024  Score=63.14  Aligned_cols=80  Identities=18%  Similarity=0.107  Sum_probs=66.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCC-CCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDN-LEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ..++||-||-|.|..+..+++... .+++.+|++++.++.+++....-..+. .++++++..|.-+........||+|++
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence            347999999999999999998875 899999999999999999876654333 489999999988776643458999998


Q ss_pred             cc
Q psy11730        367 SE  368 (496)
Q Consensus       367 ~~  368 (496)
                      ..
T Consensus       156 D~  157 (282)
T COG0421         156 DS  157 (282)
T ss_pred             cC
Confidence            43

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.92  E-value=0.0023  Score=60.80  Aligned_cols=95  Identities=19%  Similarity=0.152  Sum_probs=67.6

Q ss_pred             ecchHHHHHHHHhC-CCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEe-cc
Q psy11730        272 WECTFDLLNFIKDN-VAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYH-GD  349 (496)
Q Consensus       272 ~~~~~~l~~~l~~~-~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~-~d  349 (496)
                      ...++.|...+... +.++|+.+||||+-||.++..+.++|+++|+|+|..-.++..--+.        .+++..+. .+
T Consensus        61 SRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN  132 (245)
T COG1189          61 SRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN--------DPRVIVLERTN  132 (245)
T ss_pred             ccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc--------CCcEEEEecCC
Confidence            44567777777775 4678999999999999999999999999999999998777653222        23333332 33


Q ss_pred             cCCcccc-CCCceeEEEEcccccccc
Q psy11730        350 WGSLSAV-IHSKFDIILTSETIYSVA  374 (496)
Q Consensus       350 ~~~~~~~-~~~~fD~Ii~~~~l~~~~  374 (496)
                      +..+... ..+..|+|++.-++..+.
T Consensus       133 ~r~l~~~~~~~~~d~~v~DvSFISL~  158 (245)
T COG1189         133 VRYLTPEDFTEKPDLIVIDVSFISLK  158 (245)
T ss_pred             hhhCCHHHcccCCCeEEEEeehhhHH
Confidence            4433321 134688999988777663

>KOG2793|consensus

Probab=96.87  E-value=0.0031  Score=60.85  Aligned_cols=115  Identities=22%  Similarity=0.335  Sum_probs=76.7

Q ss_pred             ceeeecchHHHHHHHHhCCC-------CC-----CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHH--hcCccc
Q psy11730        268 GYKIWECTFDLLNFIKDNVA-------VD-----KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIES--LTLPNI  333 (496)
Q Consensus       268 ~~~~~~~~~~l~~~l~~~~~-------~~-----~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~--a~~~~~  333 (496)
                      ...+|...-.+++.+.....       +.     ..+|||+|+|+|.-++.++......|.-.|...-+...  ....+.
T Consensus        53 ~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~  132 (248)
T KOG2793|consen   53 SAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNN  132 (248)
T ss_pred             eeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhh
Confidence            34457777666666655432       22     33599999999999999888788889888876655432  222222


Q ss_pred             ccccCCCCceEEEecccCCccccC--CCc-eeEEEEccccccccchHhHhhe
Q psy11730        334 LMNTDNLEKCKFYHGDWGSLSAVI--HSK-FDIILTSETIYSVANYNKLLTV  382 (496)
Q Consensus       334 ~~~~~~~~~v~~~~~d~~~~~~~~--~~~-fD~Ii~~~~l~~~~~~~~~~~~  382 (496)
                      .........+.+...+|...+...  ... ||+|++.+++|+....+.+.+.
T Consensus       133 ~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~t  184 (248)
T KOG2793|consen  133 IALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKT  184 (248)
T ss_pred             hhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHH
Confidence            222223347777777777654321  234 9999999999999888887765

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.72  E-value=0.0019  Score=69.47  Aligned_cols=82  Identities=10%  Similarity=-0.016  Sum_probs=64.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-CCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-IHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~Ii~  366 (496)
                      .+..+||||||.|.+...+|+..+ ..++|+|++...+..+.++....   +..|+.++..|+..+... .++++|.|+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~---~l~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ---NITNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            466899999999999999999888 68999999999888876654332   367888888887644322 2578999998


Q ss_pred             ccccccc
Q psy11730        367 SETIYSV  373 (496)
Q Consensus       367 ~~~l~~~  373 (496)
                      +.+=-|.
T Consensus       424 ~FPDPWp  430 (506)
T PRK01544        424 LFPDPWI  430 (506)
T ss_pred             ECCCCCC
Confidence            8776665

>KOG1709|consensus

Probab=96.72  E-value=0.0054  Score=57.16  Aligned_cols=110  Identities=17%  Similarity=0.225  Sum_probs=83.1

Q ss_pred             ecchHH--HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        272 WECTFD--LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       272 ~~~~~~--l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      |+..++  +++.+.    .+|.+||+||-|.|+...++.++.+..-+-|+.+++.+...+....    ....||.++.+.
T Consensus        86 WEtpiMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw----~ek~nViil~g~  157 (271)
T KOG1709|consen   86 WETPIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGW----REKENVIILEGR  157 (271)
T ss_pred             hhhHHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccc----ccccceEEEecc
Confidence            766442  344443    6899999999999999999888888888899999999998887653    346799999999


Q ss_pred             cCCcccc-CCCceeEEEEccccccccchHhHhhe--eeecCCC
Q psy11730        350 WGSLSAV-IHSKFDIILTSETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       350 ~~~~~~~-~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      |++.... +++.||-|+-.---.+..+...+.+.  ..|.|++
T Consensus       158 WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~g  200 (271)
T KOG1709|consen  158 WEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEG  200 (271)
T ss_pred             hHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCc
Confidence            9986543 36889999986655666666655553  3566664

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.54  E-value=0.0041  Score=60.52  Aligned_cols=82  Identities=18%  Similarity=0.179  Sum_probs=62.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCccccccc-CCCCceEEEecccCCccccCCC-ceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNT-DNLEKCKFYHGDWGSLSAVIHS-KFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~-~fD~I  364 (496)
                      .+.++||=||-|.|..+..+.+.. ..+|+.+|+++.+++.|++....... ...++++++.+|.........+ .||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            368899999999999999988776 48999999999999999876443222 2467999999998776654455 89999


Q ss_pred             EEccc
Q psy11730        365 LTSET  369 (496)
Q Consensus       365 i~~~~  369 (496)
                      +....
T Consensus       155 i~D~~  159 (246)
T PF01564_consen  155 IVDLT  159 (246)
T ss_dssp             EEESS
T ss_pred             EEeCC
Confidence            98443

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.51  E-value=0.012  Score=62.51  Aligned_cols=126  Identities=17%  Similarity=0.215  Sum_probs=87.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||++||.|.=+..++...  ...|+++|+++..+..++++....   +..|+.+...|...+.....+.||.|+
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~---G~~nv~v~~~D~~~~~~~~~~~fD~IL  188 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC---GVSNVALTHFDGRVFGAALPETFDAIL  188 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCchhhhhhhchhhcCeEE
Confidence            468899999999999999998754  268999999999998887665433   357888888888766544357899999


Q ss_pred             Eccccccc----cchHh------------------Hhhe-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcCC
Q psy11730        366 TSETIYSV----ANYNK------------------LLTV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPR  419 (496)
Q Consensus       366 ~~~~l~~~----~~~~~------------------~~~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (496)
                      ...+..-.    .+++.                  ++.. + .+.|+|.   ++|..-.....+....+.+|...++.
T Consensus       189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~---LVYSTCT~~~eENE~vV~~~L~~~~~  263 (470)
T PRK11933        189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGT---LVYSTCTLNREENQAVCLWLKETYPD  263 (470)
T ss_pred             EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcE---EEEECCCCCHHHHHHHHHHHHHHCCC
Confidence            75554411    22211                  1111 2 5566654   66666555555667778888777664

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.51  E-value=0.0022  Score=67.11  Aligned_cols=104  Identities=19%  Similarity=0.229  Sum_probs=64.4

Q ss_pred             hHHHHHHHHhCCCC--CC---CeEEEecCcCCHHHHHHHHccCCeEE--EEeCCHHHHHHhcCcccccccCCCCceEEEe
Q psy11730        275 TFDLLNFIKDNVAV--DK---LSVLDVGCGAGLLGLYTLMNGAAHVS--FQDYNQEVIESLTLPNILMNTDNLEKCKFYH  347 (496)
Q Consensus       275 ~~~l~~~l~~~~~~--~~---~~VLDlGcGtG~~~~~la~~~~~~v~--giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~  347 (496)
                      +..-++.|.+.+..  .+   +.+||+|||+|.++-+|..++...+.  .-|..+.++.+|.++.+-          .+.
T Consensus        98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvp----------a~~  167 (506)
T PF03141_consen   98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVP----------AMI  167 (506)
T ss_pred             HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcc----------hhh
Confidence            33345555555543  32   36899999999999999998874332  336677778777665311          111


Q ss_pred             cc--cCCccccCCCceeEEEEccccccccchHhHh-he--eeecCCC
Q psy11730        348 GD--WGSLSAVIHSKFDIILTSETIYSVANYNKLL-TV--WCLFPTH  389 (496)
Q Consensus       348 ~d--~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~-~~--~~l~p~~  389 (496)
                      +-  -..++++ ++.||+|.|..++......+.++ -+  ++|.|+|
T Consensus       168 ~~~~s~rLPfp-~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG  213 (506)
T PF03141_consen  168 GVLGSQRLPFP-SNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG  213 (506)
T ss_pred             hhhccccccCC-ccchhhhhcccccccchhcccceeehhhhhhccCc
Confidence            22  1234443 79999999988877664444332 22  4666665

; GO: 0008168 methyltransferase activity

>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily

Probab=96.50  E-value=0.002  Score=47.51  Aligned_cols=43  Identities=30%  Similarity=0.294  Sum_probs=32.4

Q ss_pred             cCCCCCCCchhhhcccCCCCCCCc-cceEecCCCCccccccCCCCC
Q psy11730        149 DYEVPIYFQDDLFQYAGEDKRPPY-RWFVMGPARSGTGIHIDPLGT  193 (496)
Q Consensus       149 d~~~P~~f~~d~~~~~~~~~~p~~-~w~~iG~~gs~T~lH~D~~~~  193 (496)
                      ...+|.  ..++++.+++....++ +|++||+.+|.|++|+|+++.
T Consensus         5 l~~lP~--~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~   48 (57)
T smart00558        5 LAKLPF--KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL   48 (57)
T ss_pred             hhhCCC--cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe
Confidence            345664  5567777765444444 999999999999999999884

Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).

>KOG2730|consensus

Probab=96.49  E-value=0.0029  Score=59.07  Aligned_cols=95  Identities=18%  Similarity=0.239  Sum_probs=68.4

Q ss_pred             ecchHHHHHHHHhCCC--CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        272 WECTFDLLNFIKDNVA--VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~--~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      |-.....+..|.....  .....|+|..||.|..++..|..++ .|++||+++.-+..|+.++...+  -..+|+|+++|
T Consensus        75 svTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYG--I~~rItFI~GD  151 (263)
T KOG2730|consen   75 SVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYG--VPDRITFICGD  151 (263)
T ss_pred             EeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeec--CCceeEEEech
Confidence            4445555555555432  2456899999999999999888876 79999999999999988765544  34599999999


Q ss_pred             cCCccccC---CCceeEEEEccc
Q psy11730        350 WGSLSAVI---HSKFDIILTSET  369 (496)
Q Consensus       350 ~~~~~~~~---~~~fD~Ii~~~~  369 (496)
                      +.++-..+   ...+|+|+.+++
T Consensus       152 ~ld~~~~lq~~K~~~~~vf~spp  174 (263)
T KOG2730|consen  152 FLDLASKLKADKIKYDCVFLSPP  174 (263)
T ss_pred             HHHHHHHHhhhhheeeeeecCCC
Confidence            88764322   123566666544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.46  E-value=0.0046  Score=61.18  Aligned_cols=97  Identities=14%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             hHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        275 TFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       275 ~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      ...++..|.... ....++|||+|||.|.-..++...  ...+++++|.|+.|++.++.-.....  .............
T Consensus        18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~--~~~~~~~~~~~~~   95 (274)
T PF09243_consen   18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP--NNRNAEWRRVLYR   95 (274)
T ss_pred             HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc--ccccchhhhhhhc
Confidence            334555555554 367889999999999877665543  34789999999999998765432111  1111111111111


Q ss_pred             CccccCCCceeEEEEccccccccc
Q psy11730        352 SLSAVIHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~~~  375 (496)
                      +...  ....|+|+++.+|..+++
T Consensus        96 ~~~~--~~~~DLvi~s~~L~EL~~  117 (274)
T PF09243_consen   96 DFLP--FPPDDLVIASYVLNELPS  117 (274)
T ss_pred             cccc--CCCCcEEEEehhhhcCCc
Confidence            1111  223499999999999977

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.34  E-value=0.0074  Score=59.80  Aligned_cols=75  Identities=16%  Similarity=0.138  Sum_probs=59.8

Q ss_pred             eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEEEcccc
Q psy11730        292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIILTSETI  370 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~~~l  370 (496)
                      +|+|+.||.|.+++.+...|...|.++|+++.+++..+.+..        + .++.+|+.++.... ...+|+|+..++.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~--------~-~~~~~Di~~~~~~~~~~~~D~l~~gpPC   72 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP--------N-KLIEGDITKIDEKDFIPDIDLLTGGFPC   72 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC--------C-CCccCccccCchhhcCCCCCEEEeCCCC
Confidence            689999999999999888898889999999999998776541        1 14667777765432 3579999999988


Q ss_pred             ccccc
Q psy11730        371 YSVAN  375 (496)
Q Consensus       371 ~~~~~  375 (496)
                      ..++.
T Consensus        73 q~fS~   77 (275)
T cd00315          73 QPFSI   77 (275)
T ss_pred             hhhhH
Confidence            87743

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.34  E-value=0.0089  Score=56.04  Aligned_cols=99  Identities=14%  Similarity=0.174  Sum_probs=55.5

Q ss_pred             CCeEEEecCcCCHHH----HHHHH---ccC---CeEEEEeCCHHHHHHhcCcccccc-----------------cC----
Q psy11730        290 KLSVLDVGCGAGLLG----LYTLM---NGA---AHVSFQDYNQEVIESLTLPNILMN-----------------TD----  338 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~----~~la~---~~~---~~v~giD~s~~~i~~a~~~~~~~~-----------------~~----  338 (496)
                      .-+|+-.||+||-=.    +.+.+   ...   -+|+|+|+|+.+++.|++-.-...                 .+    
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            348999999999533    33333   112   389999999999999876421111                 00    


Q ss_pred             ----CCCceEEEecccCCccccCCCceeEEEEccccccccch--HhHhhe--eeecCCC
Q psy11730        339 ----NLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANY--NKLLTV--WCLFPTH  389 (496)
Q Consensus       339 ----~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~--~~l~p~~  389 (496)
                          ...+|+|...|+.+ .....+.||+|+|-.++.++...  ..+++.  ..|.|+|
T Consensus       112 v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG  169 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGG  169 (196)
T ss_dssp             E-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEE
T ss_pred             EChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCC
Confidence                11488999999888 22226899999999999998544  334443  2455554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=96.24  E-value=0.003  Score=63.95  Aligned_cols=40  Identities=33%  Similarity=0.740  Sum_probs=30.6

Q ss_pred             chhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCCCC
Q psy11730        431 PLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTN  470 (496)
Q Consensus       431 p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~~  470 (496)
                      ..+++++|||+||+|.||||...+.+.|+.+|+.|...+.
T Consensus       175 ~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~  214 (319)
T PF08007_consen  175 VEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTW  214 (319)
T ss_dssp             SEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBH
T ss_pred             eEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCch
Confidence            4678999999999999999999999999999998776653

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.20  E-value=0.0092  Score=56.35  Aligned_cols=77  Identities=21%  Similarity=0.173  Sum_probs=55.0

Q ss_pred             EEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccc
Q psy11730        293 VLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       293 VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~  371 (496)
                      |.||||-=|.++.+|++.+. .+++++|+++..++.|+++....  +...++++..+|..+.... .+..|+|+..++--
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGG   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T-TTTEEEEE-SGGGG--G-GG---EEEEEEE-H
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCcccEEEEECCcccccCC-CCCCCEEEEecCCH
Confidence            68999999999999999998 67999999999999998776543  3567899999996543321 23478888766644


Q ss_pred             c
Q psy11730        372 S  372 (496)
Q Consensus       372 ~  372 (496)
                      .
T Consensus        78 ~   78 (205)
T PF04816_consen   78 E   78 (205)
T ss_dssp             H
T ss_pred             H
Confidence            3

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PHA01634 hypothetical protein

Probab=96.15  E-value=0.0069  Score=51.72  Aligned_cols=46  Identities=22%  Similarity=0.285  Sum_probs=42.4

Q ss_pred             CCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCc
Q psy11730        286 VAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP  331 (496)
Q Consensus       286 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~  331 (496)
                      +.+.+++|+|||.+.|..+++++.+|++.|++++.++......+..
T Consensus        25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een   70 (156)
T PHA01634         25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEV   70 (156)
T ss_pred             eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999888763

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.14  E-value=0.029  Score=48.29  Aligned_cols=84  Identities=25%  Similarity=0.264  Sum_probs=52.4

Q ss_pred             EEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC--ccccCCCceeEEEEcc
Q psy11730        293 VLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS--LSAVIHSKFDIILTSE  368 (496)
Q Consensus       293 VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~fD~Ii~~~  368 (496)
                      ++|+|||+|... .++....  ..++|+|+++.++..++..... .  ....+.+...+...  ++......||++.+..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A--GLGLVDFVVADALGGVLPFEDSASFDLVISLL  127 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c--CCCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence            999999999987 4344433  4799999999999884443311 1  11116778887765  3432114899994444


Q ss_pred             ccccccchHhHhh
Q psy11730        369 TIYSVANYNKLLT  381 (496)
Q Consensus       369 ~l~~~~~~~~~~~  381 (496)
                      .+++.. ....+.
T Consensus       128 ~~~~~~-~~~~~~  139 (257)
T COG0500         128 VLHLLP-PAKALR  139 (257)
T ss_pred             ehhcCC-HHHHHH
Confidence            444444 444443

>KOG2915|consensus

Probab=96.12  E-value=0.02  Score=55.29  Aligned_cols=83  Identities=17%  Similarity=0.053  Sum_probs=65.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~I  364 (496)
                      .+|..|||-|+|+|.++.++++.-+  ++++-.|+.+.-.+.|.+....-  +-..++++.+-|+....+.. ...+|.|
T Consensus       104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h--gi~~~vt~~hrDVc~~GF~~ks~~aDaV  181 (314)
T KOG2915|consen  104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH--GIGDNVTVTHRDVCGSGFLIKSLKADAV  181 (314)
T ss_pred             CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh--CCCcceEEEEeecccCCccccccccceE
Confidence            3688999999999999999988644  89999999998888887765433  35789999999988765543 4679999


Q ss_pred             EEcccccc
Q psy11730        365 LTSETIYS  372 (496)
Q Consensus       365 i~~~~l~~  372 (496)
                      +...+-.|
T Consensus       182 FLDlPaPw  189 (314)
T KOG2915|consen  182 FLDLPAPW  189 (314)
T ss_pred             EEcCCChh
Confidence            98665444

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.04  E-value=0.02  Score=56.20  Aligned_cols=99  Identities=16%  Similarity=0.224  Sum_probs=65.7

Q ss_pred             CCeEEEecCcCCH----HHHHHHHcc------CCeEEEEeCCHHHHHHhcCcccc-----cc------------c-----
Q psy11730        290 KLSVLDVGCGAGL----LGLYTLMNG------AAHVSFQDYNQEVIESLTLPNIL-----MN------------T-----  337 (496)
Q Consensus       290 ~~~VLDlGcGtG~----~~~~la~~~------~~~v~giD~s~~~i~~a~~~~~~-----~~------------~-----  337 (496)
                      .-+|+-+||+||-    +++.|.+.+      .-+|+|+|+|..+++.|+.-.-.     .+            .     
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            3489999999994    444444444      25799999999999998864322     11            0     


Q ss_pred             ----CCCCceEEEecccCCccccCCCceeEEEEccccccccch--HhHhhee--eecCCC
Q psy11730        338 ----DNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANY--NKLLTVW--CLFPTH  389 (496)
Q Consensus       338 ----~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~~--~l~p~~  389 (496)
                          .....|.|-..|+..-.. ..+.||+|+|-+++.++...  ..++...  .|.|+|
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG  235 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGG  235 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence                012477888888776553 26789999999998888543  3344431  444544

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.02  E-value=0.024  Score=53.12  Aligned_cols=87  Identities=16%  Similarity=0.266  Sum_probs=64.4

Q ss_pred             ceeeecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceE
Q psy11730        268 GYKIWECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCK  344 (496)
Q Consensus       268 ~~~~~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~  344 (496)
                      +|+ ..+++.|.+...+..-+. +..|+||||--|.++..+++...  ..|+|+|+.+--              ...+|.
T Consensus        24 gyR-SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~   88 (205)
T COG0293          24 GYR-SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVI   88 (205)
T ss_pred             ccc-chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCce
Confidence            444 567788888888875555 68999999999999999887655  349999988632              356799


Q ss_pred             EEecccCCcccc------CC-CceeEEEEccc
Q psy11730        345 FYHGDWGSLSAV------IH-SKFDIILTSET  369 (496)
Q Consensus       345 ~~~~d~~~~~~~------~~-~~fD~Ii~~~~  369 (496)
                      ++++|+..-...      .. ..+|+|+|..+
T Consensus        89 ~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~a  120 (205)
T COG0293          89 FLQGDITDEDTLEKLLEALGGAPVDVVLSDMA  120 (205)
T ss_pred             EEeeeccCccHHHHHHHHcCCCCcceEEecCC
Confidence            999997754332      12 34799998544

>KOG1331|consensus

Probab=96.00  E-value=0.0042  Score=60.47  Aligned_cols=117  Identities=20%  Similarity=0.149  Sum_probs=81.5

Q ss_pred             cCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEE
Q psy11730        266 EGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKF  345 (496)
Q Consensus       266 ~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~  345 (496)
                      .+.+..|+.....+...    + .+..++|+|||.|-++..   .....++|.|++...+.-+++.+.         ...
T Consensus        27 ~tr~~~Wp~v~qfl~~~----~-~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~---------~~~   89 (293)
T KOG1331|consen   27 ATRAAPWPMVRQFLDSQ----P-TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGG---------DNV   89 (293)
T ss_pred             ccccCccHHHHHHHhcc----C-CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCC---------cee
Confidence            34455577655333332    1 388999999999987543   244689999999999988876542         145


Q ss_pred             EecccCCccccCCCceeEEEEccccccccchHh---Hhhe--eeecCCCCCcccEEEeeccC
Q psy11730        346 YHGDWGSLSAVIHSKFDIILTSETIYSVANYNK---LLTV--WCLFPTHTPKDLLKVTSAEG  402 (496)
Q Consensus       346 ~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~---~~~~--~~l~p~~~~~~~~~~~~~~~  402 (496)
                      ..+|+..++.. ..+||.+++.-++||+.....   ++++  .++.|++..  ++++.+...
T Consensus        90 ~~ad~l~~p~~-~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~--lvyvwa~~q  148 (293)
T KOG1331|consen   90 CRADALKLPFR-EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNA--LVYVWALEQ  148 (293)
T ss_pred             ehhhhhcCCCC-CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCce--EEEEehhhc
Confidence            77888888776 689999999999999965443   3333  378887753  566655443

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.93  E-value=0.011  Score=56.61  Aligned_cols=82  Identities=17%  Similarity=0.126  Sum_probs=49.1

Q ss_pred             CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccccc-C-----CCCceEEEecccCCccccCCCceeEE
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT-D-----NLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~-~-----~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      .+|||.=||.|.-++.++..|. +|+++|-|+-+....+.-...... .     ...+++++++|..+.....+.+||+|
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV  155 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV  155 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence            3899999999999999988764 799999999886654422111111 1     12589999999888665447899999


Q ss_pred             EEccccccc
Q psy11730        365 LTSETIYSV  373 (496)
Q Consensus       365 i~~~~l~~~  373 (496)
                      ...+++.+-
T Consensus       156 Y~DPMFp~~  164 (234)
T PF04445_consen  156 YFDPMFPER  164 (234)
T ss_dssp             EE--S----
T ss_pred             EECCCCCCc
Confidence            999998774

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1269|consensus

Probab=95.90  E-value=0.0076  Score=61.76  Aligned_cols=98  Identities=23%  Similarity=0.198  Sum_probs=78.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      .+..++|+|||.|......+..+...++|+|+++..+..+...+....  ...+..++.+++...++. +..||.+.+.+
T Consensus       110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~--l~~k~~~~~~~~~~~~fe-dn~fd~v~~ld  186 (364)
T KOG1269|consen  110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY--LDNKCNFVVADFGKMPFE-DNTFDGVRFLE  186 (364)
T ss_pred             ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH--hhhhcceehhhhhcCCCC-ccccCcEEEEe
Confidence            455899999999999999999988999999999999888776654433  233444477777777665 78999999999


Q ss_pred             ccccccchHhHhhe--eeecCCC
Q psy11730        369 TIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       369 ~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      +..|.++...++++  ..+.|++
T Consensus       187 ~~~~~~~~~~~y~Ei~rv~kpGG  209 (364)
T KOG1269|consen  187 VVCHAPDLEKVYAEIYRVLKPGG  209 (364)
T ss_pred             ecccCCcHHHHHHHHhcccCCCc
Confidence            99999999999987  2555554

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=95.72  E-value=0.092  Score=49.70  Aligned_cols=93  Identities=14%  Similarity=0.112  Sum_probs=62.6

Q ss_pred             ceeeecchH-HHHHHHHhCC---CCC-CCeEEEecCcCCHHHHHHHHc-c-CCeEEEEeCCHHH----HHHhcCcccccc
Q psy11730        268 GYKIWECTF-DLLNFIKDNV---AVD-KLSVLDVGCGAGLLGLYTLMN-G-AAHVSFQDYNQEV----IESLTLPNILMN  336 (496)
Q Consensus       268 ~~~~~~~~~-~l~~~l~~~~---~~~-~~~VLDlGcGtG~~~~~la~~-~-~~~v~giD~s~~~----i~~a~~~~~~~~  336 (496)
                      .|+.|.--. .|+..|....   .++ |.+||-||..+|..-..++.. + .+.|+|++.|+..    +..|+++     
T Consensus        47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----  121 (229)
T PF01269_consen   47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----  121 (229)
T ss_dssp             EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----
T ss_pred             ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----
Confidence            688897744 5666666543   344 789999999999999998864 4 2789999999954    5555544     


Q ss_pred             cCCCCceEEEecccCCccccC--CCceeEEEEccc
Q psy11730        337 TDNLEKCKFYHGDWGSLSAVI--HSKFDIILTSET  369 (496)
Q Consensus       337 ~~~~~~v~~~~~d~~~~~~~~--~~~fD~Ii~~~~  369 (496)
                          .|+-.+..|+.....+.  -+.+|+|++.-+
T Consensus       122 ----~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa  152 (229)
T PF01269_consen  122 ----PNIIPILEDARHPEKYRMLVEMVDVIFQDVA  152 (229)
T ss_dssp             ----TTEEEEES-TTSGGGGTTTS--EEEEEEE-S
T ss_pred             ----CceeeeeccCCChHHhhcccccccEEEecCC
Confidence                47888889887655432  368999998644

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=95.67  E-value=0.034  Score=52.04  Aligned_cols=105  Identities=16%  Similarity=0.278  Sum_probs=58.1

Q ss_pred             ecchH--HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        272 WECTF--DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       272 ~~~~~--~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      ||..-  .++++|...  .++..|.|+|||-+.++..+.  ....|...|+-.                  .+-.+..+|
T Consensus        55 WP~nPvd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva------------------~n~~Vtacd  112 (219)
T PF05148_consen   55 WPVNPVDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVA------------------PNPRVTACD  112 (219)
T ss_dssp             SSS-HHHHHHHHHCTS---TTS-EEEES-TT-HHHHH----S---EEEEESS-------------------SSTTEEES-
T ss_pred             CCCCcHHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc--cCceEEEeeccC------------------CCCCEEEec
Confidence            76643  467777643  235689999999999986532  223588888753                  122357899


Q ss_pred             cCCccccCCCceeEEEEccccccccchHhHhhe--eeecCCCCCcccEEEeeccCCc
Q psy11730        350 WGSLSAVIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHTPKDLLKVTSAEGGK  404 (496)
Q Consensus       350 ~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~~~~~~~~~~~~~~~  404 (496)
                      +..+|.. +++.|++|+..+|--. |+..++.+  ++|.|+|    ++.+.....+.
T Consensus       113 ia~vPL~-~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G----~L~IAEV~SRf  163 (219)
T PF05148_consen  113 IANVPLE-DESVDVAVFCLSLMGT-NWPDFIREANRVLKPGG----ILKIAEVKSRF  163 (219)
T ss_dssp             TTS-S---TT-EEEEEEES---SS--HHHHHHHHHHHEEEEE----EEEEEEEGGG-
T ss_pred             CccCcCC-CCceeEEEEEhhhhCC-CcHHHHHHHHheeccCc----EEEEEEecccC
Confidence            9888876 7999999998777554 55555554  4677765    56666655443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.63  E-value=0.044  Score=52.43  Aligned_cols=111  Identities=16%  Similarity=0.242  Sum_probs=66.3

Q ss_pred             ccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCce
Q psy11730        265 YEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKC  343 (496)
Q Consensus       265 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v  343 (496)
                      +.-++.+.+.+..-+.++.+...+.|++||=|| ---..+++++.. .+++|+-+|+.+.++++.++.+...+   . ++
T Consensus        20 ~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g---l-~i   94 (243)
T PF01861_consen   20 LDQGYATPETTLRRAALMAERGDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG---L-PI   94 (243)
T ss_dssp             GT---B-HHHHHHHHHHHHHTT-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------E
T ss_pred             cccccccHHHHHHHHHHHHhcCcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC---C-ce
Confidence            344566688888889999999999999999999 445566666654 44899999999999999877664443   2 38


Q ss_pred             EEEecccCC-ccccCCCceeEEEEccccccccchHhHhh
Q psy11730        344 KFYHGDWGS-LSAVIHSKFDIILTSETIYSVANYNKLLT  381 (496)
Q Consensus       344 ~~~~~d~~~-~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~  381 (496)
                      +.++.|+.+ +|....+.||++++.++. ...-...++.
T Consensus        95 ~~~~~DlR~~LP~~~~~~fD~f~TDPPy-T~~G~~LFls  132 (243)
T PF01861_consen   95 EAVHYDLRDPLPEELRGKFDVFFTDPPY-TPEGLKLFLS  132 (243)
T ss_dssp             EEE---TTS---TTTSS-BSEEEE---S-SHHHHHHHHH
T ss_pred             EEEEecccccCCHHHhcCCCEEEeCCCC-CHHHHHHHHH
Confidence            889999775 455456899999998884 3333333443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG3045|consensus

Probab=95.58  E-value=0.04  Score=52.93  Aligned_cols=96  Identities=16%  Similarity=0.231  Sum_probs=65.4

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      +++.|...  .....|.|+|||-+.++.    .-...|+..|+-+                  .+-+++.+|+.+++.. 
T Consensus       171 ii~~ik~r--~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a------------------~~~~V~~cDm~~vPl~-  225 (325)
T KOG3045|consen  171 IIRKIKRR--PKNIVIADFGCGEAKIAS----SERHKVHSFDLVA------------------VNERVIACDMRNVPLE-  225 (325)
T ss_pred             HHHHHHhC--cCceEEEecccchhhhhh----ccccceeeeeeec------------------CCCceeeccccCCcCc-
Confidence            45555543  245689999999999865    3335688888542                  2345688899998876 


Q ss_pred             CCceeEEEEccccccccchHhHhhe--eeecCCCCCcccEEEeeccCC
Q psy11730        358 HSKFDIILTSETIYSVANYNKLLTV--WCLFPTHTPKDLLKVTSAEGG  403 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~~~~~~~~~~~~~~  403 (496)
                      +++.|++++..++. -.|+..++++  ++|.|+|    ++++..+...
T Consensus       226 d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG----~l~IAEv~SR  268 (325)
T KOG3045|consen  226 DESVDVAVFCLSLM-GTNLADFIKEANRILKPGG----LLYIAEVKSR  268 (325)
T ss_pred             cCcccEEEeeHhhh-cccHHHHHHHHHHHhccCc----eEEEEehhhh
Confidence            79999998866653 2566777766  4677766    5777665543

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.53  E-value=0.017  Score=53.19  Aligned_cols=51  Identities=24%  Similarity=0.294  Sum_probs=40.4

Q ss_pred             cchHHHHHHHHhCCCC---CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHH
Q psy11730        273 ECTFDLLNFIKDNVAV---DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQE  323 (496)
Q Consensus       273 ~~~~~l~~~l~~~~~~---~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~  323 (496)
                      .+.+.|.+.+....-+   .+.+||||||+.|.++..+++.+  ...|+|+|+.+.
T Consensus         4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            3456777777776523   34799999999999999999988  589999999876

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=95.41  E-value=0.053  Score=53.22  Aligned_cols=88  Identities=17%  Similarity=0.190  Sum_probs=67.7

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC---CeEEEEeCCHHHHHHhcCcccccccCCCCce-EEEecccCCcccc--CCCceeE
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA---AHVSFQDYNQEVIESLTLPNILMNTDNLEKC-KFYHGDWGSLSAV--IHSKFDI  363 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v-~~~~~d~~~~~~~--~~~~fD~  363 (496)
                      .-+||||.||.|..-+-+....+   ..|...|+|+.-++..++.....+   ..++ +|.++|+-+....  .....++
T Consensus       136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g---L~~i~~f~~~dAfd~~~l~~l~p~P~l  212 (311)
T PF12147_consen  136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG---LEDIARFEQGDAFDRDSLAALDPAPTL  212 (311)
T ss_pred             ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC---CccceEEEecCCCCHhHhhccCCCCCE
Confidence            45999999999999998776544   689999999999998776554332   4455 9999997765332  2456899


Q ss_pred             EEEccccccccchHhHh
Q psy11730        364 ILTSETIYSVANYNKLL  380 (496)
Q Consensus       364 Ii~~~~l~~~~~~~~~~  380 (496)
                      ++.+..++.++|-+.+.
T Consensus       213 ~iVsGL~ElF~Dn~lv~  229 (311)
T PF12147_consen  213 AIVSGLYELFPDNDLVR  229 (311)
T ss_pred             EEEecchhhCCcHHHHH
Confidence            99999999998866544

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=95.25  E-value=0.044  Score=55.04  Aligned_cols=89  Identities=17%  Similarity=0.142  Sum_probs=68.1

Q ss_pred             CCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCc----ccccccCCCCceEEEecccCCccccCCCceeEE
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLP----NILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~----~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      ..+||=+|-|-|.-...+.+.. ..+|+-+|++|+|++.++++    ....+....++++++..|+-+....-.+.||+|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            4589999999999999988876 58999999999999998854    222334567899999999877665445789999


Q ss_pred             EEccccccccchHh
Q psy11730        365 LTSETIYSVANYNK  378 (496)
Q Consensus       365 i~~~~l~~~~~~~~  378 (496)
                      |...+=...+...+
T Consensus       370 IVDl~DP~tps~~r  383 (508)
T COG4262         370 IVDLPDPSTPSIGR  383 (508)
T ss_pred             EEeCCCCCCcchhh
Confidence            98655433333333

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=95.16  E-value=0.055  Score=54.09  Aligned_cols=99  Identities=13%  Similarity=0.019  Sum_probs=70.2

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      .|++.+.+... .++..++|.=||.|..+..+++.. ..+|+|+|.++.+++.++++...    ...++.++++++.++.
T Consensus         7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~----~~~R~~~i~~nF~~l~   82 (305)
T TIGR00006         7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD----FEGRVVLIHDNFANFF   82 (305)
T ss_pred             hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh----cCCcEEEEeCCHHHHH
Confidence            34444444443 357799999999999999998764 48999999999999998876422    2458999999988765


Q ss_pred             ccC----CCceeEEEEccc--cccccchHhH
Q psy11730        355 AVI----HSKFDIILTSET--IYSVANYNKL  379 (496)
Q Consensus       355 ~~~----~~~fD~Ii~~~~--l~~~~~~~~~  379 (496)
                      ...    ..++|.|+++.=  -+.+.+.+.=
T Consensus        83 ~~l~~~~~~~vDgIl~DLGvSS~Qld~~~RG  113 (305)
T TIGR00006        83 EHLDELLVTKIDGILVDLGVSSPQLDDPERG  113 (305)
T ss_pred             HHHHhcCCCcccEEEEeccCCHhhcCCCCCC
Confidence            432    257999998433  3333444443

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.83  E-value=0.038  Score=52.34  Aligned_cols=56  Identities=14%  Similarity=0.036  Sum_probs=41.2

Q ss_pred             cchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhc
Q psy11730        273 ECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLT  329 (496)
Q Consensus       273 ~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~  329 (496)
                      +-...|++.+......+|..|||--||+|..+.++.+. ..+.+|+|++++.++.|+
T Consensus       175 ~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~  230 (231)
T PF01555_consen  175 QKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAK  230 (231)
T ss_dssp             -S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhc
Confidence            34556777777666667999999999999999994444 467999999999998875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.78  E-value=0.095  Score=49.37  Aligned_cols=80  Identities=16%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .+.++.||||-=|++..+|.+.+. ..+++.|+++..++.|.++....+  ...++++..+|....... ...+|+|+..
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~~l~~-~d~~d~ivIA   92 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLAVLEL-EDEIDVIVIA   92 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCccccCc-cCCcCEEEEe
Confidence            355699999999999999999888 789999999999999876654433  577888888887443322 4579998886


Q ss_pred             cccc
Q psy11730        368 ETIY  371 (496)
Q Consensus       368 ~~l~  371 (496)
                      ++--
T Consensus        93 GMGG   96 (226)
T COG2384          93 GMGG   96 (226)
T ss_pred             CCcH
Confidence            6643

>KOG1501|consensus

Probab=94.58  E-value=0.034  Score=56.98  Aligned_cols=56  Identities=21%  Similarity=0.296  Sum_probs=44.6

Q ss_pred             eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      .|||||+|||.+++.+++.|+..|++++.=..|.+.|++--  .+.+-..+|+++.-.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~--~kng~SdkI~vInkr  124 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIM--HKNGMSDKINVINKR  124 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHH--hcCCCccceeeeccc
Confidence            69999999999999999999999999999999998877532  222345566666543

>PRK11524 putative methyltransferase; Provisional

Probab=94.55  E-value=0.061  Score=53.54  Aligned_cols=58  Identities=19%  Similarity=-0.077  Sum_probs=48.9

Q ss_pred             chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcc
Q psy11730        274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN  332 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~  332 (496)
                      -...|++.|......+|..|||-.||+|..+++ |..-..+.+|+|++++.++.|+++.
T Consensus       193 kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~A-A~~lgR~~IG~Ei~~~Y~~~a~~Rl  250 (284)
T PRK11524        193 KPEALLKRIILASSNPGDIVLDPFAGSFTTGAV-AKASGRKFIGIEINSEYIKMGLRRL  250 (284)
T ss_pred             ChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHH
Confidence            345778887777777899999999999999999 5555578999999999999998874

>KOG4058|consensus

Probab=94.52  E-value=0.049  Score=47.86  Aligned_cols=66  Identities=17%  Similarity=0.124  Sum_probs=53.2

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+..+.+|||+|.|.+-+.+++.|...-+|+++++-.+.+++..+....  -.....|..-|+-+...
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~RkdlwK~dl  136 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDLWKVDL  136 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhhhhccc
Confidence            3457999999999999999999998889999999999999887766544  34566777777666554

>PRK00536 speE spermidine synthase; Provisional

Probab=94.46  E-value=0.16  Score=49.77  Aligned_cols=77  Identities=16%  Similarity=0.094  Sum_probs=58.5

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      ..+.++||=||.|-|..+..+++.. .+|+.+|+++++++.+++...... ....++++++.. +.   ....++||+||
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~---~~~~~~fDVII  144 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL---DLDIKKYDLII  144 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh---hccCCcCCEEE
Confidence            3567899999999999999988775 499999999999999998554332 245677877752 21   11136899999


Q ss_pred             Ecc
Q psy11730        366 TSE  368 (496)
Q Consensus       366 ~~~  368 (496)
                      ...
T Consensus       145 vDs  147 (262)
T PRK00536        145 CLQ  147 (262)
T ss_pred             EcC
Confidence            874

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=94.34  E-value=0.081  Score=49.84  Aligned_cols=87  Identities=21%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             ecchHHHHHHHHhCCCC-C----CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEE
Q psy11730        272 WECTFDLLNFIKDNVAV-D----KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY  346 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~-~----~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~  346 (496)
                      -.++..|++||...... .    .-++|||||=+......  ..+.-.|+.||+++.                  .-.+.
T Consensus        29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~------------------~~~I~   88 (219)
T PF11968_consen   29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ------------------HPGIL   88 (219)
T ss_pred             CchhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC------------------CCCce
Confidence            45678899999887532 2    24899999976655443  234445999999861                  11236


Q ss_pred             ecccCCcccc--CCCceeEEEEccccccccchHh
Q psy11730        347 HGDWGSLSAV--IHSKFDIILTSETIYSVANYNK  378 (496)
Q Consensus       347 ~~d~~~~~~~--~~~~fD~Ii~~~~l~~~~~~~~  378 (496)
                      +.|+-+.+.+  ..+.||+|.++.+|.+++++..
T Consensus        89 qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~  122 (219)
T PF11968_consen   89 QQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQ  122 (219)
T ss_pred             eeccccCCCCCCcccceeEEEEEEEEeeCCCHHH
Confidence            6676665432  3578999999999999998866

>KOG3987|consensus

Probab=94.11  E-value=0.0083  Score=55.52  Aligned_cols=88  Identities=22%  Similarity=0.271  Sum_probs=59.4

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEE-ecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY-HGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ..+.++||||+|.|-++..++ -...+|++.++|..|....++++-.          ++ ..+|.+.    +-+||+|.|
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~yn----------Vl~~~ew~~t----~~k~dli~c  175 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKNYN----------VLTEIEWLQT----DVKLDLILC  175 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcCCc----------eeeehhhhhc----CceeehHHH
Confidence            346799999999999999855 3346799999999999998876521          11 1222221    457999999


Q ss_pred             ccccccccchHhHhhe-e-eecCCCC
Q psy11730        367 SETIYSVANYNKLLTV-W-CLFPTHT  390 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~-~-~l~p~~~  390 (496)
                      -..+----++-++++- | .+.|..+
T Consensus       176 lNlLDRc~~p~kLL~Di~~vl~psng  201 (288)
T KOG3987|consen  176 LNLLDRCFDPFKLLEDIHLVLAPSNG  201 (288)
T ss_pred             HHHHHhhcChHHHHHHHHHHhccCCC
Confidence            7776655555555543 2 4555443

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.09  E-value=0.19  Score=49.39  Aligned_cols=111  Identities=18%  Similarity=0.186  Sum_probs=73.2

Q ss_pred             HHHHHHhCCC-----CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcC--cc-cccc-------------
Q psy11730        278 LLNFIKDNVA-----VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTL--PN-ILMN-------------  336 (496)
Q Consensus       278 l~~~l~~~~~-----~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~--~~-~~~~-------------  336 (496)
                      +++.|.+..+     ..+.+||==|||.|.++..+|..|. .+.|.|.|--|+-..+-  +. .+.+             
T Consensus        40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn  118 (270)
T PF07942_consen   40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN  118 (270)
T ss_pred             HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence            4444554433     2356999999999999999999987 69999999999643221  00 0011             


Q ss_pred             ---------------------cCCCCceEEEecccCCccccC--CCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        337 ---------------------TDNLEKCKFYHGDWGSLSAVI--HSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       337 ---------------------~~~~~~v~~~~~d~~~~~~~~--~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                                           .....++....+|+.++-...  .+.||+|+....+-..+|.-..++..  +|.|+|
T Consensus       119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG  196 (270)
T PF07942_consen  119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG  196 (270)
T ss_pred             CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC
Confidence                                 012346777778877765542  36899999886665556666666542  566655

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=93.89  E-value=0.081  Score=44.06  Aligned_cols=30  Identities=30%  Similarity=0.338  Sum_probs=25.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEe
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQD  319 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD  319 (496)
                      +.....|||||+|.+..-|.+.|.. -.|+|
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD   87 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYP-GWGID   87 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCC-ccccc
Confidence            4568999999999999999988863 56666

; GO: 0008168 methyltransferase activity

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=93.83  E-value=0.15  Score=49.12  Aligned_cols=81  Identities=22%  Similarity=0.145  Sum_probs=55.8

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ..+|+|||||.=-+++......+ ..++|+|++..+++....-...    ...+.++...|...-+.  ....|+.+..=
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~----l~~~~~~~v~Dl~~~~~--~~~~DlaLllK  179 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV----LGVPHDARVRDLLSDPP--KEPADLALLLK  179 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH----TT-CEEEEEE-TTTSHT--TSEESEEEEET
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh----hCCCcceeEeeeeccCC--CCCcchhhHHH
Confidence            78999999999999988665443 6899999999999987755322    23456666667654432  57899999987


Q ss_pred             ccccccch
Q psy11730        369 TIYSVANY  376 (496)
Q Consensus       369 ~l~~~~~~  376 (496)
                      +++.+...
T Consensus       180 ~lp~le~q  187 (251)
T PF07091_consen  180 TLPCLERQ  187 (251)
T ss_dssp             -HHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777443

>KOG4589|consensus

Probab=93.54  E-value=0.37  Score=44.29  Aligned_cols=82  Identities=17%  Similarity=0.201  Sum_probs=52.6

Q ss_pred             cchHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHcc-C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEec-
Q psy11730        273 ECTFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNG-A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHG-  348 (496)
Q Consensus       273 ~~~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~-  348 (496)
                      .+++.|++.=.++.-+ ++.+|||+||-.|.++..+.++- + +.|.|||+-.-              ...+.++++.+ 
T Consensus        52 RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------------~p~~Ga~~i~~~  117 (232)
T KOG4589|consen   52 RSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------------EPPEGATIIQGN  117 (232)
T ss_pred             hhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------------cCCCCccccccc
Confidence            3455555544444433 47899999999999999977654 4 78999996431              13445555555 


Q ss_pred             ccCCccc-------cCCCceeEEEEcc
Q psy11730        349 DWGSLSA-------VIHSKFDIILTSE  368 (496)
Q Consensus       349 d~~~~~~-------~~~~~fD~Ii~~~  368 (496)
                      |+.+...       .++...|+|+|..
T Consensus       118 dvtdp~~~~ki~e~lp~r~VdvVlSDM  144 (232)
T KOG4589|consen  118 DVTDPETYRKIFEALPNRPVDVVLSDM  144 (232)
T ss_pred             ccCCHHHHHHHHHhCCCCcccEEEecc
Confidence            4443221       1256899999854

>PRK13699 putative methylase; Provisional

Probab=93.53  E-value=0.14  Score=49.23  Aligned_cols=58  Identities=12%  Similarity=-0.016  Sum_probs=46.4

Q ss_pred             chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcc
Q psy11730        274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN  332 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~  332 (496)
                      -...|++.+......+|..|||-.||+|..+.++.+. ...++|+|++++.++.+.++.
T Consensus       148 kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~  205 (227)
T PRK13699        148 KPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRL  205 (227)
T ss_pred             CcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHH
Confidence            3456777666655567899999999999999995554 457999999999999887764

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=93.40  E-value=0.12  Score=52.38  Aligned_cols=73  Identities=19%  Similarity=0.134  Sum_probs=56.1

Q ss_pred             EEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcccccc
Q psy11730        293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       293 VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~  372 (496)
                      |+||.||.|.+++-+.+.|...+.++|+++.+++..+.+..        + .++.+|+.++.......+|+++..++...
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~--------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~   71 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG--------N-KVPFGDITKISPSDIPDFDILLGGFPCQP   71 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC--------C-CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence            68999999999999888898888899999999988765431        1 33567777765322346899999888777


Q ss_pred             cc
Q psy11730        373 VA  374 (496)
Q Consensus       373 ~~  374 (496)
                      ++
T Consensus        72 fS   73 (315)
T TIGR00675        72 FS   73 (315)
T ss_pred             cc
Confidence            64

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=93.24  E-value=0.17  Score=51.15  Aligned_cols=86  Identities=14%  Similarity=0.053  Sum_probs=56.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-----cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEE--EecccCCcccc-----
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-----GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKF--YHGDWGSLSAV-----  356 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-----~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~--~~~d~~~~~~~-----  356 (496)
                      ++..|+|+|||+|.-+..|...     ....++++|+|.++++.+..+...   ...+.+.+  +.+|+.+....     
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~---~~~p~l~v~~l~gdy~~~l~~l~~~~  152 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL---GNFSHVRCAGLLGTYDDGLAWLKRPE  152 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh---ccCCCeEEEEEEecHHHHHhhccccc
Confidence            4568999999999987665442     235799999999999988776531   12344554  77887653211     


Q ss_pred             CCCceeEEEE-ccccccccchH
Q psy11730        357 IHSKFDIILT-SETIYSVANYN  377 (496)
Q Consensus       357 ~~~~fD~Ii~-~~~l~~~~~~~  377 (496)
                      ......+|+. ..+|..++..+
T Consensus       153 ~~~~~r~~~flGSsiGNf~~~e  174 (319)
T TIGR03439       153 NRSRPTTILWLGSSIGNFSRPE  174 (319)
T ss_pred             ccCCccEEEEeCccccCCCHHH
Confidence            1234566666 45777775544

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=93.03  E-value=0.083  Score=53.15  Aligned_cols=74  Identities=15%  Similarity=0.129  Sum_probs=55.5

Q ss_pred             eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC-ceeEEEEcccc
Q psy11730        292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS-KFDIILTSETI  370 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~fD~Ii~~~~l  370 (496)
                      +|+||.||.|.+++-+.+.|...|.++|+++.+++..+.+..          ....+|+.++....-. .+|+++..++.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~----------~~~~~Di~~~~~~~l~~~~D~l~ggpPC   71 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP----------EVICGDITEIDPSDLPKDVDLLIGGPPC   71 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT----------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc----------ccccccccccccccccccceEEEeccCC
Confidence            689999999999999999999899999999999988776541          6678888877642112 59999999888


Q ss_pred             ccccc
Q psy11730        371 YSVAN  375 (496)
Q Consensus       371 ~~~~~  375 (496)
                      .-++.
T Consensus        72 Q~fS~   76 (335)
T PF00145_consen   72 QGFSI   76 (335)
T ss_dssp             TTTST
T ss_pred             ceEec
Confidence            77743

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG2078|consensus

Probab=92.97  E-value=0.13  Score=52.89  Aligned_cols=82  Identities=20%  Similarity=0.172  Sum_probs=59.6

Q ss_pred             eecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        271 IWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       271 ~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      +|..-+..-........-.|..|.|+.||.|-+++.+++.+ +.|++-|+++++++..+.+.. .|--...++.+..+|+
T Consensus       231 YWnsRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~-lNkv~~~~iei~Nmda  308 (495)
T KOG2078|consen  231 YWNSRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIK-LNKVDPSAIEIFNMDA  308 (495)
T ss_pred             EeeccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhcc-ccccchhheeeecccH
Confidence            48765544333333333468899999999999999988877 899999999999999876543 3333345577788776


Q ss_pred             CCcc
Q psy11730        351 GSLS  354 (496)
Q Consensus       351 ~~~~  354 (496)
                      .++.
T Consensus       309 ~~Fl  312 (495)
T KOG2078|consen  309 KDFL  312 (495)
T ss_pred             HHHh
Confidence            6554

>KOG1227|consensus

Probab=92.94  E-value=0.041  Score=53.89  Aligned_cols=96  Identities=20%  Similarity=0.249  Sum_probs=59.6

Q ss_pred             CCCeEEEecCcCCHHHH-HHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGL-YTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~-~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .+..|.|+.+|.|++++ ++...|++.|+++|.++..++..++.+..++.  .....++.+|-...  .+....|-|...
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V--~~r~~i~~gd~R~~--~~~~~AdrVnLG  269 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV--MDRCRITEGDNRNP--KPRLRADRVNLG  269 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch--HHHHHhhhcccccc--Cccccchheeec
Confidence            46789999999999999 88899999999999999999987766533321  11222222322111  114556666654


Q ss_pred             cccccccchHhHhheeeecCCCC
Q psy11730        368 ETIYSVANYNKLLTVWCLFPTHT  390 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~~l~p~~~  390 (496)
                      ..-..-..+....+  .|.|.++
T Consensus       270 LlPSse~~W~~A~k--~Lk~egg  290 (351)
T KOG1227|consen  270 LLPSSEQGWPTAIK--ALKPEGG  290 (351)
T ss_pred             cccccccchHHHHH--HhhhcCC
Confidence            33333333333333  4566655

>KOG2671|consensus

Probab=92.92  E-value=0.1  Score=52.08  Aligned_cols=86  Identities=19%  Similarity=0.072  Sum_probs=63.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhc--Cccccccc----CCCCceEEEecccCCccccCCCcee
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLT--LPNILMNT----DNLEKCKFYHGDWGSLSAVIHSKFD  362 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~--~~~~~~~~----~~~~~v~~~~~d~~~~~~~~~~~fD  362 (496)
                      +|+.|+|=--|||.+...+|..| +.|+|.|++-.|+...+  ..++..|.    ....-+.++.+|....+......||
T Consensus       208 pGdivyDPFVGTGslLvsaa~FG-a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD  286 (421)
T KOG2671|consen  208 PGDIVYDPFVGTGSLLVSAAHFG-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD  286 (421)
T ss_pred             CCCEEecCccccCceeeehhhhc-ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence            58899999999999999966666 57999999999987322  22333332    1344677888888876654456899


Q ss_pred             EEEEccccccccc
Q psy11730        363 IILTSETIYSVAN  375 (496)
Q Consensus       363 ~Ii~~~~l~~~~~  375 (496)
                      .|+|.+++---..
T Consensus       287 aIvcDPPYGVRe~  299 (421)
T KOG2671|consen  287 AIVCDPPYGVREG  299 (421)
T ss_pred             EEEeCCCcchhhh
Confidence            9999999754433

>KOG1663|consensus

Probab=92.68  E-value=0.25  Score=46.86  Aligned_cols=77  Identities=14%  Similarity=0.054  Sum_probs=58.6

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-----CCCc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-----IHSK  360 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~  360 (496)
                      .+++++||||.=||+-++.+|..-+  ++|+++|++++..+.+.....  ..+....|++++++..+....     ..+.
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k--~agv~~KI~~i~g~a~esLd~l~~~~~~~t  149 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK--LAGVDHKITFIEGPALESLDELLADGESGT  149 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH--hccccceeeeeecchhhhHHHHHhcCCCCc
Confidence            4789999999999999999887666  799999999999988743321  234567899999886543221     1468


Q ss_pred             eeEEEE
Q psy11730        361 FDIILT  366 (496)
Q Consensus       361 fD~Ii~  366 (496)
                      ||+++.
T Consensus       150 fDfaFv  155 (237)
T KOG1663|consen  150 FDFAFV  155 (237)
T ss_pred             eeEEEE
Confidence            999998

>KOG2352|consensus

Probab=92.49  E-value=0.36  Score=50.69  Aligned_cols=92  Identities=20%  Similarity=0.305  Sum_probs=73.6

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .+...|........-++|-+|||.=.++..+-+.|...|+.+|+|+-.++....++..    ......+..+|+..+.+.
T Consensus        36 ~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~----~~~~~~~~~~d~~~l~fe  111 (482)
T KOG2352|consen   36 SLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK----ERPEMQMVEMDMDQLVFE  111 (482)
T ss_pred             HHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc----CCcceEEEEecchhccCC
Confidence            3444444443323349999999999999999999999999999999999988877642    346778888998888876


Q ss_pred             CCCceeEEEEccccccc
Q psy11730        357 IHSKFDIILTSETIYSV  373 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~  373 (496)
                       +++||+|+.-+.+.++
T Consensus       112 -dESFdiVIdkGtlDal  127 (482)
T KOG2352|consen  112 -DESFDIVIDKGTLDAL  127 (482)
T ss_pred             -CcceeEEEecCccccc
Confidence             7999999998888877

>KOG3178|consensus

Probab=92.12  E-value=0.31  Score=49.07  Aligned_cols=88  Identities=17%  Similarity=0.087  Sum_probs=65.7

Q ss_pred             CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcccc
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETI  370 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l  370 (496)
                      ...+|+|.|.|..+..+.. .+.+|-+++.....+..++....       ..|..+.+|+-.-.    ..-|+|+.-+++
T Consensus       179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~~----P~~daI~mkWiL  246 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQDT----PKGDAIWMKWIL  246 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-------CCcceecccccccC----CCcCeEEEEeec
Confidence            5899999999999999988 55679999999999887665431       34777778865432    234699999999


Q ss_pred             ccccchH--hHhhe-eeecCCCC
Q psy11730        371 YSVANYN--KLLTV-WCLFPTHT  390 (496)
Q Consensus       371 ~~~~~~~--~~~~~-~~l~p~~~  390 (496)
                      ||+.|-+  +++++ |.-+|+++
T Consensus       247 hdwtDedcvkiLknC~~sL~~~G  269 (342)
T KOG3178|consen  247 HDWTDEDCVKILKNCKKSLPPGG  269 (342)
T ss_pred             ccCChHHHHHHHHHHHHhCCCCC
Confidence            9996654  46666 44455544

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=92.01  E-value=0.19  Score=49.94  Aligned_cols=127  Identities=17%  Similarity=0.109  Sum_probs=84.5

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDI  363 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~  363 (496)
                      +.++..|||+++|.|.=+..+++...  +.|++.|++..-+...+.+....   +..++.....|........ ...||.
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~---g~~~v~~~~~D~~~~~~~~~~~~fd~  159 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL---GVFNVIVINADARKLDPKKPESKFDR  159 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT---T-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc---CCceEEEEeeccccccccccccccch
Confidence            34688999999999999999887544  79999999999998877665433   4677888877766653221 346999


Q ss_pred             EEEccccccc------cchHh---------H-------hhe-e-ee----cCCCCCcccEEEeeccCCcccccccchhhH
Q psy11730        364 ILTSETIYSV------ANYNK---------L-------LTV-W-CL----FPTHTPKDLLKVTSAEGGKQRDEAITWFSI  415 (496)
Q Consensus       364 Ii~~~~l~~~------~~~~~---------~-------~~~-~-~l----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (496)
                      |+...+..-.      ++...         +       ++. + .+    .|++.   ++|..-.....+....+.+|..
T Consensus       160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~---lvYsTCS~~~eENE~vV~~fl~  236 (283)
T PF01189_consen  160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGR---LVYSTCSLSPEENEEVVEKFLK  236 (283)
T ss_dssp             EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEE---EEEEESHHHGGGTHHHHHHHHH
T ss_pred             hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCe---EEEEeccHHHHHHHHHHHHHHH
Confidence            9985544333      11111         1       111 1 44    45554   6777666666667778888877


Q ss_pred             hcCC
Q psy11730        416 IYPR  419 (496)
Q Consensus       416 ~~~~  419 (496)
                      .++.
T Consensus       237 ~~~~  240 (283)
T PF01189_consen  237 RHPD  240 (283)
T ss_dssp             HSTS
T ss_pred             hCCC
Confidence            6654

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=91.62  E-value=0.35  Score=49.19  Aligned_cols=77  Identities=16%  Similarity=0.157  Sum_probs=59.8

Q ss_pred             CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CC-ceeEEEEcc
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HS-KFDIILTSE  368 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~-~fD~Ii~~~  368 (496)
                      .+++||.||.|.+.+-+...|..-+.++|+++.+++.-+.+..        ...+...|+.++.... .. .+|+|+..+
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~--------~~~~~~~di~~~~~~~~~~~~~DvligGp   75 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP--------HGDIILGDIKELDGEALRKSDVDVLIGGP   75 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC--------CCceeechHhhcChhhccccCCCEEEeCC
Confidence            4799999999999999999999889999999999988665542        1445666666554321 12 789999999


Q ss_pred             ccccccc
Q psy11730        369 TIYSVAN  375 (496)
Q Consensus       369 ~l~~~~~  375 (496)
                      +.+.++.
T Consensus        76 PCQ~FS~   82 (328)
T COG0270          76 PCQDFSI   82 (328)
T ss_pred             CCcchhh
Confidence            9988843

>KOG3115|consensus

Probab=91.23  E-value=0.15  Score=47.28  Aligned_cols=62  Identities=11%  Similarity=0.084  Sum_probs=44.5

Q ss_pred             CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc----cCCCCceEEEecccCC
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN----TDNLEKCKFYHGDWGS  352 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~----~~~~~~v~~~~~d~~~  352 (496)
                      -.+.|||||-|.+.+.|+-..+ .-+.|.++-....++.+.+.....    .+...|+.+++.+.-.
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk  128 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK  128 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence            3689999999999999998888 568999988877777666533222    1235666666665443

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=91.22  E-value=0.78  Score=42.75  Aligned_cols=95  Identities=14%  Similarity=0.097  Sum_probs=65.1

Q ss_pred             ceeeecchH-HHHHHHHhCC---CCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730        268 GYKIWECTF-DLLNFIKDNV---AVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLE  341 (496)
Q Consensus       268 ~~~~~~~~~-~l~~~l~~~~---~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~  341 (496)
                      .|+.|+.-. .|+..|.+..   +++ |++||-||+-+|.....++..-. +.|+||+.|+.+....-.-.     ..-+
T Consensus        50 eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a-----~~R~  124 (231)
T COG1889          50 EYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA-----EKRP  124 (231)
T ss_pred             ceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH-----HhCC
Confidence            488898744 4555555543   344 78999999999999998887544 78999999998755432211     1234


Q ss_pred             ceEEEecccCCccccC--CCceeEEEEc
Q psy11730        342 KCKFYHGDWGSLSAVI--HSKFDIILTS  367 (496)
Q Consensus       342 ~v~~~~~d~~~~~~~~--~~~fD~Ii~~  367 (496)
                      |+-.+.+|+.....+.  -+..|+|+..
T Consensus       125 Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D  152 (231)
T COG1889         125 NIIPILEDARKPEKYRHLVEKVDVIYQD  152 (231)
T ss_pred             CceeeecccCCcHHhhhhcccccEEEEe
Confidence            6777888877654432  3568888875

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=90.74  E-value=0.48  Score=50.87  Aligned_cols=93  Identities=19%  Similarity=0.235  Sum_probs=60.8

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHcc-----CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNG-----AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~-----~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .+.++|.+.+.+ ...+|+|-.||+|.+....++..     -..++|.|.++.....|+-+....+...  ++...++|-
T Consensus       173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~--~~~i~~~dt  250 (489)
T COG0286         173 EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG--DANIRHGDT  250 (489)
T ss_pred             HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc--ccccccccc
Confidence            344444444433 35599999999998888765532     2568999999999998887654433111  344455553


Q ss_pred             CCcccc----CCCceeEEEEccccc
Q psy11730        351 GSLSAV----IHSKFDIILTSETIY  371 (496)
Q Consensus       351 ~~~~~~----~~~~fD~Ii~~~~l~  371 (496)
                      ..-+..    ..+.||+|++++++.
T Consensus       251 l~~~~~~~~~~~~~~D~viaNPPf~  275 (489)
T COG0286         251 LSNPKHDDKDDKGKFDFVIANPPFS  275 (489)
T ss_pred             ccCCcccccCCccceeEEEeCCCCC
Confidence            333322    136799999999986

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=90.08  E-value=0.59  Score=44.38  Aligned_cols=100  Identities=11%  Similarity=0.107  Sum_probs=60.3

Q ss_pred             hHHHHHHHHhCCC-CC--CCeEEEecCcCCHHHHHH-HHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        275 TFDLLNFIKDNVA-VD--KLSVLDVGCGAGLLGLYT-LMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       275 ~~~l~~~l~~~~~-~~--~~~VLDlGcGtG~~~~~l-a~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      ...|+++|.+.-+ +.  +-++||||.|.--+--.+ ...+.-..+|.|+++..++.|+... ..|......++.....=
T Consensus        61 ih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii-~~N~~l~~~I~lr~qk~  139 (292)
T COG3129          61 IHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAII-SANPGLERAIRLRRQKD  139 (292)
T ss_pred             HHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHH-HcCcchhhheeEEeccC
Confidence            4467788776543 33  347899987754332222 2344467999999999999877543 23333344444444321


Q ss_pred             CCccc----cCCCceeEEEEccccccccc
Q psy11730        351 GSLSA----VIHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       351 ~~~~~----~~~~~fD~Ii~~~~l~~~~~  375 (496)
                      .+..+    ...+.||+++|++++|.-..
T Consensus       140 ~~~if~giig~nE~yd~tlCNPPFh~s~~  168 (292)
T COG3129         140 SDAIFNGIIGKNERYDATLCNPPFHDSAA  168 (292)
T ss_pred             ccccccccccccceeeeEecCCCcchhHH
Confidence            11111    11568999999999987643

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=90.08  E-value=0.99  Score=46.42  Aligned_cols=127  Identities=18%  Similarity=0.117  Sum_probs=85.6

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC---CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-C-Ccee
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA---AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-H-SKFD  362 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~-~~fD  362 (496)
                      .+|.+|||+.++-|.=+..+++...   ..|+++|.++.-+...+.+....   +..|+.+.+.|...++... . +.||
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl---G~~nv~~~~~d~~~~~~~~~~~~~fD  231 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL---GVRNVIVVNKDARRLAELLPGGEKFD  231 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc---CCCceEEEecccccccccccccCcCc
Confidence            4588999999999998888887654   45799999999988877665433   4667888888876554322 2 2599


Q ss_pred             EEEEccccccccch------------HhH----------hhe-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcC
Q psy11730        363 IILTSETIYSVANY------------NKL----------LTV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYP  418 (496)
Q Consensus       363 ~Ii~~~~l~~~~~~------------~~~----------~~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (496)
                      .|+...+..-..-.            +.+          ++. + .+.|+|.   ++|..-.....++...+.+|....+
T Consensus       232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~---LVYSTCS~~~eENE~vV~~~L~~~~  308 (355)
T COG0144         232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGV---LVYSTCSLTPEENEEVVERFLERHP  308 (355)
T ss_pred             EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCE---EEEEccCCchhcCHHHHHHHHHhCC
Confidence            99986655443211            111          111 2 5556665   6777666666667778888877665


Q ss_pred             CC
Q psy11730        419 RT  420 (496)
Q Consensus       419 ~~  420 (496)
                      ..
T Consensus       309 ~~  310 (355)
T COG0144         309 DF  310 (355)
T ss_pred             Cc
Confidence            53

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=89.83  E-value=0.81  Score=45.84  Aligned_cols=90  Identities=17%  Similarity=0.107  Sum_probs=60.4

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-----CCc
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-----HSK  360 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~  360 (496)
                      ..++..++|.=-|.|.++..+++..+ .+|+|+|.++++++.++++...    ...++.++++++.++....     ...
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~----~~~r~~~~~~~F~~l~~~l~~~~~~~~   93 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK----FDDRFIFIHGNFSNLDEYLKELNGINK   93 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC----CCTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh----ccceEEEEeccHHHHHHHHHHccCCCc
Confidence            34577999999999999999997644 8999999999999998876532    2578999999988765432     247


Q ss_pred             eeEEEEc--cccccccchHhHh
Q psy11730        361 FDIILTS--ETIYSVANYNKLL  380 (496)
Q Consensus       361 fD~Ii~~--~~l~~~~~~~~~~  380 (496)
                      +|.|+..  -+.+++.+.+.=|
T Consensus        94 ~dgiL~DLGvSS~Qld~~~RGF  115 (310)
T PF01795_consen   94 VDGILFDLGVSSMQLDDPERGF  115 (310)
T ss_dssp             EEEEEEE-S--HHHHHTGGGSS
T ss_pred             cCEEEEccccCHHHhCCCCCCC
Confidence            9999983  3444445544433

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=88.94  E-value=0.63  Score=47.26  Aligned_cols=89  Identities=19%  Similarity=0.197  Sum_probs=69.2

Q ss_pred             CCeEEEecCcCCHHHHHHHHccCC-eEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGAA-HVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ..+|||.=||||.=++..+..... +|+.-|+|+++++..+++...+   ...+..+++.|...+....+..||+|=..+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP  129 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---SGEDAEVINKDANALLHELHRAFDVIDIDP  129 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---CcccceeecchHHHHHHhcCCCccEEecCC
Confidence            779999999999999999876654 8999999999999988765333   355667777888877765567899998876


Q ss_pred             ccccccchHhHhh
Q psy11730        369 TIYSVANYNKLLT  381 (496)
Q Consensus       369 ~l~~~~~~~~~~~  381 (496)
                      .-...+-.+..+.
T Consensus       130 FGSPaPFlDaA~~  142 (380)
T COG1867         130 FGSPAPFLDAALR  142 (380)
T ss_pred             CCCCchHHHHHHH
Confidence            6665665666554

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=88.77  E-value=0.2  Score=41.63  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=24.6

Q ss_pred             EEecCcCCHHHHHHHHccC----CeEEEEeCCHH---HHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEE
Q psy11730        294 LDVGCGAGLLGLYTLMNGA----AHVSFQDYNQE---VIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIIL  365 (496)
Q Consensus       294 LDlGcGtG~~~~~la~~~~----~~v~giD~s~~---~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii  365 (496)
                      ||||+..|..+..+++.-.    .+++++|..+.   .-+..++      .....+++++.++..+..... .+++|+|+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~------~~~~~~~~~~~g~s~~~l~~~~~~~~dli~   74 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK------AGLSDRVEFIQGDSPDFLPSLPDGPIDLIF   74 (106)
T ss_dssp             --------------------------EEEESS------------------GGG-BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhh------cCCCCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence            6899999999988876322    47999999995   3222222      123457999999877653322 37899999


Q ss_pred             Eccc
Q psy11730        366 TSET  369 (496)
Q Consensus       366 ~~~~  369 (496)
                      ....
T Consensus        75 iDg~   78 (106)
T PF13578_consen   75 IDGD   78 (106)
T ss_dssp             EES-
T ss_pred             ECCC
Confidence            8653

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=88.53  E-value=0.49  Score=46.25  Aligned_cols=104  Identities=14%  Similarity=0.156  Sum_probs=55.8

Q ss_pred             CeEEEecCcC--CHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCc--eEEEecccCCccccCC-----C
Q psy11730        291 LSVLDVGCGA--GLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEK--CKFYHGDWGSLSAVIH-----S  359 (496)
Q Consensus       291 ~~VLDlGcGt--G~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~--v~~~~~d~~~~~~~~~-----~  359 (496)
                      +.+||||||-  -.....+|+. .+ .+|+-+|+.+-.+..++.-..     ...+  ..++.+|+.+....+.     +
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~-----~~~~g~t~~v~aD~r~p~~iL~~p~~~~  144 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA-----DNPRGRTAYVQADLRDPEAILAHPEVRG  144 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT-----T-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc-----CCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence            5899999994  2334444543 33 799999999999987665431     2234  8899999887544322     3


Q ss_pred             cee-----EEEEccccccccc---hHhHhhe-eeecCCCCCcccEEEeeccC
Q psy11730        360 KFD-----IILTSETIYSVAN---YNKLLTV-WCLFPTHTPKDLLKVTSAEG  402 (496)
Q Consensus       360 ~fD-----~Ii~~~~l~~~~~---~~~~~~~-~~l~p~~~~~~~~~~~~~~~  402 (496)
                      .+|     .|+...++||+++   +..++.. ....|+|.   .+.++....
T Consensus       145 ~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS---~L~ish~t~  193 (267)
T PF04672_consen  145 LLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGS---YLAISHATD  193 (267)
T ss_dssp             C--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT----EEEEEEEB-
T ss_pred             cCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCc---eEEEEecCC
Confidence            355     4788999999965   4445544 24555555   455544443

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2651|consensus

Probab=88.50  E-value=0.73  Score=46.82  Aligned_cols=53  Identities=21%  Similarity=0.248  Sum_probs=39.9

Q ss_pred             HHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcC
Q psy11730        278 LLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTL  330 (496)
Q Consensus       278 l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~  330 (496)
                      |.+.+....... -..|+|+|.|-|.++.+++-.+.-.|.|||-|....+.|++
T Consensus       141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            444444433333 45899999999999999988888889999999777665543

>PRK10458 DNA cytosine methylase; Provisional

Probab=88.40  E-value=1.1  Score=47.72  Aligned_cols=80  Identities=11%  Similarity=0.102  Sum_probs=56.0

Q ss_pred             CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-------------
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-------------  356 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------------  356 (496)
                      .-+++||.||.|.+.+-+-..|...|.++|+++.+++.-+.+..     ..+...++.+|+.++...             
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~-----~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~  162 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY-----CDPATHRFNEDIRDITLSHKEGVSDEEAAEH  162 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC-----CCCccceeccChhhCccccccccchhhhhhh
Confidence            34899999999999999888888889999999999877554320     112233344555554321             


Q ss_pred             ---CCCceeEEEEcccccccc
Q psy11730        357 ---IHSKFDIILTSETIYSVA  374 (496)
Q Consensus       357 ---~~~~fD~Ii~~~~l~~~~  374 (496)
                         ....+|+++..++...++
T Consensus       163 ~~~~~p~~DvL~gGpPCQ~FS  183 (467)
T PRK10458        163 IRQHIPDHDVLLAGFPCQPFS  183 (467)
T ss_pred             hhccCCCCCEEEEcCCCCccc
Confidence               013579999988887764

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=88.08  E-value=1.5  Score=43.40  Aligned_cols=89  Identities=20%  Similarity=0.096  Sum_probs=67.2

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      .|++...+.+. .++...+|.=-|.|.++..+...++  ++++|+|-++.+++.|++....    ...++++++..+.++
T Consensus        10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~----~~~r~~~v~~~F~~l   85 (314)
T COG0275          10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE----FDGRVTLVHGNFANL   85 (314)
T ss_pred             hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc----cCCcEEEEeCcHHHH
Confidence            34444555443 4478999999999999999998876  7799999999999999887533    246899999988766


Q ss_pred             cccC----CCceeEEEEccc
Q psy11730        354 SAVI----HSKFDIILTSET  369 (496)
Q Consensus       354 ~~~~----~~~fD~Ii~~~~  369 (496)
                      ....    .+.+|-|+...=
T Consensus        86 ~~~l~~~~i~~vDGiL~DLG  105 (314)
T COG0275          86 AEALKELGIGKVDGILLDLG  105 (314)
T ss_pred             HHHHHhcCCCceeEEEEecc
Confidence            5432    257888887433

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=88.02  E-value=0.38  Score=46.84  Aligned_cols=102  Identities=15%  Similarity=0.254  Sum_probs=75.4

Q ss_pred             cccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCc
Q psy11730        264 VYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEK  342 (496)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~  342 (496)
                      +|.-||-+-+.+..-+.++....++.|+.|+=+| ---..+++++..+. ++|.-+|+.+..+.+..+-+.+.+   ..|
T Consensus       127 ~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~  202 (354)
T COG1568         127 QYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNN  202 (354)
T ss_pred             hcccccccccceeeeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccc
Confidence            4445555555555566777778889999999999 77888888877665 889999999999988665554433   566


Q ss_pred             eEEEecccCCc-cccCCCceeEEEEccc
Q psy11730        343 CKFYHGDWGSL-SAVIHSKFDIILTSET  369 (496)
Q Consensus       343 v~~~~~d~~~~-~~~~~~~fD~Ii~~~~  369 (496)
                      +..+..|+.+. +....+.||+++..++
T Consensus       203 ie~~~~Dlr~plpe~~~~kFDvfiTDPp  230 (354)
T COG1568         203 IEAFVFDLRNPLPEDLKRKFDVFITDPP  230 (354)
T ss_pred             hhheeehhcccChHHHHhhCCeeecCch
Confidence            77788887753 3333578999887766

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=87.72  E-value=0.59  Score=43.95  Aligned_cols=89  Identities=17%  Similarity=0.149  Sum_probs=54.2

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC---CeEEEEeCCHHHHHHhcCcccccc------------------------------
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA---AHVSFQDYNQEVIESLTLPNILMN------------------------------  336 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~---~~v~giD~s~~~i~~a~~~~~~~~------------------------------  336 (496)
                      +-++.|=.||+|.+...+.-...   ..|+|.|+++++++.|+++.....                              
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA  131 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA  131 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            34899999999999888765433   679999999999999988754222                              


Q ss_pred             ---------cCCCCceEEEecccCCccc----cCCCceeEEEEccccccccchHh
Q psy11730        337 ---------TDNLEKCKFYHGDWGSLSA----VIHSKFDIILTSETIYSVANYNK  378 (496)
Q Consensus       337 ---------~~~~~~v~~~~~d~~~~~~----~~~~~fD~Ii~~~~l~~~~~~~~  378 (496)
                               .+......+...|+.+...    ......|+|+..-++-++.+++.
T Consensus       132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g  186 (246)
T PF11599_consen  132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQG  186 (246)
T ss_dssp             HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS
T ss_pred             HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccC
Confidence                     2233456677776655211    11334799999888888866654

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=87.50  E-value=0.88  Score=47.12  Aligned_cols=91  Identities=20%  Similarity=0.169  Sum_probs=62.4

Q ss_pred             CCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      +-+|||.=+|+|.=++..+..  +..+|++-|+|+++++..+++...++ ...+.+++.+.|+..+.......||+|=..
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD  128 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDANVLLYSRQERFDVIDLD  128 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence            348999999999999999876  44899999999999999877643333 222368888999887664336889999987


Q ss_pred             cccccccchHhHhh
Q psy11730        368 ETIYSVANYNKLLT  381 (496)
Q Consensus       368 ~~l~~~~~~~~~~~  381 (496)
                      +--...+-++..++
T Consensus       129 PfGSp~pfldsA~~  142 (377)
T PF02005_consen  129 PFGSPAPFLDSALQ  142 (377)
T ss_dssp             -SS--HHHHHHHHH
T ss_pred             CCCCccHhHHHHHH
Confidence            76666666666665

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=86.91  E-value=1.5  Score=43.34  Aligned_cols=91  Identities=14%  Similarity=0.098  Sum_probs=50.6

Q ss_pred             CCeEEEecCcC-CHHHHHHHHcc-C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        290 KLSVLDVGCGA-GLLGLYTLMNG-A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       290 ~~~VLDlGcGt-G~~~~~la~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .++|+=||||. -..++.+++.. . ..|+++|+++++++.+++-.. ...+...++.|+.+|..+.... -..||+|+.
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~-~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV~l  198 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVA-SDLGLSKRMSFITADVLDVTYD-LKEYDVVFL  198 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG-----SEEEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh-hcccccCCeEEEecchhccccc-cccCCEEEE
Confidence            46999999996 66666667653 3 579999999999999875332 1123467899999998876543 368999988


Q ss_pred             ccccccc-cchHhHhhe
Q psy11730        367 SETIYSV-ANYNKLLTV  382 (496)
Q Consensus       367 ~~~l~~~-~~~~~~~~~  382 (496)
                      ....... .+...+++.
T Consensus       199 AalVg~~~e~K~~Il~~  215 (276)
T PF03059_consen  199 AALVGMDAEPKEEILEH  215 (276)
T ss_dssp             -TT-S----SHHHHHHH
T ss_pred             hhhcccccchHHHHHHH
Confidence            6665533 466666654

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=86.18  E-value=1.9  Score=41.94  Aligned_cols=90  Identities=12%  Similarity=0.090  Sum_probs=49.9

Q ss_pred             HHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC---------CeEEEEeCCHHHHHHhcCcccccc---cCCCCceE
Q psy11730        278 LLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA---------AHVSFQDYNQEVIESLTLPNILMN---TDNLEKCK  344 (496)
Q Consensus       278 l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~---------~~v~giD~s~~~i~~a~~~~~~~~---~~~~~~v~  344 (496)
                      +++.+....... .-+|+|+|+|+|.++..++..-.         .+++-||.|+.+.+.-+++.....   .....++.
T Consensus         6 ~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~   85 (252)
T PF02636_consen    6 IAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIR   85 (252)
T ss_dssp             HHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEE
T ss_pred             HHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccc
Confidence            344444443223 35999999999999999876322         479999999999876555432210   01123344


Q ss_pred             EEecccCCccccCCCceeEEEEccccccc
Q psy11730        345 FYHGDWGSLSAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       345 ~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      + ..++.+.+     ..-+|++++.+--+
T Consensus        86 w-~~~l~~~p-----~~~~iiaNE~~DAl  108 (252)
T PF02636_consen   86 W-LDDLEEVP-----FPGFIIANELFDAL  108 (252)
T ss_dssp             E-ESSGGCS------CCEEEEEESSGGGS
T ss_pred             h-hhhhhccc-----CCEEEEEeeehhcC
Confidence            4 22333221     45677788776444

; PDB: 4F3N_A 1ZKD_B.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=86.10  E-value=1.9  Score=43.89  Aligned_cols=53  Identities=17%  Similarity=0.170  Sum_probs=39.3

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHcc---------CCeEEEEeCCHHHHHHhcC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNG---------AAHVSFQDYNQEVIESLTL  330 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~---------~~~v~giD~s~~~i~~a~~  330 (496)
                      +++.++.......-.++|||.|.|.++.-+++..         +.++.-||.|++....-++
T Consensus        66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~  127 (370)
T COG1565          66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKE  127 (370)
T ss_pred             HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHH
Confidence            3444444444456689999999999999887632         4789999999999876443

>KOG1596|consensus

Probab=85.71  E-value=3.5  Score=39.57  Aligned_cols=95  Identities=16%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             cCceeeecchH-HHHHHHHhCC---CC-CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHH----HHHHhcCcccc
Q psy11730        266 EGGYKIWECTF-DLLNFIKDNV---AV-DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQE----VIESLTLPNIL  334 (496)
Q Consensus       266 ~~~~~~~~~~~-~l~~~l~~~~---~~-~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~----~i~~a~~~~~~  334 (496)
                      .-.|++|+.-. .|+.-|..-.   .+ ++.+||-||+++|..-..++.. |+ .-|++++.|+.    .+..|+++   
T Consensus       128 kvEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---  204 (317)
T KOG1596|consen  128 KVEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---  204 (317)
T ss_pred             cEEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---
Confidence            34688898733 4555555432   24 4889999999999987776653 44 67999998864    34555543   


Q ss_pred             cccCCCCceEEEecccCCcccc--CCCceeEEEEccc
Q psy11730        335 MNTDNLEKCKFYHGDWGSLSAV--IHSKFDIILTSET  369 (496)
Q Consensus       335 ~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~Ii~~~~  369 (496)
                            .||..+..|+.....+  +-.-.|+|++.-+
T Consensus       205 ------tNiiPIiEDArhP~KYRmlVgmVDvIFaDva  235 (317)
T KOG1596|consen  205 ------TNIIPIIEDARHPAKYRMLVGMVDVIFADVA  235 (317)
T ss_pred             ------CCceeeeccCCCchheeeeeeeEEEEeccCC
Confidence                  4677777776653322  1346788887544

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=84.29  E-value=0.64  Score=42.87  Aligned_cols=38  Identities=21%  Similarity=0.464  Sum_probs=25.2

Q ss_pred             chhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCC
Q psy11730        431 PLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSH  468 (496)
Q Consensus       431 p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~  468 (496)
                      .+-+..++|++++||.+|-|...|.++..=+..|||.+
T Consensus       109 ~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~  146 (182)
T PF06560_consen  109 VIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVPR  146 (182)
T ss_dssp             EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEET
T ss_pred             EEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEec
Confidence            34456799999999999999999997665566666543

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=84.04  E-value=2.1  Score=44.44  Aligned_cols=57  Identities=21%  Similarity=0.193  Sum_probs=44.5

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcc
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN  332 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~  332 (496)
                      |++.....+.|.-.   ++.+||-|.+| |...+.++..++++|++||+|+.+...+..+.
T Consensus        21 WEDp~vD~~aL~i~---~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   21 WEDPRVDMEALNIG---PDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             cCCcHHHHHHhCCC---CCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence            99988777776532   57789999765 55666668899999999999999988766553

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG1122|consensus

Probab=82.06  E-value=4.5  Score=41.92  Aligned_cols=129  Identities=12%  Similarity=0.069  Sum_probs=86.3

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHH--ccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc-ccCCCceeE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLM--NGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS-AVIHSKFDI  363 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~--~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~  363 (496)
                      +.+|.+|||+.+--|.=+..+|.  ...+.|+|.|.+..-+.....+....   +..|..+...|..+++ ....++||.
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl---Gv~ntiv~n~D~~ef~~~~~~~~fDR  315 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL---GVTNTIVSNYDGREFPEKEFPGSFDR  315 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh---CCCceEEEccCcccccccccCcccce
Confidence            35688999999998887777765  34478999999999888777655433   3667778888877664 222348999


Q ss_pred             EEEcccccc--ccchHhHh----------------he-----e-eecCCCCCcccEEEeeccCCcccccccchhhHhcCC
Q psy11730        364 ILTSETIYS--VANYNKLL----------------TV-----W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPR  419 (496)
Q Consensus       364 Ii~~~~l~~--~~~~~~~~----------------~~-----~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (496)
                      |+...+..-  +-..++.+                ++     . .+.++|.   ++|..-.....+....++|+-..++.
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGv---LVYSTCSI~~~ENE~vV~yaL~K~p~  392 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGV---LVYSTCSITVEENEAVVDYALKKRPE  392 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcE---EEEEeeecchhhhHHHHHHHHHhCCc
Confidence            997555444  11111111                11     1 4445433   67776666666778889999888876


Q ss_pred             CC
Q psy11730        420 TQ  421 (496)
Q Consensus       420 ~~  421 (496)
                      ..
T Consensus       393 ~k  394 (460)
T KOG1122|consen  393 VK  394 (460)
T ss_pred             eE
Confidence            54

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	496
3ld8_A	334	Structure Of Jmjd6 And Fab Fragments Length = 334		3e-52
3k2o_A	336	Structure Of An Oxygenase Length = 336		3e-52

>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments Length = 334

Iteration: 1
 Score =  202 bits (515), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 103/112 (91%)
Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
           WCLFPT TP++L+KVT  EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 206 WCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 265
Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
           FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 266 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILK 317

>pdb|3K2O|A Chain A, Structure Of An Oxygenase Length = 336

Iteration: 1
 Score =  202 bits (514), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 103/112 (91%)
Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
           WCLFPT TP++L+KVT  EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 207 WCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 266
Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLK 494
           FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK
Sbjct: 267 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILK 318

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	1e-54
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	5e-32
3uyj_A	248	Lysine-specific demethylase 8; jellyroll-like all	4e-23
3uyj_A	248	Lysine-specific demethylase 8; jellyroll-like all	9e-16
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	8e-15
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	2e-07
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	2e-14
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	5e-10
3kv5_D	488	JMJC domain-containing histone demethylation prote	2e-13
3kv5_D	488	JMJC domain-containing histone demethylation prote	1e-06
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	3e-13
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	5e-07
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	9e-12
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	3e-04
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	1e-11
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	8e-06
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	4e-11
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	3e-07
3kv9_A	397	JMJC domain-containing histone demethylation prote	5e-11
3kv9_A	397	JMJC domain-containing histone demethylation prote	4e-09
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	3e-10
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	1e-05
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	2e-09
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-06
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	2e-06
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	2e-06
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	2e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-04
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	2e-04
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	5e-04
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	6e-04
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	7e-04

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336

 Score =  185 bits (471), Expect = 1e-54
 Identities = 101/194 (52%), Positives = 129/194 (66%), Gaps = 10/194 (5%)

Query: 11  LDSRARKRIKETKKRARPELNGKDAWFELGYADKFD-KFKIVKENVERIHVKDYSPQEFI 69
           ++ +++KRI+E K+ ARPEL     W    Y + F      V +NVER      S +EF+
Sbjct: 2   MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFV 61

Query: 70  EKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYS---KLG----- 121
           E+YE+P KPVV+    E W+A  KWTLE+L +KYRNQKFKCGEDN GYS   K+      
Sbjct: 62  ERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEY 121

Query: 122 -KKYRNQKFKCGEDNHGYSHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPA 180
            +  R+       D+    HP+R+KLL+DY+VP +F DDLFQYAGE +RPPYRWFVMGP 
Sbjct: 122 MESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPP 181

Query: 181 RSGTGIHIDPLGTN 194
           RSGTGIHIDPLGT+
Sbjct: 182 RSGTGIHIDPLGTS 195

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336

 Score =  124 bits (312), Expect = 5e-32
 Identities = 88/113 (77%), Positives = 103/113 (91%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
           WCLFPT TP++L+KVT  EGG Q+DEAITWF++IYPRTQLP+WP E+KPLE++Q PGETV
Sbjct: 207 WCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETV 266

Query: 443 FVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWYRKLKT 495
           FVPGGWWHVVLNLDTT+A+TQNF S TNFPVV+HKT+RGRPKLS+KWYR LK 
Sbjct: 267 FVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILKQ 319

>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold, nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB: 4aap_A* Length = 248

 Score = 97.5 bits (243), Expect = 4e-23
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 51  VKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKC 110
           +++ V R+H    S Q F E++  P +PV++KGV ++W    KW+LE + +    +    
Sbjct: 12  LEKTVPRLH--RPSLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPV 69

Query: 111 GEDNHGYSKLGKKYRNQKFK--------CGEDNHGY--SHPRRK---KLLDDYEVPIYFQ 157
            E    Y+                        + GY   H       +L  D  +P Y  
Sbjct: 70  -EVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCS 128

Query: 158 DDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDP 190
                    ++         GP  + + +H DP
Sbjct: 129 LGDG-----EEEEITINAWFGPQGTISPLHQDP 156

>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold, nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB: 4aap_A* Length = 248

 Score = 76.0 bits (187), Expect = 9e-16
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
             L+       L    +           +   +  P  +      +   L  +  PGE +
Sbjct: 170 IRLYSPQESGALYPHDTHLLHN-----TSQVDVENPDLEKFPKFAKAPFLSCILSPGEIL 224

Query: 443 FVPGGWWHVVLNLDTTVAVTQNF 465
           F+P  +WH V  LD + +V+  +
Sbjct: 225 FIPVKYWHYVRALDLSFSVSFWW 247

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Length = 349

 Score = 74.7 bits (183), Expect = 8e-15
 Identities = 21/189 (11%), Positives = 46/189 (24%), Gaps = 35/189 (18%)

Query: 32  GKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNAT 91
              A        +   +      + R+           E+  +  +PVV+      + A 
Sbjct: 19  EAGALGPAWDESQLRSYSFPTRPIPRLS----QSDPRAEELIENEEPVVLTDTNLVYPA- 73

Query: 92  YKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYS------------ 139
            KW LE L +   N  F     +        + +   F+  +                  
Sbjct: 74  LKWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQ 133

Query: 140 ------------------HPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPAR 181
                                 +K++ D+    +   +  Q      +      ++G   
Sbjct: 134 DIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEG 193

Query: 182 SGTGIHIDP 190
           + T  H   
Sbjct: 194 NVTPAHYGE 202

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Length = 349

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETV 442
             LFP     + L          R   + + +  Y R             E V GPG+ +
Sbjct: 216 CILFPPDQ-FECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNV---VGYETVVGPGDVL 271

Query: 443 FVPGGWWHVVLNLDTT-VAVTQNF-------CSHTNFPVVYHKTIRGRPKLSK 487
           ++P  WWH + +L    + +T NF            +P+  H+ +     + K
Sbjct: 272 YIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEK 324

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Length = 338

 Score = 73.1 bits (179), Expect = 2e-14
 Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 26/159 (16%)

Query: 55  VERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFK---CG 111
           V R+     S ++F++      KP+V++G+ +    T KWT++ L +    ++ K     
Sbjct: 31  VPRLE--GVSREQFMQHLYPQRKPLVLEGI-DLGPCTSKWTVDYLSQVGGKKEVKIHVAA 87

Query: 112 EDNHGYSKLGKKYRNQKFK---------------CGEDNHGYSHPRRKKLLDDY-----E 151
                +      YR   F                  ED   Y     +    D      +
Sbjct: 88  VAQMDFISKNFVYRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQ 147

Query: 152 VPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDP 190
            P+   D  F    ++++     F +         H D 
Sbjct: 148 FPLLKGDIKFPEFFKEEQFFSSVFRISSPGLQLWTHYDV 186

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Length = 338

 Score = 60.0 bits (145), Expect = 5e-10
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 430 KPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNF 471
           +  E     G+ +F+P  W+H V++ +  V V   +    + 
Sbjct: 238 RRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPSE 279

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 14/95 (14%)

Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
           ++ L    T ++L +  S      + E   +F                K  + V   G T
Sbjct: 300 IFYLIKP-TDENLARYESWSSSVTQSE--VFFGDKVD-----------KCYKCVVKQGHT 345

Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
           +FVP GW H VL     +A   NF  + N  +   
Sbjct: 346 LFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLR 380

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 144 KKLLDDYEVPIYFQD-DLFQY-----AGEDKRPPYRWFVMGPARSGTGIHIDPLGT 193
            K+ +  EVP   +     +      +   K    ++ +MG   S T  HID  GT
Sbjct: 233 TKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGT 288

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447

 Score = 70.8 bits (172), Expect = 3e-13
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 14/95 (14%)

Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
           ++ L    T  +L           ++E   +F                K  +     G+T
Sbjct: 265 IFYLIRP-TNANLTLFECWSSSSNQNE--MFFGDQVD-----------KCYKCSVKQGQT 310

Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
           +F+P GW H VL     +A   NF    N  +   
Sbjct: 311 LFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLK 345

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447

 Score = 51.1 bits (121), Expect = 5e-07
 Identities = 19/176 (10%), Positives = 46/176 (26%), Gaps = 16/176 (9%)

Query: 33  KDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIK-----GVTEN 87
                   +  +         +   +            +    + P+++      G+T  
Sbjct: 79  PVKTGSPTFVRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGLGMTLP 138

Query: 88  WNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGY----SHPRR 143
             +     +E      +                   +  + +  G+              
Sbjct: 139 SPSFTVRDVEHYVGSDKEIDVIDVTRQADCKMKLGDF-VKYYYSGKREKVLNVISLEFSD 197

Query: 144 KKLLDDYEVPIYFQ-----DDLFQYAGEDKRPPY-RWFVMGPARSGTGIHIDPLGT 193
            +L +  E P   +     ++L+      +RP   ++ +M    S T  HID  GT
Sbjct: 198 TRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGT 253

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528

 Score = 66.3 bits (160), Expect = 9e-12
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 14/95 (14%)

Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
           ++ +    T ++     + E         TWF                K   +V   G+T
Sbjct: 330 IFYIAAP-TEQNFAAYQAHETSPDTT---TWF--------GDIANGAVK--RVVIKEGQT 375

Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
           + +P GW H VL    ++    NF    N  +   
Sbjct: 376 LLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMR 410

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 36  WFELGYADKFDKFKIVKE-NVERIHVKDYSPQ-EFIEKYEKPNKPVVIKGVTENWNATYK 93
           + +LG AD + K  +VK+ +   + +       E + K    +  V    V     +TY 
Sbjct: 160 FEKLGGADNWGKVFMVKDMDGLNMTMPKPGFDLEDVVKIMGSDYEVDTIDVYNQ--STYS 217

Query: 94  WTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSHP---RRKKLLDDY 150
             L+   K +R+ K +    N    +       ++            P   +   +++  
Sbjct: 218 MKLDTFRKLFRDTKNRPLLYNFLSLEFSDNNEMKEI--------AKPPRFVQEISMVNRL 269

Query: 151 EVPIYFQDDLFQ-----YAGEDKRPPYRWFV-MGPARSGTGIHIDPLGT 193
              +   + +       Y  ED+RP    F   G A S T  H+D  G+
Sbjct: 270 WPDVSGAEYIKLLQREEYLPEDQRPKVEQFCLAGMAGSYTDFHVDFGGS 318

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371

 Score = 65.5 bits (159), Expect = 1e-11
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 14/95 (14%)

Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
           ++ L    T  +L           ++E   +F                K  +     G+T
Sbjct: 181 IFYLIRP-TNANLTLFECWSSSSNQNE--MFF-----------GDQVDKCYKCSVKQGQT 226

Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
           +F+P GW H VL     +A   NF    N  +   
Sbjct: 227 LFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLK 261

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 144 KKLLDDYEVPIYFQD-----DLFQYAGEDKRPPY-RWFVMGPARSGTGIHIDPLGTN 194
            +L +  E P   +      +L+      +RP   ++ +M    S T  HID  GT+
Sbjct: 114 TRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTS 170

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392

 Score = 63.7 bits (154), Expect = 4e-11
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 14/97 (14%)

Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
            + L       ++             E   +F+               K  + +   G+T
Sbjct: 208 TFYLIR-PASANISLYERWRSASNHSE--MFFADQVD-----------KCYKCIVKQGQT 253

Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKT 478
           +F+P GW +  L     +A   +F    +  +     
Sbjct: 254 LFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAY 290

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 30/210 (14%), Positives = 65/210 (30%), Gaps = 36/210 (17%)

Query: 7   TSKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQ 66
           T K   +  +    +     +P  NG   + +     +   F   ++ V R+     +  
Sbjct: 2   TLKKKRTWHKHGPGQAPDV-KPVQNGSQLFIK---ELRSRTFPSAEDVVARVPGSQLT-L 56

Query: 67  EFIEKYEKPNKPVVIK---GVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKK 123
            ++E++    +P+++    G+     A   +  +        +     +          K
Sbjct: 57  GYMEEH-GFTEPILVPKKDGLGLAVPAPTFYVSDVENYVGPERSVDVTD--------VTK 107

Query: 124 YRNQKFKCGEDNHGYSHPRRKKLL-------------DDYEVPIYFQD-DLFQY-----A 164
            ++ K K  E    Y    RK++L                E P   +     +      A
Sbjct: 108 QKDCKMKLKEFVDYYYSTNRKRVLNVTNLEFSDTRMSSFVEPPDIVKKLSWVENYWPDDA 167

Query: 165 GEDKRPPYRWFVMGPARSGTGIHIDPLGTN 194
              K    ++ ++    S T  HID  G +
Sbjct: 168 LLAKPKVTKYCLICVKDSYTDFHIDSGGAS 197

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397

 Score = 63.7 bits (154), Expect = 5e-11
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 421 QLPSWPTEWKP--LELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
           Q   +  +      + V   G T+FVP GW H VL     +A   NF  + N  +   
Sbjct: 232 QSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLR 289

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397

 Score = 57.5 bits (138), Expect = 4e-09
 Identities = 28/202 (13%), Positives = 61/202 (30%), Gaps = 19/202 (9%)

Query: 7   TSKVLDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQ 66
             K   +  R    E    ++P   G   + +     +   F    E + ++H    + Q
Sbjct: 2   LMKKRRNWHRHDYTEIDDGSKPVQAGTRTFIKE---LRSRVFPSADEIIIKMHGSQLT-Q 57

Query: 67  EFIEKYEKPNKPVVIK---GVTENWNATYKWTLEKLGKKYRNQKFK---CGEDNHGYSKL 120
            ++EK+   + P+++     +     +     ++       ++                L
Sbjct: 58  RYLEKH-GFDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTL 116

Query: 121 GKKYRNQKFKCGED--NHGYSHPRRKKLLDDYEVPIYFQD-DLFQY-----AGEDKRPPY 172
               +           N         K+ +  EVP   +     +      +   K    
Sbjct: 117 HNYVKYFMNPNRPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQ 176

Query: 173 RWFVMGPARSGTGIHIDPLGTN 194
           ++ +MG   S T  HID  GT+
Sbjct: 177 KYCLMGVQDSYTDFHIDFGGTS 198

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451

 Score = 61.1 bits (147), Expect = 3e-10
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 14/95 (14%)

Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
           V+ L P  T  +L    +      + +   +              ++ + +E     G T
Sbjct: 230 VFWLIPP-TAHNLELYENWLLSGSQGD--IFL---------GDRVSDCQRIE--LKQGYT 275

Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYH 476
             +P GW H V     T+    NF    N P+   
Sbjct: 276 FVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLK 310

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 22/137 (16%)

Query: 67  EFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRN 126
             ++      + V +  V  N     + T+ +  + Y   +    E    Y+ +  ++ +
Sbjct: 96  NDVKMCVGSRRMVDVMDV--NTQKGIEMTMAQWTRYYETPE---EEREKLYNVISLEFSH 150

Query: 127 QKFKCGEDNHGYSHPRRKKLLDDYEVPIYF--------QDDLFQYAGEDKRPPYRWFV-M 177
            + +        +  +R   +D  +             Q +      E + P  + +  M
Sbjct: 151 TRLE--------NMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLM 202

Query: 178 GPARSGTGIHIDPLGTN 194
                 T  H+D  GT+
Sbjct: 203 SVRGCYTDFHVDFGGTS 219

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 14/129 (10%)

Query: 268 GYKIWECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIE 326
              +W     L + +      +   +V ++G GAGL+ +   + GA  V   DY    I 
Sbjct: 57  TSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEIL 116

Query: 327 SLTLPNILMNTDNL--------EKCKFYHGDWGSLSAVIHS-----KFDIILTSETIYSV 373
           +    NI  +T N            K     WG     +       +F ++L ++ +   
Sbjct: 117 NSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH 176

Query: 374 ANYNKLLTV 382
             ++ LL  
Sbjct: 177 QAHDALLRS 185

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 7/174 (4%)

Query: 272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP 331
           W   F     + +     +  +L +GCG   L     + G  +V+  DY+  V+      
Sbjct: 25  WFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVA----- 79

Query: 332 NILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTP 391
            +     ++ + ++   D   L     + FD++L   T+ ++    +          HT 
Sbjct: 80  AMQACYAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTV 138

Query: 392 KDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWP-TEWKPLELVQGPGETVFV 444
             +L   S              +  + RT+  +     W       G G    +
Sbjct: 139 DQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHATYGSGFHFHL 192

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 292 SVLDVGCGAGLLGLYTL-MNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW 350
            ++D+GCG G++GL  L  N  A V F D +   + S  L       + L++C+F   + 
Sbjct: 225 EIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 284

Query: 351 GSLSAVIHSKFDIILT 366
             LS V   +F+ +L 
Sbjct: 285 --LSGVEPFRFNAVLC 298

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG 351
            +LD+GCG G++G+  L +     +  D N+  I+     NI +N  +    +  H D  
Sbjct: 55  DILDLGCGYGVIGI-ALADEVKSTTMADINRRAIKL-AKENIKLNNLDNYDIRVVHSDL- 111

Query: 352 SLSAVIHSKFDIILT 366
               V   K++ I+T
Sbjct: 112 -YENVKDRKYNKIIT 125

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 15/97 (15%)

Query: 279 LNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
           +  I+  +     +V DVG G+G+L +     GA  V   D + E + +    N  +N  
Sbjct: 51  MLGIERAMVKPL-TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA-AEENAALN-- 106

Query: 339 NLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVAN 375
            +            L A +  KFD+I        VAN
Sbjct: 107 GIYDIALQKTS---LLADVDGKFDLI--------VAN 132

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 26/177 (14%), Positives = 63/177 (35%), Gaps = 23/177 (12%)

Query: 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT 337
           L  F    +   K  ++D+  G G++ L       A +   +  + + + +   ++  N 
Sbjct: 40  LAKFSYLPIRKGK--IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLAD-MAKRSVAYN- 95

Query: 338 DNLEKCKFYHGDWGSLSAVI-HSKFDIILTS-----ETIYSVANYNKLLTVWCLFPTHTP 391
              ++ +    D   ++ +I   + DI+  +         S+ N N+   +       T 
Sbjct: 96  QLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTL 155

Query: 392 KDLLKVTSA---EGGK--------QRDEAITWFSI--IYPRTQLPSWPTEWKPLELV 435
           +D ++V ++   +GGK        +  + I       + P+      P   +    V
Sbjct: 156 EDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTV 212

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 81/525 (15%), Positives = 140/525 (26%), Gaps = 148/525 (28%)

Query: 33  KDAWFELGYADKFDKFKIVKENVERIHVKDYSPQE----FIEKYEKPNKPVVIKGVTENW 88
            +  F+        K  + KE ++ I +                    + +V K V E  
Sbjct: 31  DN--FDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 89  NATYKWTLEKLGKKYRNQKFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSH---PR--- 142
              YK+ +  +  + R             S + + Y  Q+ +   DN  ++     R   
Sbjct: 88  RINYKFLMSPIKTEQRQP-----------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 143 ----RKKL--------------------------LDDYEVPIYFQDDLFQYAGEDKRPPY 172
               R+ L                             Y+V       +F           
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF----------- 185

Query: 173 RWFVMGPARSGTGI---------HIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNII 223
            W  +    S   +          IDP  T+  D            +        L  ++
Sbjct: 186 -WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE------LRRLL 238

Query: 224 SELGKQVEN----LTSVSNIKLLRTPLFEYE--TFV---NISHTD-LKPNVYEGGYKIWE 273
               K  EN    L +V N K      F       +       TD L             
Sbjct: 239 KS--KPYENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATT-------- 286

Query: 274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNI 333
                               L       LL  Y           QD  +EV+   T P  
Sbjct: 287 ---------THISLDHHSMTLTPDEVKSLLLKY------LDCRPQDLPREVLT--TNPRR 329

Query: 334 L-----MNTDNLEKCKFY-HGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFP 387
           L        D L     + H +   L+ +I S  +++  +E       +++L     +FP
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY---RKMFDRL----SVFP 382

Query: 388 --THTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVP 445
              H P  LL +   +  K     +          +L         L   Q    T+ +P
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVV--------NKLHK-----YSLVEKQPKESTISIP 429

Query: 446 GGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRPKLSKKWY 490
             +  + + L+   A+ ++   H N P  +       P L + +Y
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 18/113 (15%), Positives = 47/113 (41%), Gaps = 14/113 (12%)

Query: 268 GY-KIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTL-MNGAAHVSFQDYNQEVI 325
            +   +  +  + +   +N       +LD+G G GLL  + +     A  +  D +++++
Sbjct: 27  CFDDFYGVSVSIASVDTEN-----PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKML 81

Query: 326 ESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNK 378
           E               K K+   D+         K+D+++++ +I+ + + +K
Sbjct: 82  E-----IAKNRFRGNLKVKYIEADYSKYD--FEEKYDMVVSALSIHHLEDEDK 127

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 16/113 (14%)

Query: 278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT 337
           LL        ++   V D+G G G+L    L+ GA  V   + ++E ++ L         
Sbjct: 38  LLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVL--------I 89

Query: 338 DNLE----KCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLF 386
           +NL     K K + GD    ++    + DI++ +    S   +     +   F
Sbjct: 90  ENLGEFKGKFKVFIGDVSEFNS----RVDIVIMNPPFGSQRKHADRPFLLKAF 138

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 14/127 (11%)

Query: 247 FEYETFVNI--SHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLG 304
           FE     +   +     P    G  ++       ++ + +        + D+GCG G   
Sbjct: 11  FELNLICDFFSNMERQGP----GSPEVTLKALSFIDNLTEK-----SLIADIGCGTGGQT 61

Query: 305 LYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDII 364
           +    +    V+  D+    I+            N  +     G    L        D+I
Sbjct: 62  MVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQN--RVTGIVGSMDDLPFRNEE-LDLI 118

Query: 365 LTSETIY 371
            +   IY
Sbjct: 119 WSEGAIY 125

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 15/172 (8%)

Query: 293 VLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS 352
            LD+GCG G   LY   NG   V   D N   I ++     + + +NL+       D  +
Sbjct: 36  TLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANV---ERIKSIENLDNLHTRVVDLNN 91

Query: 353 LSAVIHSKFDIILTSETIYSV--ANYNKLLT--VWCLFPTHTPKDLLKVTSAEGGKQRDE 408
           L+     ++D IL++  +  +       L+     C  P       L V + +       
Sbjct: 92  LT--FDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG---GYNLIVAAMDTADYPCT 146

Query: 409 AITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVA 460
               F   +   +L  +   W+ ++  +  GE          + L   T +A
Sbjct: 147 --VGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLA 196

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 273 ECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN 332
              + L+    D     + SV+D G G G+L   + + GA  V+  D + + IE+     
Sbjct: 36  TAAYFLIEIYNDGNIGGR-SVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETA---- 90

Query: 333 ILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS 367
                 N     F   D   +S     K+D  + +
Sbjct: 91  ----KRNCGGVNFMVADVSEISG----KYDTWIMN 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	100.0
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	100.0
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	100.0
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	99.97
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	99.97
3kv9_A	397	JMJC domain-containing histone demethylation prote	99.97
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	99.96
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	99.96
3kv5_D	488	JMJC domain-containing histone demethylation prote	99.96
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	99.94
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	99.8
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	99.53
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.49
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.4
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.34
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.32
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.3
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.29
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.28
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.28
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.28
2ypd_A	392	Probable JMJC domain-containing histone demethyla	99.28
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.27
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.27
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.27
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.26
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.26
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.26
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.24
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.24
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.24
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.23
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.23
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.22
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.22
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.21
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.21
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.21
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.2
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.2
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.18
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.18
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.18
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.17
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.17
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.17
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.17
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.17
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.17
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.17
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.16
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.16
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.15
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.15
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.15
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.15
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.14
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.14
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.13
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.13
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.13
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.12
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.12
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.12
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.12
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.12
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.12
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.11
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.11
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.11
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.11
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.11
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.11
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.11
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.11
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.1
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.1
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.1
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	99.1
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.1
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.09
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.09
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.09
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.08
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.07
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.06
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.06
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.06
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.05
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.05
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.05
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.04
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.04
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.04
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.04
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.04
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.03
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.03
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.03
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.03
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.02
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.02
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.02
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.01
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.01
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.0
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.0
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.0
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.99
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.99
3ocj_A	305	Putative exported protein; structural genomics, PS	98.99
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.99
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.98
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.97
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.97
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.97
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.97
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.97
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.97
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.96
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.95
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.95
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.95
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.95
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.95
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.95
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.94
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.94
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.93
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.93
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.93
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.93
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.92
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.92
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.92
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.92
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.91
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.91
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.9
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.89
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.89
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.88
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.88
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.88
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.87
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.87
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.87
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.86
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.85
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.85
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.85
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.84
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.83
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.83
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.83
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.83
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.83
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.82
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.82
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.81
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.81
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.81
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.81
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.8
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.8
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.8
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.8
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.8
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.8
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.79
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.78
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.78
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.78
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.77
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.77
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.76
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.75
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.75
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.74
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.74
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.74
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.73
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.73
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.71
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.71
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.71
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.71
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.71
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.71
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.7
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.7
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.7
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.7
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.69
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.69
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.69
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.69
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.69
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.68
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.68
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.67
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.67
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.67
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.67
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.66
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.66
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.66
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.66
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.65
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.65
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.65
4diq_A	489	Lysine-specific demethylase NO66; structural genom	98.65
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.65
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.65
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.65
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.64
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.64
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.63
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.63
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.63
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.62
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.62
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.61
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.6
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.6
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.6
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.6
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.6
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.59
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.59
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.58
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.58
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.58
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.58
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.57
2o07_A	304	Spermidine synthase; structural genomics, structur	98.56
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.56
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.56
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.55
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.55
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.55
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.54
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.54
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.54
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.54
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.53
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.53
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.52
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.52
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.52
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.52
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.52
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.51
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.51
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.5
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.5
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.49
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.49
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.48
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.48
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.48
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.48
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.48
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.47
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.47
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.46
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.45
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.41
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.41
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.4
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.37
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.37
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.35
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.34
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.34
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.29
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.27
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.26
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.25
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.23
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.22
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.18
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.08
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.08
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.0
3lkd_A	542	Type I restriction-modification system methyltrans	97.87
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.85
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.81
2xxz_A	332	Lysine-specific demethylase 6B; oxidoreductase, hi	97.8
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.79
3khk_A	544	Type I restriction-modification system methylation	97.74
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.73
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.67
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.59
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.57
3avr_A	531	Lysine-specific demethylase 6A; cupin superfamily,	97.56
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.32
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.32
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.31
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.15
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.13
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.96
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.87
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.85
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.79
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.61
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.56
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	96.55
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.5
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.48
3ufb_A	530	Type I restriction-modification system methyltran	96.45
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.4
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.26
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.2
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.02
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.94
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.78
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.53
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	95.25
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	94.95
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.84
4ask_A	510	Lysine-specific demethylase 6B; oxidoreductase, KD	94.45
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.04
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.72
3me5_A	482	Cytosine-specific methyltransferase; structural ge	93.64
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	93.12
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	92.85
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	92.03
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	91.81
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	90.19
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	86.38
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	83.87
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	82.33
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	82.17

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=100.00  E-value=6e-62  Score=488.90  Aligned_cols=308  Identities=62%  Similarity=1.138  Sum_probs=266.4

Q ss_pred             cchHHHHhhHHhhhcCCCCCCCcccccccCcccccccccc-CCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCCCCCc
Q psy11730         11 LDSRARKRIKETKKRARPELNGKDAWFELGYADKFDKFKI-VKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWN   89 (496)
Q Consensus        11 ~~~~~~~~~~~~k~~~r~~~~~~~~w~~~~~~~~~~~~~~-~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~~Wp   89 (496)
                      |++|++|||++||+|+||||..+.+|.+++|++++..++. ..++|+||+++.+|+++|.++|+.+++||||+|++.+||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~I~Ri~~~~lS~eeF~~~y~~~~~PvVi~g~~~~Wp   81 (336)
T 3k2o_A            2 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFVERYERPYKPVVLLNAQEGWS   81 (336)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCSHHHHHTTCHHHHCCCCGGGCCCCCCEEEGGGCCHHHHHHHTTTTTCCEEEESTTTTCT
T ss_pred             CchHHHHHHHHHHHhcCccccccccccccchhhhhhhchhhcCCCCCEecCCCCCHHHHHHHhhccCCCEEEeCCcCCCh
Confidence            7899999999999999999998899999999999987764 789999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHhhcCCeeEEeeecCCCcc-ccCHHHHHHHhhcCCCC-CCCCcc-------ccccccccCCCCCCCchhh
Q psy11730         90 ATYKWTLEKLGKKYRNQKFKCGEDNHGYS-KLGKKYRNQKFKCGEDN-HGYSHP-------RRKKLLDDYEVPIYFQDDL  160 (496)
Q Consensus        90 A~~~Wt~~~L~~~~g~~~v~v~~~~~~~~-~m~~~~f~~~~~~~~~~-p~y~~~-------~~~~L~~d~~~P~~f~~d~  160 (496)
                      |+++||.+||+++||+..|+|+..+.++. +|+|++|++++.+..++ |+|+++       ..|+|.+||.+|++|.+|+
T Consensus        82 A~~~Wt~~yL~~~~G~~~V~v~~~~~~~~~~m~~~~fl~~~~~~~~~~~lYL~d~~~~e~~~~p~L~~dy~~P~~f~~d~  161 (336)
T 3k2o_A           82 AQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDL  161 (336)
T ss_dssp             HHHHCSHHHHHHHSTTCEEEEEECTTSCEEEEEHHHHHHHHHHCCCSSCCCEEESCGGGSTTGGGGGGGCCCCGGGCCCG
T ss_pred             hHhhhhHHHHHHHhCCceEEEEecCCCceeeecHHHHHHHHHhcCCCCCceEecccccccccchhHHHhcCCCcccccch
Confidence            99999999999999999999998777777 99999999999988776 888753       3589999999999999999


Q ss_pred             hcccCCCCCCCccceEecCCCCccccccCCCCCCCcccccCCCCCccccCCCCChhHHHHHHHHHhccccccccccccch
Q psy11730        161 FQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNPDDGDVKDDSPAVESKEFKPIDEILTNIISELGKQVENLTSVSNIK  240 (496)
Q Consensus       161 ~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (496)
                      |++.++..+|+++|+|||++||+|++|+|++++++|++++.|+                                     
T Consensus       162 ~~~~~~~~~p~~~~~~~G~~gs~t~~H~D~~~~~~~~~~v~G~-------------------------------------  204 (336)
T 3k2o_A          162 FQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGH-------------------------------------  204 (336)
T ss_dssp             GGGGCTTTSCCCEEEEEECTTCEEEEECCGGGCEEEEEEEESC-------------------------------------
T ss_pred             hhhcccccCCCceEEEECCCCccCCcccCCCccceeeEEEeee-------------------------------------
Confidence            9988887899999999999999999999999998866666655                                     


Q ss_pred             hcccCCccccceeecccccCCCccccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeC
Q psy11730        241 LLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDY  320 (496)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~  320 (496)
                                                                                                      
T Consensus       205 --------------------------------------------------------------------------------  204 (336)
T 3k2o_A          205 --------------------------------------------------------------------------------  204 (336)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccccchHhHhheeeecCCCCCcccEEEeec
Q psy11730        321 NQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTHTPKDLLKVTSA  400 (496)
Q Consensus       321 s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~  400 (496)
                                                                                  |.|.|+|+.....+......
T Consensus       205 ------------------------------------------------------------K~~~L~pP~~~~~ly~~~~~  224 (336)
T 3k2o_A          205 ------------------------------------------------------------KRWCLFPTSTPRELIKVTRD  224 (336)
T ss_dssp             ------------------------------------------------------------EEEEEECTTSCHHHHCCCHH
T ss_pred             ------------------------------------------------------------EEEEEeCCCcchhcccCccc
Confidence                                                                        33334444322111111111


Q ss_pred             cCCcccccccchhhHhcCCCCCCCCCCCCCchhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCCCChhhHHHHhhc
Q psy11730        401 EGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIR  480 (496)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~~~~~~~~~~~~  480 (496)
                      .++......++|+...|+......||...++++++++|||+||||.||||+|.++++||+|++||++..|++.+|++|++
T Consensus       225 ~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~  304 (336)
T 3k2o_A          225 EGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVR  304 (336)
T ss_dssp             HHGGGTTCHHHHHHHTGGGGGSTTSCGGGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHH
T ss_pred             ccCCCccchhhhhhhhCcchhhhcccccCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHh
Confidence            11111234567888888877777788788999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhHHHHHHHhc
Q psy11730        481 GRPKLSKKWYRKLKT  495 (496)
Q Consensus       481 ~~~~~~~~~~~~~~~  495 (496)
                      |||||+++|+++|++
T Consensus       305 ~~p~~~~~~~~~~~~  319 (336)
T 3k2o_A          305 GRPKLSRKWYRILKQ  319 (336)
T ss_dssp             HCHHHHHHHHHHHHH
T ss_pred             hChHHHHHHHHHHHH
Confidence            999999999999986

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=100.00  E-value=1.9e-36  Score=312.16  Aligned_cols=151  Identities=15%  Similarity=0.156  Sum_probs=118.6

Q ss_pred             cCCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCCCCCcC---CCCCCHHHHHhhcC-CeeEEeeecCCCcc-ccCHHH
Q psy11730         50 IVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNA---TYKWTLEKLGKKYR-NQKFKCGEDNHGYS-KLGKKY  124 (496)
Q Consensus        50 ~~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA---~~~Wt~~~L~~~~g-~~~v~v~~~~~~~~-~m~~~~  124 (496)
                      ...+.|+|++.+++|. +|+++ ..+++||||+|+ ++|||   .++||.+||++++| +..|.|.++..++. +|+|++
T Consensus        49 ~~~~~V~ri~~~~Ls~-EF~~~-~~~nkPVVIt~~-~~Wpa~~P~~kWt~dyL~~~~G~d~~V~V~D~~~q~~~~M~l~e  125 (451)
T 2yu1_A           49 YNANFVTFMEGKDFNV-EYIQR-GGLRDPLIFKNS-DGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQ  125 (451)
T ss_dssp             CBCCCCEECCGGGCSH-HHHHH-HCSCSCEEESSC-TTTTCBCCCTTCCHHHHHHHTCTTCCCCCEETTSSCCTTCCHHH
T ss_pred             CCCCceEecccccCCH-HHHHh-cCCCCcEEEccC-cCCCCcCCcCCCCHHHHHHHcCCCceEeeEEcCCCcceeeeHHH
Confidence            3578999999999999 99998 678999999999 99999   78999999999999 58899987777666 999999


Q ss_pred             HHHHhhcCCCC--CCCC-----cc--------ccccccccCC-CCCCCch-------hhhcccCCCCCCCc-cceEecCC
Q psy11730        125 RNQKFKCGEDN--HGYS-----HP--------RRKKLLDDYE-VPIYFQD-------DLFQYAGEDKRPPY-RWFVMGPA  180 (496)
Q Consensus       125 f~~~~~~~~~~--p~y~-----~~--------~~~~L~~d~~-~P~~f~~-------d~~~~~~~~~~p~~-~w~~iG~~  180 (496)
                      |++|+.+..++  |+|+     ++        ..|.|.+++. +|.+|.+       |+|+.+++..+|++ +|+||||+
T Consensus       126 yidy~~~~~d~r~~LY~v~sLeF~~~~l~~~~~~P~l~~d~Dwv~~~~p~~l~~~~~d~f~~lge~~rP~~~r~~~mGp~  205 (451)
T 2yu1_A          126 WTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVR  205 (451)
T ss_dssp             HHHHHTSCTTTCCSCEEEEEECCTTSTTGGGCBCCHHHHHHCHHHHHSCGGGCC-----------CCSCCCCCEEEEECT
T ss_pred             HHHHHhhccccccchhhhcccccccccccccccCchhhhhhhcccccCchhhhhhhhhhhhhcccccCCchheEEEEccC
Confidence            99999988754  6665     22        2355555542 3333433       66777777788998 99999999


Q ss_pred             CCccccccCCCCCCCcccccCCC
Q psy11730        181 RSGTGIHIDPLGTNPDDGDVKDD  203 (496)
Q Consensus       181 gs~T~lH~D~~~~~~~~~~~~~~  203 (496)
                      ||+|++|+|++++++|++++.|+
T Consensus       206 gS~T~~H~D~~~ts~w~avi~Gr  228 (451)
T 2yu1_A          206 GCYTDFHVDFGGTSVWYHIHQGG  228 (451)
T ss_dssp             TCEEEEECCGGGCEEEEEEEESC
T ss_pred             CCCCCeEECCCCcchhhheecce
Confidence            99999999999999988888766

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=100.00  E-value=1.1e-34  Score=278.59  Aligned_cols=135  Identities=23%  Similarity=0.327  Sum_probs=109.7

Q ss_pred             ceeeecCCCCCHHHHHHHhcCCCCcEEEecCCCCCcCCCCCCHHHHHhhcCCeeEEeeecCC----C--ccccCHHHHHH
Q psy11730         54 NVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNH----G--YSKLGKKYRNQ  127 (496)
Q Consensus        54 ~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~~L~~~~g~~~v~v~~~~~----~--~~~m~~~~f~~  127 (496)
                      +|+|++  .+|+++|+++|+.+++||||+|++.+|||+++||.+||++++|+..|++.....    .  ...|+|++|++
T Consensus         2 tipri~--~pS~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~~~yL~~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~   79 (235)
T 4gjz_A            2 TVPRLH--RPSLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFIS   79 (235)
T ss_dssp             BCCEEE--SCCHHHHHHHTTTTTCCEEEESSSTTSHHHHHCSHHHHHHHHTTSEEEEEEC-------CEEEEEEHHHHHH
T ss_pred             CCCCCC--CCCHHHHHHHHhcCCCcEEEeCCCcCCcccccCCHHHHHHHcCCCeEEEEecCcccCCccceeeccHHHHHH
Confidence            799985  599999999999999999999999999999999999999999999999874322    1  12899999999


Q ss_pred             HhhcCCCC-CCCC-----ccccccccccCCCCCCCchhhhcccCCCCCCCccceEecCCCCccccccCCCCCCC
Q psy11730        128 KFKCGEDN-HGYS-----HPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNP  195 (496)
Q Consensus       128 ~~~~~~~~-p~y~-----~~~~~~L~~d~~~P~~f~~d~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~~~  195 (496)
                      .+...... +.|+     ....++|.+|+.+|.++..+.+     ...+...++|||++||+|++|+|++.|.+
T Consensus        80 ~~~~~~~~~~~y~~~~~~~~~~~~l~~d~~~p~~~~~~~~-----~~~~~~~~~wiG~~gs~t~~H~D~~~n~~  148 (235)
T 4gjz_A           80 KYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDG-----EEEEITINAWFGPQGTISPLHQDPQQNFL  148 (235)
T ss_dssp             HHTSSCCSSCEEEEEECHHHHCHHHHTTCCCCGGGGGSSS-----CGGGCEEEEEEECTTCEEEEECCSSEEEE
T ss_pred             HHhhcCCcccceeehhhhhhhhHHHHHhhcCCcccccccc-----ccCccceEEEEeCCCCCceeeeccccceE
Confidence            87766554 4443     3456899999999987654432     13455678899999999999999987765

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=99.97  E-value=1.4e-31  Score=268.01  Aligned_cols=152  Identities=13%  Similarity=0.076  Sum_probs=123.4

Q ss_pred             ccCCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCC---CCCcCCCCCCHHHHHhhcC-CeeEEeeecCCCcc-ccCHH
Q psy11730         49 KIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVT---ENWNATYKWTLEKLGKKYR-NQKFKCGEDNHGYS-KLGKK  123 (496)
Q Consensus        49 ~~~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~---~~WpA~~~Wt~~~L~~~~g-~~~v~v~~~~~~~~-~m~~~  123 (496)
                      +++.+-|.||+.+++|.+.|.++..  ++||||++..   ..||+. +||.+++++.+| |..|+|.++..... +|+|+
T Consensus        13 ~~~~~~v~~i~~~d~t~~y~~~~~~--~~Pvli~~~~glg~~~P~~-~~tv~~v~~~vG~d~~V~ViDv~~Q~~~~M~l~   89 (371)
T 3k3o_A           13 DSSDEVILKPTGNQLTVEFLEENSF--SVPILVLKKDGLGMTLPSP-SFTVRDVEHYVGSDKEIDVIDVTRQADCKMKLG   89 (371)
T ss_dssp             BCCTTTSBCCCTTTCCHHHHHHHTT--CSCEEESSCTTSCCBCCCT-TCCHHHHHHHHCC-CEEEEEETTTTEEEEEEHH
T ss_pred             CCHHHhcccCChhhCcHHHHHhcCC--CCCEEEecCcccCCcCCCC-CCCHHHHHHHcCCCceEeeeecCcCCCccccHH
Confidence            4456789999999999988877644  6999999754   689987 899999999999 88999998766555 99999


Q ss_pred             HHHHHhhcCCCC-CCCCcc-cc--ccccccCCCCCCCch-hhhc-cc---CCCCCCC-ccceEecCCCCccccccCCCCC
Q psy11730        124 YRNQKFKCGEDN-HGYSHP-RR--KKLLDDYEVPIYFQD-DLFQ-YA---GEDKRPP-YRWFVMGPARSGTGIHIDPLGT  193 (496)
Q Consensus       124 ~f~~~~~~~~~~-p~y~~~-~~--~~L~~d~~~P~~f~~-d~~~-~~---~~~~~p~-~~w~~iG~~gs~T~lH~D~~~~  193 (496)
                      +|++|+++..++ |+|+++ ++  ..|.++|.+|++|.+ |+++ +.   +...+|+ ++|+|||++||+|++|+|++++
T Consensus        90 ~y~dY~~~~~re~~lnv~d~efs~~~L~~~~~~P~~~~d~d~~~~~wp~~~~~~rP~~~r~l~mGp~gS~T~~HiD~~gt  169 (371)
T 3k3o_A           90 DFVKYYYSGKREKVLNVISLEFSDTRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGT  169 (371)
T ss_dssp             HHHHHHTCTTCCSCEEEEEEECTTSGGGGTCBCCHHHHHHCHHHHHSCSSCSSCCCCCSCEEEEECTTEEEEEECCGGGC
T ss_pred             HHHHHHhccCCCCceeeechhccchhhhccccCCchhhhhhhhhhcCChhhhccCCCceeEEEEcCCCCCCCeEECCCCC
Confidence            999999998777 888754 22  258999999999986 5443 22   2346787 5999999999999999999999


Q ss_pred             CCcccccCCC
Q psy11730        194 NPDDGDVKDD  203 (496)
Q Consensus       194 ~~~~~~~~~~  203 (496)
                      ++|++++.|+
T Consensus       170 s~w~~vv~Gr  179 (371)
T 3k3o_A          170 SVWYHVLKGE  179 (371)
T ss_dssp             EEEEEEEEEE
T ss_pred             ceeEEEeeeE
Confidence            9977777755

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=99.97  E-value=2.2e-31  Score=268.07  Aligned_cols=173  Identities=13%  Similarity=0.094  Sum_probs=131.9

Q ss_pred             cCCCCCCCcccccccCccccccccccCCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCC---CCCcCCCCCCHHHHHh
Q psy11730         25 RARPELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVT---ENWNATYKWTLEKLGK  101 (496)
Q Consensus        25 ~~r~~~~~~~~w~~~~~~~~~~~~~~~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~---~~WpA~~~Wt~~~L~~  101 (496)
                      ..+|-..++..|.+.-..++|   ++..+-|.|++.++++.+-|.++.  -++||||++..   ..||+ .+||.+++++
T Consensus        19 ~~~~~~~gs~~fi~~~~~~~~---~~~~~~v~~~~g~~f~~~yl~~~g--~~~Pvli~~~~glgm~~P~-~~~tv~~v~~   92 (392)
T 3pua_A           19 DVKPVQNGSQLFIKELRSRTF---PSAEDVVARVPGSQLTLGYMEEHG--FTEPILVPKKDGLGLAVPA-PTFYVSDVEN   92 (392)
T ss_dssp             --CCCCTTSHHHHHHHHHCCC---CBGGGTSEECCGGGCCHHHHHHHT--TCSCEEESSCTTTTCBCCC-TTCCHHHHHH
T ss_pred             CCCcccCCCHHHHHHHHhCCC---CChHHeEecCChhhchHHHHHhcC--CCccEEEeCCccccCcCCC-CCCCHHHHHH
Confidence            345555666777776655554   334468899988899977665544  37999999754   68998 6899999999


Q ss_pred             hcC-CeeEEeeecCCCcc-ccCHHHHHHHhhcCCCC-CCCCccc-c--ccccccCCCCCCCch-hhhc-cc---CCCCCC
Q psy11730        102 KYR-NQKFKCGEDNHGYS-KLGKKYRNQKFKCGEDN-HGYSHPR-R--KKLLDDYEVPIYFQD-DLFQ-YA---GEDKRP  170 (496)
Q Consensus       102 ~~g-~~~v~v~~~~~~~~-~m~~~~f~~~~~~~~~~-p~y~~~~-~--~~L~~d~~~P~~f~~-d~~~-~~---~~~~~p  170 (496)
                      .+| |..|+|.++..... +|+|++|++|+++..++ |+|+++. +  ..|.+.|..|+++.+ |+.. +.   ....+|
T Consensus        93 ~vG~d~~V~ViDv~~Q~~~~M~l~~yv~Y~~~~~re~~lnv~dlefs~t~L~~~~~~P~lv~d~d~v~~~wp~~~~~~rP  172 (392)
T 3pua_A           93 YVGPERSVDVTDVTKQKDCKMKLKEFVDYYYSTNRKRVLNVTNLEFSDTRMSSFVEPPDIVKKLSWVENYWPDDALLAKP  172 (392)
T ss_dssp             HHCTTCEEEEEETTTTEEEEEEHHHHHHHHTCSSCCSCEEEEEEECTTSGGGGGCBCCHHHHHHCHHHHHSCTTCSSCCC
T ss_pred             HcCCCcEEeeeecCcCcCccccHHHHHHHHhccCCCcceEeeecccccchhhccccCchhhhhhhhhhhccchhhhhcCC
Confidence            999 89999998776655 99999999999998777 8887651 1  247888888887765 4322 21   224577


Q ss_pred             C-ccceEecCCCCccccccCCCCCCCcccccCCC
Q psy11730        171 P-YRWFVMGPARSGTGIHIDPLGTNPDDGDVKDD  203 (496)
Q Consensus       171 ~-~~w~~iG~~gs~T~lH~D~~~~~~~~~~~~~~  203 (496)
                      + ++|++||++||+|++|+|+.++++|++++.|+
T Consensus       173 ~v~r~~~mGp~gS~T~fHiD~~gTs~w~~vi~Gr  206 (392)
T 3pua_A          173 KVTKYCLICVKDSYTDFHIDSGGASAWYHVLKGE  206 (392)
T ss_dssp             SCSCEEEEECTTCEEEEECCGGGCEEEEEEEEEE
T ss_pred             CceeEEEEeCCCCCCCEeECCCCCceeeeeccce
Confidence            7 99999999999999999999999977776654

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=99.97  E-value=1.1e-30  Score=263.86  Aligned_cols=170  Identities=14%  Similarity=0.105  Sum_probs=130.7

Q ss_pred             CCCCCcccccccCccccccccccCCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCC---CCCcCCCCCCHHHHHhhcC
Q psy11730         28 PELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVT---ENWNATYKWTLEKLGKKYR  104 (496)
Q Consensus        28 ~~~~~~~~w~~~~~~~~~~~~~~~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~---~~WpA~~~Wt~~~L~~~~g  104 (496)
                      |...++..|.+..-+.+|   +...+.|.|++.+++|.+-|.++.  -++||||++..   ..||+ .+||.+++++.+|
T Consensus        23 ~~~~g~~~f~~~~~~~~~---~~~~~~v~~i~g~d~t~~y~~~~~--~~~Pvli~~~~glg~~~P~-~~~tv~~v~~~vG   96 (397)
T 3kv9_A           23 PVQAGTRTFIKELRSRVF---PSADEIIIKMHGSQLTQRYLEKHG--FDVPIMVPKLDDLGLRLPS-PTFSVMDVERYVG   96 (397)
T ss_dssp             CCCTTSHHHHHHHHHCCC---CBGGGTCEECCTTTCCHHHHHHHC--SCSCEEESSCTTSCCBCCC-TTCCHHHHHHHHT
T ss_pred             ccccCchHHHHHHhcCCC---CChhHeeecCCHHHhhHHHHHhcC--CCCcEEEecCccccCcCCC-CCCCHHHHHHHhC
Confidence            555555666654333333   334568999999999988665543  37999999864   58999 7999999999999


Q ss_pred             -CeeEEeeecCCCcc-ccCHHHHHHHhhcCCCC-CCCCccc---cccccccCCCCCCCch-hhhc-ccCC---CCCCC-c
Q psy11730        105 -NQKFKCGEDNHGYS-KLGKKYRNQKFKCGEDN-HGYSHPR---RKKLLDDYEVPIYFQD-DLFQ-YAGE---DKRPP-Y  172 (496)
Q Consensus       105 -~~~v~v~~~~~~~~-~m~~~~f~~~~~~~~~~-p~y~~~~---~~~L~~d~~~P~~f~~-d~~~-~~~~---~~~p~-~  172 (496)
                       +..|+|.++..... +|+|++|++|+++..++ |+|+++.   ...|.++|.+|++|.+ |++. +..+   ..+|. .
T Consensus        97 ~d~~V~ViDv~~Q~~~~M~l~~yv~Y~~~~~r~~~lnvislefs~~~L~~~~~~P~~v~d~Dwv~~~wp~~~~~~rP~v~  176 (397)
T 3kv9_A           97 GDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQ  176 (397)
T ss_dssp             TTSEEEEEETTTTEEEEEEHHHHHHHHHCSSCSSCEEEEEEECTTSGGGGGCBCCHHHHHHCHHHHHCCTTCSSCCCCCS
T ss_pred             CCceEeeeecCcccCccccHHHHHHHHhccCCCccceecchhhccchhccCcCCCceeeccchhhhcCCchhccCCccce
Confidence             89999998876655 99999999999988776 8775431   1358999999999985 6543 2222   23553 6


Q ss_pred             cceEecCCCCccccccCCCCCCCcccccCCC
Q psy11730        173 RWFVMGPARSGTGIHIDPLGTNPDDGDVKDD  203 (496)
Q Consensus       173 ~w~~iG~~gs~T~lH~D~~~~~~~~~~~~~~  203 (496)
                      +|+|||++||+|++|+|+.++++|++++.|+
T Consensus       177 r~l~mGp~gS~T~~HiD~~gts~w~~vv~Gr  207 (397)
T 3kv9_A          177 KYCLMGVQDSYTDFHIDFGGTSVWYHVLWGE  207 (397)
T ss_dssp             CEEEEECTTCEEEEECCGGGCEEEEEEEEEE
T ss_pred             eEEEEcCCCCCCCEEECCCCCceeeeecCce
Confidence            9999999999999999999999977777755

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=99.96  E-value=7.7e-31  Score=265.21  Aligned_cols=139  Identities=19%  Similarity=0.226  Sum_probs=109.7

Q ss_pred             CCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCCCCCcCCCCCCHHHHHhhcCCeeEEeeecCC----------Ccccc
Q psy11730         51 VKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNH----------GYSKL  120 (496)
Q Consensus        51 ~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~~L~~~~g~~~v~v~~~~~----------~~~~m  120 (496)
                      ...+|+|++  .+|+++|.++|..+++||||+| +.+|||.++||++||++++|+..|+|.....          .+..|
T Consensus        27 ~~~~I~r~~--~lS~~eF~~~y~~~~kPvVi~g-~~~wpa~~~Ws~dyL~~~~g~~~V~v~~~~~~~~~~~~~~~~~~~~  103 (338)
T 3al5_A           27 QHLPVPRLE--GVSREQFMQHLYPQRKPLVLEG-IDLGPCTSKWTVDYLSQVGGKKEVKIHVAAVAQMDFISKNFVYRTL  103 (338)
T ss_dssp             CCCBCCEEE--SCCHHHHHHHTGGGCCCEEEES-CCCCTHHHHCCHHHHHHHHCSCEEEEEC----CCCC-CCCCCEEEE
T ss_pred             CCCCCCEEC--CCCHHHHHHHhhcCCCeEEEeC-CCCCcccccCCHHHHHHhhCCceEEEEEcCCCCcccccccceeEEe
Confidence            556899985  5999999999999999999999 7999999999999999999999999975332          12389


Q ss_pred             CHHHHHHHhhcCCCC--------CCCCc--------------cccccccccCCCCCCCchhhhcccCCCCCCCccceEec
Q psy11730        121 GKKYRNQKFKCGEDN--------HGYSH--------------PRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMG  178 (496)
Q Consensus       121 ~~~~f~~~~~~~~~~--------p~y~~--------------~~~~~L~~d~~~P~~f~~d~~~~~~~~~~p~~~w~~iG  178 (496)
                      +|++|++++....+.        ++|+.              .++|.|.+||.+|.+|..|.+.         ..|+|||
T Consensus       104 ~f~efl~~~~~~~~~~~l~~~~~~~Yl~~~~~~~~~~~~~l~~~~p~L~~d~~~P~~~~~d~~~---------~s~l~~g  174 (338)
T 3al5_A          104 PFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFPLLKGDIKFPEFFKEEQFF---------SSVFRIS  174 (338)
T ss_dssp             EHHHHHHHHHC-CCSSCSSCTTCCCEEECCCSSTTTCCCCHHHHCHHHHTTCCCCCCSCGGGEE---------EEEEEEE
T ss_pred             EHHHHHHHHHhccccccccCCCcccchhhcccccccchhhHhHHCHHHHHhcCCCccccccccc---------cceeEEC
Confidence            999999998765432        34442              2468899999999998776431         2378899


Q ss_pred             CCCCccccccCCCCCCCcccccCCC
Q psy11730        179 PARSGTGIHIDPLGTNPDDGDVKDD  203 (496)
Q Consensus       179 ~~gs~T~lH~D~~~~~~~~~~~~~~  203 (496)
                      ++|++|++|+|++.|..  +|+.|+
T Consensus       175 ~~g~~~~~H~D~~~n~~--~qv~G~  197 (338)
T 3al5_A          175 SPGLQLWTHYDVMDNLL--IQVTGK  197 (338)
T ss_dssp             CTTCEEEEECCSSEEEE--EECSSC
T ss_pred             CCCCCccceECCcccEE--EEEEEE
Confidence            99999999999987655  444433

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=99.96  E-value=6.8e-30  Score=263.12  Aligned_cols=170  Identities=14%  Similarity=0.097  Sum_probs=127.4

Q ss_pred             CCCCCcccccccCccccccccccCCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCC---CCCcCCCCCCHHHHHhhcC
Q psy11730         28 PELNGKDAWFELGYADKFDKFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVT---ENWNATYKWTLEKLGKKYR  104 (496)
Q Consensus        28 ~~~~~~~~w~~~~~~~~~~~~~~~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~---~~WpA~~~Wt~~~L~~~~g  104 (496)
                      |-..++..|.+..-+.+|   ++..+-|.+++.++++.+-|.++..  ++||||++..   ..||+. +||.+++++.+|
T Consensus        79 p~~~Gs~~fI~~l~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~--~~Pvli~~~~glgm~~P~~-~~tv~~v~~~~G  152 (447)
T 3kv4_A           79 PVKTGSPTFVRELRSRTF---DSSDEVILKPTGNQLTVEFLEENSF--SVPILVLKKDGLGMTLPSP-SFTVRDVEHYVG  152 (447)
T ss_dssp             CCCTTSHHHHHHHHTCCC---EEGGGTCBCCCTTTCCHHHHHHTTS--CSCEEESSCTTSCCBCCCT-TCCHHHHHHHHC
T ss_pred             ccccccHHHHHHHhcCcC---CChhHeeeccchhhchHHHHHhcCC--CCCEEEecCcccCCcCCCc-cCCHHHHHHHcC
Confidence            333445555554323332   3333456677778888666655433  7999999544   689986 899999999999


Q ss_pred             -CeeEEeeecCCCcc-ccCHHHHHHHhhcCCCC-CCCCcc-cc--ccccccCCCCCCCch-hhhccc----CCCCCCC-c
Q psy11730        105 -NQKFKCGEDNHGYS-KLGKKYRNQKFKCGEDN-HGYSHP-RR--KKLLDDYEVPIYFQD-DLFQYA----GEDKRPP-Y  172 (496)
Q Consensus       105 -~~~v~v~~~~~~~~-~m~~~~f~~~~~~~~~~-p~y~~~-~~--~~L~~d~~~P~~f~~-d~~~~~----~~~~~p~-~  172 (496)
                       +..|+|.++..... +|+|++|++|+++..++ |+|+++ ++  ..|.++|.+|++|.+ |+++.+    ....+|+ +
T Consensus       153 ~d~~V~ViDv~~Q~~~~M~l~~y~dy~~~~~r~~~lnv~d~efs~~~L~~~~~~P~~~~~~D~~~~lw~~~~~~~rP~v~  232 (447)
T 3kv4_A          153 SDKEIDVIDVTRQADCKMKLGDFVKYYYSGKREKVLNVISLEFSDTRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQ  232 (447)
T ss_dssp             TTCEEEEEETTTTEEEEEEHHHHHHHHHSSCCSSCEEEEEEECTTSGGGGGCBCCHHHHHHCHHHHHCCSCTTSCCCCCS
T ss_pred             CCceEcceecCcCccccccHHHHHHHHhccCCCCceeecccccccchhhhccCCCceecccchhhhcccchhhccCCCce
Confidence             88999998766555 99999999999988776 888754 11  269999999999986 555422    2345776 9


Q ss_pred             cceEecCCCCccccccCCCCCCCcccccCCC
Q psy11730        173 RWFVMGPARSGTGIHIDPLGTNPDDGDVKDD  203 (496)
Q Consensus       173 ~w~~iG~~gs~T~lH~D~~~~~~~~~~~~~~  203 (496)
                      +|+|||++||+|++|+|++++++|++++.|+
T Consensus       233 r~~~mG~~gS~T~~HiD~~~ts~w~~vi~Gr  263 (447)
T 3kv4_A          233 KYCLMSVRDSYTDFHIDFGGTSVWYHVLKGE  263 (447)
T ss_dssp             CEEEEECTTEEEEEECCGGGCEEEEEEEESE
T ss_pred             eEEEEeCCCCCCCeeECCCCCceeEEEeeeE
Confidence            9999999999999999999999977777755

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=99.96  E-value=2.6e-29  Score=262.76  Aligned_cols=149  Identities=13%  Similarity=0.074  Sum_probs=118.3

Q ss_pred             CCceeeecCCCCCHHHHHHHhcCCCCcEEEecCC---CCCcCCCCCCHHHHHhhcC-CeeEEeeecCCCcc-ccCHHHHH
Q psy11730         52 KENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVT---ENWNATYKWTLEKLGKKYR-NQKFKCGEDNHGYS-KLGKKYRN  126 (496)
Q Consensus        52 ~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~---~~WpA~~~Wt~~~L~~~~g-~~~v~v~~~~~~~~-~m~~~~f~  126 (496)
                      .+-|.|++.++++.+.|.++.  -++||||++..   ..||+ .+||.+|+++.+| |..|+|.++..... +|+|++|+
T Consensus       135 ~~~v~~~~~~~~~~~~~~~~~--~~~Pvli~~~~~lg~~~P~-~~~t~~~v~~~~G~d~~V~V~Dv~~Q~~~~m~l~~yi  211 (488)
T 3kv5_D          135 DEIIIKMHGSQLTQRYLEKHG--FDVPIMVPKLDDLGLRLPS-PTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYV  211 (488)
T ss_dssp             GGTCEECCGGGCCHHHHHHHC--SCSCEEECSCTTTCCBCCC-TTCCHHHHHHHHCTTCEEEEEETTTTEEEEEEHHHHH
T ss_pred             hheeeccccccchHHHHHhcC--CCCCEEEecCCCcCCcCCC-CCCcHHHHHHHhCCCceeeeeecCccccccccHHHHH
Confidence            456899888899988776543  37999999764   58999 7899999999999 89999998776655 99999999


Q ss_pred             HHhhcCCCC-CCCCccc---cccccccCCCCCCCch-hhhcc-cCC---CCCCC-ccceEecCCCCccccccCCCCCCCc
Q psy11730        127 QKFKCGEDN-HGYSHPR---RKKLLDDYEVPIYFQD-DLFQY-AGE---DKRPP-YRWFVMGPARSGTGIHIDPLGTNPD  196 (496)
Q Consensus       127 ~~~~~~~~~-p~y~~~~---~~~L~~d~~~P~~f~~-d~~~~-~~~---~~~p~-~~w~~iG~~gs~T~lH~D~~~~~~~  196 (496)
                      +|+++..++ ++|+.+.   ...|.++|.+|.+|.+ |+++. ..+   ..+|. .+|+|||++||+|++|+|++++++|
T Consensus       212 ~y~~~~~r~~~~nv~slefs~~~L~~~~~~P~~~~~~d~~~~~wp~~~~~~rP~~~r~~~mG~~gS~T~~H~D~~~t~~w  291 (488)
T 3kv5_D          212 KYFMNPNRPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVW  291 (488)
T ss_dssp             HHHHSSSCSSCEEEEEEECTTSGGGGGCBCCHHHHHHCHHHHHCCTTCSSCCCCCSCEEEEECTTCEEEEECCGGGCEEE
T ss_pred             HHHhccCCcccccccccccccchhhccCCCChhhhhhchhhhcCcccccccCcccceEEEEcCCCCCCCeEECCCCCcee
Confidence            999987666 7665431   2368999999999865 55432 221   23555 5999999999999999999999997


Q ss_pred             ccccCCC
Q psy11730        197 DGDVKDD  203 (496)
Q Consensus       197 ~~~~~~~  203 (496)
                      .+++.|+
T Consensus       292 ~~vv~G~  298 (488)
T 3kv5_D          292 YHVLWGE  298 (488)
T ss_dssp             EEEEEEE
T ss_pred             eeccCee
Confidence            7777755

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=99.94  E-value=1e-27  Score=243.20  Aligned_cols=143  Identities=16%  Similarity=0.193  Sum_probs=99.1

Q ss_pred             CCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCCCCCcCCCCCCHHHHHhhcCCeeEEeeecCCC--------------
Q psy11730         51 VKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHG--------------  116 (496)
Q Consensus        51 ~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~~L~~~~g~~~v~v~~~~~~--------------  116 (496)
                      ...+|+|+  +.+|++ | ++|+.+++||||+|++.+||| ++||.+||+++||+..|+|.....+              
T Consensus        38 ~~~~I~Rv--~~~s~~-~-~~y~~~~~PVVi~g~~~~wpA-~kWt~eyL~~~~G~~~V~V~~~~~~~~~y~d~~~~~~~~  112 (349)
T 3d8c_A           38 PTRPIPRL--SQSDPR-A-EELIENEEPVVLTDTNLVYPA-LKWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQ  112 (349)
T ss_dssp             CEEECCEE--CTTCHH-H-HHHHHTTCCEEESCCCTTGGG-GGCCHHHHHHHSCSSCEEEEEESSSBCCCCCGGGTTSCT
T ss_pred             CCCCceEe--cCCChh-H-HHHhcCCccEEEeCCCCCccc-ccCCHHHHHHhhCCCeEEEEECCCCcccccccccccccc
Confidence            34689998  457777 5 789999999999999999999 8999999999999999999754322              


Q ss_pred             -c------cccCHHHHHHHhhcCC---CC-CCCCccc-----cccccccCCCCCCCchhhhc-ccCCC-CCCCc-cceEe
Q psy11730        117 -Y------SKLGKKYRNQKFKCGE---DN-HGYSHPR-----RKKLLDDYEVPIYFQDDLFQ-YAGED-KRPPY-RWFVM  177 (496)
Q Consensus       117 -~------~~m~~~~f~~~~~~~~---~~-p~y~~~~-----~~~L~~d~~~P~~f~~d~~~-~~~~~-~~p~~-~w~~i  177 (496)
                       +      ..|+|++|++++.+..   ++ ++|+.+.     .+.|.+||..+   ..++.. ..... ..+.+ .++||
T Consensus       113 ~F~~~~~~~~m~~~efl~~~~~~~~~~~~~~~YL~~~~~~~~~~~l~~D~~~~---~~~~~~~~~~~~~~~~~~~~~l~i  189 (349)
T 3d8c_A          113 NFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGF---NWNWINKQQGKRGWGQLTSNLLLI  189 (349)
T ss_dssp             TCCCSEEEEEECHHHHHHHHHHHHHHTCCCEEEEEEECCTTSCHHHHHHHHTS---CHHHHHHHHHHTTCCCEEECEEEE
T ss_pred             cccccceeEeeEHHHHHHHHHhhcccCCCCCeeeecccccccchhhhhhhhcc---chhhhhhhhhccccCccccceEEE
Confidence             1      2899999999988742   23 6777542     23455555321   112111 00000 11222 46899


Q ss_pred             cCCCCccccccCCCCCCCcccccCCC
Q psy11730        178 GPARSGTGIHIDPLGTNPDDGDVKDD  203 (496)
Q Consensus       178 G~~gs~T~lH~D~~~~~~~~~~~~~~  203 (496)
                      |++||+|++|+|++.+..  +|+.|+
T Consensus       190 G~~gs~t~~H~D~~~n~~--~qv~G~  213 (349)
T 3d8c_A          190 GMEGNVTPAHYGEQQNFF--AQIKGY  213 (349)
T ss_dssp             ECTTCEEEEECCSEEEEE--EEEESC
T ss_pred             ECCCCCccceECChhcEE--EEEece
Confidence            999999999999985444  444443

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=99.80  E-value=2.3e-20  Score=192.73  Aligned_cols=137  Identities=18%  Similarity=0.191  Sum_probs=100.0

Q ss_pred             CHHHHHHHhcCCC------CcEEEe---cCCCCCcCCCCCCHHHHHhhcC-CeeEEeeecCCCcc-ccCHHHHHHHhhcC
Q psy11730         64 SPQEFIEKYEKPN------KPVVIK---GVTENWNATYKWTLEKLGKKYR-NQKFKCGEDNHGYS-KLGKKYRNQKFKCG  132 (496)
Q Consensus        64 s~eeF~~~y~~~~------~PvVi~---g~~~~WpA~~~Wt~~~L~~~~g-~~~v~v~~~~~~~~-~m~~~~f~~~~~~~  132 (496)
                      +-.+|..+|...+      +|++|+   |+...-|. ...|.+.+.+..| +..|.|-++..... .|+|++|++|+.+.
T Consensus       152 dG~~f~~~~~~~~g~~~f~~p~lv~~~dgLgm~~P~-~~ftv~dV~~~vG~d~~VdVIDV~tQ~~~~mtl~~~~~yf~~~  230 (528)
T 3pur_A          152 DGYEFRREFEKLGGADNWGKVFMVKDMDGLNMTMPK-PGFDLEDVVKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDT  230 (528)
T ss_dssp             EHHHHHHHHHHTTCGGGCCSEEEEEECTTSCCCCCC-TTCCHHHHHHHHCTTCEEEEEETTTTEEEEEEHHHHHHHHHCC
T ss_pred             CchhhHHHHHhhcCcccCCeeEEEeccccCCCCCCC-CCCCHHHHHHhhCCCceEeeEECCCCCCCcCcHHHHHHHhcCc
Confidence            5677777776543      699999   44344553 2588999999987 77899988776655 99999999999874


Q ss_pred             C-CC-CCCC----ccccccccccCCCCCCCch-hhhccc-C------------------CCCCCCc-cceEecCCCCccc
Q psy11730        133 E-DN-HGYS----HPRRKKLLDDYEVPIYFQD-DLFQYA-G------------------EDKRPPY-RWFVMGPARSGTG  185 (496)
Q Consensus       133 ~-~~-p~y~----~~~~~~L~~d~~~P~~f~~-d~~~~~-~------------------~~~~p~~-~w~~iG~~gs~T~  185 (496)
                      . .+ .+++    +...+.|.+.+..|.++++ |+...+ +                  +..+|++ +|++||++||+|.
T Consensus       231 ~~R~~i~NviSLEfS~~~~L~~~v~~P~~Vr~ld~v~~~Wp~~~~~~~~~~~~~~~~~~~~~rP~v~rf~lmg~~gS~Td  310 (528)
T 3pur_A          231 KNRPLLYNFLSLEFSDNNEMKEIAKPPRFVQEISMVNRLWPDVSGAEYIKLLQREEYLPEDQRPKVEQFCLAGMAGSYTD  310 (528)
T ss_dssp             SCCSSCEEECCEECTTSTTHHHHSCCCHHHHHHCHHHHHSCCC-------------CCCGGGSCCCSSEEEEECTTEEEE
T ss_pred             cccceeeEEeeEEecCchhhhccccCCcEEecccHHHHhcCcccchhhhhhhhcccccccccCCCeeEEEEEeCCCCCCC
Confidence            2 22 4443    2344678888999999876 543221 1                  1257776 9999999999999


Q ss_pred             cccCCCCCCCcccccC
Q psy11730        186 IHIDPLGTNPDDGDVK  201 (496)
Q Consensus       186 lH~D~~~~~~~~~~~~  201 (496)
                      +|+|+.++++|...+.
T Consensus       311 ~HiD~~gts~w~~v~~  326 (528)
T 3pur_A          311 FHVDFGGSSVYYHILK  326 (528)
T ss_dssp             EECCGGGCEEEEEEEE
T ss_pred             eeECCCCCceeEEEec
Confidence            9999999998444444

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=99.53  E-value=6.4e-15  Score=148.55  Aligned_cols=121  Identities=14%  Similarity=0.128  Sum_probs=69.3

Q ss_pred             CCCCHHHHHHHhcCCCCcEEEecCCCCC-cCCCCCCHHHHHhhcCC-----eeEEee-ec--CCCc----c-ccCHHHHH
Q psy11730         61 KDYSPQEFIEKYEKPNKPVVIKGVTENW-NATYKWTLEKLGKKYRN-----QKFKCG-ED--NHGY----S-KLGKKYRN  126 (496)
Q Consensus        61 ~~ls~eeF~~~y~~~~~PvVi~g~~~~W-pA~~~Wt~~~L~~~~g~-----~~v~v~-~~--~~~~----~-~m~~~~f~  126 (496)
                      ..+|+++|.++|. .++||||+|+ .+| ++  .|+.++|.+.+++     ..|++. ..  ...+    . .+++.+|.
T Consensus        26 ~~is~e~F~~~yw-~kkPlvir~~-~~~~~~--l~s~~~L~~l~~~~~v~~~~vrl~~~~~~~~~~~~~~g~~~~~~~~~  101 (342)
T 1vrb_A           26 SPVTMSEFLEEYW-PVKPLVARGE-VERFTS--IPGFEKVRTLENVLAIYNNPVMVVGDAVIEESEGITDRFLVSPAEAL  101 (342)
T ss_dssp             TTSCHHHHHHHTT-TTSCEEECCC-GGGGGG--STTCGGGSSHHHHHHHCCSCEEEC-------------CEEECHHHHH
T ss_pred             cCCCHHHHHHHHh-ccCCEEEcCC-cccccC--CCCHHHHHHHHhhcCcCcCceEEeCCCcCccccccCCCcccCHHHHH
Confidence            6799999999999 5899999999 775 44  6777776665443     234432 11  1112    1 46778887


Q ss_pred             HHhhcCCCCC-CCCccccc---cccccCCC-CCCCchhhhcccCCCCCCCccceEecCCCCccccccCCCCCCC
Q psy11730        127 QKFKCGEDNH-GYSHPRRK---KLLDDYEV-PIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIHIDPLGTNP  195 (496)
Q Consensus       127 ~~~~~~~~~p-~y~~~~~~---~L~~d~~~-P~~f~~d~~~~~~~~~~p~~~w~~iG~~gs~T~lH~D~~~~~~  195 (496)
                      +.......-- .......|   +|.+++.. |.+.       ++  .+ ....+|+||+|++|++|+|++.+..
T Consensus       102 ~l~~~g~tl~v~~~~~~~p~l~~l~~~~~~~~~~~-------~~--~n-~~~~~~~gp~g~~~~~H~D~~dnfl  165 (342)
T 1vrb_A          102 EWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLP-------AG--TS-SKAIVYAAKNGGGFKAHFDAYTNLI  165 (342)
T ss_dssp             HHHHTTCCEEECCGGGTCTHHHHHHHHHHHHTTCC-------TT--CC-EEEEEEEECSSCCCCSEECSSEEEE
T ss_pred             HHHhCCCeEEECChhHhChHHHHHHHhhhhhcCCc-------cc--cc-ccceEEEeCCCCCCCCeECChhcEE
Confidence            7655321100 11111122   33333321 2110       00  00 0123778999999999999998777

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.49  E-value=5.9e-15  Score=150.26  Aligned_cols=165  Identities=17%  Similarity=0.220  Sum_probs=111.3

Q ss_pred             cchhcccCCccccceeecccccCCCccccCceeeecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEE
Q psy11730        238 NIKLLRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVS  316 (496)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~  316 (496)
                      .....++.||+.|....+|++|+.+.+++..|+         +.|..+. .++|+.|||||||+|.+++.+|+.|+++|+
T Consensus        40 ~~~~~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~---------~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~  110 (376)
T 4hc4_A           40 TKRERDQLYYECYSDVSVHEEMIADRVRTDAYR---------LGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVY  110 (376)
T ss_dssp             ---------CCCHHHHHHHHHHHHCHHHHHHHH---------HHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEE
T ss_pred             ccccchhhhhhhccCcHHHHHHhCCHHHHHHHH---------HHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEE
Confidence            445667799999999999999999998877665         3333322 247899999999999999999999999999


Q ss_pred             EEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccc---cchHhHhhee--------ee
Q psy11730        317 FQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSV---ANYNKLLTVW--------CL  385 (496)
Q Consensus       317 giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~---~~~~~~~~~~--------~l  385 (496)
                      |||.|+ |++.|++....+  +...+|++++++++++..  .++||+|+|..+-+.+   ..++.++..+        .+
T Consensus       111 ave~s~-~~~~a~~~~~~n--~~~~~i~~i~~~~~~~~l--pe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~  185 (376)
T 4hc4_A          111 AVEASA-IWQQAREVVRFN--GLEDRVHVLPGPVETVEL--PEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLL  185 (376)
T ss_dssp             EEECST-THHHHHHHHHHT--TCTTTEEEEESCTTTCCC--SSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEE
T ss_pred             EEeChH-HHHHHHHHHHHc--CCCceEEEEeeeeeeecC--CccccEEEeecccccccccchhhhHHHHHHhhCCCCceE
Confidence            999996 777776544332  345789999999999876  5789999996554433   4555555431        45


Q ss_pred             cCCCCCcccEEEeeccCCcccccccchhhHh---cCCC
Q psy11730        386 FPTHTPKDLLKVTSAEGGKQRDEAITWFSII---YPRT  420 (496)
Q Consensus       386 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  420 (496)
                      +|...   .+++..... ......+.+|.++   |+..
T Consensus       186 iP~~a---tly~apie~-~~l~~~i~~w~~v~~~yGfd  219 (376)
T 4hc4_A          186 LPASA---ELFIVPISD-QMLEWRLGFWSQVKQHYGVD  219 (376)
T ss_dssp             ESCEE---EEEEEEECC-HHHHHHHHGGGGHHHHHSCC
T ss_pred             CCccc---eEEEEEecc-chhhhhhcchhccccccCcC
Confidence            55543   456655543 2222345556554   6654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.40  E-value=5.5e-13  Score=129.36  Aligned_cols=101  Identities=13%  Similarity=0.167  Sum_probs=82.8

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .++++|.+..+ .+.+|||||||+|.++..|+..+ .+|+|+|+|+.|++.|++         ..++.+.++++++++..
T Consensus        28 ~l~~~l~~~~~-~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~~~~~   96 (257)
T 4hg2_A           28 ALFRWLGEVAP-ARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALR---------HPRVTYAVAPAEDTGLP   96 (257)
T ss_dssp             HHHHHHHHHSS-CSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCC---------CTTEEEEECCTTCCCCC
T ss_pred             HHHHHHHHhcC-CCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhh---------cCCceeehhhhhhhccc
Confidence            46677766543 45699999999999999998876 589999999999998764         35799999999998765


Q ss_pred             CCCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730        357 IHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                       +++||+|++..++|++ +++.++++  .+|.|+|.
T Consensus        97 -~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~  130 (257)
T 4hg2_A           97 -PASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAV  130 (257)
T ss_dssp             -SSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEE
T ss_pred             -CCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCE
Confidence             7899999999999887 46677766  37788763

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.34  E-value=1.4e-12  Score=126.71  Aligned_cols=112  Identities=15%  Similarity=0.163  Sum_probs=86.0

Q ss_pred             chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC---CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA---AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      ....++..|......++.+|||||||+|.+++.+++...   .+|+|||+|+.|++.|+++....  +...+++|+++|+
T Consensus        55 ~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~--~~~~~v~~~~~D~  132 (261)
T 4gek_A           55 NIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY--KAPTPVDVIEGDI  132 (261)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS--CCSSCEEEEESCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh--ccCceEEEeeccc
Confidence            344455555554445788999999999999999998643   48999999999999998775332  2456899999999


Q ss_pred             CCccccCCCceeEEEEccccccccch--HhHhhee--eecCCCC
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVANY--NKLLTVW--CLFPTHT  390 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~~--~l~p~~~  390 (496)
                      .+++.   +.||+|+++.+++|+++.  ..+++++  .|.|+|.
T Consensus       133 ~~~~~---~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~  173 (261)
T 4gek_A          133 RDIAI---ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGA  173 (261)
T ss_dssp             TTCCC---CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccccc---cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcE
Confidence            98764   569999999999999654  3566653  6777763

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.32  E-value=2.2e-12  Score=118.73  Aligned_cols=109  Identities=24%  Similarity=0.315  Sum_probs=85.2

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-  356 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-  356 (496)
                      +.+.+......++.+|||+|||+|.+++.++..+..+|+|+|+|+.|++.++++....+   ..+++++++|+.++... 
T Consensus        33 l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~  109 (189)
T 3p9n_A           33 LFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALG---LSGATLRRGAVAAVVAAG  109 (189)
T ss_dssp             HHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHT---CSCEEEEESCHHHHHHHC
T ss_pred             HHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC---CCceEEEEccHHHHHhhc
Confidence            44555444446789999999999999998888888899999999999999987754433   36899999999887542 


Q ss_pred             CCCceeEEEEccccccc-cchHhHhhee----eecCCC
Q psy11730        357 IHSKFDIILTSETIYSV-ANYNKLLTVW----CLFPTH  389 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~-~~~~~~~~~~----~l~p~~  389 (496)
                      ..++||+|++++++++. ++.+.+++..    .|.|++
T Consensus       110 ~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG  147 (189)
T 3p9n_A          110 TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGT  147 (189)
T ss_dssp             CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTC
T ss_pred             cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCe
Confidence            25789999999998875 6677776652    456655

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.30  E-value=4.7e-12  Score=121.84  Aligned_cols=109  Identities=14%  Similarity=0.125  Sum_probs=87.9

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      ..++.+.....+ ++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++....+  ...++++..+|+.+++.
T Consensus        23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~~  100 (256)
T 1nkv_A           23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAAGYVA  100 (256)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCCTTCCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECChHhCCc
Confidence            444555554443 578999999999999999998766789999999999999987653322  23589999999998765


Q ss_pred             cCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        356 VIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                        +++||+|++..+++|++++..+++++  .|.|+|
T Consensus       101 --~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG  134 (256)
T 1nkv_A          101 --NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGG  134 (256)
T ss_dssp             --SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEE
T ss_pred             --CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCe
Confidence              68999999999999999999888773  667765

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.29  E-value=2.2e-12  Score=120.54  Aligned_cols=112  Identities=13%  Similarity=0.076  Sum_probs=82.4

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccc---------cCCCCceEEEe
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN---------TDNLEKCKFYH  347 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~---------~~~~~~v~~~~  347 (496)
                      .+.+++......++.+|||+|||+|..+..|++.|. +|+|+|+|+.|++.|++++....         .....++++++
T Consensus        10 ~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~   88 (203)
T 1pjz_A           10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   88 (203)
T ss_dssp             HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence            355555543334678999999999999999999875 89999999999999987642100         00135899999


Q ss_pred             cccCCccccCCCceeEEEEccccccccc--hHhHhhe--eeecCCC
Q psy11730        348 GDWGSLSAVIHSKFDIILTSETIYSVAN--YNKLLTV--WCLFPTH  389 (496)
Q Consensus       348 ~d~~~~~~~~~~~fD~Ii~~~~l~~~~~--~~~~~~~--~~l~p~~  389 (496)
                      +|+.+++....++||+|++..++++++.  ...++++  ..|.|++
T Consensus        89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG  134 (203)
T 1pjz_A           89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQAC  134 (203)
T ss_dssp             ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEE
T ss_pred             CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCc
Confidence            9999987531268999999999998854  3345554  2566665

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.28  E-value=1.3e-11  Score=119.91  Aligned_cols=112  Identities=16%  Similarity=0.224  Sum_probs=87.7

Q ss_pred             hHHHHHHHHhCCC--CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC
Q psy11730        275 TFDLLNFIKDNVA--VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS  352 (496)
Q Consensus       275 ~~~l~~~l~~~~~--~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~  352 (496)
                      .......+.....  .++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.++++....+  ...+++++.+|+.+
T Consensus        30 ~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~  107 (267)
T 3kkz_A           30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSG--LQNRVTGIVGSMDD  107 (267)
T ss_dssp             CHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTS
T ss_pred             CHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcC--CCcCcEEEEcChhh
Confidence            3334444444443  3578999999999999999999876799999999999999987754332  34579999999998


Q ss_pred             ccccCCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        353 LSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       353 ~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      ++.. .++||+|++..+++|+ ++..+++.+  .|.|+|.
T Consensus       108 ~~~~-~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~  145 (267)
T 3kkz_A          108 LPFR-NEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGY  145 (267)
T ss_dssp             CCCC-TTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEE
T ss_pred             CCCC-CCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCE
Confidence            7754 6899999999999999 788887763  6667653

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.28  E-value=6.4e-12  Score=123.45  Aligned_cols=119  Identities=21%  Similarity=0.309  Sum_probs=89.5

Q ss_pred             ceeeecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeC-CHHHHHHhcCccccc--ccCCC---
Q psy11730        268 GYKIWECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDY-NQEVIESLTLPNILM--NTDNL---  340 (496)
Q Consensus       268 ~~~~~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~-s~~~i~~a~~~~~~~--~~~~~---  340 (496)
                      |..+|+++..|++++..... .++++|||||||+|.+++.+++.+..+|+|+|+ |+.|++.++++...+  .....   
T Consensus        57 g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~  136 (281)
T 3bzb_A           57 TSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETV  136 (281)
T ss_dssp             -----CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC--------
T ss_pred             CceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccC
Confidence            55679999999999998764 568899999999999999999988779999999 899999988765221  00111   


Q ss_pred             --CceEEEecccCCccc-c----CCCceeEEEEccccccccchHhHhhee--eec
Q psy11730        341 --EKCKFYHGDWGSLSA-V----IHSKFDIILTSETIYSVANYNKLLTVW--CLF  386 (496)
Q Consensus       341 --~~v~~~~~d~~~~~~-~----~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~  386 (496)
                        .++++...++.+... .    ..++||+|++.+++++.++...+++..  .|.
T Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk  191 (281)
T 3bzb_A          137 KRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLA  191 (281)
T ss_dssp             --CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred             CCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence              478888887765321 1    257899999999999999999888763  455

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.28  E-value=7.8e-12  Score=120.70  Aligned_cols=113  Identities=23%  Similarity=0.232  Sum_probs=91.4

Q ss_pred             ecchHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .+....+++.+.+...+ ++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++...     ..+++++.+|+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~  111 (266)
T 3ujc_A           37 SSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG-----NNKIIFEANDI  111 (266)
T ss_dssp             STTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS-----CTTEEEEECCT
T ss_pred             ccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc-----CCCeEEEECcc
Confidence            34455566666666654 4779999999999999999987667999999999999998876532     16899999999


Q ss_pred             CCccccCCCceeEEEEccccccc--cchHhHhhee--eecCCCC
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSV--ANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~--~~~~~~~~~~--~l~p~~~  390 (496)
                      .+++.. +++||+|++..+++|+  .++..+++..  .|.|+|.
T Consensus       112 ~~~~~~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~  154 (266)
T 3ujc_A          112 LTKEFP-ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGT  154 (266)
T ss_dssp             TTCCCC-TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccCCCC-CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCE
Confidence            987654 6899999999999999  8888888763  6677653

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.28  E-value=6.8e-12  Score=124.34  Aligned_cols=56  Identities=27%  Similarity=0.395  Sum_probs=50.7

Q ss_pred             CCCchhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCCCChhhHHHHhhcCCc
Q psy11730        428 EWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFPVVYHKTIRGRP  483 (496)
Q Consensus       428 ~~~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~~~~~~~~~~~~~~~  483 (496)
                      +.+++.++|.+||++|||+||+|||.|+..||+|+.||+|+.|+...++.|-.-|-
T Consensus       289 gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~  344 (392)
T 2ypd_A          289 GVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRL  344 (392)
T ss_dssp             CCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC--
T ss_pred             CCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHhh
Confidence            45789999999999999999999999999999999999999999999988766653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.27  E-value=6.2e-12  Score=121.54  Aligned_cols=98  Identities=14%  Similarity=0.099  Sum_probs=81.5

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++....   ...++.+..+|+++++.. +++||+|++.
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~---~~~~v~~~~~d~~~l~~~-~~~fD~V~~~  110 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGN---GHQQVEYVQGDAEQMPFT-DERFHIVTCR  110 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCC-CCCSC-TTCEEEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhc---CCCceEEEEecHHhCCCC-CCCEEEEEEh
Confidence            3678999999999999999888875 9999999999999988765332   235799999999987754 6899999999


Q ss_pred             cccccccchHhHhhee--eecCCCC
Q psy11730        368 ETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      .+++|++++..++++.  .|.|+|.
T Consensus       111 ~~l~~~~d~~~~l~~~~r~LkpgG~  135 (260)
T 1vl5_A          111 IAAHHFPNPASFVSEAYRVLKKGGQ  135 (260)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             hhhHhcCCHHHHHHHHHHHcCCCCE
Confidence            9999999999988873  6777653

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.27  E-value=9.1e-12  Score=121.13  Aligned_cols=112  Identities=19%  Similarity=0.187  Sum_probs=90.2

Q ss_pred             hHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        275 TFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       275 ~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ...+++.+.+...+ ++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++....+  ...++.+..+|+.++
T Consensus        46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~  123 (273)
T 3bus_A           46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDL  123 (273)
T ss_dssp             HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECccccC
Confidence            34556666666554 578999999999999999998767899999999999999887653322  345799999999987


Q ss_pred             cccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        354 SAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +.. +++||+|++..+++|+++...+++..  .|.|+|
T Consensus       124 ~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG  160 (273)
T 3bus_A          124 PFE-DASFDAVWALESLHHMPDRGRALREMARVLRPGG  160 (273)
T ss_dssp             CSC-TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEE
T ss_pred             CCC-CCCccEEEEechhhhCCCHHHHHHHHHHHcCCCe
Confidence            654 57999999999999999999988763  666665

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.27  E-value=1e-11  Score=119.45  Aligned_cols=102  Identities=17%  Similarity=0.284  Sum_probs=85.5

Q ss_pred             HHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC
Q psy11730        281 FIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS  359 (496)
Q Consensus       281 ~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  359 (496)
                      .+..... .++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.++++..      ..++.++.+|+.+++.. ++
T Consensus        35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~-~~  107 (253)
T 3g5l_A           35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIE-PD  107 (253)
T ss_dssp             HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCC-TT
T ss_pred             HHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCC-CC
Confidence            3444443 4688999999999999999999988899999999999999887652      46899999999887653 68


Q ss_pred             ceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        360 KFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       360 ~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +||+|++..+++|++++..+++..  .|.|+|
T Consensus       108 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG  139 (253)
T 3g5l_A          108 AYNVVLSSLALHYIASFDDICKKVYINLKSSG  139 (253)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE
T ss_pred             CeEEEEEchhhhhhhhHHHHHHHHHHHcCCCc
Confidence            999999999999999999988763  566665

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.26  E-value=1.7e-11  Score=117.99  Aligned_cols=113  Identities=18%  Similarity=0.287  Sum_probs=88.3

Q ss_pred             chHHHHHHHHhCC-CC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        274 CTFDLLNFIKDNV-AV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       274 ~~~~l~~~l~~~~-~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      ....+...+.... .+ ++.+|||||||+|.++..+++.++.+|+|+|+|+.+++.++++....+  ...+++++.+|+.
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~  106 (257)
T 3f4k_A           29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSMD  106 (257)
T ss_dssp             CCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTT
T ss_pred             CCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChh
Confidence            3344455555544 33 467999999999999999999887899999999999999887654332  3346999999998


Q ss_pred             CccccCCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        352 SLSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +++.. +++||+|++..+++|+ ++..+++.+  .|.|+|.
T Consensus       107 ~~~~~-~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~  145 (257)
T 3f4k_A          107 NLPFQ-NEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGF  145 (257)
T ss_dssp             SCSSC-TTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEE
T ss_pred             hCCCC-CCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcE
Confidence            87754 6899999999999999 778887763  6667653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.26  E-value=5e-12  Score=118.14  Aligned_cols=110  Identities=13%  Similarity=0.158  Sum_probs=88.3

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .+++.+.+....++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++....+  ...+++++.+|+.+++..
T Consensus        31 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           31 IIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADAN--LNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcc--ccCceEEEEcCHHHCCCC
Confidence            345555555555555999999999999999998855789999999999999987754322  345899999999987753


Q ss_pred             CCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        357 IHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                       +++||+|++..+++|++++..+++..  .|.|++
T Consensus       109 -~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG  142 (219)
T 3dlc_A          109 -DNYADLIVSRGSVFFWEDVATAFREIYRILKSGG  142 (219)
T ss_dssp             -TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE
T ss_pred             -cccccEEEECchHhhccCHHHHHHHHHHhCCCCC
Confidence             68999999999999999999988773  566665

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.26  E-value=1.1e-11  Score=122.44  Aligned_cols=112  Identities=18%  Similarity=0.214  Sum_probs=89.3

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      .+.+.|......++.+|||||||+|.++..+++.  ...+|+|+|+|+.|++.|+++.... .+...+++|+++|+++++
T Consensus        24 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~v~~~~~d~~~~~  102 (299)
T 3g5t_A           24 DFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS-PDTYKNVSFKISSSDDFK  102 (299)
T ss_dssp             HHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC-C-CCTTEEEEECCTTCCG
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc-cCCCCceEEEEcCHHhCC
Confidence            4556666655557889999999999999999973  5689999999999999998765332 123578999999999887


Q ss_pred             ccC-----CCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        355 AVI-----HSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       355 ~~~-----~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      ...     .++||+|++..+++|+ ++..+++..  .|.|+|.
T Consensus       103 ~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~  144 (299)
T 3g5t_A          103 FLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGT  144 (299)
T ss_dssp             GGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEE
T ss_pred             ccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcE
Confidence            542     2799999999999999 999988773  6777653

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.24  E-value=1e-11  Score=120.38  Aligned_cols=122  Identities=11%  Similarity=0.117  Sum_probs=90.4

Q ss_pred             cccceeecccccCCCccccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHH
Q psy11730        248 EYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIES  327 (496)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~  327 (496)
                      +.+..+.+....+...+...+|++..++..|+.++.-  .+++.+|||+|||+|.+++.+++.+..+|+|+|+++.+++.
T Consensus        10 ~~e~~d~~~~~~~~i~q~~~~~~~~~d~~ll~~~~~~--~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~   87 (259)
T 3lpm_A           10 GDERLDYLLAENLRIIQSPSVFSFSIDAVLLAKFSYL--PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADM   87 (259)
T ss_dssp             TTCEEEEETTTTEEEEEBTTTBCCCHHHHHHHHHCCC--CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHH
T ss_pred             CCCeeccccCCCEEEEeCCCCccCcHHHHHHHHHhcC--CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHH
Confidence            3455555555555555556677777777767666521  12578999999999999999999887899999999999999


Q ss_pred             hcCcccccccCCCCceEEEecccCCccccC-CCceeEEEEccccccc
Q psy11730        328 LTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIILTSETIYSV  373 (496)
Q Consensus       328 a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~~~l~~~  373 (496)
                      |+++....+  ...+++++++|+.++.... .++||+|+++++++..
T Consensus        88 a~~n~~~~~--~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~  132 (259)
T 3lpm_A           88 AKRSVAYNQ--LEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFAT  132 (259)
T ss_dssp             HHHHHHHTT--CTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC---
T ss_pred             HHHHHHHCC--CcccEEEEECcHHHhhhhhccCCccEEEECCCCCCC
Confidence            987754332  3357999999999876422 5799999999998765

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.24  E-value=1.9e-11  Score=116.47  Aligned_cols=104  Identities=21%  Similarity=0.265  Sum_probs=86.3

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .+++++..... ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++.      ...+++++.+|+.+++..
T Consensus        42 ~~~~~l~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~~~~d~~~~~~~  113 (242)
T 3l8d_A           42 TIIPFFEQYVK-KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG------EGPDLSFIKGDLSSLPFE  113 (242)
T ss_dssp             THHHHHHHHSC-TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT------CBTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHHcC-CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc------ccCCceEEEcchhcCCCC
Confidence            45566655543 678999999999999999998854 8999999999999998764      346899999999987654


Q ss_pred             CCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        357 IHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                       +++||+|++..+++|++++..+++..  .|.|++
T Consensus       114 -~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG  147 (242)
T 3l8d_A          114 -NEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDG  147 (242)
T ss_dssp             -TTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEE
T ss_pred             -CCCccEEEEcChHhhccCHHHHHHHHHHHhCCCe
Confidence             68999999999999999999888763  666665

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.24  E-value=5.3e-12  Score=127.98  Aligned_cols=166  Identities=22%  Similarity=0.231  Sum_probs=105.3

Q ss_pred             ccCCccccceeecccccCCCccccCceeeecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCC
Q psy11730        243 RTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYN  321 (496)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s  321 (496)
                      ...+|+.+....+++.|+.+..+..         ...+.|.... ..++++|||||||+|.+++.+++.+..+|+|+|+|
T Consensus        28 ~~~yf~~y~~~~~~~~~l~d~~r~~---------~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s   98 (349)
T 3q7e_A           28 KDYYFDSYAHFGIHEELLKDEVRTL---------TYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS   98 (349)
T ss_dssp             ---------CCHHHHHHHHCHHHHH---------HHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS
T ss_pred             HHHHHHhhhhhHHHHHHhccHHHHH---------HHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH
Confidence            3456777766777777777654322         2223333322 24688999999999999999999988899999999


Q ss_pred             HHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccc---cchHhHhhee--eecCCCCC---cc
Q psy11730        322 QEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSV---ANYNKLLTVW--CLFPTHTP---KD  393 (496)
Q Consensus       322 ~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~---~~~~~~~~~~--~l~p~~~~---~~  393 (496)
                       +|++.|+++....+  ...+++++.+|+++++.. .++||+|+++.+.+++   .+++.++...  .|.|+|..   ..
T Consensus        99 -~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  174 (349)
T 3q7e_A           99 -SISDYAVKIVKANK--LDHVVTIIKGKVEEVELP-VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA  174 (349)
T ss_dssp             -THHHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             -HHHHHHHHHHHHcC--CCCcEEEEECcHHHccCC-CCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccc
Confidence             59998887654332  344699999999998654 5899999998775554   6777776542  44554421   11


Q ss_pred             cEEEeeccCCcccccccchhhHhcCCCC
Q psy11730        394 LLKVTSAEGGKQRDEAITWFSIIYPRTQ  421 (496)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (496)
                      ..++............+.+|.+.|+...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~w~~~~G~d~  202 (349)
T 3q7e_A          175 TLYVTAIEDRQYKDYKIHWWENVYGFDM  202 (349)
T ss_dssp             EEEEEEECCHHHHHHHTGGGGCBTTBCC
T ss_pred             eEEEeeecChhhhhhhhcccccccCcch
Confidence            2333333333334456778887777654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.23  E-value=1.4e-11  Score=120.73  Aligned_cols=102  Identities=22%  Similarity=0.286  Sum_probs=84.1

Q ss_pred             CCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        286 VAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       286 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      ...++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++....+  ...+++++.+|+.+++...+++||+|+
T Consensus        65 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~  141 (285)
T 4htf_A           65 MGPQKLRVLDAGGGEGQTAIKMAERG-HQVILCDLSAQMIDRAKQAAEAKG--VSDNMQFIHCAAQDVASHLETPVDLIL  141 (285)
T ss_dssp             TCSSCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-C--CGGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred             cCCCCCEEEEeCCcchHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEEcCHHHhhhhcCCCceEEE
Confidence            34457899999999999999999885 589999999999999987653321  236899999999988744478999999


Q ss_pred             EccccccccchHhHhhee--eecCCCC
Q psy11730        366 TSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       366 ~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +..+++|++++..++++.  .|.|+|.
T Consensus       142 ~~~~l~~~~~~~~~l~~~~~~LkpgG~  168 (285)
T 4htf_A          142 FHAVLEWVADPRSVLQTLWSVLRPGGV  168 (285)
T ss_dssp             EESCGGGCSCHHHHHHHHHHTEEEEEE
T ss_pred             ECchhhcccCHHHHHHHHHHHcCCCeE
Confidence            999999999999988873  6677653

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.23  E-value=2.5e-11  Score=120.10  Aligned_cols=108  Identities=11%  Similarity=0.111  Sum_probs=84.7

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      ..++.+.....+ ++.+|||||||+|.++..+++..+.+|+|+|+|+.|++.++++....+  ...++++..+|+.++  
T Consensus        59 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~--  134 (302)
T 3hem_A           59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWEEF--  134 (302)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSC--CSSCEEEEECCGGGC--
T ss_pred             HHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECCHHHc--
Confidence            345555555544 477999999999999999998844889999999999999988754322  344899999999876  


Q ss_pred             cCCCceeEEEEccccccccch---------HhHhhee--eecCCCC
Q psy11730        356 VIHSKFDIILTSETIYSVANY---------NKLLTVW--CLFPTHT  390 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~---------~~~~~~~--~l~p~~~  390 (496)
                        +++||+|++..+++|++++         ..+++..  .|.|+|.
T Consensus       135 --~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~  178 (302)
T 3hem_A          135 --DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGR  178 (302)
T ss_dssp             --CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCE
T ss_pred             --CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcE
Confidence              6899999999999999665         5666652  6666653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.22  E-value=8.3e-12  Score=126.05  Aligned_cols=135  Identities=20%  Similarity=0.209  Sum_probs=92.7

Q ss_pred             cccCCccccceeecccccCCCccccCceeeecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeC
Q psy11730        242 LRTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDY  320 (496)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~  320 (496)
                      .+..+|..+.....+..|+.+..+.         ....+.|.+... .++++|||||||+|.+++.+++.|..+|+|+|+
T Consensus        25 ~d~~Y~~~y~~~~~~~~ml~d~~r~---------~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~   95 (340)
T 2fyt_A           25 EDGVYFSSYGHYGIHEEMLKDKIRT---------ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQ   95 (340)
T ss_dssp             -----CCGGGSHHHHHHHHTCHHHH---------HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEES
T ss_pred             chhhHHHhhcchhHHHHHhcCHHHH---------HHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEECh
Confidence            3445777766666667777664332         222344544433 468899999999999999999998789999999


Q ss_pred             CHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccc---cccccchHhHhhe--eeecCCC
Q psy11730        321 NQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSET---IYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       321 s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~---l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      |+ |++.|+++....+  ...+++++.+|+++++.. .++||+|+++.+   +.+..+++.++..  ..|.|+|
T Consensus        96 s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~-~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG  165 (340)
T 2fyt_A           96 SE-ILYQAMDIIRLNK--LEDTITLIKGKIEEVHLP-VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGG  165 (340)
T ss_dssp             ST-HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCS-CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEE
T ss_pred             HH-HHHHHHHHHHHcC--CCCcEEEEEeeHHHhcCC-CCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCc
Confidence            96 9988876643322  236899999999987653 478999999874   4445666666654  2455554

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.22  E-value=1.6e-11  Score=117.41  Aligned_cols=110  Identities=20%  Similarity=0.143  Sum_probs=87.3

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      |+....+++.+.   ..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.++++....+   ..++.+..+|++
T Consensus         7 ~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~   79 (239)
T 1xxl_A            7 HHSLGLMIKTAE---CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAE   79 (239)
T ss_dssp             HHHHHHHHHHHT---CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTT
T ss_pred             CCCcchHHHHhC---cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcC---CCCeEEEecccc
Confidence            444444555543   23678999999999999999888774 89999999999999887653322   357999999999


Q ss_pred             CccccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        352 SLSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +++.. +++||+|++..+++|++++..++++.  .|.|+|
T Consensus        80 ~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG  118 (239)
T 1xxl_A           80 SLPFP-DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDG  118 (239)
T ss_dssp             BCCSC-TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE
T ss_pred             cCCCC-CCcEEEEEECCchhhccCHHHHHHHHHHHcCCCc
Confidence            87653 58999999999999999999988763  667765

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.21  E-value=3.8e-11  Score=117.74  Aligned_cols=110  Identities=14%  Similarity=0.230  Sum_probs=85.8

Q ss_pred             hHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        275 TFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       275 ~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ...+++.+.+...+ ++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++....  +...++++..+|+.++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~  126 (287)
T 1kpg_A           49 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS--ENLRSKRVLLAGWEQF  126 (287)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC--CCCSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCCCCeEEEECChhhC
Confidence            33455666666554 47799999999999999998554569999999999999988765322  2345899999999765


Q ss_pred             cccCCCceeEEEEccccccc--cchHhHhhee--eecCCCC
Q psy11730        354 SAVIHSKFDIILTSETIYSV--ANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~--~~~~~~~~~~--~l~p~~~  390 (496)
                      +    ++||+|++..+++|+  .++..++++.  .|.|+|.
T Consensus       127 ~----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  163 (287)
T 1kpg_A          127 D----EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGV  163 (287)
T ss_dssp             C----CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCE
T ss_pred             C----CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCE
Confidence            4    789999999999999  6788888763  6667653

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.21  E-value=1.9e-11  Score=120.44  Aligned_cols=111  Identities=11%  Similarity=0.129  Sum_probs=87.7

Q ss_pred             HHHHHHHhCC----CC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        277 DLLNFIKDNV----AV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       277 ~l~~~l~~~~----~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      .+++.+....    .+ ++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++....+  ...++++..+|+.
T Consensus        65 ~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~  142 (297)
T 2o57_A           65 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFL  142 (297)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTT
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEEcCcc
Confidence            3444444443    43 578999999999999999998755689999999999999887653322  3467999999999


Q ss_pred             CccccCCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        352 SLSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +++.. +++||+|++..+++|++++..++++.  .|.|+|.
T Consensus       143 ~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~  182 (297)
T 2o57_A          143 EIPCE-DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGV  182 (297)
T ss_dssp             SCSSC-TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             cCCCC-CCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeE
Confidence            87754 67999999999999999998888773  6777653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.21  E-value=2.4e-11  Score=111.13  Aligned_cols=89  Identities=11%  Similarity=0.069  Sum_probs=69.9

Q ss_pred             HHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        276 FDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       276 ~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      ..++..+......++.+|||||||+|.++..+++. ..+|+|+|+|+.|++.|+++....+   ..+++++..+.+.+..
T Consensus         9 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~~~~~l~~   84 (185)
T 3mti_A            9 IHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLG---IENTELILDGHENLDH   84 (185)
T ss_dssp             HHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHT---CCCEEEEESCGGGGGG
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCcHHHHHh
Confidence            34444444444446889999999999999999988 6789999999999999988764432   3689999988887654


Q ss_pred             cCCCceeEEEEcc
Q psy11730        356 VIHSKFDIILTSE  368 (496)
Q Consensus       356 ~~~~~fD~Ii~~~  368 (496)
                      ..+++||+|+++.
T Consensus        85 ~~~~~fD~v~~~~   97 (185)
T 3mti_A           85 YVREPIRAAIFNL   97 (185)
T ss_dssp             TCCSCEEEEEEEE
T ss_pred             hccCCcCEEEEeC
Confidence            4467899999874

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.20  E-value=2.3e-11  Score=117.52  Aligned_cols=113  Identities=14%  Similarity=0.091  Sum_probs=82.5

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccc---------ccc-----CCCC
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNIL---------MNT-----DNLE  341 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~---------~~~-----~~~~  341 (496)
                      .+.+++..... .++.+|||+|||+|..+..|++.|. +|+|||+|+.|++.|++++..         .+.     ....
T Consensus        55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (252)
T 2gb4_A           55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG  133 (252)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC
Confidence            34455543222 3678999999999999999999876 899999999999998755421         000     1236


Q ss_pred             ceEEEecccCCccccCCCceeEEEEccccccccc--hHhHhhe--eeecCCCC
Q psy11730        342 KCKFYHGDWGSLSAVIHSKFDIILTSETIYSVAN--YNKLLTV--WCLFPTHT  390 (496)
Q Consensus       342 ~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~--~~~~~~~--~~l~p~~~  390 (496)
                      +++|+++|+.+++....++||+|++..++++++.  ...+++.  ..|.|+|.
T Consensus       134 ~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~  186 (252)
T 2gb4_A          134 SISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQ  186 (252)
T ss_dssp             SEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEE
T ss_pred             ceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeE
Confidence            8999999999987643379999999999998854  3345554  25667653

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=4e-11  Score=116.19  Aligned_cols=99  Identities=13%  Similarity=0.169  Sum_probs=82.0

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+++.+.+.... ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++.+.         +++|+.+|+++++.
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~---------~~~~~~~d~~~~~~   90 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP---------QVEWFTGYAENLAL   90 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT---------TEEEECCCTTSCCS
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc---------CCEEEECchhhCCC
Confidence            455556555543 57899999999999999998854 68999999999999877542         89999999998775


Q ss_pred             cCCCceeEEEEccccccccchHhHhhee--eec
Q psy11730        356 VIHSKFDIILTSETIYSVANYNKLLTVW--CLF  386 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~  386 (496)
                      . +++||+|++..+++|++++..++++.  .|.
T Consensus        91 ~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk  122 (261)
T 3ege_A           91 P-DKSVDGVISILAIHHFSHLEKSFQEMQRIIR  122 (261)
T ss_dssp             C-TTCBSEEEEESCGGGCSSHHHHHHHHHHHBC
T ss_pred             C-CCCEeEEEEcchHhhccCHHHHHHHHHHHhC
Confidence            4 68999999999999999999998873  455

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.18  E-value=3.9e-11  Score=116.91  Aligned_cols=110  Identities=21%  Similarity=0.253  Sum_probs=89.3

Q ss_pred             HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ..+.+.+.....+ ++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.++++....   ...++++..+|+.++
T Consensus        23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~   99 (276)
T 3mgg_A           23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN---GIKNVKFLQANIFSL   99 (276)
T ss_dssp             CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCGGGC
T ss_pred             HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CCCCcEEEEcccccC
Confidence            3455666655543 578999999999999999998874 79999999999999988765332   245799999999987


Q ss_pred             cccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        354 SAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +.. +++||+|++..+++|+++++.+++..  .|.|++
T Consensus       100 ~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG  136 (276)
T 3mgg_A          100 PFE-DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGG  136 (276)
T ss_dssp             CSC-TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE
T ss_pred             CCC-CCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCc
Confidence            754 68999999999999999999888763  666765

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.18  E-value=5.5e-11  Score=111.63  Aligned_cols=101  Identities=17%  Similarity=0.154  Sum_probs=78.4

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccC--CCCceEEEecccCCccccCCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTD--NLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      .++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.++++....+..  ...+++++.+|+...+.. .++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v  106 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR-FHGYDAA  106 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG-GCSCSEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc-CCCcCEE
Confidence            3578999999999999999999876 79999999999999998765322210  012799999998765543 4789999


Q ss_pred             EEccccccccch--HhHhhee--eecCCC
Q psy11730        365 LTSETIYSVANY--NKLLTVW--CLFPTH  389 (496)
Q Consensus       365 i~~~~l~~~~~~--~~~~~~~--~l~p~~  389 (496)
                      ++..+++|+++.  ..+++..  .|.|++
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG  135 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQPKI  135 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCSE
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcCCCE
Confidence            999999999755  6777652  555543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.18  E-value=2.7e-11  Score=113.61  Aligned_cols=98  Identities=19%  Similarity=0.195  Sum_probs=82.1

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||||||+|.++..+++.+ + .+|+|+|+|+.+++.++++....+   ..++++..+|+.+++.. +++||+|+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~-~~~fD~v~  111 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG---LKNVEVLKSEENKIPLP-DNTVDFIF  111 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECBTTBCSSC-SSCEEEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEecccccCCCC-CCCeeEEE
Confidence            357899999999999999999886 3 699999999999999987754432   34799999999887643 57899999


Q ss_pred             EccccccccchHhHhhee--eecCCC
Q psy11730        366 TSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       366 ~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +..+++|++++..+++..  .|.|++
T Consensus       112 ~~~~l~~~~~~~~~l~~~~~~LkpgG  137 (219)
T 3dh0_A          112 MAFTFHELSEPLKFLEELKRVAKPFA  137 (219)
T ss_dssp             EESCGGGCSSHHHHHHHHHHHEEEEE
T ss_pred             eehhhhhcCCHHHHHHHHHHHhCCCe
Confidence            999999999998888763  566665

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.17  E-value=4.6e-11  Score=113.74  Aligned_cols=95  Identities=21%  Similarity=0.321  Sum_probs=80.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.++++..      ..++++..+|+.+++.. .++||+|++.
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~-~~~fD~v~~~  114 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP------DTGITYERADLDKLHLP-QDSFDLAYSS  114 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC------SSSEEEEECCGGGCCCC-TTCEEEEEEE
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc------cCCceEEEcChhhccCC-CCCceEEEEe
Confidence            4678999999999999999999877699999999999999887642      23789999999887643 6789999999


Q ss_pred             cccccccchHhHhhee--eecCCC
Q psy11730        368 ETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      .+++|+++...+++..  .|.|++
T Consensus       115 ~~l~~~~~~~~~l~~~~~~L~pgG  138 (243)
T 3bkw_A          115 LALHYVEDVARLFRTVHQALSPGG  138 (243)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEE
T ss_pred             ccccccchHHHHHHHHHHhcCcCc
Confidence            9999999998888763  566655

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.17  E-value=3e-11  Score=113.16  Aligned_cols=105  Identities=15%  Similarity=0.193  Sum_probs=82.3

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+...+..... .++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++...     ..+++++.+|+.+++.
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~  111 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKR-----WSHISWAATDILQFST  111 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTT-----CSSEEEEECCTTTCCC
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhccc-----CCCeEEEEcchhhCCC
Confidence            44445544433 346799999999999999998887 5899999999999998876532     3489999999998873


Q ss_pred             cCCCceeEEEEccccccccchHh---Hhhe--eeecCCC
Q psy11730        356 VIHSKFDIILTSETIYSVANYNK---LLTV--WCLFPTH  389 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~~~---~~~~--~~l~p~~  389 (496)
                        .++||+|++..+++|+++++.   +++.  ..|.|++
T Consensus       112 --~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG  148 (216)
T 3ofk_A          112 --AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGG  148 (216)
T ss_dssp             --SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEE
T ss_pred             --CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCC
Confidence              789999999999999998753   3544  2566655

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.17  E-value=3.8e-11  Score=115.23  Aligned_cols=96  Identities=18%  Similarity=0.191  Sum_probs=79.4

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.++++...     ..+++++.+|+.+++.. .++||+|++.
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~-~~~fD~v~~~  165 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-----MPVGKFILASMETATLP-PNTYDLIVIQ  165 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-----SSEEEEEESCGGGCCCC-SSCEEEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc-----CCceEEEEccHHHCCCC-CCCeEEEEEc
Confidence            45789999999999999999988878899999999999998876422     26799999999887643 5799999999


Q ss_pred             cccccc--cchHhHhhee--eecCCC
Q psy11730        368 ETIYSV--ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~--~~~~~~~~~~--~l~p~~  389 (496)
                      .+++|+  .+...+++..  .|.|++
T Consensus       166 ~~l~~~~~~~~~~~l~~~~~~LkpgG  191 (254)
T 1xtp_A          166 WTAIYLTDADFVKFFKHCQQALTPNG  191 (254)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCe
Confidence            999999  4577777652  566655

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.17  E-value=6.1e-11  Score=111.39  Aligned_cols=100  Identities=18%  Similarity=0.205  Sum_probs=78.5

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccC--CCCceEEEecccCCccccCCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTD--NLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      .++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.++++....+..  ...+++++.+|+...+.. .++||+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V  106 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKR-FSGYDAA  106 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGG-GTTCSEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccc-cCCCCEE
Confidence            3678999999999999999998876 79999999999999998765332210  012799999999766543 5789999


Q ss_pred             EEccccccccch--HhHhhee--eecCC
Q psy11730        365 LTSETIYSVANY--NKLLTVW--CLFPT  388 (496)
Q Consensus       365 i~~~~l~~~~~~--~~~~~~~--~l~p~  388 (496)
                      ++..+++|+++.  ..+++..  .|.|+
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  134 (219)
T 3jwg_A          107 TVIEVIEHLDENRLQAFEKVLFEFTRPQ  134 (219)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred             EEHHHHHhCCHHHHHHHHHHHHHhhCCC
Confidence            999999999865  5677652  45554

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.17  E-value=2.6e-11  Score=124.15  Aligned_cols=133  Identities=20%  Similarity=0.245  Sum_probs=96.4

Q ss_pred             ccCCccccceeecccccCCCccccCceeeecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCC
Q psy11730        243 RTPLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYN  321 (496)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s  321 (496)
                      ...+|..+...+.++.|+.+..+         .....+.|..... .++++|||||||+|.+++.+++.|.++|+|+|+|
T Consensus        25 ~~~yf~~ya~~~~~~~~l~d~~r---------~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s   95 (376)
T 3r0q_C           25 YAQYFCTYSFLYHQKDMLSDRVR---------MDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT   95 (376)
T ss_dssp             ---CTTGGGCHHHHHHHHTCHHH---------HHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS
T ss_pred             HHHHHHHHHHhHHHHHHhcChHH---------HHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH
Confidence            34677777777777777777433         2334455555543 5688999999999999999999988899999999


Q ss_pred             HHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccc---cchHhHhhee--eecCCC
Q psy11730        322 QEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSV---ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       322 ~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~---~~~~~~~~~~--~l~p~~  389 (496)
                       .|++.|+++....+  ...+++++.+|++++..  .++||+|+++.+.+++   ..++.+++.+  .|.|+|
T Consensus        96 -~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG  163 (376)
T 3r0q_C           96 -KMADHARALVKANN--LDHIVEVIEGSVEDISL--PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTG  163 (376)
T ss_dssp             -TTHHHHHHHHHHTT--CTTTEEEEESCGGGCCC--SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEE
T ss_pred             -HHHHHHHHHHHHcC--CCCeEEEEECchhhcCc--CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCe
Confidence             99999877653332  34569999999998875  3899999998776666   4466666542  445544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.17  E-value=6.1e-11  Score=118.02  Aligned_cols=108  Identities=11%  Similarity=0.049  Sum_probs=86.2

Q ss_pred             HHHHHhCCC-C-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        279 LNFIKDNVA-V-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       279 ~~~l~~~~~-~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .+.+.+... + ++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+  ...+++++.+|+.+++..
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~  182 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTPFD  182 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCCC
T ss_pred             HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhcCCCC
Confidence            445555554 4 477999999999999999998855789999999999999987754332  345899999999987643


Q ss_pred             CCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        357 IHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                       +++||+|++..+++|+ ++..+++..  .|.|+|.
T Consensus       183 -~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~  216 (312)
T 3vc1_A          183 -KGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGR  216 (312)
T ss_dssp             -TTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEE
T ss_pred             -CCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcE
Confidence             5899999999999999 588887763  6777664

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.17  E-value=4.4e-11  Score=113.95  Aligned_cols=92  Identities=12%  Similarity=0.117  Sum_probs=77.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++..       .+++++.+|++++.  .+++||+|++.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-------~~v~~~~~d~~~~~--~~~~fD~v~~~  110 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK-------DGITYIHSRFEDAQ--LPRRYDNIVLT  110 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGCC--CSSCEEEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhh-------CCeEEEEccHHHcC--cCCcccEEEEh
Confidence            3677999999999999999988775 79999999999999887641       17999999998873  36899999999


Q ss_pred             cccccccchHhHhhee---eecCCC
Q psy11730        368 ETIYSVANYNKLLTVW---CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~---~l~p~~  389 (496)
                      .+++|++++..+++++   .|.|+|
T Consensus       111 ~~l~~~~~~~~~l~~~~~~~LkpgG  135 (250)
T 2p7i_A          111 HVLEHIDDPVALLKRINDDWLAEGG  135 (250)
T ss_dssp             SCGGGCSSHHHHHHHHHHTTEEEEE
T ss_pred             hHHHhhcCHHHHHHHHHHHhcCCCC
Confidence            9999999998888752   355554

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.16  E-value=6.6e-11  Score=111.45  Aligned_cols=107  Identities=20%  Similarity=0.239  Sum_probs=83.7

Q ss_pred             HHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        276 FDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       276 ~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      ..+.+.+.+... .+.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++....    ..+++++.+|+.+++.
T Consensus        26 ~~~~~~l~~~~~-~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~   99 (227)
T 1ve3_A           26 ETLEPLLMKYMK-KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSF   99 (227)
T ss_dssp             HHHHHHHHHSCC-SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCS
T ss_pred             HHHHHHHHHhcC-CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc----CCCceEEECchhcCCC
Confidence            345566665543 378999999999999999998877 8999999999999988765322    2679999999988664


Q ss_pred             cCCCceeEEEEccc--cccccchHhHhhee--eecCCC
Q psy11730        356 VIHSKFDIILTSET--IYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~--l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      . .++||+|+++.+  +++..+...+++..  .|.|+|
T Consensus       100 ~-~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG  136 (227)
T 1ve3_A          100 E-DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG  136 (227)
T ss_dssp             C-TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEE
T ss_pred             C-CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCc
Confidence            3 578999999999  66667777777663  566654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.16  E-value=3.2e-11  Score=111.83  Aligned_cols=90  Identities=17%  Similarity=0.161  Sum_probs=77.0

Q ss_pred             CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSET  369 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~  369 (496)
                      +.+|||||||+|.++..++..+. +|+|+|+|+.|++.++++        ..++.++.+|+.+++.. +++||+|++..+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~-~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQT--------HPSVTFHHGTITDLSDS-PKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHH--------CTTSEEECCCGGGGGGS-CCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHh--------CCCCeEEeCcccccccC-CCCeEEEEehhh
Confidence            78999999999999999998865 899999999999998865        24789999999987654 689999999999


Q ss_pred             ccccc--chHhHhhee--eecCCC
Q psy11730        370 IYSVA--NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       370 l~~~~--~~~~~~~~~--~l~p~~  389 (496)
                      ++|++  +...+++..  .|.|+|
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pgG  135 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDGG  135 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEEE
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCCc
Confidence            99996  778888763  566655

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.15  E-value=7.8e-11  Score=113.54  Aligned_cols=96  Identities=16%  Similarity=0.193  Sum_probs=80.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++.    .....++.+..+|+++++.. +++||+|++..
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~~~d~~~~~~~-~~~fD~v~~~~  112 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKI----AGVDRKVQVVQADARAIPLP-DESVHGVIVVH  112 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHT----TTSCTTEEEEESCTTSCCSC-TTCEEEEEEES
T ss_pred             CCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh----hccCCceEEEEcccccCCCC-CCCeeEEEECC
Confidence            47899999999999999998875 68999999999999988764    12356899999999887643 67899999999


Q ss_pred             ccccccchHhHhhee--eecCCCC
Q psy11730        369 TIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       369 ~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +++|+++...++++.  .|.|+|.
T Consensus       113 ~l~~~~~~~~~l~~~~~~L~pgG~  136 (263)
T 2yqz_A          113 LWHLVPDWPKVLAEAIRVLKPGGA  136 (263)
T ss_dssp             CGGGCTTHHHHHHHHHHHEEEEEE
T ss_pred             chhhcCCHHHHHHHHHHHCCCCcE
Confidence            999999999888763  6677653

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.15  E-value=3.3e-11  Score=115.12  Aligned_cols=97  Identities=14%  Similarity=0.160  Sum_probs=79.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.++++....+   ..++.++.+|+.+++.. .++||+|++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~-~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPE-PDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCC-SSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC---CceEEEEEcChhhcCCC-CCCEEEEEEcc
Confidence            478999999999999999988887799999999999999987654321   34789999998887653 56899999999


Q ss_pred             ccccccchH--hHhhee--eecCCC
Q psy11730        369 TIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       369 ~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                      +++|+++..  .+++..  .|.|++
T Consensus       155 ~l~~~~~~~~~~~l~~~~~~LkpgG  179 (241)
T 2ex4_A          155 VIGHLTDQHLAEFLRRCKGSLRPNG  179 (241)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCe
Confidence            999998744  666652  566655

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.15  E-value=5.1e-11  Score=111.83  Aligned_cols=91  Identities=19%  Similarity=0.180  Sum_probs=77.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++..       .+++++.+|+.+++..  ++||+|++..
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~--~~fD~v~~~~  114 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP--TSIDTIVSTY  114 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC--SCCSEEEEES
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC--CCeEEEEECc
Confidence            67899999999999999999885 589999999999999887541       5789999999988763  8999999999


Q ss_pred             ccccccchHh--Hhhee--eecCCC
Q psy11730        369 TIYSVANYNK--LLTVW--CLFPTH  389 (496)
Q Consensus       369 ~l~~~~~~~~--~~~~~--~l~p~~  389 (496)
                      +++|+++.+.  ++++.  .|.|+|
T Consensus       115 ~l~~~~~~~~~~~l~~~~~~LkpgG  139 (220)
T 3hnr_A          115 AFHHLTDDEKNVAIAKYSQLLNKGG  139 (220)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHSCTTC
T ss_pred             chhcCChHHHHHHHHHHHHhcCCCC
Confidence            9999998876  77653  566665

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.15  E-value=1.9e-11  Score=116.94  Aligned_cols=113  Identities=19%  Similarity=0.242  Sum_probs=85.3

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      |+..+  .+.+.+....+|.+|||||||+|..+..+++.++.+|+|||+|+.|++.|+++...    ...++.++.+|++
T Consensus        45 we~~~--m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~----~~~~~~~~~~~a~  118 (236)
T 3orh_A           45 WETPY--MHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR----QTHKVIPLKGLWE  118 (236)
T ss_dssp             GGHHH--HHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGG----CSSEEEEEESCHH
T ss_pred             HHHHH--HHHHHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhh----CCCceEEEeehHH
Confidence            55432  23333333457899999999999999999888888999999999999999876533    3467889999988


Q ss_pred             Cccc-cCCCceeEEEE-----ccccccccchHhHhhe--eeecCCCC
Q psy11730        352 SLSA-VIHSKFDIILT-----SETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       352 ~~~~-~~~~~fD~Ii~-----~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      ++.. ..+++||.|+.     ...++|..+.+.++++  .+|.|+|.
T Consensus       119 ~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~  165 (236)
T 3orh_A          119 DVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV  165 (236)
T ss_dssp             HHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEE
T ss_pred             hhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCE
Confidence            7543 23678999985     4556677788888876  37788763

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.14  E-value=7.7e-11  Score=113.39  Aligned_cols=99  Identities=17%  Similarity=0.153  Sum_probs=81.8

Q ss_pred             HHHhCCC-CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730        281 FIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH  358 (496)
Q Consensus       281 ~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  358 (496)
                      .+..... .++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.++++        ..++.+..+|+++++  .+
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~--~~   93 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR--------LPNTNFGKADLATWK--PA   93 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH--------STTSEEEECCTTTCC--CS
T ss_pred             HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CCCcEEEECChhhcC--cc
Confidence            3444443 357899999999999999998875 36899999999999998764        347899999999877  36


Q ss_pred             CceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        359 SKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       359 ~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ++||+|++..+++|++++..+++..  .|.|+|
T Consensus        94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG  126 (259)
T 2p35_A           94 QKADLLYANAVFQWVPDHLAVLSQLMDQLESGG  126 (259)
T ss_dssp             SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEE
T ss_pred             CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCe
Confidence            8999999999999999999988763  666765

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.14  E-value=4.4e-11  Score=111.48  Aligned_cols=97  Identities=16%  Similarity=0.164  Sum_probs=75.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||+|||+|.+++.+++.+..+|+|+|+|+.|++.|+++....+   ..+++++++|+.+......+.||+|++++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~D~~~~~~~~~~~fD~V~~~~  130 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSNAMSFLAQKGTPHNIVFVDP  130 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCHHHHHSSCCCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHhhcCCCCCEEEECC
Confidence            678999999999999999888888899999999999999987654332   36899999998874333357899999998


Q ss_pred             ccccccchHhHhhee----eecCCC
Q psy11730        369 TIYSVANYNKLLTVW----CLFPTH  389 (496)
Q Consensus       369 ~l~~~~~~~~~~~~~----~l~p~~  389 (496)
                      +++ ..+...+++.+    .|.|++
T Consensus       131 p~~-~~~~~~~l~~l~~~~~L~pgG  154 (202)
T 2fpo_A          131 PFR-RGLLEETINLLEDNGWLADEA  154 (202)
T ss_dssp             SSS-TTTHHHHHHHHHHTTCEEEEE
T ss_pred             CCC-CCcHHHHHHHHHhcCccCCCc
Confidence            844 55666655542    255554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.13  E-value=3.3e-11  Score=114.90  Aligned_cols=98  Identities=18%  Similarity=0.166  Sum_probs=73.0

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc--cccCCCceeEE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL--SAVIHSKFDII  364 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~fD~I  364 (496)
                      ..++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.|+++....    ..++.++.+|+.++  +.. +++||+|
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~-~~~fD~V  132 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLP-DGHFDGI  132 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSC-TTCEEEE
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhc----CCCeEEEecCHHHhhcccC-CCceEEE
Confidence            3467899999999999999998777779999999999999998765322    26799999999887  332 5899999


Q ss_pred             EE-cccc----ccccchHhHhhe--eeecCCC
Q psy11730        365 LT-SETI----YSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       365 i~-~~~l----~~~~~~~~~~~~--~~l~p~~  389 (496)
                      ++ ..++    .+..+.+.++++  ..|.|+|
T Consensus       133 ~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG  164 (236)
T 1zx0_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGG  164 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEE
T ss_pred             EECCcccchhhhhhhhHHHHHHHHHHhcCCCe
Confidence            99 4443    122233344554  2566665

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.13  E-value=2.9e-11  Score=130.40  Aligned_cols=88  Identities=22%  Similarity=0.275  Sum_probs=74.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-CCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-IHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~Ii~~  367 (496)
                      .+.+|||||||+|.++..||+.|+ .|+|||.|+.+++.|+..+...+   ..+++|.+++++++... .+++||+|+|.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENP---DFAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTST---TSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcC---CCceEEEECCHHHHhhhccCCCccEEEEC
Confidence            456999999999999999999986 69999999999999987664332   34799999999987432 25789999999


Q ss_pred             cccccccchHhHh
Q psy11730        368 ETIYSVANYNKLL  380 (496)
Q Consensus       368 ~~l~~~~~~~~~~  380 (496)
                      .+++|++++..+.
T Consensus       142 e~~ehv~~~~~~~  154 (569)
T 4azs_A          142 SVFHHIVHLHGID  154 (569)
T ss_dssp             SCHHHHHHHHCHH
T ss_pred             cchhcCCCHHHHH
Confidence            9999999887554

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.13  E-value=3.1e-11  Score=115.23  Aligned_cols=95  Identities=19%  Similarity=0.119  Sum_probs=77.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.|++.|+++....+  ...+++++++|+.+++.  .++||+|++++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~--~~~~D~v~~~~  152 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYG--IADKIEFICGDFLLLAS--FLKADVVFLSP  152 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHGG--GCCCSEEEECC
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcC--CCcCeEEEECChHHhcc--cCCCCEEEECC
Confidence            68899999999999999999987 789999999999999987654332  12589999999988763  67999999999


Q ss_pred             ccccccchHhHhhe--eeecCC
Q psy11730        369 TIYSVANYNKLLTV--WCLFPT  388 (496)
Q Consensus       369 ~l~~~~~~~~~~~~--~~l~p~  388 (496)
                      ++++..+....+..  ..|.|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~L~pg  174 (241)
T 3gdh_A          153 PWGGPDYATAETFDIRTMMSPD  174 (241)
T ss_dssp             CCSSGGGGGSSSBCTTTSCSSC
T ss_pred             CcCCcchhhhHHHHHHhhcCCc
Confidence            99998877654443  234444

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.12  E-value=8.5e-11  Score=109.66  Aligned_cols=97  Identities=16%  Similarity=0.122  Sum_probs=78.7

Q ss_pred             HHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC
Q psy11730        280 NFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS  359 (496)
Q Consensus       280 ~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  359 (496)
                      +.+..... ++.+|||||||+|.++..+   +..+|+|+|+|+.|++.++++.        .++.++.+|+.+++.. ++
T Consensus        28 ~~l~~~~~-~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~-~~   94 (211)
T 2gs9_A           28 RALKGLLP-PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--------PEATWVRAWGEALPFP-GE   94 (211)
T ss_dssp             HHHHTTCC-CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--------TTSEEECCCTTSCCSC-SS
T ss_pred             HHHHHhcC-CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcccccCCCC-CC
Confidence            34444433 7889999999999999886   4458999999999999988653        4688999999887643 57


Q ss_pred             ceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        360 KFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       360 ~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +||+|++..+++|++++..++++.  .|.|++
T Consensus        95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG  126 (211)
T 2gs9_A           95 SFDVVLLFTTLEFVEDVERVLLEARRVLRPGG  126 (211)
T ss_dssp             CEEEEEEESCTTTCSCHHHHHHHHHHHEEEEE
T ss_pred             cEEEEEEcChhhhcCCHHHHHHHHHHHcCCCC
Confidence            899999999999999999888763  566665

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.12  E-value=1.2e-10  Score=107.09  Aligned_cols=96  Identities=26%  Similarity=0.360  Sum_probs=78.6

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++....+   ..++++..+|+.+++.  .++||+|++.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~--~~~~D~v~~~  104 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIEN---LDNLHTRVVDLNNLTF--DRQYDFILST  104 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECCGGGCCC--CCCEEEEEEE
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCC---CCCcEEEEcchhhCCC--CCCceEEEEc
Confidence            357899999999999999999885 489999999999999887653322   3479999999988765  6899999999


Q ss_pred             ccccccc--chHhHhhee--eecCCC
Q psy11730        368 ETIYSVA--NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~--~~~~~~~~~--~l~p~~  389 (496)
                      .+++|++  +...+++..  .|.|++
T Consensus       105 ~~l~~~~~~~~~~~l~~~~~~L~~gG  130 (199)
T 2xvm_A          105 VVLMFLEAKTIPGLIANMQRCTKPGG  130 (199)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHTEEEEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCe
Confidence            9999997  777777652  566655

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.12  E-value=4.2e-11  Score=120.23  Aligned_cols=132  Identities=26%  Similarity=0.305  Sum_probs=92.3

Q ss_pred             CCccccceeecccccCCCccccCceeeecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHH
Q psy11730        245 PLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQE  323 (496)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~  323 (496)
                      .||+.+.....+..|+.+..+...|         .+.|.+.. ..++++|||||||+|.+++.+++.+..+|+|+|+| .
T Consensus         2 ~Yf~~y~~~~~~~~ml~d~~r~~~y---------~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~   71 (328)
T 1g6q_1            2 YYFDSYDHYGIHEEMLQDTVRTLSY---------RNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-S   71 (328)
T ss_dssp             CCCCCCCCHHHHHHHHTCHHHHHHH---------HHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-T
T ss_pred             chhhhhcCchHHHHHhcCHHHHHHH---------HHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-H
Confidence            4677777777788888876543211         22222211 13578999999999999999999888899999999 6


Q ss_pred             HHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccc---cchHhHhhe--eeecCCC
Q psy11730        324 VIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSV---ANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       324 ~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~---~~~~~~~~~--~~l~p~~  389 (496)
                      |++.|+++...++  ...+++++.+|+++++.. .++||+|++..+.+++   ..++.++..  ..|.|+|
T Consensus        72 ~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~-~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG  139 (328)
T 1g6q_1           72 IIEMAKELVELNG--FSDKITLLRGKLEDVHLP-FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGG  139 (328)
T ss_dssp             HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCS-SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHcC--CCCCEEEEECchhhccCC-CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCe
Confidence            9988876643322  345799999999987653 4789999998765544   456666653  2445544

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.12  E-value=1.6e-10  Score=115.04  Aligned_cols=110  Identities=13%  Similarity=0.197  Sum_probs=86.2

Q ss_pred             hHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        275 TFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       275 ~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ...+++.+.+...+ ++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++....+  ...++++..+|+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~  152 (318)
T 2fk8_A           75 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDF  152 (318)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChHHC
Confidence            34456666666654 478999999999999999998744589999999999999987653322  235799999998776


Q ss_pred             cccCCCceeEEEEccccccc--cchHhHhhee--eecCCCC
Q psy11730        354 SAVIHSKFDIILTSETIYSV--ANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~--~~~~~~~~~~--~l~p~~~  390 (496)
                      +    ++||+|++..+++|+  +++..++++.  .|.|+|.
T Consensus       153 ~----~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  189 (318)
T 2fk8_A          153 A----EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGR  189 (318)
T ss_dssp             C----CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCE
T ss_pred             C----CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcE
Confidence            3    789999999999999  6778888763  5667653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.12  E-value=9.2e-11  Score=111.27  Aligned_cols=95  Identities=19%  Similarity=0.304  Sum_probs=78.6

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.++++...     ..+++++.+|+.+++..  ++||+|++
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~--~~fD~v~~  115 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG-----NLKVKYIEADYSKYDFE--EKYDMVVS  115 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS-----CTTEEEEESCTTTCCCC--SCEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc-----CCCEEEEeCchhccCCC--CCceEEEE
Confidence            457899999999999999999886 47899999999999998876522     23899999999988763  89999999


Q ss_pred             ccccccccchH--hHhhe--eeecCCC
Q psy11730        367 SETIYSVANYN--KLLTV--WCLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~--~~~~~--~~l~p~~  389 (496)
                      ..+++|+++.+  .++++  ..|.|+|
T Consensus       116 ~~~l~~~~~~~~~~~l~~~~~~LkpgG  142 (234)
T 3dtn_A          116 ALSIHHLEDEDKKELYKRSYSILKESG  142 (234)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             eCccccCCHHHHHHHHHHHHHhcCCCc
Confidence            99999998766  36665  2667765

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.12  E-value=1.1e-10  Score=114.42  Aligned_cols=105  Identities=18%  Similarity=0.300  Sum_probs=84.3

Q ss_pred             HHHHHhCC-C-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        279 LNFIKDNV-A-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       279 ~~~l~~~~-~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      +.++.+.. . .++.+|||||||+|.++..+++..+  .+|+|+|+|+.|++.++++....    ..++++..+|+.+++
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~v~~~~~d~~~~~   85 (284)
T 3gu3_A           10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIE   85 (284)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS----SSEEEEEESCTTTCC
T ss_pred             HHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc----CCceEEEEcchhhcC
Confidence            34444433 3 3578999999999999999988743  68999999999999988765322    238999999999876


Q ss_pred             ccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        355 AVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      .  .++||+|++..+++|++++..+++..  .|.|++
T Consensus        86 ~--~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG  120 (284)
T 3gu3_A           86 L--NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGG  120 (284)
T ss_dssp             C--SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEE
T ss_pred             c--CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCC
Confidence            5  57999999999999999999988763  666665

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.11  E-value=1.3e-10  Score=108.48  Aligned_cols=91  Identities=15%  Similarity=0.144  Sum_probs=75.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++.       ...+++++.+|+.++  ...++||+|++..
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~-------~~~~~~~~~~d~~~~--~~~~~~D~v~~~~  115 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGRH-------GLDNVEFRQQDLFDW--TPDRQWDAVFFAH  115 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGGG-------CCTTEEEEECCTTSC--CCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHhc-------CCCCeEEEecccccC--CCCCceeEEEEec
Confidence            46799999999999999999885 5899999999999999872       246799999999887  2368999999999


Q ss_pred             ccccccch--HhHhhe--eeecCCC
Q psy11730        369 TIYSVANY--NKLLTV--WCLFPTH  389 (496)
Q Consensus       369 ~l~~~~~~--~~~~~~--~~l~p~~  389 (496)
                      +++|+++.  ..+++.  ..|.|++
T Consensus       116 ~l~~~~~~~~~~~l~~~~~~L~pgG  140 (218)
T 3ou2_A          116 WLAHVPDDRFEAFWESVRSAVAPGG  140 (218)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCCe
Confidence            99999885  666655  2566654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.11  E-value=1.1e-10  Score=114.11  Aligned_cols=90  Identities=19%  Similarity=0.197  Sum_probs=77.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||||||+|.++..+++ ...+|+|+|+|+.|++.++++.        .++.+..+|+++++.  .++||+|++..
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~--~~~fD~v~~~~  125 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY--------PHLHFDVADARNFRV--DKPLDAVFSNA  125 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC--------TTSCEEECCTTTCCC--SSCEEEEEEES
T ss_pred             CCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC--------CCCEEEECChhhCCc--CCCcCEEEEcc
Confidence            578999999999999999988 4468999999999999987642        578899999998775  57999999999


Q ss_pred             ccccccchHhHhhee--eecCCC
Q psy11730        369 TIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       369 ~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +++|++++..++++.  .|.|+|
T Consensus       126 ~l~~~~d~~~~l~~~~~~LkpgG  148 (279)
T 3ccf_A          126 MLHWVKEPEAAIASIHQALKSGG  148 (279)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEE
T ss_pred             hhhhCcCHHHHHHHHHHhcCCCc
Confidence            999999999988773  677765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.11  E-value=6.9e-11  Score=116.09  Aligned_cols=100  Identities=21%  Similarity=0.097  Sum_probs=80.0

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.|+++....+  ...++.++.+|+.+.+....++||+|++.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCccEEEEECCccccccCCCCCcCEEEEC
Confidence            4678999999999999999888887799999999999999887653321  23579999999998765336799999999


Q ss_pred             ccccc----ccchHhHhhee--eecCCC
Q psy11730        368 ETIYS----VANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~----~~~~~~~~~~~--~l~p~~  389 (496)
                      .+++|    ..+...+++..  .|.|+|
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG  168 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRPGG  168 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCCCC
Confidence            99977    46667777652  566665

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.11  E-value=1.4e-10  Score=109.66  Aligned_cols=84  Identities=17%  Similarity=0.251  Sum_probs=66.8

Q ss_pred             CCCCeEEEecCc-CCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCG-AGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcG-tG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .++.+|||+||| +|.+++.+++.+..+|+|+|+|+.+++.|+++....+   . +++++.+|+..+.....++||+|++
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~-~v~~~~~d~~~~~~~~~~~fD~I~~  129 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNN---S-NVRLVKSNGGIIKGVVEGTFDVIFS  129 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTT---C-CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhC---C-CcEEEeCCchhhhhcccCceeEEEE
Confidence            368899999999 9999999998866789999999999999987654332   2 8999999976554333589999999


Q ss_pred             ccccccccc
Q psy11730        367 SETIYSVAN  375 (496)
Q Consensus       367 ~~~l~~~~~  375 (496)
                      ++++++..+
T Consensus       130 npp~~~~~~  138 (230)
T 3evz_A          130 APPYYDKPL  138 (230)
T ss_dssp             CCCCC----
T ss_pred             CCCCcCCcc
Confidence            999877654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.11  E-value=1.6e-10  Score=107.00  Aligned_cols=86  Identities=26%  Similarity=0.324  Sum_probs=67.0

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      ++..+......++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.++++..        +++++.+|+.+++   
T Consensus        40 l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~d~~~~~---  108 (200)
T 1ne2_A           40 FLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--------GVNFMVADVSEIS---  108 (200)
T ss_dssp             HHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--------TSEEEECCGGGCC---
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC--------CCEEEECcHHHCC---
Confidence            34444333344688999999999999999998877789999999999999887541        7899999998853   


Q ss_pred             CCceeEEEEccccccccc
Q psy11730        358 HSKFDIILTSETIYSVAN  375 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~  375 (496)
                       ++||+|++++++++...
T Consensus       109 -~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A          109 -GKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             -CCEEEEEECCCC-----
T ss_pred             -CCeeEEEECCCchhccC
Confidence             68999999999999864

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.11  E-value=6.1e-11  Score=110.42  Aligned_cols=99  Identities=17%  Similarity=0.228  Sum_probs=75.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-CCCc-eeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-IHSK-FDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~-fD~Ii~  366 (496)
                      ++.+|||+|||+|.+++.++..+..+|+|+|+|+.|++.|+++....+. ...+++++.+|+.+.... ..++ ||+|++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKC-SSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCC-CccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            6789999999999999998888888999999999999999876543221 015899999998876432 2468 999999


Q ss_pred             ccccccccchHhHhhee----eecCCC
Q psy11730        367 SETIYSVANYNKLLTVW----CLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~----~l~p~~  389 (496)
                      +++++ ..+.+.+++.+    .|.|++
T Consensus       132 ~~~~~-~~~~~~~l~~~~~~~~LkpgG  157 (201)
T 2ift_A          132 DPPFH-FNLAEQAISLLCENNWLKPNA  157 (201)
T ss_dssp             CCCSS-SCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCC-CccHHHHHHHHHhcCccCCCc
Confidence            99954 56666666543    255554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.11  E-value=1.1e-10  Score=108.86  Aligned_cols=107  Identities=18%  Similarity=0.322  Sum_probs=83.2

Q ss_pred             HHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        276 FDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       276 ~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      ..+.+.|.... .++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.++++..     ...++.+..+|+.+++.
T Consensus        30 ~~~~~~l~~~~-~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~-----~~~~i~~~~~d~~~~~~  103 (215)
T 2pxx_A           30 SSFRALLEPEL-RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA-----HVPQLRWETMDVRKLDF  103 (215)
T ss_dssp             HHHHHHHGGGC-CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTT-----TCTTCEEEECCTTSCCS
T ss_pred             HHHHHHHHHhc-CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcc-----cCCCcEEEEcchhcCCC
Confidence            34566666554 4578999999999999999999987799999999999999887652     13589999999988754


Q ss_pred             cCCCceeEEEEcccccccc---------------chHhHhhe--eeecCCC
Q psy11730        356 VIHSKFDIILTSETIYSVA---------------NYNKLLTV--WCLFPTH  389 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~---------------~~~~~~~~--~~l~p~~  389 (496)
                      . +++||+|++..+++++.               +...+++.  ..|.|++
T Consensus       104 ~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  153 (215)
T 2pxx_A          104 P-SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGG  153 (215)
T ss_dssp             C-SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEE
T ss_pred             C-CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCC
Confidence            3 57899999999987664               45566655  2566654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.11  E-value=1.1e-10  Score=109.04  Aligned_cols=89  Identities=19%  Similarity=0.254  Sum_probs=75.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++.         ++.+..+|+.+++  ..++||+|++..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~~--~~~~fD~v~~~~  110 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL---------GRPVRTMLFHQLD--AIDAYDAVWAHA  110 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---------TSCCEECCGGGCC--CCSCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc---------CCceEEeeeccCC--CCCcEEEEEecC
Confidence            478999999999999999998854 8999999999999988653         4667889988877  378999999999


Q ss_pred             cccccc--chHhHhhee--eecCCC
Q psy11730        369 TIYSVA--NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       369 ~l~~~~--~~~~~~~~~--~l~p~~  389 (496)
                      +++|++  +...+++..  .|.|+|
T Consensus       111 ~l~~~~~~~~~~~l~~~~~~LkpgG  135 (211)
T 3e23_A          111 CLLHVPRDELADVLKLIWRALKPGG  135 (211)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             chhhcCHHHHHHHHHHHHHhcCCCc
Confidence            999997  777777663  566655

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.10  E-value=5.8e-11  Score=106.89  Aligned_cols=101  Identities=17%  Similarity=0.187  Sum_probs=78.7

Q ss_pred             cchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC
Q psy11730        273 ECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS  352 (496)
Q Consensus       273 ~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~  352 (496)
                      .....+++.+.   ..++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++        ..++++..+|   
T Consensus         4 ~~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~v~~~~~d---   68 (170)
T 3i9f_A            4 ERPEEYLPNIF---EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK--------FDSVITLSDP---   68 (170)
T ss_dssp             --CTTTHHHHH---SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH--------CTTSEEESSG---
T ss_pred             cCHHHHHHhcC---cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh--------CCCcEEEeCC---
Confidence            33344444443   22567999999999999999998885 999999999999998865        3478889888   


Q ss_pred             ccccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        353 LSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       353 ~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      .+. .+++||+|++..+++|++++..++++.  .|.|++
T Consensus        69 ~~~-~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG  106 (170)
T 3i9f_A           69 KEI-PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDG  106 (170)
T ss_dssp             GGS-CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEE
T ss_pred             CCC-CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCC
Confidence            222 267999999999999999999888763  566655

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.10  E-value=1.4e-10  Score=104.90  Aligned_cols=88  Identities=17%  Similarity=0.208  Sum_probs=70.6

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      .+.+..+++.+... ..++.+|||||||+|.++..+++.+  +|+|+|+|+.|++.            ..+++++.+|+.
T Consensus         7 ~~~~~~l~~~l~~~-~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------------~~~~~~~~~d~~   71 (170)
T 3q87_B            7 GEDTYTLMDALERE-GLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------------HRGGNLVRADLL   71 (170)
T ss_dssp             CHHHHHHHHHHHHH-TCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------------CSSSCEEECSTT
T ss_pred             CccHHHHHHHHHhh-cCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------------ccCCeEEECChh
Confidence            45566777775442 3467899999999999999999888  99999999999986            236789999998


Q ss_pred             CccccCCCceeEEEEccccccccch
Q psy11730        352 SLSAVIHSKFDIILTSETIYSVANY  376 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~~~~  376 (496)
                      +...  +++||+|++++++++.++.
T Consensus        72 ~~~~--~~~fD~i~~n~~~~~~~~~   94 (170)
T 3q87_B           72 CSIN--QESVDVVVFNPPYVPDTDD   94 (170)
T ss_dssp             TTBC--GGGCSEEEECCCCBTTCCC
T ss_pred             hhcc--cCCCCEEEECCCCccCCcc
Confidence            7322  4899999999999876544

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.10  E-value=7.2e-11  Score=112.24  Aligned_cols=107  Identities=14%  Similarity=0.086  Sum_probs=82.6

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .+..++.. ..+++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++....  ....+++|+.+|+.+++. 
T Consensus        55 ~l~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~-  129 (235)
T 3lcc_A           55 LIVHLVDT-SSLPLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSS--PKAEYFSFVKEDVFTWRP-  129 (235)
T ss_dssp             HHHHHHHT-TCSCCEEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTS--GGGGGEEEECCCTTTCCC-
T ss_pred             HHHHHHHh-cCCCCCCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhcc--CCCcceEEEECchhcCCC-
Confidence            34444443 34455699999999999999987654 57999999999999998765321  124579999999998764 


Q ss_pred             CCCceeEEEEcccccccc--chHhHhhee--eecCCC
Q psy11730        357 IHSKFDIILTSETIYSVA--NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~--~~~~~~~~~--~l~p~~  389 (496)
                       ..+||+|++..++++++  +...+++..  .|.|++
T Consensus       130 -~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG  165 (235)
T 3lcc_A          130 -TELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDG  165 (235)
T ss_dssp             -SSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEE
T ss_pred             -CCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCc
Confidence             56999999999999997  777777663  566665

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=99.10  E-value=2.4e-11  Score=125.94  Aligned_cols=46  Identities=13%  Similarity=0.207  Sum_probs=37.2

Q ss_pred             CCCCCHHHHHHHhcCCCCcEEEecCCCC-CcCC-CCCCHHHHHhhcCCe
Q psy11730         60 VKDYSPQEFIEKYEKPNKPVVIKGVTEN-WNAT-YKWTLEKLGKKYRNQ  106 (496)
Q Consensus        60 ~~~ls~eeF~~~y~~~~~PvVi~g~~~~-WpA~-~~Wt~~~L~~~~g~~  106 (496)
                      ...+|+++|.++|.. .+|+||++...+ |+++ ..|+.++|.+..++.
T Consensus        23 l~~is~e~F~~~yw~-kkPllIr~~~~~~~~~f~~l~s~~~L~~La~~~   70 (442)
T 2xdv_A           23 ISPIKTETFFKEFWE-QKPLLIQRDDPALATYYGSLFKLTDLKSLCSRG   70 (442)
T ss_dssp             TTTSCHHHHHHHTTT-TSCEEECCCCHHHHHHHHHHCCHHHHSSCC---
T ss_pred             hcCCCHHHHHHHhhh-hCcEEeecCCcchhhhhcCcCCHHHHHHHHccC
Confidence            468999999999997 799999998765 8887 468999999887654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.10  E-value=1.3e-10  Score=119.21  Aligned_cols=100  Identities=19%  Similarity=0.143  Sum_probs=81.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccc-----cCCCCceEEEecccCCc------cc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMN-----TDNLEKCKFYHGDWGSL------SA  355 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~-----~~~~~~v~~~~~d~~~~------~~  355 (496)
                      ++.+|||||||+|.++..+++..  ..+|+|+|+|+.|++.++++.....     .....+++|+.+|++++      +.
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            57899999999999999998864  3699999999999999987653221     02236899999999987      33


Q ss_pred             cCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        356 VIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      . +++||+|+++.+++|++++..++++.  .|.|+|
T Consensus       163 ~-~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG  197 (383)
T 4fsd_A          163 P-DSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGG  197 (383)
T ss_dssp             C-TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEE
T ss_pred             C-CCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCC
Confidence            2 67999999999999999999998873  677765

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.09  E-value=1.2e-10  Score=112.80  Aligned_cols=101  Identities=18%  Similarity=0.102  Sum_probs=71.4

Q ss_pred             HHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc--
Q psy11730        279 LNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA--  355 (496)
Q Consensus       279 ~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~--  355 (496)
                      ++.+.+... .++.+|||||||+|.+++.+++.+ .+|+|+|+|+.|++.|+++....         ++..++.++..  
T Consensus        34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~~~  103 (261)
T 3iv6_A           34 RENDIFLENIVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADR---------CVTIDLLDITAEI  103 (261)
T ss_dssp             HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSS---------CCEEEECCTTSCC
T ss_pred             HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhc---------cceeeeeeccccc
Confidence            344444444 357899999999999999999886 48999999999999998765221         23344443332  


Q ss_pred             --cCCCceeEEEEcccccccc--chHhHhhee--eecCCCC
Q psy11730        356 --VIHSKFDIILTSETIYSVA--NYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       356 --~~~~~fD~Ii~~~~l~~~~--~~~~~~~~~--~l~p~~~  390 (496)
                        ...++||+|+++.+++|+.  +...++...  .+ |+|.
T Consensus       104 ~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~  143 (261)
T 3iv6_A          104 PKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGT  143 (261)
T ss_dssp             CGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSE
T ss_pred             ccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcE
Confidence              2257899999999999874  444455542  45 7663

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.09  E-value=1.3e-10  Score=114.60  Aligned_cols=102  Identities=18%  Similarity=0.196  Sum_probs=77.1

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccC----------------------------
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTD----------------------------  338 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~----------------------------  338 (496)
                      +++++|||||||+|.+++.+++.. ..+|+|+|+|+.|++.|+++.......                            
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            368899999999999999999874 579999999999999998775332100                            


Q ss_pred             ---------------------------CCCceEEEecccCCcc----ccCCCceeEEEEcccccccc------chHhHhh
Q psy11730        339 ---------------------------NLEKCKFYHGDWGSLS----AVIHSKFDIILTSETIYSVA------NYNKLLT  381 (496)
Q Consensus       339 ---------------------------~~~~v~~~~~d~~~~~----~~~~~~fD~Ii~~~~l~~~~------~~~~~~~  381 (496)
                                                 ...+++|.++|+....    ....++||+|+|..+++|+.      +...+++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                       1158999999987544    11268999999999997775      6666776


Q ss_pred             ee--eecCCC
Q psy11730        382 VW--CLFPTH  389 (496)
Q Consensus       382 ~~--~l~p~~  389 (496)
                      .+  .|.|+|
T Consensus       205 ~~~~~LkpGG  214 (292)
T 3g07_A          205 RIYRHLRPGG  214 (292)
T ss_dssp             HHHHHEEEEE
T ss_pred             HHHHHhCCCc
Confidence            63  666765

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.09  E-value=1.3e-10  Score=113.84  Aligned_cols=94  Identities=21%  Similarity=0.239  Sum_probs=77.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++....+   . +++++.+|+.+.+.  .++||+|+++.
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~---~-~~~~~~~d~~~~~~--~~~fD~i~~~~  192 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKEN---L-NISTALYDINAANI--QENYDFIVSTV  192 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---C-CEEEEECCGGGCCC--CSCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcC---C-ceEEEEeccccccc--cCCccEEEEcc
Confidence            688999999999999999999865 89999999999999887654332   2 89999999998766  68999999999


Q ss_pred             ccccccc--hHhHhhee--eecCCC
Q psy11730        369 TIYSVAN--YNKLLTVW--CLFPTH  389 (496)
Q Consensus       369 ~l~~~~~--~~~~~~~~--~l~p~~  389 (496)
                      +++|++.  ...+++..  .|.|+|
T Consensus       193 ~~~~~~~~~~~~~l~~~~~~LkpgG  217 (286)
T 3m70_A          193 VFMFLNRERVPSIIKNMKEHTNVGG  217 (286)
T ss_dssp             SGGGSCGGGHHHHHHHHHHTEEEEE
T ss_pred             chhhCCHHHHHHHHHHHHHhcCCCc
Confidence            9999954  44666652  566655

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.08  E-value=1.6e-10  Score=111.71  Aligned_cols=101  Identities=20%  Similarity=0.277  Sum_probs=79.1

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .+++.+.... .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++.        .++.++.+|+.+++. 
T Consensus        39 ~~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-  107 (263)
T 3pfg_A           39 DLAALVRRHS-PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRN--------PDAVLHHGDMRDFSL-  107 (263)
T ss_dssp             HHHHHHHHHC-TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTCCC-
T ss_pred             HHHHHHHhhC-CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC--------CCCEEEECChHHCCc-
Confidence            3455555443 2568999999999999999988864 7999999999999988753        378999999998776 


Q ss_pred             CCCceeEEEEcc-cccccc---chHhHhhee--eecCCC
Q psy11730        357 IHSKFDIILTSE-TIYSVA---NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       357 ~~~~fD~Ii~~~-~l~~~~---~~~~~~~~~--~l~p~~  389 (496)
                       .++||+|++.. +++|+.   +...+++..  .|.|+|
T Consensus       108 -~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG  145 (263)
T 3pfg_A          108 -GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDG  145 (263)
T ss_dssp             -SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEE
T ss_pred             -cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCc
Confidence             68999999998 999995   444555542  555654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.07  E-value=1.4e-10  Score=110.61  Aligned_cols=90  Identities=18%  Similarity=0.151  Sum_probs=73.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc-ccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS-AVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++           +.++.+|+.+.. ...+++||+|++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~-----------~~~~~~d~~~~~~~~~~~~fD~i~~~  108 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK-----------FNVVKSDAIEYLKSLPDKYLDGVMIS  108 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT-----------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred             CCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh-----------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence            468999999999999999988865 699999999999998864           677888887752 2236899999999


Q ss_pred             ccccccc--chHhHhhee--eecCCCC
Q psy11730        368 ETIYSVA--NYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       368 ~~l~~~~--~~~~~~~~~--~l~p~~~  390 (496)
                      .+++|++  +...++++.  .|.|+|.
T Consensus       109 ~~l~~~~~~~~~~~l~~~~~~LkpgG~  135 (240)
T 3dli_A          109 HFVEHLDPERLFELLSLCYSKMKYSSY  135 (240)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHBCTTCC
T ss_pred             CchhhCCcHHHHHHHHHHHHHcCCCcE
Confidence            9999998  447888763  6777664

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.06  E-value=2.9e-10  Score=107.40  Aligned_cols=99  Identities=25%  Similarity=0.299  Sum_probs=79.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccccc--CCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT--DNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++....+.  ....++.+..+|+.+++.. .++||+|++
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~  107 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFH-DSSFDFAVM  107 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSC-TTCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCC-CCceeEEEE
Confidence            578999999999999999998854 899999999999998876533221  1134789999999987654 689999999


Q ss_pred             ccccccccchH---hHhhee--eecCCC
Q psy11730        367 SETIYSVANYN---KLLTVW--CLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~---~~~~~~--~l~p~~  389 (496)
                      ..+++|+++++   .+++..  .|.|++
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG  135 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGA  135 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEE
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCe
Confidence            99999999887   666652  566655

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.06  E-value=3.6e-10  Score=104.27  Aligned_cols=81  Identities=14%  Similarity=0.131  Sum_probs=66.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|.++..+++..  ..+|+|+|+|+.+++.|+++....+  ...+++++.+|+.++.....++||+|+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT--CGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHhhhccCCceEEE
Confidence            457899999999999999998873  3699999999999999987754322  236899999999888654468999999


Q ss_pred             Ecccc
Q psy11730        366 TSETI  370 (496)
Q Consensus       366 ~~~~l  370 (496)
                      ++.++
T Consensus        99 ~~~~~  103 (197)
T 3eey_A           99 FNLGY  103 (197)
T ss_dssp             EEESB
T ss_pred             EcCCc
Confidence            98766

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.06  E-value=5.7e-11  Score=115.35  Aligned_cols=104  Identities=14%  Similarity=0.117  Sum_probs=75.0

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccC--------------------------CC
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD--------------------------NL  340 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~--------------------------~~  340 (496)
                      ..++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++.......                          ..
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            4567899999999999998878888889999999999999887643211000                          01


Q ss_pred             CceE-EEecccCCccc-c--CCCceeEEEEccccccc----cchHhHhhe--eeecCCCC
Q psy11730        341 EKCK-FYHGDWGSLSA-V--IHSKFDIILTSETIYSV----ANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       341 ~~v~-~~~~d~~~~~~-~--~~~~fD~Ii~~~~l~~~----~~~~~~~~~--~~l~p~~~  390 (496)
                      .++. ++.+|+.+... .  ..++||+|+++.+++|+    +++..++++  ..|.|+|.
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~  192 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGH  192 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcE
Confidence            1343 88899887422 1  24689999999999986    455566665  36777763

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.06  E-value=5.6e-10  Score=103.81  Aligned_cols=89  Identities=25%  Similarity=0.309  Sum_probs=71.5

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      ++..+......++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++....+   . +++++.+|+.+++   
T Consensus        38 l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~d~~~~~---  110 (207)
T 1wy7_A           38 LLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK---G-KFKVFIGDVSEFN---  110 (207)
T ss_dssp             HHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT---T-SEEEEESCGGGCC---
T ss_pred             HHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC---C-CEEEEECchHHcC---
Confidence            33333333345688999999999999999999887899999999999999987654332   2 7999999998863   


Q ss_pred             CCceeEEEEcccccccc
Q psy11730        358 HSKFDIILTSETIYSVA  374 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~  374 (496)
                       ..||+|+++++++...
T Consensus       111 -~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A          111 -SRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             -CCCSEEEECCCCSSSS
T ss_pred             -CCCCEEEEcCCCcccc
Confidence             5899999999987764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.06  E-value=9.5e-11  Score=115.14  Aligned_cols=99  Identities=17%  Similarity=0.260  Sum_probs=79.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccccc-CCCCceEEEecccCCcc---ccCCCceeEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT-DNLEKCKFYHGDWGSLS---AVIHSKFDII  364 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~-~~~~~v~~~~~d~~~~~---~~~~~~fD~I  364 (496)
                      ++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++...... ....++.+..+|+.+++   .. .++||+|
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~fD~V  134 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDAV  134 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccccc-CCCeEEE
Confidence            578999999999999999999876 899999999999999765322111 12357888999988876   32 6899999


Q ss_pred             EEc-cccccccc-------hHhHhhee--eecCCC
Q psy11730        365 LTS-ETIYSVAN-------YNKLLTVW--CLFPTH  389 (496)
Q Consensus       365 i~~-~~l~~~~~-------~~~~~~~~--~l~p~~  389 (496)
                      ++. .+++|+.+       ...+++..  .|.|+|
T Consensus       135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG  169 (293)
T 3thr_A          135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG  169 (293)
T ss_dssp             EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEE
T ss_pred             EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCe
Confidence            998 89999999       88888763  667765

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.05  E-value=3e-10  Score=105.56  Aligned_cols=108  Identities=21%  Similarity=0.192  Sum_probs=81.5

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      .+....+++.+.... .++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.|+++....+   ..++++..+|+.
T Consensus        44 ~~~~~~~~~~l~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~  119 (205)
T 3grz_A           44 HQTTQLAMLGIERAM-VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNG---IYDIALQKTSLL  119 (205)
T ss_dssp             HHHHHHHHHHHHHHC-SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCCCEEEESSTT
T ss_pred             CccHHHHHHHHHHhc-cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEecccc
Confidence            444555666666543 3578999999999999999998877899999999999999987654332   334999999987


Q ss_pred             CccccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        352 SLSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +..   .++||+|+++.+++++   ..+++..  .|.|++
T Consensus       120 ~~~---~~~fD~i~~~~~~~~~---~~~l~~~~~~L~~gG  153 (205)
T 3grz_A          120 ADV---DGKFDLIVANILAEIL---LDLIPQLDSHLNEDG  153 (205)
T ss_dssp             TTC---CSCEEEEEEESCHHHH---HHHGGGSGGGEEEEE
T ss_pred             ccC---CCCceEEEECCcHHHH---HHHHHHHHHhcCCCC
Confidence            754   5899999999888764   4444432  455554

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.05  E-value=1.4e-10  Score=107.85  Aligned_cols=96  Identities=16%  Similarity=0.130  Sum_probs=74.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||+|||+|.++..++.....+|+|+|+|+.|++.++++....    ..++++..+|+.+++.. +++||+|++..
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~-~~~fD~v~~~~   97 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN----NFKLNISKGDIRKLPFK-DESMSFVYSYG   97 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH----TCCCCEEECCTTSCCSC-TTCEEEEEECS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc----CCceEEEECchhhCCCC-CCceeEEEEcC
Confidence            47899999999999865544444468999999999999988764332    24688999999887643 57899999999


Q ss_pred             ccccc--cchHhHhhee--eecCCC
Q psy11730        369 TIYSV--ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       369 ~l~~~--~~~~~~~~~~--~l~p~~  389 (496)
                      +++|+  .+...+++..  .|.|+|
T Consensus        98 ~l~~~~~~~~~~~l~~~~~~LkpgG  122 (209)
T 2p8j_A           98 TIFHMRKNDVKEAIDEIKRVLKPGG  122 (209)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             hHHhCCHHHHHHHHHHHHHHcCCCc
Confidence            99999  6777777652  566655

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.05  E-value=1.8e-10  Score=110.18  Aligned_cols=95  Identities=14%  Similarity=0.016  Sum_probs=77.8

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC----CCceeE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI----HSKFDI  363 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~fD~  363 (496)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.      ...+++++.+|+.+++...    ...||+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~d~  127 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKEN------TAANISYRLLDGLVPEQAAQIHSEIGDAN  127 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHS------CCTTEEEEECCTTCHHHHHHHHHHHCSCE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhC------cccCceEEECcccccccccccccccCccE
Confidence            3577999999999999999999887 8999999999999988764      2348999999998865421    124999


Q ss_pred             EEEcccccccc--chHhHhhee--eecCCC
Q psy11730        364 ILTSETIYSVA--NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       364 Ii~~~~l~~~~--~~~~~~~~~--~l~p~~  389 (496)
                      |++..+++|++  +...+++..  .|.|++
T Consensus       128 v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  157 (245)
T 3ggd_A          128 IYMRTGFHHIPVEKRELLGQSLRILLGKQG  157 (245)
T ss_dssp             EEEESSSTTSCGGGHHHHHHHHHHHHTTTC
T ss_pred             EEEcchhhcCCHHHHHHHHHHHHHHcCCCC
Confidence            99999999998  777887763  566665

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.04  E-value=9.5e-11  Score=113.04  Aligned_cols=104  Identities=15%  Similarity=0.134  Sum_probs=78.5

Q ss_pred             CCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccC--------------C------------
Q psy11730        286 VAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD--------------N------------  339 (496)
Q Consensus       286 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~--------------~------------  339 (496)
                      ...++.+|||||||+|.++..++..+..+|+|+|+|+.|++.++++....+..              .            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            34567899999999999999988887778999999999999987654221100              0            


Q ss_pred             CCce-EEEecccCCccccCC---CceeEEEEccccc----cccchHhHhhee--eecCCC
Q psy11730        340 LEKC-KFYHGDWGSLSAVIH---SKFDIILTSETIY----SVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       340 ~~~v-~~~~~d~~~~~~~~~---~~fD~Ii~~~~l~----~~~~~~~~~~~~--~l~p~~  389 (496)
                      ..++ .+..+|+.+......   ++||+|++..+++    +..++..+++..  .|.|+|
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG  192 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGG  192 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEE
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCc
Confidence            0127 899999987654224   7899999999999    666777777662  566665

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.04  E-value=8.4e-11  Score=109.42  Aligned_cols=99  Identities=12%  Similarity=0.071  Sum_probs=60.2

Q ss_pred             cchHHHHHHHHhCCC--CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        273 ECTFDLLNFIKDNVA--VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       273 ~~~~~l~~~l~~~~~--~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      +.+..+++.+.+...  .++.+|||+|||+|.++..+++.++ .+|+|+|+|+.|++.++++....+   . +++++++|
T Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~d   87 (215)
T 4dzr_A           12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG---A-VVDWAAAD   87 (215)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHH
T ss_pred             ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC---C-ceEEEEcc
Confidence            445566666665543  4578999999999999999999875 589999999999999987654332   2 78889999


Q ss_pred             cCCcccc---CCCceeEEEEccccccccc
Q psy11730        350 WGSLSAV---IHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       350 ~~~~~~~---~~~~fD~Ii~~~~l~~~~~  375 (496)
                      +.+....   ..++||+|+++++++...+
T Consensus        88 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~  116 (215)
T 4dzr_A           88 GIEWLIERAERGRPWHAIVSNPPYIPTGE  116 (215)
T ss_dssp             HHHHHHHHHHTTCCBSEEEECCCCCC---
T ss_pred             hHhhhhhhhhccCcccEEEECCCCCCCcc
Confidence            8773221   1289999999999876544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.04  E-value=2.5e-10  Score=104.02  Aligned_cols=107  Identities=16%  Similarity=0.107  Sum_probs=78.0

Q ss_pred             ecchHHHHHHHHhCCC--CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        272 WECTFDLLNFIKDNVA--VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~--~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      .+....+.+.+.+...  .++.+|||+|||+|.+++.+++.+..+|+|+|+|+.|++.|+++....+  ...+++++.+|
T Consensus        25 rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d  102 (187)
T 2fhp_A           25 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMD  102 (187)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESC
T ss_pred             CcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC--CCcceEEEECc
Confidence            3444455555554432  4688999999999999999888877899999999999999987654332  23579999999


Q ss_pred             cCCcccc---CCCceeEEEEccccccccchHhHhh
Q psy11730        350 WGSLSAV---IHSKFDIILTSETIYSVANYNKLLT  381 (496)
Q Consensus       350 ~~~~~~~---~~~~fD~Ii~~~~l~~~~~~~~~~~  381 (496)
                      +.+....   ..++||+|+++++++ ..+.+..++
T Consensus       103 ~~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~  136 (187)
T 2fhp_A          103 ANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLE  136 (187)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCEEEECCCCC-chhHHHHHH
Confidence            8874321   147899999998854 444444444

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.04  E-value=1.8e-10  Score=104.44  Aligned_cols=95  Identities=13%  Similarity=0.158  Sum_probs=70.4

Q ss_pred             hHHHHHHHHhCC--CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC
Q psy11730        275 TFDLLNFIKDNV--AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS  352 (496)
Q Consensus       275 ~~~l~~~l~~~~--~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~  352 (496)
                      ...+.+.+.+..  ..++.+|||+|||+|.+++.+++.+..+|+|+|+|+.|++.++++....+  ...+++++.+|+.+
T Consensus        15 ~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~   92 (177)
T 2esr_A           15 SDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAER   92 (177)
T ss_dssp             ---CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcHHH
Confidence            333444444333  24678999999999999999998877899999999999999987653322  22479999999887


Q ss_pred             ccccCCCceeEEEEccccc
Q psy11730        353 LSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       353 ~~~~~~~~fD~Ii~~~~l~  371 (496)
                      ......+.||+|+++++++
T Consensus        93 ~~~~~~~~fD~i~~~~~~~  111 (177)
T 2esr_A           93 AIDCLTGRFDLVFLDPPYA  111 (177)
T ss_dssp             HHHHBCSCEEEEEECCSSH
T ss_pred             hHHhhcCCCCEEEECCCCC
Confidence            4332356799999998864

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.04  E-value=5.3e-11  Score=106.86  Aligned_cols=87  Identities=14%  Similarity=0.123  Sum_probs=68.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC---CCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI---HSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~fD~Ii  365 (496)
                      ++.+|||+|||+|.++..+++.+.. |+|+|+|+.|++.++++....+   . +++++++|+.+.....   .++||+|+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~d~~~~~~~~~~~~~~~D~i~  115 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTG---L-GARVVALPVEVFLPEAKAQGERFTVAF  115 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHT---C-CCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcC---C-ceEEEeccHHHHHHhhhccCCceEEEE
Confidence            6789999999999999999998876 9999999999999987654332   2 7999999988743211   24799999


Q ss_pred             EccccccccchHhHhhe
Q psy11730        366 TSETIYSVANYNKLLTV  382 (496)
Q Consensus       366 ~~~~l~~~~~~~~~~~~  382 (496)
                      ++++++  .+.+.+++.
T Consensus       116 ~~~~~~--~~~~~~~~~  130 (171)
T 1ws6_A          116 MAPPYA--MDLAALFGE  130 (171)
T ss_dssp             ECCCTT--SCTTHHHHH
T ss_pred             ECCCCc--hhHHHHHHH
Confidence            998876  444454443

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.03  E-value=1.4e-10  Score=115.05  Aligned_cols=102  Identities=17%  Similarity=0.088  Sum_probs=72.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCC---CCceEEEeccc------CCccc-cCC
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDN---LEKCKFYHGDW------GSLSA-VIH  358 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~---~~~v~~~~~d~------~~~~~-~~~  358 (496)
                      .+.+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++....+...   .-+++|...|+      +++.. ..+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            478999999999987777777777899999999999999998754322100   01367778777      33321 125


Q ss_pred             CceeEEEEccccccc---cchHhHhhe--eeecCCCC
Q psy11730        359 SKFDIILTSETIYSV---ANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       359 ~~fD~Ii~~~~l~~~---~~~~~~~~~--~~l~p~~~  390 (496)
                      ++||+|+|..++|++   .+...++++  ..|.|+|.
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~  164 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGK  164 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEE
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCE
Confidence            799999999999875   345666665  36777763

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.03  E-value=2.9e-10  Score=110.51  Aligned_cols=100  Identities=14%  Similarity=0.145  Sum_probs=76.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-C-CeEEEEeCCHH------HHHHhcCcccccccCCCCceEEEecc-c--CCcccc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-A-AHVSFQDYNQE------VIESLTLPNILMNTDNLEKCKFYHGD-W--GSLSAV  356 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~-~~v~giD~s~~------~i~~a~~~~~~~~~~~~~~v~~~~~d-~--~~~~~~  356 (496)
                      .++.+|||||||+|.++..+++.+ + .+|+|+|+|+.      |++.++++....+  ...++++..+| +  ..++..
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~  119 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP--LGDRLTVHFNTNLSDDLGPIA  119 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST--TGGGEEEECSCCTTTCCGGGT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC--CCCceEEEECChhhhccCCCC
Confidence            457899999999999999999874 5 79999999997      8888877643221  23589999998 3  333322


Q ss_pred             CCCceeEEEEccccccccchHhHhhee-eecCCCC
Q psy11730        357 IHSKFDIILTSETIYSVANYNKLLTVW-CLFPTHT  390 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~~~~~~~~~-~l~p~~~  390 (496)
                       +++||+|++..+++|+++...+++.. .+.++++
T Consensus       120 -~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG  153 (275)
T 3bkx_A          120 -DQHFDRVVLAHSLWYFASANALALLFKNMAAVCD  153 (275)
T ss_dssp             -TCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCS
T ss_pred             -CCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCC
Confidence             57899999999999999988866552 5556444

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.03  E-value=7.7e-10  Score=102.76  Aligned_cols=95  Identities=8%  Similarity=-0.031  Sum_probs=74.8

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.++++....+   ..+++++.+|+.+.... ...||+|++
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~~~D~i~~  114 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV---ARNVTLVEAFAPEGLDD-LPDPDRVFI  114 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT---CTTEEEEECCTTTTCTT-SCCCSEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeCChhhhhhc-CCCCCEEEE
Confidence            3578999999999999999999875 799999999999999987654332   36899999998765433 367999999


Q ss_pred             ccccccccchHhHhhee--eecCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ..+++   +...+++..  .|.|++
T Consensus       115 ~~~~~---~~~~~l~~~~~~LkpgG  136 (204)
T 3e05_A          115 GGSGG---MLEEIIDAVDRRLKSEG  136 (204)
T ss_dssp             SCCTT---CHHHHHHHHHHHCCTTC
T ss_pred             CCCCc---CHHHHHHHHHHhcCCCe
Confidence            98876   555666552  456655

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.03  E-value=1.4e-10  Score=105.95  Aligned_cols=87  Identities=18%  Similarity=0.205  Sum_probs=67.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ...+|||||||+|.+++.++...+ .+|+|+|+|+.|++.++++....+  ...++.+  .|.....  +.+.||+|++.
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g--~~~~v~~--~d~~~~~--~~~~~DvVLa~  122 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK--TTIKYRF--LNKESDV--YKGTYDVVFLL  122 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC--CSSEEEE--ECCHHHH--TTSEEEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCccEEE--ecccccC--CCCCcChhhHh
Confidence            477999999999999999987744 599999999999999998764433  1225666  5554432  26889999999


Q ss_pred             cccccccchHhHhh
Q psy11730        368 ETIYSVANYNKLLT  381 (496)
Q Consensus       368 ~~l~~~~~~~~~~~  381 (496)
                      .++|++++.+..+.
T Consensus       123 k~LHlL~~~~~al~  136 (200)
T 3fzg_A          123 KMLPVLKQQDVNIL  136 (200)
T ss_dssp             TCHHHHHHTTCCHH
T ss_pred             hHHHhhhhhHHHHH
Confidence            99999966555443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.02  E-value=5e-10  Score=102.24  Aligned_cols=105  Identities=21%  Similarity=0.308  Sum_probs=78.8

Q ss_pred             HHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCc--eEEEecccCCccc
Q psy11730        279 LNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEK--CKFYHGDWGSLSA  355 (496)
Q Consensus       279 ~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~--v~~~~~d~~~~~~  355 (496)
                      .+.+.+... .++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.++++....+   ..+  +++..+|+.+...
T Consensus        41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~~~~d~~~~~~  116 (194)
T 1dus_A           41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYENVK  116 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTT---CTTSCEEEEECSTTTTCT
T ss_pred             HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcC---CCccceEEEECchhcccc
Confidence            333443333 35789999999999999998888 6799999999999999887653322   344  9999999887443


Q ss_pred             cCCCceeEEEEcccccc-ccchHhHhhee--eecCCC
Q psy11730        356 VIHSKFDIILTSETIYS-VANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~-~~~~~~~~~~~--~l~p~~  389 (496)
                        .+.||+|+++.++++ ..+...+++..  .|.|++
T Consensus       117 --~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG  151 (194)
T 1dus_A          117 --DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNG  151 (194)
T ss_dssp             --TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEE
T ss_pred             --cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCC
Confidence              578999999999887 45666666652  555654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.02  E-value=4.3e-10  Score=106.65  Aligned_cols=101  Identities=14%  Similarity=0.227  Sum_probs=78.1

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .+.+++.... .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.        .++.+..+|+.+++. 
T Consensus        29 ~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-   97 (239)
T 3bxo_A           29 DIADLVRSRT-PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL--------PDATLHQGDMRDFRL-   97 (239)
T ss_dssp             HHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC--------TTCEEEECCTTTCCC-
T ss_pred             HHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC--------CCCEEEECCHHHccc-
Confidence            3455555544 4678999999999999999998876 8999999999999988643        468999999988765 


Q ss_pred             CCCceeEEEE-cccccccc---chHhHhhee--eecCCC
Q psy11730        357 IHSKFDIILT-SETIYSVA---NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       357 ~~~~fD~Ii~-~~~l~~~~---~~~~~~~~~--~l~p~~  389 (496)
                       .++||+|+| ..+++|+.   +...+++..  .|.|++
T Consensus        98 -~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG  135 (239)
T 3bxo_A           98 -GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGG  135 (239)
T ss_dssp             -SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEE
T ss_pred             -CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCe
Confidence             678999996 55999984   445555542  455554

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.02  E-value=3e-10  Score=116.24  Aligned_cols=112  Identities=24%  Similarity=0.218  Sum_probs=86.7

Q ss_pred             ecchHHHHHHHHhCC---CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEec
Q psy11730        272 WECTFDLLNFIKDNV---AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHG  348 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~---~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~  348 (496)
                      .+.+..+++.+.+..   ..++.+|||||||+|.+++.+++.+. +|+|+|+|+.+++.++++...++    .+++++.+
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~----~~v~~~~~  287 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANA----LKAQALHS  287 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTT----CCCEEEEC
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcC----CCeEEEEc
Confidence            344556777776543   35688999999999999999998864 89999999999999987754332    24899999


Q ss_pred             ccCCccccCCCceeEEEEcccccc-----ccchHhHhhe--eeecCCC
Q psy11730        349 DWGSLSAVIHSKFDIILTSETIYS-----VANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       349 d~~~~~~~~~~~fD~Ii~~~~l~~-----~~~~~~~~~~--~~l~p~~  389 (496)
                      |+.+.... .++||+|++++++++     ..+...+++.  ..|.|++
T Consensus       288 D~~~~~~~-~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG  334 (381)
T 3dmg_A          288 DVDEALTE-EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGG  334 (381)
T ss_dssp             STTTTSCT-TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEE
T ss_pred             chhhcccc-CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCc
Confidence            99887653 479999999999998     5566677665  2566665

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.01  E-value=5.2e-10  Score=108.11  Aligned_cols=100  Identities=21%  Similarity=0.337  Sum_probs=78.0

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      +.+++..... ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++..       .  .+..+|+.+++.. 
T Consensus        44 ~~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~-------~--~~~~~d~~~~~~~-  111 (260)
T 2avn_A           44 IGSFLEEYLK-NPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGV-------K--NVVEAKAEDLPFP-  111 (260)
T ss_dssp             HHHHHHHHCC-SCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTC-------S--CEEECCTTSCCSC-
T ss_pred             HHHHHHHhcC-CCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcC-------C--CEEECcHHHCCCC-
Confidence            4455555444 77899999999999999998875 489999999999999886542       1  2788998887643 


Q ss_pred             CCceeEEEEccccccc-cchHhHhhee--eecCCC
Q psy11730        358 HSKFDIILTSETIYSV-ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~-~~~~~~~~~~--~l~p~~  389 (496)
                      +++||+|++..+++|+ +++..++++.  .|.|+|
T Consensus       112 ~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG  146 (260)
T 2avn_A          112 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDG  146 (260)
T ss_dssp             TTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEE
T ss_pred             CCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCe
Confidence            6789999998877666 7788887763  566665

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.01  E-value=4.2e-10  Score=107.05  Aligned_cols=95  Identities=19%  Similarity=0.133  Sum_probs=76.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++....+    .++.+..+|+.+++.  .++||+|++.
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~--~~~fD~v~~~  108 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISNLNI--NRKFDLITCC  108 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGGCCC--SCCEEEEEEC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcC----CCeEEEecccccCCc--cCCceEEEEc
Confidence            367899999999999999988886 579999999999999987653321    278999999988765  3789999999


Q ss_pred             c-ccccc---cchHhHhhee--eecCCC
Q psy11730        368 E-TIYSV---ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~-~l~~~---~~~~~~~~~~--~l~p~~  389 (496)
                      . +++|+   .+...+++..  .|.|++
T Consensus       109 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG  136 (246)
T 1y8c_A          109 LDSTNYIIDSDDLKKYFKAVSNHLKEGG  136 (246)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHTTEEEEE
T ss_pred             CccccccCCHHHHHHHHHHHHHhcCCCc
Confidence            8 99999   6667777652  556654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.00  E-value=2.7e-10  Score=115.29  Aligned_cols=116  Identities=19%  Similarity=0.284  Sum_probs=84.2

Q ss_pred             CCccccceeecccccCCCccccCceeeecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHH
Q psy11730        245 PLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQE  323 (496)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~  323 (496)
                      .+|+.+.....+..|+.+..+         .....+.|.+... .++++|||||||+|.+++.+++.+..+|+|+|+|+ 
T Consensus        14 ~y~~~y~~~~~~~~ml~d~~r---------~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-   83 (348)
T 2y1w_A           14 QYFQFYGYLSQQQNMMQDYVR---------TGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-   83 (348)
T ss_dssp             HHHHHHTCHHHHHHHHTCHHH---------HHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-
T ss_pred             HHHHHHhhhhHHHHHhcchHH---------HHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-
Confidence            355555555566666666432         2222344444433 46889999999999999999998888999999996 


Q ss_pred             HHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcccccccc
Q psy11730        324 VIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       324 ~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      |++.|+++....  +...+++++.+|+++++.  .++||+|++..+++|+.
T Consensus        84 ~~~~a~~~~~~~--~l~~~v~~~~~d~~~~~~--~~~~D~Ivs~~~~~~~~  130 (348)
T 2y1w_A           84 MAQHAEVLVKSN--NLTDRIVVIPGKVEEVSL--PEQVDIIISEPMGYMLF  130 (348)
T ss_dssp             HHHHHHHHHHHT--TCTTTEEEEESCTTTCCC--SSCEEEEEECCCBTTBT
T ss_pred             HHHHHHHHHHHc--CCCCcEEEEEcchhhCCC--CCceeEEEEeCchhcCC
Confidence            888777654322  233689999999998764  46899999999988874

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.00  E-value=4.1e-10  Score=122.71  Aligned_cols=100  Identities=17%  Similarity=0.146  Sum_probs=79.4

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCccccc-c--cCCCCceEEEecccCCccccCCCcee
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILM-N--TDNLEKCKFYHGDWGSLSAVIHSKFD  362 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~-~--~~~~~~v~~~~~d~~~~~~~~~~~fD  362 (496)
                      .++.+|||||||+|.++..+++.++  .+|+|+|+|+.|++.|+++.... +  .....+++|+++|+.+++.. .++||
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~-d~sFD  798 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSR-LHDVD  798 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTT-SCSCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcc-cCCee
Confidence            3688999999999999999999884  79999999999999998743211 1  12356899999999998764 58999


Q ss_pred             EEEEccccccccchHh--Hhhe--eeecCC
Q psy11730        363 IILTSETIYSVANYNK--LLTV--WCLFPT  388 (496)
Q Consensus       363 ~Ii~~~~l~~~~~~~~--~~~~--~~l~p~  388 (496)
                      +|++..+++|+++...  +++.  ..|.|+
T Consensus       799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKPG  828 (950)
T 3htx_A          799 IGTCLEVIEHMEEDQACEFGEKVLSLFHPK  828 (950)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence            9999999999987663  5544  245554

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.00  E-value=1.5e-09  Score=101.07  Aligned_cols=94  Identities=15%  Similarity=0.135  Sum_probs=74.5

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+...+.+... .++.+|||||||+|.++..+++. ..+|+|+|+|+.+++.++++....+   ..++++..+|+.+...
T Consensus        64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~  139 (210)
T 3lbf_A           64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLD---LHNVSTRHGDGWQGWQ  139 (210)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCG
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcC---CCceEEEECCcccCCc
Confidence            34444444443 45789999999999999999988 5789999999999999987654322   4479999999887554


Q ss_pred             cCCCceeEEEEccccccccc
Q psy11730        356 VIHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~  375 (496)
                      . .++||+|++..+++++.+
T Consensus       140 ~-~~~~D~i~~~~~~~~~~~  158 (210)
T 3lbf_A          140 A-RAPFDAIIVTAAPPEIPT  158 (210)
T ss_dssp             G-GCCEEEEEESSBCSSCCT
T ss_pred             c-CCCccEEEEccchhhhhH
Confidence            3 578999999999998865

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.99  E-value=1.1e-09  Score=102.74  Aligned_cols=97  Identities=19%  Similarity=0.227  Sum_probs=76.7

Q ss_pred             HHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCc
Q psy11730        282 IKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSK  360 (496)
Q Consensus       282 l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~  360 (496)
                      +.+....++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++.          ..+..+|+.+... ..+++
T Consensus        25 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~~~~   93 (230)
T 3cc8_A           25 LLKHIKKEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL----------DHVVLGDIETMDMPYEEEQ   93 (230)
T ss_dssp             HHTTCCTTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS----------SEEEESCTTTCCCCSCTTC
T ss_pred             HHHHhccCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC----------CcEEEcchhhcCCCCCCCc
Confidence            333333467899999999999999999885 89999999999999988653          2578888876422 22578


Q ss_pred             eeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        361 FDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       361 fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ||+|++..+++|++++..+++..  .+.|++
T Consensus        94 fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG  124 (230)
T 3cc8_A           94 FDCVIFGDVLEHLFDPWAVIEKVKPYIKQNG  124 (230)
T ss_dssp             EEEEEEESCGGGSSCHHHHHHHTGGGEEEEE
T ss_pred             cCEEEECChhhhcCCHHHHHHHHHHHcCCCC
Confidence            99999999999999998888763  555554

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.99  E-value=5.3e-10  Score=105.82  Aligned_cols=99  Identities=15%  Similarity=0.181  Sum_probs=72.1

Q ss_pred             HHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC-Ccc
Q psy11730        276 FDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG-SLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~-~~~  354 (496)
                      ..++..+......++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++        ..+++++.+|+. .++
T Consensus        35 ~~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~  105 (226)
T 3m33_A           35 ELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARAN--------APHADVYEWNGKGELP  105 (226)
T ss_dssp             THHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHH--------CTTSEEEECCSCSSCC
T ss_pred             HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHh--------CCCceEEEcchhhccC
Confidence            344444443333468899999999999999998885 5899999999999998865        347899999995 444


Q ss_pred             ccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        355 AVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ...+++||+|+++      .++..+++..  .|.|++
T Consensus       106 ~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG  136 (226)
T 3m33_A          106 AGLGAPFGLIVSR------RGPTSVILRLPELAAPDA  136 (226)
T ss_dssp             TTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEE
T ss_pred             CcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCc
Confidence            3325799999997      2444444442  455654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.99  E-value=2.4e-10  Score=113.26  Aligned_cols=98  Identities=15%  Similarity=0.047  Sum_probs=78.0

Q ss_pred             CCCCeEEEecCcCCHHHHHHH--HccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTL--MNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la--~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||||||+|.++..++  .....+|+|+|+|+.+++.++++....+  ...+++++.+|+.+++.  .++||+|+
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--~~~fD~v~  192 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHRQDAWKLDT--REGYDLLT  192 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEECCGGGCCC--CSCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECchhcCCc--cCCeEEEE
Confidence            357899999999999999985  3344799999999999999987653322  23469999999998775  38999999


Q ss_pred             EccccccccchHh---Hhhe--eeecCCC
Q psy11730        366 TSETIYSVANYNK---LLTV--WCLFPTH  389 (496)
Q Consensus       366 ~~~~l~~~~~~~~---~~~~--~~l~p~~  389 (496)
                      ++.+++|+++...   +++.  ..|.|+|
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  221 (305)
T 3ocj_A          193 SNGLNIYEPDDARVTELYRRFWQALKPGG  221 (305)
T ss_dssp             CCSSGGGCCCHHHHHHHHHHHHHHEEEEE
T ss_pred             ECChhhhcCCHHHHHHHHHHHHHhcCCCe
Confidence            9999999988876   4554  2566665

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.99  E-value=8.5e-10  Score=103.41  Aligned_cols=81  Identities=14%  Similarity=0.051  Sum_probs=66.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii~  366 (496)
                      ++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|+++....+   ..++.++.+|+.+++. ...++||+|++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            577999999999999999998875 699999999999999987654332   3689999999998652 22578999999


Q ss_pred             cccccc
Q psy11730        367 SETIYS  372 (496)
Q Consensus       367 ~~~l~~  372 (496)
                      +.+..+
T Consensus       118 ~~~~~~  123 (214)
T 1yzh_A          118 NFSDPW  123 (214)
T ss_dssp             ESCCCC
T ss_pred             ECCCCc
Confidence            877544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.98  E-value=5.6e-10  Score=109.33  Aligned_cols=95  Identities=19%  Similarity=0.092  Sum_probs=74.2

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||+|||+|.+++.+++.+..+|+|+|+|+.|++.|+++...++  ...+++++++|+.++..  .++||+|++++
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~--~~~~v~~~~~D~~~~~~--~~~fD~Vi~~~  200 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG--ENIADRILMGY  200 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC--CSCEEEEEECC
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECCHHHhcc--cCCccEEEECC
Confidence            488999999999999999999888789999999999999987654333  23459999999998876  67999999988


Q ss_pred             ccccccchHhHhheeeecCCC
Q psy11730        369 TIYSVANYNKLLTVWCLFPTH  389 (496)
Q Consensus       369 ~l~~~~~~~~~~~~~~l~p~~  389 (496)
                      +.....-...+.+  .|.|+|
T Consensus       201 p~~~~~~l~~~~~--~LkpgG  219 (278)
T 2frn_A          201 VVRTHEFIPKALS--IAKDGA  219 (278)
T ss_dssp             CSSGGGGHHHHHH--HEEEEE
T ss_pred             chhHHHHHHHHHH--HCCCCe
Confidence            7544333333333  455654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.97  E-value=1.4e-09  Score=101.54  Aligned_cols=93  Identities=12%  Similarity=0.033  Sum_probs=70.8

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.+++.+++. ..+|+|+|+|++|++.|+++....+  ...+++++.+|+.+.... ...||+|++.
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~~-~~~~D~v~~~  129 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYG--LSPRMRAVQGTAPAALAD-LPLPEAVFIG  129 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCTTGGGTT-SCCCSEEEEC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCEEEEeCchhhhccc-CCCCCEEEEC
Confidence            35789999999999999999988 6789999999999999987654332  223899999999884332 3579999998


Q ss_pred             cccccccchHhHhhee--eecCCC
Q psy11730        368 ETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ..+    +.+ +++..  .|.|++
T Consensus       130 ~~~----~~~-~l~~~~~~LkpgG  148 (204)
T 3njr_A          130 GGG----SQA-LYDRLWEWLAPGT  148 (204)
T ss_dssp             SCC----CHH-HHHHHHHHSCTTC
T ss_pred             Ccc----cHH-HHHHHHHhcCCCc
Confidence            755    333 55442  456655

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.97  E-value=7.9e-10  Score=108.37  Aligned_cols=94  Identities=10%  Similarity=0.054  Sum_probs=73.6

Q ss_pred             CCCCeEEEecCcCCHHH-HHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLG-LYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~-~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .++.+|||||||+|.++ +.+++....+|+|+|+|++|++.|+++....+  . .+++|+.+|+.+++   +++||+|++
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g--l-~~v~~v~gDa~~l~---d~~FDvV~~  194 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG--V-DGVNVITGDETVID---GLEFDVLMV  194 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT--C-CSEEEEESCGGGGG---GCCCSEEEE
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC--C-CCeEEEECchhhCC---CCCcCEEEE
Confidence            35889999999998665 55566556799999999999999998764433  2 78999999998875   589999998


Q ss_pred             ccccccccchHhHhhee--eecCCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      ...   .++.+.+++++  .|.|++.
T Consensus       195 ~a~---~~d~~~~l~el~r~LkPGG~  217 (298)
T 3fpf_A          195 AAL---AEPKRRVFRNIHRYVDTETR  217 (298)
T ss_dssp             CTT---CSCHHHHHHHHHHHCCTTCE
T ss_pred             CCC---ccCHHHHHHHHHHHcCCCcE
Confidence            655   46777777763  6677663

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.97  E-value=2.9e-10  Score=111.96  Aligned_cols=100  Identities=19%  Similarity=0.209  Sum_probs=71.1

Q ss_pred             CCCeEEEecCcCCHHHHHH----HHccC-Ce--EEEEeCCHHHHHHhcCcccccccCCCCceE--EEecccCCccc----
Q psy11730        289 DKLSVLDVGCGAGLLGLYT----LMNGA-AH--VSFQDYNQEVIESLTLPNILMNTDNLEKCK--FYHGDWGSLSA----  355 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~l----a~~~~-~~--v~giD~s~~~i~~a~~~~~~~~~~~~~~v~--~~~~d~~~~~~----  355 (496)
                      ++.+|||||||+|.++..+    +..++ ..  ++|+|+|++|++.|+++.....  ...++.  +..++.+++..    
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS--NLENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS--SCTTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc--CCCcceEEEEecchhhhhhhhcc
Confidence            4669999999999876543    33322 43  4999999999999887653211  233444  44556655431    


Q ss_pred             -cCCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        356 -VIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       356 -~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                       ..+++||+|++..+++|++|++.++++.  +|.|+|.
T Consensus       130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~  167 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAK  167 (292)
T ss_dssp             TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEE
T ss_pred             ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcE
Confidence             1267899999999999999999999873  7788764

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.97  E-value=1.1e-09  Score=104.88  Aligned_cols=95  Identities=24%  Similarity=0.271  Sum_probs=72.2

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++....    ..++.++.+|+.+++.  .++||+|++.
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~--~~~fD~v~~~  112 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKER----NLKIEFLQGDVLEIAF--KNEFDAVTMF  112 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHT----TCCCEEEESCGGGCCC--CSCEEEEEEC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhc----CCceEEEECChhhccc--CCCccEEEEc
Confidence            457899999999999999999886 48999999999999998765332    2368999999988764  4789999986


Q ss_pred             c-ccccc--cchHhHhhee--eecCCC
Q psy11730        368 E-TIYSV--ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~-~l~~~--~~~~~~~~~~--~l~p~~  389 (496)
                      . .++++  .+...+++..  .|.|+|
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~~~L~pgG  139 (252)
T 1wzn_A          113 FSTIMYFDEEDLRKLFSKVAEALKPGG  139 (252)
T ss_dssp             SSGGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             CCchhcCCHHHHHHHHHHHHHHcCCCe
Confidence            4 34443  3455666542  566655

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.97  E-value=4.2e-10  Score=105.53  Aligned_cols=91  Identities=19%  Similarity=0.272  Sum_probs=73.7

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc---cccCCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL---SAVIHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~I  364 (496)
                      ..+.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++         .++.+..+++.++   +.....+||+|
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~~~~~fD~v  120 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAKVPVGKDYDLI  120 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh---------cccccchhhHHhhcccccccCCCccEE
Confidence            3578999999999999999988854 899999999999998865         3567788887776   33334569999


Q ss_pred             EEccccccccchHhHhhee--eecCCC
Q psy11730        365 LTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       365 i~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ++..+++ ..++..+++..  .|.|++
T Consensus       121 ~~~~~l~-~~~~~~~l~~~~~~L~pgG  146 (227)
T 3e8s_A          121 CANFALL-HQDIIELLSAMRTLLVPGG  146 (227)
T ss_dssp             EEESCCC-SSCCHHHHHHHHHTEEEEE
T ss_pred             EECchhh-hhhHHHHHHHHHHHhCCCe
Confidence            9999999 78888888763  566655

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.97  E-value=2.1e-10  Score=113.23  Aligned_cols=109  Identities=17%  Similarity=0.220  Sum_probs=79.1

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      .+..+.......+.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++....+.....+++++.+|+.+++.  
T Consensus        71 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~--  147 (299)
T 3g2m_A           71 EAREFATRTGPVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL--  147 (299)
T ss_dssp             HHHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC--
T ss_pred             HHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc--
Confidence            3344444444456699999999999999999886 5799999999999999876533211011579999999998775  


Q ss_pred             CCceeEEEEc-ccccccc--chHhHhhee--eecCCC
Q psy11730        358 HSKFDIILTS-ETIYSVA--NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       358 ~~~fD~Ii~~-~~l~~~~--~~~~~~~~~--~l~p~~  389 (496)
                      .++||+|++. .++++++  +...+++..  .|.|++
T Consensus       148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG  184 (299)
T 3g2m_A          148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGG  184 (299)
T ss_dssp             SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEE
T ss_pred             CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCc
Confidence            6899999965 6666664  345666552  566665

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.96  E-value=2.2e-09  Score=100.60  Aligned_cols=124  Identities=16%  Similarity=0.049  Sum_probs=78.6

Q ss_pred             CCCccccC----ceeeecchH-HHHHHHHhC--CCC-CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcC
Q psy11730        260 LKPNVYEG----GYKIWECTF-DLLNFIKDN--VAV-DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTL  330 (496)
Q Consensus       260 ~~~~~~~~----~~~~~~~~~-~l~~~l~~~--~~~-~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~  330 (496)
                      +.+.+|..    .|..|.... .+...+...  ..+ ++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.+.+
T Consensus        20 ~~~~~Y~~~~~~~y~~~~~~~~~l~~~~~~~l~~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~   99 (210)
T 1nt2_A           20 KYGSHYGEKVFDGYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLE   99 (210)
T ss_dssp             SCCCSSSCCEETTEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHH
T ss_pred             CCccccchhhhhhhhhcChhHHHHHHHHHhhcccCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHH
Confidence            33355555    677775532 344444443  233 47799999999999999998865 3689999999998765443


Q ss_pred             cccccccCCCCceEEEecccCCccc--cCCCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730        331 PNILMNTDNLEKCKFYHGDWGSLSA--VIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       331 ~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      .+..     ..++.++.+|+.....  ...++||+|+++..  +......++++  ..|.|+|.
T Consensus       100 ~a~~-----~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~--~~~~~~~~l~~~~r~LkpgG~  156 (210)
T 1nt2_A          100 LVRE-----RNNIIPLLFDASKPWKYSGIVEKVDLIYQDIA--QKNQIEILKANAEFFLKEKGE  156 (210)
T ss_dssp             HHHH-----CSSEEEECSCTTCGGGTTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEE
T ss_pred             HHhc-----CCCeEEEEcCCCCchhhcccccceeEEEEecc--ChhHHHHHHHHHHHHhCCCCE
Confidence            3211     2468888888876421  11478999999832  22223333443  26777664

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.95  E-value=3.3e-10  Score=111.33  Aligned_cols=103  Identities=13%  Similarity=0.098  Sum_probs=73.7

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccc---------------cCC------------C
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN---------------TDN------------L  340 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~---------------~~~------------~  340 (496)
                      .++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++.....               .+.            .
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            4678999999999997666555556799999999999998876432110               000            0


Q ss_pred             CceEEEecccCC-cccc----CCCceeEEEEcccccc----ccchHhHhhee--eecCCCC
Q psy11730        341 EKCKFYHGDWGS-LSAV----IHSKFDIILTSETIYS----VANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       341 ~~v~~~~~d~~~-~~~~----~~~~fD~Ii~~~~l~~----~~~~~~~~~~~--~l~p~~~  390 (496)
                      ..+.++.+|+.+ ++..    ..++||+|+++.++++    ++++..+++++  .|.|+|.
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~  210 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH  210 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCE
Confidence            125677778877 4321    2457999999999999    67888888763  6777763

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.95  E-value=4.8e-10  Score=107.17  Aligned_cols=94  Identities=22%  Similarity=0.264  Sum_probs=72.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc--CCCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV--IHSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~Ii  365 (496)
                      ++.+|||||||+|.+++.++... ..+|+|+|+|+.|++.++++....+   ..+++++++|+++++..  ..++||+|+
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~fD~V~  146 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---LENTTFCHDRAETFGQRKDVRESYDIVT  146 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEeccHHHhcccccccCCccEEE
Confidence            57899999999999999998754 4789999999999999987654332   34799999999887642  247899999


Q ss_pred             EccccccccchHhHhhee--eecCCC
Q psy11730        366 TSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       366 ~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +..    +.++..+++..  .|.|+|
T Consensus       147 ~~~----~~~~~~~l~~~~~~LkpgG  168 (240)
T 1xdz_A          147 ARA----VARLSVLSELCLPLVKKNG  168 (240)
T ss_dssp             EEC----CSCHHHHHHHHGGGEEEEE
T ss_pred             Eec----cCCHHHHHHHHHHhcCCCC
Confidence            976    35666766652  566655

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.95  E-value=7.4e-10  Score=110.14  Aligned_cols=101  Identities=18%  Similarity=0.107  Sum_probs=77.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccccc----CCCCceEEEecccCCcc----cc-CCC
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT----DNLEKCKFYHGDWGSLS----AV-IHS  359 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~----~~~~~v~~~~~d~~~~~----~~-~~~  359 (496)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.++++......    ....+++++.+|+++++    .. ..+
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            5779999999999999999887778999999999999998876532210    02347999999999875    22 135


Q ss_pred             ceeEEEEccccccc-c---chHhHhhee--eecCCC
Q psy11730        360 KFDIILTSETIYSV-A---NYNKLLTVW--CLFPTH  389 (496)
Q Consensus       360 ~fD~Ii~~~~l~~~-~---~~~~~~~~~--~l~p~~  389 (496)
                      +||+|++..+++++ .   +...+++.+  .|.|+|
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG  149 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGG  149 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCc
Confidence            89999999999987 3   345666653  566665

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.95  E-value=1e-09  Score=104.35  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=78.2

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      ..+++..... ++.+|||||||+|.++..+++.  .+|+|+|+|+.|++.++++....    ..++++..+|+.+++.  
T Consensus        23 ~~~~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~--   93 (243)
T 3d2l_A           23 WVAWVLEQVE-PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMET----NRHVDFWVQDMRELEL--   93 (243)
T ss_dssp             HHHHHHHHSC-TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCGGGCCC--
T ss_pred             HHHHHHHHcC-CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhc----CCceEEEEcChhhcCC--
Confidence            3444544432 4689999999999999998877  78999999999999998765322    2578999999988764  


Q ss_pred             CCceeEEEEcc-ccccc---cchHhHhhee--eecCCC
Q psy11730        358 HSKFDIILTSE-TIYSV---ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       358 ~~~fD~Ii~~~-~l~~~---~~~~~~~~~~--~l~p~~  389 (496)
                      .++||+|++.. +++|+   .+...+++..  .|.|++
T Consensus        94 ~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG  131 (243)
T 3d2l_A           94 PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGG  131 (243)
T ss_dssp             SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEE
T ss_pred             CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCe
Confidence            47899999986 99998   4555566542  566655

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.95  E-value=5.3e-10  Score=105.56  Aligned_cols=80  Identities=8%  Similarity=-0.024  Sum_probs=65.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc--cCCCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA--VIHSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Ii  365 (496)
                      .+.+|||||||+|.++..+|+..+ ..|+|||+|+.|++.|+++....   ...|+.++.+|+.++..  ..+++||.|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~---~l~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEE---GLSNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHT---TCSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHcCCCChheEE
Confidence            567999999999999999998876 68999999999999988765332   35689999999887522  2368999999


Q ss_pred             Eccccc
Q psy11730        366 TSETIY  371 (496)
Q Consensus       366 ~~~~l~  371 (496)
                      ++.+..
T Consensus       111 ~~~~~p  116 (218)
T 3dxy_A          111 LFFPDP  116 (218)
T ss_dssp             EESCCC
T ss_pred             EeCCCC
Confidence            984443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.95  E-value=1.1e-09  Score=101.40  Aligned_cols=92  Identities=13%  Similarity=0.049  Sum_probs=71.0

Q ss_pred             eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccc
Q psy11730        292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~  371 (496)
                      +|||||||+|.++..+++.+. +|+|+|+|+.|++.++++....+    .++.+..+|+.+++.. .++||+|++.....
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~-~~~fD~v~~~~~~~  105 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKG----VKITTVQSNLADFDIV-ADAWEGIVSIFCHL  105 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHT----CCEEEECCBTTTBSCC-TTTCSEEEEECCCC
T ss_pred             CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcC----CceEEEEcChhhcCCC-cCCccEEEEEhhcC
Confidence            999999999999999988764 89999999999999887653322    2789999999887643 57999999965433


Q ss_pred             cccchHhHhhee--eecCCC
Q psy11730        372 SVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       372 ~~~~~~~~~~~~--~l~p~~  389 (496)
                      +..+...+++..  .|.|++
T Consensus       106 ~~~~~~~~l~~~~~~L~pgG  125 (202)
T 2kw5_A          106 PSSLRQQLYPKVYQGLKPGG  125 (202)
T ss_dssp             CHHHHHHHHHHHHTTCCSSE
T ss_pred             CHHHHHHHHHHHHHhcCCCc
Confidence            335666676652  455554

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.94  E-value=9.2e-10  Score=106.71  Aligned_cols=98  Identities=15%  Similarity=0.153  Sum_probs=72.1

Q ss_pred             cchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEeccc
Q psy11730        273 ECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDW  350 (496)
Q Consensus       273 ~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~  350 (496)
                      .++..|+.++.   ..++.+|||||||+|.+++.+++..+ .+|+|+|+++.+++.|+++..... .+...+++++++|+
T Consensus        23 ~D~~lL~~~~~---~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~   99 (260)
T 2ozv_A           23 MDAMLLASLVA---DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV   99 (260)
T ss_dssp             CHHHHHHHTCC---CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT
T ss_pred             cHHHHHHHHhc---ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH
Confidence            45555555543   22467999999999999999998875 699999999999999987653310 11234699999999


Q ss_pred             CCccc------cCCCceeEEEEccccccc
Q psy11730        351 GSLSA------VIHSKFDIILTSETIYSV  373 (496)
Q Consensus       351 ~~~~~------~~~~~fD~Ii~~~~l~~~  373 (496)
                      .+...      ...++||+|++++++...
T Consensus       100 ~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          100 TLRAKARVEAGLPDEHFHHVIMNPPYNDA  128 (260)
T ss_dssp             TCCHHHHHHTTCCTTCEEEEEECCCC---
T ss_pred             HHHhhhhhhhccCCCCcCEEEECCCCcCC
Confidence            88732      225789999999888754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.94  E-value=1.7e-09  Score=97.73  Aligned_cols=98  Identities=19%  Similarity=0.273  Sum_probs=74.5

Q ss_pred             hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ...+.+.+.+... .++.+|||+|||+|.++..+++ ...+|+|+|+|+.+++.++++....+   ..+++++.+|+.+ 
T Consensus        20 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-   94 (183)
T 2yxd_A           20 KEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFN---IKNCQIIKGRAED-   94 (183)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTT---CCSEEEEESCHHH-
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcC---CCcEEEEECCccc-
Confidence            3444555554444 3578999999999999999888 66899999999999999987654332   3679999999887 


Q ss_pred             cccCCCceeEEEEccccccccchHhHhhe
Q psy11730        354 SAVIHSKFDIILTSETIYSVANYNKLLTV  382 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~  382 (496)
                      ... .+.||+|+++.+    .+...+++.
T Consensus        95 ~~~-~~~~D~i~~~~~----~~~~~~l~~  118 (183)
T 2yxd_A           95 VLD-KLEFNKAFIGGT----KNIEKIIEI  118 (183)
T ss_dssp             HGG-GCCCSEEEECSC----SCHHHHHHH
T ss_pred             ccc-CCCCcEEEECCc----ccHHHHHHH
Confidence            322 478999999988    555666654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.93  E-value=1.2e-09  Score=102.66  Aligned_cols=81  Identities=12%  Similarity=-0.002  Sum_probs=65.2

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii~  366 (496)
                      .+.+|||||||+|.+++.+++..+ ..|+|+|+|+.|++.|+++....   ...|+.++.+|+.+++. ...++||.|++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~---~~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS---EAQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS---CCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHc---CCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            577999999999999999998765 78999999999999998765433   24689999999988652 22578999998


Q ss_pred             cccccc
Q psy11730        367 SETIYS  372 (496)
Q Consensus       367 ~~~l~~  372 (496)
                      +.+..+
T Consensus       115 ~~~~p~  120 (213)
T 2fca_A          115 NFSDPW  120 (213)
T ss_dssp             ESCCCC
T ss_pred             ECCCCC
Confidence            765443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.93  E-value=3.8e-09  Score=99.86  Aligned_cols=92  Identities=16%  Similarity=0.121  Sum_probs=72.0

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .++..+.+... .++.+|||||||+|.++..++..+ .+|+|+|+|+.+++.++++....     .+++++.+|+.+...
T Consensus        57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~  130 (231)
T 1vbf_A           57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGYE  130 (231)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCCG
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhc-----CCeEEEECCcccccc
Confidence            33444444443 357899999999999999999887 79999999999999988765321     179999999887322


Q ss_pred             cCCCceeEEEEccccccccc
Q psy11730        356 VIHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~  375 (496)
                       ..++||+|++..+++++.+
T Consensus       131 -~~~~fD~v~~~~~~~~~~~  149 (231)
T 1vbf_A          131 -EEKPYDRVVVWATAPTLLC  149 (231)
T ss_dssp             -GGCCEEEEEESSBBSSCCH
T ss_pred             -cCCCccEEEECCcHHHHHH
Confidence             2578999999999998853

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.93  E-value=2.3e-09  Score=103.06  Aligned_cols=98  Identities=8%  Similarity=-0.031  Sum_probs=69.8

Q ss_pred             hHHHHHHHHhCCC---CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        275 TFDLLNFIKDNVA---VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       275 ~~~l~~~l~~~~~---~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      ...++..+.....   .++.+|||||||+|.+++.++... ..+|+|+|+|+.|++.|+++....+  ...+++++++|+
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~  125 (254)
T 2h00_A           48 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQ  125 (254)
T ss_dssp             HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCT
T ss_pred             HHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC--CCccEEEEEcch
Confidence            3344444544433   257799999999999999988764 4799999999999999987754332  234599999997


Q ss_pred             CCc-cc-cC---CCceeEEEEcccccccc
Q psy11730        351 GSL-SA-VI---HSKFDIILTSETIYSVA  374 (496)
Q Consensus       351 ~~~-~~-~~---~~~fD~Ii~~~~l~~~~  374 (496)
                      .+. .. ..   +++||+|++++++++..
T Consensus       126 ~~~~~~~~~~~~~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          126 KTLLMDALKEESEIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             TCSSTTTSTTCCSCCBSEEEECCCCC---
T ss_pred             hhhhhhhhhcccCCcccEEEECCCCccCc
Confidence            762 21 11   25899999999987654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.93  E-value=1.1e-09  Score=103.02  Aligned_cols=84  Identities=17%  Similarity=0.126  Sum_probs=71.1

Q ss_pred             CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSET  369 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~  369 (496)
                      +.+|||||||+|.++..++..     +|+|+|+.|++.++++          ++.++.+|+.+++.. .++||+|++..+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~-~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR----------GVFVLKGTAENLPLK-DESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT----------TCEEEECBTTBCCSC-TTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc----------CCEEEEcccccCCCC-CCCeeEEEEcch
Confidence            789999999999999987655     9999999999998754          578899998887643 578999999999


Q ss_pred             cccccchHhHhhee--eecCCC
Q psy11730        370 IYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       370 l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ++|++++..+++..  .|.|++
T Consensus       112 l~~~~~~~~~l~~~~~~L~pgG  133 (219)
T 1vlm_A          112 ICFVDDPERALKEAYRILKKGG  133 (219)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEE
T ss_pred             HhhccCHHHHHHHHHHHcCCCc
Confidence            99999999888763  556654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.92  E-value=1e-09  Score=111.65  Aligned_cols=115  Identities=14%  Similarity=0.082  Sum_probs=80.6

Q ss_pred             chHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccc------cccCCCCceEE
Q psy11730        274 CTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNIL------MNTDNLEKCKF  345 (496)
Q Consensus       274 ~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~------~~~~~~~~v~~  345 (496)
                      ....++..+.+... .++.+|||||||+|.+++.++.. +..+|+|||+|+.|++.|+++...      .+.....+++|
T Consensus       157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            34444455555444 35889999999999999999865 445699999999999988764311      11111368999


Q ss_pred             EecccCCccccCC-CceeEEEEccccccccchHhHhhe--eeecCCC
Q psy11730        346 YHGDWGSLSAVIH-SKFDIILTSETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       346 ~~~d~~~~~~~~~-~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      +++|+.+++.... ..||+|+++.++ +.++....+.+  ..|.|++
T Consensus       237 i~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGG  282 (438)
T 3uwp_A          237 ERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGG  282 (438)
T ss_dssp             EECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTC
T ss_pred             EECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCc
Confidence            9999998765311 479999998776 45666666654  2556654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.92  E-value=2.7e-09  Score=96.27  Aligned_cols=97  Identities=11%  Similarity=0.072  Sum_probs=69.0

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....+  ...++ ++.+|..+......++||+|++
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~-~~~~d~~~~~~~~~~~~D~i~~  100 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG--VSDRI-AVQQGAPRAFDDVPDNPDVIFI  100 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT--CTTSE-EEECCTTGGGGGCCSCCSEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC--CCCCE-EEecchHhhhhccCCCCCEEEE
Confidence            357799999999999999998875 4789999999999999987653322  22377 7888875433222378999999


Q ss_pred             ccccccccchHhHhheeeecCCC
Q psy11730        367 SETIYSVANYNKLLTVWCLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~~l~p~~  389 (496)
                      ..++++..-.+.+.+  .|.|++
T Consensus       101 ~~~~~~~~~l~~~~~--~L~~gG  121 (178)
T 3hm2_A          101 GGGLTAPGVFAAAWK--RLPVGG  121 (178)
T ss_dssp             CC-TTCTTHHHHHHH--TCCTTC
T ss_pred             CCcccHHHHHHHHHH--hcCCCC
Confidence            999988222222222  455655

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.92  E-value=3.1e-09  Score=103.72  Aligned_cols=97  Identities=15%  Similarity=0.196  Sum_probs=75.9

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .+....+++.+.+....++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.++++....+   ..+++++++|+
T Consensus        92 r~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~---~~~v~~~~~d~  168 (276)
T 2b3t_A           92 RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA---IKNIHILQSDW  168 (276)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCST
T ss_pred             CchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEcch
Confidence            3456667777766554457799999999999999998654 4799999999999999987754332   34799999998


Q ss_pred             CCccccCCCceeEEEEccccccc
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .+...  .++||+|++++++...
T Consensus       169 ~~~~~--~~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          169 FSALA--GQQFAMIVSNPPYIDE  189 (276)
T ss_dssp             TGGGT--TCCEEEEEECCCCBCT
T ss_pred             hhhcc--cCCccEEEECCCCCCc
Confidence            87432  5789999999887655

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.92  E-value=2.1e-09  Score=109.81  Aligned_cols=108  Identities=21%  Similarity=0.318  Sum_probs=76.2

Q ss_pred             HHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        280 NFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       280 ~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      +++.+... ..+.+|||||||+|.+++.+++.++ .+|+|+|+|+.|++.++++...++.....+++|..+|+.+...  
T Consensus       212 ~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--  289 (375)
T 4dcm_A          212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--  289 (375)
T ss_dssp             HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--
T ss_pred             HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--
Confidence            34444443 3468999999999999999999874 7999999999999999987654432223468899999887332  


Q ss_pred             CCceeEEEEccccccccch-----HhHhhee--eecCCC
Q psy11730        358 HSKFDIILTSETIYSVANY-----NKLLTVW--CLFPTH  389 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~-----~~~~~~~--~l~p~~  389 (496)
                      .++||+|++++++++....     ..+++..  .|.|+|
T Consensus       290 ~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG  328 (375)
T 4dcm_A          290 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING  328 (375)
T ss_dssp             TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEE
T ss_pred             CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCc
Confidence            5789999999999864322     2344442  566665

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.91  E-value=2.3e-09  Score=97.81  Aligned_cols=91  Identities=21%  Similarity=0.302  Sum_probs=72.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc-
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS-  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~-  367 (496)
                      ++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++.        .++.++.+|+.+++.. .++||+|++. 
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~--------~~~~~~~~d~~~~~~~-~~~~D~i~~~~  115 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDF--------PEARWVVGDLSVDQIS-ETDFDLIVSAG  115 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTSCCC-CCCEEEEEECC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhC--------CCCcEEEcccccCCCC-CCceeEEEECC
Confidence            67899999999999999999885 58999999999999988643        3588999999886543 5789999998 


Q ss_pred             cccccc--cchHhHhhee--eecCCC
Q psy11730        368 ETIYSV--ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~--~~~~~~~~~~--~l~p~~  389 (496)
                      .+++++  ++...+++..  .+.|++
T Consensus       116 ~~~~~~~~~~~~~~l~~~~~~l~~~G  141 (195)
T 3cgg_A          116 NVMGFLAEDGREPALANIHRALGADG  141 (195)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             cHHhhcChHHHHHHHHHHHHHhCCCC
Confidence            678877  3445666542  455554

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.91  E-value=1.6e-09  Score=102.82  Aligned_cols=100  Identities=13%  Similarity=-0.049  Sum_probs=70.0

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCC-HHHHHHh---cCcccccccCCCCceEEEecccCCccccCCCcee
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYN-QEVIESL---TLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFD  362 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s-~~~i~~a---~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD  362 (496)
                      .++.+|||||||+|.++..+++..+ ..|+|+|+| +.|++.|   +++....   ...++.|..+|+++++......+|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~---~~~~v~~~~~d~~~l~~~~~d~v~   99 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG---GLSNVVFVIAAAESLPFELKNIAD   99 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT---CCSSEEEECCBTTBCCGGGTTCEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEcCHHHhhhhccCeEE
Confidence            3678999999999999999987554 689999999 7777666   7665332   356899999999988643335677


Q ss_pred             EEEEccccccc-----cchHhHhhe--eeecCCCC
Q psy11730        363 IILTSETIYSV-----ANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       363 ~Ii~~~~l~~~-----~~~~~~~~~--~~l~p~~~  390 (496)
                      .|.++.+..+.     .+...++++  ..|.|+|.
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~  134 (225)
T 3p2e_A          100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAH  134 (225)
T ss_dssp             EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEE
T ss_pred             EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcE
Confidence            77776553331     122344544  26777663

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.90  E-value=5.6e-10  Score=115.55  Aligned_cols=106  Identities=12%  Similarity=0.100  Sum_probs=78.5

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+++.+.+...+ ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....     ....|...+.+.++.
T Consensus        94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~l~~  167 (416)
T 4e2x_A           94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRV-----RTDFFEKATADDVRR  167 (416)
T ss_dssp             HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCE-----ECSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCc-----ceeeechhhHhhccc
Confidence            456666666554 477999999999999999998875 8999999999999998763111     011122233333333


Q ss_pred             cCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        356 VIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      . +++||+|++..+++|++++..++++.  .|.|+|
T Consensus       168 ~-~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG  202 (416)
T 4e2x_A          168 T-EGPANVIYAANTLCHIPYVQSVLEGVDALLAPDG  202 (416)
T ss_dssp             H-HCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEE
T ss_pred             C-CCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCe
Confidence            2 58999999999999999999999873  666765

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.89  E-value=5e-09  Score=99.50  Aligned_cols=116  Identities=12%  Similarity=0.073  Sum_probs=84.7

Q ss_pred             ceeeecchH-HHHHHHHhC---CCC-CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCC
Q psy11730        268 GYKIWECTF-DLLNFIKDN---VAV-DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNL  340 (496)
Q Consensus       268 ~~~~~~~~~-~l~~~l~~~---~~~-~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~  340 (496)
                      .|+.|+-.. .|+..|...   +.+ +|.+|||||||+|.++..+|+. |+ ++|+|+|++++|++.+++++.     ..
T Consensus        51 e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~-----~~  125 (233)
T 4df3_A           51 EYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR-----DR  125 (233)
T ss_dssp             EEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST-----TC
T ss_pred             eeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH-----hh
Confidence            688898754 466666543   334 4889999999999999999985 45 799999999999998876542     24


Q ss_pred             CceEEEecccCCcccc--CCCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730        341 EKCKFYHGDWGSLSAV--IHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       341 ~~v~~~~~d~~~~~~~--~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      .|+..+.+|.......  ..+.+|+|++..  .+..+.+.++.+  ..|.|+|.
T Consensus       126 ~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~--~~~~~~~~~l~~~~r~LKpGG~  177 (233)
T 4df3_A          126 RNIFPILGDARFPEKYRHLVEGVDGLYADV--AQPEQAAIVVRNARFFLRDGGY  177 (233)
T ss_dssp             TTEEEEESCTTCGGGGTTTCCCEEEEEECC--CCTTHHHHHHHHHHHHEEEEEE
T ss_pred             cCeeEEEEeccCccccccccceEEEEEEec--cCChhHHHHHHHHHHhccCCCE
Confidence            5888898887765432  257899999754  344566666655  36777764

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.89  E-value=1e-09  Score=115.63  Aligned_cols=93  Identities=22%  Similarity=0.303  Sum_probs=73.3

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+.+.+.+... .++.+|||||||+|.+++.+++.+..+|+|+|+|+ |++.|+++....+  ...+++++.+|+.+++.
T Consensus       145 ~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~g--l~~~v~~~~~d~~~~~~  221 (480)
T 3b3j_A          145 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSL  221 (480)
T ss_dssp             HHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCC
T ss_pred             HHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcC--CCCcEEEEECchhhCcc
Confidence            34455555443 46789999999999999999998878999999998 9888876543322  34689999999998654


Q ss_pred             cCCCceeEEEEcccccccc
Q psy11730        356 VIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~  374 (496)
                        .++||+|+++.++++..
T Consensus       222 --~~~fD~Ivs~~~~~~~~  238 (480)
T 3b3j_A          222 --PEQVDIIISEPMGYMLF  238 (480)
T ss_dssp             --SSCEEEEECCCCHHHHT
T ss_pred             --CCCeEEEEEeCchHhcC
Confidence              46899999999988774

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.88  E-value=2.9e-09  Score=96.92  Aligned_cols=108  Identities=19%  Similarity=0.148  Sum_probs=76.9

Q ss_pred             hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ...+...+.+... .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++....+  ...++.+..+|+.+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~   94 (192)
T 1l3i_A           18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPEA   94 (192)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHHHH
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcC--CCcceEEEecCHHHh
Confidence            3444455544433 457899999999999999999888 899999999999999887643322  226789999998762


Q ss_pred             cccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        354 SAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ... .+.||+|++..+++++   ..+++..  .+.|++
T Consensus        95 ~~~-~~~~D~v~~~~~~~~~---~~~l~~~~~~l~~gG  128 (192)
T 1l3i_A           95 LCK-IPDIDIAVVGGSGGEL---QEILRIIKDKLKPGG  128 (192)
T ss_dssp             HTT-SCCEEEEEESCCTTCH---HHHHHHHHHTEEEEE
T ss_pred             ccc-CCCCCEEEECCchHHH---HHHHHHHHHhcCCCc
Confidence            211 2689999999887654   4444431  455554

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.88  E-value=3.8e-09  Score=100.20  Aligned_cols=100  Identities=19%  Similarity=0.101  Sum_probs=71.8

Q ss_pred             HHHHH---HhCCCC-CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC
Q psy11730        278 LLNFI---KDNVAV-DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS  352 (496)
Q Consensus       278 l~~~l---~~~~~~-~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~  352 (496)
                      ++..+   .+...+ ++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.++++...     ..++.++.+|+.+
T Consensus        59 ~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~  133 (230)
T 1fbn_A           59 LAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----RENIIPILGDANK  133 (230)
T ss_dssp             HHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----CTTEEEEECCTTC
T ss_pred             HHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-----CCCeEEEECCCCC
Confidence            33555   333433 4779999999999999999987 447999999999999988765422     2689999999987


Q ss_pred             ----ccccCCCceeEEEEccccccccch---HhHhhee--eecCCC
Q psy11730        353 ----LSAVIHSKFDIILTSETIYSVANY---NKLLTVW--CLFPTH  389 (496)
Q Consensus       353 ----~~~~~~~~fD~Ii~~~~l~~~~~~---~~~~~~~--~l~p~~  389 (496)
                          .+.  .+.||+|+.     +++++   ..+++..  .|.|++
T Consensus       134 ~~~~~~~--~~~~D~v~~-----~~~~~~~~~~~l~~~~~~LkpgG  172 (230)
T 1fbn_A          134 PQEYANI--VEKVDVIYE-----DVAQPNQAEILIKNAKWFLKKGG  172 (230)
T ss_dssp             GGGGTTT--SCCEEEEEE-----CCCSTTHHHHHHHHHHHHEEEEE
T ss_pred             ccccccc--CccEEEEEE-----ecCChhHHHHHHHHHHHhCCCCc
Confidence                433  368999993     33444   4545442  566655

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.88  E-value=2.4e-09  Score=100.88  Aligned_cols=99  Identities=13%  Similarity=0.036  Sum_probs=74.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC-----Cce
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH-----SKF  361 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~f  361 (496)
                      ++++|||||||+|..++.+++..  ..+|+++|+++.+++.|+++....+  ...+++++.+|+.+......     ++|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG--LQDKVTILNGASQDLIPQLKKKYDVDTL  135 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC--CCCceEEEECCHHHHHHHHHHhcCCCce
Confidence            57899999999999999999853  4799999999999999987654332  23579999999866433222     689


Q ss_pred             eEEEEccccccccchHhHhhe-eeecCCC
Q psy11730        362 DIILTSETIYSVANYNKLLTV-WCLFPTH  389 (496)
Q Consensus       362 D~Ii~~~~l~~~~~~~~~~~~-~~l~p~~  389 (496)
                      |+|++....++..+...++.. ..|.|++
T Consensus       136 D~V~~d~~~~~~~~~~~~~~~~~~LkpgG  164 (221)
T 3u81_A          136 DMVFLDHWKDRYLPDTLLLEKCGLLRKGT  164 (221)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHTTCCCTTC
T ss_pred             EEEEEcCCcccchHHHHHHHhccccCCCe
Confidence            999999888877665555543 2455554

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.87  E-value=5.7e-09  Score=99.19  Aligned_cols=96  Identities=14%  Similarity=0.134  Sum_probs=72.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii~  366 (496)
                      ++++|||||||+|..++.+++.. ..+|+|+|+++.+++.|+++....+  ...+++++.+|+.+... ...++||+|++
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH--FENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            57899999999999999999865 4799999999999999987654332  23589999999987644 33689999998


Q ss_pred             ccccccccchHhHhhe--eeecCCC
Q psy11730        367 SETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      ......   ...+++.  ..|.|++
T Consensus       149 ~~~~~~---~~~~l~~~~~~LkpgG  170 (232)
T 3ntv_A          149 DAAKAQ---SKKFFEIYTPLLKHQG  170 (232)
T ss_dssp             ETTSSS---HHHHHHHHGGGEEEEE
T ss_pred             cCcHHH---HHHHHHHHHHhcCCCe
Confidence            765433   3444433  1455554

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.87  E-value=1.8e-09  Score=104.03  Aligned_cols=94  Identities=18%  Similarity=0.170  Sum_probs=72.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc--CCCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV--IHSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~Ii  365 (496)
                      .+.+|||||||+|..++.++... ..+|+|+|+|+.+++.++++....+   ..+++++++|++++...  ..++||+|+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---l~~v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG---LKGARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCceEEEECcHHHhhcccccCCCceEEE
Confidence            57899999999999999999875 4799999999999999988764433   45699999999987642  247899999


Q ss_pred             EccccccccchHhHhhe--eeecCCC
Q psy11730        366 TSETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       366 ~~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      +..+    .+...+++.  ..|.|+|
T Consensus       157 s~a~----~~~~~ll~~~~~~LkpgG  178 (249)
T 3g89_A          157 ARAV----APLCVLSELLLPFLEVGG  178 (249)
T ss_dssp             EESS----CCHHHHHHHHGGGEEEEE
T ss_pred             ECCc----CCHHHHHHHHHHHcCCCe
Confidence            9653    345555543  2455654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.87  E-value=3.8e-09  Score=98.05  Aligned_cols=92  Identities=18%  Similarity=0.208  Sum_probs=70.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.++..++... ..+|+|+|+|+.+++.++++....   ...++++..+|+.+...  .++||+|+++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~--~~~~D~i~~~  139 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL---KLENIEPVQSRVEEFPS--EPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---TCSSEEEEECCTTTSCC--CSCEEEEECS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCeEEEecchhhCCc--cCCcCEEEEe
Confidence            57899999999999999998864 479999999999999988765332   24459999999988763  5789999986


Q ss_pred             cccccccchHhHhhee--eecCCC
Q psy11730        368 ETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ..    .++..+++..  .|.|+|
T Consensus       140 ~~----~~~~~~l~~~~~~L~~gG  159 (207)
T 1jsx_A          140 AF----ASLNDMVSWCHHLPGEQG  159 (207)
T ss_dssp             CS----SSHHHHHHHHTTSEEEEE
T ss_pred             cc----CCHHHHHHHHHHhcCCCc
Confidence            53    4455666542  455554

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.86  E-value=8.1e-09  Score=96.46  Aligned_cols=94  Identities=15%  Similarity=0.109  Sum_probs=71.7

Q ss_pred             HHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        278 LLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       278 l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      +...+.+... .++.+|||||||+|.++..+++.+.  .+|+++|+|+.+++.++++....+   ..++++..+|+....
T Consensus        65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~  141 (215)
T 2yxe_A           65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG---YDNVIVIVGDGTLGY  141 (215)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEESCGGGCC
T ss_pred             HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCC
Confidence            3334444333 4578999999999999999998774  799999999999999887653322   356899999975432


Q ss_pred             ccCCCceeEEEEccccccccc
Q psy11730        355 AVIHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~~~  375 (496)
                      . ..++||+|++..+++++.+
T Consensus       142 ~-~~~~fD~v~~~~~~~~~~~  161 (215)
T 2yxe_A          142 E-PLAPYDRIYTTAAGPKIPE  161 (215)
T ss_dssp             G-GGCCEEEEEESSBBSSCCH
T ss_pred             C-CCCCeeEEEECCchHHHHH
Confidence            2 1468999999999998863

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.85  E-value=3.6e-09  Score=104.25  Aligned_cols=91  Identities=14%  Similarity=0.135  Sum_probs=72.9

Q ss_pred             HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..+++.|.+...+ ++.+|||||||+|.++..+++. ..+|+|+|+++.|++.++++..     ...+++++++|+.+++
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~-----~~~~v~vi~gD~l~~~  109 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKE-----LYNNIEIIWGDALKVD  109 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHH-----HCSSEEEEESCTTTSC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhc-----cCCCeEEEECchhhCC
Confidence            3455556555544 5789999999999999999987 4789999999999999887653     2468999999999876


Q ss_pred             ccCCCceeEEEEccccccc
Q psy11730        355 AVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .. ...||+|+++.+++..
T Consensus       110 ~~-~~~fD~Iv~NlPy~is  127 (295)
T 3gru_A          110 LN-KLDFNKVVANLPYQIS  127 (295)
T ss_dssp             GG-GSCCSEEEEECCGGGH
T ss_pred             cc-cCCccEEEEeCccccc
Confidence            54 3579999999887654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.85  E-value=2.7e-09  Score=107.17  Aligned_cols=99  Identities=21%  Similarity=0.228  Sum_probs=73.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC---CCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI---HSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~fD~Ii  365 (496)
                      ++.+|||+|||+|.+++.+++.+. +|+|+|+|+.|++.|+++...++ ....+++++++|+.++....   .+.||+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~g-l~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAG-LEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHT-CTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            567999999999999999999887 99999999999999987654332 11125999999988764321   46899999


Q ss_pred             Ecccccc----------ccchHhHhhee--eecCCC
Q psy11730        366 TSETIYS----------VANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       366 ~~~~l~~----------~~~~~~~~~~~--~l~p~~  389 (496)
                      ++++.+.          ..+...+++..  .|.|++
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG  266 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKA  266 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTC
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCc
Confidence            9888543          23445555542  456655

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.85  E-value=9.4e-09  Score=102.49  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=73.9

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      .+...+.+... .++.+|||||||+|.++..+++.+.  .+|+|+|+|+++++.|+++....   ...++++..+|+.+.
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---g~~~v~~~~~d~~~~  138 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL---GIENVIFVCGDGYYG  138 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGC
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---CCCCeEEEECChhhc
Confidence            44445544444 3578999999999999999998765  46999999999999998765332   245699999999875


Q ss_pred             cccCCCceeEEEEcccccccc
Q psy11730        354 SAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      ... .++||+|++..+++++.
T Consensus       139 ~~~-~~~fD~Iv~~~~~~~~~  158 (317)
T 1dl5_A          139 VPE-FSPYDVIFVTVGVDEVP  158 (317)
T ss_dssp             CGG-GCCEEEEEECSBBSCCC
T ss_pred             ccc-CCCeEEEEEcCCHHHHH
Confidence            442 57899999999999986

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.84  E-value=4.4e-09  Score=103.31  Aligned_cols=98  Identities=17%  Similarity=0.194  Sum_probs=74.0

Q ss_pred             ecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .+....+++.+.+... .++.+|||||||+|.+++.++.....+|+|+|+|+.+++.|+++....+  ...+++|+++|+
T Consensus       105 r~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~--l~~~v~~~~~D~  182 (284)
T 1nv8_A          105 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEF  182 (284)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESST
T ss_pred             ChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcc
Confidence            3455566666655432 2567999999999999999988844789999999999999988754332  233599999999


Q ss_pred             CCccccCCCce---eEEEEcccccccc
Q psy11730        351 GSLSAVIHSKF---DIILTSETIYSVA  374 (496)
Q Consensus       351 ~~~~~~~~~~f---D~Ii~~~~l~~~~  374 (496)
                      .+..   .++|   |+|++++++....
T Consensus       183 ~~~~---~~~f~~~D~IvsnPPyi~~~  206 (284)
T 1nv8_A          183 LEPF---KEKFASIEMILSNPPYVKSS  206 (284)
T ss_dssp             TGGG---GGGTTTCCEEEECCCCBCGG
T ss_pred             hhhc---ccccCCCCEEEEcCCCCCcc
Confidence            8743   2578   9999998876543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.83  E-value=4.4e-09  Score=102.38  Aligned_cols=90  Identities=16%  Similarity=0.024  Sum_probs=71.4

Q ss_pred             HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..+++.|.+...+ ++ +|||||||+|.++..+++.+ .+|+|+|+++.|++.++++..      ..+++++++|+.+++
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~------~~~v~vi~~D~l~~~  104 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLS------GLPVRLVFQDALLYP  104 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTT------TSSEEEEESCGGGSC
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcC------CCCEEEEECChhhCC
Confidence            3455555555443 46 99999999999999999987 689999999999999887642      258999999999876


Q ss_pred             ccCCCceeEEEEccccccc
Q psy11730        355 AVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~  373 (496)
                      ......+|.|+++.+++-.
T Consensus       105 ~~~~~~~~~iv~NlPy~is  123 (271)
T 3fut_A          105 WEEVPQGSLLVANLPYHIA  123 (271)
T ss_dssp             GGGSCTTEEEEEEECSSCC
T ss_pred             hhhccCccEEEecCccccc
Confidence            6422478999999987664

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.83  E-value=5.5e-09  Score=101.94  Aligned_cols=89  Identities=20%  Similarity=0.129  Sum_probs=74.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      +|.+|||+|||+|.+++.+|+.|.++|+|+|+|+.+++.++++...++  ...+++++++|..++..  .+.||.|++++
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~--v~~~v~~~~~D~~~~~~--~~~~D~Vi~~~  200 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG--ENIADRILMGY  200 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC--CSCEEEEEECC
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCcHHHhcc--ccCCCEEEECC
Confidence            588999999999999999999998899999999999999987764433  34679999999988764  57899999998


Q ss_pred             ccccccchHhHhh
Q psy11730        369 TIYSVANYNKLLT  381 (496)
Q Consensus       369 ~l~~~~~~~~~~~  381 (496)
                      +.....-++.+++
T Consensus       201 p~~~~~~l~~a~~  213 (278)
T 3k6r_A          201 VVRTHEFIPKALS  213 (278)
T ss_dssp             CSSGGGGHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            8766655555554

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.83  E-value=2.7e-09  Score=104.14  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=71.6

Q ss_pred             CCeEEEecCcCCH----HHHHHHHc-c----CCeEEEEeCCHHHHHHhcCcccccc-----------------c---C--
Q psy11730        290 KLSVLDVGCGAGL----LGLYTLMN-G----AAHVSFQDYNQEVIESLTLPNILMN-----------------T---D--  338 (496)
Q Consensus       290 ~~~VLDlGcGtG~----~~~~la~~-~----~~~v~giD~s~~~i~~a~~~~~~~~-----------------~---~--  338 (496)
                      +.+|||+|||||.    +++.+++. +    ..+|+|+|+|+.|++.|++......                 .   .  
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            4589999999998    66666664 3    2489999999999999987631100                 0   0  


Q ss_pred             ------CCCceEEEecccCCccccCCCceeEEEEccccccccch--HhHhhee--eecCCC
Q psy11730        339 ------NLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANY--NKLLTVW--CLFPTH  389 (496)
Q Consensus       339 ------~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~~--~l~p~~  389 (496)
                            ...+|.|.++|+.+.+....+.||+|+|..+++|+++.  ..+++..  .|.|+|
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG  246 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDG  246 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEE
T ss_pred             eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCc
Confidence                  01369999999987543224789999999999999655  5566542  566655

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.83  E-value=1.9e-09  Score=105.75  Aligned_cols=107  Identities=14%  Similarity=0.106  Sum_probs=71.5

Q ss_pred             cchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEE-eccc
Q psy11730        273 ECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY-HGDW  350 (496)
Q Consensus       273 ~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~-~~d~  350 (496)
                      ...+.|...|.... ..++++|||||||||.++..+++.|+.+|+|+|+|+.|++.+.++.        .++... ..++
T Consensus        68 rg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~--------~rv~~~~~~ni  139 (291)
T 3hp7_A           68 RGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD--------DRVRSMEQYNF  139 (291)
T ss_dssp             TTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC--------TTEEEECSCCG
T ss_pred             chHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cccceecccCc
Confidence            44556777776654 4568899999999999999999999899999999999998743321        112111 1222


Q ss_pred             CCccc--cCCCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730        351 GSLSA--VIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       351 ~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      ..+..  .+..+||+|++..+++++   ..++.+  ..|.|++.
T Consensus       140 ~~l~~~~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~  180 (291)
T 3hp7_A          140 RYAEPVDFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQ  180 (291)
T ss_dssp             GGCCGGGCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCE
T ss_pred             eecchhhCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCE
Confidence            22221  113459999998887755   445544  25666653

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.83  E-value=1.3e-09  Score=102.19  Aligned_cols=96  Identities=15%  Similarity=0.118  Sum_probs=69.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHh----cCcccccccCCCCceEEEecccCCccccCCCceeE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESL----TLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDI  363 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a----~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~  363 (496)
                      ++.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.+    +++..   .....+++++++|+++++.. .+. |.
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~---~~~~~~v~~~~~d~~~l~~~-~~~-d~  101 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPA---KGGLPNLLYLWATAERLPPL-SGV-GE  101 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGG---GTCCTTEEEEECCSTTCCSC-CCE-EE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhh---hcCCCceEEEecchhhCCCC-CCC-CE
Confidence            578999999999999999999874 7899999999988753    32221   12356899999999997763 344 66


Q ss_pred             EEE---ccccc--cccchHhHhhee--eecCCC
Q psy11730        364 ILT---SETIY--SVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       364 Ii~---~~~l~--~~~~~~~~~~~~--~l~p~~  389 (496)
                      |+.   ....+  |++++..++++.  .|.|++
T Consensus       102 v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  134 (218)
T 3mq2_A          102 LHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGA  134 (218)
T ss_dssp             EEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEE
T ss_pred             EEEEccchhhhhhhhccHHHHHHHHHHHcCCCc
Confidence            653   33332  666777777763  667765

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.82  E-value=5e-09  Score=101.19  Aligned_cols=91  Identities=12%  Similarity=0.157  Sum_probs=70.7

Q ss_pred             HHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..+++.|.+... .++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++...     ..+++++++|+.+++
T Consensus        15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~~~   88 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQFD   88 (255)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTTCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHhCC
Confidence            344555555544 357899999999999999999887 7899999999999998876521     468999999999876


Q ss_pred             ccC---CCceeEEEEccccccc
Q psy11730        355 AVI---HSKFDIILTSETIYSV  373 (496)
Q Consensus       355 ~~~---~~~fD~Ii~~~~l~~~  373 (496)
                      ...   ...|| |+++.+++-.
T Consensus        89 ~~~~~~~~~~~-vv~NlPY~is  109 (255)
T 3tqs_A           89 FSSVKTDKPLR-VVGNLPYNIS  109 (255)
T ss_dssp             GGGSCCSSCEE-EEEECCHHHH
T ss_pred             HHHhccCCCeE-EEecCCcccC
Confidence            532   24688 8888887543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.82  E-value=5.6e-09  Score=99.64  Aligned_cols=79  Identities=11%  Similarity=0.076  Sum_probs=63.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.+++.+++.++ .+|+|+|+++.+++.|+++...++  ...++++..+|..+.... ...||+|++.
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~I~v~~gD~l~~~~~-~~~~D~Ivia   97 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG--LTEQIDVRKGNGLAVIEK-KDAIDTIVIA   97 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG-GGCCCEEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEecchhhccCc-cccccEEEEe
Confidence            567999999999999999999986 689999999999999988764433  345799999998776542 2369999876


Q ss_pred             ccc
Q psy11730        368 ETI  370 (496)
Q Consensus       368 ~~l  370 (496)
                      .+.
T Consensus        98 gmG  100 (244)
T 3gnl_A           98 GMG  100 (244)
T ss_dssp             EEC
T ss_pred             CCc
Confidence            543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.81  E-value=5.3e-09  Score=99.24  Aligned_cols=94  Identities=11%  Similarity=-0.076  Sum_probs=66.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc--ccCCCceeEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS--AVIHSKFDII  364 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~I  364 (496)
                      ++.+|||||||+|.++..+++..  ..+|+|+|+|+.|++.+.+.+..     ..+++++.+|+.+..  ....++||+|
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-----~~~v~~~~~d~~~~~~~~~~~~~~D~V  151 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-----RTNIIPVIEDARHPHKYRMLIAMVDVI  151 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-----CTTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-----cCCeEEEEcccCChhhhcccCCcEEEE
Confidence            47799999999999999999873  37999999998877665544322     157999999998743  1125789999


Q ss_pred             EEccccccccchHhHhhe--eeecCCC
Q psy11730        365 LTSETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       365 i~~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      +++.+  .......++..  ..|.|++
T Consensus       152 ~~~~~--~~~~~~~~~~~~~~~LkpgG  176 (233)
T 2ipx_A          152 FADVA--QPDQTRIVALNAHTFLRNGG  176 (233)
T ss_dssp             EECCC--CTTHHHHHHHHHHHHEEEEE
T ss_pred             EEcCC--CccHHHHHHHHHHHHcCCCe
Confidence            99766  22222333432  2566655

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.81  E-value=6.3e-09  Score=98.47  Aligned_cols=80  Identities=15%  Similarity=-0.005  Sum_probs=65.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.+++.+++.++ .+|+|+|+++.+++.|+++...++  ...++++..+|..+.... ...||+|+..
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g--l~~~I~~~~gD~l~~~~~-~~~~D~Ivia   97 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG--LTSKIDVRLANGLSAFEE-ADNIDTITIC   97 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG-GGCCCEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhcccc-ccccCEEEEe
Confidence            577999999999999999999986 689999999999999988764433  345799999998876542 2479998876


Q ss_pred             cccc
Q psy11730        368 ETIY  371 (496)
Q Consensus       368 ~~l~  371 (496)
                      .+.-
T Consensus        98 GmGg  101 (230)
T 3lec_A           98 GMGG  101 (230)
T ss_dssp             EECH
T ss_pred             CCch
Confidence            5543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.81  E-value=1e-08  Score=99.24  Aligned_cols=90  Identities=14%  Similarity=0.166  Sum_probs=70.5

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+.+.+......++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.++++.        .++.+..+|+.+++.
T Consensus        73 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~  144 (269)
T 1p91_A           73 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--------PQVTFCVASSHRLPF  144 (269)
T ss_dssp             HHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--------TTSEEEECCTTSCSB
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcchhhCCC
Confidence            45555555443467899999999999999999874 468999999999999987643        467899999988765


Q ss_pred             cCCCceeEEEEccccccccc
Q psy11730        356 VIHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~  375 (496)
                      . +++||+|++..+...+..
T Consensus       145 ~-~~~fD~v~~~~~~~~l~~  163 (269)
T 1p91_A          145 S-DTSMDAIIRIYAPCKAEE  163 (269)
T ss_dssp             C-TTCEEEEEEESCCCCHHH
T ss_pred             C-CCceeEEEEeCChhhHHH
Confidence            4 579999999877554433

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.81  E-value=3.1e-09  Score=102.03  Aligned_cols=96  Identities=16%  Similarity=0.115  Sum_probs=68.6

Q ss_pred             HHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHc--c-CCeEEEEeCCHHHHHHhcCccccc---ccCCCCc--------
Q psy11730        278 LLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMN--G-AAHVSFQDYNQEVIESLTLPNILM---NTDNLEK--------  342 (496)
Q Consensus       278 l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~--~-~~~v~giD~s~~~i~~a~~~~~~~---~~~~~~~--------  342 (496)
                      +++.+..... ..+.+|||+|||+|.+++.+++.  . ..+|+|+|+|+.|++.|+++....   +.  ..+        
T Consensus        39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~--~~~~~~~~~~~  116 (250)
T 1o9g_A           39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL--TARELERREQS  116 (250)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc--cccchhhhhhh
Confidence            4444444432 35679999999999999999876  3 368999999999999988654322   10  001        


Q ss_pred             -----------------eE-------------EEecccCCcccc----CCCceeEEEEccccccccc
Q psy11730        343 -----------------CK-------------FYHGDWGSLSAV----IHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       343 -----------------v~-------------~~~~d~~~~~~~----~~~~fD~Ii~~~~l~~~~~  375 (496)
                                       ++             |.++|+.+....    ....||+|++++++.+...
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~  183 (250)
T 1o9g_A          117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTH  183 (250)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSS
T ss_pred             hhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecccc
Confidence                             56             999998875421    2458999999998877654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.80  E-value=5e-09  Score=100.02  Aligned_cols=84  Identities=10%  Similarity=0.018  Sum_probs=63.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCccccc---ccCCCCceEEEecccCC-ccc-cCCCcee
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILM---NTDNLEKCKFYHGDWGS-LSA-VIHSKFD  362 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~---~~~~~~~v~~~~~d~~~-~~~-~~~~~fD  362 (496)
                      ++.+|||||||+|.+++.+|+..+ ..|+|||+|+.|++.|+++....   ......|+.++.+|+.+ ++. ...++||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            456899999999999999998765 68999999999999887654221   11235689999999987 442 2268999


Q ss_pred             EEEEcccccc
Q psy11730        363 IILTSETIYS  372 (496)
Q Consensus       363 ~Ii~~~~l~~  372 (496)
                      .|++..+-.+
T Consensus       126 ~v~~~~~dp~  135 (235)
T 3ckk_A          126 KMFFLFPDPH  135 (235)
T ss_dssp             EEEEESCC--
T ss_pred             EEEEeCCCch
Confidence            9998655433

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.80  E-value=4.1e-09  Score=101.75  Aligned_cols=94  Identities=18%  Similarity=0.162  Sum_probs=72.2

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      ++....+++.+... ..++.+|||+|||+|.+++.+++.+. +|+|+|+++.+++.++++...++   .. +++..+|+.
T Consensus       104 ~~tt~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~---~~-v~~~~~d~~  177 (254)
T 2nxc_A          104 HETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNG---VR-PRFLEGSLE  177 (254)
T ss_dssp             SHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTT---CC-CEEEESCHH
T ss_pred             CHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcC---Cc-EEEEECChh
Confidence            44455566666654 34678999999999999999999887 99999999999999987654322   22 889999887


Q ss_pred             CccccCCCceeEEEEccccccc
Q psy11730        352 SLSAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      +..  ..++||+|+++.+.+++
T Consensus       178 ~~~--~~~~fD~Vv~n~~~~~~  197 (254)
T 2nxc_A          178 AAL--PFGPFDLLVANLYAELH  197 (254)
T ss_dssp             HHG--GGCCEEEEEEECCHHHH
T ss_pred             hcC--cCCCCCEEEECCcHHHH
Confidence            632  15789999998766543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.80  E-value=8.3e-09  Score=100.80  Aligned_cols=95  Identities=14%  Similarity=0.115  Sum_probs=74.1

Q ss_pred             CCeEEEecCcC---CHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc----------
Q psy11730        290 KLSVLDVGCGA---GLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA----------  355 (496)
Q Consensus       290 ~~~VLDlGcGt---G~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~----------  355 (496)
                      ..+|||||||+   |.++..+++..+ .+|+++|+|+.|++.++++..     ...+++++.+|+.+...          
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~-----~~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA-----KDPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT-----TCTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC-----CCCCeEEEEeeCCCchhhhccchhhcc
Confidence            47999999999   988877666544 699999999999999987652     23579999999976421          


Q ss_pred             cCCCceeEEEEccccccccc--hHhHhhee--eecCCC
Q psy11730        356 VIHSKFDIILTSETIYSVAN--YNKLLTVW--CLFPTH  389 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~--~~~~~~~~--~l~p~~  389 (496)
                      ....+||+|++..++||+++  ...+++++  .|.|++
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG  190 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGS  190 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTC
T ss_pred             CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCc
Confidence            11258999999999999987  77777763  455654

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.80  E-value=1.5e-08  Score=97.13  Aligned_cols=91  Identities=10%  Similarity=0.167  Sum_probs=71.1

Q ss_pred             hHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        275 TFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       275 ~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ...+++.+.+...+ ++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++..     ...+++++++|+.++
T Consensus        15 d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~-----~~~~v~~~~~D~~~~   88 (244)
T 1qam_A           15 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLV-----DHDNFQVLNKDILQF   88 (244)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTT-----TCCSEEEECCCGGGC
T ss_pred             CHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhc-----cCCCeEEEEChHHhC
Confidence            44566777776654 47899999999999999999887 789999999999999886542     135899999999987


Q ss_pred             cccCCCceeEEEEcccccc
Q psy11730        354 SAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~  372 (496)
                      +......| .|+++.+++.
T Consensus        89 ~~~~~~~~-~vv~nlPy~~  106 (244)
T 1qam_A           89 KFPKNQSY-KIFGNIPYNI  106 (244)
T ss_dssp             CCCSSCCC-EEEEECCGGG
T ss_pred             CcccCCCe-EEEEeCCccc
Confidence            65422345 6888887754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.80  E-value=8.7e-09  Score=97.96  Aligned_cols=94  Identities=13%  Similarity=0.143  Sum_probs=70.2

Q ss_pred             HHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        278 LLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       278 l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      ++..+.+... .++.+|||||||+|.++..+++.++.+|+++|+++.+++.++++....   ...++++..+|+. ....
T Consensus        79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~-~~~~  154 (235)
T 1jg1_A           79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA---GVKNVHVILGDGS-KGFP  154 (235)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGG-GCCG
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc---CCCCcEEEECCcc-cCCC
Confidence            3444444333 357799999999999999999877678999999999999988765332   2456899999973 2222


Q ss_pred             CCCceeEEEEccccccccc
Q psy11730        357 IHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~  375 (496)
                      ....||+|++..+++++.+
T Consensus       155 ~~~~fD~Ii~~~~~~~~~~  173 (235)
T 1jg1_A          155 PKAPYDVIIVTAGAPKIPE  173 (235)
T ss_dssp             GGCCEEEEEECSBBSSCCH
T ss_pred             CCCCccEEEECCcHHHHHH
Confidence            1346999999999988753

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.80  E-value=9e-09  Score=105.06  Aligned_cols=92  Identities=20%  Similarity=0.216  Sum_probs=72.3

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      ++..+......++.+|||+|||+|.+++.++..+. .+|+|+|+|+.|++.|+++....+  ...++++.++|+.+++..
T Consensus       206 la~~l~~~~~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g--l~~~i~~~~~D~~~~~~~  283 (373)
T 3tm4_A          206 IANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG--VLDKIKFIQGDATQLSQY  283 (373)
T ss_dssp             HHHHHHHHHTCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT--CGGGCEEEECCGGGGGGT
T ss_pred             HHHHHHHhhcCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhhCCcc
Confidence            44433333333578999999999999999998877 489999999999999988764332  236899999999998754


Q ss_pred             CCCceeEEEEcccccc
Q psy11730        357 IHSKFDIILTSETIYS  372 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~  372 (496)
                       .++||+|++++++..
T Consensus       284 -~~~fD~Ii~npPyg~  298 (373)
T 3tm4_A          284 -VDSVDFAISNLPYGL  298 (373)
T ss_dssp             -CSCEEEEEEECCCC-
T ss_pred             -cCCcCEEEECCCCCc
Confidence             578999999998654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.79  E-value=5.3e-09  Score=93.64  Aligned_cols=88  Identities=17%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             hHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        275 TFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       275 ~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      ...+.+.+.... ..++.+|||+|||+|.++..+++. ++ .+|+|+|+|+ ++.             ..++++..+|+.
T Consensus         7 ~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------------~~~~~~~~~d~~   72 (180)
T 1ej0_A            7 WFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------------IVGVDFLQGDFR   72 (180)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------------CTTEEEEESCTT
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------------cCcEEEEEcccc
Confidence            334555555443 235779999999999999999887 55 7999999998 643             246888999998


Q ss_pred             Cccc-------cCCCceeEEEEccccccccch
Q psy11730        352 SLSA-------VIHSKFDIILTSETIYSVANY  376 (496)
Q Consensus       352 ~~~~-------~~~~~fD~Ii~~~~l~~~~~~  376 (496)
                      +.+.       ...++||+|+++.++++..+.
T Consensus        73 ~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~  104 (180)
T 1ej0_A           73 DELVMKALLERVGDSKVQVVMSDMAPNMSGTP  104 (180)
T ss_dssp             SHHHHHHHHHHHTTCCEEEEEECCCCCCCSCH
T ss_pred             cchhhhhhhccCCCCceeEEEECCCccccCCC
Confidence            7641       125789999999998877655

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.78  E-value=9e-09  Score=97.22  Aligned_cols=79  Identities=13%  Similarity=0.005  Sum_probs=62.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.+++.+++.++ .+|+|+|+++.+++.|+++...++  ...++++..+|+.+.... ...||+|+..
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~i~~~~~d~l~~l~~-~~~~D~Ivia   91 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG--LKEKIQVRLANGLAAFEE-TDQVSVITIA   91 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG-GGCCCEEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECchhhhccc-CcCCCEEEEc
Confidence            567999999999999999999986 689999999999999988764443  345799999998543321 2369999876


Q ss_pred             ccc
Q psy11730        368 ETI  370 (496)
Q Consensus       368 ~~l  370 (496)
                      .+.
T Consensus        92 G~G   94 (225)
T 3kr9_A           92 GMG   94 (225)
T ss_dssp             EEC
T ss_pred             CCC
Confidence            553

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.78  E-value=1.1e-08  Score=100.39  Aligned_cols=93  Identities=19%  Similarity=0.142  Sum_probs=71.9

Q ss_pred             HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..+++.|.+...+ ++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++....+  ...+++++++|+.+++
T Consensus        14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~D~~~~~   90 (285)
T 1zq9_A           14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKTD   90 (285)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTSC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcceeccc
Confidence            3455555555543 57799999999999999999886 489999999999999887642211  1258999999998875


Q ss_pred             ccCCCceeEEEEcccccccc
Q psy11730        355 AVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      .   ..||+|+++.+++...
T Consensus        91 ~---~~fD~vv~nlpy~~~~  107 (285)
T 1zq9_A           91 L---PFFDTCVANLPYQISS  107 (285)
T ss_dssp             C---CCCSEEEEECCGGGHH
T ss_pred             c---hhhcEEEEecCcccch
Confidence            3   3799999998877654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.78  E-value=3.8e-09  Score=106.54  Aligned_cols=94  Identities=20%  Similarity=0.271  Sum_probs=73.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .+.+|||||||+|.++..+++.++ .+|+|+|+|+.|++.++++....+    .++.++.+|+.+..   .++||+|+++
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~d~~~~~---~~~fD~Iv~~  268 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG----VEGEVFASNVFSEV---KGRFDMIISN  268 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT----CCCEEEECSTTTTC---CSCEEEEEEC
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCEEEEccccccc---cCCeeEEEEC
Confidence            467999999999999999999887 599999999999999987654322    23677888877643   5789999999


Q ss_pred             ccccc-----ccchHhHhhe--eeecCCC
Q psy11730        368 ETIYS-----VANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       368 ~~l~~-----~~~~~~~~~~--~~l~p~~  389 (496)
                      +++++     ..+...+++.  ..|.|+|
T Consensus       269 ~~~~~g~~~~~~~~~~~l~~~~~~LkpgG  297 (343)
T 2pjd_A          269 PPFHDGMQTSLDAAQTLIRGAVRHLNSGG  297 (343)
T ss_dssp             CCCCSSSHHHHHHHHHHHHHHGGGEEEEE
T ss_pred             CCcccCccCCHHHHHHHHHHHHHhCCCCc
Confidence            99985     3455666665  3566665

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.77  E-value=1.7e-08  Score=95.25  Aligned_cols=89  Identities=18%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             HHHHHHHHh---CCCC-CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        276 FDLLNFIKD---NVAV-DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       276 ~~l~~~l~~---~~~~-~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      ..++..+..   ...+ ++.+|||+|||+|.++..+++. ++ .+|+|+|+|+.|++.++++...     ..+++++.+|
T Consensus        56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-----~~~v~~~~~d  130 (227)
T 1g8a_A           56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----RRNIVPILGD  130 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----CTTEEEEECC
T ss_pred             hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-----cCCCEEEEcc
Confidence            345555533   2323 4779999999999999999976 44 7999999999998887665422     2689999999


Q ss_pred             cCCccc--cCCCceeEEEEccc
Q psy11730        350 WGSLSA--VIHSKFDIILTSET  369 (496)
Q Consensus       350 ~~~~~~--~~~~~fD~Ii~~~~  369 (496)
                      +.+...  ...++||+|+++.+
T Consensus       131 ~~~~~~~~~~~~~~D~v~~~~~  152 (227)
T 1g8a_A          131 ATKPEEYRALVPKVDVIFEDVA  152 (227)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCC
T ss_pred             CCCcchhhcccCCceEEEECCC
Confidence            987431  22468999999766

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.77  E-value=1.3e-08  Score=99.18  Aligned_cols=77  Identities=14%  Similarity=0.052  Sum_probs=65.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||+|||+|.+++.+++.+ ..+|+|+|+|+.+++.|+++...++   ..++.++.+|+.+. .. .+.||+|+++
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~---l~~~~~~~~d~~~~-~~-~~~~D~Vi~d  193 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK---LNNVIPILADNRDV-EL-KDVADRVIMG  193 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT---CSSEEEEESCGGGC-CC-TTCEEEEEEC
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEECChHHc-Cc-cCCceEEEEC
Confidence            57899999999999999999875 4799999999999999987654432   45789999999887 33 5789999999


Q ss_pred             ccc
Q psy11730        368 ETI  370 (496)
Q Consensus       368 ~~l  370 (496)
                      ++.
T Consensus       194 ~p~  196 (272)
T 3a27_A          194 YVH  196 (272)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            886

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.76  E-value=7.5e-09  Score=106.10  Aligned_cols=90  Identities=13%  Similarity=0.017  Sum_probs=69.6

Q ss_pred             HHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCC-ceEEEecccCCcccc-
Q psy11730        279 LNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLE-KCKFYHGDWGSLSAV-  356 (496)
Q Consensus       279 ~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~-~v~~~~~d~~~~~~~-  356 (496)
                      ..++.+.. .++++|||+|||+|.+++.+++.++.+|+|+|+|+.|++.|+++...++  ... +++|+.+|+.+.... 
T Consensus       203 ~~~~~~~~-~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~--~~~~~v~~~~~D~~~~l~~~  279 (385)
T 2b78_A          203 RNELINGS-AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYA  279 (385)
T ss_dssp             HHHHHHTT-TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHH
T ss_pred             HHHHHHHh-cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHH
Confidence            33444332 4678999999999999999998888899999999999999987764432  122 899999998774321 


Q ss_pred             --CCCceeEEEEccccc
Q psy11730        357 --IHSKFDIILTSETIY  371 (496)
Q Consensus       357 --~~~~fD~Ii~~~~l~  371 (496)
                        ...+||+|+++++..
T Consensus       280 ~~~~~~fD~Ii~DPP~~  296 (385)
T 2b78_A          280 RRHHLTYDIIIIDPPSF  296 (385)
T ss_dssp             HHTTCCEEEEEECCCCC
T ss_pred             HHhCCCccEEEECCCCC
Confidence              135899999988874

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.75  E-value=1.8e-08  Score=102.78  Aligned_cols=98  Identities=13%  Similarity=0.188  Sum_probs=76.1

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCC-ccccCCCceeEE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGS-LSAVIHSKFDII  364 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~I  364 (496)
                      ..++++||||| |+|.+++.++..++ .+|+|+|+|+.|++.|+++....+   ..+++++.+|+.+ ++....++||+|
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g---~~~v~~~~~D~~~~l~~~~~~~fD~V  245 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG---YEDIEIFTFDLRKPLPDYALHKFDTF  245 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT---CCCEEEECCCTTSCCCTTTSSCBSEE
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCEEEEEChhhhhchhhccCCccEE
Confidence            34688999999 99999999998887 899999999999999988764433   2389999999988 543225689999


Q ss_pred             EEccccccccchHhHhhee--eecCCC
Q psy11730        365 LTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       365 i~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +++++++... ...+++..  .+.|++
T Consensus       246 i~~~p~~~~~-~~~~l~~~~~~LkpgG  271 (373)
T 2qm3_A          246 ITDPPETLEA-IRAFVGRGIATLKGPR  271 (373)
T ss_dssp             EECCCSSHHH-HHHHHHHHHHTBCSTT
T ss_pred             EECCCCchHH-HHHHHHHHHHHcccCC
Confidence            9999876553 45555442  556655

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.74  E-value=9.1e-09  Score=104.88  Aligned_cols=92  Identities=11%  Similarity=0.147  Sum_probs=71.9

Q ss_pred             HHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        276 FDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       276 ~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      ..+.+++.+.....+.+|||+|||+|.+++.+++ +..+|+|+|+|+.+++.|+++...++   ..+++|+.+|++++..
T Consensus       200 ~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng---~~~v~~~~~d~~~~~~  275 (369)
T 3bt7_A          200 IQMLEWALDVTKGSKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANH---IDNVQIIRMAAEEFTQ  275 (369)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTT---CCSEEEECCCSHHHHH
T ss_pred             HHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEECCHHHHHH
Confidence            3566677666666678999999999999999776 56799999999999999987654332   4689999999887642


Q ss_pred             cC-C--------------CceeEEEEccccc
Q psy11730        356 VI-H--------------SKFDIILTSETIY  371 (496)
Q Consensus       356 ~~-~--------------~~fD~Ii~~~~l~  371 (496)
                      .. .              ..||+|+++++..
T Consensus       276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~  306 (369)
T 3bt7_A          276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRS  306 (369)
T ss_dssp             HHSSCCCCTTGGGSCGGGCCEEEEEECCCTT
T ss_pred             HHhhccccccccccccccCCCCEEEECcCcc
Confidence            11 1              3799999998864

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.74  E-value=1.7e-08  Score=104.32  Aligned_cols=110  Identities=14%  Similarity=0.084  Sum_probs=74.0

Q ss_pred             HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHh-------cCcccccccCCCCceEEEec
Q psy11730        278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESL-------TLPNILMNTDNLEKCKFYHG  348 (496)
Q Consensus       278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a-------~~~~~~~~~~~~~~v~~~~~  348 (496)
                      ++..+.+...+ ++.+|||||||+|.+++.+++. +..+|+|+|+++.+++.|       +++....+ ....+++++.+
T Consensus       230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G-l~~~nV~~i~g  308 (433)
T 1u2z_A          230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG-MRLNNVEFSLK  308 (433)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT-BCCCCEEEEES
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC-CCCCceEEEEc
Confidence            33444444443 5789999999999999999986 446899999999999888       54432211 11368999987


Q ss_pred             ccC-Cc-cc-cCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        349 DWG-SL-SA-VIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       349 d~~-~~-~~-~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      |.. .. .. ...+.||+|+++.++ +.+++...++++  .|.|++
T Consensus       309 D~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG  353 (433)
T 1u2z_A          309 KSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGC  353 (433)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTC
T ss_pred             CccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCe
Confidence            533 21 11 114689999998776 446666666552  555655

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.74  E-value=1.2e-08  Score=97.96  Aligned_cols=96  Identities=11%  Similarity=0.080  Sum_probs=70.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC--CceeEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH--SKFDII  364 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~fD~I  364 (496)
                      ++++|||||||+|..++.+++..  ..+|+|+|+|+.+++.|+++....+  ...+++++.+|+.+......  ++||+|
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG--VDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            57899999999999999999864  4799999999999999987754332  33589999999877433222  489999


Q ss_pred             EEccccccccchHhHhhe--eeecCCC
Q psy11730        365 LTSETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       365 i~~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      ++....   .+...+++.  ..|.|++
T Consensus       141 ~~d~~~---~~~~~~l~~~~~~LkpGG  164 (248)
T 3tfw_A          141 FIDADK---PNNPHYLRWALRYSRPGT  164 (248)
T ss_dssp             EECSCG---GGHHHHHHHHHHTCCTTC
T ss_pred             EECCch---HHHHHHHHHHHHhcCCCe
Confidence            997653   333444443  2455654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.73  E-value=1e-08  Score=101.41  Aligned_cols=90  Identities=21%  Similarity=0.248  Sum_probs=66.4

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+++.+.+... .++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++....   ...+++++.+|+.+++.
T Consensus        29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~---~~~~v~~~~~D~~~~~~  104 (299)
T 2h1r_A           29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYE---GYNNLEVYEGDAIKTVF  104 (299)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHT---TCCCEEC----CCSSCC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHc---CCCceEEEECchhhCCc
Confidence            34455544443 357899999999999999988874 68999999999999988764322   23689999999988753


Q ss_pred             cCCCceeEEEEccccccc
Q psy11730        356 VIHSKFDIILTSETIYSV  373 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~  373 (496)
                         .+||+|+++.+++..
T Consensus       105 ---~~~D~Vv~n~py~~~  119 (299)
T 2h1r_A          105 ---PKFDVCTANIPYKIS  119 (299)
T ss_dssp             ---CCCSEEEEECCGGGH
T ss_pred             ---ccCCEEEEcCCcccc
Confidence               489999999887654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.73  E-value=1.8e-08  Score=104.95  Aligned_cols=96  Identities=22%  Similarity=0.204  Sum_probs=73.7

Q ss_pred             hHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        275 TFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       275 ~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      ...+++.+.+...+ .+.+|||+|||+|.+++.+++. ..+|+|+|+|+.|++.|+++...++   ..+++|+.+|+.+.
T Consensus       271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~---~~~v~f~~~d~~~~  346 (433)
T 1uwv_A          271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNG---LQNVTFYHENLEED  346 (433)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCTTSC
T ss_pred             HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEECCHHHH
Confidence            33456666555443 5679999999999999999887 5789999999999999987654332   45899999999874


Q ss_pred             cc---cCCCceeEEEEcccccccc
Q psy11730        354 SA---VIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       354 ~~---~~~~~fD~Ii~~~~l~~~~  374 (496)
                      ..   ...++||+|+++++..-..
T Consensus       347 l~~~~~~~~~fD~Vv~dPPr~g~~  370 (433)
T 1uwv_A          347 VTKQPWAKNGFDKVLLDPARAGAA  370 (433)
T ss_dssp             CSSSGGGTTCCSEEEECCCTTCCH
T ss_pred             hhhhhhhcCCCCEEEECCCCccHH
Confidence            32   1246899999999876553

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.71  E-value=2.9e-08  Score=95.56  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=69.8

Q ss_pred             HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..+++.|.+...+ ++.+|||||||+|.++..+++.+..+|+|+|+++.|++.++++       ...+++++++|+.+++
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-------~~~~v~~i~~D~~~~~   89 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-------GDERLEVINEDASKFP   89 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-------CCTTEEEECSCTTTCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-------cCCCeEEEEcchhhCC
Confidence            3455556555544 5789999999999999999988778999999999999999875       1357999999999876


Q ss_pred             ccCC-CceeEEEEccccccc
Q psy11730        355 AVIH-SKFDIILTSETIYSV  373 (496)
Q Consensus       355 ~~~~-~~fD~Ii~~~~l~~~  373 (496)
                      .... +.| .|+++.+++-.
T Consensus        90 ~~~~~~~~-~vv~NlPy~i~  108 (249)
T 3ftd_A           90 FCSLGKEL-KVVGNLPYNVA  108 (249)
T ss_dssp             GGGSCSSE-EEEEECCTTTH
T ss_pred             hhHccCCc-EEEEECchhcc
Confidence            5421 234 78888887543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.71  E-value=1.3e-08  Score=100.83  Aligned_cols=102  Identities=18%  Similarity=0.141  Sum_probs=71.8

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCcccc-CCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAV-IHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~-~~~~fD~I  364 (496)
                      .++++|||||||+|.++..+++.. ..+|+++|+++.+++.++++....+ .....+++++.+|+.+.... ..++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            357899999999999999998874 4799999999999999987653211 12356899999998876543 36789999


Q ss_pred             EEccccccccch----HhHhhe--eeecCCC
Q psy11730        365 LTSETIYSVANY----NKLLTV--WCLFPTH  389 (496)
Q Consensus       365 i~~~~l~~~~~~----~~~~~~--~~l~p~~  389 (496)
                      +++.+.++.+..    ..+++.  ..|.|+|
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG  204 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDG  204 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEE
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCc
Confidence            997766553322    334443  2566655

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.71  E-value=2.3e-08  Score=101.53  Aligned_cols=98  Identities=13%  Similarity=0.130  Sum_probs=75.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ...+|||||||+|.++..+++..+ .+++++|+ +.+++.++++....+  ...+++|..+|+.+......+.||+|++.
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~p~~~D~v~~~  255 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS--GSERIHGHGANLLDRDVPFPTGFDAVWMS  255 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT--TGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC--cccceEEEEccccccCCCCCCCcCEEEEe
Confidence            567999999999999999998765 68999999 999999887653221  23689999999987531113789999999


Q ss_pred             cccccccchH--hHhhee--eecCCC
Q psy11730        368 ETIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                      .++|++++.+  .++++.  .|.|++
T Consensus       256 ~vlh~~~~~~~~~~l~~~~~~L~pgG  281 (363)
T 3dp7_A          256 QFLDCFSEEEVISILTRVAQSIGKDS  281 (363)
T ss_dssp             SCSTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCc
Confidence            9999987654  456552  566655

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.71  E-value=2.6e-08  Score=100.83  Aligned_cols=94  Identities=18%  Similarity=0.111  Sum_probs=74.1

Q ss_pred             hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHcc-C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNG-A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      ...++..+..... .++.+|||+|||+|.+++.++..+ + .+|+|+|+++.|++.|+++....+   ..+++|.++|+.
T Consensus       188 ~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g---~~~i~~~~~D~~  264 (354)
T 3tma_A          188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG---LSWIRFLRADAR  264 (354)
T ss_dssp             CHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT---CTTCEEEECCGG
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC---CCceEEEeCChh
Confidence            3345555555444 357799999999999999999876 3 789999999999999988764432   238999999999


Q ss_pred             CccccCCCceeEEEEcccccc
Q psy11730        352 SLSAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~  372 (496)
                      +++.. ...||+|++++++..
T Consensus       265 ~~~~~-~~~~D~Ii~npPyg~  284 (354)
T 3tma_A          265 HLPRF-FPEVDRILANPPHGL  284 (354)
T ss_dssp             GGGGT-CCCCSEEEECCCSCC
T ss_pred             hCccc-cCCCCEEEECCCCcC
Confidence            98764 456899999998754

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.71  E-value=7.3e-09  Score=98.65  Aligned_cols=59  Identities=20%  Similarity=0.199  Sum_probs=47.8

Q ss_pred             chHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcc
Q psy11730        274 CTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN  332 (496)
Q Consensus       274 ~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~  332 (496)
                      ....|...|.... ...+++|||||||||.++..+++.++.+|+|+|+|+.|++.++++.
T Consensus        21 g~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           21 GGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             THHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC
T ss_pred             cHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC
Confidence            3455666666543 3567899999999999999999998789999999999998876543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.71  E-value=2.2e-08  Score=94.53  Aligned_cols=97  Identities=13%  Similarity=0.131  Sum_probs=71.4

Q ss_pred             chHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCC-CceEEEecc
Q psy11730        274 CTFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNL-EKCKFYHGD  349 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~-~~v~~~~~d  349 (496)
                      ....++..+...... ++.+|||||||+|..++.+++..  ..+|+++|+|+++++.|+++....+  .. .+++++.+|
T Consensus        40 ~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~~gd  117 (221)
T 3dr5_A           40 MTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFLLSR  117 (221)
T ss_dssp             HHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSC
T ss_pred             HHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEEEcC
Confidence            334455555544322 24599999999999999999853  3799999999999999987654332  23 589999999


Q ss_pred             cCCccccC-CCceeEEEEcccccc
Q psy11730        350 WGSLSAVI-HSKFDIILTSETIYS  372 (496)
Q Consensus       350 ~~~~~~~~-~~~fD~Ii~~~~l~~  372 (496)
                      +.+..... .++||+|++......
T Consensus       118 a~~~l~~~~~~~fD~V~~d~~~~~  141 (221)
T 3dr5_A          118 PLDVMSRLANDSYQLVFGQVSPMD  141 (221)
T ss_dssp             HHHHGGGSCTTCEEEEEECCCTTT
T ss_pred             HHHHHHHhcCCCcCeEEEcCcHHH
Confidence            87765433 579999999765443

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.70  E-value=2.5e-08  Score=94.29  Aligned_cols=83  Identities=22%  Similarity=0.122  Sum_probs=69.2

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ..+.+|||||||+|.+++.+.  +..+|+|+|+++.|++.++.....    ...+..+..+|....+.  .+.||+|++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~----~g~~~~~~v~D~~~~~~--~~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFARE----KDWDFTFALQDVLCAPP--AEAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHH----TTCEEEEEECCTTTSCC--CCBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHh----cCCCceEEEeecccCCC--CCCcchHHHH
Confidence            357899999999999999977  778999999999999999877432    24678889999887665  5799999999


Q ss_pred             cccccccchHh
Q psy11730        368 ETIYSVANYNK  378 (496)
Q Consensus       368 ~~l~~~~~~~~  378 (496)
                      -+++++++.+.
T Consensus       176 k~lh~LE~q~~  186 (253)
T 3frh_A          176 KLLPLLEREQA  186 (253)
T ss_dssp             SCHHHHHHHST
T ss_pred             HHHHHhhhhch
Confidence            99999965544

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.70  E-value=1.9e-08  Score=101.51  Aligned_cols=97  Identities=10%  Similarity=0.067  Sum_probs=76.1

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      +.+|||||||+|.++..+++..+ .+++++|+ +.+++.++++....  ....++++..+|+.+.+....+.||+|++..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~  256 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH--DLGGRVEFFEKNLLDARNFEGGAADVVMLND  256 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT--TCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc--CCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence            67999999999999999998766 68999999 88998887654322  2345799999999887522256799999999


Q ss_pred             ccccccch--HhHhhee--eecCCC
Q psy11730        369 TIYSVANY--NKLLTVW--CLFPTH  389 (496)
Q Consensus       369 ~l~~~~~~--~~~~~~~--~l~p~~  389 (496)
                      ++|++++.  ..+++..  .|.|++
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~pgG  281 (352)
T 3mcz_A          257 CLHYFDAREAREVIGHAAGLVKPGG  281 (352)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTEEEEE
T ss_pred             ccccCCHHHHHHHHHHHHHHcCCCC
Confidence            99999765  6666652  566654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.70  E-value=1.1e-08  Score=99.91  Aligned_cols=91  Identities=18%  Similarity=0.037  Sum_probs=64.4

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEE--ecc
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY--HGD  349 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~--~~d  349 (496)
                      ...+..|...+......++.+|||||||+|.++..+++.  .+|+|+|+++ |+..++++... ......++.|+  .+|
T Consensus        65 sR~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~-~~~~~~~v~~~~~~~D  140 (276)
T 2wa2_A           65 SRGTAKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRL-VETFGWNLITFKSKVD  140 (276)
T ss_dssp             CHHHHHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCC-CCCTTGGGEEEECSCC
T ss_pred             chHHHHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhh-hhhcCCCeEEEeccCc
Confidence            334555666555533345789999999999999998888  6899999998 64433332111 01112378999  899


Q ss_pred             cCCccccCCCceeEEEEccc
Q psy11730        350 WGSLSAVIHSKFDIILTSET  369 (496)
Q Consensus       350 ~~~~~~~~~~~fD~Ii~~~~  369 (496)
                      +.+++   +++||+|+|+.+
T Consensus       141 ~~~l~---~~~fD~Vvsd~~  157 (276)
T 2wa2_A          141 VTKME---PFQADTVLCDIG  157 (276)
T ss_dssp             GGGCC---CCCCSEEEECCC
T ss_pred             HhhCC---CCCcCEEEECCC
Confidence            88865   578999999877

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.70  E-value=1.3e-08  Score=98.94  Aligned_cols=93  Identities=17%  Similarity=0.072  Sum_probs=65.4

Q ss_pred             cchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEE--eccc
Q psy11730        273 ECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY--HGDW  350 (496)
Q Consensus       273 ~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~--~~d~  350 (496)
                      .++..|...+......++.+|||||||+|.++..+++.  .+|+|||+++ |+..+++.... ......++.++  ++|+
T Consensus        58 R~a~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~-~~~~~~~v~~~~~~~D~  133 (265)
T 2oxt_A           58 RGTAKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRI-TESYGWNIVKFKSRVDI  133 (265)
T ss_dssp             THHHHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCC-CCBTTGGGEEEECSCCT
T ss_pred             hHHHHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhh-hhccCCCeEEEecccCH
Confidence            34556666666633345789999999999999998887  6899999998 54333322111 01112378999  8999


Q ss_pred             CCccccCCCceeEEEEccccccc
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .+++   +++||+|+|+.+ ++.
T Consensus       134 ~~l~---~~~fD~V~sd~~-~~~  152 (265)
T 2oxt_A          134 HTLP---VERTDVIMCDVG-ESS  152 (265)
T ss_dssp             TTSC---CCCCSEEEECCC-CCC
T ss_pred             hHCC---CCCCcEEEEeCc-ccC
Confidence            8865   578999999876 443

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.69  E-value=9.2e-09  Score=96.77  Aligned_cols=96  Identities=13%  Similarity=-0.013  Sum_probs=69.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC-----Cce
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH-----SKF  361 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~f  361 (496)
                      ++.+|||||||+|..++.+++..  ..+|+++|+|+.+++.++++....+  ...+++++.+|+.+......     ++|
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG--LSDKIGLRLSPAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence            57799999999999999999863  4799999999999999987654332  23569999999866432212     789


Q ss_pred             eEEEEccccccccchHhHhhee--eecCCC
Q psy11730        362 DIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       362 D~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      |+|++....   .+...+++..  .|.|++
T Consensus       142 D~v~~~~~~---~~~~~~l~~~~~~L~pgG  168 (225)
T 3tr6_A          142 DLIYIDADK---ANTDLYYEESLKLLREGG  168 (225)
T ss_dssp             EEEEECSCG---GGHHHHHHHHHHHEEEEE
T ss_pred             cEEEECCCH---HHHHHHHHHHHHhcCCCc
Confidence            999987653   3334444431  455554

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.69  E-value=3e-08  Score=95.15  Aligned_cols=93  Identities=18%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc-c-CCeEEEEeCCHHHHHHhcCccccc-ccCCCCceEEEecccCCccccCCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN-G-AAHVSFQDYNQEVIESLTLPNILM-NTDNLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~-~-~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.++++.... +   ..++++..+|+.+.+.. .++||+|
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~~~~~-~~~~D~v  170 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLGKLEEAELE-EAAYDGV  170 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEESCGGGCCCC-TTCEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEECchhhcCCC-CCCcCEE
Confidence            35789999999999999999987 5 479999999999999998765332 2   46899999999876432 4789999


Q ss_pred             EEccccccccchHhHhhee--eecCCC
Q psy11730        365 LTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       365 i~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +++.     +++..+++..  .|.|++
T Consensus       171 ~~~~-----~~~~~~l~~~~~~L~~gG  192 (258)
T 2pwy_A          171 ALDL-----MEPWKVLEKAALALKPDR  192 (258)
T ss_dssp             EEES-----SCGGGGHHHHHHHEEEEE
T ss_pred             EECC-----cCHHHHHHHHHHhCCCCC
Confidence            9843     3444555432  455544

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.69  E-value=2.1e-08  Score=97.74  Aligned_cols=92  Identities=11%  Similarity=0.247  Sum_probs=68.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-c-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-G-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.++++.....  ...++++..+|+.+...  .++||+|++
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--g~~~v~~~~~d~~~~~~--~~~fD~Vi~  185 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY--DIGNVRTSRSDIADFIS--DQMYDAVIA  185 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS--CCTTEEEECSCTTTCCC--SCCEEEEEE
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECchhccCc--CCCccEEEE
Confidence            4779999999999999999887 3 4799999999999999887653320  14689999999887322  578999999


Q ss_pred             ccccccccchHhHhhee--eecCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +     ++++..+++..  .|.|++
T Consensus       186 ~-----~~~~~~~l~~~~~~LkpgG  205 (275)
T 1yb2_A          186 D-----IPDPWNHVQKIASMMKPGS  205 (275)
T ss_dssp             C-----CSCGGGSHHHHHHTEEEEE
T ss_pred             c-----CcCHHHHHHHHHHHcCCCC
Confidence            3     44555555542  455554

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.69  E-value=8.2e-08  Score=91.18  Aligned_cols=114  Identities=12%  Similarity=0.089  Sum_probs=76.1

Q ss_pred             eeeecchH-HHHHHHHhCCC---C-CCCeEEEecCcCCHHHHHHHHc-c-CCeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730        269 YKIWECTF-DLLNFIKDNVA---V-DKLSVLDVGCGAGLLGLYTLMN-G-AAHVSFQDYNQEVIESLTLPNILMNTDNLE  341 (496)
Q Consensus       269 ~~~~~~~~-~l~~~l~~~~~---~-~~~~VLDlGcGtG~~~~~la~~-~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~  341 (496)
                      |+.|.... .++..|.....   + +|.+|||||||+|.++..+++. + .++|+|+|+|+.|++.+.+.+..     ..
T Consensus        51 yr~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----r~  125 (232)
T 3id6_C           51 YREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----RP  125 (232)
T ss_dssp             EEECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----CT
T ss_pred             hhhhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cC
Confidence            66675533 45566655433   3 4789999999999999999875 3 36999999999986543322211     24


Q ss_pred             ceEEEecccCCcccc--CCCceeEEEEccccccccchHhHhh-e--eeecCCCC
Q psy11730        342 KCKFYHGDWGSLSAV--IHSKFDIILTSETIYSVANYNKLLT-V--WCLFPTHT  390 (496)
Q Consensus       342 ~v~~~~~d~~~~~~~--~~~~fD~Ii~~~~l~~~~~~~~~~~-~--~~l~p~~~  390 (496)
                      |+.++.+|+......  ..+.||+|+++.+.   ++...++. .  ..|.|+|.
T Consensus       126 nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~  176 (232)
T 3id6_C          126 NIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGD  176 (232)
T ss_dssp             TEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEE
T ss_pred             CeEEEEcccccchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeE
Confidence            799999998765421  24689999998664   34433332 2  24667653

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.69  E-value=1.6e-08  Score=95.83  Aligned_cols=96  Identities=13%  Similarity=0.196  Sum_probs=71.2

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--CCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--HSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~Ii  365 (496)
                      ++.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|+++....+  ...++.+..+|+.+.....  .+.||+|+
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG--LESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence            57799999999999999999876 3799999999999999987653322  2357999999988753322  46899999


Q ss_pred             EccccccccchHhHhhee--eecCCC
Q psy11730        366 TSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       366 ~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +..+..   +...+++..  .|.|++
T Consensus       132 ~~~~~~---~~~~~l~~~~~~L~pgG  154 (233)
T 2gpy_A          132 IDAAKG---QYRRFFDMYSPMVRPGG  154 (233)
T ss_dssp             EEGGGS---CHHHHHHHHGGGEEEEE
T ss_pred             ECCCHH---HHHHHHHHHHHHcCCCe
Confidence            987754   444444431  445544

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.68  E-value=1.5e-08  Score=95.29  Aligned_cols=96  Identities=13%  Similarity=0.035  Sum_probs=69.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC----CCcee
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI----HSKFD  362 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~fD  362 (496)
                      ++.+|||||||+|..+..+++..  ..+|+++|+++.+++.++++....+  ...+++++.+|+.+.....    .+.||
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN--LNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            57899999999999999999874  3689999999999999887654322  3356999999987543211    15799


Q ss_pred             EEEEccccccccchHhHhhe--eeecCCC
Q psy11730        363 IILTSETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       363 ~Ii~~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      +|++.....   ....+++.  ..|.|++
T Consensus       136 ~v~~d~~~~---~~~~~l~~~~~~L~pgG  161 (223)
T 3duw_A          136 FIFIDADKQ---NNPAYFEWALKLSRPGT  161 (223)
T ss_dssp             EEEECSCGG---GHHHHHHHHHHTCCTTC
T ss_pred             EEEEcCCcH---HHHHHHHHHHHhcCCCc
Confidence            999987643   33344443  1455554

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.68  E-value=5.6e-09  Score=100.14  Aligned_cols=89  Identities=13%  Similarity=0.124  Sum_probs=69.6

Q ss_pred             HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      +++.+.+...+ ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++..     ...+++++++|+.+++..
T Consensus        17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~-----~~~~v~~~~~D~~~~~~~   90 (245)
T 1yub_A           17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK-----LNTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT-----TCSEEEECCSCCTTTTCC
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc-----cCCceEEEECChhhcCcc
Confidence            44555554443 57799999999999999999887 789999999999998877642     246899999999987753


Q ss_pred             CCCceeEEEEccccccc
Q psy11730        357 IHSKFDIILTSETIYSV  373 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~  373 (496)
                      ..++| .|+++.+++..
T Consensus        91 ~~~~f-~vv~n~Py~~~  106 (245)
T 1yub_A           91 NKQRY-KIVGNIPYHLS  106 (245)
T ss_dssp             CSSEE-EEEEECCSSSC
T ss_pred             cCCCc-EEEEeCCcccc
Confidence            23678 88888886654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.67  E-value=1.7e-08  Score=98.48  Aligned_cols=125  Identities=13%  Similarity=0.038  Sum_probs=83.8

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc---CCCcee
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV---IHSKFD  362 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD  362 (496)
                      .++.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.++++....+   ..+++++.+|+.++...   ..+.||
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~~~~~~~~~~~fD  158 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG---VLNTIIINADMRKYKDYLLKNEIFFD  158 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC---CCcEEEEeCChHhcchhhhhccccCC
Confidence            35789999999999999999874  33799999999999999887654332   45899999998876542   156899


Q ss_pred             EEEEccccccc------------------cchHhHhhe--eeecCCCCCcccEEEeeccCCcccccccchhhHhcC
Q psy11730        363 IILTSETIYSV------------------ANYNKLLTV--WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYP  418 (496)
Q Consensus       363 ~Ii~~~~l~~~------------------~~~~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (496)
                      +|+++.+....                  .....+++.  ..+.|+|.   +++.............+.++...++
T Consensus       159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~---lv~stcs~~~~ene~~v~~~l~~~~  231 (274)
T 3ajd_A          159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGE---LVYSTCSMEVEENEEVIKYILQKRN  231 (274)
T ss_dssp             EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEE---EEEEESCCCTTSSHHHHHHHHHHCS
T ss_pred             EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCE---EEEEECCCChHHhHHHHHHHHHhCC
Confidence            99998665432                  223344443  25666653   3443332233334555666655444

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.67  E-value=3.6e-08  Score=94.38  Aligned_cols=80  Identities=14%  Similarity=0.163  Sum_probs=62.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc---cC--CCCceEEEecccCC-ccc-cCCCc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN---TD--NLEKCKFYHGDWGS-LSA-VIHSK  360 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~---~~--~~~~v~~~~~d~~~-~~~-~~~~~  360 (496)
                      ++.+|||||||+|.+++.+++.++ ..|+|+|+|+.|++.++++.....   ..  ...++.++.+|+.+ ++. ...+.
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            467999999999999999999887 589999999999999877643321   00  34689999999887 432 22578


Q ss_pred             eeEEEEcc
Q psy11730        361 FDIILTSE  368 (496)
Q Consensus       361 fD~Ii~~~  368 (496)
                      +|.|+...
T Consensus       129 ~d~v~~~~  136 (246)
T 2vdv_E          129 LSKMFFCF  136 (246)
T ss_dssp             EEEEEEES
T ss_pred             cCEEEEEC
Confidence            99998654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.67  E-value=2.2e-08  Score=102.97  Aligned_cols=83  Identities=25%  Similarity=0.279  Sum_probs=67.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCC-CCceEEEecccCCccccC---CCceeE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDN-LEKCKFYHGDWGSLSAVI---HSKFDI  363 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~---~~~fD~  363 (496)
                      .++++|||+|||+|.+++.+++.|..+|+|+|+|+.+++.|+++...++  . ..+++|+.+|+.+.....   ...||+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ng--l~~~~v~~~~~D~~~~~~~~~~~~~~fD~  296 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence            3688999999999999999999888899999999999999987764332  1 228999999988764321   368999


Q ss_pred             EEEcccccc
Q psy11730        364 ILTSETIYS  372 (496)
Q Consensus       364 Ii~~~~l~~  372 (496)
                      |+++++...
T Consensus       297 Ii~dpP~~~  305 (396)
T 3c0k_A          297 IVMDPPKFV  305 (396)
T ss_dssp             EEECCSSTT
T ss_pred             EEECCCCCC
Confidence            999987643

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.67  E-value=5.6e-08  Score=91.46  Aligned_cols=86  Identities=19%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-C-CeEEEEeCCHHHHHHhcCccccccc--CCCCceEEEecccCCccccCCCceeE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-A-AHVSFQDYNQEVIESLTLPNILMNT--DNLEKCKFYHGDWGSLSAVIHSKFDI  363 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~  363 (496)
                      .++.+|||||||+|..+..+++.. . .+|+|+|+|+.+++.++++....+.  ....++.+..+|+...... .+.||+
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~  154 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-EAPYDA  154 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-GCCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc-CCCcCE
Confidence            357899999999999999998874 4 5999999999999998876533210  0135799999998765432 568999


Q ss_pred             EEEcccccccc
Q psy11730        364 ILTSETIYSVA  374 (496)
Q Consensus       364 Ii~~~~l~~~~  374 (496)
                      |++..+++++.
T Consensus       155 i~~~~~~~~~~  165 (226)
T 1i1n_A          155 IHVGAAAPVVP  165 (226)
T ss_dssp             EEECSBBSSCC
T ss_pred             EEECCchHHHH
Confidence            99998887663

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.66  E-value=3.8e-08  Score=100.11  Aligned_cols=95  Identities=17%  Similarity=0.124  Sum_probs=74.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.++..+++..+ .+++++|+ +.+++.++++....+  ...+++|..+|+.+. .  ...||+|++.
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~-~--~~~~D~v~~~  255 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFKP-L--PVTADVVLLS  255 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTSC-C--SCCEEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCCc-C--CCCCCEEEEe
Confidence            467999999999999999998875 68999999 999999887653322  234899999998752 2  2349999999


Q ss_pred             cccccccchH--hHhhee--eecCCC
Q psy11730        368 ETIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                      .++|++++..  .+++..  .|.|++
T Consensus       256 ~vl~~~~~~~~~~~l~~~~~~L~pgG  281 (374)
T 1qzz_A          256 FVLLNWSDEDALTILRGCVRALEPGG  281 (374)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             ccccCCCHHHHHHHHHHHHHhcCCCc
Confidence            9999998775  566652  566654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.66  E-value=2.2e-08  Score=95.58  Aligned_cols=90  Identities=14%  Similarity=0.104  Sum_probs=67.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc----c-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc---cccCCCc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN----G-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL---SAVIHSK  360 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~----~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~  360 (496)
                      ++.+|||||||+|..+..+++.    + ..+|+|||+|++|++.|+.        ...+++++++|+.+.   +.....+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~--------~~~~v~~~~gD~~~~~~l~~~~~~~  152 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSDLTTFEHLREMA  152 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSCSGGGGGGSSSC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc--------cCCceEEEECcchhHHHHHhhccCC
Confidence            4679999999999999999886    3 3799999999999887761        136899999999885   3322347


Q ss_pred             eeEEEEccccccccchHhHhhee---eecCCC
Q psy11730        361 FDIILTSETIYSVANYNKLLTVW---CLFPTH  389 (496)
Q Consensus       361 fD~Ii~~~~l~~~~~~~~~~~~~---~l~p~~  389 (496)
                      ||+|++...  | .+...++..+   .|.|++
T Consensus       153 fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG  181 (236)
T 2bm8_A          153 HPLIFIDNA--H-ANTFNIMKWAVDHLLEEGD  181 (236)
T ss_dssp             SSEEEEESS--C-SSHHHHHHHHHHHTCCTTC
T ss_pred             CCEEEECCc--h-HhHHHHHHHHHHhhCCCCC
Confidence            999998665  3 2566666642   466665

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.66  E-value=1.2e-08  Score=105.03  Aligned_cols=82  Identities=23%  Similarity=0.169  Sum_probs=67.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc---CCCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV---IHSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~Ii  365 (496)
                      ++++|||+|||+|.+++.+++.|..+|+|+|+|+.+++.|+++...++  ...+++|+.+|+.+....   ...+||+|+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi  294 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNG--VEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  294 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence            678999999999999999999888899999999999999987764432  123899999998776432   146899999


Q ss_pred             Ecccccc
Q psy11730        366 TSETIYS  372 (496)
Q Consensus       366 ~~~~l~~  372 (496)
                      ++++.+.
T Consensus       295 ~dpP~~~  301 (396)
T 2as0_A          295 LDPPAFV  301 (396)
T ss_dssp             ECCCCSC
T ss_pred             ECCCCCC
Confidence            9988654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.66  E-value=2.7e-08  Score=99.59  Aligned_cols=104  Identities=21%  Similarity=0.114  Sum_probs=77.9

Q ss_pred             HHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730        280 NFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH  358 (496)
Q Consensus       280 ~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  358 (496)
                      ..+.+..++.+.+|||||||+|.++..+++..+ .+++++|+ +.+++.++++....+  ...++++..+|+.+ +.  .
T Consensus       158 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~--~  231 (334)
T 2ip2_A          158 HEIPRLLDFRGRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL--AGERVSLVGGDMLQ-EV--P  231 (334)
T ss_dssp             HHHHHHSCCTTCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH--HTTSEEEEESCTTT-CC--C
T ss_pred             HHHHHhCCCCCCEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC--CCCcEEEecCCCCC-CC--C
Confidence            334333343448999999999999999998765 68999999 999999887643221  23579999999877 32  4


Q ss_pred             CceeEEEEccccccccchH--hHhhee--eecCCC
Q psy11730        359 SKFDIILTSETIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       359 ~~fD~Ii~~~~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                      +.||+|++..++|++++..  .+++..  .|.|++
T Consensus       232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG  266 (334)
T 2ip2_A          232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDG  266 (334)
T ss_dssp             SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTC
T ss_pred             CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCC
Confidence            6799999999999987665  666653  556654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.65  E-value=1.5e-08  Score=94.50  Aligned_cols=95  Identities=17%  Similarity=0.143  Sum_probs=69.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ++++|||||||+|..++.+++..  ..+|+++|+|+.+++.|+++....+  ...+++++.+|+.+......+ ||+|++
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~-fD~v~~  132 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG--LIDRVELQVGDPLGIAAGQRD-IDILFM  132 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS--GGGGEEEEESCHHHHHTTCCS-EEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCceEEEEEecHHHHhccCCC-CCEEEE
Confidence            56799999999999999998864  3689999999999999987654322  235799999998765332246 999999


Q ss_pred             ccccccccchHhHhhee--eecCCC
Q psy11730        367 SETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ....   .+...+++..  .|.|++
T Consensus       133 ~~~~---~~~~~~l~~~~~~LkpgG  154 (210)
T 3c3p_A          133 DCDV---FNGADVLERMNRCLAKNA  154 (210)
T ss_dssp             ETTT---SCHHHHHHHHGGGEEEEE
T ss_pred             cCCh---hhhHHHHHHHHHhcCCCe
Confidence            7442   3444555442  455554

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.65  E-value=3.3e-08  Score=98.89  Aligned_cols=96  Identities=18%  Similarity=0.222  Sum_probs=74.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.++..+++..+ .+++++|++ .+++.++++....+  ...+++|..+|+.+.+.  ...||+|++.
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--~~~~D~v~~~  239 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG--VASRYHTIAGSAFEVDY--GNDYDLVLLP  239 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT--CGGGEEEEESCTTTSCC--CSCEEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC--CCcceEEEecccccCCC--CCCCcEEEEc
Confidence            567999999999999999998754 689999999 99999887643322  23479999999987643  3459999999


Q ss_pred             cccccccch--HhHhhee--eecCCC
Q psy11730        368 ETIYSVANY--NKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~--~~~~~~~--~l~p~~  389 (496)
                      .+++++++.  ..+++..  .+.|++
T Consensus       240 ~~l~~~~~~~~~~~l~~~~~~L~pgG  265 (335)
T 2r3s_A          240 NFLHHFDVATCEQLLRKIKTALAVEG  265 (335)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             chhccCCHHHHHHHHHHHHHhCCCCc
Confidence            999999544  5666652  455654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.65  E-value=7e-08  Score=98.24  Aligned_cols=105  Identities=14%  Similarity=0.153  Sum_probs=79.3

Q ss_pred             HHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        279 LNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       279 ~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      +..+.+..+. .+.+|||||||+|.++..+++..+ .+++++|+ +.+++.++++....  +...+++|..+|+.+ +. 
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~l~~~v~~~~~d~~~-~~-  265 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR--GLADRCEILPGDFFE-TI-  265 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--TCTTTEEEEECCTTT-CC-
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc--CcCCceEEeccCCCC-CC-
Confidence            3444444443 467999999999999999998866 68999999 99999988765332  234689999999873 22 


Q ss_pred             CCCceeEEEEccccccccchH--hHhhee--eecCCC
Q psy11730        357 IHSKFDIILTSETIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                       ...||+|++..+++++++..  .+++..  .|.|++
T Consensus       266 -p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG  301 (369)
T 3gwz_A          266 -PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDS  301 (369)
T ss_dssp             -CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTC
T ss_pred             -CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCC
Confidence             23899999999999998876  566652  555654

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=98.65  E-value=9.2e-08  Score=98.95  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=32.4

Q ss_pred             CchhhhccCCceeeeCCcceEEEEeee--eeEEEeecccC
Q psy11730        430 KPLELVQGPGETVFVPGGWWHVVLNLD--TTVAVTQNFCS  467 (496)
Q Consensus       430 ~p~e~~~~~Ge~l~iP~gWwh~v~~l~--~~i~v~~~~~~  467 (496)
                      ..++++++|||+||||.||||++.+++  .|+.+|+.+..
T Consensus       226 p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~  265 (489)
T 4diq_A          226 PVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQ  265 (489)
T ss_dssp             CSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECT
T ss_pred             cceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccC
Confidence            457899999999999999999999995  57777776543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.65  E-value=5.3e-09  Score=100.26  Aligned_cols=96  Identities=18%  Similarity=0.109  Sum_probs=70.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-----CCce
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-----HSKF  361 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~f  361 (496)
                      ++++|||||||+|..++.+++..  ..+|+++|+++++++.|+++....+  ...+++++.+|+.+.....     .++|
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~~~~~~~~~~~f  137 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK--QEHKIKLRLGPALDTLHSLLNEGGEHQF  137 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT--CTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence            57899999999999999999864  3799999999999988876653322  3468999999987754432     4789


Q ss_pred             eEEEEccccccccchHhHhhe--eeecCCC
Q psy11730        362 DIILTSETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       362 D~Ii~~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      |+|++....   .+...+++.  ..|.|+|
T Consensus       138 D~V~~d~~~---~~~~~~l~~~~~~LkpGG  164 (242)
T 3r3h_A          138 DFIFIDADK---TNYLNYYELALKLVTPKG  164 (242)
T ss_dssp             EEEEEESCG---GGHHHHHHHHHHHEEEEE
T ss_pred             eEEEEcCCh---HHhHHHHHHHHHhcCCCe
Confidence            999997653   333344433  1455554

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.65  E-value=3.6e-08  Score=92.84  Aligned_cols=84  Identities=14%  Similarity=0.127  Sum_probs=66.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC------CeEEEEeCCHHHHHHhcCccccccc--CCCCceEEEecccCCcc----cc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA------AHVSFQDYNQEVIESLTLPNILMNT--DNLEKCKFYHGDWGSLS----AV  356 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~------~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~v~~~~~d~~~~~----~~  356 (496)
                      ++.+|||||||+|.++..+++...      .+|+|+|+++.+++.++++....+.  ....++++..+|+.+..    ..
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  159 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE  159 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence            578999999999999999988753      5899999999999999876533220  01457999999988753    22


Q ss_pred             CCCceeEEEEccccccc
Q psy11730        357 IHSKFDIILTSETIYSV  373 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~  373 (496)
                       .++||+|++..+++++
T Consensus       160 -~~~fD~I~~~~~~~~~  175 (227)
T 2pbf_A          160 -LGLFDAIHVGASASEL  175 (227)
T ss_dssp             -HCCEEEEEECSBBSSC
T ss_pred             -CCCcCEEEECCchHHH
Confidence             4789999999998876

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.65  E-value=7.7e-09  Score=100.08  Aligned_cols=82  Identities=15%  Similarity=0.118  Sum_probs=62.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCH-------HHHHHhcCcccccccCCCCceEEEecccCCccc-cCC--
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQ-------EVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIH--  358 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~-------~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~--  358 (496)
                      ++.+|||+|||+|.+++.++..+ .+|+|+|+|+       .+++.++++...++  ...+++++++|+.++.. ..+  
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~--~~~ri~~~~~d~~~~l~~~~~~~  159 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQD--TAARINLHFGNAAEQMPALVKTQ  159 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHH--HHTTEEEEESCHHHHHHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhC--CccCeEEEECCHHHHHHhhhccC
Confidence            46799999999999999999875 5899999999       99998876543222  12359999999987533 212  


Q ss_pred             CceeEEEEccccccc
Q psy11730        359 SKFDIILTSETIYSV  373 (496)
Q Consensus       359 ~~fD~Ii~~~~l~~~  373 (496)
                      ++||+|++++++.+.
T Consensus       160 ~~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          160 GKPDIVYLDPMYPER  174 (258)
T ss_dssp             CCCSEEEECCCC---
T ss_pred             CCccEEEECCCCCCc
Confidence            689999999988664

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.64  E-value=6.1e-08  Score=98.17  Aligned_cols=103  Identities=13%  Similarity=0.080  Sum_probs=77.9

Q ss_pred             HHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730        281 FIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH  358 (496)
Q Consensus       281 ~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  358 (496)
                      .+.+... .++.+|||||||+|.++..+++..+ .+++++|+ +.+++.++++....+  ...+++++.+|+.+.+.   
T Consensus       181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~---  254 (359)
T 1x19_A          181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESY---  254 (359)
T ss_dssp             HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CTTTEEEEECCTTTSCC---
T ss_pred             HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC--CCCCEEEEeCccccCCC---
Confidence            3333333 3467999999999999999998865 68999999 999999887653322  23469999999987643   


Q ss_pred             CceeEEEEccccccccc--hHhHhhee--eecCCC
Q psy11730        359 SKFDIILTSETIYSVAN--YNKLLTVW--CLFPTH  389 (496)
Q Consensus       359 ~~fD~Ii~~~~l~~~~~--~~~~~~~~--~l~p~~  389 (496)
                      ..+|+|++..+++++++  ...+++..  .|.|++
T Consensus       255 ~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG  289 (359)
T 1x19_A          255 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGG  289 (359)
T ss_dssp             CCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTC
T ss_pred             CCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCC
Confidence            23499999999999987  66677652  555654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.64  E-value=7.1e-08  Score=92.53  Aligned_cols=100  Identities=12%  Similarity=0.072  Sum_probs=72.0

Q ss_pred             HHHhCCC-CCCCeEEEecCcCCHHHHHHHHc-c-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        281 FIKDNVA-VDKLSVLDVGCGAGLLGLYTLMN-G-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       281 ~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~-~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      .+..... .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|+++....+  ...++++..+|+.+...  
T Consensus        84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--  159 (255)
T 3mb5_A           84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG--FDDRVTIKLKDIYEGIE--  159 (255)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT--CTTTEEEECSCGGGCCC--
T ss_pred             HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC--CCCceEEEECchhhccC--
Confidence            3333333 35789999999999999999987 5 4799999999999999987654332  23459999999886532  


Q ss_pred             CCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        358 HSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      .++||+|+++.+     ++..+++..  .|.|++
T Consensus       160 ~~~~D~v~~~~~-----~~~~~l~~~~~~L~~gG  188 (255)
T 3mb5_A          160 EENVDHVILDLP-----QPERVVEHAAKALKPGG  188 (255)
T ss_dssp             CCSEEEEEECSS-----CGGGGHHHHHHHEEEEE
T ss_pred             CCCcCEEEECCC-----CHHHHHHHHHHHcCCCC
Confidence            578999999643     344444431  455554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.63  E-value=4e-08  Score=108.09  Aligned_cols=92  Identities=12%  Similarity=0.068  Sum_probs=71.7

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      ....++...  .++++|||+|||+|.+++.++..|+.+|+++|+|+.+++.++++...++ ....+++++++|+.+....
T Consensus       529 ~~r~~l~~~--~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ng-l~~~~v~~i~~D~~~~l~~  605 (703)
T 3v97_A          529 IARRMLGQM--SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNG-LTGRAHRLIQADCLAWLRE  605 (703)
T ss_dssp             HHHHHHHHH--CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-CCSTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHh--cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHh
Confidence            334444432  3688999999999999999999888899999999999999987764432 2225899999998875433


Q ss_pred             CCCceeEEEEccccc
Q psy11730        357 IHSKFDIILTSETIY  371 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~  371 (496)
                      ..++||+|+++++..
T Consensus       606 ~~~~fD~Ii~DPP~f  620 (703)
T 3v97_A          606 ANEQFDLIFIDPPTF  620 (703)
T ss_dssp             CCCCEEEEEECCCSB
T ss_pred             cCCCccEEEECCccc
Confidence            357899999988753

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.63  E-value=5.4e-08  Score=97.41  Aligned_cols=94  Identities=14%  Similarity=-0.010  Sum_probs=74.3

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ..+|||||||+|.++..+++..+ .+++++|+ +.+++.++++....  +...+++|..+|+.+ +.  ...||+|++..
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~-~~--p~~~D~v~~~~  243 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT--GLSGRAQVVVGSFFD-PL--PAGAGGYVLSA  243 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--TCTTTEEEEECCTTS-CC--CCSCSEEEEES
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc--CcCcCeEEecCCCCC-CC--CCCCcEEEEeh
Confidence            57999999999999999988765 68999999 99999988764332  234689999999873 22  23899999999


Q ss_pred             ccccccch--HhHhhee--eecCCC
Q psy11730        369 TIYSVANY--NKLLTVW--CLFPTH  389 (496)
Q Consensus       369 ~l~~~~~~--~~~~~~~--~l~p~~  389 (496)
                      ++|++++.  ..++++.  .|.|++
T Consensus       244 vlh~~~~~~~~~~l~~~~~~L~pgG  268 (332)
T 3i53_A          244 VLHDWDDLSAVAILRRCAEAAGSGG  268 (332)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHTTTC
T ss_pred             hhccCCHHHHHHHHHHHHHhcCCCC
Confidence            99999885  6666653  566665

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.63  E-value=2.3e-08  Score=96.01  Aligned_cols=97  Identities=16%  Similarity=0.077  Sum_probs=71.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC------CCc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI------HSK  360 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~  360 (496)
                      ++++|||||||+|..++.+++..  ..+|+++|+|+.+++.|+++....+  ...+++++.+|+.+.....      .++
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            57799999999999999999864  3799999999999999987654322  2458999999987653221      478


Q ss_pred             eeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730        361 FDIILTSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       361 fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      ||+|++....   .+...+++.  ..|.|++.
T Consensus       157 fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~  185 (247)
T 1sui_A          157 YDFIFVDADK---DNYLNYHKRLIDLVKVGGV  185 (247)
T ss_dssp             BSEEEECSCS---TTHHHHHHHHHHHBCTTCC
T ss_pred             EEEEEEcCch---HHHHHHHHHHHHhCCCCeE
Confidence            9999997653   334444443  14566653

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.62  E-value=9.2e-08  Score=88.13  Aligned_cols=86  Identities=19%  Similarity=0.296  Sum_probs=63.8

Q ss_pred             chHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHcc---CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        274 CTFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNG---AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~---~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      ++..|.+.+.....+ ++.+|||||||+|.++..+++..   ..+|+|+|+|+.+              ...+++++++|
T Consensus         6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------------~~~~v~~~~~d   71 (201)
T 2plw_A            6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------------PIPNVYFIQGE   71 (201)
T ss_dssp             THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------------CCTTCEEEECC
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------------CCCCceEEEcc
Confidence            455666666554433 46799999999999999999875   3789999999831              13468889999


Q ss_pred             cCCccc------------------------cCCCceeEEEEccccccc
Q psy11730        350 WGSLSA------------------------VIHSKFDIILTSETIYSV  373 (496)
Q Consensus       350 ~~~~~~------------------------~~~~~fD~Ii~~~~l~~~  373 (496)
                      +.+...                        ....+||+|+++.++++.
T Consensus        72 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~  119 (201)
T 2plw_A           72 IGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCI  119 (201)
T ss_dssp             TTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred             ccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCC
Confidence            887650                        124689999998887763

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.62  E-value=3.2e-08  Score=97.72  Aligned_cols=78  Identities=17%  Similarity=0.174  Sum_probs=63.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC----CCceeE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI----HSKFDI  363 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~fD~  363 (496)
                      ++.+|||+|||+|.++..+++.. ..+|+|+|.|+.|++.|+++....+    .+++++++|+.+++...    ...||.
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g----~~v~~v~~d~~~l~~~l~~~g~~~~D~  101 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADFLLKTLGIEKVDG  101 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCHHHHHHHHHhcCCCCCCE
Confidence            57899999999999999999876 4799999999999999987654321    58999999998875321    158999


Q ss_pred             EEEcccc
Q psy11730        364 ILTSETI  370 (496)
Q Consensus       364 Ii~~~~l  370 (496)
                      |+++..+
T Consensus       102 Vl~D~gv  108 (301)
T 1m6y_A          102 ILMDLGV  108 (301)
T ss_dssp             EEEECSC
T ss_pred             EEEcCcc
Confidence            9997754

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.61  E-value=6.4e-08  Score=97.28  Aligned_cols=84  Identities=19%  Similarity=0.084  Sum_probs=67.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||+|||+|.+++. ++ ++.+|+|+|+|+.+++.++++...++  ...+++++++|+.+..    +.||+|++++
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~--l~~~v~~~~~D~~~~~----~~fD~Vi~dp  266 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNK--LEHKIIPILSDVREVD----VKGNRVIMNL  266 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCC----CCEEEEEECC
T ss_pred             CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECChHHhc----CCCcEEEECC
Confidence            678999999999999999 77 77899999999999999987764433  2357999999988765    7899999987


Q ss_pred             ccccccchHhHh
Q psy11730        369 TIYSVANYNKLL  380 (496)
Q Consensus       369 ~l~~~~~~~~~~  380 (496)
                      +.....-...+.
T Consensus       267 P~~~~~~l~~~~  278 (336)
T 2yx1_A          267 PKFAHKFIDKAL  278 (336)
T ss_dssp             TTTGGGGHHHHH
T ss_pred             cHhHHHHHHHHH
Confidence            765443333333

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.60  E-value=1.1e-07  Score=90.44  Aligned_cols=100  Identities=17%  Similarity=0.125  Sum_probs=72.1

Q ss_pred             HHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC
Q psy11730        281 FIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS  359 (496)
Q Consensus       281 ~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  359 (496)
                      .+..... .++.+|||+|||+|.++..+++. ..+|+++|+++.+++.++++....+  ...++++..+|+.+.... .+
T Consensus        82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~-~~  157 (248)
T 2yvl_A           82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFN--LGKNVKFFNVDFKDAEVP-EG  157 (248)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTT--CCTTEEEECSCTTTSCCC-TT
T ss_pred             HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcC--CCCcEEEEEcChhhcccC-CC
Confidence            3333333 35789999999999999999988 6799999999999999887653321  236799999998875422 56


Q ss_pred             ceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        360 KFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       360 ~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      .||+|+++.+     ++..+++..  .|.|++
T Consensus       158 ~~D~v~~~~~-----~~~~~l~~~~~~L~~gG  184 (248)
T 2yvl_A          158 IFHAAFVDVR-----EPWHYLEKVHKSLMEGA  184 (248)
T ss_dssp             CBSEEEECSS-----CGGGGHHHHHHHBCTTC
T ss_pred             cccEEEECCc-----CHHHHHHHHHHHcCCCC
Confidence            8999998543     444444431  455554

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.60  E-value=4.4e-08  Score=95.68  Aligned_cols=82  Identities=20%  Similarity=0.107  Sum_probs=65.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .+++|||||||+|.++..+++. +..+|+++|+++.+++.|+++....+ ....++++++.+|+.+......++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            5789999999999999998887 55899999999999999987653321 123578999999987643333578999999


Q ss_pred             cccc
Q psy11730        367 SETI  370 (496)
Q Consensus       367 ~~~l  370 (496)
                      +.+.
T Consensus       155 d~~~  158 (275)
T 1iy9_A          155 DSTE  158 (275)
T ss_dssp             SCSS
T ss_pred             CCCC
Confidence            7654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.60  E-value=3.1e-08  Score=92.39  Aligned_cols=86  Identities=17%  Similarity=0.188  Sum_probs=65.3

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      +++.+...  .++.+|||||||+|.++..++    .+|+|+|+|+.                  ++.+..+|+.+++.. 
T Consensus        58 ~~~~l~~~--~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~------------------~~~~~~~d~~~~~~~-  112 (215)
T 2zfu_A           58 IARDLRQR--PASLVVADFGCGDCRLASSIR----NPVHCFDLASL------------------DPRVTVCDMAQVPLE-  112 (215)
T ss_dssp             HHHHHHTS--CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS------------------STTEEESCTTSCSCC-
T ss_pred             HHHHHhcc--CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC------------------CceEEEeccccCCCC-
Confidence            44555432  356799999999999988863    68999999976                  356688898886543 


Q ss_pred             CCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        358 HSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +++||+|++..++++ .++..+++..  .|.|+|
T Consensus       113 ~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG  145 (215)
T 2zfu_A          113 DESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGG  145 (215)
T ss_dssp             TTCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEE
T ss_pred             CCCEeEEEEehhccc-cCHHHHHHHHHHhCCCCe
Confidence            578999999999975 7888887763  566655

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.60  E-value=4.5e-08  Score=95.98  Aligned_cols=83  Identities=14%  Similarity=0.166  Sum_probs=64.7

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCccccccc-CCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNT-DNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++++|||||||+|.++..+++.. ..+|+++|+++.+++.|+++....+. ....+++++.+|+.+......++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            357899999999999999998875 47999999999999999876533211 1246899999998775432257899999


Q ss_pred             Ecccc
Q psy11730        366 TSETI  370 (496)
Q Consensus       366 ~~~~l  370 (496)
                      ++.+.
T Consensus       157 ~d~~~  161 (283)
T 2i7c_A          157 VDSSD  161 (283)
T ss_dssp             EECCC
T ss_pred             EcCCC
Confidence            96543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.60  E-value=6.5e-08  Score=99.21  Aligned_cols=79  Identities=19%  Similarity=0.150  Sum_probs=62.2

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++++|||+|||+|.+++.+++.|+. |+|+|+|+.|++.++++...++.   . ..+.++|+.+......+.||+|++++
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~---~-~~~~~~D~~~~l~~~~~~fD~Ii~dp  288 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGL---R-VDIRHGEALPTLRGLEGPFHHVLLDP  288 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTC---C-CEEEESCHHHHHHTCCCCEEEEEECC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCC---C-CcEEEccHHHHHHHhcCCCCEEEECC
Confidence            4889999999999999999998876 99999999999999887644432   1 34668888775433234599999998


Q ss_pred             cccc
Q psy11730        369 TIYS  372 (496)
Q Consensus       369 ~l~~  372 (496)
                      +...
T Consensus       289 P~f~  292 (393)
T 4dmg_A          289 PTLV  292 (393)
T ss_dssp             CCCC
T ss_pred             CcCC
Confidence            8633

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.59  E-value=5.5e-08  Score=96.87  Aligned_cols=78  Identities=14%  Similarity=0.114  Sum_probs=64.2

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|..+..+++..  ..+|+|+|+|+.+++.++++....+   ..+++++++|+.+++.. .+.||+|+
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g---~~~v~~~~~D~~~~~~~-~~~fD~Il  192 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLHIGEL-NVEFDKIL  192 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGGGGGG-CCCEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC---CCeEEEEECChhhcccc-cccCCEEE
Confidence            357899999999999999999864  3789999999999999887754432   45799999999887653 57899999


Q ss_pred             Eccc
Q psy11730        366 TSET  369 (496)
Q Consensus       366 ~~~~  369 (496)
                      ++.+
T Consensus       193 ~d~P  196 (315)
T 1ixk_A          193 LDAP  196 (315)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9755

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.59  E-value=3.9e-08  Score=96.18  Aligned_cols=91  Identities=13%  Similarity=0.065  Sum_probs=68.4

Q ss_pred             HHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCe---EEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        276 FDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAH---VSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       276 ~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~---v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      ..+++.|.+... .++.+|||||||+|.++..+++.+..+   |+|+|+++.|++.++++.       ..+++++++|+.
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-------~~~v~~i~~D~~  100 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-------GELLELHAGDAL  100 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-------GGGEEEEESCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-------CCCcEEEECChh
Confidence            345555555544 357899999999999999999887543   999999999999998762       357999999999


Q ss_pred             CccccC--C-C--ceeEEEEccccccc
Q psy11730        352 SLSAVI--H-S--KFDIILTSETIYSV  373 (496)
Q Consensus       352 ~~~~~~--~-~--~fD~Ii~~~~l~~~  373 (496)
                      +++...  + .  ..+.|++|.+++-.
T Consensus       101 ~~~~~~~~~~~~~~~~~vv~NlPY~is  127 (279)
T 3uzu_A          101 TFDFGSIARPGDEPSLRIIGNLPYNIS  127 (279)
T ss_dssp             GCCGGGGSCSSSSCCEEEEEECCHHHH
T ss_pred             cCChhHhcccccCCceEEEEccCcccc
Confidence            876531  1 1  34578888887654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.58  E-value=9.5e-08  Score=99.01  Aligned_cols=85  Identities=21%  Similarity=0.272  Sum_probs=67.5

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .|.+.+.+  ..++.+|||+|||+|.+++.+++. ..+|+|+|+|+.|++.|+++...++   .. ++|+.+|+.++.. 
T Consensus       280 ~l~~~~~~--~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ng---l~-v~~~~~d~~~~~~-  351 (425)
T 2jjq_A          280 NLVRKVSE--LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINN---VD-AEFEVASDREVSV-  351 (425)
T ss_dssp             HHHHHHHH--HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHT---CC-EEEEECCTTTCCC-
T ss_pred             HHHHHhhc--cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcC---Cc-EEEEECChHHcCc-
Confidence            44555554  335789999999999999998886 4689999999999999987654332   33 9999999998753 


Q ss_pred             CCCceeEEEEccccc
Q psy11730        357 IHSKFDIILTSETIY  371 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~  371 (496)
                        ..||+|+++++..
T Consensus       352 --~~fD~Vv~dPPr~  364 (425)
T 2jjq_A          352 --KGFDTVIVDPPRA  364 (425)
T ss_dssp             --TTCSEEEECCCTT
T ss_pred             --cCCCEEEEcCCcc
Confidence              3899999998853

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.58  E-value=1.2e-07  Score=96.91  Aligned_cols=93  Identities=18%  Similarity=0.148  Sum_probs=73.9

Q ss_pred             hHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC---------------------------------------Ce
Q psy11730        275 TFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA---------------------------------------AH  314 (496)
Q Consensus       275 ~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~---------------------------------------~~  314 (496)
                      ...|+..|...... ++..|||+|||+|.+++.++..+.                                       .+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            34566666666554 477999999999999999887643                                       36


Q ss_pred             EEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccc
Q psy11730        315 VSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       315 v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~  371 (496)
                      |+|+|+++.|++.|+.+....+  ...+++|.++|+.++..  ...||+|++++++.
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~g--l~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg  312 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAG--VDEYIEFNVGDATQFKS--EDEFGFIITNPPYG  312 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHT--CGGGEEEEECCGGGCCC--SCBSCEEEECCCCC
T ss_pred             EEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhcCc--CCCCcEEEECCCCc
Confidence            9999999999999998764433  23479999999998765  46899999999975

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.58  E-value=8.8e-08  Score=93.22  Aligned_cols=96  Identities=17%  Similarity=0.104  Sum_probs=69.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc-c-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN-G-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~-~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|+++..........++++..+|+.+.+.. .+.||+|+
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~-~~~~D~v~  176 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP-DGSVDRAV  176 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC-TTCEEEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC-CCceeEEE
Confidence            35779999999999999999885 4 479999999999999988764322001245899999999877543 57899999


Q ss_pred             EccccccccchHhHhhee--eecCCC
Q psy11730        366 TSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       366 ~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ++.     +++..+++..  .|.|++
T Consensus       177 ~~~-----~~~~~~l~~~~~~L~pgG  197 (280)
T 1i9g_A          177 LDM-----LAPWEVLDAVSRLLVAGG  197 (280)
T ss_dssp             EES-----SCGGGGHHHHHHHEEEEE
T ss_pred             ECC-----cCHHHHHHHHHHhCCCCC
Confidence            943     3444444432  455554

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.58  E-value=4.9e-08  Score=95.60  Aligned_cols=80  Identities=23%  Similarity=0.205  Sum_probs=64.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccC--------CCCceEEEecccCCccccCCCc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD--------NLEKCKFYHGDWGSLSAVIHSK  360 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~--------~~~~v~~~~~d~~~~~~~~~~~  360 (496)
                      .+++|||||||+|.++..+++.+..+|+++|+++.+++.|+++. ..+..        ...+++++.+|+.+.... .++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~  152 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG  152 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence            57899999999999999998886679999999999999998765 32111        356899999998764333 578


Q ss_pred             eeEEEEcccc
Q psy11730        361 FDIILTSETI  370 (496)
Q Consensus       361 fD~Ii~~~~l  370 (496)
                      ||+|+++.+.
T Consensus       153 fD~Ii~d~~~  162 (281)
T 1mjf_A          153 FDVIIADSTD  162 (281)
T ss_dssp             EEEEEEECCC
T ss_pred             eeEEEECCCC
Confidence            9999997664

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.57  E-value=9e-08  Score=96.70  Aligned_cols=85  Identities=19%  Similarity=0.198  Sum_probs=69.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .+.+|||||||+|.++..+++..+ .+++++|+ +.|++.+++.         .+++|..+|+.+ +.  . .||+|++.
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~-~~--p-~~D~v~~~  253 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS---------NNLTYVGGDMFT-SI--P-NADAVLLK  253 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB---------TTEEEEECCTTT-CC--C-CCSEEEEE
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC---------CCcEEEeccccC-CC--C-CccEEEee
Confidence            457999999999999999998765 68999999 9999887652         359999999865 32  2 39999999


Q ss_pred             cccccccchH--hHhhee--eecC
Q psy11730        368 ETIYSVANYN--KLLTVW--CLFP  387 (496)
Q Consensus       368 ~~l~~~~~~~--~~~~~~--~l~p  387 (496)
                      .++|++++.+  .++++.  .|.|
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p  277 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTN  277 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSG
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCC
Confidence            9999998887  777663  5666

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.56  E-value=6.7e-08  Score=95.75  Aligned_cols=83  Identities=19%  Similarity=0.104  Sum_probs=64.5

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCccccc-ccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILM-NTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      ..+++|||||||+|.++..+++... .+|+++|+++.+++.|+++.... +.....+++++.+|+.+......++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            4578999999999999999988754 79999999999999998765331 111256899999998764332357899999


Q ss_pred             Ecccc
Q psy11730        366 TSETI  370 (496)
Q Consensus       366 ~~~~l  370 (496)
                      ++.+.
T Consensus       174 ~d~~~  178 (304)
T 2o07_A          174 TDSSD  178 (304)
T ss_dssp             EECC-
T ss_pred             ECCCC
Confidence            97654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.56  E-value=4.6e-08  Score=100.11  Aligned_cols=80  Identities=18%  Similarity=0.160  Sum_probs=65.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC---CCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI---HSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~fD~Ii  365 (496)
                      ++.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|+++...++   ..+++|+.+|+.+.....   ..+||+|+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~---~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii  284 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNG---LGNVRVLEANAFDLLRRLEKEGERFDLVV  284 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTT---CTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcC---CCCceEEECCHHHHHHHHHhcCCCeeEEE
Confidence            6789999999999999999887 7789999999999999987754432   445999999988764321   46899999


Q ss_pred             Ecccccc
Q psy11730        366 TSETIYS  372 (496)
Q Consensus       366 ~~~~l~~  372 (496)
                      ++++.+.
T Consensus       285 ~dpP~~~  291 (382)
T 1wxx_A          285 LDPPAFA  291 (382)
T ss_dssp             ECCCCSC
T ss_pred             ECCCCCC
Confidence            9887644

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.56  E-value=5.2e-08  Score=96.20  Aligned_cols=81  Identities=16%  Similarity=0.121  Sum_probs=63.2

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .+++|||||||+|.++..+++. +..+|+++|+++.+++.|+++....+ .....+++++.+|+.+......++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            5689999999999999999887 45899999999999999987653311 112468999999987643323578999998


Q ss_pred             ccc
Q psy11730        367 SET  369 (496)
Q Consensus       367 ~~~  369 (496)
                      +.+
T Consensus       170 d~~  172 (296)
T 1inl_A          170 DST  172 (296)
T ss_dssp             EC-
T ss_pred             cCC
Confidence            654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.55  E-value=1.1e-07  Score=96.20  Aligned_cols=95  Identities=18%  Similarity=0.164  Sum_probs=73.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ++.+|||||||+|.++..+++.++ .+++++|+ +.+++.++++....+  ...+++|+.+|+.+..   ...||+|++.
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~---~~~~D~v~~~  256 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFEPL---PRKADAIILS  256 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTSCC---SSCEEEEEEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCCCC---CCCccEEEEc
Confidence            467999999999999999998876 68999999 999999887653322  2348999999987522   2359999999


Q ss_pred             cccccccchH--hHhhee--eecCCC
Q psy11730        368 ETIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                      .++|++++.+  .+++..  .|.|++
T Consensus       257 ~vl~~~~~~~~~~~l~~~~~~L~pgG  282 (360)
T 1tw3_A          257 FVLLNWPDHDAVRILTRCAEALEPGG  282 (360)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHTEEEEE
T ss_pred             ccccCCCHHHHHHHHHHHHHhcCCCc
Confidence            9999997764  566552  555654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.55  E-value=1e-07  Score=89.95  Aligned_cols=85  Identities=13%  Similarity=0.070  Sum_probs=65.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-------CeEEEEeCCHHHHHHhcCccccccc--CCCCceEEEecccCCccccCCC
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-------AHVSFQDYNQEVIESLTLPNILMNT--DNLEKCKFYHGDWGSLSAVIHS  359 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-------~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~  359 (496)
                      ++.+|||||||+|.++..+++...       .+|+++|+++.+++.++++....+.  ....++++..+|..+... ..+
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  162 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP-PNA  162 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG-GGC
T ss_pred             CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCC-cCC
Confidence            577999999999999999988532       5899999999999998876532210  003478999999876322 137


Q ss_pred             ceeEEEEcccccccc
Q psy11730        360 KFDIILTSETIYSVA  374 (496)
Q Consensus       360 ~fD~Ii~~~~l~~~~  374 (496)
                      .||+|++..+++++.
T Consensus       163 ~fD~I~~~~~~~~~~  177 (227)
T 1r18_A          163 PYNAIHVGAAAPDTP  177 (227)
T ss_dssp             SEEEEEECSCBSSCC
T ss_pred             CccEEEECCchHHHH
Confidence            899999999988874

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.55  E-value=7.2e-08  Score=92.88  Aligned_cols=88  Identities=10%  Similarity=0.075  Sum_probs=65.1

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCe--EEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAH--VSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~--v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      .+++.|.+...+ ++.+|||||||+|.++. ++. + .+  |+|+|+++.|++.++++...     ..+++++++|+.++
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~-----~~~v~~i~~D~~~~   79 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTF   79 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGC
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhcc-----CCceEEEECchhhC
Confidence            344555554443 47799999999999999 654 3 45  99999999999999876522     25899999999887


Q ss_pred             cccCC----CceeEEEEcccccc
Q psy11730        354 SAVIH----SKFDIILTSETIYS  372 (496)
Q Consensus       354 ~~~~~----~~fD~Ii~~~~l~~  372 (496)
                      +....    +..|+|+++.+++-
T Consensus        80 ~~~~~~~~~~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           80 NFGELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             CHHHHHHHHTSCEEEEEECCTTT
T ss_pred             CHHHhhcccCCceEEEECCCCCc
Confidence            54210    23578999988754

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.54  E-value=8.6e-08  Score=88.35  Aligned_cols=84  Identities=14%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             ecchHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      -.+++.|.+.+.....+ ++.+|||||||+|.++..+++. ..+|+|+|+++..              ...+++++++|+
T Consensus         7 ~Ra~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~--------------~~~~v~~~~~D~   71 (191)
T 3dou_A            7 SRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME--------------EIAGVRFIRCDI   71 (191)
T ss_dssp             SHHHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC--------------CCTTCEEEECCT
T ss_pred             CcHHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc--------------cCCCeEEEEccc
Confidence            34566777777765443 5789999999999999999888 6789999999731              235799999998


Q ss_pred             CCcccc------CC----CceeEEEEcccc
Q psy11730        351 GSLSAV------IH----SKFDIILTSETI  370 (496)
Q Consensus       351 ~~~~~~------~~----~~fD~Ii~~~~l  370 (496)
                      .+....      ..    ++||+|+++.+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~  101 (191)
T 3dou_A           72 FKETIFDDIDRALREEGIEKVDDVVSDAMA  101 (191)
T ss_dssp             TSSSHHHHHHHHHHHHTCSSEEEEEECCCC
T ss_pred             cCHHHHHHHHHHhhcccCCcceEEecCCCc
Confidence            875421      01    489999997654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.54  E-value=1.6e-07  Score=95.69  Aligned_cols=87  Identities=20%  Similarity=0.150  Sum_probs=71.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .+.+|||||||+|.++..+++.++ .+++++|+ +.|++.+++         ..+++++.+|+.+ +.  .. ||+|++.
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~--~~-~D~v~~~  274 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFA-SV--PQ-GDAMILK  274 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CC--CC-EEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCccc-CC--CC-CCEEEEe
Confidence            367999999999999999998876 68999999 999987764         2469999999877 32  23 9999999


Q ss_pred             cccccccchH--hHhhee--eecCCC
Q psy11730        368 ETIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                      .++||+++.+  .++++.  .|.|++
T Consensus       275 ~~lh~~~d~~~~~~l~~~~~~L~pgG  300 (372)
T 1fp1_D          275 AVCHNWSDEKCIEFLSNCHKALSPNG  300 (372)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCCC
Confidence            9999998887  777663  566654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.54  E-value=3.9e-08  Score=100.82  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=64.3

Q ss_pred             CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-CCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-IHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~Ii~~~  368 (496)
                      |.+|||+|||+|..++.+++.+ .+|+|+|+|+.|++.|+.+...... +..+++++++|+.+.... ....||+|++++
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~-gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDP  171 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLN-EGKDVNILTGDFKEYLPLIKTFHPDYIYVDP  171 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSC-TTCEEEEEESCGGGSHHHHHHHCCSEEEECC
T ss_pred             CCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhcc-CCCcEEEEECcHHHhhhhccCCCceEEEECC
Confidence            7899999999999999988775 5899999999999999887643310 136899999999875321 135899999988


Q ss_pred             cccc
Q psy11730        369 TIYS  372 (496)
Q Consensus       369 ~l~~  372 (496)
                      +...
T Consensus       172 Prr~  175 (410)
T 3ll7_A          172 ARRS  175 (410)
T ss_dssp             EEC-
T ss_pred             CCcC
Confidence            7654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.54  E-value=5.4e-08  Score=92.91  Aligned_cols=84  Identities=11%  Similarity=0.028  Sum_probs=68.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ...+|||||||+|.+++.++... ..+|+|+|+++.|++.++.+...+    ..+..+...|...-+.  .+.||+|++.
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~----g~~~~~~v~D~~~~~p--~~~~DvaL~l  205 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL----NVPHRTNVADLLEDRL--DEPADVTLLL  205 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT----TCCEEEEECCTTTSCC--CSCCSEEEET
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeeecccCC--CCCcchHHHH
Confidence            36799999999999999988774 479999999999999998876443    2347788888765543  6889999999


Q ss_pred             cccccccchHh
Q psy11730        368 ETIYSVANYNK  378 (496)
Q Consensus       368 ~~l~~~~~~~~  378 (496)
                      -+++++++.++
T Consensus       206 kti~~Le~q~k  216 (281)
T 3lcv_B          206 KTLPCLETQQR  216 (281)
T ss_dssp             TCHHHHHHHST
T ss_pred             HHHHHhhhhhh
Confidence            99999976543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.53  E-value=5.4e-08  Score=98.84  Aligned_cols=98  Identities=14%  Similarity=0.105  Sum_probs=71.1

Q ss_pred             HHHHHhCCCCCCCeEEEecCc------CCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        279 LNFIKDNVAVDKLSVLDVGCG------AGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       279 ~~~l~~~~~~~~~~VLDlGcG------tG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .+.+......++.+|||||||      +|..++.+++..  ..+|+|+|+|+.|..            ...+++|+++|+
T Consensus       206 Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~------------~~~rI~fv~GDa  273 (419)
T 3sso_A          206 YDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV------------DELRIRTIQGDQ  273 (419)
T ss_dssp             HHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG------------CBTTEEEEECCT
T ss_pred             HHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh------------cCCCcEEEEecc
Confidence            333333333467899999999      777777777652  479999999999831            235899999999


Q ss_pred             CCcccc-----CCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        351 GSLSAV-----IHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       351 ~~~~~~-----~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      .+++..     ..++||+|+++.. +++.+....++++  .|.|+|
T Consensus       274 ~dlpf~~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLKPGG  318 (419)
T 3sso_A          274 NDAEFLDRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVRPGG  318 (419)
T ss_dssp             TCHHHHHHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEEEEE
T ss_pred             cccchhhhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcCCCe
Confidence            987653     1478999999754 6677777777762  566655

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.53  E-value=2.1e-07  Score=93.28  Aligned_cols=82  Identities=16%  Similarity=0.199  Sum_probs=61.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCccccc------cc--CCCCceEEEecccCCccc-c
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILM------NT--DNLEKCKFYHGDWGSLSA-V  356 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~------~~--~~~~~v~~~~~d~~~~~~-~  356 (496)
                      .++.+|||+|||+|.++..+++. ++ .+|+|+|+++.+++.|+++....      |.  ....++++..+|+.+... .
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~  183 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  183 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence            45789999999999999999987 56 79999999999999998765431      11  123689999999987642 1


Q ss_pred             CCCceeEEEEccc
Q psy11730        357 IHSKFDIILTSET  369 (496)
Q Consensus       357 ~~~~fD~Ii~~~~  369 (496)
                      ..+.||+|+++.+
T Consensus       184 ~~~~fD~V~~~~~  196 (336)
T 2b25_A          184 KSLTFDAVALDML  196 (336)
T ss_dssp             ----EEEEEECSS
T ss_pred             CCCCeeEEEECCC
Confidence            2468999999654

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.52  E-value=1.1e-07  Score=95.27  Aligned_cols=82  Identities=11%  Similarity=0.107  Sum_probs=63.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCccccccc-CCCCceEEEecccCCcccc-CCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNT-DNLEKCKFYHGDWGSLSAV-IHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~-~~~~~v~~~~~d~~~~~~~-~~~~fD~I  364 (496)
                      ..+++|||||||+|.++..+++... .+|+++|+|+.+++.|+++....+. ....+++++.+|+.+.... ..++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            3568999999999999999988754 7999999999999999876543211 1246899999998765322 24789999


Q ss_pred             EEccc
Q psy11730        365 LTSET  369 (496)
Q Consensus       365 i~~~~  369 (496)
                      +++.+
T Consensus       199 i~d~~  203 (334)
T 1xj5_A          199 IVDSS  203 (334)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.52  E-value=6.8e-08  Score=96.46  Aligned_cols=81  Identities=15%  Similarity=0.179  Sum_probs=63.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCccccc-ccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILM-NTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .+++|||||||+|.++..+++.. ..+|+++|+|+.+++.|+++.... +.....+++++.+|+.+......++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            56899999999999999998874 479999999999999998765331 1112468999999987643322578999999


Q ss_pred             ccc
Q psy11730        367 SET  369 (496)
Q Consensus       367 ~~~  369 (496)
                      +.+
T Consensus       196 d~~  198 (321)
T 2pt6_A          196 DSS  198 (321)
T ss_dssp             ECC
T ss_pred             CCc
Confidence            753

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.52  E-value=8.1e-08  Score=95.17  Aligned_cols=87  Identities=20%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeC----CHHHHHHhcCcccccccCCCCceEEEec-
Q psy11730        274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDY----NQEVIESLTLPNILMNTDNLEKCKFYHG-  348 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~----s~~~i~~a~~~~~~~~~~~~~~v~~~~~-  348 (496)
                      .++.|.+.+......++.+|||||||+|.++..+++.  ++|+|+|+    ++.+++.+...     ....+++.|+.+ 
T Consensus        67 ~a~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~  139 (305)
T 2p41_A           67 GSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMS-----TYGWNLVRLQSGV  139 (305)
T ss_dssp             HHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCC-----STTGGGEEEECSC
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhh-----hcCCCCeEEEecc
Confidence            4556666665532334789999999999999999888  57999999    56544221111     111357899998 


Q ss_pred             ccCCccccCCCceeEEEEcccc
Q psy11730        349 DWGSLSAVIHSKFDIILTSETI  370 (496)
Q Consensus       349 d~~~~~~~~~~~fD~Ii~~~~l  370 (496)
                      |+..++   ..+||+|+|+.++
T Consensus       140 D~~~l~---~~~fD~V~sd~~~  158 (305)
T 2p41_A          140 DVFFIP---PERCDTLLCDIGE  158 (305)
T ss_dssp             CTTTSC---CCCCSEEEECCCC
T ss_pred             ccccCC---cCCCCEEEECCcc
Confidence            887664   4689999997765

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.52  E-value=5e-08  Score=91.96  Aligned_cols=79  Identities=13%  Similarity=-0.001  Sum_probs=62.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--C---Cce
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--H---SKF  361 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~---~~f  361 (496)
                      ++++|||||||+|..++.+++..  ..+|+++|+++.+++.++++....+  ...+++++.+|+.+.....  .   ++|
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            57899999999999999998864  4799999999999999887653322  2368999999986542211  1   689


Q ss_pred             eEEEEccc
Q psy11730        362 DIILTSET  369 (496)
Q Consensus       362 D~Ii~~~~  369 (496)
                      |+|++...
T Consensus       147 D~v~~d~~  154 (229)
T 2avd_A          147 DVAVVDAD  154 (229)
T ss_dssp             EEEEECSC
T ss_pred             cEEEECCC
Confidence            99999766

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.52  E-value=2.6e-07  Score=94.73  Aligned_cols=92  Identities=10%  Similarity=0.114  Sum_probs=71.8

Q ss_pred             HHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC---------------------------------------CeE
Q psy11730        276 FDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA---------------------------------------AHV  315 (496)
Q Consensus       276 ~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~---------------------------------------~~v  315 (496)
                      ..|+..|..... ..+..|||.+||+|.+++.++..+.                                       .+|
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  266 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI  266 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence            345555555444 3477999999999999999887554                                       359


Q ss_pred             EEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccc
Q psy11730        316 SFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       316 ~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~  371 (496)
                      +|+|+|+.|++.|+.+....+  ...+++|.++|+.+++.  ..+||+|++++++.
T Consensus       267 ~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg  318 (393)
T 3k0b_A          267 IGGDIDARLIEIAKQNAVEAG--LGDLITFRQLQVADFQT--EDEYGVVVANPPYG  318 (393)
T ss_dssp             EEEESCHHHHHHHHHHHHHTT--CTTCSEEEECCGGGCCC--CCCSCEEEECCCCC
T ss_pred             EEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHhCCC--CCCCCEEEECCCCc
Confidence            999999999999988764432  33469999999998765  46899999999974

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.51  E-value=7.5e-08  Score=95.85  Aligned_cols=84  Identities=15%  Similarity=0.113  Sum_probs=66.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccC--CCCceEEEecccCCccccCCCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTD--NLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .+++|||||||+|.++..+++.. ..+|+++|+++.+++.|+++....+.+  ...+++++.+|+.+......++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            56899999999999999998874 479999999999999998765332211  256899999998775332367899999


Q ss_pred             Ecccccc
Q psy11730        366 TSETIYS  372 (496)
Q Consensus       366 ~~~~l~~  372 (496)
                      ++.+.+.
T Consensus       157 ~d~~~~~  163 (314)
T 1uir_A          157 IDLTDPV  163 (314)
T ss_dssp             EECCCCB
T ss_pred             ECCCCcc
Confidence            9876544

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.51  E-value=2.8e-07  Score=96.86  Aligned_cols=125  Identities=17%  Similarity=0.219  Sum_probs=86.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ++.+|||+|||+|..+..+++..  ...|+|+|+|+.+++.++++....+   ..++.++++|+.++.....+.||+|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g---~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG---ISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            57899999999999999998863  3789999999999999887754432   457999999998876433678999999


Q ss_pred             ccccccc------cc----------------hHhHhhe--eeecCCCCCcccEEEeeccCCcccccccchhhHhcCC
Q psy11730        367 SETIYSV------AN----------------YNKLLTV--WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPR  419 (496)
Q Consensus       367 ~~~l~~~------~~----------------~~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (496)
                      +.+..-.      ++                ...+++.  ..|.|+|.   +++.............+.++...++.
T Consensus       194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~---LvysTcs~~~~Ene~vv~~~l~~~~~  267 (479)
T 2frx_A          194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGT---LVYSTCTLNQEENEAVCLWLKETYPD  267 (479)
T ss_dssp             ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEE---EEEEESCCSSTTTHHHHHHHHHHSTT
T ss_pred             CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCE---EEEecccCCcccCHHHHHHHHHHCCC
Confidence            7654321      11                1123332  25667664   44444333333455667777776665

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.50  E-value=8.9e-08  Score=99.93  Aligned_cols=124  Identities=13%  Similarity=0.055  Sum_probs=85.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ++.+|||+|||+|..+..+++...  .+|+|+|+|+.+++.++++....+   .. +.++++|+.++.....+.||+|++
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G---~~-v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG---AP-LAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC---CC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---Ce-EEEEECCHHHhhhhccccCCEEEE
Confidence            588999999999999999987633  689999999999999887754433   34 899999988776433688999998


Q ss_pred             ccccccc------cch----------------HhHhhe--eeecCCCCCcccEEEeeccCCcccccccchhhHhcCC
Q psy11730        367 SETIYSV------ANY----------------NKLLTV--WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPR  419 (496)
Q Consensus       367 ~~~l~~~------~~~----------------~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (496)
                      +.+..-.      ++.                ..+++.  ..|.|+|.   +++..-..........+.+|...++.
T Consensus       177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~---LvysTCs~~~eEne~vv~~~l~~~~~  250 (464)
T 3m6w_A          177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGV---LVYSTCTFAPEENEGVVAHFLKAHPE  250 (464)
T ss_dssp             ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEE---EEEEESCCCGGGTHHHHHHHHHHCTT
T ss_pred             CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcE---EEEEeccCchhcCHHHHHHHHHHCCC
Confidence            6664211      111                223332  25666654   45544433444566677788776653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.50  E-value=9.9e-08  Score=94.91  Aligned_cols=81  Identities=22%  Similarity=0.235  Sum_probs=64.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccC-CCCceEEEecccCCccccCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTD-NLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .+++|||||||+|.++..+++.. ..+|+++|+++.+++.|+++....+.+ ...+++++.+|+.+......++||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            56899999999999999998875 479999999999999998765332111 2568999999987643323578999999


Q ss_pred             ccc
Q psy11730        367 SET  369 (496)
Q Consensus       367 ~~~  369 (496)
                      +.+
T Consensus       188 d~~  190 (314)
T 2b2c_A          188 DSS  190 (314)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            764

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.49  E-value=2.5e-07  Score=93.24  Aligned_cols=100  Identities=18%  Similarity=0.138  Sum_probs=71.4

Q ss_pred             HHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730        281 FIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH  358 (496)
Q Consensus       281 ~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  358 (496)
                      .+.+..++ .+.+|||||||+|.++..+++..+ .+++++|++ .++.  +++...  .....+++|..+|+.+ +.  .
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~--~~~~~~v~~~~~d~~~-~~--p  246 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDA--PDVAGRWKVVEGDFLR-EV--P  246 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCC--GGGTTSEEEEECCTTT-CC--C
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccc--cCCCCCeEEEecCCCC-CC--C
Confidence            33333344 367999999999999999998776 589999994 5554  222111  1234679999999862 21  3


Q ss_pred             CceeEEEEccccccccch--HhHhhee--eecCCC
Q psy11730        359 SKFDIILTSETIYSVANY--NKLLTVW--CLFPTH  389 (496)
Q Consensus       359 ~~fD~Ii~~~~l~~~~~~--~~~~~~~--~l~p~~  389 (496)
                       +||+|++..++|++++.  ..++++.  .|.|++
T Consensus       247 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG  280 (348)
T 3lst_A          247 -HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHG  280 (348)
T ss_dssp             -CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTC
T ss_pred             -CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCC
Confidence             89999999999999887  4677663  566665

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.49  E-value=1.6e-07  Score=96.99  Aligned_cols=86  Identities=14%  Similarity=0.085  Sum_probs=67.5

Q ss_pred             hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      ...+++++.+... .++.+|||+|||+|.+++.+++.  ...+|+|+|+++.+++.|            .+++++++|+.
T Consensus        24 P~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~~~D~~   91 (421)
T 2ih2_A           24 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGILADFL   91 (421)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEEESCGG
T ss_pred             CHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEEeCChh
Confidence            3456666666554 35679999999999999999876  347999999999998765            36788999988


Q ss_pred             CccccCCCceeEEEEcccccccc
Q psy11730        352 SLSAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      +...  .+.||+|++++++....
T Consensus        92 ~~~~--~~~fD~Ii~NPPy~~~~  112 (421)
T 2ih2_A           92 LWEP--GEAFDLILGNPPYGIVG  112 (421)
T ss_dssp             GCCC--SSCEEEEEECCCCCCBS
T ss_pred             hcCc--cCCCCEEEECcCccCcc
Confidence            7643  47899999999986553

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.48  E-value=2e-07  Score=85.44  Aligned_cols=84  Identities=23%  Similarity=0.257  Sum_probs=59.5

Q ss_pred             hHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHc-cC---------CeEEEEeCCHHHHHHhcCcccccccCCCCce
Q psy11730        275 TFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMN-GA---------AHVSFQDYNQEVIESLTLPNILMNTDNLEKC  343 (496)
Q Consensus       275 ~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~-~~---------~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v  343 (496)
                      .+.|.+.......+ ++.+|||||||+|.++..+++. +.         .+|+|+|+|+.+              ...++
T Consensus         7 ~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------------~~~~~   72 (196)
T 2nyu_A            7 AFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------------PLEGA   72 (196)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------------CCTTC
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------------cCCCC
Confidence            44555555544433 4789999999999999999987 43         689999999831              12467


Q ss_pred             EEE-ecccCCccc-------cCCCceeEEEEcccccc
Q psy11730        344 KFY-HGDWGSLSA-------VIHSKFDIILTSETIYS  372 (496)
Q Consensus       344 ~~~-~~d~~~~~~-------~~~~~fD~Ii~~~~l~~  372 (496)
                      +++ .+|+.+...       ...++||+|+++.+++.
T Consensus        73 ~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~  109 (196)
T 2nyu_A           73 TFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNA  109 (196)
T ss_dssp             EEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCC
T ss_pred             eEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCC
Confidence            888 888766432       11358999999765543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.48  E-value=9.8e-08  Score=99.47  Aligned_cols=125  Identities=16%  Similarity=0.131  Sum_probs=87.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|..++.+++.  +..+|+|+|+|+.+++.++++....+   ..++.++++|..++.....+.||+|+
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g---~~nv~v~~~Da~~l~~~~~~~FD~Il  180 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG---VSNAIVTNHAPAELVPHFSGFFDRIV  180 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT---CSSEEEECCCHHHHHHHHTTCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhhhccccCCEEE
Confidence            35889999999999999999875  33689999999999999887764443   45799999998877643368999999


Q ss_pred             Ecccccccc----chH------------------hHhhe--eeecCCCCCcccEEEeeccCCcccccccchhhHhcC
Q psy11730        366 TSETIYSVA----NYN------------------KLLTV--WCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYP  418 (496)
Q Consensus       366 ~~~~l~~~~----~~~------------------~~~~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (496)
                      ++.+..-..    +++                  .++..  ..|.|+|.   +++..-..........+.+|...++
T Consensus       181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~---LvYsTCs~~~eEne~vv~~~l~~~~  254 (456)
T 3m4x_A          181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQ---LIYSTCTFAPEENEEIISWLVENYP  254 (456)
T ss_dssp             EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEE---EEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred             ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcE---EEEEEeecccccCHHHHHHHHHhCC
Confidence            987642211    111                  22322  15666654   4554444444456667778877665

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.48  E-value=9.5e-08  Score=91.07  Aligned_cols=96  Identities=16%  Similarity=0.076  Sum_probs=69.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC------CCc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI------HSK  360 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~  360 (496)
                      ++++|||||||+|..++.+++..  ..+|+++|+++.+++.|+++....+  ...+++++.+|+.+.....      .++
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG--VEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            57899999999999999999863  3799999999999999987653322  2457999999987653221      478


Q ss_pred             eeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        361 FDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       361 fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      ||+|++....   .+...+++..  .|.|++
T Consensus       148 fD~I~~d~~~---~~~~~~l~~~~~~L~pGG  175 (237)
T 3c3y_A          148 YDFGFVDADK---PNYIKYHERLMKLVKVGG  175 (237)
T ss_dssp             EEEEEECSCG---GGHHHHHHHHHHHEEEEE
T ss_pred             cCEEEECCch---HHHHHHHHHHHHhcCCCe
Confidence            9999997543   2334444431  455554

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.48  E-value=3.5e-07  Score=89.08  Aligned_cols=77  Identities=13%  Similarity=0.094  Sum_probs=62.0

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|.+++.+++. ++ .+|+++|+|+.+++.|+++....+  ...++++..+|+.+..  ..+.||+|+
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~--~~~~~D~V~  186 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISEGF--DEKDVDALF  186 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGGCC--SCCSEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHcc--cCCccCEEE
Confidence            35789999999999999999987 53 799999999999999887643321  2257999999988762  246899999


Q ss_pred             Ecc
Q psy11730        366 TSE  368 (496)
Q Consensus       366 ~~~  368 (496)
                      ++.
T Consensus       187 ~~~  189 (277)
T 1o54_A          187 LDV  189 (277)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            964

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.48  E-value=7.5e-08  Score=91.42  Aligned_cols=96  Identities=16%  Similarity=0.105  Sum_probs=68.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC---C--Cce
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI---H--SKF  361 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~--~~f  361 (496)
                      ++++|||||||+|..++.+++..+  .+|+++|+|+.+++.|+++....+  ...+++++.+|+.+.....   +  ++|
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG--VAEKISLRLGPALATLEQLTQGKPLPEF  149 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            567999999999999999998643  689999999999999887643322  2357999999976532111   2  789


Q ss_pred             eEEEEccccccccchHhHhhee--eecCCC
Q psy11730        362 DIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       362 D~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      |+|++....   .+...+++..  .|.|++
T Consensus       150 D~V~~d~~~---~~~~~~l~~~~~~LkpgG  176 (232)
T 3cbg_A          150 DLIFIDADK---RNYPRYYEIGLNLLRRGG  176 (232)
T ss_dssp             EEEEECSCG---GGHHHHHHHHHHTEEEEE
T ss_pred             CEEEECCCH---HHHHHHHHHHHHHcCCCe
Confidence            999987653   3344444431  445544

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.47  E-value=4.4e-07  Score=92.72  Aligned_cols=93  Identities=12%  Similarity=0.111  Sum_probs=72.3

Q ss_pred             HHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC---------------------------------------CeE
Q psy11730        276 FDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA---------------------------------------AHV  315 (496)
Q Consensus       276 ~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~---------------------------------------~~v  315 (496)
                      ..|+..|..... ..+..|||.+||+|.+.+.++..+.                                       .+|
T Consensus       180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            456665555444 3577999999999999999886554                                       359


Q ss_pred             EEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcccccc
Q psy11730        316 SFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       316 ~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~  372 (496)
                      +|+|+++.|++.|+.+....+  ....++|.++|+.+++.  ...||+|++++++..
T Consensus       260 ~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPYG~  312 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREVG--LEDVVKLKQMRLQDFKT--NKINGVLISNPPYGE  312 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCGGGCCC--CCCSCEEEECCCCTT
T ss_pred             EEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHHCCc--cCCcCEEEECCchhh
Confidence            999999999999987764432  34469999999998765  468999999999753

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.47  E-value=1.3e-07  Score=89.92  Aligned_cols=96  Identities=14%  Similarity=0.042  Sum_probs=68.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC---------
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI---------  357 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---------  357 (496)
                      ++.+|||||||+|..+..+++..  ..+|+++|+++.+++.|+++....+  ...++++..+|+.+.....         
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG--LENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            57899999999999999999875  4799999999999999887653322  2345999999976532110         


Q ss_pred             ------C-CceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        358 ------H-SKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       358 ------~-~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                            . ++||+|++.....+   ...+++..  .|.|++
T Consensus       138 ~~~f~~~~~~fD~I~~~~~~~~---~~~~l~~~~~~L~pgG  175 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDADKEN---YPNYYPLILKLLKPGG  175 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSCGGG---HHHHHHHHHHHEEEEE
T ss_pred             cccccCCCCCcCEEEEeCCHHH---HHHHHHHHHHHcCCCe
Confidence                  1 78999999865433   33444431  455544

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.46  E-value=5.6e-07  Score=91.52  Aligned_cols=97  Identities=18%  Similarity=0.164  Sum_probs=72.9

Q ss_pred             HHHHHhCCC-CC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        279 LNFIKDNVA-VD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       279 ~~~l~~~~~-~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      +..+..... +. +.+|||||||+|.++..+++..+ .+++++|+ +.+++.++.         ..+++|+.+|+.+ +.
T Consensus       191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~  259 (368)
T 3reo_A          191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFD-GV  259 (368)
T ss_dssp             HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CC
T ss_pred             HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCC-CC
Confidence            344444433 44 57999999999999999998776 68999999 999987664         2579999999886 33


Q ss_pred             cCCCceeEEEEccccccccchH--hHhhee--eecCCC
Q psy11730        356 VIHSKFDIILTSETIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                      + . . |+|++..++|++++.+  .++++.  .|.|++
T Consensus       260 p-~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG  294 (368)
T 3reo_A          260 P-K-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHG  294 (368)
T ss_dssp             C-C-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTC
T ss_pred             C-C-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCC
Confidence            2 2 3 9999999999997654  556653  556654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.45  E-value=3.2e-07  Score=88.83  Aligned_cols=92  Identities=13%  Similarity=0.021  Sum_probs=68.5

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccc-ccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILM-NTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ..+++|||||||+|.++..+++.+ .+|+++|+++.|++.|+++.... +....++++++.+|..+..    ++||+|++
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii~  145 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIFC  145 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEEE
Confidence            356899999999999999988886 89999999999999998865321 1113468999999987654    78999999


Q ss_pred             ccccccccchHhHhhe--eeecCCC
Q psy11730        367 SETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      +..     ++..+++.  ..|.|+|
T Consensus       146 d~~-----dp~~~~~~~~~~L~pgG  165 (262)
T 2cmg_A          146 LQE-----PDIHRIDGLKRMLKEDG  165 (262)
T ss_dssp             SSC-----CCHHHHHHHHTTEEEEE
T ss_pred             CCC-----ChHHHHHHHHHhcCCCc
Confidence            732     33334443  2466655

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.41  E-value=1.9e-07  Score=94.08  Aligned_cols=81  Identities=19%  Similarity=0.167  Sum_probs=64.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC------CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCcee
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA------AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFD  362 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~------~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD  362 (496)
                      .+.+|||+|||+|.++..+++...      .+|+|+|+++.+++.|+.+....+   . ++.+.++|......  ...||
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g---~-~~~i~~~D~l~~~~--~~~fD  203 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR---Q-KMTLLHQDGLANLL--VDPVD  203 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT---C-CCEEEESCTTSCCC--CCCEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC---C-CceEEECCCCCccc--cCCcc
Confidence            467999999999999999887653      689999999999999987654322   2 67889999766432  57899


Q ss_pred             EEEEccccccccc
Q psy11730        363 IILTSETIYSVAN  375 (496)
Q Consensus       363 ~Ii~~~~l~~~~~  375 (496)
                      +|++++++.+++.
T Consensus       204 ~Ii~NPPfg~~~~  216 (344)
T 2f8l_A          204 VVISDLPVGYYPD  216 (344)
T ss_dssp             EEEEECCCSEESC
T ss_pred             EEEECCCCCCcCc
Confidence            9999999876643

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.41  E-value=3.6e-07  Score=92.48  Aligned_cols=85  Identities=22%  Similarity=0.149  Sum_probs=69.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .+.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++         ..++++..+|+.+ +.  . .||+|++.
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~--~-~~D~v~~~  258 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFK-SI--P-SADAVLLK  258 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTT-CC--C-CCSEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCC-CC--C-CceEEEEc
Confidence            457999999999999999998876 58999999 788877654         2459999999877 32  2 49999999


Q ss_pred             cccccccchH--hHhhee--eecC
Q psy11730        368 ETIYSVANYN--KLLTVW--CLFP  387 (496)
Q Consensus       368 ~~l~~~~~~~--~~~~~~--~l~p  387 (496)
                      .++|++++.+  .++++.  .|.|
T Consensus       259 ~vlh~~~d~~~~~~l~~~~~~L~p  282 (358)
T 1zg3_A          259 WVLHDWNDEQSLKILKNSKEAISH  282 (358)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHTGG
T ss_pred             ccccCCCHHHHHHHHHHHHHhCCC
Confidence            9999998877  777763  5666

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.40  E-value=2.7e-07  Score=89.41  Aligned_cols=97  Identities=11%  Similarity=0.025  Sum_probs=66.9

Q ss_pred             CCeEEEecCcC--CHHHHHHHH-c-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-----CCc
Q psy11730        290 KLSVLDVGCGA--GLLGLYTLM-N-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-----HSK  360 (496)
Q Consensus       290 ~~~VLDlGcGt--G~~~~~la~-~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~  360 (496)
                      ..+|||||||+  +.++..+++ . ...+|+++|.|+.|++.++.+....   ...+++|+++|+.+.....     ...
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~---~~~~~~~v~aD~~~~~~~l~~~~~~~~  155 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST---PEGRTAYVEADMLDPASILDAPELRDT  155 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC---SSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC---CCCcEEEEEecccChhhhhcccccccc
Confidence            36899999997  434444444 3 3379999999999999988654221   2357999999998863110     234


Q ss_pred             ee-----EEEEccccccccch---HhHhhee--eecCCC
Q psy11730        361 FD-----IILTSETIYSVANY---NKLLTVW--CLFPTH  389 (496)
Q Consensus       361 fD-----~Ii~~~~l~~~~~~---~~~~~~~--~l~p~~  389 (496)
                      ||     .|+++.+|||+++.   ..+++.+  .|.|++
T Consensus       156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG  194 (277)
T 3giw_A          156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGS  194 (277)
T ss_dssp             CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTC
T ss_pred             cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCc
Confidence            55     68899999999884   4566653  344444

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.37  E-value=3.6e-07  Score=93.20  Aligned_cols=81  Identities=21%  Similarity=0.197  Sum_probs=64.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccC------------CCCceEEEecccCCccc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTD------------NLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~------------~~~~v~~~~~d~~~~~~  355 (496)
                      .+.+|||+|||+|..++.+++. +..+|+++|+++.+++.++++...+...            ...+++++++|+.++..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            6789999999999999999987 5578999999999999998776443100            23459999999887654


Q ss_pred             cCCCceeEEEEccc
Q psy11730        356 VIHSKFDIILTSET  369 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~  369 (496)
                      ...+.||+|+.+++
T Consensus       127 ~~~~~fD~I~lDP~  140 (378)
T 2dul_A          127 ERHRYFHFIDLDPF  140 (378)
T ss_dssp             HSTTCEEEEEECCS
T ss_pred             hccCCCCEEEeCCC
Confidence            33468999998764

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.37  E-value=1.5e-07  Score=90.85  Aligned_cols=82  Identities=15%  Similarity=0.081  Sum_probs=60.8

Q ss_pred             CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccc--ccC----CCCceEEEecccCCccccCCCceeEE
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILM--NTD----NLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~--~~~----~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      .+|||+|||+|..++.++..|. +|+++|.++.+++.++......  +..    ...+++++++|..++.......||+|
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV  168 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence            7999999999999999998876 7999999998755544332110  100    11579999999887644333579999


Q ss_pred             EEccccccc
Q psy11730        365 LTSETIYSV  373 (496)
Q Consensus       365 i~~~~l~~~  373 (496)
                      ++++++.+-
T Consensus       169 ~lDP~y~~~  177 (258)
T 2oyr_A          169 YLDPMFPHK  177 (258)
T ss_dssp             EECCCCCCC
T ss_pred             EEcCCCCCc
Confidence            999998664

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.35  E-value=5e-07  Score=89.51  Aligned_cols=77  Identities=14%  Similarity=0.078  Sum_probs=61.5

Q ss_pred             CCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-CCCceeEEEEc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-IHSKFDIILTS  367 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~Ii~~  367 (496)
                      ..+|||||||+|.++..+++.. ..+|++||+++.|++.|+++....   ...+++++.+|..+.... ..++||+|+++
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~---~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D  166 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP---RAPRVKIRVDDARMVAESFTPASRDVIIRD  166 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC---CTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc---CCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence            3499999999999999999843 468999999999999998765321   356899999998776432 25789999996


Q ss_pred             cc
Q psy11730        368 ET  369 (496)
Q Consensus       368 ~~  369 (496)
                      ..
T Consensus       167 ~~  168 (317)
T 3gjy_A          167 VF  168 (317)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.34  E-value=8.9e-07  Score=89.90  Aligned_cols=87  Identities=18%  Similarity=0.084  Sum_probs=68.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ...+|||||||+|.++..+++..+ .+++++|+ +.+++.++.         ..+++|+.+|+.+ +.+ . . |+|++.
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~~p-~-~-D~v~~~  266 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFK-EVP-S-G-DTILMK  266 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCC-C-C-SEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCC-CCC-C-C-CEEEeh
Confidence            357999999999999999998766 68999999 889887664         2579999999887 432 2 3 999999


Q ss_pred             cccccccch--HhHhhee--eecCCC
Q psy11730        368 ETIYSVANY--NKLLTVW--CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~--~~~~~~~--~l~p~~  389 (496)
                      .++|++++.  ..++++.  .|.|++
T Consensus       267 ~vlh~~~d~~~~~~L~~~~~~L~pgG  292 (364)
T 3p9c_A          267 WILHDWSDQHCATLLKNCYDALPAHG  292 (364)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHSCTTC
T ss_pred             HHhccCCHHHHHHHHHHHHHHcCCCC
Confidence            999999654  4566653  556654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.34  E-value=7.1e-07  Score=93.26  Aligned_cols=80  Identities=14%  Similarity=-0.002  Sum_probs=63.4

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC-CceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH-SKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~fD~I  364 (496)
                      .++.+|||+|||+|..+..+++.. . .+|+|+|+|+.+++.++++....   +..++.++.+|+.+++.... +.||+|
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~---g~~~v~~~~~D~~~~~~~~~~~~fD~V  334 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM---GIKIVKPLVKDARKAPEIIGEEVADKV  334 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT---TCCSEEEECSCTTCCSSSSCSSCEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc---CCCcEEEEEcChhhcchhhccCCCCEE
Confidence            357899999999999999998853 3 68999999999999988765432   24579999999988753223 689999


Q ss_pred             EEcccc
Q psy11730        365 LTSETI  370 (496)
Q Consensus       365 i~~~~l  370 (496)
                      +++.+.
T Consensus       335 l~D~Pc  340 (450)
T 2yxl_A          335 LLDAPC  340 (450)
T ss_dssp             EEECCC
T ss_pred             EEcCCC
Confidence            986544

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.29  E-value=4.1e-07  Score=92.96  Aligned_cols=78  Identities=15%  Similarity=0.063  Sum_probs=63.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCc-eEEEecccCCccc-cCCCceeEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEK-CKFYHGDWGSLSA-VIHSKFDII  364 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-v~~~~~d~~~~~~-~~~~~fD~I  364 (496)
                      ++.+|||++||+|.+++.++..  |+.+|+++|+++.+++.++++...++  ...+ ++++.+|+.++.. ...+.||+|
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng--l~~~~v~v~~~Da~~~l~~~~~~~fD~V  129 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN--IPEDRYEIHGMEANFFLRKEWGFGFDYV  129 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHHHSCCSSCEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCceEEEEeCCHHHHHHHhhCCCCcEE
Confidence            4779999999999999998884  45899999999999999887764433  2234 9999999877654 335689999


Q ss_pred             EEcc
Q psy11730        365 LTSE  368 (496)
Q Consensus       365 i~~~  368 (496)
                      ++++
T Consensus       130 ~lDP  133 (392)
T 3axs_A          130 DLDP  133 (392)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9988

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.26  E-value=1.7e-07  Score=84.57  Aligned_cols=80  Identities=19%  Similarity=0.059  Sum_probs=65.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc--CCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV--IHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~Ii~  366 (496)
                      +|.+|||||||.               +++|+|+.|++.|+++.       ..++++..+|+++++..  .+++||+|++
T Consensus        12 ~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~-------~~~~~~~~~d~~~~~~~~~~~~~fD~V~~   69 (176)
T 2ld4_A           12 AGQFVAVVWDKS---------------SPVEALKGLVDKLQALT-------GNEGRVSVENIKQLLQSAHKESSFDIILS   69 (176)
T ss_dssp             TTSEEEEEECTT---------------SCHHHHHHHHHHHHHHT-------TTTSEEEEEEGGGGGGGCCCSSCEEEEEE
T ss_pred             CCCEEEEecCCc---------------eeeeCCHHHHHHHHHhc-------ccCcEEEEechhcCccccCCCCCEeEEEE
Confidence            588999999996               23999999999998764       12489999999988751  3689999999


Q ss_pred             ccccccc-cchHhHhhe--eeecCCCC
Q psy11730        367 SETIYSV-ANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       367 ~~~l~~~-~~~~~~~~~--~~l~p~~~  390 (496)
                      ..+++|+ ++...++++  ..|.|+|.
T Consensus        70 ~~~l~~~~~~~~~~l~~~~r~LkpgG~   96 (176)
T 2ld4_A           70 GLVPGSTTLHSAEILAEIARILRPGGC   96 (176)
T ss_dssp             CCSTTCCCCCCHHHHHHHHHHEEEEEE
T ss_pred             CChhhhcccCHHHHHHHHHHHCCCCEE
Confidence            9999999 899888887  36777763

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.25  E-value=2.5e-06  Score=84.57  Aligned_cols=80  Identities=13%  Similarity=0.073  Sum_probs=63.8

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--CCceeE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--HSKFDI  363 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~  363 (496)
                      .++.+|||+|||+|..++.+++.  +..+|+|+|+++.+++.++++....+   ..+++++.+|+.++....  ...||+
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g---~~~v~~~~~D~~~~~~~~~~~~~fD~  177 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSDPRYHEVHY  177 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCChHhcCccccccCCCCE
Confidence            35789999999999999999875  34799999999999999887754432   467999999988765421  157999


Q ss_pred             EEEcccc
Q psy11730        364 ILTSETI  370 (496)
Q Consensus       364 Ii~~~~l  370 (496)
                      |+++.+.
T Consensus       178 Vl~D~Pc  184 (309)
T 2b9e_A          178 ILLDPSC  184 (309)
T ss_dssp             EEECCCC
T ss_pred             EEEcCCc
Confidence            9987654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.23  E-value=3.6e-06  Score=84.99  Aligned_cols=104  Identities=17%  Similarity=0.138  Sum_probs=76.8

Q ss_pred             HHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        279 LNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       279 ~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      +..+....++. ..+|||||||+|.++..+++..+ .+++..|. +.+++.+++....   ....+|+|+.+|+.+.+  
T Consensus       168 ~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~---~~~~rv~~~~gD~~~~~--  241 (353)
T 4a6d_A          168 GRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF---QEEEQIDFQEGDFFKDP--  241 (353)
T ss_dssp             HHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSC--
T ss_pred             HHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh---cccCceeeecCccccCC--
Confidence            34444444444 57999999999999999999887 57888887 7889888765422   23678999999987643  


Q ss_pred             CCCceeEEEEccccccccchH--hHhhee--eecCCC
Q psy11730        357 IHSKFDIILTSETIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                       ...+|+|++..++|++++.+  .++++.  .|.|++
T Consensus       242 -~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg  277 (353)
T 4a6d_A          242 -LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGG  277 (353)
T ss_dssp             -CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTC
T ss_pred             -CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCC
Confidence             34689999999999998764  456552  455654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.22  E-value=1.3e-06  Score=90.63  Aligned_cols=80  Identities=19%  Similarity=0.106  Sum_probs=63.6

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii  365 (496)
                      .++.+|||+|||+|..+..+++.+. .+|+|+|+|+.+++.++++....+    .++.++.+|+.++.. ...+.||+|+
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g----~~~~~~~~D~~~~~~~~~~~~fD~Vl  320 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRYPSQWCGEQQFDRIL  320 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTCTHHHHTTCCEEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC----CCeEEEeCchhhchhhcccCCCCEEE
Confidence            3578999999999999999998765 799999999999999887654332    247889999887753 1246899999


Q ss_pred             Eccccc
Q psy11730        366 TSETIY  371 (496)
Q Consensus       366 ~~~~l~  371 (496)
                      ++.+..
T Consensus       321 ~D~Pcs  326 (429)
T 1sqg_A          321 LDAPCS  326 (429)
T ss_dssp             EECCCC
T ss_pred             EeCCCC
Confidence            866543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.18  E-value=1.7e-06  Score=90.25  Aligned_cols=94  Identities=16%  Similarity=0.129  Sum_probs=68.5

Q ss_pred             HHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHc--------------cCCeEEEEeCCHHHHHHhcCcccccccCCCCc
Q psy11730        278 LLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMN--------------GAAHVSFQDYNQEVIESLTLPNILMNTDNLEK  342 (496)
Q Consensus       278 l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~--------------~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~  342 (496)
                      +++.+.+... ..+.+|||.|||+|.+.+.+++.              ....++|+|+++.+++.|+.+....+. ...+
T Consensus       159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~-~~~~  237 (445)
T 2okc_A          159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI-GTDR  237 (445)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC-CSSC
T ss_pred             HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC-CcCC
Confidence            4444444433 34679999999999999998764              236799999999999998865433221 1126


Q ss_pred             eEEEecccCCccccCCCceeEEEEcccccccc
Q psy11730        343 CKFYHGDWGSLSAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       343 v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      +.+.++|....+.  ...||+|++++|+....
T Consensus       238 ~~i~~gD~l~~~~--~~~fD~Iv~NPPf~~~~  267 (445)
T 2okc_A          238 SPIVCEDSLEKEP--STLVDVILANPPFGTRP  267 (445)
T ss_dssp             CSEEECCTTTSCC--SSCEEEEEECCCSSCCC
T ss_pred             CCEeeCCCCCCcc--cCCcCEEEECCCCCCcc
Confidence            7888999776554  35899999999998754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.08  E-value=8.6e-06  Score=89.54  Aligned_cols=96  Identities=20%  Similarity=0.167  Sum_probs=72.1

Q ss_pred             hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC-----------------------------------------
Q psy11730        275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA-----------------------------------------  312 (496)
Q Consensus       275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~-----------------------------------------  312 (496)
                      ...|+..+..... ..+..|||.+||+|.+.+.++..+.                                         
T Consensus       175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~  254 (703)
T 3v97_A          175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE  254 (703)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence            3456666555544 3577999999999999999876531                                         


Q ss_pred             --CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-CCceeEEEEcccccc
Q psy11730        313 --AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-HSKFDIILTSETIYS  372 (496)
Q Consensus       313 --~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~~~l~~  372 (496)
                        ..|+|+|+++.|++.|+.+....+  ....++|.++|+.++.... .+.||+|++++|+..
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~ag--v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~  315 (703)
T 3v97_A          255 YSSHFYGSDSDARVIQRARTNARLAG--IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGE  315 (703)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhCccccccCCCCEEEeCCCccc
Confidence              479999999999999987754432  3346999999998875432 238999999999854

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.08  E-value=2.5e-06  Score=91.88  Aligned_cols=81  Identities=15%  Similarity=0.047  Sum_probs=59.1

Q ss_pred             CCCCeEEEecCcCCHHHHHHHH---ccCC--eEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCcee
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLM---NGAA--HVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFD  362 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~---~~~~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD  362 (496)
                      ..+..|||||||+|.+..+.++   .+..  +|+|||.|+.+ ..+++.. ..| +-...|+++++|++++..  .+++|
T Consensus       356 ~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A-~~a~~~v-~~N-~~~dkVtVI~gd~eev~L--PEKVD  430 (637)
T 4gqb_A          356 TNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA-VVTLENW-QFE-EWGSQVTVVSSDMREWVA--PEKAD  430 (637)
T ss_dssp             TCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH-HHHHHHH-HHH-TTGGGEEEEESCTTTCCC--SSCEE
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH-HHHHHHH-Hhc-cCCCeEEEEeCcceeccC--CcccC
Confidence            3456899999999999555444   4433  68999999854 4444432 222 346789999999999876  58999


Q ss_pred             EEEEccccccc
Q psy11730        363 IILTSETIYSV  373 (496)
Q Consensus       363 ~Ii~~~~l~~~  373 (496)
                      +|||..+-++.
T Consensus       431 IIVSEwMG~fL  441 (637)
T 4gqb_A          431 IIVSELLGSFA  441 (637)
T ss_dssp             EEECCCCBTTB
T ss_pred             EEEEEcCcccc
Confidence            99997776655

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.00  E-value=8.5e-06  Score=70.58  Aligned_cols=87  Identities=15%  Similarity=0.119  Sum_probs=61.7

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCC-HHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAG-LLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG-~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .|+++|.+... .+.+|||||||.| ..+..|++.....|+++|+|+..++                  |++.|+-+...
T Consensus        24 ~LaeYI~~~~~-~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~------------------~v~dDiF~P~~   84 (153)
T 2k4m_A           24 DLAVYIIRCSG-PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG------------------IVRDDITSPRM   84 (153)
T ss_dssp             HHHHHHHHHSC-SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT------------------EECCCSSSCCH
T ss_pred             HHHHHHHhcCC-CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc------------------eEEccCCCCcc
Confidence            46666665542 4679999999999 6999999744457999999986654                  47777765433


Q ss_pred             cCCCceeEEEE-ccccccccchHhHhhe
Q psy11730        356 VIHSKFDIILT-SETIYSVANYNKLLTV  382 (496)
Q Consensus       356 ~~~~~fD~Ii~-~~~l~~~~~~~~~~~~  382 (496)
                      ..-..||+|.+ +++.+..+..-.+-+.
T Consensus        85 ~~Y~~~DLIYsirPP~El~~~i~~lA~~  112 (153)
T 2k4m_A           85 EIYRGAALIYSIRPPAEIHSSLMRVADA  112 (153)
T ss_dssp             HHHTTEEEEEEESCCTTTHHHHHHHHHH
T ss_pred             cccCCcCEEEEcCCCHHHHHHHHHHHHH
Confidence            21258999955 7777666666665554

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.87  E-value=2.4e-05  Score=83.22  Aligned_cols=97  Identities=14%  Similarity=0.031  Sum_probs=69.9

Q ss_pred             hHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHc----cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        275 TFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMN----GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       275 ~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~----~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      +..|++.+.... +..+.+|||.+||||.+.+.+++.    +...++|+|+++.++..|+.+....+ ....++.+.++|
T Consensus       206 v~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~~~~I~~gD  284 (542)
T 3lkd_A          206 AKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG-VPIENQFLHNAD  284 (542)
T ss_dssp             HHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEESC
T ss_pred             HHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC-CCcCccceEecc
Confidence            344555555332 235779999999999999988765    24689999999999999886543322 112567889998


Q ss_pred             cCCc--cccCCCceeEEEEcccccc
Q psy11730        350 WGSL--SAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       350 ~~~~--~~~~~~~fD~Ii~~~~l~~  372 (496)
                      ....  +......||+|++++|+..
T Consensus       285 tL~~d~p~~~~~~fD~IvaNPPf~~  309 (542)
T 3lkd_A          285 TLDEDWPTQEPTNFDGVLMNPPYSA  309 (542)
T ss_dssp             TTTSCSCCSSCCCBSEEEECCCTTC
T ss_pred             eecccccccccccccEEEecCCcCC
Confidence            7655  3333578999999999863

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.85  E-value=1.2e-05  Score=85.64  Aligned_cols=84  Identities=13%  Similarity=-0.038  Sum_probs=62.7

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-------------------CCeEEEEeCCHHHHHHhcCcccccccCCCCc-----e
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-------------------AAHVSFQDYNQEVIESLTLPNILMNTDNLEK-----C  343 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-------------------~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-----v  343 (496)
                      ..+.+|||.|||||.+.+.+++..                   ...++|+|+++.++..|+.+....+   ..+     +
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g---i~~~~~~~~  244 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD---IEGNLDHGG  244 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT---CCCBGGGTB
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC---CCccccccC
Confidence            347799999999999999877531                   2479999999999999886543322   222     7


Q ss_pred             EEEecccCCccccCCCceeEEEEcccccccc
Q psy11730        344 KFYHGDWGSLSAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       344 ~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      .+.++|....+......||+|++++|+....
T Consensus       245 ~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~  275 (541)
T 2ar0_A          245 AIRLGNTLGSDGENLPKAHIVATNPPFGSAA  275 (541)
T ss_dssp             SEEESCTTSHHHHTSCCEEEEEECCCCTTCS
T ss_pred             CeEeCCCcccccccccCCeEEEECCCccccc
Confidence            7888887654432246899999999987653

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.81  E-value=2e-05  Score=76.08  Aligned_cols=87  Identities=20%  Similarity=0.094  Sum_probs=66.3

Q ss_pred             HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      |++.+.+...+ ++..+||.+||.|.++..+++. ..+|+|+|.++.+++.+++ ...      .+++++++++.++...
T Consensus        10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~~   81 (285)
T 1wg8_A           10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKRH   81 (285)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHHH
Confidence            33444443333 5789999999999999999998 5689999999999999886 311      5899999999987542


Q ss_pred             C----CCceeEEEEcccccc
Q psy11730        357 I----HSKFDIILTSETIYS  372 (496)
Q Consensus       357 ~----~~~fD~Ii~~~~l~~  372 (496)
                      .    .+++|.|+++.-+..
T Consensus        82 L~~~g~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           82 LAALGVERVDGILADLGVSS  101 (285)
T ss_dssp             HHHTTCSCEEEEEEECSCCH
T ss_pred             HHHcCCCCcCEEEeCCcccc
Confidence            1    257999998654443

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}

Probab=97.80  E-value=6.7e-05  Score=73.84  Aligned_cols=45  Identities=22%  Similarity=0.266  Sum_probs=40.1

Q ss_pred             CCCchhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCCCChh
Q psy11730        428 EWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFP  472 (496)
Q Consensus       428 ~~~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~~~~  472 (496)
                      +...+.++|+|||.++++.|-.|.|.|.+-|+.+..|+...+.++
T Consensus       275 gIPvyr~~QkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~q  319 (332)
T 2xxz_A          275 NIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQ  319 (332)
T ss_dssp             TCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEESCTTGG
T ss_pred             CCCeEEEEECCCCEEEECCCceEEEEecceeeEEEEEeCCCcHHH
Confidence            455678899999999999999999999999999999999887653

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.79  E-value=3.8e-05  Score=83.91  Aligned_cols=84  Identities=14%  Similarity=0.081  Sum_probs=58.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC----CeEEEEeCCHHHHHHh--cCccccccc-CCCCceEEEecccCCccccCCCce
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA----AHVSFQDYNQEVIESL--TLPNILMNT-DNLEKCKFYHGDWGSLSAVIHSKF  361 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~----~~v~giD~s~~~i~~a--~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~f  361 (496)
                      .+.+|||.|||+|.+.+.++....    .+++|+|+++.+++.|  +.+...+.. .......+...|+..........|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            577999999999999999887653    5799999999999988  322211110 122334555566655332225789


Q ss_pred             eEEEEcccccc
Q psy11730        362 DIILTSETIYS  372 (496)
Q Consensus       362 D~Ii~~~~l~~  372 (496)
                      |+|++++|+..
T Consensus       401 DVVIgNPPYg~  411 (878)
T 3s1s_A          401 SVVVMNPPYVS  411 (878)
T ss_dssp             EEEEECCBCCS
T ss_pred             CEEEECCCccc
Confidence            99999999943

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.74  E-value=1.6e-05  Score=84.69  Aligned_cols=94  Identities=13%  Similarity=-0.025  Sum_probs=63.9

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHcc----------------CCeEEEEeCCHHHHHHhcCcccccccCCC
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNG----------------AAHVSFQDYNQEVIESLTLPNILMNTDNL  340 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~----------------~~~v~giD~s~~~i~~a~~~~~~~~~~~~  340 (496)
                      .++++|.+.......+|||.+||||.+.+.+++.-                ...++|+|+++.++..|+.+....+  ..
T Consensus       232 ~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g--i~  309 (544)
T 3khk_A          232 SIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG--ID  309 (544)
T ss_dssp             HHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT--CC
T ss_pred             HHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC--CC
Confidence            34444444333344499999999999988865421                3479999999999999887654332  12


Q ss_pred             CceEEEecccCCccccCCCceeEEEEcccccc
Q psy11730        341 EKCKFYHGDWGSLSAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       341 ~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~  372 (496)
                      .++.+.++|....+......||+|++++|+..
T Consensus       310 ~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          310 FNFGKKNADSFLDDQHPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSC
T ss_pred             cccceeccchhcCcccccccccEEEECCCcCC
Confidence            23444677755444333578999999999875

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.73  E-value=2e-05  Score=84.82  Aligned_cols=81  Identities=19%  Similarity=0.187  Sum_probs=59.8

Q ss_pred             CCeEEEecCcCCHHHHHHH--H--cc----------CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        290 KLSVLDVGCGAGLLGLYTL--M--NG----------AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la--~--~~----------~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      ++.|||||||+|.++.+++  .  .+          ..+|+|||.|+.++..++..+.  | +-...|+++++|++++..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~--N-g~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV--R-TWKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH--H-TTTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh--c-CCCCeEEEEeCchhhccc
Confidence            4589999999999975432  2  22          2499999999987766554442  2 234679999999999865


Q ss_pred             c----CCCceeEEEEccccccc
Q psy11730        356 V----IHSKFDIILTSETIYSV  373 (496)
Q Consensus       356 ~----~~~~fD~Ii~~~~l~~~  373 (496)
                      +    ..+++|+|||..+-++.
T Consensus       487 p~~~~~~ekVDIIVSElmGsfl  508 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSELLGSFG  508 (745)
T ss_dssp             HHHHTTCCCCSEEEECCCBTTB
T ss_pred             ccccCCCCcccEEEEecccccc
Confidence            2    14789999998887654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.67  E-value=6.2e-05  Score=73.65  Aligned_cols=73  Identities=19%  Similarity=0.311  Sum_probs=51.2

Q ss_pred             HHHHHHH-hCCCC-CCCeEEEecCcC------CHHHHHHHH-cc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEE-
Q psy11730        277 DLLNFIK-DNVAV-DKLSVLDVGCGA------GLLGLYTLM-NG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKF-  345 (496)
Q Consensus       277 ~l~~~l~-~~~~~-~~~~VLDlGcGt------G~~~~~la~-~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~-  345 (496)
                      .+.+++. ....+ ++.+|||||||+      |.  ..+++ .+ ..+|+|+|+|+. +               .+++| 
T Consensus        49 ~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------------~~v~~~  110 (290)
T 2xyq_A           49 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------------SDADST  110 (290)
T ss_dssp             HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------------CSSSEE
T ss_pred             HHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------------CCCEEE
Confidence            3555653 23333 477999999955      66  33344 34 278999999987 1               25788 


Q ss_pred             EecccCCccccCCCceeEEEEccc
Q psy11730        346 YHGDWGSLSAVIHSKFDIILTSET  369 (496)
Q Consensus       346 ~~~d~~~~~~~~~~~fD~Ii~~~~  369 (496)
                      +++|+.+++.  .++||+|+++.+
T Consensus       111 i~gD~~~~~~--~~~fD~Vvsn~~  132 (290)
T 2xyq_A          111 LIGDCATVHT--ANKWDLIISDMY  132 (290)
T ss_dssp             EESCGGGCCC--SSCEEEEEECCC
T ss_pred             EECccccCCc--cCcccEEEEcCC
Confidence            9999988654  478999999754

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.59  E-value=8.5e-05  Score=71.28  Aligned_cols=94  Identities=16%  Similarity=0.025  Sum_probs=63.6

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      ..+++.|.+.......-.+.+|||||||.|.++..+++. +...|+|+|++.++.......     .....++..+..++
T Consensus        57 SRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-----~~~g~~ii~~~~~~  131 (277)
T 3evf_A           57 SRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-----QSLGWNIITFKDKT  131 (277)
T ss_dssp             STHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-----CBTTGGGEEEECSC
T ss_pred             ccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-----CcCCCCeEEEeccc
Confidence            667888999888844445679999999999999998775 557899999986541111110     00122555566665


Q ss_pred             CCccccCCCceeEEEEccccc
Q psy11730        351 GSLSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~  371 (496)
                      +..... .+.||+|+|..+..
T Consensus       132 dv~~l~-~~~~DlVlsD~apn  151 (277)
T 3evf_A          132 DIHRLE-PVKCDTLLCDIGES  151 (277)
T ss_dssp             CTTTSC-CCCCSEEEECCCCC
T ss_pred             eehhcC-CCCccEEEecCccC
Confidence            433332 57899999977555

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.57  E-value=8.7e-05  Score=71.32  Aligned_cols=94  Identities=13%  Similarity=0.005  Sum_probs=62.9

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHH-ccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLM-NGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~-~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      ..+++.|.+...+....++.+|||||||.|.++..+++ .+...|+|+|++..+...+....     ....++.....+.
T Consensus        73 SRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~-----~~g~~ii~~~~~~  147 (282)
T 3gcz_A           73 SRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRT-----TLGWNLIRFKDKT  147 (282)
T ss_dssp             STHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCC-----BTTGGGEEEECSC
T ss_pred             cHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccc-----cCCCceEEeeCCc
Confidence            56788899999887444577999999999999999875 45578999999876533222100     0123444444333


Q ss_pred             CCccccCCCceeEEEEccccc
Q psy11730        351 GSLSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~  371 (496)
                      +-... ....+|+|+|..+..
T Consensus       148 dv~~l-~~~~~DvVLSDmApn  167 (282)
T 3gcz_A          148 DVFNM-EVIPGDTLLCDIGES  167 (282)
T ss_dssp             CGGGS-CCCCCSEEEECCCCC
T ss_pred             chhhc-CCCCcCEEEecCccC
Confidence            32222 257899999977665

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*

Probab=97.56  E-value=0.00024  Score=74.13  Aligned_cols=45  Identities=20%  Similarity=0.245  Sum_probs=39.6

Q ss_pred             CCCchhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCCCChh
Q psy11730        428 EWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHTNFP  472 (496)
Q Consensus       428 ~~~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~~~~  472 (496)
                      +...+.++|+|||.++++.|-.|.|.|.+-++++..||...+.++
T Consensus       334 gIPvyr~vQkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~q  378 (531)
T 3avr_A          334 NVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQ  378 (531)
T ss_dssp             TCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCSSHHH
T ss_pred             CCCeEEEEECCCCEEEECCCceEEEEecceeeeeEEEeccCchHH
Confidence            445577899999999999999999999999999999999887554

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.32  E-value=0.00018  Score=70.59  Aligned_cols=58  Identities=12%  Similarity=-0.050  Sum_probs=47.2

Q ss_pred             hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccc
Q psy11730        275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNI  333 (496)
Q Consensus       275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~  333 (496)
                      ...|++.+......++..|||++||+|.+++.+++.| .+++|+|+++.+++.|+++..
T Consensus       221 p~~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g-~~~~g~e~~~~~~~~a~~r~~  278 (297)
T 2zig_A          221 PLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWG-RRALGVELVPRYAQLAKERFA  278 (297)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHH
Confidence            3456666655545578899999999999999977776 589999999999999987753

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.32  E-value=0.00045  Score=69.28  Aligned_cols=74  Identities=12%  Similarity=0.112  Sum_probs=56.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      -+|.+||||||+.|.++..++++|. .|+|||+.+ |-..+.         ..++|+++.+|....... ...||+|+|.
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~~l~---------~~~~V~~~~~d~~~~~~~-~~~~D~vvsD  277 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQSLM---------DTGQVTWLREDGFKFRPT-RSNISWMVCD  277 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCHHHH---------TTTCEEEECSCTTTCCCC-SSCEEEEEEC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cChhhc---------cCCCeEEEeCccccccCC-CCCcCEEEEc
Confidence            3588999999999999999998875 899999764 211111         256899999998876653 4689999998


Q ss_pred             cccccc
Q psy11730        368 ETIYSV  373 (496)
Q Consensus       368 ~~l~~~  373 (496)
                      .+.+..
T Consensus       278 m~~~p~  283 (375)
T 4auk_A          278 MVEKPA  283 (375)
T ss_dssp             CSSCHH
T ss_pred             CCCChH
Confidence            776543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.31  E-value=0.00062  Score=62.77  Aligned_cols=79  Identities=11%  Similarity=0.058  Sum_probs=58.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc---------------
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL---------------  353 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~---------------  353 (496)
                      +.++|||+||  |..++.+|+...++|+.+|.+++..+.++++....+.....+++++.+|+.+.               
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            4679999998  57888888753579999999999999988765433211156899999996543               


Q ss_pred             cc-------c-CCCceeEEEEccc
Q psy11730        354 SA-------V-IHSKFDIILTSET  369 (496)
Q Consensus       354 ~~-------~-~~~~fD~Ii~~~~  369 (496)
                      +.       . ..++||+|+....
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~  131 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGR  131 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSS
T ss_pred             HHHhhhhhccccCCCCCEEEEeCC
Confidence            11       1 1368999999775

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.15  E-value=0.00065  Score=63.36  Aligned_cols=89  Identities=24%  Similarity=0.244  Sum_probs=62.7

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHH-ccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEec-c
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLM-NGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHG-D  349 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~-~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~-d  349 (496)
                      ..+++.|.+.........+..||||||+.|.++..++. .++.+|+|+|+...-.+.-+.    .....-+.++|..+ |
T Consensus        61 SRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~----~~s~gwn~v~fk~gvD  136 (267)
T 3p8z_A           61 SRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVP----MSTYGWNIVKLMSGKD  136 (267)
T ss_dssp             STHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC----CCCTTTTSEEEECSCC
T ss_pred             chHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcch----hhhcCcCceEEEeccc
Confidence            55677888888777444577999999999999998775 455889999987543321000    01123467889988 8


Q ss_pred             cCCccccCCCceeEEEEc
Q psy11730        350 WGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       350 ~~~~~~~~~~~fD~Ii~~  367 (496)
                      +..++   ...+|+|+|.
T Consensus       137 v~~~~---~~~~DtllcD  151 (267)
T 3p8z_A          137 VFYLP---PEKCDTLLCD  151 (267)
T ss_dssp             GGGCC---CCCCSEEEEC
T ss_pred             eeecC---CccccEEEEe
Confidence            76555   3669999994

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.13  E-value=0.0014  Score=63.90  Aligned_cols=81  Identities=15%  Similarity=0.104  Sum_probs=67.0

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc--cCCCCceEEEecccCCccccCCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN--TDNLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      ...++||=||-|.|..+..+++... .+|+.+|+++++++.+++.....+  ....++++++.+|.........++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            4678999999999999999888654 899999999999999987754433  2346899999999888776556899999


Q ss_pred             EEcc
Q psy11730        365 LTSE  368 (496)
Q Consensus       365 i~~~  368 (496)
                      +...
T Consensus       162 i~D~  165 (294)
T 3o4f_A          162 ISDC  165 (294)
T ss_dssp             EESC
T ss_pred             EEeC
Confidence            9854

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.96  E-value=0.0013  Score=63.63  Aligned_cols=94  Identities=14%  Similarity=-0.000  Sum_probs=60.6

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHc-cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMN-GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~-~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      ..+++.|.+...+.+..++.+||||||+.|.++..+++. +...|+|+|+...+.......     .....++.....+.
T Consensus        64 SRaa~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~-----~~~~~~iv~~~~~~  138 (300)
T 3eld_A           64 SRGAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHM-----QTLGWNIVKFKDKS  138 (300)
T ss_dssp             STTHHHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-----CBTTGGGEEEECSC
T ss_pred             chHHHHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccc-----cccCCceEEeecCc
Confidence            667888999998844456889999999999999999875 557899999976532111100     00112333333322


Q ss_pred             CCccccCCCceeEEEEccccc
Q psy11730        351 GSLSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~  371 (496)
                      +-... ..+.+|+|+|..+-.
T Consensus       139 di~~l-~~~~~DlVlsD~APn  158 (300)
T 3eld_A          139 NVFTM-PTEPSDTLLCDIGES  158 (300)
T ss_dssp             CTTTS-CCCCCSEEEECCCCC
T ss_pred             eeeec-CCCCcCEEeecCcCC
Confidence            21111 157899999976655

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.87  E-value=0.0014  Score=63.13  Aligned_cols=96  Identities=18%  Similarity=0.093  Sum_probs=63.0

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHH-ccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEec-c
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLM-NGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHG-D  349 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~-~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~-d  349 (496)
                      ..+++.|.+.........+..||||||++|.++.+++. .++..|+|+|+...-.+.-...    ....-..|.|..+ |
T Consensus        77 SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~----~ql~w~lV~~~~~~D  152 (321)
T 3lkz_A           77 SRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLV----QSYGWNIVTMKSGVD  152 (321)
T ss_dssp             STHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCC----CBTTGGGEEEECSCC
T ss_pred             chHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchh----hhcCCcceEEEeccC
Confidence            56677888888775444577999999999999997765 4558899999876422100000    0011123666766 7


Q ss_pred             cCCccccCCCceeEEEEccccccccc
Q psy11730        350 WGSLSAVIHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       350 ~~~~~~~~~~~fD~Ii~~~~l~~~~~  375 (496)
                      +..+..   ..+|+|+|.-. ..-++
T Consensus       153 v~~l~~---~~~D~ivcDig-eSs~~  174 (321)
T 3lkz_A          153 VFYRPS---ECCDTLLCDIG-ESSSS  174 (321)
T ss_dssp             TTSSCC---CCCSEEEECCC-CCCSC
T ss_pred             HhhCCC---CCCCEEEEECc-cCCCC
Confidence            666553   66999999655 54444

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.85  E-value=0.00058  Score=65.96  Aligned_cols=97  Identities=14%  Similarity=0.064  Sum_probs=73.0

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc---cCCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA---VIHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~fD~I  364 (496)
                      +.+..+||+.+|||.+++.+.. +..+++.+|.++..+...+++..     ...++++++.|......   .+...||+|
T Consensus        90 ~n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~-----~~~~~~V~~~D~~~~L~~l~~~~~~fdLV  163 (283)
T 2oo3_A           90 INLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPH-----FNKKVYVNHTDGVSKLNALLPPPEKRGLI  163 (283)
T ss_dssp             HSSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCC-----TTSCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred             hcCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhC-----cCCcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence            3567899999999999999666 66999999999999998887653     24689999999654322   223579999


Q ss_pred             EEccccccccchHhHhhe----eeecCCCC
Q psy11730        365 LTSETIYSVANYNKLLTV----WCLFPTHT  390 (496)
Q Consensus       365 i~~~~l~~~~~~~~~~~~----~~l~p~~~  390 (496)
                      +..+++..-.+.+.+++.    ..++|.+.
T Consensus       164 fiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi  193 (283)
T 2oo3_A          164 FIDPSYERKEEYKEIPYAIKNAYSKFSTGL  193 (283)
T ss_dssp             EECCCCCSTTHHHHHHHHHHHHHHHCTTSE
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCccCCCeE
Confidence            999999865556555532    35666653

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.79  E-value=0.0022  Score=63.27  Aligned_cols=96  Identities=18%  Similarity=0.171  Sum_probs=69.3

Q ss_pred             HHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        278 LLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       278 l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      |++.+.+... .+|..++|..||.|..+..+++. ++ .+|+|+|.++++++.++ +.      ...+++++++++.++.
T Consensus        45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL------~~~Rv~lv~~nF~~l~  117 (347)
T 3tka_A           45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI------DDPRFSIIHGPFSALG  117 (347)
T ss_dssp             TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC------CCTTEEEEESCGGGHH
T ss_pred             cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh------cCCcEEEEeCCHHHHH
Confidence            3344444433 45889999999999999999876 44 79999999999999984 32      2468999999988875


Q ss_pred             ccC-----CCceeEEEEccccccc--cchHhHh
Q psy11730        355 AVI-----HSKFDIILTSETIYSV--ANYNKLL  380 (496)
Q Consensus       355 ~~~-----~~~fD~Ii~~~~l~~~--~~~~~~~  380 (496)
                      ...     .+++|.|+.+.-+..+  .+.+.=|
T Consensus       118 ~~L~~~g~~~~vDgILfDLGVSS~QlD~~eRGF  150 (347)
T 3tka_A          118 EYVAERDLIGKIDGILLDLGVSSPQLDDAERGF  150 (347)
T ss_dssp             HHHHHTTCTTCEEEEEEECSCCHHHHHCGGGCC
T ss_pred             HHHHhcCCCCcccEEEECCccCHHHhcCCCCCC
Confidence            422     1369999986655433  4544433

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.61  E-value=0.0019  Score=65.40  Aligned_cols=76  Identities=20%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-------CCCceeE
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-------IHSKFDI  363 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~fD~  363 (496)
                      -+|+||.||.|.+++-+.+.|...|.++|+++.+++..+.+.        ++..++.+|+.++...       ....+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~--------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF--------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC--------TTSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC--------CCCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            379999999999999999999988999999999998766542        3567788888876431       1367999


Q ss_pred             EEEcccccccc
Q psy11730        364 ILTSETIYSVA  374 (496)
Q Consensus       364 Ii~~~~l~~~~  374 (496)
                      |+..++...++
T Consensus        75 i~ggpPCQ~fS   85 (376)
T 3g7u_A           75 IIGGPPCQGFS   85 (376)
T ss_dssp             EEECCCCCTTC
T ss_pred             EEecCCCCCcc
Confidence            99999977664

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.56  E-value=0.0012  Score=66.02  Aligned_cols=76  Identities=20%  Similarity=0.138  Sum_probs=56.4

Q ss_pred             CeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC-C-CceeEEEE
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI-H-SKFDIILT  366 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~-~~fD~Ii~  366 (496)
                      .+||||.||.|.+++.+...|  ...|.++|+++.+++..+.+.        .+..++.+|+.++.... . ..+|+|+.
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~--------~~~~~~~~Di~~~~~~~~~~~~~D~l~~   74 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc--------cccccccCCHHHccHhHcCcCCcCEEEE
Confidence            479999999999999999988  468999999999999877653        23456788888764311 1 26999999


Q ss_pred             cccccccc
Q psy11730        367 SETIYSVA  374 (496)
Q Consensus       367 ~~~l~~~~  374 (496)
                      .++...++
T Consensus        75 gpPCq~fS   82 (343)
T 1g55_A           75 SPPCQPFT   82 (343)
T ss_dssp             CCC-----
T ss_pred             cCCCcchh
Confidence            99976664

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=96.55  E-value=0.0032  Score=60.37  Aligned_cols=80  Identities=15%  Similarity=0.116  Sum_probs=52.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-------cC------CeEEEEeCCH---HHHHHhcCc-----------ccc-------
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-------GA------AHVSFQDYNQ---EVIESLTLP-----------NIL-------  334 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-------~~------~~v~giD~s~---~~i~~a~~~-----------~~~-------  334 (496)
                      ++.+|||||||+|..++.+++.       ++      .+++++|..+   +++..+...           ...       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3468999999999999997654       33      4899999766   555543221           100       


Q ss_pred             ---c-ccCCCCceEEEecccCCccccCCC----ceeEEEEcc
Q psy11730        335 ---M-NTDNLEKCKFYHGDWGSLSAVIHS----KFDIILTSE  368 (496)
Q Consensus       335 ---~-~~~~~~~v~~~~~d~~~~~~~~~~----~fD~Ii~~~  368 (496)
                         . -.....+++++.+|+.+.......    .||+|+...
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~  181 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG  181 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC
Confidence               0 011235788999998875433233    799999964

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.50  E-value=0.004  Score=61.87  Aligned_cols=76  Identities=17%  Similarity=0.118  Sum_probs=59.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      .+.+|+||.||.|.+++.+...|...|.++|+++.+++..+.+...        .  ..+|+.++....-..+|+|+..+
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~--------~--~~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--------K--PEGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--------C--CBSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC--------C--CcCCHHHcCHhhCCCCCEEEECC
Confidence            4568999999999999999999999999999999999887655311        1  15777766543234699999999


Q ss_pred             cccccc
Q psy11730        369 TIYSVA  374 (496)
Q Consensus       369 ~l~~~~  374 (496)
                      +...++
T Consensus        80 PCQ~fS   85 (327)
T 2c7p_A           80 PCQAFS   85 (327)
T ss_dssp             CCTTTC
T ss_pred             CCCCcc
Confidence            888774

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.48  E-value=0.0023  Score=61.34  Aligned_cols=57  Identities=21%  Similarity=0.134  Sum_probs=46.8

Q ss_pred             hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcc
Q psy11730        275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN  332 (496)
Q Consensus       275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~  332 (496)
                      ...|++.+.+....++..|||.+||+|..++.+.+.| .+++|+|+++.+++.++++.
T Consensus       198 p~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~  254 (260)
T 1g60_A          198 PRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVL  254 (260)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHH
Confidence            4566666665555678899999999999999977666 68999999999999988765

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.45  E-value=0.0041  Score=65.92  Aligned_cols=93  Identities=16%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHcc--------------CCeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNG--------------AAHVSFQDYNQEVIESLTLPNILMNTDNLE  341 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~--------------~~~v~giD~s~~~i~~a~~~~~~~~~~~~~  341 (496)
                      .+++++.+... ..+.+|+|-+||||.+.+.+...-              ...++|+|+++.++..|+-+....+   ..
T Consensus       204 ~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg---~~  280 (530)
T 3ufb_A          204 PVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG---LE  280 (530)
T ss_dssp             HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT---CS
T ss_pred             HHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC---Cc
Confidence            44555555443 347799999999999988865421              2459999999999998875533221   23


Q ss_pred             ceEEEecccCCccccC---CCceeEEEEcccccc
Q psy11730        342 KCKFYHGDWGSLSAVI---HSKFDIILTSETIYS  372 (496)
Q Consensus       342 ~v~~~~~d~~~~~~~~---~~~fD~Ii~~~~l~~  372 (496)
                      ...+..+|....+...   ...||+|++++|+.-
T Consensus       281 ~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~  314 (530)
T 3ufb_A          281 YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGG  314 (530)
T ss_dssp             CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSC
T ss_pred             cccccccccccCchhhhcccccceEEEecCCCCc
Confidence            3455666654432211   247999999999953

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.40  E-value=0.0055  Score=62.00  Aligned_cols=83  Identities=13%  Similarity=0.127  Sum_probs=54.9

Q ss_pred             CCeEEEecCcCCHHHHHHHHc-----------------cC-CeEEEEeCC-----------HHHHHHhcCcccccccCCC
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMN-----------------GA-AHVSFQDYN-----------QEVIESLTLPNILMNTDNL  340 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~-----------------~~-~~v~giD~s-----------~~~i~~a~~~~~~~~~~~~  340 (496)
                      .-+|+|+|||+|.+++.+...                 .+ -+|+..|+.           +.+.+.+++..     +..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~-----g~~  127 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN-----GRK  127 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT-----CCC
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc-----cCC
Confidence            358999999999999988764                 12 467888877           55444332111     111


Q ss_pred             CceEEEecccCCcc--ccCCCceeEEEEccccccccchH
Q psy11730        341 EKCKFYHGDWGSLS--AVIHSKFDIILTSETIYSVANYN  377 (496)
Q Consensus       341 ~~v~~~~~d~~~~~--~~~~~~fD~Ii~~~~l~~~~~~~  377 (496)
                      .+..|+.+...++-  ..+.++||+|+|+.++|++.+.+
T Consensus       128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p  166 (384)
T 2efj_A          128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVP  166 (384)
T ss_dssp             TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSC
T ss_pred             CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCc
Confidence            23456666555531  22378999999999999997665

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.26  E-value=0.0044  Score=62.11  Aligned_cols=75  Identities=17%  Similarity=0.101  Sum_probs=57.3

Q ss_pred             chHHHHHHHHhCCCCC-------CCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEE
Q psy11730        274 CTFDLLNFIKDNVAVD-------KLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKF  345 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~~-------~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~  345 (496)
                      ....+++.|.+...+.       +..|||||.|.|.++..|+..+ +++|+++|+++.++...+...      ...++++
T Consensus        36 ~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~------~~~~l~i  109 (353)
T 1i4w_A           36 WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF------EGSPLQI  109 (353)
T ss_dssp             CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT------TTSSCEE
T ss_pred             CCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc------cCCCEEE
Confidence            3445556665554432       4789999999999999999864 578999999999998876543      1368999


Q ss_pred             EecccCCcc
Q psy11730        346 YHGDWGSLS  354 (496)
Q Consensus       346 ~~~d~~~~~  354 (496)
                      +.+|+.++.
T Consensus       110 i~~D~l~~~  118 (353)
T 1i4w_A          110 LKRDPYDWS  118 (353)
T ss_dssp             ECSCTTCHH
T ss_pred             EECCccchh
Confidence            999986653

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.20  E-value=0.0055  Score=61.56  Aligned_cols=128  Identities=14%  Similarity=0.061  Sum_probs=87.5

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCccccccc---CCCCceEEEecccCCccccCCCceeE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNT---DNLEKCKFYHGDWGSLSAVIHSKFDI  363 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~fD~  363 (496)
                      .+|.+|||++||.|.=+..+++.+. ..|+++|+++.-+..++++......   ....++.+...|...+.....+.||.
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~  226 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR  226 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence            3588999999999999999998776 5899999999988877655433221   13357888888887766544678999


Q ss_pred             EEEccccccc------cc--------hHh----------Hhhe-e-eecCCCCCcccEEEeeccCCcccccccchhhHhc
Q psy11730        364 ILTSETIYSV------AN--------YNK----------LLTV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIY  417 (496)
Q Consensus       364 Ii~~~~l~~~------~~--------~~~----------~~~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (496)
                      |++..+..-.      .+        .+.          ++.. + .+.|+|.   ++|..-.....+....+.+|...+
T Consensus       227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~---LVYsTCSl~~~ENE~vV~~~L~~~  303 (359)
T 4fzv_A          227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGH---VVYSTCSLSHLQNEYVVQGAIELL  303 (359)
T ss_dssp             EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEE---EEEEESCCCTTTTHHHHHHHHHHH
T ss_pred             EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcE---EEEEeCCCchhhCHHHHHHHHHhC
Confidence            9986554321      11        111          1111 1 5567664   677776666667777888776544


Q ss_pred             C
Q psy11730        418 P  418 (496)
Q Consensus       418 ~  418 (496)
                      +
T Consensus       304 ~  304 (359)
T 4fzv_A          304 A  304 (359)
T ss_dssp             H
T ss_pred             C
Confidence            3

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.02  E-value=0.015  Score=54.96  Aligned_cols=90  Identities=17%  Similarity=0.036  Sum_probs=55.7

Q ss_pred             CceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCC-Cce-
Q psy11730        267 GGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNL-EKC-  343 (496)
Q Consensus       267 ~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~-~~v-  343 (496)
                      ++|+ ..+++.|.+.-.+.+--++.+||||||+-|.++..+++.. ...|.|.++.... .. ...      ... .++ 
T Consensus        52 g~yR-SRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~-~P~------~~~~~Gv~  122 (269)
T 2px2_A           52 GHPV-SRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE-EPM------LMQSYGWN  122 (269)
T ss_dssp             SCCS-STHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC-CCC------CCCSTTGG
T ss_pred             CCcc-cHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc-CCC------cccCCCce
Confidence            4454 6677888888888633448899999999999999987751 2334444443321 00 000      001 233 


Q ss_pred             --EEEec-ccCCccccCCCceeEEEEcc
Q psy11730        344 --KFYHG-DWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       344 --~~~~~-d~~~~~~~~~~~fD~Ii~~~  368 (496)
                        .|..+ |+.++.   ...+|+|+|..
T Consensus       123 ~i~~~~G~Df~~~~---~~~~DvVLSDM  147 (269)
T 2px2_A          123 IVTMKSGVDVFYKP---SEISDTLLCDI  147 (269)
T ss_dssp             GEEEECSCCGGGSC---CCCCSEEEECC
T ss_pred             EEEeeccCCccCCC---CCCCCEEEeCC
Confidence              44446 887643   45899999954

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.94  E-value=0.0092  Score=59.04  Aligned_cols=74  Identities=20%  Similarity=0.245  Sum_probs=60.8

Q ss_pred             eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccc
Q psy11730        292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~  371 (496)
                      +||||.||.|.+++-+-+.|...|.++|+++.+++..+.+.         .-.++.+|+.++....-...|+|+..++..
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~---------~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ   72 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPPSQ   72 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC---------CSEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC---------CCCcccCChhhCCHhhCCcccEEEecCCCC
Confidence            69999999999999998999988999999999988766543         135678898887654346799999999888


Q ss_pred             ccc
Q psy11730        372 SVA  374 (496)
Q Consensus       372 ~~~  374 (496)
                      .++
T Consensus        73 ~fS   75 (331)
T 3ubt_Y           73 SWS   75 (331)
T ss_dssp             GTE
T ss_pred             CcC
Confidence            774

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.78  E-value=0.012  Score=59.34  Aligned_cols=88  Identities=14%  Similarity=0.122  Sum_probs=51.4

Q ss_pred             CCeEEEecCcCCHHHHHHHH--------cc-------C-CeEEEEeCCHHHHHHhcCccccc---------ccCCCCceE
Q psy11730        290 KLSVLDVGCGAGLLGLYTLM--------NG-------A-AHVSFQDYNQEVIESLTLPNILM---------NTDNLEKCK  344 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~--------~~-------~-~~v~giD~s~~~i~~a~~~~~~~---------~~~~~~~v~  344 (496)
                      .-+|+|+|||+|.+++.++.        ..       + -+|+..|+........=+.....         ......+-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            45899999999999998732        11       2 56888887665532211110000         000011223


Q ss_pred             EEecccCC---ccccCCCceeEEEEccccccccchHh
Q psy11730        345 FYHGDWGS---LSAVIHSKFDIILTSETIYSVANYNK  378 (496)
Q Consensus       345 ~~~~d~~~---~~~~~~~~fD~Ii~~~~l~~~~~~~~  378 (496)
                      |+.+...+   -.+ ++++||+|+|+.++|++++.+.
T Consensus       133 f~~gvpgSFy~rlf-P~~S~d~v~Ss~aLHWls~~p~  168 (374)
T 3b5i_A          133 FVAGVPGSFYRRLF-PARTIDFFHSAFSLHWLSQVPE  168 (374)
T ss_dssp             EEEEEESCTTSCCS-CTTCEEEEEEESCTTBCSSCCG
T ss_pred             EEEecChhhhcccC-CCcceEEEEecceeeeeccCch
Confidence            44443333   222 3789999999999999975543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.53  E-value=0.015  Score=58.40  Aligned_cols=80  Identities=16%  Similarity=0.069  Sum_probs=61.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccC-----CCCceEEEecccCCcccc---CCCc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD-----NLEKCKFYHGDWGSLSAV---IHSK  360 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~-----~~~~v~~~~~d~~~~~~~---~~~~  360 (496)
                      ++++||=||-|.|.....+++....+|+.+|+++++++.+++.....+..     ..++++++.+|.-+....   ..+.
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            46899999999999999998887789999999999999998764332211     124688999997655421   1468


Q ss_pred             eeEEEEcc
Q psy11730        361 FDIILTSE  368 (496)
Q Consensus       361 fD~Ii~~~  368 (496)
                      ||+|+...
T Consensus       285 yDvIIvDl  292 (381)
T 3c6k_A          285 FDYVINDL  292 (381)
T ss_dssp             EEEEEEEC
T ss_pred             eeEEEECC
Confidence            99999863

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=95.25  E-value=0.0077  Score=60.42  Aligned_cols=84  Identities=17%  Similarity=0.296  Sum_probs=57.5

Q ss_pred             CeEEEecCcCCHHHHHHHHc----------------cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        291 LSVLDVGCGAGLLGLYTLMN----------------GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~----------------~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      -+|+|+||++|..++.+...                .+ -+|+..|+.......+-+......  ...+..|+.+...++
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~--~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--DVDGVCFINGVPGSF  130 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--SCTTCEEEEEEESCS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc--ccCCCEEEEecchhh
Confidence            47999999999998876543                12 578999988888776655432111  001345566554443


Q ss_pred             ---cccCCCceeEEEEccccccccchH
Q psy11730        354 ---SAVIHSKFDIILTSETIYSVANYN  377 (496)
Q Consensus       354 ---~~~~~~~fD~Ii~~~~l~~~~~~~  377 (496)
                         .+ +.+++|+|+|+.++|++...+
T Consensus       131 y~rlf-p~~S~d~v~Ss~aLHWls~~p  156 (359)
T 1m6e_X          131 YGRLF-PRNTLHFIHSSYSLMWLSQVP  156 (359)
T ss_dssp             SSCCS-CTTCBSCEEEESCTTBCSSCC
T ss_pred             hhccC-CCCceEEEEehhhhhhcccCc
Confidence               33 378999999999999997644

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=94.95  E-value=0.029  Score=54.76  Aligned_cols=78  Identities=15%  Similarity=0.105  Sum_probs=60.2

Q ss_pred             CCeEEEecCcCCHHHHHHHHccCCe--EEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC---CCceeEE
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGAAH--VSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI---HSKFDII  364 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~~~--v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~fD~I  364 (496)
                      +-+|+||.||.|.+++.+.+.|...  |.++|+++.+++..+.+.        +...++.+|+.++....   .+.+|+|
T Consensus        16 ~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~--------~~~~~~~~DI~~i~~~~i~~~~~~Dll   87 (295)
T 2qrv_A           16 PIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH--------QGKIMYVGDVRSVTQKHIQEWGPFDLV   87 (295)
T ss_dssp             CEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT--------TTCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred             CCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC--------CCCceeCCChHHccHHHhcccCCcCEE
Confidence            4589999999999999998898866  799999999987655432        23456788888765321   2469999


Q ss_pred             EEccccccccc
Q psy11730        365 LTSETIYSVAN  375 (496)
Q Consensus       365 i~~~~l~~~~~  375 (496)
                      +..++...++.
T Consensus        88 ~ggpPCQ~fS~   98 (295)
T 2qrv_A           88 IGGSPCNDLSI   98 (295)
T ss_dssp             EECCCCGGGBT
T ss_pred             EecCCCccccc
Confidence            99998888753

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.84  E-value=0.02  Score=56.84  Aligned_cols=75  Identities=16%  Similarity=0.123  Sum_probs=58.2

Q ss_pred             eEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--CCceeEEEEc
Q psy11730        292 SVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--HSKFDIILTS  367 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~Ii~~  367 (496)
                      +|+||.||.|.+++.+...|.  ..|.++|+++.+++..+.+.        +...++.+|+.++....  ...+|+|+..
T Consensus         5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~--------~~~~~~~~DI~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF--------PETNLLNRNIQQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred             EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC--------CCCceeccccccCCHHHhccCCCCEEEec
Confidence            799999999999999888886  66889999999988766543        23345778887765321  2369999999


Q ss_pred             ccccccc
Q psy11730        368 ETIYSVA  374 (496)
Q Consensus       368 ~~l~~~~  374 (496)
                      ++...++
T Consensus        77 pPCQ~fS   83 (333)
T 4h0n_A           77 PPCQPFT   83 (333)
T ss_dssp             CCCCCSE
T ss_pred             CCCcchh
Confidence            8888774

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*

Probab=94.45  E-value=0.075  Score=54.70  Aligned_cols=42  Identities=24%  Similarity=0.249  Sum_probs=36.9

Q ss_pred             CCCchhhhccCCceeeeCCcceEEEEeeeeeEEEeecccCCC
Q psy11730        428 EWKPLELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNFCSHT  469 (496)
Q Consensus       428 ~~~p~e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~~~~~  469 (496)
                      +...+.++|+|||.++++.|-+|.|.+.+-++.+..|+...+
T Consensus       309 gIPvyr~iQkPGdfVit~PgtyH~Vqs~Gf~~niaWNvap~t  350 (510)
T 4ask_A          309 NIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLT  350 (510)
T ss_dssp             TCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECBSS
T ss_pred             CCCeEEEEECCCCEEEECCCceEEEEecCeeeeeEEEecCCC
Confidence            445677899999999999999999999999888888887665

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.04  E-value=0.042  Score=54.44  Aligned_cols=74  Identities=12%  Similarity=-0.041  Sum_probs=56.5

Q ss_pred             CeEEEecCcCCHHHHHHHHccC--CeE-EEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--CCceeEEE
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGA--AHV-SFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--HSKFDIIL  365 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~--~~v-~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~Ii  365 (496)
                      -+|+||.||.|.+++.+.+.|.  ..| .++|+++.+++..+.+..        .. ++.+|+.++....  ...+|+|+
T Consensus        11 ~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~--------~~-~~~~DI~~~~~~~i~~~~~Dil~   81 (327)
T 3qv2_A           11 VNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK--------EE-VQVKNLDSISIKQIESLNCNTWF   81 (327)
T ss_dssp             EEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC--------CC-CBCCCTTTCCHHHHHHTCCCEEE
T ss_pred             CEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC--------CC-cccCChhhcCHHHhccCCCCEEE
Confidence            3899999999999999988885  567 799999999987665431        11 4567777764321  12699999


Q ss_pred             Eccccccc
Q psy11730        366 TSETIYSV  373 (496)
Q Consensus       366 ~~~~l~~~  373 (496)
                      ..++...+
T Consensus        82 ggpPCQ~f   89 (327)
T 3qv2_A           82 MSPPCQPY   89 (327)
T ss_dssp             ECCCCTTC
T ss_pred             ecCCccCc
Confidence            99998877

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.72  E-value=0.072  Score=52.56  Aligned_cols=57  Identities=14%  Similarity=0.080  Sum_probs=46.5

Q ss_pred             hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcc
Q psy11730        275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN  332 (496)
Q Consensus       275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~  332 (496)
                      ...|++.+......+|..|||-.||+|..+.++.+.| .+.+|+|+++..++.++.+.
T Consensus       238 p~~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~  294 (323)
T 1boo_A          238 PAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRF  294 (323)
T ss_dssp             CTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHH
Confidence            3456666665555578899999999999999966665 68999999999999988875

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=93.64  E-value=0.048  Score=56.82  Aligned_cols=79  Identities=11%  Similarity=0.129  Sum_probs=59.2

Q ss_pred             CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc--------------
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV--------------  356 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~--------------  356 (496)
                      -+|+||.||.|.+++-+.+.|...|.++|+++.+++..+.+.     ...++..++.+|+.++...              
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~-----~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH-----YCDPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS-----CCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc-----ccCCCcceeccchhhhhhccccccchhhHHhhh
Confidence            489999999999999988888888999999999987765432     1123455677887765421              


Q ss_pred             --CCCceeEEEEcccccccc
Q psy11730        357 --IHSKFDIILTSETIYSVA  374 (496)
Q Consensus       357 --~~~~fD~Ii~~~~l~~~~  374 (496)
                        ....+|+|+..++...++
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~FS  183 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQPFS  183 (482)
T ss_dssp             HHHSCCCSEEEEECCCCCC-
T ss_pred             hhcCCCCCEEEecCCCcchh
Confidence              124689999999888775

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=93.12  E-value=0.083  Score=51.09  Aligned_cols=80  Identities=13%  Similarity=-0.017  Sum_probs=54.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc------CCeEEEEeCCHH--------------------------HHHHhcCcccccc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG------AAHVSFQDYNQE--------------------------VIESLTLPNILMN  336 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~------~~~v~giD~s~~--------------------------~i~~a~~~~~~~~  336 (496)
                      ..+.|||+||..|..++.++...      ..+|+++|..+.                          .++.++++...  
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~--  183 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN--  183 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH--
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH--
Confidence            46799999999999999987531      468999996432                          12333322211  


Q ss_pred             cCC-CCceEEEecccCCccccC-CCceeEEEEcccc
Q psy11730        337 TDN-LEKCKFYHGDWGSLSAVI-HSKFDIILTSETI  370 (496)
Q Consensus       337 ~~~-~~~v~~~~~d~~~~~~~~-~~~fD~Ii~~~~l  370 (496)
                      .+. ..+++++.+++.+..... .++||+|+...-.
T Consensus       184 ~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~  219 (282)
T 2wk1_A          184 YDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL  219 (282)
T ss_dssp             TTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS
T ss_pred             cCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc
Confidence            122 378999999987654332 4789999997644

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=92.85  E-value=0.12  Score=52.63  Aligned_cols=63  Identities=13%  Similarity=0.086  Sum_probs=47.7

Q ss_pred             CCCeEEEecCcCCHHHHHHH-HccC--CeEEEEeCCHHHHHHhcCccccc-ccCCC-CceEEEecccCC
Q psy11730        289 DKLSVLDVGCGAGLLGLYTL-MNGA--AHVSFQDYNQEVIESLTLPNILM-NTDNL-EKCKFYHGDWGS  352 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la-~~~~--~~v~giD~s~~~i~~a~~~~~~~-~~~~~-~~v~~~~~d~~~  352 (496)
                      ++..|+||||+.|.+++.++ +.+.  ++|+++|+++...+.++++.... | ... .+++++..-+.+
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N-~~~~~~v~~~~~al~~  293 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD-TNFASRITVHGCGAGE  293 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT-STTGGGEEEECSEECS
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhc-cCCCCCEEEEEeEEEC
Confidence            57899999999999999987 4443  79999999999999888765431 1 123 677777765543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=92.03  E-value=0.65  Score=44.74  Aligned_cols=75  Identities=19%  Similarity=0.226  Sum_probs=48.6

Q ss_pred             HHHHHHHHhC-CC-CCCCeEEEecCc------CCHHHHHHHHccCC--eEEEEeCCHHHHHHhcCcccccccCCCCceEE
Q psy11730        276 FDLLNFIKDN-VA-VDKLSVLDVGCG------AGLLGLYTLMNGAA--HVSFQDYNQEVIESLTLPNILMNTDNLEKCKF  345 (496)
Q Consensus       276 ~~l~~~l~~~-~~-~~~~~VLDlGcG------tG~~~~~la~~~~~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~  345 (496)
                      ..|.++|... .. ..|.+|||||+|      -|.  ..+.+.++.  .|+++|+.+-..              ..+ .+
T Consensus        94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s--------------da~-~~  156 (344)
T 3r24_A           94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS--------------DAD-ST  156 (344)
T ss_dssp             HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC--------------SSS-EE
T ss_pred             HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc--------------CCC-eE
Confidence            3567777442 23 348999999973      344  344555663  899999886221              122 44


Q ss_pred             EecccCCccccCCCceeEEEEccc
Q psy11730        346 YHGDWGSLSAVIHSKFDIILTSET  369 (496)
Q Consensus       346 ~~~d~~~~~~~~~~~fD~Ii~~~~  369 (496)
                      +++|..++..  .+.||+|+|..+
T Consensus       157 IqGD~~~~~~--~~k~DLVISDMA  178 (344)
T 3r24_A          157 LIGDCATVHT--ANKWDLIISDMY  178 (344)
T ss_dssp             EESCGGGEEE--SSCEEEEEECCC
T ss_pred             EEcccccccc--CCCCCEEEecCC
Confidence            8899765443  578999999544

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=91.81  E-value=0.13  Score=50.73  Aligned_cols=58  Identities=14%  Similarity=0.100  Sum_probs=47.2

Q ss_pred             chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCH---HHHHHhcCcc
Q psy11730        274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQ---EVIESLTLPN  332 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~---~~i~~a~~~~  332 (496)
                      -...|++.+......+|..|||-.||+|..+.++.+.| .+.+|+|+++   ..++.++++.
T Consensus       227 kp~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl  287 (319)
T 1eg2_A          227 KPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFL  287 (319)
T ss_dssp             CCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHH
Confidence            44566666666555678899999999999999976665 6799999999   9998887765

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=90.19  E-value=0.28  Score=55.47  Aligned_cols=76  Identities=16%  Similarity=0.132  Sum_probs=55.7

Q ss_pred             CeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc---------------
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS---------------  354 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~---------------  354 (496)
                      -+++||.||.|.+++-+.+.|. ..|.++|+++.+++..+.+.        ++..++.+|+.++.               
T Consensus       541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~--------p~~~~~~~DI~~l~~~~~~~di~~~~~~~  612 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN--------PGSTVFTEDCNILLKLVMAGETTNSRGQR  612 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC--------TTSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred             CeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC--------CCCccccccHHHHhhhccchhhhhhhhhh
Confidence            4899999999999999988897 67889999999988765443        23445555543220               


Q ss_pred             ccCCCceeEEEEcccccccc
Q psy11730        355 AVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      ....+.+|+|+..++...++
T Consensus       613 lp~~~~vDll~GGpPCQ~FS  632 (1002)
T 3swr_A          613 LPQKGDVEMLCGGPPCQGFS  632 (1002)
T ss_dssp             CCCTTTCSEEEECCCCTTCC
T ss_pred             cccCCCeeEEEEcCCCcchh
Confidence            11135799999988877764

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=86.38  E-value=0.66  Score=51.32  Aligned_cols=43  Identities=19%  Similarity=0.184  Sum_probs=35.8

Q ss_pred             CCeEEEecCcCCHHHHHHHHcc------CCeEEEEeCCHHHHHHhcCcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNG------AAHVSFQDYNQEVIESLTLPN  332 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~------~~~v~giD~s~~~i~~a~~~~  332 (496)
                      ..+||||.||.|.+++-+.+.|      ...+.++|+++.+++.-+.+.
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            3489999999999999987776      467899999999998766553

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=83.87  E-value=1.2  Score=51.84  Aligned_cols=77  Identities=17%  Similarity=0.147  Sum_probs=55.2

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc--------------
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS--------------  354 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~--------------  354 (496)
                      .-+++||.||.|.+++-+.+.|. ..|.++|+++.+++..+.+.        ++..++.+|+.++.              
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~--------p~~~~~~~DI~~l~~~~~~gdi~~~~~~  922 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN--------PGTTVFTEDCNVLLKLVMAGEVTNSLGQ  922 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC--------TTSEEECSCHHHHHHHHTTTCSBCSSCC
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC--------CCCcEeeccHHHHhHhhhccchhhhhhh
Confidence            44899999999999999988887 67899999999988765442        23344444433210              


Q ss_pred             -ccCCCceeEEEEcccccccc
Q psy11730        355 -AVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       355 -~~~~~~fD~Ii~~~~l~~~~  374 (496)
                       ....+.+|+|+..++...++
T Consensus       923 ~lp~~~~vDvl~GGpPCQ~FS  943 (1330)
T 3av4_A          923 RLPQKGDVEMLCGGPPCQGFS  943 (1330)
T ss_dssp             BCCCTTTCSEEEECCCCTTTC
T ss_pred             hccccCccceEEecCCCcccc
Confidence             01124689999988887774

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=82.33  E-value=1.2  Score=45.06  Aligned_cols=41  Identities=12%  Similarity=0.011  Sum_probs=34.2

Q ss_pred             CeEEEecCcCCHHHHHHHHccC--Ce----EEEEeCCHHHHHHhcCc
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGA--AH----VSFQDYNQEVIESLTLP  331 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~--~~----v~giD~s~~~i~~a~~~  331 (496)
                      -+||||.||.|...+.+.+.|.  ..    |.++|+++.++..-+.+
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n   57 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAI   57 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHH
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHH
Confidence            4899999999999999988873  44    88999999988765544

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=82.17  E-value=0.66  Score=57.88  Aligned_cols=95  Identities=14%  Similarity=0.021  Sum_probs=45.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc------CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCcee
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG------AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFD  362 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~------~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD  362 (496)
                      ...+|||||.|+|..+..+....      ...++.+|+|+.+.+.++++....      .+..-.-|..+........||
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~yd 1313 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKAD 1313 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----CC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCcee
Confidence            35699999999998766554321      247899999998888777664211      111111122111000145799


Q ss_pred             EEEEccccccccchHhHhhee--eecCCC
Q psy11730        363 IILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       363 ~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +|++..++|-.++....+...  .|.|++
T Consensus      1314 lvia~~vl~~t~~~~~~l~~~~~lL~p~G 1342 (2512)
T 2vz8_A         1314 LLVCNCALATLGDPAVAVGNMAATLKEGG 1342 (2512)
T ss_dssp             EEEEECC--------------------CC
T ss_pred             EEEEcccccccccHHHHHHHHHHhcCCCc
Confidence            999999998887777766652  455554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	496
d1h2ka_	335	b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibit	4e-13
d1h2ka_	335	b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibit	3e-05
d1vrba1	319	b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla	4e-08
d1vrba1	319	b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla	3e-07
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	6e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	8e-04

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 4e-13
 Identities = 21/171 (12%), Positives = 45/171 (26%), Gaps = 35/171 (20%)

Query: 47  KFKIVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQ 106
            +      + R+   D       E+  +  +PVV+      + A  KW LE L +   N 
Sbjct: 20  SYSFPTRPIPRLSQSD----PRAEELIENEEPVVLTDTNLVYPA-LKWDLEYLQENIGNG 74

Query: 107 KFKCGEDNHGYSKLGKKYRNQKFKCGEDNHGYSH-------------------------- 140
            F     +        + +   F+  +                                 
Sbjct: 75  DFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQQ 134

Query: 141 ----PRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGPARSGTGIH 187
                  +K++ D+    +   +  Q      +      ++G   + T  H
Sbjct: 135 TLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAH 185

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 382 VWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
                P                +Q     +      P  +           E V GPG+ 
Sbjct: 202 CILFPPDQFECLYPYPVHHPCDRQ-----SQVDFDNPDYERFPNFQNVVGYETVVGPGDV 256

Query: 442 VFVPGGWWHVVLNLDT-TVAVTQNF 465
           +++P  WWH + +L    + +T NF
Sbjct: 257 LYIPMYWWHHIESLLNGGITITVNF 281

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

 Score = 52.6 bits (125), Expect = 4e-08
 Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 7/133 (5%)

Query: 64  SPQEFIEKYEKPNKPVVIKGVTENWNATYKWT----LEKLGKKYRNQKFKCGEDNHGYSK 119
           +  EF+E+Y  P KP+V +G  E + +   +     LE +   Y N     G+     S+
Sbjct: 10  TMSEFLEEYW-PVKPLVARGEVERFTSIPGFEKVRTLENVLAIYNNPVMVVGDAVIEESE 68

Query: 120 LGKKYRNQKFKCGED--NHGYSHPRRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVM 177
                         +    G +       L   +V  + +    +               
Sbjct: 69  GITDRFLVSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGTSSKAIVYA 128

Query: 178 GPARSGTGIHIDP 190
                G   H D 
Sbjct: 129 AKNGGGFKAHFDA 141

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 383 WCLFPTHTPKDLLKVTSAEGGKQRDEAIT-WFSIIYPRTQLPSWPTEWKPLELVQGPGET 441
           W L       + ++           + +  ++    P+  LP          +   PG  
Sbjct: 155 WKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDA------EIVNLTPGTM 208

Query: 442 VFVPGGWWHVVLNLDTTVAVTQNFCSHTNF 471
           +++P G WH   +   T+A+   F      
Sbjct: 209 LYLPRGLWHSTKSDQATLALNITFGQPAWL 238

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 6e-04
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 280 NFIKDNVAVDK-LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
           N +  N  + K   VLDVG G G+L ++    GA  V   + +     +     I+    
Sbjct: 23  NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA---VKIVKANK 79

Query: 339 NLEKCKFYHGDWGSLSAVIHSKFDI 363
                    G    +   +     I
Sbjct: 80  LDHVVTIIKGKVEEVELPVEKVDII 104

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 280 NFIKDNVAVDK-LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD 338
           +FI  N  + K   VLDVGCG G+L ++    GA  V   D ++ + +++   +I+    
Sbjct: 25  DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAM---DIIRLNK 81

Query: 339 NLEKCKFYHGDWGSLSAVIHSKFDII 364
             +      G    +   +     II
Sbjct: 82  LEDTITLIKGKIEEVHLPVEKVDVII 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	496
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	99.93
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	99.8
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.56
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.54
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.5
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.5
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.43
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.42
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.42
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.39
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.39
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.39
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.38
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.37
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.37
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.34
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.33
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.33
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.33
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.31
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.31
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.3
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.29
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.27
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.26
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.26
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.22
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.2
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.2
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.19
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.18
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.16
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.14
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.13
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.13
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.11
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.08
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.01
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.0
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.99
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.93
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.92
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.92
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.89
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.87
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.87
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.84
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.84
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.83
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.82
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.81
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.79
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.76
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.76
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.75
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.71
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.69
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.67
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.65
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.62
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.62
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.6
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.59
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.59
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.54
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.5
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.48
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.47
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.45
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.42
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.29
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.07
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.06
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.05
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.95
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.94
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.84
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.77
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.77
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.74
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.73
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.68
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.65
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.43
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.42
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.36
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.2
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.17
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.13
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.11
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	96.93
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.91
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.85
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.77
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.76
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.76
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.33
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.3
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.84
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.55
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.5
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.43
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	95.28
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.28
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	94.98
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	94.97
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.93
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.15
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.36
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	90.93
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.2
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	86.8
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	85.98
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	82.47
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	81.33

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6e-28  Score=242.00  Aligned_cols=141  Identities=16%  Similarity=0.105  Sum_probs=100.1

Q ss_pred             cCCCceeeecCCCCCHHHHHHHhcCCCCcEEEecCCCCCcCCCCCCHHHHHhhcCCeeEEeeecCCC-------------
Q psy11730         50 IVKENVERIHVKDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTLEKLGKKYRNQKFKCGEDNHG-------------  116 (496)
Q Consensus        50 ~~~~~I~Ri~~~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~~L~~~~g~~~v~v~~~~~~-------------  116 (496)
                      ....+|+|++..++    |.++|+++++||||+|++.+|||+ +||++||+++||+..|+|.....+             
T Consensus        23 ~~~~~vpr~~~~~~----~~e~y~~~~~PvVi~g~~~~Wpa~-kWt~dyL~~~~Gd~~V~v~~~~~~~~~~~~~~~~~~~   97 (335)
T d1h2ka_          23 FPTRPIPRLSQSDP----RAEELIENEEPVVLTDTNLVYPAL-KWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANF   97 (335)
T ss_dssp             SCEEECCEECTTCH----HHHHHHHTTCCEEESCCCTTGGGG-GCCHHHHHHHSCSCCEEEEEESSSBCCCCCGGGGGGG
T ss_pred             CCCcccCccCCCCc----CHHHHhcCCCCEEEeCCCCCCCcc-cCCHHHHHHhhCCceEEEEEecCcccccccccccccc
Confidence            35568999865433    567888899999999999999998 699999999999999999743321             


Q ss_pred             --------ccccCHHHHHHHhhcCC---CC-CCCCcc-----ccccccccCCCCCCCchhhhcccCCCCCCCccceEecC
Q psy11730        117 --------YSKLGKKYRNQKFKCGE---DN-HGYSHP-----RRKKLLDDYEVPIYFQDDLFQYAGEDKRPPYRWFVMGP  179 (496)
Q Consensus       117 --------~~~m~~~~f~~~~~~~~---~~-p~y~~~-----~~~~L~~d~~~P~~f~~d~~~~~~~~~~p~~~w~~iG~  179 (496)
                              +..|+|++|++++.+..   .+ ++|+..     ..+.+..|+..|.++..+.........+....++|||+
T Consensus        98 ~~~~~~~~~~~~~~~ef~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lwiG~  177 (335)
T d1h2ka_          98 QNFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGM  177 (335)
T ss_dssp             TTCCCSEEEEEECHHHHHHHHHHHHHTTCCCEEEEEEECCTTSCHHHHHHHHTSCHHHHHHHHHHHTCCCEEECEEEEEC
T ss_pred             cccccccchhcccHHHHHHHHHhccccCCCcceEhhhccccccChhhhcccccCcccccchhhccccccCCcceEEEEcC
Confidence                    11799999999886432   22 344432     23556667766654322211112222355667899999


Q ss_pred             CCCccccccCCCCCCC
Q psy11730        180 ARSGTGIHIDPLGTNP  195 (496)
Q Consensus       180 ~gs~T~lH~D~~~~~~  195 (496)
                      +||+|++|+|++++..
T Consensus       178 ~gs~t~~H~D~~~~~~  193 (335)
T d1h2ka_         178 EGNVTPAHYDEQQNFF  193 (335)
T ss_dssp             TTCEEEEECCSEEEEE
T ss_pred             CCCCCccccccccceE
Confidence            9999999999986555

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=2.6e-20  Score=183.87  Aligned_cols=124  Identities=15%  Similarity=0.156  Sum_probs=73.3

Q ss_pred             CCCCHHHHHHHhcCCCCcEEEecCCCCCcCCCCCCH----HHHHhhcCCeeEEeeecCCC-----c--cccCHHHHHHHh
Q psy11730         61 KDYSPQEFIEKYEKPNKPVVIKGVTENWNATYKWTL----EKLGKKYRNQKFKCGEDNHG-----Y--SKLGKKYRNQKF  129 (496)
Q Consensus        61 ~~ls~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~----~~L~~~~g~~~v~v~~~~~~-----~--~~m~~~~f~~~~  129 (496)
                      +.+|+++|+++|.. ++||||+|++.+|+|+.+|+.    +.+...++...+........     .  ..+...++.+++
T Consensus         7 spis~eeF~~~y~~-kkPvvir~~~~~~~a~~~w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (319)
T d1vrba1           7 SPVTMSEFLEEYWP-VKPLVARGEVERFTSIPGFEKVRTLENVLAIYNNPVMVVGDAVIEESEGITDRFLVSPAEALEWY   85 (319)
T ss_dssp             TTSCHHHHHHHTTT-TSCEEECCCGGGGGGSTTCGGGSSHHHHHHHCCSCEEEC-------------CEEECHHHHHHHH
T ss_pred             CCCCHHHHHHHcCC-CCCEEEcCCcccCccccCCccHHHHHHccCccccceEEccCCceeccCCcccccccchHHHHHHH
Confidence            67999999999985 699999999999999999985    33334445544444322111     1  155666777766


Q ss_pred             hcCCCC----CCCCccccccccccCCCCCCCchhhhcccCC-CCCCCccceEecCCCCccccccCCCCCCC
Q psy11730        130 KCGEDN----HGYSHPRRKKLLDDYEVPIYFQDDLFQYAGE-DKRPPYRWFVMGPARSGTGIHIDPLGTNP  195 (496)
Q Consensus       130 ~~~~~~----p~y~~~~~~~L~~d~~~P~~f~~d~~~~~~~-~~~p~~~w~~iG~~gs~T~lH~D~~~~~~  195 (496)
                      .....-    +.........+.+++..          ..+. ..+....++|+|++|+++++|+|++.+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~H~D~~d~f~  146 (319)
T d1vrba1          86 EKGAALEFDFTDLFIPQVRRWIEKLKA----------ELRLPAGTSSKAIVYAAKNGGGFKAHFDAYTNLI  146 (319)
T ss_dssp             HTTCCEEECCGGGTCTHHHHHHHHHHH----------HTTCCTTCCEEEEEEEECSSCCCCSEECSSEEEE
T ss_pred             hcCCEEEEechhhcChHHHHHHhhhHH----------hhcCcccccceeEEEecCCCCCCccccCCCceeE
Confidence            543321    00001111122211111          1110 12344567889999999999999987665

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.56  E-value=1.7e-15  Score=142.44  Aligned_cols=107  Identities=21%  Similarity=0.195  Sum_probs=89.6

Q ss_pred             HHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        279 LNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       279 ~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      .+++.+..+++ |.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|++++...   ...++.++++|+++++.. 
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~---~~~~~~~~~~d~~~~~~~-   79 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEK---GVENVRFQQGTAESLPFP-   79 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHH---TCCSEEEEECBTTBCCSC-
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccc---cccccccccccccccccc-
Confidence            44555555554 8899999999999999998876 58999999999999998776443   256899999999998764 


Q ss_pred             CCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        358 HSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +++||+|+|..+++|+++++.+++++  .|.|+|.
T Consensus        80 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~  114 (234)
T d1xxla_          80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGR  114 (234)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             ccccceeeeeceeecccCHHHHHHHHHHeeCCCcE
Confidence            78999999999999999999999873  7777763

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.54  E-value=4.1e-15  Score=139.08  Aligned_cols=98  Identities=14%  Similarity=0.099  Sum_probs=83.1

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++....   ...+++|+++|+++++.. +++||+|+|.
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~---~~~~i~~~~~d~~~l~~~-~~~fD~v~~~   88 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGN---GHQQVEYVQGDAEQMPFT-DERFHIVTCR   88 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCC-CCCSC-TTCEEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhccccc---cccccccccccccccccc-cccccccccc
Confidence            347899999999999999998887 58999999999999987765332   357899999999998754 7899999999


Q ss_pred             cccccccchHhHhhee--eecCCCC
Q psy11730        368 ETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      .+++|+++++.++++.  +|.|+|.
T Consensus        89 ~~l~~~~d~~~~l~~~~r~LkpgG~  113 (231)
T d1vl5a_          89 IAAHHFPNPASFVSEAYRVLKKGGQ  113 (231)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             ccccccCCHHHHHHHHHHhcCCCcE
Confidence            9999999999999873  7777763

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.8e-14  Score=136.46  Aligned_cols=114  Identities=14%  Similarity=0.113  Sum_probs=93.2

Q ss_pred             cchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        273 ECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       273 ~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      +.....++.|.+...+. |++|||||||+|.++..+++....+|+|||+|+.|++.|+++....+  ...+++|..+|+.
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~g--l~~~v~~~~~d~~   93 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAA   93 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCCT
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhh--ccccchhhhhHHh
Confidence            44455666676666554 78999999999999999988766799999999999999887654332  4567999999999


Q ss_pred             CccccCCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        352 SLSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       352 ~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      ++..  +++||+|+|..+++|++++..+++++  .|.|+|.
T Consensus        94 ~~~~--~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~  132 (245)
T d1nkva_          94 GYVA--NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGI  132 (245)
T ss_dssp             TCCC--SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEE
T ss_pred             hccc--cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcE
Confidence            8743  78999999999999999999999873  7777763

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.50  E-value=2e-14  Score=139.06  Aligned_cols=111  Identities=12%  Similarity=0.090  Sum_probs=92.6

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+++.|....++ ++.+|||||||+|.++..|++....+|+|+|+|+.|++.|+++....+  ...+++|+.+|+++++.
T Consensus        54 ~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~g--l~~~v~~~~~d~~~l~~  131 (282)
T d2o57a1          54 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPC  131 (282)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTTSCSS
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccc--ccccccccccccccccc
Confidence            355666666665 488999999999999999998766789999999999999987764433  35689999999999876


Q ss_pred             cCCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        356 VIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      . +++||+|++..+++|++++..++++.  +|.|+|.
T Consensus       132 ~-~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~  167 (282)
T d2o57a1         132 E-DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGV  167 (282)
T ss_dssp             C-TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             c-ccccchhhccchhhhccCHHHHHHHHHHhcCCCcE
Confidence            5 68999999999999999999999873  7777764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=1.3e-13  Score=127.90  Aligned_cols=105  Identities=20%  Similarity=0.252  Sum_probs=83.1

Q ss_pred             HHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730        279 LNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH  358 (496)
Q Consensus       279 ~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  358 (496)
                      ...+.+.+. ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....    ..++.++.+|+++++.. +
T Consensus        28 ~~~~~~~l~-~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~----~~~~~~~~~d~~~l~~~-~  100 (226)
T d1ve3a1          28 EPLLMKYMK-KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFE-D  100 (226)
T ss_dssp             HHHHHHSCC-SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSC-T
T ss_pred             HHHHHHhcC-CCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccc----ccccccccccccccccc-C
Confidence            344444433 567999999999999999998764 7999999999999998765432    34678899999998765 6


Q ss_pred             CceeEEEEcccccccc--chHhHhhee--eecCCCC
Q psy11730        359 SKFDIILTSETIYSVA--NYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       359 ~~fD~Ii~~~~l~~~~--~~~~~~~~~--~l~p~~~  390 (496)
                      ++||+|+|..+++|++  +...+++++  .|.|+|.
T Consensus       101 ~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~  136 (226)
T d1ve3a1         101 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGK  136 (226)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEE
T ss_pred             cCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcE
Confidence            8999999999999986  666677763  6777763

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=2.3e-13  Score=131.79  Aligned_cols=113  Identities=12%  Similarity=0.144  Sum_probs=90.3

Q ss_pred             ecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      -++....++.+.+...++ |.+|||||||+|.+++.+|+..+.+|+||++|+++++.++++....+  ....+.+...|.
T Consensus        43 ~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~--l~~~v~~~~~d~  120 (291)
T d1kpia_          43 EEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGW  120 (291)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSC--CSSCEEEEECCG
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhc--cchhhhhhhhcc
Confidence            455566778888877765 88999999999999999998777899999999999999988765543  456778887776


Q ss_pred             CCccccCCCceeEEEEccccccccc---------hHhHhhe--eeecCCCC
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVAN---------YNKLLTV--WCLFPTHT  390 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~~---------~~~~~~~--~~l~p~~~  390 (496)
                      ...    +++||.|+|..+++|+.+         ++.+++.  ..|.|+|.
T Consensus       121 ~~~----~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~  167 (291)
T d1kpia_         121 EEF----DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGR  167 (291)
T ss_dssp             GGC----CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCE
T ss_pred             ccc----ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCc
Confidence            432    689999999999999965         5777876  36777664

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=2.6e-13  Score=130.93  Aligned_cols=113  Identities=13%  Similarity=0.190  Sum_probs=89.5

Q ss_pred             ecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .++.....+.+.+.+.++ |.+|||||||+|.++..+++....+|+|||+|+++++.|+++....+  ...++.+...|.
T Consensus        34 ~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~--l~~~~~~~~~d~  111 (280)
T d2fk8a1          34 EEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGW  111 (280)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCG
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhc--cccchhhhhhhh
Confidence            344455667777777665 78999999999999999998877899999999999999988764433  355677777776


Q ss_pred             CCccccCCCceeEEEEcccccccc--chHhHhhee--eecCCCC
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVA--NYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~--~~~~~~~~~--~l~p~~~  390 (496)
                      .++    .++||.|++..+++|+.  +.+.++++.  .|.|+|.
T Consensus       112 ~~~----~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~  151 (280)
T d2fk8a1         112 EDF----AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGR  151 (280)
T ss_dssp             GGC----CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCE
T ss_pred             hhh----ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCce
Confidence            654    57899999999999994  557888763  6777764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=1.6e-13  Score=128.86  Aligned_cols=91  Identities=22%  Similarity=0.308  Sum_probs=76.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|+++..         ..++.+++++++.. +++||+|+|.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~---------~~~~~~~~~~l~~~-~~~fD~ii~~  109 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV---------KNVVEAKAEDLPFP-SGAFEAVLAL  109 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC---------SCEEECCTTSCCSC-TTCEEEEEEC
T ss_pred             CCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc---------cccccccccccccc-cccccceeee
Confidence            3678999999999999999998865 79999999999999987542         13578899988764 6899999984


Q ss_pred             -cccccccchHhHhhee--eecCCC
Q psy11730        368 -ETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       368 -~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                       .+++|+++++.+++++  +|.|+|
T Consensus       110 ~~~~~~~~d~~~~l~~i~r~Lk~gG  134 (246)
T d2avna1         110 GDVLSYVENKDKAFSEIRRVLVPDG  134 (246)
T ss_dssp             SSHHHHCSCHHHHHHHHHHHEEEEE
T ss_pred             cchhhhhhhHHHHHHHHHhhcCcCc
Confidence             6899999999998873  677765

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.39  E-value=5e-13  Score=129.00  Aligned_cols=113  Identities=14%  Similarity=0.232  Sum_probs=93.5

Q ss_pred             ecchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .++...+.+.+.+...++ |.+|||||||+|.+++.+|+....+|+||++|+++++.++++....  +...++++..+|+
T Consensus        44 ~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~--g~~~~v~~~~~d~  121 (285)
T d1kpga_          44 QEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS--ENLRSKRVLLAGW  121 (285)
T ss_dssp             HHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC--CCCSCEEEEESCG
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhh--hhhhhhHHHHhhh
Confidence            455667788888887765 7899999999999999999887789999999999999998876443  4578999999998


Q ss_pred             CCccccCCCceeEEEEccccccc--cchHhHhhee--eecCCCC
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSV--ANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~--~~~~~~~~~~--~l~p~~~  390 (496)
                      .++    +++||.|+|..+++|+  .+.+.++++.  .|.|+|.
T Consensus       122 ~~~----~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~  161 (285)
T d1kpga_         122 EQF----DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGV  161 (285)
T ss_dssp             GGC----CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCE
T ss_pred             hcc----cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCc
Confidence            765    4789999999999999  5568888873  6666653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-13  Score=128.40  Aligned_cols=97  Identities=14%  Similarity=0.160  Sum_probs=80.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      .+.+|||||||+|.++..+++.++.+|+|||+|+.|++.|++++...+   ..+++|+++|+++++.. .++||+|++..
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~---~~~~~f~~~d~~~~~~~-~~~fD~I~~~~  135 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPE-PDSYDVIWIQW  135 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCC-SSCEEEEEEES
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccc---ccccccccccccccccc-ccccccccccc
Confidence            467999999999999999888888899999999999999988764433   46789999999998754 68999999999


Q ss_pred             ccccccchH--hHhhee--eecCCC
Q psy11730        369 TIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       369 ~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                      +++|+++.+  .+++..  .|.|++
T Consensus       136 ~l~h~~~~~~~~~l~~i~~~Lk~~G  160 (222)
T d2ex4a1         136 VIGHLTDQHLAEFLRRCKGSLRPNG  160 (222)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             ccccchhhhhhhHHHHHHHhcCCcc
Confidence            999997754  566652  566654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.38  E-value=3.1e-13  Score=127.64  Aligned_cols=104  Identities=24%  Similarity=0.308  Sum_probs=81.0

Q ss_pred             HHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCC
Q psy11730        279 LNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIH  358 (496)
Q Consensus       279 ~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  358 (496)
                      ...+......++++|||||||+|.+++.+++.|. +|+|||+|+.|++.|+++....+    .++++.++|+++++.  .
T Consensus        31 ~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~----~~i~~~~~d~~~l~~--~  103 (251)
T d1wzna1          31 EEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAF--K  103 (251)
T ss_dssp             HHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCC--C
T ss_pred             HHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccccccccccc----ccchheehhhhhccc--c
Confidence            3344444555678999999999999999999886 79999999999999998764432    379999999999876  5


Q ss_pred             CceeEEEEc-cccccc--cchHhHhhee--eecCCC
Q psy11730        359 SKFDIILTS-ETIYSV--ANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       359 ~~fD~Ii~~-~~l~~~--~~~~~~~~~~--~l~p~~  389 (496)
                      +.||+|+|. .+++|+  ++...+++++  +|.|+|
T Consensus       104 ~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG  139 (251)
T d1wzna1         104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG  139 (251)
T ss_dssp             SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCc
Confidence            789999996 567776  3455666653  667765

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.37  E-value=2.1e-13  Score=127.21  Aligned_cols=92  Identities=12%  Similarity=0.102  Sum_probs=78.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++++|||||||+|.++..+++.|. +|+|||+|++|++.|+++.       ..++.++.++++++..  +++||+|++.
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~--~~~fD~I~~~   88 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQL--PRRYDNIVLT   88 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCCC--SSCEEEEEEE
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccc-------cccccccccccccccc--cccccccccc
Confidence            4678999999999999999888774 7999999999999998653       3478999999988765  6899999999


Q ss_pred             cccccccchHhHhhee---eecCCC
Q psy11730        368 ETIYSVANYNKLLTVW---CLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~~~~~~~~---~l~p~~  389 (496)
                      .+++|++++..++++.   +|.|++
T Consensus        89 ~vleh~~d~~~~l~~i~~~~Lk~gG  113 (225)
T d2p7ia1          89 HVLEHIDDPVALLKRINDDWLAEGG  113 (225)
T ss_dssp             SCGGGCSSHHHHHHHHHHTTEEEEE
T ss_pred             ceeEecCCHHHHHHHHHHHhcCCCc
Confidence            9999999999988762   466765

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.37  E-value=3.1e-13  Score=128.35  Aligned_cols=100  Identities=21%  Similarity=0.093  Sum_probs=80.2

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++++|||||||+|..+..+++.+.++|+|||+|+.|++.|+.+....  ....++.|.++|+...+....++||+|+|.
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~--~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM--KRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS--CCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhc--CCCcceEEEEcchhhhcccccccceEEEEc
Confidence            368899999999999999999999899999999999999998765332  245689999999977665546789999999


Q ss_pred             cccccccc----hHhHhhe--eeecCCC
Q psy11730        368 ETIYSVAN----YNKLLTV--WCLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~----~~~~~~~--~~l~p~~  389 (496)
                      .++||+.+    ...+++.  ..|.|+|
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG  128 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGG  128 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCC
Confidence            99999843    3345554  2667766

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=1.7e-13  Score=135.41  Aligned_cols=164  Identities=24%  Similarity=0.307  Sum_probs=109.5

Q ss_pred             CCccccceeecccccCCCccccCceeeecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHH
Q psy11730        245 PLFEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQE  323 (496)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~  323 (496)
                      .||+.+....++..|+.+..+...|.         +.|..+. ..++++|||||||+|.+++.+|+.|+++|+|+|.|+ 
T Consensus         2 ~yf~~y~~~~~h~~ml~D~~r~~~y~---------~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-   71 (328)
T d1g6q1_           2 YYFDSYDHYGIHEEMLQDTVRTLSYR---------NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-   71 (328)
T ss_dssp             CCCCCCCCHHHHHHHHTCHHHHHHHH---------HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-
T ss_pred             CcchhhcCchHHHHHhCCHHHHHHHH---------HHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-
Confidence            47888888889999999987644332         1222211 247899999999999999999999999999999996 


Q ss_pred             HHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccccc---cchHhHhhe--eeecCCCCC---cccE
Q psy11730        324 VIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSV---ANYNKLLTV--WCLFPTHTP---KDLL  395 (496)
Q Consensus       324 ~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~---~~~~~~~~~--~~l~p~~~~---~~~~  395 (496)
                      ++..|++.....  +...+++++++++.++... .++||+|++..+.+++   ...+.++..  ..|.|++..   ...+
T Consensus        72 ~~~~a~~~~~~~--~~~~~i~~i~~~~~~l~~~-~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~  148 (328)
T d1g6q1_          72 IIEMAKELVELN--GFSDKITLLRGKLEDVHLP-FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSI  148 (328)
T ss_dssp             HHHHHHHHHHHT--TCTTTEEEEESCTTTSCCS-SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEE
T ss_pred             HHHHHHHHHHHh--CccccceEEEeehhhccCc-ccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecce
Confidence            556665544333  3567899999999988764 6899999998777666   345555543  234454421   1134


Q ss_pred             EEeeccCCcccccccchhhHhcCCCC
Q psy11730        396 KVTSAEGGKQRDEAITWFSIIYPRTQ  421 (496)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (496)
                      ++..............+|.+.|+...
T Consensus       149 ~~~~v~~~~l~~~~~~~~~~~~G~d~  174 (328)
T d1g6q1_         149 HLAGLEDSQYKDEKLNYWQDVYGFDY  174 (328)
T ss_dssp             EEEEECCHHHHHHHHHHTTCBTTBCC
T ss_pred             eeecccCHHHHHHhcccccccccccc
Confidence            44444433333334445555555443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.33  E-value=1e-12  Score=120.00  Aligned_cols=97  Identities=25%  Similarity=0.343  Sum_probs=78.4

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .+++++|||||||+|.++..++++|. +|+|+|+|+.|++.+++.....   ...++.+...|+.+...  +++||+|++
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~d~~~~~~--~~~fD~I~~  101 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAE---GLDNLQTDLVDLNTLTF--DGEYDFILS  101 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT---TCTTEEEEECCTTTCCC--CCCEEEEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhc---cccchhhhheecccccc--cccccEEEE
Confidence            45677999999999999999999875 7999999999999988665432   35678999999988775  689999999


Q ss_pred             ccccccccc--hHhHhhee--eecCCC
Q psy11730        367 SETIYSVAN--YNKLLTVW--CLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~--~~~~~~~~--~l~p~~  389 (496)
                      ..+++|++.  ...+++..  .|.|++
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG  128 (198)
T d2i6ga1         102 TVVMMFLEAQTIPGLIANMQRCTKPGG  128 (198)
T ss_dssp             ESCGGGSCTTHHHHHHHHHHHTEEEEE
T ss_pred             eeeeecCCHHHHHHHHHHHHHHcCCCc
Confidence            999999954  34566652  566654

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.6e-13  Score=131.97  Aligned_cols=115  Identities=23%  Similarity=0.313  Sum_probs=88.5

Q ss_pred             ccccceeecccccCCCccccCceeeecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHH
Q psy11730        247 FEYETFVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVI  325 (496)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i  325 (496)
                      |+.|...++|++|+.+..+...|.         +.|.... ..++++|||||||+|.+++.+|+.|+++|+|+|.|+.|+
T Consensus         1 ~~~y~~~~~h~~ml~D~~r~~~y~---------~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~   71 (311)
T d2fyta1           1 FSSYGHYGIHEEMLKDKIRTESYR---------DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY   71 (311)
T ss_dssp             CCGGGSHHHHHHHHTCHHHHHHHH---------HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH
T ss_pred             CCCcccchHHHHHhCCHHHHHHHH---------HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH
Confidence            456777788999999876654333         3344443 357899999999999999999999999999999999886


Q ss_pred             HHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcccccccc
Q psy11730        326 ESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       326 ~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      .. ++.....  +...++.+++++++++... ..+||+|++..+.++..
T Consensus        72 ~a-~~~~~~~--~~~~~i~~~~~~~~~l~~~-~~~~D~Ivse~~~~~~~  116 (311)
T d2fyta1          72 QA-MDIIRLN--KLEDTITLIKGKIEEVHLP-VEKVDVIISEWMGYFLL  116 (311)
T ss_dssp             HH-HHHHHHT--TCTTTEEEEESCTTTSCCS-CSCEEEEEECCCBTTBT
T ss_pred             HH-HHHHHHh--CCCccceEEEeeHHHhcCc-cccceEEEEeeeeeecc
Confidence            53 3332222  3467899999999998764 58999999988777763

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.33  E-value=8.1e-13  Score=125.68  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=82.9

Q ss_pred             HHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCC
Q psy11730        280 NFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHS  359 (496)
Q Consensus       280 ~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  359 (496)
                      .+|.......+.+|||+|||+|.++..++..+...|+|+|+|+.|++.|+++..     ...+++|+++++++++.. ++
T Consensus        84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~-----~~~~~~~~~~d~~~~~~~-~~  157 (254)
T d1xtpa_          84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA-----GMPVGKFILASMETATLP-PN  157 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT-----TSSEEEEEESCGGGCCCC-SS
T ss_pred             HHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc-----ccccceeEEccccccccC-CC
Confidence            444444345677999999999999999998888899999999999999986642     345789999999988764 68


Q ss_pred             ceeEEEEccccccccchH--hHhhee--eecCCC
Q psy11730        360 KFDIILTSETIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       360 ~fD~Ii~~~~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                      +||+|++..+++|+++.+  .++++.  .|.|++
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG  191 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNG  191 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCCc
Confidence            999999999999997754  556652  455554

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.31  E-value=3.2e-12  Score=116.19  Aligned_cols=82  Identities=23%  Similarity=0.320  Sum_probs=68.9

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      ++..+....++.|++|||+|||||.+++.++..|+.+|+|+|+++.+++.|+++        ..++.|+.+|+.++    
T Consensus        37 ~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N--------~~~~~~~~~D~~~l----  104 (197)
T d1ne2a_          37 FLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRN--------CGGVNFMVADVSEI----  104 (197)
T ss_dssp             HHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHH--------CTTSEEEECCGGGC----
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHc--------cccccEEEEehhhc----
Confidence            334444456788999999999999999999999999999999999999998764        34688999998775    


Q ss_pred             CCceeEEEEccccc
Q psy11730        358 HSKFDIILTSETIY  371 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~  371 (496)
                      .+.||+|++++++.
T Consensus       105 ~~~fD~Vi~NPPfg  118 (197)
T d1ne2a_         105 SGKYDTWIMNPPFG  118 (197)
T ss_dssp             CCCEEEEEECCCC-
T ss_pred             CCcceEEEeCcccc
Confidence            57899999999974

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.31  E-value=9.7e-13  Score=124.15  Aligned_cols=97  Identities=19%  Similarity=0.112  Sum_probs=76.6

Q ss_pred             CCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        286 VAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       286 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      ...++++|||||||+|.++..+++.|. +|+|||+|+.|++.|+++....    ..+++|+++|+.++..  .++||+|+
T Consensus        34 ~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~----~~~v~~~~~d~~~~~~--~~~fD~i~  106 (246)
T d1y8ca_          34 NNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNLNI--NRKFDLIT  106 (246)
T ss_dssp             TTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGCCC--SCCEEEEE
T ss_pred             hCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhcccccccc----Cccceeeccchhhhcc--cccccccc
Confidence            345678999999999999999999886 7999999999999998765332    3479999999998765  57899999


Q ss_pred             Ec-cccccccch---HhHhhe--eeecCCC
Q psy11730        366 TS-ETIYSVANY---NKLLTV--WCLFPTH  389 (496)
Q Consensus       366 ~~-~~l~~~~~~---~~~~~~--~~l~p~~  389 (496)
                      |. .+++|+.+.   ..+++.  ..|.|+|
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  136 (246)
T d1y8ca_         107 CCLDSTNYIIDSDDLKKYFKAVSNHLKEGG  136 (246)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHTTEEEEE
T ss_pred             eeeeeeeccCCHHHHHHHHHHHHHhCCCCe
Confidence            85 677777544   445554  2566665

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.30  E-value=6.6e-13  Score=120.13  Aligned_cols=112  Identities=13%  Similarity=0.075  Sum_probs=85.5

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCccccccc---------CCCCceEEEe
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNT---------DNLEKCKFYH  347 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~---------~~~~~v~~~~  347 (496)
                      .|.+++......++.+|||+|||+|..+..||+.|. +|+|+|+|+.|++.|+++......         ....+++|+.
T Consensus         8 ~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (201)
T d1pjza_           8 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   86 (201)
T ss_dssp             HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence            355566665556789999999999999999999875 799999999999999876532210         1235678899


Q ss_pred             cccCCccccCCCceeEEEEccccccccc--hHhHhhe--eeecCCC
Q psy11730        348 GDWGSLSAVIHSKFDIILTSETIYSVAN--YNKLLTV--WCLFPTH  389 (496)
Q Consensus       348 ~d~~~~~~~~~~~fD~Ii~~~~l~~~~~--~~~~~~~--~~l~p~~  389 (496)
                      +|+.++.......||+|++..+++++..  ...+++.  ..|.|++
T Consensus        87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG  132 (201)
T d1pjza_          87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQAC  132 (201)
T ss_dssp             ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEE
T ss_pred             ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCc
Confidence            9998887665678999999999999854  4455554  2566665

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.29  E-value=2e-12  Score=124.67  Aligned_cols=106  Identities=18%  Similarity=0.297  Sum_probs=85.7

Q ss_pred             HHHHHHhCC-C-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        278 LLNFIKDNV-A-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       278 l~~~l~~~~-~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      .+++|.+.. . .++.+|||||||+|.++..++...+  .+|+|+|+|+.|++.|+++....    ..+++|..+|++++
T Consensus        14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~----~~~~~f~~~d~~~~   89 (281)
T d2gh1a1          14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEI   89 (281)
T ss_dssp             HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS----SSEEEEEESCTTTC
T ss_pred             HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc----cccccccccccccc
Confidence            356665543 2 3578999999999999999987644  58999999999999998765332    34789999999987


Q ss_pred             cccCCCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        354 SAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +.  .++||+|++..+++|++++..++++.  .|.|+|
T Consensus        90 ~~--~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG  125 (281)
T d2gh1a1          90 EL--NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGG  125 (281)
T ss_dssp             CC--SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEE
T ss_pred             cc--cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCc
Confidence            65  46899999999999999999999874  677766

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=1.5e-12  Score=119.48  Aligned_cols=86  Identities=16%  Similarity=0.085  Sum_probs=73.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ++.+|||||||+|.++..++     .++|||+|+.|++.++++          ++.++++|+++++.. +++||+|++..
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~----------~~~~~~~d~~~l~~~-~~~fD~I~~~~   99 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR----------GVFVLKGTAENLPLK-DESFDFALMVT   99 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT----------TCEEEECBTTBCCSC-TTCEEEEEEES
T ss_pred             CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc----------ccccccccccccccc-ccccccccccc
Confidence            45689999999999988763     478999999999998754          578899999998764 68999999999


Q ss_pred             ccccccchHhHhhee--eecCCCC
Q psy11730        369 TIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       369 ~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      +++|++++..+++++  .|.|+|.
T Consensus       100 ~l~h~~d~~~~l~~~~~~L~pgG~  123 (208)
T d1vlma_         100 TICFVDDPERALKEAYRILKKGGY  123 (208)
T ss_dssp             CGGGSSCHHHHHHHHHHHEEEEEE
T ss_pred             ccccccccccchhhhhhcCCCCce
Confidence            999999999998773  6777663

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=4.8e-13  Score=131.39  Aligned_cols=156  Identities=23%  Similarity=0.227  Sum_probs=99.9

Q ss_pred             eeecccccCCCccccCceeeecchHHHHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcC
Q psy11730        252 FVNISHTDLKPNVYEGGYKIWECTFDLLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTL  330 (496)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~  330 (496)
                      ..++|++|+.+.++...|+         +.|..+. ..+|++|||||||+|.+++.+|+.|+++|+|+|.|+.+. .+++
T Consensus         4 ~~~~h~~Ml~D~~R~~~y~---------~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~-~a~~   73 (316)
T d1oria_           4 HFGIHEEMLKDEVRTLTYR---------NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-YAVK   73 (316)
T ss_dssp             HHHHHHHHHHCHHHHHHHH---------HHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHH-HHHH
T ss_pred             cchHHHHHhCCHHHHHHHH---------HHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHh-hhhh
Confidence            3457788888876554332         2333322 247899999999999999999999999999999998654 4433


Q ss_pred             cccccccCCCCceEEEecccCCccccCCCceeEEEEcccccccc---chHhHhhe--eeecCCCCC---cccEEEeeccC
Q psy11730        331 PNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVA---NYNKLLTV--WCLFPTHTP---KDLLKVTSAEG  402 (496)
Q Consensus       331 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~---~~~~~~~~--~~l~p~~~~---~~~~~~~~~~~  402 (496)
                      ....+  +...++.++++++.++... .++||+|++..+.+++.   .++.++..  ..|.|+|..   ...++......
T Consensus        74 ~~~~n--~~~~~v~~~~~~~~~~~~~-~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~  150 (316)
T d1oria_          74 IVKAN--KLDHVVTIIKGKVEEVELP-VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIED  150 (316)
T ss_dssp             HHHHT--TCTTTEEEEESCTTTCCCS-SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred             HHHHh--CCccccceEeccHHHcccc-cceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecC
Confidence            32222  3467899999999998764 58999999987776663   45666543  234444321   12344444433


Q ss_pred             CcccccccchhhHhcCCC
Q psy11730        403 GKQRDEAITWFSIIYPRT  420 (496)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~  420 (496)
                      .........+|.+.++..
T Consensus       151 ~~~~~~~~~~~~~~~g~d  168 (316)
T d1oria_         151 RQYKDYKIHWWENVYGFD  168 (316)
T ss_dssp             HHHHHHHTTTTTCBTTBC
T ss_pred             HHHHhhhccccccccccc
Confidence            222233344555555543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=4.1e-12  Score=118.22  Aligned_cols=99  Identities=17%  Similarity=0.151  Sum_probs=78.9

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHc---cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMN---GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDI  363 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~---~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~  363 (496)
                      ..++.+|||||||+|..+..+++.   ...+|+|+|+|++|++.|+++....  ....++.+..+|+.+.+   ...+|+
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~--~~~~~~~~~~~d~~~~~---~~~~d~  111 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVE---IKNASM  111 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS--CCSSCEEEECSCTTTCC---CCSEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh--cccchhhhccchhhccc---ccccee
Confidence            346889999999999999999875   3368999999999999998765432  24567888888887765   468999


Q ss_pred             EEEccccccc--cchHhHhhee--eecCCCC
Q psy11730        364 ILTSETIYSV--ANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       364 Ii~~~~l~~~--~~~~~~~~~~--~l~p~~~  390 (496)
                      |++..+++|+  ++...++++.  .|.|+|.
T Consensus       112 i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~  142 (225)
T d1im8a_         112 VILNFTLQFLPPEDRIALLTKIYEGLNPNGV  142 (225)
T ss_dssp             EEEESCGGGSCGGGHHHHHHHHHHHEEEEEE
T ss_pred             eEEeeeccccChhhHHHHHHHHHHhCCCCce
Confidence            9999999998  4667788763  6777764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.6e-12  Score=117.21  Aligned_cols=115  Identities=14%  Similarity=0.062  Sum_probs=87.9

Q ss_pred             hHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccc--------------cCC
Q psy11730        275 TFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN--------------TDN  339 (496)
Q Consensus       275 ~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~--------------~~~  339 (496)
                      ...|.+++.+... .++.+|||+|||+|..+..||+.|. +|+|||+|+.+++.|++++....              ...
T Consensus        30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            3456666665544 4688999999999999999999987 79999999999998876543221              123


Q ss_pred             CCceEEEecccCCccccCCCceeEEEEcccccccc--chHhHhhe--eeecCCCC
Q psy11730        340 LEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVA--NYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       340 ~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~--~~~~~~~~--~~l~p~~~  390 (496)
                      ..+++++++|+.++.....+.||+|+...+++++.  +.+.+++.  .+|.|++.
T Consensus       109 ~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~  163 (229)
T d2bzga1         109 SGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQ  163 (229)
T ss_dssp             TSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEE
T ss_pred             CCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcce
Confidence            46899999999988776678999999999999993  44555554  26667653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.20  E-value=1.3e-11  Score=112.33  Aligned_cols=98  Identities=19%  Similarity=0.229  Sum_probs=76.4

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      .++++|||||||+|.+++.+++.+ .+|+++|+|+.+++.++++...++ ....++++..+|+.+...  +++||+|+++
T Consensus        51 ~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~-l~~~~i~~~~~d~~~~~~--~~~fD~Ii~~  126 (194)
T d1dusa_          51 DKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNN-LDNYDIRVVHSDLYENVK--DRKYNKIITN  126 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTT-CTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred             CCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhC-CccceEEEEEcchhhhhc--cCCceEEEEc
Confidence            358899999999999999987654 689999999999999987654433 344578999999876332  6899999999


Q ss_pred             cccccccch-HhHhhe--eeecCCC
Q psy11730        368 ETIYSVANY-NKLLTV--WCLFPTH  389 (496)
Q Consensus       368 ~~l~~~~~~-~~~~~~--~~l~p~~  389 (496)
                      +++|+..+. +.+++.  ..|.|+|
T Consensus       127 ~p~~~~~~~~~~~l~~~~~~LkpgG  151 (194)
T d1dusa_         127 PPIRAGKEVLHRIIEEGKELLKDNG  151 (194)
T ss_dssp             CCSTTCHHHHHHHHHHHHHHEEEEE
T ss_pred             ccEEecchhhhhHHHHHHHhcCcCc
Confidence            999887653 556654  2566665

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.5e-11  Score=117.67  Aligned_cols=100  Identities=14%  Similarity=0.167  Sum_probs=81.6

Q ss_pred             HHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..++..+......++.+|||||||+|.++..+++.++ ..++|+|+|+.|++.|+++        ..++.|..+|+.+++
T Consensus        71 ~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~--------~~~~~~~~~d~~~l~  142 (268)
T d1p91a_          71 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------YPQVTFCVASSHRLP  142 (268)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------CTTSEEEECCTTSCS
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc--------cccccceeeehhhcc
Confidence            3455666666677889999999999999999999876 6899999999999998764        357899999999988


Q ss_pred             ccCCCceeEEEEccccccccchHhHhheeeecCCC
Q psy11730        355 AVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTH  389 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~  389 (496)
                      .. +++||+|++..+++++.....+     |.|+|
T Consensus       143 ~~-~~sfD~v~~~~~~~~~~e~~rv-----LkpgG  171 (268)
T d1p91a_         143 FS-DTSMDAIIRIYAPCKAEELARV-----VKPGG  171 (268)
T ss_dssp             BC-TTCEEEEEEESCCCCHHHHHHH-----EEEEE
T ss_pred             CC-CCCEEEEeecCCHHHHHHHHHH-----hCCCc
Confidence            75 7899999999998887554433     45655

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=3.1e-11  Score=115.22  Aligned_cols=101  Identities=15%  Similarity=0.191  Sum_probs=82.5

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      -+.+..|++.........+.+|||+|||+|.+++.++...+ .+|+|+|+|+.+++.|++++...+   ..+++|+++|+
T Consensus        91 RpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~---~~~v~~~~~d~  167 (274)
T d2b3ta1          91 RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA---IKNIHILQSDW  167 (274)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCST
T ss_pred             ccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC---cccceeeeccc
Confidence            66777788877776665677999999999999999988765 799999999999999997764433   45799999998


Q ss_pred             CCccccCCCceeEEEEccccccccchH
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVANYN  377 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~~~~  377 (496)
                      .+...  ..+||+|+|++++....+.+
T Consensus       168 ~~~~~--~~~fDlIvsNPPYi~~~~~~  192 (274)
T d2b3ta1         168 FSALA--GQQFAMIVSNPPYIDEQDPH  192 (274)
T ss_dssp             TGGGT--TCCEEEEEECCCCBCTTCHH
T ss_pred             ccccC--CCceeEEEecchhhhhhhhc
Confidence            76433  57999999999987766553

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.18  E-value=3.3e-11  Score=110.12  Aligned_cols=89  Identities=25%  Similarity=0.325  Sum_probs=72.2

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      .++..+....+++|++|||+|||+|.+++.++..|+.+|+|+|+++.+++.++++....    ..+..++.+|..++   
T Consensus        34 ~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~----~~~~~~~~~d~~~~---  106 (201)
T d1wy7a1          34 ELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF----KGKFKVFIGDVSEF---  106 (201)
T ss_dssp             HHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG----TTSEEEEESCGGGC---
T ss_pred             HHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc----CCCceEEECchhhh---
Confidence            34444445567899999999999999999999999899999999999999998765332    34678888887664   


Q ss_pred             CCCceeEEEEccccccc
Q psy11730        357 IHSKFDIILTSETIYSV  373 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~  373 (496)
                       .+.||+|++++++...
T Consensus       107 -~~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1         107 -NSRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             -CCCCSEEEECCCCSSS
T ss_pred             -CCcCcEEEEcCccccc
Confidence             5789999999997654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.16  E-value=8.1e-12  Score=118.26  Aligned_cols=110  Identities=18%  Similarity=0.158  Sum_probs=82.4

Q ss_pred             eecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        271 IWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       271 ~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .++.+..++++|.+.. .+|++|||+|||+|.+++.+++.| .+|+|+|+|+.|++.|+++...++    -++.+.++|+
T Consensus       103 ~H~TT~l~l~~l~~~~-~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~----~~~~~~~~d~  176 (254)
T d2nxca1         103 HHETTRLALKALARHL-RPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNG----VRPRFLEGSL  176 (254)
T ss_dssp             CSHHHHHHHHHHHHHC-CTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTT----CCCEEEESCH
T ss_pred             ccchhhHHHHHHHhhc-CccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcC----CceeEEeccc
Confidence            4777788888887653 478999999999999999988877 479999999999999997654432    2567888887


Q ss_pred             CCccccCCCceeEEEEccccccccchHhHhheeeecCCC
Q psy11730        351 GSLSAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTH  389 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~  389 (496)
                      .+...  .++||+|+++...+.+...-..+. ..|.|+|
T Consensus       177 ~~~~~--~~~fD~V~ani~~~~l~~l~~~~~-~~LkpGG  212 (254)
T d2nxca1         177 EAALP--FGPFDLLVANLYAELHAALAPRYR-EALVPGG  212 (254)
T ss_dssp             HHHGG--GCCEEEEEEECCHHHHHHHHHHHH-HHEEEEE
T ss_pred             ccccc--ccccchhhhccccccHHHHHHHHH-HhcCCCc
Confidence            76432  579999999866665544322222 2466665

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.14  E-value=1.8e-11  Score=106.93  Aligned_cols=91  Identities=14%  Similarity=0.218  Sum_probs=73.7

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      +..+|...  ++|++|||+|||||.+++.++.+|+++|+++|.++.+++.++++....+  ...+++++++|+.+.....
T Consensus         5 ~fn~l~~~--~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~--~~~~~~ii~~D~~~~l~~~   80 (152)
T d2esra1           5 IFNMIGPY--FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAIDCL   80 (152)
T ss_dssp             HHHHHCSC--CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHHHHB
T ss_pred             HHHHHHhh--CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcc--cccchhhhccccccccccc
Confidence            33444432  5799999999999999999999999999999999999999887664433  4567999999988765444


Q ss_pred             CCceeEEEEcccccc
Q psy11730        358 HSKFDIILTSETIYS  372 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~  372 (496)
                      .++||+|++++|+..
T Consensus        81 ~~~fDiIf~DPPy~~   95 (152)
T d2esra1          81 TGRFDLVFLDPPYAK   95 (152)
T ss_dssp             CSCEEEEEECCSSHH
T ss_pred             ccccceeEechhhcc
Confidence            689999999988643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.4e-11  Score=115.02  Aligned_cols=108  Identities=19%  Similarity=0.181  Sum_probs=82.4

Q ss_pred             HHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-C
Q psy11730        279 LNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-I  357 (496)
Q Consensus       279 ~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  357 (496)
                      .+.+.+....+|++|||||||+|..+..+++.++.+|+|||+|+.|++.|+++...    ...++.++..++...... .
T Consensus        43 ~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~  118 (229)
T d1zx0a1          43 MHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR----QTHKVIPLKGLWEDVAPTLP  118 (229)
T ss_dssp             HHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGG----CSSEEEEEESCHHHHGGGSC
T ss_pred             HHHHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhh----cccccccccccccccccccc
Confidence            34444444457889999999999999999988878999999999999999877533    245677788876654332 2


Q ss_pred             CCceeEEE-----EccccccccchHhHhhe--eeecCCCC
Q psy11730        358 HSKFDIIL-----TSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       358 ~~~fD~Ii-----~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      .++||.|+     +...++|+.+.+.++++  ..|.|+|.
T Consensus       119 ~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~  158 (229)
T d1zx0a1         119 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV  158 (229)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEE
T ss_pred             cccccceeecccccccccccccCHHHHHHHHHHHcCCCcE
Confidence            57888887     46777888888888886  37777763

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.13  E-value=7.1e-11  Score=110.11  Aligned_cols=118  Identities=15%  Similarity=0.095  Sum_probs=92.8

Q ss_pred             ceeeecchH-HHHHHHHhC---CCCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCC
Q psy11730        268 GYKIWECTF-DLLNFIKDN---VAVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLE  341 (496)
Q Consensus       268 ~~~~~~~~~-~l~~~l~~~---~~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~  341 (496)
                      .|+.|..-. .|+..|...   ++++ |.+|||||||+|.++..++..++ ..|+|+|+|+.|++.++.++.     ...
T Consensus        48 e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~-----~~~  122 (230)
T d1g8sa_          48 EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA-----ERE  122 (230)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT-----TCT
T ss_pred             eeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh-----hhc
Confidence            578887754 566666653   3344 78999999999999999998765 689999999999998877642     346


Q ss_pred             ceEEEecccCCccccCCCceeEEEEccccccccchHhHhhee--eecCCCC
Q psy11730        342 KCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANYNKLLTVW--CLFPTHT  390 (496)
Q Consensus       342 ~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~~  390 (496)
                      ++.++.+|........+..+|++++...+++..+.+.++++.  .|.|++.
T Consensus       123 ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~  173 (230)
T d1g8sa_         123 NIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGY  173 (230)
T ss_dssp             TEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEE
T ss_pred             ccceEEEeeccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCce
Confidence            788899998877766567888888888888888888888763  6777663

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.11  E-value=5.5e-11  Score=107.22  Aligned_cols=98  Identities=18%  Similarity=0.135  Sum_probs=75.1

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      ..++.+|||||||+|.+++.+|+.+ .+|+|+|++++|++.|+++....+  ...+++++++|+.+.... ...||+|++
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~g--l~~~v~~~~gda~~~~~~-~~~~D~v~~  106 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPEALCK-IPDIDIAVV  106 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHHHHHTT-SCCEEEEEE
T ss_pred             CCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcC--CCcceEEEECchhhcccc-cCCcCEEEE
Confidence            3468899999999999999988764 689999999999999998765433  346999999998877654 579999999


Q ss_pred             ccccccccchHhHhheeeecCCC
Q psy11730        367 SETIYSVANYNKLLTVWCLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~~~~~~~~~l~p~~  389 (496)
                      ....+++...-..+.. .|.|++
T Consensus       107 ~~~~~~~~~~~~~~~~-~LkpgG  128 (186)
T d1l3ia_         107 GGSGGELQEILRIIKD-KLKPGG  128 (186)
T ss_dssp             SCCTTCHHHHHHHHHH-TEEEEE
T ss_pred             eCccccchHHHHHHHH-HhCcCC
Confidence            9887766443222221 355554

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=1.4e-10  Score=106.97  Aligned_cols=105  Identities=19%  Similarity=0.198  Sum_probs=79.0

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      .+...+.+... -+|.+|||||||+|.++..+++...  .+|+++|+++++++.|+++....   ...|+.+.++|..+.
T Consensus        62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~---~~~n~~~~~~d~~~~  138 (213)
T d1dl5a1          62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL---GIENVIFVCGDGYYG  138 (213)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGC
T ss_pred             hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh---cccccccccCchHHc
Confidence            33333344444 4588999999999999999987543  68999999999999998875433   467899999998776


Q ss_pred             cccCCCceeEEEEccccccccchHhHhheeeecCCC
Q psy11730        354 SAVIHSKFDIILTSETIYSVANYNKLLTVWCLFPTH  389 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~~~~~~~~~~~~l~p~~  389 (496)
                      ... .++||+|++..+++++++  .+++  .|.|+|
T Consensus       139 ~~~-~~~fD~I~~~~~~~~~p~--~l~~--~LkpGG  169 (213)
T d1dl5a1         139 VPE-FSPYDVIFVTVGVDEVPE--TWFT--QLKEGG  169 (213)
T ss_dssp             CGG-GCCEEEEEECSBBSCCCH--HHHH--HEEEEE
T ss_pred             ccc-ccchhhhhhhccHHHhHH--HHHH--hcCCCc
Confidence            554 578999999999998753  4444  355555

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.4e-10  Score=111.21  Aligned_cols=98  Identities=17%  Similarity=0.154  Sum_probs=70.6

Q ss_pred             eEEEecCcCCHHHHHHHHc----cC---CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc-----cccCCC
Q psy11730        292 SVLDVGCGAGLLGLYTLMN----GA---AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL-----SAVIHS  359 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~----~~---~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~  359 (496)
                      +|||||||+|.++..++..    ..   .+++|||+|+.|++.++++..........++.+...++++.     ....++
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ  122 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence            7999999999998887653    11   36899999999999998765433222222334445554432     112267


Q ss_pred             ceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        360 KFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       360 ~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      +||+|++..++||++++..+++.+  .|.|+|
T Consensus       123 ~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG  154 (280)
T d1jqea_         123 KWDFIHMIQMLYYVKDIPATLKFFHSLLGTNA  154 (280)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHTEEEEE
T ss_pred             ceeEEEEccceecCCCHHHHHHHHHhhCCCCC
Confidence            999999999999999999998873  677765

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=2.5e-10  Score=108.15  Aligned_cols=104  Identities=15%  Similarity=0.106  Sum_probs=79.0

Q ss_pred             HHHhCCCC-CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        281 FIKDNVAV-DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       281 ~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      +|....++ +|.+|||+|||+|.+++.||.. ++ .+|+++|+++++++.|+++..........++.+.++|+.+.... 
T Consensus        87 ~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~-  165 (264)
T d1i9ga_          87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP-  165 (264)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC-
T ss_pred             HHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc-
Confidence            33333333 5889999999999999999986 44 79999999999999999875443344568999999998876554 


Q ss_pred             CCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730        358 HSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      ++.||.|++     +++++..++..  ..|.|++.
T Consensus       166 ~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~  195 (264)
T d1i9ga_         166 DGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGV  195 (264)
T ss_dssp             TTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEE
T ss_pred             CCCcceEEE-----ecCCHHHHHHHHHhccCCCCE
Confidence            689999987     45666666654  25666653

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.99  E-value=5e-10  Score=102.75  Aligned_cols=116  Identities=16%  Similarity=0.054  Sum_probs=83.4

Q ss_pred             ceeeecchH-HHHHHHHhC--CCCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCc
Q psy11730        268 GYKIWECTF-DLLNFIKDN--VAVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEK  342 (496)
Q Consensus       268 ~~~~~~~~~-~l~~~l~~~--~~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~  342 (496)
                      +|+.|..-. .|+..+...  ++++ |.+|||||||+|..+..+++..+ ++|+|+|+|+.|++.+++++..     ..|
T Consensus        31 ~~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-----~~n  105 (209)
T d1nt2a_          31 GYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----RNN  105 (209)
T ss_dssp             TEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----CSS
T ss_pred             ceeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-----cCC
Confidence            577787543 566666543  3444 78999999999999999998654 7899999999999998876532     358


Q ss_pred             eEEEecccCCccccCC--CceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730        343 CKFYHGDWGSLSAVIH--SKFDIILTSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       343 v~~~~~d~~~~~~~~~--~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                      +.++.+|.........  ..+|+|++  .+.|..+...++++  ..|.|+|.
T Consensus       106 i~~i~~d~~~~~~~~~~~~~vd~v~~--~~~~~~~~~~~l~~~~~~LkpgG~  155 (209)
T d1nt2a_         106 IIPLLFDASKPWKYSGIVEKVDLIYQ--DIAQKNQIEILKANAEFFLKEKGE  155 (209)
T ss_dssp             EEEECSCTTCGGGTTTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEE
T ss_pred             ceEEEeeccCccccccccceEEEEEe--cccChhhHHHHHHHHHHHhccCCe
Confidence            9999999887665432  34555544  35666677777665  36777664

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.93  E-value=5.1e-10  Score=105.73  Aligned_cols=106  Identities=16%  Similarity=0.121  Sum_probs=80.0

Q ss_pred             HHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        279 LNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       279 ~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      ++.+.+..++. .++|||||||+|.++..+++..+ .+++++|+ +++++.++++....  +...+++++.+|+.+..  
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~rv~~~~~D~~~~~--  143 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE--GLSDRVDVVEGDFFEPL--  143 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--TCTTTEEEEECCTTSCC--
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHh--hcccchhhccccchhhc--
Confidence            34444555554 57999999999999999998876 68999998 67888887765443  24578999999986532  


Q ss_pred             CCCceeEEEEccccccccchH--hHhhee--eecCCCC
Q psy11730        357 IHSKFDIILTSETIYSVANYN--KLLTVW--CLFPTHT  390 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~~~--~~~~~~--~l~p~~~  390 (496)
                       ..+||+|++..++||+++.+  .++++.  .|.|++.
T Consensus       144 -~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~  180 (253)
T d1tw3a2         144 -PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGR  180 (253)
T ss_dssp             -SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEE
T ss_pred             -ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcE
Confidence             46799999999999997664  456552  5667653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=4.3e-10  Score=108.49  Aligned_cols=101  Identities=17%  Similarity=0.247  Sum_probs=70.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccC-CCCceEEEecccCCcc--ccCCCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD-NLEKCKFYHGDWGSLS--AVIHSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~~v~~~~~d~~~~~--~~~~~~fD~Ii  365 (496)
                      .+++|||||||+|.++..|++.|. +|+|+|+|+.|++.|+++....... ...+..+...++..+.  ....++||+|+
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~  134 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  134 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence            467999999999999999999875 7999999999999988765332210 1123344555554332  12257899999


Q ss_pred             Ec-cccccccc-------hHhHhhe--eeecCCCC
Q psy11730        366 TS-ETIYSVAN-------YNKLLTV--WCLFPTHT  390 (496)
Q Consensus       366 ~~-~~l~~~~~-------~~~~~~~--~~l~p~~~  390 (496)
                      |. .+++|+++       ...++++  ..|.|+|.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  169 (292)
T d1xvaa_         135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL  169 (292)
T ss_dssp             ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEE
T ss_pred             EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcE
Confidence            84 58888854       3446655  26777763

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=4.6e-10  Score=100.80  Aligned_cols=90  Identities=17%  Similarity=0.194  Sum_probs=73.2

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      +.+.+|||++||||.+++.++.+|+.+|++||.++.+++.++++....   ...++.++.+|+.+........||+|+++
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~---~~~~~~ii~~d~~~~l~~~~~~fDlIf~D  118 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL---KAGNARVVNSNAMSFLAQKGTPHNIVFVD  118 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT---TCCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhc---cccceeeeeecccccccccccccCEEEEc
Confidence            478899999999999999999999999999999999999988765332   35688999999877655446789999999


Q ss_pred             cccccccchHhHhh
Q psy11730        368 ETIYSVANYNKLLT  381 (496)
Q Consensus       368 ~~l~~~~~~~~~~~  381 (496)
                      +|+.. ...+.++.
T Consensus       119 PPY~~-~~~~~~l~  131 (183)
T d2fpoa1         119 PPFRR-GLLEETIN  131 (183)
T ss_dssp             CSSST-TTHHHHHH
T ss_pred             Ccccc-chHHHHHH
Confidence            99654 34444443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.89  E-value=1.1e-09  Score=103.00  Aligned_cols=100  Identities=11%  Similarity=0.243  Sum_probs=72.4

Q ss_pred             HHHhCCCC-CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        281 FIKDNVAV-DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       281 ~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      +|....++ +|.+|||+|||+|.++..+|+. ++ ++|+++|.++++++.|+++....  ....++++.++|+.+...  
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~--~~~~nv~~~~~Di~~~~~--  151 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF--YDIGNVRTSRSDIADFIS--  151 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT--SCCTTEEEECSCTTTCCC--
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--cCCCceEEEEeeeecccc--
Confidence            33444444 4889999999999999999975 44 79999999999999998865332  346799999999987643  


Q ss_pred             CCceeEEEEccccccccchHhHhhe--eeecCCC
Q psy11730        358 HSKFDIILTSETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      +..||.|+++     ++++..+++.  ..|.|++
T Consensus       152 ~~~fD~V~ld-----~p~p~~~l~~~~~~LKpGG  180 (250)
T d1yb2a1         152 DQMYDAVIAD-----IPDPWNHVQKIASMMKPGS  180 (250)
T ss_dssp             SCCEEEEEEC-----CSCGGGSHHHHHHTEEEEE
T ss_pred             cceeeeeeec-----CCchHHHHHHHHHhcCCCc
Confidence            6789999975     3344444443  2566665

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.87  E-value=1.4e-09  Score=99.30  Aligned_cols=98  Identities=11%  Similarity=-0.025  Sum_probs=77.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-cCCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-VIHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~fD~Ii~  366 (496)
                      .+..|||||||+|.++..+|+..+ ..++|+|+++.++..+.++....   ...|+.++++|+..+.. ..++++|.|++
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~---~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS---EAQNVKLLNIDADTLTDVFEPGEVKRVYL  105 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS---CCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHH---hccCchhcccchhhhhcccCchhhhcccc
Confidence            345899999999999999999887 78999999999999988776544   36799999999887652 34789999999


Q ss_pred             ccccccccch--------HhHhhe--eeecCCC
Q psy11730        367 SETIYSVANY--------NKLLTV--WCLFPTH  389 (496)
Q Consensus       367 ~~~l~~~~~~--------~~~~~~--~~l~p~~  389 (496)
                      ..+..+....        ..+++.  ..|.|+|
T Consensus       106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG  138 (204)
T d2fcaa1         106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGG  138 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSC
T ss_pred             ccccccchhhhcchhhhHHHHHHHHHHhCCCCc
Confidence            8888776543        234443  3577766

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.87  E-value=3.5e-09  Score=97.77  Aligned_cols=91  Identities=16%  Similarity=0.127  Sum_probs=70.7

Q ss_pred             HHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        278 LLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       278 l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      +...+.+...+ ++.+|||||||+|+++..|++.+ .+|+++|.++++++.|+++..     ...|+.+..+|.......
T Consensus        58 ~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~-----~~~nv~~~~~d~~~g~~~  131 (224)
T d1vbfa_          58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLS-----YYNNIKLILGDGTLGYEE  131 (224)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHT-----TCSSEEEEESCGGGCCGG
T ss_pred             hHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHh-----cccccccccCchhhcchh
Confidence            33334444444 58899999999999999988875 689999999999999986542     356999999997654332


Q ss_pred             CCCceeEEEEccccccccc
Q psy11730        357 IHSKFDIILTSETIYSVAN  375 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~  375 (496)
                       .++||+|++..++.++++
T Consensus       132 -~~pfD~Iiv~~a~~~ip~  149 (224)
T d1vbfa_         132 -EKPYDRVVVWATAPTLLC  149 (224)
T ss_dssp             -GCCEEEEEESSBBSSCCH
T ss_pred             -hhhHHHHHhhcchhhhhH
Confidence             578999999998887753

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=5.1e-10  Score=105.39  Aligned_cols=103  Identities=15%  Similarity=0.152  Sum_probs=69.1

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCC--------------------------
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNL--------------------------  340 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~--------------------------  340 (496)
                      ..++.+|||||||+|.+++.++..+..+|+|+|+|+.|++.|+++.........                          
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            456789999999999999888888888999999999999999876432211000                          


Q ss_pred             Cce-EEEeccc--CCcc-ccCCCceeEEEEcccccccc----chHhHhhe--eeecCCC
Q psy11730        341 EKC-KFYHGDW--GSLS-AVIHSKFDIILTSETIYSVA----NYNKLLTV--WCLFPTH  389 (496)
Q Consensus       341 ~~v-~~~~~d~--~~~~-~~~~~~fD~Ii~~~~l~~~~----~~~~~~~~--~~l~p~~  389 (496)
                      ..+ .....+.  .... ....++||+|++..+++|+.    ++..+++.  .+|.|+|
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG  187 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGG  187 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCc
Confidence            000 1111111  1111 11257899999999999995    45556665  3677765

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.84  E-value=2.7e-09  Score=100.94  Aligned_cols=89  Identities=20%  Similarity=0.129  Sum_probs=72.8

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      +|.+|||+|||+|.+++.+|+.+.++|+++|+|+.+++.++++...++  ...+++++++|+.++..  .+.||.|++++
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~--l~~~v~~~~~D~~~~~~--~~~~D~Ii~~~  182 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG--ENIADRILMGY  182 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC--CSCEEEEEECC
T ss_pred             CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhC--CCceEEEEEcchHHhcc--CCCCCEEEECC
Confidence            588999999999999999999988899999999999999887764433  34579999999988765  57899999987


Q ss_pred             ccccccchHhHhh
Q psy11730        369 TIYSVANYNKLLT  381 (496)
Q Consensus       369 ~l~~~~~~~~~~~  381 (496)
                      +.....-++..+.
T Consensus       183 p~~~~~~l~~a~~  195 (260)
T d2frna1         183 VVRTHEFIPKALS  195 (260)
T ss_dssp             CSSGGGGHHHHHH
T ss_pred             CCchHHHHHHHHh
Confidence            7655554555444

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.83  E-value=8.1e-09  Score=94.67  Aligned_cols=98  Identities=13%  Similarity=0.125  Sum_probs=76.0

Q ss_pred             HHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC
Q psy11730        278 LLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI  357 (496)
Q Consensus       278 l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  357 (496)
                      .+..++.....++.+|||||||+|+.+..++.....+|+++|.++++++.++++....   ...|+.+.++|..+.... 
T Consensus        67 ~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~---g~~nv~~~~gd~~~g~~~-  142 (215)
T d1jg1a_          67 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA---GVKNVHVILGDGSKGFPP-  142 (215)
T ss_dssp             HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGCCGG-
T ss_pred             HHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHc---CCceeEEEECccccCCcc-
Confidence            3444433334458899999999999999998875567999999999999998876443   368999999998765433 


Q ss_pred             CCceeEEEEccccccccchHhHhh
Q psy11730        358 HSKFDIILTSETIYSVANYNKLLT  381 (496)
Q Consensus       358 ~~~fD~Ii~~~~l~~~~~~~~~~~  381 (496)
                      ...||+|++..++.+++  +.+++
T Consensus       143 ~~pfD~Iiv~~a~~~ip--~~l~~  164 (215)
T d1jg1a_         143 KAPYDVIIVTAGAPKIP--EPLIE  164 (215)
T ss_dssp             GCCEEEEEECSBBSSCC--HHHHH
T ss_pred             cCcceeEEeecccccCC--HHHHH
Confidence            68999999999998764  34554

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.3e-09  Score=106.87  Aligned_cols=115  Identities=14%  Similarity=0.106  Sum_probs=81.7

Q ss_pred             cchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccc------cCCCCceE
Q psy11730        273 ECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMN------TDNLEKCK  344 (496)
Q Consensus       273 ~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~------~~~~~~v~  344 (496)
                      +....++..+.+...++ +.+|||||||+|.+++.+|+.. ..+++|||+|+.|++.|+......+      .....+++
T Consensus       134 e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~  213 (328)
T d1nw3a_         134 ETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  213 (328)
T ss_dssp             CCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             hhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence            34445555555555554 7899999999999999988754 4689999999999999876543321      12356899


Q ss_pred             EEecccCCccccCCC--ceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        345 FYHGDWGSLSAVIHS--KFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       345 ~~~~d~~~~~~~~~~--~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      |+++|+.+.+.. +.  .+|+|+++. +.|.+++...+++.  .|.|++
T Consensus       214 ~~~gd~~~~~~~-~~~~~advi~~~~-~~f~~~~~~~l~e~~r~LKpGg  260 (328)
T d1nw3a_         214 LERGDFLSEEWR-ERIANTSVIFVNN-FAFGPEVDHQLKERFANMKEGG  260 (328)
T ss_dssp             EEECCTTSHHHH-HHHHHCSEEEECC-TTTCHHHHHHHHHHHTTCCTTC
T ss_pred             EEECcccccccc-cccCcceEEEEcc-eecchHHHHHHHHHHHhCCCCc
Confidence            999999987653 23  357777754 55677777776652  555654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.7e-09  Score=97.83  Aligned_cols=96  Identities=21%  Similarity=0.179  Sum_probs=73.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCccccccc--CCCCceEEEecccCCccccCCCceeEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNT--DNLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      +|.+|||||||+|..+..+|+. +. .+|+++|.++++++.|+++....+.  ....++.+..+|....... ...||+|
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~-~~~fD~I  154 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-EAPYDAI  154 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-GCCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch-hhhhhhh
Confidence            5889999999999999998875 43 6899999999999999877544332  2356889999998765543 5789999


Q ss_pred             EEccccccccchHhHhheeeecCCC
Q psy11730        365 LTSETIYSVANYNKLLTVWCLFPTH  389 (496)
Q Consensus       365 i~~~~l~~~~~~~~~~~~~~l~p~~  389 (496)
                      ++..+++++++  .+++  .|.|+|
T Consensus       155 ~~~~~~~~ip~--~l~~--~LkpGG  175 (224)
T d1i1na_         155 HVGAAAPVVPQ--ALID--QLKPGG  175 (224)
T ss_dssp             EECSBBSSCCH--HHHH--TEEEEE
T ss_pred             hhhcchhhcCH--HHHh--hcCCCc
Confidence            99999988743  4444  244444

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.79  E-value=6.6e-09  Score=94.64  Aligned_cols=83  Identities=13%  Similarity=0.036  Sum_probs=68.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-CCCceeEEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-IHSKFDIILT  366 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~fD~Ii~  366 (496)
                      .+..|||||||+|.++..+|+..+ ..++|+|+++.++..|.++....+   ..|+.++.+|+..+... .+.++|.|++
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~---l~Ni~~~~~da~~l~~~~~~~~~~~i~i  107 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLYL  107 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc---cccceeeecCHHHHhhhccCCceehhcc
Confidence            345899999999999999999887 789999999999999887665443   67999999999887633 3678999998


Q ss_pred             cccccccc
Q psy11730        367 SETIYSVA  374 (496)
Q Consensus       367 ~~~l~~~~  374 (496)
                      ..+-.+..
T Consensus       108 ~fPdPw~K  115 (204)
T d1yzha1         108 NFSDPWPK  115 (204)
T ss_dssp             ESCCCCCS
T ss_pred             cccccccc
Confidence            88776654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.76  E-value=6e-09  Score=98.83  Aligned_cols=99  Identities=15%  Similarity=0.147  Sum_probs=78.4

Q ss_pred             ecchHHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEeccc
Q psy11730        272 WECTFDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDW  350 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~  350 (496)
                      .+.+..|++.+.+... ....+|||+|||+|..++.+++....+|+|+|+|+++++.|++++...+  ...++.+..+++
T Consensus        92 RpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~--~~~~~~i~~~~~  169 (271)
T d1nv8a_          92 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEF  169 (271)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESST
T ss_pred             hhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcC--CCceeEEeeccc
Confidence            5667777777766542 2356899999999999999988777899999999999999998765433  355778888998


Q ss_pred             CCccccCCCceeEEEEcccccc
Q psy11730        351 GSLSAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       351 ~~~~~~~~~~fD~Ii~~~~l~~  372 (496)
                      .+......+.||+|+||+|+..
T Consensus       170 ~~~~~~~~~~fDlIVsNPPYI~  191 (271)
T d1nv8a_         170 LEPFKEKFASIEMILSNPPYVK  191 (271)
T ss_dssp             TGGGGGGTTTCCEEEECCCCBC
T ss_pred             ccccccccCcccEEEEcccccC
Confidence            8765544579999999999864

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.76  E-value=3.4e-09  Score=94.91  Aligned_cols=91  Identities=16%  Similarity=0.139  Sum_probs=72.1

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc---CCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV---IHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~I  364 (496)
                      ..|.+|||++||||.+++.++.+|+.+|++||.++++++.++++....+  ...+++++++|+.+....   ...+||+|
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~--~~~~~~i~~~D~~~~l~~~~~~~~~fDlI  117 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMDANRALEQFYEEKLQFDLV  117 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccchhhhhhhcccCCCcceE
Confidence            5789999999999999999999999999999999999999887754433  345899999998764322   24689999


Q ss_pred             EEccccccccchHhHhh
Q psy11730        365 LTSETIYSVANYNKLLT  381 (496)
Q Consensus       365 i~~~~l~~~~~~~~~~~  381 (496)
                      ++.+|+.. .+...++.
T Consensus       118 flDPPY~~-~~~~~~l~  133 (182)
T d2fhpa1         118 LLDPPYAK-QEIVSQLE  133 (182)
T ss_dssp             EECCCGGG-CCHHHHHH
T ss_pred             Eechhhhh-hHHHHHHH
Confidence            99999643 33344443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.75  E-value=3.3e-09  Score=94.01  Aligned_cols=92  Identities=12%  Similarity=0.092  Sum_probs=64.1

Q ss_pred             HHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC-Cccc
Q psy11730        277 DLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG-SLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~-~~~~  355 (496)
                      .|.++|.... ..+.+|||+|||+|.+++.++.+|+ +|+++|.|+.+++.++++....+  ...++....+|.. ....
T Consensus        30 ~lf~~l~~~~-~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~--~~~~v~~~~~d~~~~~~~  105 (171)
T d1ws6a1          30 ALFDYLRLRY-PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTG--LGARVVALPVEVFLPEAK  105 (171)
T ss_dssp             HHHHHHHHHC-TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHT--CCCEEECSCHHHHHHHHH
T ss_pred             HHHHHhhccc-cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhc--cccceeeeehhccccccc
Confidence            3455555432 3688999999999999999888886 78899999999999987765443  2233433333321 1112


Q ss_pred             cCCCceeEEEEcccccc
Q psy11730        356 VIHSKFDIILTSETIYS  372 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~  372 (496)
                      ....+||+|++++|+..
T Consensus       106 ~~~~~fD~If~DPPY~~  122 (171)
T d1ws6a1         106 AQGERFTVAFMAPPYAM  122 (171)
T ss_dssp             HTTCCEEEEEECCCTTS
T ss_pred             ccCCccceeEEcccccc
Confidence            22578999999999653

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.8e-09  Score=101.12  Aligned_cols=106  Identities=12%  Similarity=0.075  Sum_probs=71.3

Q ss_pred             CCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCC-------------------------
Q psy11730        285 NVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDN-------------------------  339 (496)
Q Consensus       285 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~-------------------------  339 (496)
                      ....+|.+|||||||+|.+++..+.....+|+|+|+|+.|++.+++.........                         
T Consensus        50 ~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  129 (263)
T d2g72a1          50 TGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  129 (263)
T ss_dssp             TSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence            3456789999999999999877677777899999999999999876432211000                         


Q ss_pred             --CCceEEEecccCCcc-----ccCCCceeEEEEcccccccc----chHhHhhe--eeecCCCC
Q psy11730        340 --LEKCKFYHGDWGSLS-----AVIHSKFDIILTSETIYSVA----NYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       340 --~~~v~~~~~d~~~~~-----~~~~~~fD~Ii~~~~l~~~~----~~~~~~~~--~~l~p~~~  390 (496)
                        .....+...|+....     ....++||+|++..+++++.    ++..++++  .+|.|+|.
T Consensus       130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~  193 (263)
T d2g72a1         130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH  193 (263)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCE
Confidence              001123344443211     11146899999999999984    45555655  37778763

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.1e-08  Score=96.22  Aligned_cols=84  Identities=10%  Similarity=-0.055  Sum_probs=63.5

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc-----cCCCceeE
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA-----VIHSKFDI  363 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~fD~  363 (496)
                      ..+|||||||+|.+++.++...+ .+|+|+|+|+++++.|+++...++  ...++.+.+.+..+...     ...+.||+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~--l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhC--CCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            45899999999999999987654 799999999999999998765443  45678888776554322     11457999


Q ss_pred             EEEccccccccc
Q psy11730        364 ILTSETIYSVAN  375 (496)
Q Consensus       364 Ii~~~~l~~~~~  375 (496)
                      |+|++|++...+
T Consensus       140 ivsNPPY~~~~e  151 (250)
T d2h00a1         140 CMCNPPFFANQL  151 (250)
T ss_dssp             EEECCCCC----
T ss_pred             EEecCcccccch
Confidence            999999987644

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=1.2e-08  Score=96.63  Aligned_cols=103  Identities=14%  Similarity=0.070  Sum_probs=74.9

Q ss_pred             HHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHcc-C-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        279 LNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNG-A-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       279 ~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~-~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      +.+|....++ +|.+|||+|||+|.++..+|+.. + ++|+++|+++++++.|+++....  +...++.+...|......
T Consensus        92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~--g~~~~v~~~~~d~~~~~~  169 (266)
T d1o54a_          92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW--GLIERVTIKVRDISEGFD  169 (266)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT--TCGGGEEEECCCGGGCCS
T ss_pred             HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh--ccccCcEEEecccccccc
Confidence            3344444444 58899999999999999998763 3 79999999999999998875433  245788888888654322


Q ss_pred             cCCCceeEEEEccccccccchHhHhhe--eeecCCCC
Q psy11730        356 VIHSKFDIILTSETIYSVANYNKLLTV--WCLFPTHT  390 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~~  390 (496)
                        ...||.|+.     +++++..+++.  ..|.|++.
T Consensus       170 --~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~  199 (266)
T d1o54a_         170 --EKDVDALFL-----DVPDPWNYIDKCWEALKGGGR  199 (266)
T ss_dssp             --CCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEE
T ss_pred             --ccceeeeEe-----cCCCHHHHHHHHHhhcCCCCE
Confidence              567998875     45677777665  26677663

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.65  E-value=1.3e-08  Score=99.41  Aligned_cols=98  Identities=20%  Similarity=0.106  Sum_probs=74.8

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWG  351 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~  351 (496)
                      +.+......++.... .+|++|||+|||+|.+++.++..|+++|+++|+|+.+++.++++...++  ...+++++++|+.
T Consensus       129 flDqr~~r~~~~~~~-~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ng--l~~~~~~~~~d~~  205 (324)
T d2as0a2         129 FLDQRENRLALEKWV-QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNG--VEDRMKFIVGSAF  205 (324)
T ss_dssp             CSTTHHHHHHHGGGC-CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHH
T ss_pred             ccchhhHHHHHHhhc-CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcC--CCccceeeechhh
Confidence            344444455555433 2588999999999999999999999999999999999999988764443  3458899999976


Q ss_pred             Cccc---cCCCceeEEEEcccccc
Q psy11730        352 SLSA---VIHSKFDIILTSETIYS  372 (496)
Q Consensus       352 ~~~~---~~~~~fD~Ii~~~~l~~  372 (496)
                      +...   ....+||+|+++++...
T Consensus       206 ~~~~~~~~~~~~fD~Vi~DpP~~~  229 (324)
T d2as0a2         206 EEMEKLQKKGEKFDIVVLDPPAFV  229 (324)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCSC
T ss_pred             hhhHHHHhccCCCCchhcCCcccc
Confidence            5432   12578999999888654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.62  E-value=4.4e-08  Score=90.49  Aligned_cols=115  Identities=17%  Similarity=0.130  Sum_probs=81.1

Q ss_pred             ceeeecchH-HHHHHHHhC---CCC-CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCC
Q psy11730        268 GYKIWECTF-DLLNFIKDN---VAV-DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNL  340 (496)
Q Consensus       268 ~~~~~~~~~-~l~~~l~~~---~~~-~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~  340 (496)
                      .|+.|+--. .|+..|...   ..+ +|.+|||||||+|.++..+++. |. ++|+|+|+|+.|++.+++++.     ..
T Consensus        47 e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~-----~~  121 (227)
T d1g8aa_          47 EYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE-----ER  121 (227)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS-----SC
T ss_pred             eEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHH-----hc
Confidence            577886533 455556543   334 4889999999999999999986 44 799999999999999876542     24


Q ss_pred             CceEEEecccCCccccC--CCceeEEEEccccccccchHhHhhe--eeecCCC
Q psy11730        341 EKCKFYHGDWGSLSAVI--HSKFDIILTSETIYSVANYNKLLTV--WCLFPTH  389 (496)
Q Consensus       341 ~~v~~~~~d~~~~~~~~--~~~fD~Ii~~~~l~~~~~~~~~~~~--~~l~p~~  389 (496)
                      .++..+..|........  ...+|+|++.  +.+..+.+.+++.  ..|.|++
T Consensus       122 ~~~~~i~~d~~~~~~~~~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~LkpgG  172 (227)
T d1g8aa_         122 RNIVPILGDATKPEEYRALVPKVDVIFED--VAQPTQAKILIDNAEVYLKRGG  172 (227)
T ss_dssp             TTEEEEECCTTCGGGGTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEE
T ss_pred             CCceEEEEECCCcccccccccceEEEEEE--ccccchHHHHHHHHHHhcccCC
Confidence            56777888876544322  3678888875  4455566666665  3566665

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.62  E-value=5.1e-08  Score=91.85  Aligned_cols=105  Identities=16%  Similarity=0.098  Sum_probs=78.1

Q ss_pred             HHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc
Q psy11730        279 LNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV  356 (496)
Q Consensus       279 ~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  356 (496)
                      +..+.+..+++ .++|||||||+|.++..+++..+ .+++++|+ +++++.++++....  +...++.+..+|..+..  
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~--~~~~ri~~~~~d~~~~~--  144 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA--GLADRVTVAEGDFFKPL--  144 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--TCTTTEEEEECCTTSCC--
T ss_pred             HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc--CCcceeeeeeeeccccc--
Confidence            34444455555 46899999999999999999887 58999998 77888877655332  34578999999876522  


Q ss_pred             CCCceeEEEEccccccccchH--hHhhee--eecCCC
Q psy11730        357 IHSKFDIILTSETIYSVANYN--KLLTVW--CLFPTH  389 (496)
Q Consensus       357 ~~~~fD~Ii~~~~l~~~~~~~--~~~~~~--~l~p~~  389 (496)
                       ...||+|++..++|++++.+  .++++.  .|.|++
T Consensus       145 -p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG  180 (256)
T d1qzza2         145 -PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGG  180 (256)
T ss_dssp             -SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             -cccchhhhccccccccCcHHHHHHHHHHHhhcCCcc
Confidence             35699999999999997654  445542  566665

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2e-08  Score=97.72  Aligned_cols=79  Identities=16%  Similarity=0.203  Sum_probs=59.9

Q ss_pred             CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccc--------cCCCCceEEEecccCCcccc-C
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMN--------TDNLEKCKFYHGDWGSLSAV-I  357 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~--------~~~~~~v~~~~~d~~~~~~~-~  357 (496)
                      +|.+|||+|||+|.+++.||+. ++ ++|+++|+++++++.|+++.....        .....|+++.++|+.+.... .
T Consensus        98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~  177 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK  177 (324)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred             CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccC
Confidence            5899999999999999999975 44 699999999999999987643221        23457899999998876432 2


Q ss_pred             CCceeEEEEc
Q psy11730        358 HSKFDIILTS  367 (496)
Q Consensus       358 ~~~fD~Ii~~  367 (496)
                      ...||.|+..
T Consensus       178 ~~~fD~V~LD  187 (324)
T d2b25a1         178 SLTFDAVALD  187 (324)
T ss_dssp             ---EEEEEEC
T ss_pred             CCCcceEeec
Confidence            4689999874

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.59  E-value=1.7e-08  Score=97.24  Aligned_cols=81  Identities=22%  Similarity=0.216  Sum_probs=65.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc---CCCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV---IHSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~Ii  365 (496)
                      ++.+|||++||||.+++.++..|+ +|++||.|+.+++.|+++... |.....+++|+++|+.+....   ....||+||
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~l-n~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii  209 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  209 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhh-hcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence            578999999999999999888776 799999999999999877543 333455799999998765432   147899999


Q ss_pred             Eccccc
Q psy11730        366 TSETIY  371 (496)
Q Consensus       366 ~~~~l~  371 (496)
                      ++++-.
T Consensus       210 lDPP~f  215 (309)
T d2igta1         210 TDPPKF  215 (309)
T ss_dssp             ECCCSE
T ss_pred             ECCCcc
Confidence            988844

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.59  E-value=1.2e-08  Score=99.46  Aligned_cols=81  Identities=19%  Similarity=0.139  Sum_probs=65.5

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc---cCCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA---VIHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~fD~I  364 (496)
                      .+|++|||+|||+|.+++.++ .++.+|+++|+|+.+++.++++...++   ..+++++++|+.+...   ...++||+|
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a-~g~~~V~~vD~s~~al~~a~~n~~~ng---l~~~~~i~~d~~~~~~~~~~~~~~fD~V  219 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLA-LGFREVVAVDSSAEALRRAEENARLNG---LGNVRVLEANAFDLLRRLEKEGERFDLV  219 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHH-HHEEEEEEEESCHHHHHHHHHHHHHTT---CTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHH-hcCCcEEeecchHHHHHHHHHHHHHcC---CCCcceeeccHHHHhhhhHhhhcCCCEE
Confidence            368999999999999999976 467899999999999999997765443   4689999999766432   125789999


Q ss_pred             EEcccccc
Q psy11730        365 LTSETIYS  372 (496)
Q Consensus       365 i~~~~l~~  372 (496)
                      +++++...
T Consensus       220 i~DpP~~~  227 (318)
T d1wxxa2         220 VLDPPAFA  227 (318)
T ss_dssp             EECCCCSC
T ss_pred             EEcCCccc
Confidence            99887544

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.54  E-value=3.5e-08  Score=90.99  Aligned_cols=85  Identities=13%  Similarity=0.073  Sum_probs=66.4

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc-------CCeEEEEeCCHHHHHHhcCccccccc--CCCCceEEEecccCCccccCCC
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG-------AAHVSFQDYNQEVIESLTLPNILMNT--DNLEKCKFYHGDWGSLSAVIHS  359 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~-------~~~v~giD~s~~~i~~a~~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~  359 (496)
                      ++.+|||||||||+.+..+++..       ..+|+++|.++++++.++++....+.  ....|+.+.++|..+.... .+
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~-~~  158 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-NA  158 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-GC
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccc-cc
Confidence            57899999999999999887742       14799999999999998765322211  1346899999998765443 57


Q ss_pred             ceeEEEEcccccccc
Q psy11730        360 KFDIILTSETIYSVA  374 (496)
Q Consensus       360 ~fD~Ii~~~~l~~~~  374 (496)
                      .||+|++..++.+++
T Consensus       159 ~fD~Iiv~~a~~~~p  173 (223)
T d1r18a_         159 PYNAIHVGAAAPDTP  173 (223)
T ss_dssp             SEEEEEECSCBSSCC
T ss_pred             ceeeEEEEeechhch
Confidence            899999999988775

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.50  E-value=3.9e-08  Score=95.50  Aligned_cols=82  Identities=15%  Similarity=0.079  Sum_probs=67.0

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc---CCCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV---IHSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~Ii  365 (496)
                      +|++|||++||+|.+++.++..|+.+|+++|+|+.+++.++++.. .|.....+++|+.+|+.+....   ....||+|+
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~-~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii  222 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFE-ANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  222 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHH-HTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHH-HhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence            588999999999999999888888999999999999999987653 3333456899999998654321   246899999


Q ss_pred             Eccccc
Q psy11730        366 TSETIY  371 (496)
Q Consensus       366 ~~~~l~  371 (496)
                      +++|-.
T Consensus       223 ~DPP~f  228 (317)
T d2b78a2         223 IDPPSF  228 (317)
T ss_dssp             ECCCCC
T ss_pred             EcChhh
Confidence            998843

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=8.7e-08  Score=95.59  Aligned_cols=116  Identities=14%  Similarity=0.102  Sum_probs=75.7

Q ss_pred             cchHHHHHHHHhCCCCC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc------cCCCCceE
Q psy11730        273 ECTFDLLNFIKDNVAVD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN------TDNLEKCK  344 (496)
Q Consensus       273 ~~~~~l~~~l~~~~~~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~------~~~~~~v~  344 (496)
                      +....++..+.+...++ +.+|||||||+|..++.+|+..+ ++|+|||+|+.|++.|+++.....      ......+.
T Consensus       199 El~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~  278 (406)
T d1u2za_         199 ELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE  278 (406)
T ss_dssp             CBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred             cCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence            44445555666666554 78999999999999999987654 689999999999999987754322      11122223


Q ss_pred             E-EecccCCccccC--CCceeEEEEccccccccchHhHhhee--eecCCC
Q psy11730        345 F-YHGDWGSLSAVI--HSKFDIILTSETIYSVANYNKLLTVW--CLFPTH  389 (496)
Q Consensus       345 ~-~~~d~~~~~~~~--~~~fD~Ii~~~~l~~~~~~~~~~~~~--~l~p~~  389 (496)
                      + ..++....+...  -..+|+|+++. +.|.+++...+++.  .|.|++
T Consensus       279 ~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGG  327 (406)
T d1u2za_         279 FSLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGC  327 (406)
T ss_dssp             EEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTC
T ss_pred             eeeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCc
Confidence            2 233333222110  24578888765 55777888777762  566655

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.47  E-value=2.4e-07  Score=85.83  Aligned_cols=91  Identities=10%  Similarity=0.132  Sum_probs=71.7

Q ss_pred             HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..+++.|.+...+ ++.+|||||||+|.++..+++.+ .+|++||+++.+++.++++..     ...+++++++|+.++.
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~-----~~~n~~i~~~D~l~~~   80 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLV-----DHDNFQVLNKDILQFK   80 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTT-----TCCSEEEECCCGGGCC
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhh-----cccchhhhhhhhhhcc
Confidence            3566777777664 58899999999999999999875 689999999999998876542     3568999999999876


Q ss_pred             ccCCCceeEEEEccccccc
Q psy11730        355 AVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .. ......|+++-+++-.
T Consensus        81 ~~-~~~~~~vv~NLPYnIs   98 (235)
T d1qama_          81 FP-KNQSYKIFGNIPYNIS   98 (235)
T ss_dssp             CC-SSCCCEEEEECCGGGH
T ss_pred             cc-ccccceeeeeehhhhh
Confidence            54 2334567888887554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.45  E-value=3.1e-08  Score=92.55  Aligned_cols=90  Identities=13%  Similarity=0.101  Sum_probs=71.6

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+++.|.+...+ ++..|||||||+|.++..|++.+ .+|++||+++.+++.++++.     ....+++++++|+.++..
T Consensus        16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~-----~~~~n~~ii~~D~l~~~~   89 (245)
T d1yuba_          16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKL-----KLNTRVTLIHQDILQFQF   89 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTT-----TTCSEEEECCSCCTTTTC
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhh-----hhccchhhhhhhhhcccc
Confidence            455666666654 47799999999999999999875 68999999999998877654     235689999999998876


Q ss_pred             cCCCceeEEEEccccccc
Q psy11730        356 VIHSKFDIILTSETIYSV  373 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~  373 (496)
                      . ...++.|+++.+++-.
T Consensus        90 ~-~~~~~~vv~NLPY~Is  106 (245)
T d1yuba_          90 P-NKQRYKIVGNIPYHLS  106 (245)
T ss_dssp             C-CSSEEEEEEECCSSSC
T ss_pred             c-cceeeeEeeeeehhhh
Confidence            4 4677889999886544

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.42  E-value=1.5e-07  Score=83.89  Aligned_cols=92  Identities=16%  Similarity=0.209  Sum_probs=68.0

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc--CCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV--IHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~Ii  365 (496)
                      +.+.+||||.||||.+++.++.+|+.+|++||.+..++..++++....+ .......+...|..+....  ....||+|+
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~-~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF  120 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLK-CSSEQAEVINQSSLDFLKQPQNQPHFDVVF  120 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT-CCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhc-ccccccccccccccccccccccCCcccEEE
Confidence            4688999999999999999999999999999999999998887653332 1233566666665443321  145799999


Q ss_pred             EccccccccchHhHhh
Q psy11730        366 TSETIYSVANYNKLLT  381 (496)
Q Consensus       366 ~~~~l~~~~~~~~~~~  381 (496)
                      +.+|+.. ...+.+++
T Consensus       121 lDPPY~~-~~~~~~l~  135 (183)
T d2ifta1         121 LDPPFHF-NLAEQAIS  135 (183)
T ss_dssp             ECCCSSS-CHHHHHHH
T ss_pred             echhHhh-hhHHHHHH
Confidence            9999765 33444443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=6.8e-07  Score=88.01  Aligned_cols=92  Identities=22%  Similarity=0.211  Sum_probs=70.2

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .|.+.+.+.... ++.+|||+.||+|.+++.||+. .++|+|+|.++.+++.|++++..+   +..|+.|+.++.++...
T Consensus       199 ~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n---~i~n~~~~~~~~~~~~~  274 (358)
T d1uwva2         199 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLN---GLQNVTFYHENLEEDVT  274 (358)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCTTSCCS
T ss_pred             HHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhc---ccccceeeecchhhhhh
Confidence            445555554444 4779999999999999998765 468999999999999988765443   47899999999876543


Q ss_pred             cC---CCceeEEEEcccccc
Q psy11730        356 VI---HSKFDIILTSETIYS  372 (496)
Q Consensus       356 ~~---~~~fD~Ii~~~~l~~  372 (496)
                      ..   ...+|+|+.+++=.=
T Consensus       275 ~~~~~~~~~d~vilDPPR~G  294 (358)
T d1uwva2         275 KQPWAKNGFDKVLLDPARAG  294 (358)
T ss_dssp             SSGGGTTCCSEEEECCCTTC
T ss_pred             hhhhhhccCceEEeCCCCcc
Confidence            21   367999999887443

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=4.8e-06  Score=75.18  Aligned_cols=77  Identities=19%  Similarity=0.261  Sum_probs=63.8

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      +.+++|+|||||.|..|+.+|...+ .+|+.+|.+..-+.+++.-....   +..|+++++.++++...  ..+||+|+|
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~~~~--~~~fD~V~s  138 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL---KLENIEPVQSRVEEFPS--EPPFDGVIS  138 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---TCSSEEEEECCTTTSCC--CSCEEEEEC
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc---CCcceeeeccchhhhcc--ccccceehh
Confidence            4567999999999999999998877 79999999999988877654333   36789999999998754  568999998


Q ss_pred             ccc
Q psy11730        367 SET  369 (496)
Q Consensus       367 ~~~  369 (496)
                      -.+
T Consensus       139 RA~  141 (207)
T d1jsxa_         139 RAF  141 (207)
T ss_dssp             SCS
T ss_pred             hhh
Confidence            544

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.8e-06  Score=78.61  Aligned_cols=92  Identities=21%  Similarity=0.151  Sum_probs=71.4

Q ss_pred             HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcc
Q psy11730        276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLS  354 (496)
Q Consensus       276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  354 (496)
                      ..+++.|.+...+ ++..|||||+|+|.++..|++.+ ++|++||+++.++..+++....  .....+++++.+|+.+..
T Consensus         7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~--~~~~~~~~~i~~D~l~~~   83 (278)
T d1zq9a1           7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQG--TPVASKLQVLVGDVLKTD   83 (278)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTT--STTGGGEEEEESCTTTSC
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhh--hccccchhhhHHHHhhhh
Confidence            3456666666655 47899999999999999999887 5899999999999988765321  123468999999998765


Q ss_pred             ccCCCceeEEEEccccccc
Q psy11730        355 AVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       355 ~~~~~~fD~Ii~~~~l~~~  373 (496)
                      .   ..++.|+++.+++-.
T Consensus        84 ~---~~~~~vV~NLPY~Is   99 (278)
T d1zq9a1          84 L---PFFDTCVANLPYQIS   99 (278)
T ss_dssp             C---CCCSEEEEECCGGGH
T ss_pred             h---hhhhhhhcchHHHHH
Confidence            3   346789999887654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=3.1e-06  Score=75.60  Aligned_cols=89  Identities=15%  Similarity=0.103  Sum_probs=66.9

Q ss_pred             HHHHHHhCC-CCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        278 LLNFIKDNV-AVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       278 l~~~l~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      |++.+.+.. ..++..|||++||+|.++..+++..+ .+|+|+|.+++|++.++++...    ...++.++++++.++..
T Consensus        11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~----~~~r~~~~~~~f~~~~~   86 (192)
T d1m6ya2          11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE----FSDRVSLFKVSYREADF   86 (192)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG----GTTTEEEEECCGGGHHH
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc----ccccccchhHHHhhHHH
Confidence            333333333 34688999999999999999988654 7899999999999999876533    24579999998877543


Q ss_pred             c----CCCceeEEEEcccc
Q psy11730        356 V----IHSKFDIILTSETI  370 (496)
Q Consensus       356 ~----~~~~fD~Ii~~~~l  370 (496)
                      .    ..++||.|+...-+
T Consensus        87 ~~~~~~~~~vdgIl~DlGv  105 (192)
T d1m6ya2          87 LLKTLGIEKVDGILMDLGV  105 (192)
T ss_dssp             HHHHTTCSCEEEEEEECSC
T ss_pred             HHHHcCCCCcceeeeccch
Confidence            2    24789999986444

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=3.3e-06  Score=76.88  Aligned_cols=79  Identities=13%  Similarity=0.057  Sum_probs=62.1

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-----CCCce
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-----IHSKF  361 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~f  361 (496)
                      +.++|||||||+|..++.+|+..  ..+|+++|.++++++.|+.+....  +...+++++.+|..+....     ..+.|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~--gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA--GLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHc--CCCccceeeeccccccccchhhccccccc
Confidence            57899999999999999998753  379999999999999988665332  3456899999997765322     13679


Q ss_pred             eEEEEccc
Q psy11730        362 DIILTSET  369 (496)
Q Consensus       362 D~Ii~~~~  369 (496)
                      |+|+....
T Consensus       134 D~ifiD~~  141 (214)
T d2cl5a1         134 DMVFLDHW  141 (214)
T ss_dssp             EEEEECSC
T ss_pred             ceeeeccc
Confidence            99998743

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=3.8e-06  Score=78.32  Aligned_cols=93  Identities=9%  Similarity=0.016  Sum_probs=69.3

Q ss_pred             HHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        277 DLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       277 ~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      .+++.|.+...+ +++.|||||||+|.++..|++.+ ++|++||+++.+++.++.+..     ...+++++.+|+.++..
T Consensus         8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~-----~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_           8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPF-----LGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTT-----TGGGEEEECSCGGGCCH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhh-----hccchhHHhhhhhhhcc
Confidence            445555555544 47899999999999999998775 689999999999999876532     34689999999987654


Q ss_pred             cC----CCceeEEEEccccccccc
Q psy11730        356 VI----HSKFDIILTSETIYSVAN  375 (496)
Q Consensus       356 ~~----~~~fD~Ii~~~~l~~~~~  375 (496)
                      ..    .+.--.|+++.+++-...
T Consensus        82 ~~~~~~~~~~~~vvgNlPY~Iss~  105 (252)
T d1qyra_          82 GELAEKMGQPLRVFGNLPYNISTP  105 (252)
T ss_dssp             HHHHHHHTSCEEEEEECCTTTHHH
T ss_pred             cccccccCCCeEEEecchHHHHHH
Confidence            21    123347788888776654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.84  E-value=9.2e-06  Score=73.60  Aligned_cols=83  Identities=13%  Similarity=0.095  Sum_probs=60.0

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSL  353 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~  353 (496)
                      .+++++.+... .++.+|||.|||+|.+...+.+...  ..++|+|+++.++..++            ...++++|....
T Consensus         6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~------------~~~~~~~~~~~~   73 (223)
T d2ih2a1           6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP------------WAEGILADFLLW   73 (223)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT------------TEEEEESCGGGC
T ss_pred             HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc------------cceeeeeehhcc
Confidence            45566665554 3578999999999999888776433  67999999987654433            335567776654


Q ss_pred             cccCCCceeEEEEccccccc
Q psy11730        354 SAVIHSKFDIILTSETIYSV  373 (496)
Q Consensus       354 ~~~~~~~fD~Ii~~~~l~~~  373 (496)
                      ..  ...||+|++++++...
T Consensus        74 ~~--~~~fd~ii~npP~~~~   91 (223)
T d2ih2a1          74 EP--GEAFDLILGNPPYGIV   91 (223)
T ss_dssp             CC--SSCEEEEEECCCCCCB
T ss_pred             cc--ccccceecccCccccc
Confidence            43  5789999999997554

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.1e-05  Score=73.55  Aligned_cols=79  Identities=13%  Similarity=-0.014  Sum_probs=62.3

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc-----CCCce
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV-----IHSKF  361 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~f  361 (496)
                      +.++|||||||+|..++.+|+.-+  .+|+.+|.+++..+.|++.....  +...++++..+|+.+....     ..+.|
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a--g~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--EAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT--TCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc--CccceEEEEEeehhhcchhhhhhcccCCc
Confidence            678999999999999999987543  69999999999999988765433  3467899999997654321     14689


Q ss_pred             eEEEEccc
Q psy11730        362 DIILTSET  369 (496)
Q Consensus       362 D~Ii~~~~  369 (496)
                      |+|+...-
T Consensus       137 D~ifiD~d  144 (219)
T d2avda1         137 DVAVVDAD  144 (219)
T ss_dssp             EEEEECSC
T ss_pred             cEEEEeCC
Confidence            99999643

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.77  E-value=1.5e-05  Score=71.22  Aligned_cols=100  Identities=14%  Similarity=0.075  Sum_probs=62.1

Q ss_pred             CCeEEEecCcCCHH----HHHHHHccC-----CeEEEEeCCHHHHHHhcCcccccc----------------cCC-----
Q psy11730        290 KLSVLDVGCGAGLL----GLYTLMNGA-----AHVSFQDYNQEVIESLTLPNILMN----------------TDN-----  339 (496)
Q Consensus       290 ~~~VLDlGcGtG~~----~~~la~~~~-----~~v~giD~s~~~i~~a~~~~~~~~----------------~~~-----  339 (496)
                      .-+|+++|||||.-    ++.+.....     -+|+|+|+|+.+++.|+.-.-...                ...     
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~  104 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  104 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence            34899999999984    333333211     369999999999998874321110                000     


Q ss_pred             -------CCceEEEecccCCccccCCCceeEEEEccccccccch--HhHhhe--eeecCCC
Q psy11730        340 -------LEKCKFYHGDWGSLSAVIHSKFDIILTSETIYSVANY--NKLLTV--WCLFPTH  389 (496)
Q Consensus       340 -------~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~~~~~--~~~~~~--~~l~p~~  389 (496)
                             ...+.+...+.........+.||+|+|..++.+++..  ..+++.  ..|.|+|
T Consensus       105 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG  165 (193)
T d1af7a2         105 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDG  165 (193)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEE
T ss_pred             eehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCc
Confidence                   0134455555444333335789999999999999654  455654  2566665

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.74  E-value=2e-05  Score=76.15  Aligned_cols=92  Identities=17%  Similarity=0.184  Sum_probs=63.6

Q ss_pred             HHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHc----cC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecc
Q psy11730        277 DLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMN----GA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGD  349 (496)
Q Consensus       277 ~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~----~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d  349 (496)
                      .|+..+..... ..+.+|||.|||+|.+...+...    ..  .+++|+|+++.++..|+.+....    ..+..+.++|
T Consensus       104 ~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~----~~~~~~~~~d  179 (328)
T d2f8la1         104 IVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ----RQKMTLLHQD  179 (328)
T ss_dssp             HHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH----TCCCEEEESC
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh----hhhhhhhccc
Confidence            34555444333 34668999999999999887642    22  47999999999999887654322    2345666666


Q ss_pred             cCCccccCCCceeEEEEcccccccc
Q psy11730        350 WGSLSAVIHSKFDIILTSETIYSVA  374 (496)
Q Consensus       350 ~~~~~~~~~~~fD~Ii~~~~l~~~~  374 (496)
                      ......  ...||+|++++|+....
T Consensus       180 ~~~~~~--~~~fD~vi~NPPy~~~~  202 (328)
T d2f8la1         180 GLANLL--VDPVDVVISDLPVGYYP  202 (328)
T ss_dssp             TTSCCC--CCCEEEEEEECCCSEES
T ss_pred             cccccc--cccccccccCCCCCCCc
Confidence            544332  57899999999986543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.73  E-value=3.4e-05  Score=71.35  Aligned_cols=85  Identities=18%  Similarity=0.169  Sum_probs=65.0

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      ..+|||||||+|.++..++++.+ .+++..|+ ++.++.+.         ...+++++.+|+.+.    ...+|++++..
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---------~~~rv~~~~gD~f~~----~p~aD~~~l~~  146 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS---------GSNNLTYVGGDMFTS----IPNADAVLLKY  146 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC---------CBTTEEEEECCTTTC----CCCCSEEEEES
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc---------ccCceEEEecCcccC----CCCCcEEEEEe
Confidence            46899999999999999999887 68999998 45555432         346899999998753    23689999999


Q ss_pred             ccccccchHh--Hhhee--eecCC
Q psy11730        369 TIYSVANYNK--LLTVW--CLFPT  388 (496)
Q Consensus       369 ~l~~~~~~~~--~~~~~--~l~p~  388 (496)
                      ++|++++.+.  +++..  .|.|+
T Consensus       147 vLHdw~d~~~~~iL~~~~~al~pg  170 (244)
T d1fp2a2         147 ILHNWTDKDCLRILKKCKEAVTND  170 (244)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHSGG
T ss_pred             ecccCChHHHHHHHHHHHHHcCcc
Confidence            9999987754  44432  34454

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.68  E-value=9.7e-05  Score=68.19  Aligned_cols=97  Identities=16%  Similarity=0.121  Sum_probs=68.7

Q ss_pred             HHHHHhCCC-CC-CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc
Q psy11730        279 LNFIKDNVA-VD-KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       279 ~~~l~~~~~-~~-~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  355 (496)
                      +..+.+..+ .. .++|||||||+|.++..++++.+ .+++..|+. +.++.+.         ...+++++.+|+.+.  
T Consensus        69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~~---------~~~ri~~~~gd~~~~--  136 (244)
T d1fp1d2          69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIENAP---------PLSGIEHVGGDMFAS--  136 (244)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTCC---------CCTTEEEEECCTTTC--
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhhccC---------CCCCeEEecCCcccc--
Confidence            344444443 44 46999999999999999999888 689999984 4454322         357899999997642  


Q ss_pred             cCCCceeEEEEccccccccchHh--Hhhee--eecCCC
Q psy11730        356 VIHSKFDIILTSETIYSVANYNK--LLTVW--CLFPTH  389 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~~~--~~~~~--~l~p~~  389 (496)
                        ....|+|++..++|++++.+.  +++..  .|-|++
T Consensus       137 --~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg  172 (244)
T d1fp1d2         137 --VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNG  172 (244)
T ss_dssp             --CCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             --cccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCc
Confidence              235699999999999977554  44432  445544

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.65  E-value=2.1e-05  Score=72.00  Aligned_cols=78  Identities=18%  Similarity=0.136  Sum_probs=62.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC------CCc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI------HSK  360 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~  360 (496)
                      +.++|||||||+|..++.+|+.-+  ++|+.+|.+++.++.|++.....  +...+++++.+++.+.....      .+.
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~--g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA--GVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh--ccccceeeeehHHHHHHHHHHhccccCCc
Confidence            678999999999999999997533  79999999999999988776443  34568999999987654321      468


Q ss_pred             eeEEEEcc
Q psy11730        361 FDIILTSE  368 (496)
Q Consensus       361 fD~Ii~~~  368 (496)
                      ||+|+...
T Consensus       137 fD~iFiDa  144 (227)
T d1susa1         137 YDFIFVDA  144 (227)
T ss_dssp             BSEEEECS
T ss_pred             eeEEEecc
Confidence            99999953

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.43  E-value=7.8e-05  Score=70.13  Aligned_cols=81  Identities=23%  Similarity=0.206  Sum_probs=64.4

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccc-------cCCCCceEEEecccCCccccCCCc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMN-------TDNLEKCKFYHGDWGSLSAVIHSK  360 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~-------~~~~~~v~~~~~d~~~~~~~~~~~  360 (496)
                      .+.++||-||+|.|..+..+++....+|+.+|+++++++.|++.....+       ....++++++.+|+...... .++
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cCC
Confidence            4678999999999999999888777899999999999999886432221       12467899999998766543 578


Q ss_pred             eeEEEEccc
Q psy11730        361 FDIILTSET  369 (496)
Q Consensus       361 fD~Ii~~~~  369 (496)
                      ||+|++...
T Consensus       150 yDvIi~D~~  158 (276)
T d1mjfa_         150 FDVIIADST  158 (276)
T ss_dssp             EEEEEEECC
T ss_pred             CCEEEEeCC
Confidence            999998543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.42  E-value=5.8e-05  Score=72.28  Aligned_cols=81  Identities=15%  Similarity=0.117  Sum_probs=65.5

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc--cCCCCceEEEecccCCccccCCCceeEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN--TDNLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      ...++||.||.|.|..+..+++... .+|+++|+++++++.|++.....+  ....++++++.+|+.+........||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            3578999999999999999887754 799999999999999987653322  2356799999999888765546789999


Q ss_pred             EEcc
Q psy11730        365 LTSE  368 (496)
Q Consensus       365 i~~~  368 (496)
                      ++..
T Consensus       156 i~D~  159 (312)
T d1uira_         156 IIDL  159 (312)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9744

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.36  E-value=0.00011  Score=67.29  Aligned_cols=76  Identities=24%  Similarity=0.294  Sum_probs=60.7

Q ss_pred             CCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--CCceeEEE
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--HSKFDIIL  365 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~Ii  365 (496)
                      .+.+|+|||+|.|..|+.+|-..+ .+|+.+|.+..-+.+.+.-....   ...|+.+++..++++....  .+.||+|+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L---~L~n~~i~~~R~E~~~~~~~~~~~~D~v~  146 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL---QLENTTFCHDRAETFGQRKDVRESYDIVT  146 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH---TCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh---CCCCcEEEeehhhhccccccccccceEEE
Confidence            367999999999999999997555 79999999999988876543333   3678999999988765421  36899999


Q ss_pred             Ec
Q psy11730        366 TS  367 (496)
Q Consensus       366 ~~  367 (496)
                      |-
T Consensus       147 sR  148 (239)
T d1xdza_         147 AR  148 (239)
T ss_dssp             EE
T ss_pred             Eh
Confidence            95

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.20  E-value=0.00014  Score=67.04  Aligned_cols=82  Identities=16%  Similarity=0.075  Sum_probs=61.7

Q ss_pred             CeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccC------CCCceEEEecccCCccccCCCceeEE
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTD------NLEKCKFYHGDWGSLSAVIHSKFDII  364 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~fD~I  364 (496)
                      .+|||+-||.|..++.+|..| .+|+++|-++.+...++.........      ...+++++++|..+........||+|
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI  168 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CEEEECCCcccHHHHHHHhCC-CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence            489999999999999999887 57999999998766554332111111      13489999999776655446789999


Q ss_pred             EEccccccc
Q psy11730        365 LTSETIYSV  373 (496)
Q Consensus       365 i~~~~l~~~  373 (496)
                      +..+++.+-
T Consensus       169 YlDPMFp~~  177 (250)
T d2oyra1         169 YLDPMFPHK  177 (250)
T ss_dssp             EECCCCCCC
T ss_pred             EECCCCccc
Confidence            999998654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.17  E-value=0.00026  Score=69.24  Aligned_cols=93  Identities=19%  Similarity=0.162  Sum_probs=67.5

Q ss_pred             CCCeEEEecCcCCHHHHHHHH-ccCCeEEEEeCCHHHHHHhcCccccccc------------CCCCceEEEecccCCccc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLM-NGAAHVSFQDYNQEVIESLTLPNILMNT------------DNLEKCKFYHGDWGSLSA  355 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~-~~~~~v~giD~s~~~i~~a~~~~~~~~~------------~~~~~v~~~~~d~~~~~~  355 (496)
                      ++.+|||..||||..++..+. .+..+|+++|+|+.+++.++++...++.            ....++.+.+.|+..+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            578999999999999997655 6668999999999999998876543321            123457777788766554


Q ss_pred             cCCCceeEEEEccccccccchHhHhh
Q psy11730        356 VIHSKFDIILTSETIYSVANYNKLLT  381 (496)
Q Consensus       356 ~~~~~fD~Ii~~~~l~~~~~~~~~~~  381 (496)
                      .....||+|...+.-.-.+-++..++
T Consensus       125 ~~~~~fDvIDiDPfGs~~pfldsAi~  150 (375)
T d2dula1         125 ERHRYFHFIDLDPFGSPMEFLDTALR  150 (375)
T ss_dssp             HSTTCEEEEEECCSSCCHHHHHHHHH
T ss_pred             hhcCcCCcccCCCCCCcHHHHHHHHH
Confidence            43568999999874444444455554

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00022  Score=67.49  Aligned_cols=81  Identities=15%  Similarity=0.106  Sum_probs=65.6

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      ...++||-||.|.|..+..+++... .+|+++|+++++++.+++...... ....++++++.+|+.+......+.||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            3578999999999999999888654 789999999999999987543322 23468999999998877665567899999


Q ss_pred             Ecc
Q psy11730        366 TSE  368 (496)
Q Consensus       366 ~~~  368 (496)
                      +..
T Consensus       168 ~D~  170 (295)
T d1inla_         168 IDS  170 (295)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            854

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00073  Score=59.06  Aligned_cols=88  Identities=17%  Similarity=0.261  Sum_probs=64.3

Q ss_pred             ecchHHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHc-cC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEec
Q psy11730        272 WECTFDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMN-GA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHG  348 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~-~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~  348 (496)
                      ..+++.|.+...+..-+ ++.+||||||+.|.++..+++. +. ..|+|+|+.+.              ....++.++.+
T Consensus         4 sRaafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~--------------~~i~~~~~~~~   69 (180)
T d1ej0a_           4 SRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM--------------DPIVGVDFLQG   69 (180)
T ss_dssp             CHHHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC--------------CCCTTEEEEES
T ss_pred             hHHHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc--------------cccCCceEeec
Confidence            44567788877765544 4779999999999999998764 33 68999997651              13568889999


Q ss_pred             ccCCcccc-------CCCceeEEEEccccccc
Q psy11730        349 DWGSLSAV-------IHSKFDIILTSETIYSV  373 (496)
Q Consensus       349 d~~~~~~~-------~~~~fD~Ii~~~~l~~~  373 (496)
                      |..+....       ....+|+|+|..+....
T Consensus        70 d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~s  101 (180)
T d1ej0a_          70 DFRDELVMKALLERVGDSKVQVVMSDMAPNMS  101 (180)
T ss_dssp             CTTSHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred             ccccchhhhhhhhhccCcceeEEEecccchhc
Confidence            98764321       14579999998776554

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.93  E-value=0.00055  Score=59.95  Aligned_cols=74  Identities=18%  Similarity=0.072  Sum_probs=59.8

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCcccc----CCCcee
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAV----IHSKFD  362 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~~fD  362 (496)
                      ..+|..++|..||.|.++..+++.+ .+|+|+|..++++..+++..       ..++.+++.++.++...    ..+.+|
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~-------~~~~~~~~~~f~~~~~~l~~~~~~~vd   87 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLH-------LPGLTVVQGNFRHLKRHLAALGVERVD   87 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTC-------CTTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhcc-------ccceeEeehHHHHHHHHHHHcCCCccC
Confidence            3468899999999999999998875 58999999999999887542       46889999887776532    136799


Q ss_pred             EEEEcc
Q psy11730        363 IILTSE  368 (496)
Q Consensus       363 ~Ii~~~  368 (496)
                      .|++..
T Consensus        88 gIl~DL   93 (182)
T d1wg8a2          88 GILADL   93 (182)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999854

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.91  E-value=0.00053  Score=62.94  Aligned_cols=87  Identities=17%  Similarity=0.053  Sum_probs=62.1

Q ss_pred             CCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEcc
Q psy11730        290 KLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSE  368 (496)
Q Consensus       290 ~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~  368 (496)
                      .++|||||||+|.++..++++.+ .++++.|+.+- ++.+         ....++.+..+|+.+..    ...|+++...
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~---------~~~~r~~~~~~d~~~~~----P~ad~~~l~~  147 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA---------PSYPGVEHVGGDMFVSI----PKADAVFMKW  147 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC---------CCCTTEEEEECCTTTCC----CCCSCEECSS
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc---------ccCCceEEecccccccC----CCcceEEEEE
Confidence            46899999999999999999888 68999998653 3322         23468999999986532    2357788888


Q ss_pred             ccccccchHh--Hhhee--eecCCCC
Q psy11730        369 TIYSVANYNK--LLTVW--CLFPTHT  390 (496)
Q Consensus       369 ~l~~~~~~~~--~~~~~--~l~p~~~  390 (496)
                      ++|..++.+.  ++++.  .+.|++.
T Consensus       148 vlh~~~d~~~~~iL~~~~~al~pgg~  173 (243)
T d1kyza2         148 ICHDWSDEHCLKFLKNCYEALPDNGK  173 (243)
T ss_dssp             SSTTSCHHHHHHHHHHHHHHCCSSSC
T ss_pred             EeecCCHHHHHHHHHHHHHhcCCCce
Confidence            9988865433  44442  4555543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=0.00086  Score=62.63  Aligned_cols=81  Identities=19%  Similarity=0.094  Sum_probs=65.5

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      ...++||-||-|.|..+..+++.. ..+|+.+|+++++++.|++...... ....++++++.+|..........+||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            457899999999999999988864 4899999999999999987653321 23567999999998876655467899999


Q ss_pred             Ecc
Q psy11730        366 TSE  368 (496)
Q Consensus       366 ~~~  368 (496)
                      ...
T Consensus       154 ~D~  156 (274)
T d1iy9a_         154 VDS  156 (274)
T ss_dssp             ESC
T ss_pred             EcC
Confidence            864

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.77  E-value=0.00085  Score=66.79  Aligned_cols=94  Identities=16%  Similarity=0.100  Sum_probs=64.8

Q ss_pred             HHHHHHHHhCCCC-CCCeEEEecCcCCHHHHHHHHccC--------------CeEEEEeCCHHHHHHhcCcccccccCCC
Q psy11730        276 FDLLNFIKDNVAV-DKLSVLDVGCGAGLLGLYTLMNGA--------------AHVSFQDYNQEVIESLTLPNILMNTDNL  340 (496)
Q Consensus       276 ~~l~~~l~~~~~~-~~~~VLDlGcGtG~~~~~la~~~~--------------~~v~giD~s~~~i~~a~~~~~~~~~~~~  340 (496)
                      ..+++++.+.... .+.+|+|-+||+|.+...+.+...              ..++|+|+++.+...|+.+....+ ...
T Consensus       148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g-~~~  226 (425)
T d2okca1         148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG-IGT  226 (425)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT-CCS
T ss_pred             hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC-Ccc
Confidence            3455555555443 478999999999999998765321              249999999999988876543222 223


Q ss_pred             CceEEEecccCCccccCCCceeEEEEcccccc
Q psy11730        341 EKCKFYHGDWGSLSAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       341 ~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~  372 (496)
                      .+..+...|......  ...||+|++++|+..
T Consensus       227 ~~~~i~~~d~l~~~~--~~~fD~Ii~NPPfg~  256 (425)
T d2okca1         227 DRSPIVCEDSLEKEP--STLVDVILANPPFGT  256 (425)
T ss_dssp             SCCSEEECCTTTSCC--SSCEEEEEECCCSSC
T ss_pred             ccceeecCchhhhhc--ccccceEEecCCCCC
Confidence            345566676554332  578999999999954

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.001  Score=62.49  Aligned_cols=81  Identities=20%  Similarity=0.112  Sum_probs=65.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCccccc-ccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILM-NTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      ...++||-||-|.|..+..+.+.. ..+|+.+|+++++++.|++..... .....++++++.+|+........++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            467899999999999999988764 589999999999999998765321 123468999999998776654467899999


Q ss_pred             Ecc
Q psy11730        366 TSE  368 (496)
Q Consensus       366 ~~~  368 (496)
                      +..
T Consensus       157 ~D~  159 (285)
T d2o07a1         157 TDS  159 (285)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            853

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.76  E-value=0.00084  Score=63.66  Aligned_cols=82  Identities=22%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      ...++||-||-|.|..+..+++... .+|+.+|+++++++.+++...... ....++++++.+|..+........||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            3578999999999999999888665 799999999999999987643322 23468999999998876655467899999


Q ss_pred             Eccc
Q psy11730        366 TSET  369 (496)
Q Consensus       366 ~~~~  369 (496)
                      +..+
T Consensus       185 ~D~~  188 (312)
T d2b2ca1         185 TDSS  188 (312)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            8643

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.33  E-value=0.0036  Score=58.73  Aligned_cols=83  Identities=11%  Similarity=0.101  Sum_probs=64.6

Q ss_pred             CCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccc-cCCCCceEEEecccCCccccC-CCceeE
Q psy11730        287 AVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMN-TDNLEKCKFYHGDWGSLSAVI-HSKFDI  363 (496)
Q Consensus       287 ~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~-~~~fD~  363 (496)
                      ....++||=||-|.|..+..+++... .+|+++|+++++++.+++.....+ ....++++++.+|..+..... .+.||+
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            34578999999999999999888755 789999999999999987643221 235789999999977655332 468999


Q ss_pred             EEEccc
Q psy11730        364 ILTSET  369 (496)
Q Consensus       364 Ii~~~~  369 (496)
                      |+....
T Consensus       158 Ii~D~~  163 (290)
T d1xj5a_         158 VIVDSS  163 (290)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            998443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0026  Score=60.71  Aligned_cols=73  Identities=16%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             hHHHHHHHHhCCC-------CCCCeEEEecCcCCHHHHHHHHcc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEE
Q psy11730        275 TFDLLNFIKDNVA-------VDKLSVLDVGCGAGLLGLYTLMNG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFY  346 (496)
Q Consensus       275 ~~~l~~~l~~~~~-------~~~~~VLDlGcGtG~~~~~la~~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~  346 (496)
                      ...+++.|.+...       ..+..|||||+|.|.++..+...+ +.+|+++|+++.+++..+...      ...++.++
T Consensus        22 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~------~~~~~~ii   95 (322)
T d1i4wa_          22 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF------EGSPLQIL   95 (322)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT------TTSSCEEE
T ss_pred             CHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc------cCCCcEEE
Confidence            3445555544432       346689999999999999998874 579999999999999877543      24678999


Q ss_pred             ecccCCc
Q psy11730        347 HGDWGSL  353 (496)
Q Consensus       347 ~~d~~~~  353 (496)
                      ++|+...
T Consensus        96 ~~D~l~~  102 (322)
T d1i4wa_          96 KRDPYDW  102 (322)
T ss_dssp             CSCTTCH
T ss_pred             eCchhhc
Confidence            9987654

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0061  Score=57.18  Aligned_cols=127  Identities=13%  Similarity=0.061  Sum_probs=85.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHc--cCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--CCceeE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMN--GAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--HSKFDI  363 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~--~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~  363 (496)
                      .+|.+|||++||.|.-+..++..  +...|+++|+++.-+..++.+....   +..++.+...|...+....  .+.||.
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~---g~~~~~~~~~d~~~~~~~~~~~~~fD~  169 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA---GVSCCELAEEDFLAVSPSDPRYHEVHY  169 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc---CccceeeeehhhhhhcccccccceeeE
Confidence            46889999999999988888764  3478999999999988877665433   4678899998877664432  367999


Q ss_pred             EEEccccccccch-----------------HhHh-------heeeecCCCCCcccEEEeeccCCcccccccchhhHhcCC
Q psy11730        364 ILTSETIYSVANY-----------------NKLL-------TVWCLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPR  419 (496)
Q Consensus       364 Ii~~~~l~~~~~~-----------------~~~~-------~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (496)
                      |++..+.....-.                 ..+.       .....++.++  .++|..-.....+....+.+|...++.
T Consensus       170 VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~l~~gG--~lvYsTCSl~~~ENe~vV~~~L~~~~~  247 (293)
T d2b9ea1         170 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ--RLVYSTCSLCQEENEDVVRDALQQNPG  247 (293)
T ss_dssp             EEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTTCC--EEEEEESCCCGGGTHHHHHHHHTTSTT
T ss_pred             EeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhhccccc--EEEEeeccCChhHhHHHHHHHHHhCCC
Confidence            9987664433110                 1111       1111234333  377777766666777888888776654

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.84  E-value=0.008  Score=56.39  Aligned_cols=74  Identities=20%  Similarity=0.249  Sum_probs=60.0

Q ss_pred             eEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEccccc
Q psy11730        292 SVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTSETIY  371 (496)
Q Consensus       292 ~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~  371 (496)
                      +||||.||.|.+++-+-+.|...+.++|+++.+++..+.+.         +-.++.+|+.++....-...|++++.++..
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~---------~~~~~~~Di~~~~~~~~~~~dll~~g~PCq   72 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPPCQ   72 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC---------CSEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC---------CCCCccCChhhCCHhHcccccEEeeccccc
Confidence            69999999999999988889888889999999988766543         234577898887654446799999998888


Q ss_pred             ccc
Q psy11730        372 SVA  374 (496)
Q Consensus       372 ~~~  374 (496)
                      .++
T Consensus        73 ~fS   75 (324)
T d1dcta_          73 SWS   75 (324)
T ss_dssp             TTS
T ss_pred             ccc
Confidence            773

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.0062  Score=61.98  Aligned_cols=97  Identities=11%  Similarity=-0.059  Sum_probs=59.4

Q ss_pred             HHHHHHHHhCCC-CCCCeEEEecCcCCHHHHHHHHcc-------------------CCeEEEEeCCHHHHHHhcCccccc
Q psy11730        276 FDLLNFIKDNVA-VDKLSVLDVGCGAGLLGLYTLMNG-------------------AAHVSFQDYNQEVIESLTLPNILM  335 (496)
Q Consensus       276 ~~l~~~l~~~~~-~~~~~VLDlGcGtG~~~~~la~~~-------------------~~~v~giD~s~~~i~~a~~~~~~~  335 (496)
                      ..+++++.+... ..+.+|+|-.||+|.+...+.+.-                   ...++|+|+++.+...|+-+....
T Consensus       150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~  229 (524)
T d2ar0a1         150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  229 (524)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence            345555555543 347799999999999998865521                   125899999999998877544322


Q ss_pred             ccCC--CCceEEEecccCCccccCCCceeEEEEcccccc
Q psy11730        336 NTDN--LEKCKFYHGDWGSLSAVIHSKFDIILTSETIYS  372 (496)
Q Consensus       336 ~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Ii~~~~l~~  372 (496)
                      +...  ...-.+...+...........||+|++++|+..
T Consensus       230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~  268 (524)
T d2ar0a1         230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS  268 (524)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTT
T ss_pred             cccccccccchhhhhhhhhhcccccccceeEEecCCccc
Confidence            1100  011122333332222222467999999999853

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.50  E-value=0.0095  Score=56.24  Aligned_cols=77  Identities=17%  Similarity=0.122  Sum_probs=60.3

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEEc
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILTS  367 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~~  367 (496)
                      ..+-+||||.||.|.+++.|-+.|...|.++|+++.+++..+.+...          ..++|+.++.......+|+|+..
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~----------~~~~Di~~~~~~~~~~~Dll~gg   78 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE----------KPEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC----------CCBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC----------CCcCchhcCchhhcceeeeeecc
Confidence            45679999999999999999889988889999999999887655421          13467776655434579999998


Q ss_pred             ccccccc
Q psy11730        368 ETIYSVA  374 (496)
Q Consensus       368 ~~l~~~~  374 (496)
                      ++...++
T Consensus        79 pPCq~fS   85 (327)
T d2c7pa1          79 FPCQAFS   85 (327)
T ss_dssp             CCCTTTC
T ss_pred             cccchhh
Confidence            8877763

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.43  E-value=0.0079  Score=56.27  Aligned_cols=60  Identities=13%  Similarity=0.065  Sum_probs=49.8

Q ss_pred             chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcccc
Q psy11730        274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPNIL  334 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~~~  334 (496)
                      -...|++.|......+|..|||..||+|..+.++.+.| ...+|+|++++.++.|+++..+
T Consensus       235 kP~~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         235 FPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSC
T ss_pred             CchHHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHHHh
Confidence            35577777777666689999999999999999955555 6899999999999999888643

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=95.28  E-value=0.012  Score=53.09  Aligned_cols=74  Identities=14%  Similarity=0.168  Sum_probs=50.9

Q ss_pred             CCCCeEEEecCcCCHHHHHHHH----cc-CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccc---cCCC
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLM----NG-AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSA---VIHS  359 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~----~~-~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~  359 (496)
                      +++++|||||++.|..++.++.    .+ .++|+|+|+.+.......        ....+++++.+|..+...   ....
T Consensus        79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~--------~~~~~I~~i~gDs~~~~~~~~l~~~  150 (232)
T d2bm8a1          79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA--------SDMENITLHQGDCSDLTTFEHLREM  150 (232)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG--------GGCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh--------ccccceeeeecccccHHHHHHHHhc
Confidence            3688999999999988877664    23 378999999875432211        235789999998654332   1234


Q ss_pred             ceeEEEEccc
Q psy11730        360 KFDIILTSET  369 (496)
Q Consensus       360 ~fD~Ii~~~~  369 (496)
                      .+|+|+....
T Consensus       151 ~~dlIfID~~  160 (232)
T d2bm8a1         151 AHPLIFIDNA  160 (232)
T ss_dssp             CSSEEEEESS
T ss_pred             CCCEEEEcCC
Confidence            6888887654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.28  E-value=0.028  Score=50.69  Aligned_cols=50  Identities=22%  Similarity=0.224  Sum_probs=38.0

Q ss_pred             ecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCC
Q psy11730        272 WECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYN  321 (496)
Q Consensus       272 ~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s  321 (496)
                      ..+++.|.+......-.++.+|+|||||.|.++..++.... ..|.|+++-
T Consensus        49 SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          49 SRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             STHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             chHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            45677777766665444566999999999999999887754 567888774

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.98  E-value=0.024  Score=53.39  Aligned_cols=124  Identities=14%  Similarity=0.097  Sum_probs=84.0

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC--CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA--AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIIL  365 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii  365 (496)
                      .+|.+|||++||.|.=+..++....  ..++++|.++.-+..++.+....   ...++.+...|...+... ...||.|+
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~---~~~~i~~~~~d~~~~~~~-~~~fD~IL  190 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL---GVLNVILFHSSSLHIGEL-NVEFDKIL  190 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH---TCCSEEEESSCGGGGGGG-CCCEEEEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH---Hhhccccccccccccccc-cccccEEE
Confidence            4688999999999998888876433  68999999999998877654333   356777777776665443 67899999


Q ss_pred             Ecccccccc---------------chHhHhh-------e-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcC
Q psy11730        366 TSETIYSVA---------------NYNKLLT-------V-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYP  418 (496)
Q Consensus       366 ~~~~l~~~~---------------~~~~~~~-------~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (496)
                      ...+.....               +...+.+       . + .+.|+|.   ++|..-.....++...+.+|...++
T Consensus       191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~---lVYsTCSl~~eENE~VV~~~L~~~~  264 (313)
T d1ixka_         191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGI---LVYSTCSLEPEENEFVIQWALDNFD  264 (313)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEE---EEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred             EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcE---EEEeeccCChHhHHHHHHHHHhcCC
Confidence            865543331               1111111       0 1 4555543   6777766666667778888876554

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.015  Score=54.18  Aligned_cols=127  Identities=15%  Similarity=0.057  Sum_probs=83.6

Q ss_pred             CCCCeEEEecCcCCHHHHHHHHccC-CeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCceeEEEE
Q psy11730        288 VDKLSVLDVGCGAGLLGLYTLMNGA-AHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSKFDIILT  366 (496)
Q Consensus       288 ~~~~~VLDlGcGtG~~~~~la~~~~-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Ii~  366 (496)
                      .++.+|||+++|.|.=+..++..+. ..|+++|.++.-+..++.+....+   ..++.....+...........||.|++
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g---~~~~~~~~~~~~~~~~~~~~~fd~IL~  177 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG---MKATVKQGDGRYPSQWCGEQQFDRILL  177 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc---ccceeeeccccccchhcccccccEEEE
Confidence            4688999999999999999988655 689999999999888776653332   445555555544333333568999998


Q ss_pred             cccccccc----chHh-----------Hh-------he-e-eecCCCCCcccEEEeeccCCcccccccchhhHhcCCC
Q psy11730        367 SETIYSVA----NYNK-----------LL-------TV-W-CLFPTHTPKDLLKVTSAEGGKQRDEAITWFSIIYPRT  420 (496)
Q Consensus       367 ~~~l~~~~----~~~~-----------~~-------~~-~-~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (496)
                      ..+..-..    +++.           +.       .. + .+.|+|.   ++|..-.....++...+.+|...++..
T Consensus       178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~---lvYsTCS~~~~ENE~vv~~~l~~~~~~  252 (284)
T d1sqga2         178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT---LVYATCSVLPEENSLQIKAFLQRTADA  252 (284)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEE---EEEEESCCCGGGTHHHHHHHHHHCTTC
T ss_pred             eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCce---EEEeeecCchhhCHHHHHHHHHhCCCc
Confidence            65544332    1111           10       00 1 4555543   677776666667778888887776654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.93  E-value=0.012  Score=53.22  Aligned_cols=56  Identities=21%  Similarity=0.154  Sum_probs=47.1

Q ss_pred             hHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCc
Q psy11730        275 TFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP  331 (496)
Q Consensus       275 ~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~  331 (496)
                      ...|++.+.+....+|..|||-.||+|..+.++.+.| .+.+|+|++++-++.|+++
T Consensus       198 P~~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~R  253 (256)
T d1g60a_         198 PRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFV  253 (256)
T ss_dssp             CHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHH
T ss_pred             chhHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHH
Confidence            4567777777766789999999999999999955555 7899999999999998865

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.15  E-value=0.017  Score=52.87  Aligned_cols=58  Identities=14%  Similarity=0.099  Sum_probs=48.5

Q ss_pred             chHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccCCeEEEEeCCHHHHHHhcCcc
Q psy11730        274 CTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGAAHVSFQDYNQEVIESLTLPN  332 (496)
Q Consensus       274 ~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~v~giD~s~~~i~~a~~~~  332 (496)
                      -...|++.+.+....+|..|||-.||+|..++++.+.| .+.+|+|++++.++.|.++.
T Consensus       192 kP~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri  249 (279)
T d1eg2a_         192 KPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQL  249 (279)
T ss_dssp             CCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHH
T ss_pred             cchhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHH
Confidence            34567777777666689999999999999999955555 68999999999999998875

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.031  Score=52.65  Aligned_cols=77  Identities=18%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             CeEEEecCcCCHHHHHHHHccCC--eEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccC--CCceeEEEE
Q psy11730        291 LSVLDVGCGAGLLGLYTLMNGAA--HVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVI--HSKFDIILT  366 (496)
Q Consensus       291 ~~VLDlGcGtG~~~~~la~~~~~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~fD~Ii~  366 (496)
                      -+|+||.||.|.+++.|-..|..  -|.++|+++.+++..+.+.        ++..++.+|+.++....  ...+|++++
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dll~g   74 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC--------CCCCcccCchhhCCHhHcCCCCccEEEe
Confidence            47999999999999987777863  4789999999998766542        34556777877664321  136899999


Q ss_pred             ccccccccc
Q psy11730        367 SETIYSVAN  375 (496)
Q Consensus       367 ~~~l~~~~~  375 (496)
                      .++...++.
T Consensus        75 gpPCq~fS~   83 (343)
T d1g55a_          75 SPPCQPFTR   83 (343)
T ss_dssp             CCC------
T ss_pred             ecccccccc
Confidence            999888754

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=90.93  E-value=0.05  Score=49.28  Aligned_cols=110  Identities=14%  Similarity=0.005  Sum_probs=67.0

Q ss_pred             cccCceeeecchHHHHHHHHhCCCCCCCeEEEecCcCCHHHHHHHHccC-------------------------------
Q psy11730        264 VYEGGYKIWECTFDLLNFIKDNVAVDKLSVLDVGCGAGLLGLYTLMNGA-------------------------------  312 (496)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~VLDlGcGtG~~~~~la~~~~-------------------------------  312 (496)
                      .+.+.+..-..+..|+..+.....-.+..++|--||+|.+.+.+|....                               
T Consensus        25 ~~~~~~~~~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~  104 (249)
T d1o9ga_          25 PGYPAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL  104 (249)
T ss_dssp             TTBCCCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH
T ss_pred             CCCCCcchHHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHH
Confidence            3444444333444444444332223355799999999999998765321                               


Q ss_pred             ----------CeEEEEeCCHHHHHHhcCc-ccccccCCCCceEEEecccCCcccc----CCCceeEEEEccccccc
Q psy11730        313 ----------AHVSFQDYNQEVIESLTLP-NILMNTDNLEKCKFYHGDWGSLSAV----IHSKFDIILTSETIYSV  373 (496)
Q Consensus       313 ----------~~v~giD~s~~~i~~a~~~-~~~~~~~~~~~v~~~~~d~~~~~~~----~~~~fD~Ii~~~~l~~~  373 (496)
                                ..++|.|+++.+++.|++. ....+.+....+.+...|+.+....    .....++||+|+++-.-
T Consensus       105 ~~~~~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGER  180 (249)
T d1o9ga_         105 TARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGER  180 (249)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGS
T ss_pred             HHHhccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCcccc
Confidence                      1246778888887776431 1112234567888888887654321    13567999999998665

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.20  E-value=0.16  Score=42.61  Aligned_cols=45  Identities=18%  Similarity=0.011  Sum_probs=36.9

Q ss_pred             CCCCCeEEEecCc-CCHHHHHHHHccCCeEEEEeCCHHHHHHhcCc
Q psy11730        287 AVDKLSVLDVGCG-AGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP  331 (496)
Q Consensus       287 ~~~~~~VLDlGcG-tG~~~~~la~~~~~~v~giD~s~~~i~~a~~~  331 (496)
                      ..+|.+||-+||| .|.++..+++....+|+++|.|++.++.+++.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence            3468899999998 58888888876567899999999988887753

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.80  E-value=0.14  Score=44.23  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=25.3

Q ss_pred             hhhccCCceeeeCCcceEEEEeeeeeEEEeecc
Q psy11730        433 ELVQGPGETVFVPGGWWHVVLNLDTTVAVTQNF  465 (496)
Q Consensus       433 e~~~~~Ge~l~iP~gWwh~v~~l~~~i~v~~~~  465 (496)
                      .+.+++||++|||.||||.+.|..+.--+..++
T Consensus       120 ~~~v~~Gd~v~iP~g~~H~~~N~Gde~L~~l~v  152 (190)
T d1x82a_         120 WISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAI  152 (190)
T ss_dssp             EEEECTTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             EEEecCCcEEEEecceeEEeEECCCCCEEEEEE
Confidence            456899999999999999999995443333333

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.98  E-value=0.33  Score=41.80  Aligned_cols=43  Identities=26%  Similarity=0.241  Sum_probs=36.4

Q ss_pred             CCCeEEEecCcC-CHHHHHHHH-ccCCeEEEEeCCHHHHHHhcCc
Q psy11730        289 DKLSVLDVGCGA-GLLGLYTLM-NGAAHVSFQDYNQEVIESLTLP  331 (496)
Q Consensus       289 ~~~~VLDlGcGt-G~~~~~la~-~~~~~v~giD~s~~~i~~a~~~  331 (496)
                      +|.+||-+|||. |..+..+++ .+..+|+++|.+++.++.|++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            588999999998 777777775 5668999999999999988764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=82.47  E-value=0.76  Score=38.01  Aligned_cols=44  Identities=20%  Similarity=0.169  Sum_probs=37.0

Q ss_pred             CCCCeEEEecCc-CCHHHHHHHHccCCeEEEEeCCHHHHHHhcCc
Q psy11730        288 VDKLSVLDVGCG-AGLLGLYTLMNGAAHVSFQDYNQEVIESLTLP  331 (496)
Q Consensus       288 ~~~~~VLDlGcG-tG~~~~~la~~~~~~v~giD~s~~~i~~a~~~  331 (496)
                      .++.+||=+||| .|.++..+++....+|+++|.+++-++.+++.
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc
Confidence            458899999999 48888888876667999999999999988764

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=81.33  E-value=2.6  Score=39.61  Aligned_cols=76  Identities=14%  Similarity=0.228  Sum_probs=47.6

Q ss_pred             CCCeEEEecCcCCHHHHHHHHcc--------CCeEEEEeCCHHHHHHhcCcccccccCCCCceEEEecccCCccccCCCc
Q psy11730        289 DKLSVLDVGCGAGLLGLYTLMNG--------AAHVSFQDYNQEVIESLTLPNILMNTDNLEKCKFYHGDWGSLSAVIHSK  360 (496)
Q Consensus       289 ~~~~VLDlGcGtG~~~~~la~~~--------~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  360 (496)
                      +.-.|+|+|+|+|.++.-++...        ...++.+|.|+.+.+.-++..     ....++.. ..++++++    ..
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l-----~~~~~i~w-~~~~~~~~----~~  148 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL-----AGIRNIHW-HDSFEDVP----EG  148 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS-----TTCSSEEE-ESSGGGSC----CS
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh-----ccccccee-ccChhhcc----cC
Confidence            44589999999999988765421        235889999999877644332     12234443 23444433    22


Q ss_pred             eeEEEEcccccccc
Q psy11730        361 FDIILTSETIYSVA  374 (496)
Q Consensus       361 fD~Ii~~~~l~~~~  374 (496)
                      .-+|+|++.+--++
T Consensus       149 ~g~iiaNE~fDAlP  162 (365)
T d1zkda1         149 PAVILANEYFDVLP  162 (365)
T ss_dssp             SEEEEEESSGGGSC
T ss_pred             CeEEEecccCcccc
Confidence            36788887765554