Psyllid ID: psy11738
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | 2.2.26 [Sep-21-2011] | |||||||
| Q32KL4 | 317 | Regulator of microtubule | no | N/A | 0.662 | 0.675 | 0.418 | 2e-46 | |
| Q96DB5 | 314 | Regulator of microtubule | yes | N/A | 0.662 | 0.681 | 0.418 | 6e-46 | |
| Q5R8E4 | 314 | Regulator of microtubule | yes | N/A | 0.662 | 0.681 | 0.418 | 9e-46 | |
| Q4G069 | 310 | Regulator of microtubule | yes | N/A | 0.662 | 0.690 | 0.409 | 4e-45 | |
| Q9DCV4 | 305 | Regulator of microtubule | yes | N/A | 0.662 | 0.701 | 0.409 | 1e-44 | |
| Q5EAU9 | 463 | Regulator of microtubule | N/A | N/A | 0.659 | 0.460 | 0.333 | 2e-27 | |
| Q66H15 | 471 | Regulator of microtubule | no | N/A | 0.662 | 0.454 | 0.286 | 3e-23 | |
| Q3UJU9 | 470 | Regulator of microtubule | no | N/A | 0.585 | 0.402 | 0.287 | 5e-23 | |
| Q0P4W3 | 412 | Regulator of microtubule | no | N/A | 0.588 | 0.461 | 0.319 | 2e-21 | |
| Q1JQC5 | 471 | Regulator of microtubule | no | N/A | 0.597 | 0.409 | 0.276 | 7e-20 |
| >sp|Q32KL4|RMD1_BOVIN Regulator of microtubule dynamics protein 1 OS=Bos taurus GN=RMDN1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 139/215 (64%), Gaps = 1/215 (0%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
EE L+++D L+E + E++ ++L + ED E++WRL R ++A S + S+ +KK L
Sbjct: 87 EEVLEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSGT-SEEEKKFL 145
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
+ A AL ++E A HKW A+ + + EG KA+I IK H KAIEL P
Sbjct: 146 VYEALEYAKRALEKNESSCAAHKWYAICIGDVGDYEGIKAKIANAYIIKEHFEKAIELNP 205
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+T++ ++G+WC+ + +MPWYQR+IA +F T P S+YEEAL YF AE+ P FYS+N
Sbjct: 206 KDATSIHLMGIWCYTVAEMPWYQRRIAKVLFATPPGSTYEEALGYFHRAEQVDPNFYSKN 265
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 266 LLLLGKTYLKLHNKKLAAFWLTKAKDYPAHTEEDK 300
|
Bos taurus (taxid: 9913) |
| >sp|Q96DB5|RMD1_HUMAN Regulator of microtubule dynamics protein 1 OS=Homo sapiens GN=RMDN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (468), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 141/215 (65%), Gaps = 1/215 (0%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
EE L+++D L+E + E++ ++L + ED E++WRL R ++A S + S+ +KK L
Sbjct: 84 EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRT-SEEEKKLL 142
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
+ A AL ++E +A HKW A+ L++ EG KA+I IK H KAIEL P
Sbjct: 143 VYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAYIIKEHFEKAIELNP 202
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+T++ ++G+WC+ +MPWYQR+IA +F T P+S+YE+AL YF AE+ P FYS+N
Sbjct: 203 KDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALGYFHRAEQVDPNFYSKN 262
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 263 LLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDK 297
|
Homo sapiens (taxid: 9606) |
| >sp|Q5R8E4|RMD1_PONAB Regulator of microtubule dynamics protein 1 OS=Pongo abelii GN=RMDN1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 140/215 (65%), Gaps = 1/215 (0%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
EE L+++D L E + E++ ++L + ED E++WRL R ++A S + S+ +KK L
Sbjct: 84 EEILEQADYLCESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSRT-SEEEKKLL 142
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
+ A AL ++E +A HKW A+ L++ EG KA+I IK H KAIEL P
Sbjct: 143 VYEALEYAKRALEKNESSFAAHKWYAICLSDVGDYEGIKAKIANAYIIKEHFEKAIELNP 202
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+T++ ++G+WC+ +MPWYQR+IA +F T P+S+YE+AL YF AE+ P FYS+N
Sbjct: 203 KDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALSYFHRAEQVDPNFYSKN 262
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 263 LLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDK 297
|
Pongo abelii (taxid: 9601) |
| >sp|Q4G069|RMD1_RAT Regulator of microtubule dynamics protein 1 OS=Rattus norvegicus GN=Rmdn1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 138/215 (64%), Gaps = 1/215 (0%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
EE L+++D L+E + E++ ++L + EDVE++WRL R ++A + S+ +KK L
Sbjct: 84 EEILEQADYLYESGETEKLYQLLTQYKESEDVELLWRLARASRDIAQLCKT-SEEEKKVL 142
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
+ A AL + +A HKW A+ +++ EG K +I IK H KAIEL P
Sbjct: 143 LYEALEYAKRALEKKGSSFAAHKWYAICISDVGDYEGIKVKIANAYVIKEHFEKAIELNP 202
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+T++ ++G+WC+ +MPWYQR+IA +F P+S+YEEALKYF AE+ P FYS+N
Sbjct: 203 KDATSIHLMGIWCYTFAEMPWYQRRIAEVLFANPPSSTYEEALKYFHRAEEVDPNFYSKN 262
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 263 LLLLGKTYLKLNNKKLAAFWLVKAKSYPAHTEEDK 297
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q9DCV4|RMD1_MOUSE Regulator of microtubule dynamics protein 1 OS=Mus musculus GN=Rmdn1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 137/215 (63%), Gaps = 1/215 (0%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
EE L ++D L+E + E++ ++L + ED E++WRL R ++A S + S+ +KK L
Sbjct: 79 EEILAQADYLYESGETEKLYQLLIQYKESEDGELLWRLARASRDIAQLSKT-SEEEKKVL 137
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
+ A AL + E A HKW A+ +++ EG K +I IK H KAIEL P
Sbjct: 138 VYEALDYAKRALEKKESSSAAHKWYAICISDVGDYEGIKVKIANAYVIKEHFEKAIELNP 197
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+T++ ++G+WC+ +MPWYQR+IA +F P+S+YEEAL+YF +AE+ P FYS+N
Sbjct: 198 KDATSIHLMGIWCYTFAEMPWYQRRIAKVLFANPPSSTYEEALRYFHKAEEVDPNFYSKN 257
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+L+LGKTY++L N + AA++L K YP ++D+
Sbjct: 258 LLLLGKTYLKLNNKKLAAFWLVKAKGYPAHTEEDK 292
|
Mus musculus (taxid: 10090) |
| >sp|Q5EAU9|RMD3_XENLA Regulator of microtubule dynamics protein 3 OS=Xenopus laevis GN=rmdn3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 123/231 (53%), Gaps = 18/231 (7%)
Query: 17 FLKKSDDLFE---EQQFEEV-----NKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSD 68
L+KSD+L EQQ E NK+L Y + E +WRL R ++ T + D
Sbjct: 229 LLQKSDELHSGSTEQQREGFQLLLNNKLL----YGDHQEFLWRLARSYSDMCTIAE---D 281
Query: 69 ADKKQLILSAYFLVYNALPQHEDHYA-IHKWLAVILNEKATLEGTKARIQQLETIKHHMN 127
A +K+ S A Q D A HKW A++ + + EG + RIQ K H+
Sbjct: 282 AQEKKSFASEGKEEAEAALQKGDQNAECHKWFAILCGQLSEHEGIQKRIQTGYLFKEHIE 341
Query: 128 KAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 187
KAI LKP D+ ++LG WC+E++++ W +RK A+A+++ PT++ EAL+ FL+AE
Sbjct: 342 KAISLKPGDARCYYLLGRWCYEVSNLGWLERKTASALYENPPTATVHEALQNFLKAEDLT 401
Query: 188 PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP--VKQDKDQCFEITDM 236
P F +++ K Y L N AA++L++ + P ++D++ I +M
Sbjct: 402 PGFSKAARVLIAKCYKDLGNNATAAHWLKLAADLPNVTQEDRESTTTIEEM 452
|
Xenopus laevis (taxid: 8355) |
| >sp|Q66H15|RMD3_RAT Regulator of microtubule dynamics protein 3 OS=Rattus norvegicus GN=Rmdn3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 121/220 (55%), Gaps = 6/220 (2%)
Query: 17 FLKKSDDLFE--EQQFEEVNKMLESSE--YKEDVEIIWRLVRVKYNLATHSSSLSDADKK 72
L+++D+L + EQ +E ++L +++ Y + +WRL R ++ + +++KK
Sbjct: 242 LLQQADELHQGSEQNKQEGFQLLLNNKLAYGSRQDFLWRLARAYSDMTELTEE--ESEKK 299
Query: 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL 132
L+ AL + ++ A H W AV+ + A EG RIQ + K H++KAIEL
Sbjct: 300 SYALNGKEEAEAALKKGDESAASHLWYAVLCGQLAEHEGISKRIQSGFSFKEHVDKAIEL 359
Query: 133 KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS 192
+P+D F+LG WC++++ + W ++K A A+F++ +++ ++AL+ FL+AE+ P F
Sbjct: 360 QPEDPRGHFLLGRWCYQVSHLSWLEKKTATALFESPLSATVQDALQSFLKAEELQPGFSK 419
Query: 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232
+ + K Y L +A +L + + P ++D F+
Sbjct: 420 AGRVYISKCYRELGKNSEARKWLNLAQELPNITNEDSAFQ 459
|
May participate in differentiation and apoptosis of keratinocytes. Overexpression induces apoptosis. Rattus norvegicus (taxid: 10116) |
| >sp|Q3UJU9|RMD3_MOUSE Regulator of microtubule dynamics protein 3 OS=Mus musculus GN=Rmdn3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 104/191 (54%), Gaps = 2/191 (1%)
Query: 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAV 101
Y + +WRL R +++ + ++ KK L+ AL + ++ A H W AV
Sbjct: 271 YGSRQDFLWRLARAYSDMSDLTEE--ESGKKSYALNGKEEAEAALKKGDESAACHLWYAV 328
Query: 102 ILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161
+ + A EG RIQ + K H++KAIEL+P+D F+LG WC++++ + W ++K A
Sbjct: 329 LCGQLAEHEGISKRIQSGFSFKEHVDKAIELQPEDPRGHFLLGRWCYQVSHLNWLEKKTA 388
Query: 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221
A+F++ +++ ++AL+ FL+AE+ P F + + K Y L +A ++++ +
Sbjct: 389 TALFESPLSATVQDALQSFLKAEELQPGFSKAGRVYISKCYRELGKNSEARKWMKLAQEL 448
Query: 222 PVKQDKDQCFE 232
P ++D F+
Sbjct: 449 PDVTNEDSAFQ 459
|
May participate in differentiation and apoptosis of keratinocytes. Overexpression induces apoptosis. Mus musculus (taxid: 10090) |
| >sp|Q0P4W3|RMD2_XENTR Regulator of microtubule dynamics protein 2 OS=Xenopus tropicalis GN=rmdn2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
Query: 36 MLESSE-YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYA 94
ML++ E Y VE +WRL R ++ +S + + KK + + A+ Q ED A
Sbjct: 205 MLDNKEKYGNKVEFLWRLARAYGDMFDMTSDVEE--KKNYAANGKSIAGKAI-QLEDCSA 261
Query: 95 -IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153
H+W A++ + E + +I+ K H++KAIEL P D ++LG WC+ ++ +
Sbjct: 262 ESHRWFAIMCGYLSEYESVQDKIKNGYLFKEHLDKAIELDPKDPLQYYLLGRWCYAVSQL 321
Query: 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 213
W +RK+A A+F PT++ +EAL+ FL+ E+ HP + N + L K Y L A
Sbjct: 322 SWIERKVAAALFGNPPTATIQEALQNFLKVEEMHPGYSKYNYVFLAKCYKDLGQKSVALK 381
Query: 214 YLEMTKNYPV--KQDKD 228
Y + K+DKD
Sbjct: 382 YCDEASAMTAANKEDKD 398
|
Xenopus tropicalis (taxid: 8364) |
| >sp|Q1JQC5|RMD3_BOVIN Regulator of microtubule dynamics protein 3 OS=Bos taurus GN=RMDN3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 102/199 (51%), Gaps = 6/199 (3%)
Query: 34 NKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93
NK++ S + +WRL R ++ + S+ K+ LS AL + ++
Sbjct: 267 NKLVHGSRQ----DFLWRLARAYSDMCELTEEASE--KRSYALSGKEEAEVALEKGNENA 320
Query: 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153
H+W AV+ + A EG + RIQ + K H++KAI LKP++ F+LG WC++++ +
Sbjct: 321 ECHQWYAVLCGQLAEHEGIQRRIQSGFSFKEHVDKAIALKPENPMAHFLLGRWCYQVSHL 380
Query: 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 213
W ++K A A+ ++ ++ ++AL FL+AE+ P F + + K Y L +A
Sbjct: 381 SWLEKKTATALSESPLGATVQDALSSFLKAEELQPGFSKAGRIYICKCYKELGKNPEAKE 440
Query: 214 YLEMTKNYPVKQDKDQCFE 232
++++ P +D F+
Sbjct: 441 WMKLALELPNVTKEDSAFQ 459
|
May participate in differentiation and apoptosis of keratinocytes. Overexpression induces apoptosis. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | ||||||
| 383859324 | 291 | PREDICTED: regulator of microtubule dyna | 0.668 | 0.742 | 0.497 | 2e-56 | |
| 156546322 | 293 | PREDICTED: regulator of microtubule dyna | 0.659 | 0.726 | 0.483 | 1e-54 | |
| 66549686 | 245 | PREDICTED: regulator of microtubule dyna | 0.674 | 0.889 | 0.466 | 7e-53 | |
| 307187735 | 292 | Regulator of microtubule dynamics protei | 0.656 | 0.726 | 0.493 | 7e-53 | |
| 380011439 | 245 | PREDICTED: regulator of microtubule dyna | 0.674 | 0.889 | 0.470 | 7e-53 | |
| 322799264 | 294 | hypothetical protein SINV_03527 [Solenop | 0.659 | 0.724 | 0.472 | 2e-52 | |
| 357611472 | 243 | hypothetical protein KGM_15241 [Danaus p | 0.705 | 0.938 | 0.447 | 1e-51 | |
| 332016313 | 295 | Regulator of microtubule dynamics protei | 0.656 | 0.718 | 0.460 | 1e-50 | |
| 307191947 | 251 | Regulator of microtubule dynamics protei | 0.656 | 0.844 | 0.460 | 2e-50 | |
| 340713774 | 202 | PREDICTED: regulator of microtubule dyna | 0.563 | 0.900 | 0.508 | 8e-47 |
| >gi|383859324|ref|XP_003705145.1| PREDICTED: regulator of microtubule dynamics protein 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 151/219 (68%), Gaps = 3/219 (1%)
Query: 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDA 69
V E + K+D LF++++++E+ +L + + DVEIIWRL R Y +A + S+
Sbjct: 62 VITTKEVVIGKADALFDQEKYKEIYNLLSNYKDSGDVEIIWRLCRAMYKMA---KTASEV 118
Query: 70 DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKA 129
+ K++I AY L+ AL +E+H+A+HKW +++LN K + EGTKA+I++ IKHHM KA
Sbjct: 119 EAKRIIYEAYDLILKALRVNENHWAVHKWTSILLNTKCSYEGTKAQIKESYNIKHHMLKA 178
Query: 130 IELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 189
IEL P D+T L+MLG WCF++ D+ WYQRKIA+ IF PTSSY+EAL+YF AEK P
Sbjct: 179 IELNPQDATVLYMLGTWCFQVADLSWYQRKIASIIFGEPPTSSYQEALQYFENAEKVDPN 238
Query: 190 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228
FYS N+LML KTY++L+N E A YL MT YP K D D
Sbjct: 239 FYSHNLLMLAKTYLKLQNTELATKYLLMTIEYPAKNDDD 277
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156546322|ref|XP_001606351.1| PREDICTED: regulator of microtubule dynamics protein 1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 148/215 (68%), Gaps = 2/215 (0%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
E + K+D LF+++ ++E+ K+L S + +DVEI+WRL R Y ++ S D++ ++L
Sbjct: 68 ELLIAKADALFDQEDYKEIYKLLSSYKDNKDVEILWRLSRALYKMSKLESK--DSEAQKL 125
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
I AY L+ AL +DH+A+HKW+A++LN K EGTK +I++L IK HM +A EL P
Sbjct: 126 IYEAYDLISEALKLQDDHWAVHKWVAILLNSKTAYEGTKIKIKELYNIKRHMLRASELNP 185
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
+D+TTL+M+G WC+++ D+ WYQRKIA AIF PTSS+EEAL YF +AE+ P FY N
Sbjct: 186 NDATTLYMIGNWCYQVADLAWYQRKIAAAIFGEPPTSSFEEALHYFEQAERVDPNFYGHN 245
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+LMLGKTY++L E A YL+M YP K D D
Sbjct: 246 LLMLGKTYLKLNKKEDALKYLKMASEYPAKNDDDH 280
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66549686|ref|XP_395900.2| PREDICTED: regulator of microtubule dynamics protein 1-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 151/221 (68%), Gaps = 3/221 (1%)
Query: 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSD 68
T+ E + K+D L++++Q++E+ K L + + DVEIIWRL R Y ++ +++ +
Sbjct: 15 TIITTKEVLIAKADALYDQEQYQEIYKFLINYKDSGDVEIIWRLCRAMYKMSKNANEI-- 72
Query: 69 ADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNK 128
D K+LI A L+ +A+ EDH+ HKW +++LN K EG KA+I++ IK HM +
Sbjct: 73 -DGKKLIFEACHLILDAIKIKEDHWVAHKWASILLNSKTLYEGMKAQIKESYNIKKHMLR 131
Query: 129 AIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 188
AIEL P + T ++MLG WC++I D+ WYQRKIA+ IF P+SS+EEALKYF AE+ P
Sbjct: 132 AIELNPKEPTLMYMLGSWCYQIADLTWYQRKIASVIFAEPPSSSFEEALKYFENAEEIEP 191
Query: 189 LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
FYSQN+LMLGKT+++L N E+A YL+MT +YP K D D+
Sbjct: 192 NFYSQNLLMLGKTHLKLNNKEKALKYLKMTVDYPAKNDDDR 232
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307187735|gb|EFN72707.1| Regulator of microtubule dynamics protein 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 142/215 (66%), Gaps = 3/215 (1%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
E + K D LF++ ++ + +L E +DVEI+WRL R Y + S SD + ++L
Sbjct: 68 EVLIAKVDALFDQGDYKSIYNILSKYEDSKDVEILWRLCRAIYKM---SEMASDVEARKL 124
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
I Y L+ AL EDHYA+HKW+++ LN KAT EGTKA I++L IK H+ +A ELKP
Sbjct: 125 IYKGYDLISKALDIQEDHYAVHKWMSIFLNSKATFEGTKAHIKELYNIKKHLLRASELKP 184
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+TTL+MLG WC+EI+ + WYQRKIA+ IF+ PTSS+EEAL Y AEK P FYS+N
Sbjct: 185 TDATTLYMLGCWCYEISSLAWYQRKIASIIFEEPPTSSFEEALMYHENAEKIDPNFYSRN 244
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+LMLGKTY++L E A YL+ + K D DQ
Sbjct: 245 LLMLGKTYLKLNRKEDAVKYLKKAVEFSAKTDDDQ 279
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380011439|ref|XP_003689813.1| PREDICTED: regulator of microtubule dynamics protein 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 150/221 (67%), Gaps = 3/221 (1%)
Query: 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSD 68
T+ E + K+D L++++Q++E+ K L + + DVEIIWRL R Y + S + ++
Sbjct: 15 TIITTKEVLIAKADALYDQEQYQEIYKFLINYKDSGDVEIIWRLCRAMYKM---SKNANE 71
Query: 69 ADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNK 128
D K+LI A L+ +A+ EDH+ HKW +++LN K EG KA+I++ IK HM +
Sbjct: 72 VDGKKLIFEACHLILDAIKIKEDHWVAHKWASILLNSKTLYEGMKAQIKESYNIKKHMLR 131
Query: 129 AIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 188
AIEL P + T ++MLG WC++I D+ WYQRKIA+ IF P+SS+EEALKYF AE+ P
Sbjct: 132 AIELNPKEPTLMYMLGSWCYQIADLTWYQRKIASIIFAEPPSSSFEEALKYFESAEEIEP 191
Query: 189 LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
FYSQN+LMLGKT+++L N E+A YL+MT +YP K D D+
Sbjct: 192 NFYSQNLLMLGKTHLKLNNKEKALKYLKMTMDYPAKNDDDR 232
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322799264|gb|EFZ20655.1| hypothetical protein SINV_03527 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 143/216 (66%), Gaps = 3/216 (1%)
Query: 14 SEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQ 73
++E L K+D LF++ + + +L + + +DVEI+WRL R Y + S SD + ++
Sbjct: 69 TKELLTKADTLFDQGDYRGIYNLLSNYKDNKDVEILWRLSRAIYKM---SEMASDVEGQK 125
Query: 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK 133
LI Y L+ AL EDHYA+HKW+++ LN K+ LEGTK I++ IK HM +A+ELK
Sbjct: 126 LIYEGYDLLCMALEIQEDHYAVHKWMSIFLNSKSILEGTKTLIKESYNIKKHMLRALELK 185
Query: 134 PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ 193
P D+T L+M+G WC+E+ MPWYQRKIA+ +F PTSS EE+L Y AEK P FYS+
Sbjct: 186 PGDATLLYMIGCWCYEVASMPWYQRKIASIVFAEPPTSSLEESLSYLENAEKNDPNFYSR 245
Query: 194 NVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
N+LMLGKTY++L E A YL+ +P K D+DQ
Sbjct: 246 NLLMLGKTYLKLNRKEDAIKYLKKAAEFPAKDDEDQ 281
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357611472|gb|EHJ67505.1| hypothetical protein KGM_15241 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 150/230 (65%), Gaps = 2/230 (0%)
Query: 1 MSSDEAAKTVSKV-SEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNL 59
M +DE AK V L+ SD++FE ++EE +L + E KEDVEI WR+ RV YN+
Sbjct: 1 MDNDERAKDKKAVLINSILEVSDNVFETGKYEECYNLLINCENKEDVEIKWRISRVLYNM 60
Query: 60 ATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQL 119
A + + +K+L A+ ++ LP H DH+A+ KW A+ L K+ EG K RI+QL
Sbjct: 61 AK-DQKYNQSYRKELTFKAHEVISQELPSHYDHFAVQKWYALTLEAKSKSEGLKQRIEQL 119
Query: 120 ETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179
ET+K HM+ A+ + P+D++ L MLG WC++ITD+PW+QRK A ++ LP S+YE+AL+Y
Sbjct: 120 ETVKKHMDLAVSMNPNDASLLHMLGEWCYQITDLPWHQRKTAETLYAKLPNSTYEDALEY 179
Query: 180 FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
FL AE+ P FYS N+L LG Y++L +QA YYL++ +YP K + D
Sbjct: 180 FLRAEEAQPRFYSINLLRLGMCYLKLNMEDQAKYYLKLAASYPAKSNDDH 229
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332016313|gb|EGI57226.1| Regulator of microtubule dynamics protein 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 142/215 (66%), Gaps = 3/215 (1%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
+E L K+D LF++ + + +L + + +DVEI+WRL R Y + S SD + ++L
Sbjct: 69 KELLAKADTLFDQGNYRNIYNLLSNYKDSKDVEILWRLSRAIYKM---SEIASDVEAQKL 125
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
Y L+ AL EDHYA+HKW+++ LN+K+ LEGTK I++ IK HM +A+EL P
Sbjct: 126 TYEGYDLLCKALDIQEDHYALHKWISIFLNKKSILEGTKTHIKESYNIKKHMLRALELNP 185
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+T L+MLG WC+E++++ WYQRKIA+ +F PTS++EEAL Y AEK P FYS N
Sbjct: 186 SDATLLYMLGSWCYEVSNLTWYQRKIASVVFGEPPTSTFEEALMYHEAAEKTDPNFYSHN 245
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+LMLGKTY++L E A Y + T +P K D+DQ
Sbjct: 246 LLMLGKTYLKLNRTEDAIKYFKKTAEFPAKNDEDQ 280
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307191947|gb|EFN75337.1| Regulator of microtubule dynamics protein 1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 145/215 (67%), Gaps = 3/215 (1%)
Query: 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQL 74
E L ++D LF + ++E+ +L + + +DVEI+WRL R Y + S SD + ++L
Sbjct: 25 EILLDRADALFNQGNYKEIYDILSNHKDSKDVEILWRLCRAIYKI---SKVASDVEAQKL 81
Query: 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134
I Y L+ AL +DH+A+HKW+A+ L+ K LEGTKA I++L+ IK H+ +A +L P
Sbjct: 82 IHEGYDLISTALDIQKDHHAVHKWMAIFLDSKGILEGTKAHIRELQNIKKHLLEASKLNP 141
Query: 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194
D+TT +MLG WC+EI+++ WYQRKIA+ IF PTS++EEAL Y+ +AEK P FYS N
Sbjct: 142 ADATTFYMLGCWCYEISNLTWYQRKIASIIFGEPPTSTFEEALMYYEKAEKVDPNFYSHN 201
Query: 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+LMLGKTY++L+ E A YL+ +P + D DQ
Sbjct: 202 LLMLGKTYLKLKRKEDAIKYLQKVLLFPAENDDDQ 236
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340713774|ref|XP_003395411.1| PREDICTED: regulator of microtubule dynamics protein 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 94/185 (50%), Positives = 126/185 (68%), Gaps = 3/185 (1%)
Query: 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILN 104
D+EIIWRL R Y L S +S+ D K+LI AY L+ AL ED++A HKW +++LN
Sbjct: 8 DIEIIWRLCRAMYKL---SKIVSEVDGKKLIFEAYDLILKALEIKEDNWAAHKWASILLN 64
Query: 105 EKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164
K EG KA+I++ IK HM +A+EL P + T ++MLG WC+++ D+ WYQRKIA+ I
Sbjct: 65 SKTLYEGVKAQIKESYNIKKHMLRAMELNPKEPTLMYMLGTWCYQVADLTWYQRKIASVI 124
Query: 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224
F P+SS+EEALKYF AE+ P FYSQN+LMLGKTY++L E A YL+M YP K
Sbjct: 125 FGEPPSSSFEEALKYFETAEEIDPNFYSQNLLMLGKTYLKLNQKELAMKYLKMALEYPAK 184
Query: 225 QDKDQ 229
+ D+
Sbjct: 185 NEDDR 189
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | ||||||
| UNIPROTKB|F1RXD4 | 317 | FAM82B "Uncharacterized protei | 0.687 | 0.700 | 0.410 | 2.3e-46 | |
| UNIPROTKB|Q96DB5 | 314 | RMDN1 "Regulator of microtubul | 0.702 | 0.722 | 0.406 | 4.8e-46 | |
| UNIPROTKB|Q32KL4 | 317 | RMDN1 "Regulator of microtubul | 0.687 | 0.700 | 0.415 | 6.2e-46 | |
| RGD|1563085 | 310 | Rmdn1 "regulator of microtubul | 0.702 | 0.732 | 0.397 | 2.1e-45 | |
| MGI|MGI:1913552 | 305 | Rmdn1 "regulator of microtubul | 0.702 | 0.744 | 0.397 | 9.1e-45 | |
| ZFIN|ZDB-GENE-070928-17 | 295 | zgc:171674 "zgc:171674" [Danio | 0.659 | 0.722 | 0.407 | 5e-44 | |
| UNIPROTKB|F1NBF8 | 264 | FAM82B "Uncharacterized protei | 0.668 | 0.818 | 0.395 | 8.4e-42 | |
| UNIPROTKB|E5RH53 | 248 | RMDN1 "Regulator of microtubul | 0.662 | 0.862 | 0.375 | 9.9e-39 | |
| UNIPROTKB|H0YB83 | 225 | RMDN1 "Regulator of microtubul | 0.566 | 0.813 | 0.394 | 3.6e-34 | |
| DICTYBASE|DDB_G0278793 | 229 | DDB_G0278793 "Regulator of mic | 0.656 | 0.925 | 0.369 | 1.2e-33 |
| UNIPROTKB|F1RXD4 FAM82B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 92/224 (41%), Positives = 145/224 (64%)
Query: 6 AAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSS 65
A V++V EE L+++D L+E + E++ ++L + ED E++WRL R ++A S +
Sbjct: 79 ATAKVTRV-EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDIAQLSGT 137
Query: 66 LSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHH 125
S+ +KK L+ A AL ++E +A HKW A+ +++ EG KA+I IK H
Sbjct: 138 -SEEEKKLLVYEALEYAKRALEKNESSFAAHKWYAICISDVGDYEGIKAKIANAYIIKEH 196
Query: 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185
KAIEL P D+T++ ++G+WC+ +MPWYQR+IA +F P+S+YEEAL YF AE+
Sbjct: 197 FEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFAAPPSSTYEEALGYFHRAEQ 256
Query: 186 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
P FYS+N+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 257 VDPNFYSKNLLLLGKTYLKLHNKKLAAFWLTKAKDYPAHTEEDK 300
|
|
| UNIPROTKB|Q96DB5 RMDN1 "Regulator of microtubule dynamics protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 93/229 (40%), Positives = 146/229 (63%)
Query: 1 MSSDEAAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLA 60
+S +KV EE L+++D L+E + E++ ++L + ED E++WRL R ++A
Sbjct: 71 ISQAAVVHATAKV-EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVA 129
Query: 61 THSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120
S + S+ +KK L+ A AL ++E +A HKW A+ L++ EG KA+I
Sbjct: 130 QLSRT-SEEEKKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAY 188
Query: 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180
IK H KAIEL P D+T++ ++G+WC+ +MPWYQR+IA +F T P+S+YE+AL YF
Sbjct: 189 IIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALGYF 248
Query: 181 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
AE+ P FYS+N+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 249 HRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDK 297
|
|
| UNIPROTKB|Q32KL4 RMDN1 "Regulator of microtubule dynamics protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 93/224 (41%), Positives = 144/224 (64%)
Query: 6 AAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSS 65
AA V ++ EE L+++D L+E + E++ ++L + ED E++WRL R ++A S +
Sbjct: 79 AAAKVFEI-EEVLEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLSGT 137
Query: 66 LSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHH 125
S+ +KK L+ A AL ++E A HKW A+ + + EG KA+I IK H
Sbjct: 138 -SEEEKKFLVYEALEYAKRALEKNESSCAAHKWYAICIGDVGDYEGIKAKIANAYIIKEH 196
Query: 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185
KAIEL P D+T++ ++G+WC+ + +MPWYQR+IA +F T P S+YEEAL YF AE+
Sbjct: 197 FEKAIELNPKDATSIHLMGIWCYTVAEMPWYQRRIAKVLFATPPGSTYEEALGYFHRAEQ 256
Query: 186 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
P FYS+N+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 257 VDPNFYSKNLLLLGKTYLKLHNKKLAAFWLTKAKDYPAHTEEDK 300
|
|
| RGD|1563085 Rmdn1 "regulator of microtubule dynamics 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 91/229 (39%), Positives = 143/229 (62%)
Query: 1 MSSDEAAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLA 60
+S +KV EE L+++D L+E + E++ ++L + EDVE++WRL R ++A
Sbjct: 71 ISQAAVVHATAKV-EEILEQADYLYESGETEKLYQLLTQYKESEDVELLWRLARASRDIA 129
Query: 61 THSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120
+ S+ +KK L+ A AL + +A HKW A+ +++ EG K +I
Sbjct: 130 QLCKT-SEEEKKVLLYEALEYAKRALEKKGSSFAAHKWYAICISDVGDYEGIKVKIANAY 188
Query: 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180
IK H KAIEL P D+T++ ++G+WC+ +MPWYQR+IA +F P+S+YEEALKYF
Sbjct: 189 VIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAEVLFANPPSSTYEEALKYF 248
Query: 181 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
AE+ P FYS+N+L+LGKTY++L N + AA++L K+YP ++D+
Sbjct: 249 HRAEEVDPNFYSKNLLLLGKTYLKLNNKKLAAFWLVKAKSYPAHTEEDK 297
|
|
| MGI|MGI:1913552 Rmdn1 "regulator of microtubule dynamics 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 91/229 (39%), Positives = 142/229 (62%)
Query: 1 MSSDEAAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLA 60
+S +KV EE L ++D L+E + E++ ++L + ED E++WRL R ++A
Sbjct: 66 ISQAAVVHATAKV-EEILAQADYLYESGETEKLYQLLIQYKESEDGELLWRLARASRDIA 124
Query: 61 THSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120
S + S+ +KK L+ A AL + E A HKW A+ +++ EG K +I
Sbjct: 125 QLSKT-SEEEKKVLVYEALDYAKRALEKKESSSAAHKWYAICISDVGDYEGIKVKIANAY 183
Query: 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180
IK H KAIEL P D+T++ ++G+WC+ +MPWYQR+IA +F P+S+YEEAL+YF
Sbjct: 184 VIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKVLFANPPSSTYEEALRYF 243
Query: 181 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+AE+ P FYS+N+L+LGKTY++L N + AA++L K YP ++D+
Sbjct: 244 HKAEEVDPNFYSKNLLLLGKTYLKLNNKKLAAFWLVKAKGYPAHTEEDK 292
|
|
| ZFIN|ZDB-GENE-070928-17 zgc:171674 "zgc:171674" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 88/216 (40%), Positives = 140/216 (64%)
Query: 14 SEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQ 73
+EE L+++D L+ + ++++++L+ D E +WRL RV +LA SS+ +K++
Sbjct: 68 AEEILEQADYLYSCGETQKLHQLLDKHRDSGDAEFLWRLARVCRDLALLSSA---EEKRR 124
Query: 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK 133
L A+ AL + E YA HKW A+ L++ EG K +I I+ H+ +AI+L
Sbjct: 125 LTYEAFQYATAALQRDEQCYAAHKWFAICLSDVGDYEGIKVKIGNSYIIREHLERAIQLN 184
Query: 134 PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ 193
P D+T++ +LG WCF ++PWYQRK+A IF + PT++YEEAL++FL AE+ P FYS+
Sbjct: 185 PRDATSIHILGFWCFAFAELPWYQRKVAAVIFGSPPTATYEEALEFFLRAEEVEPSFYSK 244
Query: 194 NVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
N+LMLGKTYM L + +QAA +L ++YP ++D+
Sbjct: 245 NLLMLGKTYMMLRDVQQAALWLTKARDYPAVTEEDR 280
|
|
| UNIPROTKB|F1NBF8 FAM82B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 87/220 (39%), Positives = 138/220 (62%)
Query: 12 KVSEEFLKKSDDLFEEQQFEEVNKML--ESSEYKEDVEIIWRLVRVKYNLATHSSSLSDA 69
KV+E ++++D L+ + E++ ++L + ED E++WRL R +LA S + ++
Sbjct: 34 KVAE-VIEQADYLYGSGETEKLYQLLVQHKNRTSEDAELLWRLARASRDLAQLSITSAE- 91
Query: 70 DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKA 129
+K+QL + AL ++E + A HKW A+ L++ EG K +I IK H +A
Sbjct: 92 EKRQLAYDSLEYAKRALEKNEANSAAHKWYAICLSDVGDYEGIKVKIGNAFVIKEHFERA 151
Query: 130 IELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 189
IEL P D+T++ ++G+WC+ ++PWYQRKIA +F T PTS+YEEAL+YF AE+ P
Sbjct: 152 IELNPKDATSVHLMGVWCYSFAELPWYQRKIAAMLFATPPTSTYEEALRYFHMAEEADPN 211
Query: 190 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
FYS+N+L LGKTY++L N + A +L K YP ++D+
Sbjct: 212 FYSKNLLFLGKTYLKLNNKKMALLWLSKAKEYPAHTEEDK 251
|
|
| UNIPROTKB|E5RH53 RMDN1 "Regulator of microtubule dynamics protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 86/229 (37%), Positives = 136/229 (59%)
Query: 1 MSSDEAAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLA 60
+S +KV EE L+++D L+E + E++ ++L + ED E++WRL R ++A
Sbjct: 27 ISQAAVVHATAKV-EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVA 85
Query: 61 THSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120
S + S+ +KK L+ A AL ++E +A HKW A+ L++ EG KA+I
Sbjct: 86 QLSRT-SEEEKKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAY 144
Query: 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180
IK H KAIEL P D+T++ ++G+WC+ +MPWYQR+IA +F T P+S+YE+AL YF
Sbjct: 145 IIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALGYF 204
Query: 181 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
AE+ GKTY++L N + AA++L K+YP ++D+
Sbjct: 205 HRAEQ-------------GKTYLKLHNKKLAAFWLMKAKDYPAHTEEDK 240
|
|
| UNIPROTKB|H0YB83 RMDN1 "Regulator of microtubule dynamics protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 73/185 (39%), Positives = 114/185 (61%)
Query: 1 MSSDEAAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLA 60
+S +KV EE L+++D L+E + E++ ++L + ED E++WRL R ++A
Sbjct: 17 ISQAAVVHATAKV-EEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVA 75
Query: 61 THSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120
S + S+ +KK L+ A AL ++E +A HKW A+ L++ EG KA+I
Sbjct: 76 QLSRT-SEEEKKLLVYEALEYAKRALEKNESSFASHKWYAICLSDVGDYEGIKAKIANAY 134
Query: 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180
IK H KAIEL P D+T++ ++G+WC+ +MPWYQR+IA +F T P+S+YE+AL YF
Sbjct: 135 IIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFATPPSSTYEKALGYF 194
Query: 181 LEAEK 185
AE+
Sbjct: 195 HRAEQ 199
|
|
| DICTYBASE|DDB_G0278793 DDB_G0278793 "Regulator of microtubule dynamics protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 81/219 (36%), Positives = 130/219 (59%)
Query: 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDAD- 70
+++ + K D L E++F +++++L +Y EDVEI+WRL R ++ + +++ D
Sbjct: 4 AQKIVDKVDQLHLEREFVKISELLTEGHKQYPEDVEIMWRLARSYFD---KNEEVANKDE 60
Query: 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAI 130
KK+LI A L A + +H+A+HKWLA++++ +K +I IK H KA
Sbjct: 61 KKKLIEQALELTNKASTINPNHWAVHKWLAILISALGDHISSKEKIANAFKIKDHAVKAN 120
Query: 131 ELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190
ELKP+D+TTL +LG WCF I+ + W +R A+A+F T PTS+Y+EAL YFLEA K P
Sbjct: 121 ELKPNDATTLHLLGRWCFSISSIGWIERTAASALFGTPPTSTYDEALTYFLEAYKCDPTN 180
Query: 191 YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+N L G TY L++ +A + ++ K + D+
Sbjct: 181 I-RNALFTGDTYAALKDNAKAKEFYKIAAAIEPKSEFDK 218
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9DCV4 | RMD1_MOUSE | No assigned EC number | 0.4093 | 0.6625 | 0.7016 | yes | N/A |
| Q96DB5 | RMD1_HUMAN | No assigned EC number | 0.4186 | 0.6625 | 0.6815 | yes | N/A |
| Q4G069 | RMD1_RAT | No assigned EC number | 0.4093 | 0.6625 | 0.6903 | yes | N/A |
| Q5R8E4 | RMD1_PONAB | No assigned EC number | 0.4186 | 0.6625 | 0.6815 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 323 | |||
| COG4105 | 254 | COG4105, ComL, DNA uptake lipoprotein [General fun | 8e-05 | |
| TIGR03302 | 235 | TIGR03302, OM_YfiO, outer membrane assembly lipopr | 0.003 |
| >gnl|CDD|226590 COG4105, ComL, DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 30/185 (16%)
Query: 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAA 212
Y + L +YEEA+KYF + +HP + Q L L Y + Y+ A
Sbjct: 37 LYNEGLTE-----LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLAL 91
Query: 213 YYLEM-TKNYPVKQDKDQCFEITDMPWY---------QRKIANAI--FDTL----PTSSY 256
Y++ + YP + D + + + ++ Q A F L P S Y
Sbjct: 92 AYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151
Query: 257 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA-YYLEMTKNYP---AVQEATK 312
K + L + + + + Y++ Y A + E+ +NYP AV+EA
Sbjct: 152 APDAKARIVKLNDA-LAGHE--MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALA 208
Query: 313 LLEKA 317
LE+A
Sbjct: 209 RLEEA 213
|
Length = 254 |
| >gnl|CDD|234164 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.003
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 43/180 (23%)
Query: 173 YEEALKYFLEAEKQHPLFYS----QNVLMLGKTYMRLENYEQA-AYYLEMTKNYPVKQDK 227
Y EA+KYF E ++P +S Q L L Y + +Y +A A + +P
Sbjct: 49 YTEAIKYFEALESRYP--FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP--NHP 104
Query: 228 DQCFEITDMPWYQRKIANAIFDTLP-----TSSYEEALKYFLEAEKQHP----------- 271
D + + ++ + ++ EA + F E +++P
Sbjct: 105 -------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR 157
Query: 272 LFYSQNVL-----MLGKTYMRLENYEQAA-YYLEMTKNYP---AVQEATKLLEKAKSYLK 322
+ Y +N L + + Y++ Y A + + +NYP A +EA L ++YLK
Sbjct: 158 MDYLRNRLAGKELYVARFYLKRGAYVAAINRFQTVVENYPDTPATEEALARL--VEAYLK 215
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795) [Protein fate, Protein and peptide secretion and trafficking]. Length = 235 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| KOG4626|consensus | 966 | 99.97 | ||
| KOG4626|consensus | 966 | 99.97 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| KOG1126|consensus | 638 | 99.92 | ||
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG1126|consensus | 638 | 99.89 | ||
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| KOG0624|consensus | 504 | 99.88 | ||
| KOG0547|consensus | 606 | 99.88 | ||
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.87 | |
| KOG0550|consensus | 486 | 99.86 | ||
| KOG0547|consensus | 606 | 99.86 | ||
| KOG1155|consensus | 559 | 99.86 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.86 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.86 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.86 | |
| KOG1173|consensus | 611 | 99.85 | ||
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| KOG1125|consensus | 579 | 99.84 | ||
| KOG1155|consensus | 559 | 99.81 | ||
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| KOG1173|consensus | 611 | 99.78 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.77 | |
| KOG2076|consensus | 895 | 99.77 | ||
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.74 | |
| KOG1174|consensus | 564 | 99.74 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.74 | |
| KOG2002|consensus | 1018 | 99.74 | ||
| KOG1129|consensus | 478 | 99.73 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.72 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.71 | |
| KOG2003|consensus | 840 | 99.69 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| KOG1129|consensus | 478 | 99.68 | ||
| KOG2002|consensus | 1018 | 99.68 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.67 | |
| KOG0548|consensus | 539 | 99.67 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.66 | |
| KOG1840|consensus | 508 | 99.64 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.62 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.61 | |
| KOG4162|consensus | 799 | 99.6 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.6 | |
| KOG1125|consensus | 579 | 99.59 | ||
| KOG2003|consensus | 840 | 99.58 | ||
| KOG0550|consensus | 486 | 99.58 | ||
| KOG0624|consensus | 504 | 99.58 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.56 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.56 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.54 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.53 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.51 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.51 | |
| KOG1156|consensus | 700 | 99.5 | ||
| KOG1174|consensus | 564 | 99.49 | ||
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.47 | |
| KOG2076|consensus | 895 | 99.46 | ||
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.45 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.45 | |
| KOG0495|consensus | 913 | 99.44 | ||
| KOG1840|consensus | 508 | 99.44 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.44 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.42 | |
| KOG0548|consensus | 539 | 99.41 | ||
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.41 | |
| KOG0553|consensus | 304 | 99.4 | ||
| KOG0553|consensus | 304 | 99.38 | ||
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.36 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.35 | |
| KOG1127|consensus | 1238 | 99.33 | ||
| KOG3060|consensus | 289 | 99.32 | ||
| KOG4162|consensus | 799 | 99.32 | ||
| KOG3060|consensus | 289 | 99.32 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.31 | |
| KOG0495|consensus | 913 | 99.3 | ||
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.29 | |
| KOG1156|consensus | 700 | 99.26 | ||
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.25 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.25 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.25 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.23 | |
| KOG1130|consensus | 639 | 99.21 | ||
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.21 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.21 | |
| KOG1127|consensus | 1238 | 99.19 | ||
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.19 | |
| KOG1128|consensus | 777 | 99.19 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.19 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.19 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.17 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.17 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.15 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.13 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.12 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.11 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 99.11 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.11 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.1 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.09 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.09 | |
| KOG2376|consensus | 652 | 99.08 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.07 | |
| KOG1130|consensus | 639 | 99.06 | ||
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.03 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 99.02 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.01 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.0 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.99 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.99 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.99 | |
| KOG4340|consensus | 459 | 98.99 | ||
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.98 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.97 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.96 | |
| KOG1128|consensus | 777 | 98.96 | ||
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.95 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.93 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.91 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.84 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.84 | |
| KOG3785|consensus | 557 | 98.84 | ||
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.83 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.82 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.82 | |
| KOG0543|consensus | 397 | 98.81 | ||
| KOG4648|consensus | 536 | 98.81 | ||
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.77 | |
| KOG1915|consensus | 677 | 98.77 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.76 | |
| KOG0543|consensus | 397 | 98.74 | ||
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.72 | |
| KOG3081|consensus | 299 | 98.71 | ||
| KOG1941|consensus | 518 | 98.71 | ||
| KOG4340|consensus | 459 | 98.66 | ||
| KOG4234|consensus | 271 | 98.64 | ||
| KOG2376|consensus | 652 | 98.62 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.62 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.61 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.57 | |
| KOG3785|consensus | 557 | 98.56 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.56 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.56 | |
| KOG1915|consensus | 677 | 98.55 | ||
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.52 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.5 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.48 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.45 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.43 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.4 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.39 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.38 | |
| KOG4648|consensus | 536 | 98.36 | ||
| KOG4234|consensus | 271 | 98.33 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.33 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.32 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.31 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.28 | |
| KOG4642|consensus | 284 | 98.25 | ||
| KOG4642|consensus | 284 | 98.19 | ||
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.12 | |
| KOG4555|consensus | 175 | 98.07 | ||
| KOG1941|consensus | 518 | 98.04 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.02 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.02 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.01 | |
| KOG4555|consensus | 175 | 98.01 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.01 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.99 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.99 | |
| KOG2047|consensus | 835 | 97.95 | ||
| KOG2053|consensus | 932 | 97.94 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.9 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.89 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.89 | |
| KOG0376|consensus | 476 | 97.87 | ||
| KOG0545|consensus | 329 | 97.87 | ||
| KOG1070|consensus | 1710 | 97.87 | ||
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.87 | |
| KOG3081|consensus | 299 | 97.85 | ||
| KOG2053|consensus | 932 | 97.83 | ||
| KOG2610|consensus | 491 | 97.79 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.79 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.77 | |
| KOG2796|consensus | 366 | 97.75 | ||
| KOG2047|consensus | 835 | 97.74 | ||
| KOG1070|consensus | 1710 | 97.72 | ||
| KOG3617|consensus | 1416 | 97.69 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.6 | |
| KOG0376|consensus | 476 | 97.6 | ||
| KOG0530|consensus | 318 | 97.58 | ||
| KOG0551|consensus | 390 | 97.57 | ||
| KOG3617|consensus | 1416 | 97.57 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.54 | |
| KOG2796|consensus | 366 | 97.53 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.52 | |
| KOG0551|consensus | 390 | 97.51 | ||
| KOG1586|consensus | 288 | 97.5 | ||
| KOG2471|consensus | 696 | 97.49 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.46 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.42 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 97.4 | |
| KOG2610|consensus | 491 | 97.35 | ||
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.35 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.34 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.32 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.32 | |
| KOG0545|consensus | 329 | 97.31 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.3 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.3 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.27 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.26 | |
| KOG1550|consensus | 552 | 97.26 | ||
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.26 | |
| KOG1308|consensus | 377 | 97.25 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.19 | |
| KOG1586|consensus | 288 | 97.14 | ||
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.11 | |
| KOG1585|consensus | 308 | 97.11 | ||
| KOG1308|consensus | 377 | 97.1 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.09 | |
| KOG1550|consensus | 552 | 97.05 | ||
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.03 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.03 | |
| KOG1585|consensus | 308 | 96.98 | ||
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.92 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.91 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.8 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.8 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.7 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.62 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.57 | |
| KOG3824|consensus | 472 | 96.5 | ||
| KOG2471|consensus | 696 | 96.48 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.48 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.43 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.33 | |
| KOG3364|consensus | 149 | 96.08 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.07 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.03 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.03 | |
| KOG4507|consensus | 886 | 95.93 | ||
| KOG3364|consensus | 149 | 95.87 | ||
| KOG4507|consensus | 886 | 95.86 | ||
| KOG3824|consensus | 472 | 95.82 | ||
| KOG0529|consensus | 421 | 95.8 | ||
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.77 | |
| KOG1310|consensus | 758 | 95.76 | ||
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.76 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.69 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.68 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.53 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.49 | |
| KOG1914|consensus | 656 | 95.4 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 95.23 | |
| KOG2396|consensus | 568 | 95.2 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.2 | |
| KOG0985|consensus | 1666 | 94.99 | ||
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.96 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 94.93 | |
| KOG3616|consensus | 1636 | 94.92 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.91 | |
| KOG2300|consensus | 629 | 94.7 | ||
| KOG3616|consensus | 1636 | 94.57 | ||
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.38 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.37 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.25 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.18 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.12 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 94.07 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.86 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.85 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 93.81 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.78 | |
| KOG2300|consensus | 629 | 93.75 | ||
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.73 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.49 | |
| KOG1310|consensus | 758 | 93.42 | ||
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.42 | |
| KOG1258|consensus | 577 | 93.24 | ||
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.15 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 92.94 | |
| KOG2422|consensus | 665 | 92.73 | ||
| KOG1839|consensus | 1236 | 92.66 | ||
| KOG3783|consensus | 546 | 92.62 | ||
| KOG0890|consensus | 2382 | 92.42 | ||
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.34 | |
| KOG2396|consensus | 568 | 92.3 | ||
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 91.5 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 91.44 | |
| KOG4814|consensus | 872 | 91.4 | ||
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 91.36 | |
| PHA02537 | 230 | M terminase endonuclease subunit; Provisional | 91.12 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.86 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 90.34 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.32 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 90.22 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 89.85 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 89.85 | |
| KOG0530|consensus | 318 | 89.54 | ||
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 89.29 | |
| PF12854 | 34 | PPR_1: PPR repeat | 88.72 | |
| KOG1839|consensus | 1236 | 88.59 | ||
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.11 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.11 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 88.06 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 88.05 | |
| PF12309 | 371 | KBP_C: KIF-1 binding protein C terminal; InterPro: | 87.94 | |
| KOG4814|consensus | 872 | 87.89 | ||
| KOG1258|consensus | 577 | 87.78 | ||
| COG4259 | 121 | Uncharacterized protein conserved in bacteria [Fun | 87.46 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.09 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 87.07 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 86.88 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.59 | |
| cd02683 | 77 | MIT_1 MIT: domain contained within Microtubule Int | 86.28 | |
| KOG1464|consensus | 440 | 86.21 | ||
| KOG2581|consensus | 493 | 85.86 | ||
| KOG2422|consensus | 665 | 85.04 | ||
| KOG2041|consensus | 1189 | 84.9 | ||
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 84.84 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 84.81 | |
| KOG0890|consensus | 2382 | 84.74 | ||
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.31 | |
| KOG2114|consensus | 933 | 84.23 | ||
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 84.14 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 83.88 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 83.56 | |
| KOG4014|consensus | 248 | 83.39 | ||
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.21 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 82.92 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.85 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 82.28 | |
| KOG1538|consensus | 1081 | 82.19 | ||
| PF12854 | 34 | PPR_1: PPR repeat | 81.65 | |
| KOG0529|consensus | 421 | 80.66 | ||
| KOG4151|consensus | 748 | 80.65 | ||
| KOG3807|consensus | 556 | 80.58 | ||
| PF12753 | 404 | Nro1: Nuclear pore complex subunit Nro1; InterPro: | 80.39 | |
| KOG4014|consensus | 248 | 80.11 | ||
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 80.02 |
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=218.78 Aligned_cols=288 Identities=16% Similarity=0.169 Sum_probs=214.2
Q ss_pred hhhcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 5 EAAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 5 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
.+++..|.-.+.+-..|+.+.+.|++++|+..++.+ ..|++++++..+|-++...|+... |.++|
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~-------------a~~~~ 173 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLEL-------------AVQCF 173 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcc-------------cHHHH
Confidence 446667777777777999999999999999999987 599999999999999999887655 44455
Q ss_pred HhhccCCCCcHHHHHHHHHHHHHhhcccchHHH------------------------HHhHHHHHHHHHHHHccCCCChh
Q psy11738 83 YNALPQHEDHYAIHKWLAVILNEKATLEGTKAR------------------------IQQLETIKHHMNKAIELKPDDST 138 (323)
Q Consensus 83 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~a~~~~~~al~l~p~~~~ 138 (323)
..++.++|++..++..+|.++-.+|++.++... .++...|+.+|++|++++|+-+.
T Consensus 174 ~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d 253 (966)
T KOG4626|consen 174 FEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD 253 (966)
T ss_pred HHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH
Confidence 555555555555555555554444444433221 13334899999999999999999
Q ss_pred HHHHHhhHHHHhcCCcHHHHHHHHHh---------hcC-----CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11738 139 TLFMLGMWCFEITDMPWYQRKIANAI---------FDT-----LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204 (323)
Q Consensus 139 ~~~~lg~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~ 204 (323)
+|++||.+|-..+.+......+..++ +++ .+.|..+-||..|+++++++|++ +.++.+||.++..
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanALkd 332 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLANALKD 332 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHHHHh
Confidence 99999999999887744333322221 111 26788999999999999999998 7999999999999
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhH-----------HH-------------HHHHHHhhccCCCCcHHHHH
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPW-----------YQ-------------RKIANAIFDTLPTSSYEEAL 260 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-----------~~-------------~~~a~~~~~~~~~~~~~~Al 260 (323)
.|+.++|..+|++++.+.|++.+... .++.+.. |. ..++. +++ ..|++++|+
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~-NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~-i~k--qqgnl~~Ai 408 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMN-NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS-IYK--QQGNLDDAI 408 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHH-HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH-HHH--hcccHHHHH
Confidence 99999999999999999999976543 1110000 00 00111 111 257888888
Q ss_pred HHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh-hHHH
Q psy11738 261 KYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV-QEAT 311 (323)
Q Consensus 261 ~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~ 311 (323)
.+|++++.+.|.+ ++++.++|.+|..+|+.+.|+.+|++|+.++|. .|+.
T Consensus 409 ~~YkealrI~P~f-Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 409 MCYKEALRIKPTF-ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred HHHHHHHhcCchH-HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 8888888888888 788888888888888888888888888888776 4443
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=223.71 Aligned_cols=253 Identities=16% Similarity=0.102 Sum_probs=212.2
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc-------------------
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS------------------- 67 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~------------------- 67 (323)
.+|.-+..+-..|-.+..+|+...||..++++ .+|+..++++.||.+|..++.+..+..
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl 292 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL 292 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce
Confidence 33433444444555666677777777777776 477777777777777777776553210
Q ss_pred --HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 68 --DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 68 --~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
.-.-+|.++-|+..|++++++.|+.++++.++|..+-..|+.. +|..+|.+++.+.|+++++.++||.
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~----------ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT----------EAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH----------HHHHHHHHHHHhCCccHHHHHHHHH
Confidence 0012566788999999999999999999999999999999888 8999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 146 WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++.++|.+ ++|...|+++++..|+. +.++.+||.+|-++|++++|+.+|+.++++.|+.
T Consensus 363 i~~E~~~~--------------------e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 363 IYREQGKI--------------------EEATRLYLKALEVFPEF-AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHHHhccc--------------------hHHHHHHHHHHhhChhh-hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 99999877 99999999999999997 7999999999999999999999999999999997
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
.+.. ++++...+. +|+.+.|++.|.+|+.++|.+ ++++.+||.+|...|+..+|+..|+.+|++.
T Consensus 422 Ada~----~NmGnt~ke----------~g~v~~A~q~y~rAI~~nPt~-AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 422 ADAL----SNMGNTYKE----------MGDVSAAIQCYTRAIQINPTF-AEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHH----HhcchHHHH----------hhhHHHHHHHHHHHHhcCcHH-HHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 7643 333333222 688999999999999999998 8999999999999999999999999999998
Q ss_pred Ch
Q psy11738 306 AV 307 (323)
Q Consensus 306 ~~ 307 (323)
|+
T Consensus 487 PD 488 (966)
T KOG4626|consen 487 PD 488 (966)
T ss_pred CC
Confidence 88
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-25 Score=209.86 Aligned_cols=245 Identities=14% Similarity=0.091 Sum_probs=209.4
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|.....+...|..++..|++++|+..++++ .+|.+...+..+|.++...|+ +++|+.++++++++
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~-------------~~eA~~~~~~al~~ 394 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD-------------PDKAEEDFDKALKL 394 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHh
Confidence 445555677788888899999999999987 589999999999999988774 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|+++.+++.+|.++...|++. +|+.+|+++++++|++..++..+|.+++..|++
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~--------------- 449 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFA----------QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI--------------- 449 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH---------------
Confidence 9999999999999999999998 899999999999999999999999999988755
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|+..|+++++..|++ +.++..+|.++...|++++|+..|++++.++|....... ....++.. +..++
T Consensus 450 -----~eA~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~---~~~~l~~~--a~~~~ 518 (615)
T TIGR00990 450 -----ASSMATFRRCKKNFPEA-PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM---NVLPLINK--ALALF 518 (615)
T ss_pred -----HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc---cHHHHHHH--HHHHH
Confidence 99999999999999998 799999999999999999999999999999987643221 00111111 11122
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
. ..+++++|+..|.+++.++|++ ..++..+|.++..+|++++|+.+|++++++.+.
T Consensus 519 ~--~~~~~~eA~~~~~kAl~l~p~~-~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 519 Q--WKQDFIEAENLCEKALIIDPEC-DIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred H--HhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 2 1478999999999999999998 688999999999999999999999999999765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-24 Score=202.34 Aligned_cols=248 Identities=12% Similarity=0.050 Sum_probs=210.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc------------------------
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS------------------------ 67 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~------------------------ 67 (323)
...++..|..++..|++++|+..+.++ .+|+++.+++++|.+|..+|++..+..
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL 239 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345667788888888888888888887 588889999999999888887532200
Q ss_pred ------------------------------------------------HH---------------HHHHHHHHHHHHHHh
Q psy11738 68 ------------------------------------------------DA---------------DKKQLILSAYFLVYN 84 (323)
Q Consensus 68 ------------------------------------------------~~---------------~~~~~~~~A~~~~~~ 84 (323)
++ ...+.+++|+..|++
T Consensus 240 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~ 319 (615)
T TIGR00990 240 KKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK 319 (615)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 00 001367889999999
Q ss_pred hccC---CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHH
Q psy11738 85 ALPQ---HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161 (323)
Q Consensus 85 al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 161 (323)
+++. .|..+.++..+|.++..+|++. +|+..|+++++++|++..++..+|.++...|++
T Consensus 320 al~~~~~~~~~a~a~~~lg~~~~~~g~~~----------eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~-------- 381 (615)
T TIGR00990 320 ALDLGKLGEKEAIALNLRGTFKCLKGKHL----------EALADLSKSIELDPRVTQSYIKRASMNLELGDP-------- 381 (615)
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH--------
Confidence 9976 4888889999999999999998 899999999999999999999999999887655
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHH
Q psy11738 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQR 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 241 (323)
++|+..|+++++++|++ +.+++.+|.++...|++++|+.+|++++.++|.+.....
T Consensus 382 ------------~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~----------- 437 (615)
T TIGR00990 382 ------------DKAEEDFDKALKLNSED-PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI----------- 437 (615)
T ss_pred ------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH-----------
Confidence 99999999999999998 699999999999999999999999999999998754321
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 242 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 242 ~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++..++. .|++++|+..|.+++...|++ +..+..+|.++..+|++++|+.+|++++++.|.
T Consensus 438 ~la~~~~~---~g~~~eA~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 438 QLGVTQYK---EGSIASSMATFRRCKKNFPEA-PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHH---CCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 12222232 789999999999999999998 799999999999999999999999999999875
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=192.29 Aligned_cols=249 Identities=16% Similarity=0.134 Sum_probs=202.9
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCC-----------C-CcHHH---------HH
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSS-----------S-LSDAD---------KK 72 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~-----------~-~~~~~---------~~ 72 (323)
-+.+.|..+|+.++|++|..+++.+ ..|-.++..-.+..+++++.+.-. + ..|+. -+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence 3567899999999999999888776 244433333333333333332110 0 01111 25
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
+..+.|+.+|++|+.+||.++-+|..+|.-+.....++ .|..+|.+|+..+|.+..+||.+|.+|..++.
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d----------~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFD----------KAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK 504 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHH----------hHHHHHHhhhcCCchhhHHHHhhhhheeccch
Confidence 56788999999999999999999998888888777777 89999999999999999999999999999865
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
+ +.|.-+|++|++++|.+ ......+|.++.+.|+.++|+.+|++|+.++|.+.-.++..
T Consensus 505 ~--------------------e~Ae~~fqkA~~INP~n-svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 505 L--------------------EFAEFHFQKAVEINPSN-SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred h--------------------hHHHHHHHhhhcCCccc-hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 5 99999999999999998 68899999999999999999999999999999997554311
Q ss_pred hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
+..++. .+++++|+..+++...+-|+. ...++.+|.+|..+|+.+.|+..|.-|.+++|....
T Consensus 564 -----------~~il~~---~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 -----------ASILFS---LGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred -----------HHHHHh---hcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 111222 689999999999999999998 789999999999999999999999999999988655
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=183.83 Aligned_cols=123 Identities=16% Similarity=0.107 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHH----HHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHH
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ----AAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIAN 245 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~ 245 (323)
.|++++|+..|.++++++|++ +.++..+|.+|...|++++ |+..|++++.++|++..... . ++.
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~-~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~-~----------lg~ 292 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDG-AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVT-L----------YAD 292 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHH-H----------HHH
Confidence 578888999999999988887 6888889999999999885 78899999999888654322 1 111
Q ss_pred HhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 246 AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 246 ~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
.+.. .|++++|+..+++++.++|++ +.++..+|.+|...|++++|+..|+++++..|..
T Consensus 293 ~l~~---~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 293 ALIR---TGQNEKAIPLLQQSLATHPDL-PYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHH---CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 1221 577888888888888888877 6777778888888888888888888877776663
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-22 Score=176.88 Aligned_cols=257 Identities=16% Similarity=0.158 Sum_probs=205.4
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHH------------------HHHHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDAD------------------KKQLILS 77 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~------------------~~~~~~~ 77 (323)
|.++-....+=+.++|+..+.++ ..++..=++-.+|++|++++++..+....+ -..++++
T Consensus 323 ~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 323 LGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 45555666677889999999997 466777778899999999998876421000 0111111
Q ss_pred H--H-HHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 78 A--Y-FLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 78 A--~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
- + .+.+-.+..+|+.|+.|-.+|.|+..+++.+ .|+++|++|+.+||...-+|-.+|.=+....++
T Consensus 403 ~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~----------~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~- 471 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD----------TAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF- 471 (638)
T ss_pred hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH----------HHHHHHHHhhccCCccchhhhhcCChhhhhHHH-
Confidence 1 1 2345567889999999999999999999988 899999999999999999999999766665444
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
+.|..+|++|+.++|+++ .+|+.||.+|.++++++.|.-+|++|+.++|.+....+. ++
T Consensus 472 -------------------d~a~~~fr~Al~~~~rhY-nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~-~g 530 (638)
T KOG1126|consen 472 -------------------DKAMKSFRKALGVDPRHY-NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCH-IG 530 (638)
T ss_pred -------------------HhHHHHHHhhhcCCchhh-HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhh-hh
Confidence 999999999999999996 999999999999999999999999999999998654331 00
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH-HH
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT-KL 313 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 313 (323)
.. +. ..++.++|+..|++|+.++|.+ +...+..|.++..++++++|+..+++..++.|.+-.+ -+
T Consensus 531 ---~~-------~~---~~k~~d~AL~~~~~A~~ld~kn-~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 531 ---RI-------QH---QLKRKDKALQLYEKAIHLDPKN-PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred ---HH-------HH---HhhhhhHHHHHHHHHHhcCCCC-chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 11 11 1578899999999999999999 7889999999999999999999999999998886665 55
Q ss_pred HHHHHhh
Q psy11738 314 LEKAKSY 320 (323)
Q Consensus 314 l~~~~~~ 320 (323)
+-++.+.
T Consensus 597 lgki~k~ 603 (638)
T KOG1126|consen 597 LGKIYKR 603 (638)
T ss_pred HHHHHHH
Confidence 5555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-21 Score=182.05 Aligned_cols=250 Identities=13% Similarity=0.088 Sum_probs=188.3
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..|+........|..+...|++++|+..++++ .+|+++.++..++.++...|+. ++|+..+.+++
T Consensus 105 ~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~-------------~eA~~~~~~~~ 171 (656)
T PRK15174 105 VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKE-------------LQAISLARTQA 171 (656)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCh-------------HHHHHHHHHHH
Confidence 44555566666677777777777777777766 3677777777777777766654 44555555555
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHH-------------------------HHHhHHHHHHHHHHHHccCCCChhHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKA-------------------------RIQQLETIKHHMNKAIELKPDDSTTLF 141 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~a~~~~~~al~l~p~~~~~~~ 141 (323)
..+|+++.++..++. +...|++..+.. ..+...+|+..+.++++++|+++.++.
T Consensus 172 ~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 172 QEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred HhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 555555555444322 333333322110 112334788999999999999999999
Q ss_pred HHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHH----HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 142 MLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE----EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 142 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
.+|.++...|++ + +|+..|+++++++|++ +.++..+|.++...|++++|+.++++
T Consensus 251 ~Lg~~l~~~G~~--------------------~eA~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 251 SLGLAYYQSGRS--------------------REAKLQAAEHWRHALQFNSDN-VRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred HHHHHHHHcCCc--------------------hhhHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998766 5 4899999999999998 69999999999999999999999999
Q ss_pred HhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHH
Q psy11738 218 TKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY 297 (323)
Q Consensus 218 al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 297 (323)
++.++|.+..... . ++..+.. .|++++|+..|.+++..+|+. ...+..+|.++...|++++|+.+
T Consensus 310 al~l~P~~~~a~~-~----------La~~l~~---~G~~~eA~~~l~~al~~~P~~-~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 310 SLATHPDLPYVRA-M----------YARALRQ---VGQYTAASDEFVQLAREKGVT-SKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHHhCCCCHHHHH-H----------HHHHHHH---CCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999765422 1 1222222 689999999999999999987 56677789999999999999999
Q ss_pred HHHhhCCCChh
Q psy11738 298 LEMTKNYPAVQ 308 (323)
Q Consensus 298 ~~~al~~~~~~ 308 (323)
|++++++.|..
T Consensus 375 l~~al~~~P~~ 385 (656)
T PRK15174 375 FEHYIQARASH 385 (656)
T ss_pred HHHHHHhChhh
Confidence 99999998773
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=157.05 Aligned_cols=281 Identities=15% Similarity=0.136 Sum_probs=206.9
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
+.+.+.+++.-++.|..++..|++.+|+..|..+ .+|++-.++++.|.+|..+|..-. |+..+.+
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~-------------al~Dl~r 97 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKA-------------ALQDLSR 97 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCcc-------------chhhHHH
Confidence 5677888899999999999999999999999998 599999999999999999997654 4555555
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchH-------------------------------------HHH--HhHHHHHHH
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTK-------------------------------------ARI--QQLETIKHH 125 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~--~~~~~a~~~ 125 (323)
.+++.|+...+....|.++..+|+++.+. ... ++...+++.
T Consensus 98 VlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 98 VLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred HHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 55555555555555555555555544110 000 233345566
Q ss_pred HHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc
Q psy11738 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 205 (323)
Q Consensus 126 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~ 205 (323)
..+.+++.|-+...+...+.+|...|+. ..||..++.+-++..++ ...++.++..++..
T Consensus 178 i~~llEi~~Wda~l~~~Rakc~i~~~e~--------------------k~AI~Dlk~askLs~Dn-Te~~ykis~L~Y~v 236 (504)
T KOG0624|consen 178 ITHLLEIQPWDASLRQARAKCYIAEGEP--------------------KKAIHDLKQASKLSQDN-TEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHhcCcH--------------------HHHHHHHHHHHhccccc-hHHHHHHHHHHHhh
Confidence 6777777777777777777776666655 89999999999998887 58899999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhhhh----------------hhcchhHHHHH-HHHHhhcc------------------
Q psy11738 206 ENYEQAAYYLEMTKNYPVKQDKDQCF----------------EITDMPWYQRK-IANAIFDT------------------ 250 (323)
Q Consensus 206 g~~~~A~~~~~~al~~~~~~~~~~~~----------------~~~~~~~~~~~-~a~~~~~~------------------ 250 (323)
|+.+.++...+..++++|++..-.-+ .+....|.... ....++..
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 99999999999999999988421000 00000110000 00001111
Q ss_pred -CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh-hHHHHHHHHHHhhhc
Q psy11738 251 -LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV-QEATKLLEKAKSYLK 322 (323)
Q Consensus 251 -~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~~~l~~~~~~~~ 322 (323)
...+++-+||..|.+++.++|++ ..++...+.+|+...+|+.|+..|++|.+++|+ ..+++.+.+++.+.+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~d-v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkk 389 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDD-VQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKK 389 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 12477999999999999999998 899999999999999999999999999999776 455699999988764
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-21 Score=165.50 Aligned_cols=240 Identities=11% Similarity=0.084 Sum_probs=206.9
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
++.+...|...+-.|++-.|...++.+ .+|.++..++++|-+|....+. ++...+|.+|..+||+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~-------------~~~~~~F~~A~~ldp~ 392 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS-------------EKMWKDFNKAEDLDPE 392 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc-------------HHHHHHHHHHHhcCCC
Confidence 455677888888899999999999887 4888888899999999776643 5579999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
|++.|++.|.++..+++++ +|+..|++++.++|++..++..++-..|+.+.+
T Consensus 393 n~dvYyHRgQm~flL~q~e----------~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~------------------ 444 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYE----------EAIADFQKAISLDPENAYAYIQLCCALYRQHKI------------------ 444 (606)
T ss_pred CCchhHhHHHHHHHHHHHH----------HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHH------------------
Confidence 9999999999999999999 899999999999999999999999998888755
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
+++...|+.+.+..|+. +.++...|.++..+++|++|++.|.+++.+.|......+ +-.....+. ..+++
T Consensus 445 --~~~m~~Fee~kkkFP~~-~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v---~~~plV~Ka--~l~~q-- 514 (606)
T KOG0547|consen 445 --AESMKTFEEAKKKFPNC-PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV---NAAPLVHKA--LLVLQ-- 514 (606)
T ss_pred --HHHHHHHHHHHHhCCCC-chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc---cchhhhhhh--Hhhhc--
Confidence 99999999999999997 799999999999999999999999999999988543322 111122222 12233
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
..+++..|+..+.+|++++|.. ..++..||.+-+.+|+.++|++.|++++.+.
T Consensus 515 wk~d~~~a~~Ll~KA~e~Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 515 WKEDINQAENLLRKAIELDPKC-EQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hhhhHHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3689999999999999999997 7999999999999999999999999998884
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-20 Score=186.60 Aligned_cols=261 Identities=12% Similarity=-0.001 Sum_probs=191.2
Q ss_pred HhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHH
Q psy11738 19 KKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIH 96 (323)
Q Consensus 19 ~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 96 (323)
..|..++..|++++|+..++++ .+|++++++..+|.+|...|+ +++|+.+++++++++|++....
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~-------------~~eA~~~l~~Al~~~p~~~~~~ 340 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD-------------RARAVAQFEKALALDPHSSNRD 340 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCccchh
Confidence 3477888899999999999997 599999999999999998885 4679999999999999876432
Q ss_pred --------------HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH---
Q psy11738 97 --------------KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK--- 159 (323)
Q Consensus 97 --------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~--- 159 (323)
...|.++...|++. +|+.+|+++++++|+++.++..+|.++...|++......
T Consensus 341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~----------eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 341 KWESLLKVNRYWLLIQQGDAALKANNLA----------QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12344555556555 566666666666666666666666666655544211100
Q ss_pred --------------HHHHhh-------------------------------------c--CCCCCCHHHHHHHHHHHHhc
Q psy11738 160 --------------IANAIF-------------------------------------D--TLPTSSYEEALKYFLEAEKQ 186 (323)
Q Consensus 160 --------------~~~~~~-------------------------------------~--~~~~~~~~~A~~~~~~al~~ 186 (323)
+...+. + ....+++++|+..|++++++
T Consensus 411 aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000000 0 01358999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh---hc-------------ch--------------
Q psy11738 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE---IT-------------DM-------------- 236 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~-------------~~-------------- 236 (323)
+|++ +.+++.+|.+|...|++++|+..+++++..+|.+....... +. .+
T Consensus 491 ~P~~-~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 491 DPGS-VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ 569 (1157)
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH
Confidence 9998 69999999999999999999999999999999886543200 00 00
Q ss_pred ---------------------------------hHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHH
Q psy11738 237 ---------------------------------PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 283 (323)
Q Consensus 237 ---------------------------------~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~ 283 (323)
......++..+. ..|++++|+..|++++..+|++ +.++..+|.
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~---~~g~~~~A~~~y~~al~~~P~~-~~a~~~la~ 645 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQ---QRGDYAAARAAYQRVLTREPGN-ADARLGLIE 645 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence 000011111111 2588999999999999999998 788999999
Q ss_pred HHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 284 TYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 284 ~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+|...|++++|+.+|++++...|.
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCC
Confidence 999999999999999999888765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-20 Score=181.57 Aligned_cols=271 Identities=17% Similarity=0.123 Sum_probs=177.0
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC------------c--------
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL------------S-------- 67 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~------------~-------- 67 (323)
.|......+..+..+...|++++|+..++++ ..|.+++++..+|.+|...|++.... .
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 642 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3445555666777777777777777777776 46777777777777777766543210 0
Q ss_pred -HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 68 -DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 68 -~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
.....+++++|+..++++++.+|++..++..++.++...|++. +|...++++....|.++..+..+|.+
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~ 712 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE----------SAKKIAKSLQKQHPKAALGFELEGDL 712 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCcCChHHHHHHHHH
Confidence 0001223445555555555555555555555555555555554 45555555555556666666666666
Q ss_pred HHHhcCCcHHHHHHHHHhhcC-------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHH
Q psy11738 147 CFEITDMPWYQRKIANAIFDT-------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 213 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~ 213 (323)
+...|++......+...+... ...|++++|+..++++++.+|++ ..+++.+|.+|..+|++++|+.
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND-AVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCcCHHHHHH
Confidence 666665533222222211110 13467788888888888888887 5788888888888888888888
Q ss_pred HHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHH
Q psy11738 214 YLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ 293 (323)
Q Consensus 214 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~ 293 (323)
+|++++...|.+..... .+++. .. ..++ .+|+..+++++.+.|++ +..+..+|.+|...|++++
T Consensus 792 ~~~~~~~~~p~~~~~~~----~l~~~-------~~---~~~~-~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 792 HYRTVVKKAPDNAVVLN----NLAWL-------YL---ELKD-PRALEYAEKALKLAPNI-PAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHHHHhCCCCHHHHH----HHHHH-------HH---hcCc-HHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHcCCHHH
Confidence 88888888776543211 11222 11 1455 77999999999999988 7888899999999999999
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|+.+|+++++++|.
T Consensus 856 A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 856 ALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999999999876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-20 Score=166.15 Aligned_cols=258 Identities=14% Similarity=0.013 Sum_probs=175.6
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
....+..|..+...|++++|+..+.++ .+|++++++..+|.++...|++ ++|+..+++++...+.
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------------~~A~~~~~~~l~~~~~ 101 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEV-------------DRAIRIHQNLLSRPDL 101 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcH-------------HHHHHHHHHHhcCCCC
Confidence 344456677777778888888888776 4777777888888888777754 3355555555543221
Q ss_pred c----HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc-
Q psy11738 92 H----YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD- 166 (323)
Q Consensus 92 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~- 166 (323)
. ..++..+|.++...|++. +|...|.++++.+|.+..++..++.++...|++......+...+..
T Consensus 102 ~~~~~~~~~~~La~~~~~~g~~~----------~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 102 TREQRLLALQELGQDYLKAGLLD----------RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 1 133445555555555555 4555555555555555555555555555555442211111100000
Q ss_pred ------------------CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 167 ------------------TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 167 ------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
....+++++|+..|+++++.+|+. ..+++.+|.+|...|++++|++++++++..+|.+...
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 012356799999999999999997 6899999999999999999999999999987765322
Q ss_pred hhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 229 QCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 229 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
... .++..+.. .|++++|+..+.+++..+|+. . .+..+|.++...|++++|+..++++++..|+.
T Consensus 251 ~~~----------~l~~~~~~---~g~~~~A~~~l~~~~~~~p~~-~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 251 VLP----------KLMECYQA---LGDEAEGLEFLRRALEEYPGA-D-LLLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHH----------HHHHHHHH---cCCHHHHHHHHHHHHHhCCCc-h-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 111 12222222 689999999999999999986 3 45899999999999999999999999998876
Q ss_pred HH
Q psy11738 309 EA 310 (323)
Q Consensus 309 ~~ 310 (323)
..
T Consensus 316 ~~ 317 (389)
T PRK11788 316 RG 317 (389)
T ss_pred HH
Confidence 54
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-20 Score=174.14 Aligned_cols=199 Identities=14% Similarity=0.013 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
+.+++|+.+++++++++|+++.++..+|.++..++..... ...+...+|...++++++++|+++.++..+|.++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~-~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIF-DKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc-ccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4678999999999999999999999999988776653211 112334589999999999999999999999999988876
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
+ ++|+.+|+++++++|++ +.+++.+|.++...|++++|+.++++++.++|.+......
T Consensus 354 ~--------------------~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~- 411 (553)
T PRK12370 354 Y--------------------IVGSLLFKQANLLSPIS-ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT- 411 (553)
T ss_pred H--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH-
Confidence 5 99999999999999998 7999999999999999999999999999999997643221
Q ss_pred hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC-CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~-p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
. +..++. .|++++|+..+++++... |+. +..+..+|.+|..+|++++|...+.++...+|..
T Consensus 412 ~----------~~~~~~---~g~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 412 K----------LWITYY---HTGIDDAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred H----------HHHHHh---ccCHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 1 001111 578999999999999886 666 7888999999999999999999999988877763
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=161.10 Aligned_cols=273 Identities=14% Similarity=0.126 Sum_probs=217.3
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
+......+++...++..++...+|.+|+..+..+ ..|+++..|...+-++..+++ |++|...+++
T Consensus 42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~-------------~~~a~~dar~ 108 (486)
T KOG0550|consen 42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGR-------------FEEALGDARQ 108 (486)
T ss_pred cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHh-------------Hhhcccchhh
Confidence 4455567788999999999999999999999987 599999999999999999885 4557777777
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHH------------------------------------------hHHHH
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQ------------------------------------------QLETI 122 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~a 122 (323)
.++++|..+..+...+.++..++...++.+.+. ...+|
T Consensus 109 ~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 109 SVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred heecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH
Confidence 777777777777777777776666654442221 12244
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch-----------
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY----------- 191 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------- 191 (323)
...--..+++++.+.++.+..|.+++...+. +.|+.+|++++.++|+..
T Consensus 189 ~~ea~~ilkld~~n~~al~vrg~~~yy~~~~--------------------~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 189 QSEAIDILKLDATNAEALYVRGLCLYYNDNA--------------------DKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred HHHHHHHHhcccchhHHHHhcccccccccch--------------------HHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 4555667788888888888888888877766 999999999999999862
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
..++-.-|.-..+.|++..|-++|..++.++|.+.......+ ..+.+. ....|+.++|+..+..++.++|
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY-----~nra~v-----~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY-----GNRALV-----NIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH-----HHhHhh-----hcccCCchhhhhhhhhhhhcCH
Confidence 134556677889999999999999999999999875433111 111111 2347899999999999999999
Q ss_pred cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhhcC
Q psy11738 272 LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYLKK 323 (323)
Q Consensus 272 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~~~ 323 (323)
.+ ..++...|.||..++++++|+++|++++++....+..+.+.+++.-|++
T Consensus 319 sy-ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 319 SY-IKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 98 8999999999999999999999999999998888888888888876653
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=158.49 Aligned_cols=243 Identities=14% Similarity=0.123 Sum_probs=193.1
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 93 (323)
.+-.+|+.+|..|+|++||.+|..+ ..|+.+-++-.++-||..+|++ ++-++.+.+|++++|+.+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~-------------~~Vied~TkALEl~P~Y~ 183 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDW-------------EKVIEDCTKALELNPDYV 183 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhH-------------HHHHHHHHHHhhcCcHHH
Confidence 3556899999999999999999997 4788788999999999988865 558999999999999999
Q ss_pred HHHHHHHHHHHHhhcccchHHH----------------------------------------------------------
Q psy11738 94 AIHKWLAVILNEKATLEGTKAR---------------------------------------------------------- 115 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 115 (323)
.+++..+..+..+|++.++..-
T Consensus 184 KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 184 KALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 9999999999988887432100
Q ss_pred ---------------------------------------------------------------------------HHhHH
Q psy11738 116 ---------------------------------------------------------------------------IQQLE 120 (323)
Q Consensus 116 ---------------------------------------------------------------------------~~~~~ 120 (323)
.++..
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 00000
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.|.+.|+++|+++|.+...+..+|..|....+- ++-.+.|.+|..++|++ +++|+..|.
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~--------------------~~~~~~F~~A~~ldp~n-~dvYyHRgQ 402 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS--------------------EKMWKDFNKAEDLDPEN-PDVYYHRGQ 402 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc--------------------HHHHHHHHHHHhcCCCC-CchhHhHHH
Confidence 111444445555554444444444444444333 88999999999999998 799999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
++.-++++++|+.-|+++++++|.+..... .++.++|. .++++++...|..+....|+. +..+..
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~i-----------Ql~~a~Yr---~~k~~~~m~~Fee~kkkFP~~-~Evy~~ 467 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYI-----------QLCCALYR---QHKIAESMKTFEEAKKKFPNC-PEVYNL 467 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHH-----------HHHHHHHH---HHHHHHHHHHHHHHHHhCCCC-chHHHH
Confidence 999999999999999999999998864321 23333444 568999999999999999997 899999
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 281 LGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 281 lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.|.++...++++.|.+.|.+|+++.|.
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999887
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=155.34 Aligned_cols=257 Identities=16% Similarity=0.182 Sum_probs=201.6
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCC------C------cHH---------HHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSS------L------SDA---------DKKQL 74 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~------~------~~~---------~~~~~ 74 (323)
-+.|...+...+|++|+..++.+ .+|-..+-+-.+..+++-+.+-..- . .+| ...+.
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e 345 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE 345 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence 45667778889999999999887 3776655555555555554441100 0 011 13566
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
.++|+.+|++|++++|....+|..+|.-|..+.+-. .|++.|.+|++++|.|..+||.||..|-.++=.
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~----------AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh- 414 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTH----------AAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH- 414 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccH----------HHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch-
Confidence 799999999999999999999999999999998888 899999999999999999999999998776533
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
.=|+-+|++|+++.|++ +..|..||.||.++++.++|+++|.+|+.....+..+.. .+
T Consensus 415 -------------------~YaLyYfqkA~~~kPnD-sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~-~L- 472 (559)
T KOG1155|consen 415 -------------------FYALYYFQKALELKPND-SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV-RL- 472 (559)
T ss_pred -------------------HHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH-HH-
Confidence 77999999999999998 799999999999999999999999999998655433211 22
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh-------hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK-------QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~-------~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
|...-. .+++++|..+|++-++ .+|+. ..+...|+.-+.+.+++++|-.+..+++.-.+.
T Consensus 473 ---------akLye~---l~d~~eAa~~yek~v~~~~~eg~~~~~t-~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 473 ---------AKLYEE---LKDLNEAAQYYEKYVEVSELEGEIDDET-IKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred ---------HHHHHH---HHhHHHHHHHHHHHHHHHHhhcccchHH-HHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 221111 5678999999999888 45544 466777999999999999999999999988655
Q ss_pred -hHHHHHHHHHHhh
Q psy11738 308 -QEATKLLEKAKSY 320 (323)
Q Consensus 308 -~~~~~~l~~~~~~ 320 (323)
.|++-++.++.+.
T Consensus 540 ~eeak~LlReir~~ 553 (559)
T KOG1155|consen 540 CEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 4555666666544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=171.43 Aligned_cols=235 Identities=14% Similarity=0.012 Sum_probs=190.7
Q ss_pred HHHhhhHHHh---hccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 17 FLKKSDDLFE---EQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 17 ~~~~a~~~~~---~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
++.+|...+. .+.+++|+.+++++ .+|+++.++..+|.+|..++..... ...+.+++|+..++++++++|+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~----~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIF----DKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc----ccchHHHHHHHHHHHHHhcCCC
Confidence 4555554443 36788999999997 5999999999999998877653221 1145689999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++.++..+|.++...|++. +|..+|+++++++|+++.+++.+|.++...|++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~----------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~------------------ 388 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYI----------VGSLLFKQANLLSPISADIKYYYGWNLFMAGQL------------------ 388 (553)
T ss_pred CHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH------------------
Confidence 9999999999999999998 899999999999999999999999999988765
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC-CCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP-VKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
++|+.+|+++++++|.+ +.++..++.++...|++++|+.++++++... |.+..... . ++..+.
T Consensus 389 --~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~-~----------la~~l~-- 452 (553)
T PRK12370 389 --EEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLS-M----------QVMFLS-- 452 (553)
T ss_pred --HHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHH-H----------HHHHHH--
Confidence 99999999999999997 5666667777888999999999999999875 55443211 1 111111
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
..|++++|+..+.+.....|+. ......++.+|...|+ .|...+++.++
T Consensus 453 -~~G~~~eA~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 453 -LKGKHELARKLTKEISTQEITG-LIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred -hCCCHHHHHHHHHHhhhccchh-HHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 1689999999999999888887 6778889999998885 67766666554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=179.57 Aligned_cols=273 Identities=17% Similarity=0.124 Sum_probs=176.0
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC------------cH------
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL------------SD------ 68 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~------------~~------ 68 (323)
..|.....+...+..+...|++++|+..+.++ ..|.+...++.++.+|...|++.... .+
T Consensus 528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 607 (899)
T TIGR02917 528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML 607 (899)
T ss_pred hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34556677788899999999999999999987 58899999999999999888654311 00
Q ss_pred ---HHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 69 ---ADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 69 ---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
....+++++|+..++++++.+|.++.++..+|.++...|++. +|...|.++++.+|++..++..++.
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA----------KAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 012345566666666666666666666666666666666655 6666677777777777777777776
Q ss_pred HHHHhcCCcHHHHHHHHHhhcC--------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 146 WCFEITDMPWYQRKIANAIFDT--------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
++...|++......+....... ...|++++|+..|++++...|++ .++..++.++...|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHH
Confidence 6666665532222111110000 12456666666666666666664 4556666666666666666
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
+..++++++.+|++..... .++..+. ..|++++|+..|++++..+|++ +.++..+|.++...|+
T Consensus 756 ~~~~~~~l~~~~~~~~~~~-----------~la~~~~---~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVLRT-----------ALAELYL---AQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHHHHhCCCCHHHHH-----------HHHHHHH---HCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCc-
Confidence 6666666666666543211 1111111 1567777777777777777776 6777777777777777
Q ss_pred HHHHHHHHHhhCCCChhH
Q psy11738 292 EQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~~~ 309 (323)
.+|+.++++++++.|++.
T Consensus 820 ~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 820 PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHHHHHHHHHhhCCCCc
Confidence 667777777777766543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-20 Score=158.98 Aligned_cols=221 Identities=15% Similarity=0.099 Sum_probs=168.0
Q ss_pred hccHHHHHHHHHhC--C----CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q psy11738 27 EQQFEEVNKMLESS--E----YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLA 100 (323)
Q Consensus 27 ~~~~~~A~~~~~~~--~----~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 100 (323)
.++.+.++..+..+ . .+..+..++.+|.+|...|+ +++|+..|+++++++|+++.++..+|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~-------------~~~A~~~~~~Al~l~P~~~~a~~~lg 105 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL-------------RALARNDFSQALALRPDMADAYNYLG 105 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45667777766654 1 23447789999999988885 46699999999999999999999999
Q ss_pred HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy11738 101 VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180 (323)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 180 (323)
.++...|+++ +|...|+++++++|++..++.++|.+++..|++ ++|++.|
T Consensus 106 ~~~~~~g~~~----------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~--------------------~eA~~~~ 155 (296)
T PRK11189 106 IYLTQAGNFD----------AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY--------------------ELAQDDL 155 (296)
T ss_pred HHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH--------------------HHHHHHH
Confidence 9999999999 899999999999999999999999999988655 9999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC-CCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHH
Q psy11738 181 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP-VKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEA 259 (323)
Q Consensus 181 ~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~A 259 (323)
+++++++|++ +.. .....+....+++++|+..++++.... |.... | .+.....+. ...+++
T Consensus 156 ~~al~~~P~~-~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~----------~---~~~~~~lg~---~~~~~~ 217 (296)
T PRK11189 156 LAFYQDDPND-PYR-ALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG----------W---NIVEFYLGK---ISEETL 217 (296)
T ss_pred HHHHHhCCCC-HHH-HHHHHHHHccCCHHHHHHHHHHHHhhCCccccH----------H---HHHHHHccC---CCHHHH
Confidence 9999999997 321 222234556789999999998776543 32211 0 011111121 112233
Q ss_pred HHHH----HHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 260 LKYF----LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 260 l~~~----~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
+..+ ..+.++.|.. ..+|+++|.+|..+|++++|+.+|++|++++|.+.
T Consensus 218 ~~~~~~~~~~~~~l~~~~-~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 218 MERLKAGATDNTELAERL-CETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred HHHHHhcCCCcHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 4333 3444666666 68899999999999999999999999999987543
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-20 Score=161.35 Aligned_cols=279 Identities=16% Similarity=0.145 Sum_probs=181.9
Q ss_pred hhhcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHH-HHHHHHHHHhcccCCCCcHHHHHHHHHHHHHH
Q psy11738 5 EAAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEII-WRLVRVKYNLATHSSSLSDADKKQLILSAYFL 81 (323)
Q Consensus 5 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~-~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~ 81 (323)
+....-.+...-+..+++.++..++|.+.+.+.... .+|-+.+.+ +.+| ++..+|+... =+..
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~-------------Lf~l 300 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNK-------------LFLL 300 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccch-------------HHHH
Confidence 344445556666788999999999999999999987 477776665 4555 7888886432 3555
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHH
Q psy11738 82 VYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161 (323)
Q Consensus 82 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 161 (323)
..+.++.+|+.+-.|+..|..|...+... +|+++|-|+-.+||.-..+|..+|..+...++.......+-
T Consensus 301 sh~LV~~yP~~a~sW~aVg~YYl~i~k~s----------eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~ 370 (611)
T KOG1173|consen 301 SHKLVDLYPSKALSWFAVGCYYLMIGKYS----------EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYF 370 (611)
T ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCcH----------HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHH
Confidence 56666777777777777777777766666 67777777777777777777777776666555411100000
Q ss_pred HH--hh-cC-----------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 162 NA--IF-DT-----------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 162 ~~--~~-~~-----------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
.+ ++ +. .....+.-|.++|..|+.+.|.+ +.++..+|.+....+.|.+|+.+|++++..-+....
T Consensus 371 tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D-plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 371 TAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD-PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 00 00 00 00122355556666666666655 455555565555556666666666555522111110
Q ss_pred h---hhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 228 D---QCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 228 ~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
. ..-...+++...++ .+++++||.+|++++.+.|.+ +.++-.+|.+|..+|+++.|+++|.++|-+
T Consensus 450 e~~~w~p~~~NLGH~~Rk----------l~~~~eAI~~~q~aL~l~~k~-~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRK----------LNKYEEAIDYYQKALLLSPKD-ASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred cccchhHHHHhHHHHHHH----------HhhHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 0 00112222222222 578999999999999999999 899999999999999999999999999999
Q ss_pred CChhHH-HHHHHHHHh
Q psy11738 305 PAVQEA-TKLLEKAKS 319 (323)
Q Consensus 305 ~~~~~~-~~~l~~~~~ 319 (323)
.|++.. .++|+.+.+
T Consensus 519 ~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 519 KPDNIFISELLKLAIE 534 (611)
T ss_pred CCccHHHHHHHHHHHH
Confidence 999855 578876644
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=175.19 Aligned_cols=237 Identities=11% Similarity=0.010 Sum_probs=189.4
Q ss_pred chhh--hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 9 TVSK--VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 9 ~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
..|. ....++..|..+.. +++.+|+..+.++ ..|++. ....+|.++...| ++++|+..+++
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~G-------------r~eeAi~~~rk 534 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVE-------------DYATALAAWQK 534 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCC-------------CHHHHHHHHHH
Confidence 3445 66667777777776 7888888877765 466654 3445555555555 45678999998
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
++...|.+ ..+..+|.++...|++. +|..+|.++++++|.+......++......|+
T Consensus 535 a~~~~p~~-~a~~~la~all~~Gd~~----------eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr------------ 591 (987)
T PRK09782 535 ISLHDMSN-EDLLAAANTAQAAGNGA----------ARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ------------ 591 (987)
T ss_pred HhccCCCc-HHHHHHHHHHHHCCCHH----------HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC------------
Confidence 88876654 45677888888888887 78889999999999887777766655555554
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
+++|+.+|+++++++|+ +.++.++|.++.+.|++++|+.+|++++.++|++..... .++
T Consensus 592 --------~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~-----------nLG 650 (987)
T PRK09782 592 --------PELALNDLTRSLNIAPS--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQA-----------ALG 650 (987)
T ss_pred --------HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----------HHH
Confidence 49999999999999996 588999999999999999999999999999999875422 112
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
..+.. .|++++|+..|.+++.++|++ +.+++++|.++..+|++++|..+|+++++++|+.
T Consensus 651 ~aL~~---~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 651 YALWD---SGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHH---CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 22222 689999999999999999998 8999999999999999999999999999999974
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-19 Score=158.59 Aligned_cols=227 Identities=11% Similarity=0.029 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHH
Q psy11738 46 VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHH 125 (323)
Q Consensus 46 ~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 125 (323)
....+..|..+...|+ +++|+..++++++.+|+++.++..+|.++...|++. +|+..
T Consensus 35 ~~~~y~~g~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~----------~A~~~ 91 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQ-------------PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVD----------RAIRI 91 (389)
T ss_pred ccHHHHHHHHHHhcCC-------------hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHH----------HHHHH
Confidence 3345556777766664 466999999999999999999999999999999999 88889
Q ss_pred HHHHHccCCCC----hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC--------------CCCCCHHHHHHHHHHHHhcC
Q psy11738 126 MNKAIELKPDD----STTLFMLGMWCFEITDMPWYQRKIANAIFDT--------------LPTSSYEEALKYFLEAEKQH 187 (323)
Q Consensus 126 ~~~al~l~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~A~~~~~~al~~~ 187 (323)
+++++...+.. ..++..+|.++...|++......+...+... ...|++++|+..|+++++.+
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 92 HQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 99998864433 3568899999999887743333222221100 13567777888888777776
Q ss_pred CCch----hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHH
Q psy11738 188 PLFY----SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 263 (323)
Q Consensus 188 p~~~----~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~ 263 (323)
|.+. ...+..+|.++...|++++|+.+|+++++.+|.+..... .++..+.. .|++++|+..|
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----------~la~~~~~---~g~~~~A~~~~ 237 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASI-----------LLGDLALA---QGDYAAAIEAL 237 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH-----------HHHHHHHH---CCCHHHHHHHH
Confidence 6531 123456777777788888888888888777766543211 11122221 57888888888
Q ss_pred HHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 264 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 264 ~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
.++...+|++....+..++.+|...|++++|+..++++++..|+..
T Consensus 238 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 238 ERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 8888888765345667788888888888888888888888877654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=182.52 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=202.6
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC--------------------
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL-------------------- 66 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~-------------------- 66 (323)
..|.+....+..|..+...|++++|+..++++ .+|++..++..++.+|... +.....
T Consensus 380 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~-~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 380 VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ-SPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666777888889999999999999887 5888888888888876432 111100
Q ss_pred ----------cHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC
Q psy11738 67 ----------SDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD 136 (323)
Q Consensus 67 ----------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 136 (323)
......+++++|+..++++++++|+++.+++.+|.+|...|++. +|+..++++++++|++
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~----------~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS----------QADALMRRLAQQKPND 528 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCC
Confidence 00013467899999999999999999999999999999999998 8999999999999999
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHH--------------------h----hcCCCCCCHHHHHHHHHHHHhcCCCchh
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANA--------------------I----FDTLPTSSYEEALKYFLEAEKQHPLFYS 192 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~--------------------~----~~~~~~~~~~~A~~~~~~al~~~p~~~~ 192 (323)
+.+++.+|.++...++.......+..+ . ......|++++|+..++ ..|.+ +
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~-~ 603 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPS-T 603 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCC-c
Confidence 999999998776666442211111100 0 00123467788887765 57886 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
..++.+|.+|...|++++|+.+|++++..+|.+..... .++..+.. .|++++|+..|.+++...|+
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~-----------~la~~~~~---~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL-----------GLIEVDIA---QGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHH---CCCHHHHHHHHHHHhccCCC
Confidence 88888999999999999999999999999998765432 11222222 68899999999999988888
Q ss_pred chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 273 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 273 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+ ...+..+|.++..+|++++|+.+|++++...|.
T Consensus 670 ~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 670 S-LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred C-hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 7 677888899999999999999999999887543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=173.41 Aligned_cols=233 Identities=8% Similarity=-0.029 Sum_probs=199.4
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAI 95 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 95 (323)
.+..+..+...|++++|+..++++ ..|.....++.+|.++...|+ +++|+.++.+++..+|.+...
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd-------------~~eA~~~l~qAL~l~P~~~~l 578 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGN-------------GAARDRWLQQAEQRGLGDNAL 578 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhcCCccHHH
Confidence 455566777899999999999987 444445567788888888774 466999999999999999887
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHH
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEE 175 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
...++..+...|++. +|...|.++++++|+ +.++..+|.++...|++ ++
T Consensus 579 ~~~La~~l~~~Gr~~----------eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~--------------------de 627 (987)
T PRK09782 579 YWWLHAQRYIPGQPE----------LALNDLTRSLNIAPS-ANAYVARATIYRQRHNV--------------------PA 627 (987)
T ss_pred HHHHHHHHHhCCCHH----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCH--------------------HH
Confidence 776666666668888 899999999999996 99999999999998765 99
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCc
Q psy11738 176 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSS 255 (323)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 255 (323)
|+.+|+++++++|++ +.++.++|.++...|++++|+.+|+++++++|.+..... . ++.++.. .|+
T Consensus 628 A~~~l~~AL~l~Pd~-~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~----n-------LA~al~~---lGd 692 (987)
T PRK09782 628 AVSDLRAALELEPNN-SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR----Q-------LAYVNQR---LDD 692 (987)
T ss_pred HHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH----H-------HHHHHHH---CCC
Confidence 999999999999998 699999999999999999999999999999998875422 1 1222222 789
Q ss_pred HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
+++|+..|++++.++|+. +.+.+..|.+.....++..|.+.+.++..+.|..-
T Consensus 693 ~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 693 MAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999998 89999999999999999999999999999988743
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=161.06 Aligned_cols=241 Identities=17% Similarity=0.140 Sum_probs=189.6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
++-|++|..+++.|...+|.-.++.+ ++|.++++|.+||.+-...++-.. |+..++++++++|+|
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~-------------ai~AL~rcl~LdP~N 352 (579)
T KOG1125|consen 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQN-------------AISALRRCLELDPTN 352 (579)
T ss_pred CChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHH-------------HHHHHHHHHhcCCcc
Confidence 44589999999999999999999987 799999999999999887775433 899999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
-++...||..|...|.-. +|..++++=|...|........ ...+...... +.+....
T Consensus 353 leaLmaLAVSytNeg~q~----------~Al~~L~~Wi~~~p~y~~l~~a-----~~~~~~~~~~--------s~~~~~~ 409 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQN----------QALKMLDKWIRNKPKYVHLVSA-----GENEDFENTK--------SFLDSSH 409 (579)
T ss_pred HHHHHHHHHHHhhhhhHH----------HHHHHHHHHHHhCccchhcccc-----CccccccCCc--------CCCCHHH
Confidence 999999999999988776 7888898888888764221110 0000000000 0000011
Q ss_pred HHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 173 YEEALKYFLEAEKQHP--LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p--~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
...-.+.|..+-...| .+ +++...||.+|...|+|++|++||+.|+...|++..... +++.++
T Consensus 410 l~~i~~~fLeaa~~~~~~~D-pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWN-----------RLGAtL--- 474 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKID-PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWN-----------RLGATL--- 474 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCC-hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHH-----------HhhHHh---
Confidence 2445677777777777 45 689999999999999999999999999999999864322 222222
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+..+.++|+..|.+|+++.|++ .+++++||.+++.+|.|++|+++|-.||.+.++
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 12567899999999999999999 899999999999999999999999999999776
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=145.24 Aligned_cols=235 Identities=17% Similarity=0.155 Sum_probs=162.4
Q ss_pred hhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHH
Q psy11738 21 SDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHK 97 (323)
Q Consensus 21 a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 97 (323)
+..+....+.++++...... ..|++.-+.-..|.++++..+ ++.|+..|+...+.||-..+-.-
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD-------------fD~a~s~Feei~knDPYRl~dmd 300 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD-------------FDQAESVFEEIRKNDPYRLDDMD 300 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh-------------HHHHHHHHHHHHhcCCCcchhHH
Confidence 33444455777887766654 388888888888888888775 46699999999999998776555
Q ss_pred HHHHHHHHhhcccch------------------------HHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 98 WLAVILNEKATLEGT------------------------KARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
.+..+++...+-... ..-.+..++|+.+|++|++++|....+|..+|.=|..+.+.
T Consensus 301 lySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 301 LYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence 555555554442100 00124455677777777777777777777777777777665
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
..|+..|++|++++|.++ .+|+.||.+|..++-+.=|+-+|++|..+-|+|.....
T Consensus 381 --------------------~AAi~sYRrAvdi~p~Dy-RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~--- 436 (559)
T KOG1155|consen 381 --------------------HAAIESYRRAVDINPRDY-RAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV--- 436 (559)
T ss_pred --------------------HHHHHHHHHHHhcCchhH-HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH---
Confidence 777777777777777774 77777777777777777777777777777777654321
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.++.++. ..++.++|+.+|++++...... ..++..||..|.++++.++|..+|++-++.
T Consensus 437 --------aLG~CY~---kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 437 --------ALGECYE---KLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred --------HHHHHHH---HhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1111111 1567777777777777776665 567777777777777777777777777664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-18 Score=140.32 Aligned_cols=204 Identities=16% Similarity=0.186 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHH
Q psy11738 44 EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIK 123 (323)
Q Consensus 44 ~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 123 (323)
..+..+..+|.+|...|+ +++|+..++++++.+|.++.++..+|.++...|++. +|.
T Consensus 29 ~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~----------~A~ 85 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGD-------------LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE----------KAE 85 (234)
T ss_pred cHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH----------HHH
Confidence 346788888999988774 567999999999999999999999999999999998 899
Q ss_pred HHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHH
Q psy11738 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH--PLFYSQNVLMLGKT 201 (323)
Q Consensus 124 ~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~ 201 (323)
+.+.++++++|.++.++..+|.++...|++ ++|+..|.+++... |.. ...+..+|.+
T Consensus 86 ~~~~~al~~~~~~~~~~~~~~~~~~~~g~~--------------------~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 144 (234)
T TIGR02521 86 DSFRRALTLNPNNGDVLNNYGTFLCQQGKY--------------------EQAMQQFEQAIEDPLYPQP-ARSLENAGLC 144 (234)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcccH--------------------HHHHHHHHHHHhccccccc-hHHHHHHHHH
Confidence 999999999999999999999999888765 99999999999863 343 4678899999
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHH
Q psy11738 202 YMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 281 (323)
Q Consensus 202 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~l 281 (323)
+...|++++|..++++++..+|.+..... .++...+. .|++++|+..+.+++...|+. +..+..+
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~la~~~~~---~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 209 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQRPESLL-----------ELAELYYL---RGQYKDARAYLERYQQTYNQT-AESLWLG 209 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCChHHHH-----------HHHHHHHH---cCCHHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence 99999999999999999999988654321 12222222 689999999999999998877 6778889
Q ss_pred HHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 282 GKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 282 g~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
+.++...|+.++|..+.+.+....|
T Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 210 IRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999888766544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-17 Score=158.30 Aligned_cols=272 Identities=10% Similarity=0.004 Sum_probs=206.1
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..|.........|..+...|++++|+..++++ .+|.+++++..++.++...|+ +++|+..+++++
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~-------------~~eA~~~l~~~l 110 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ-------------YDEALVKAKQLV 110 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHH
Confidence 34555666788899999999999999999997 589999999999999988774 466999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH-----------
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW----------- 155 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~----------- 155 (323)
+.+|+++. +..+|.++...|++. +|...++++++++|+++.++..+|.++...+....
T Consensus 111 ~~~P~~~~-~~~la~~l~~~g~~~----------~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~ 179 (765)
T PRK10049 111 SGAPDKAN-LLALAYVYKRAGRHW----------DELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLT 179 (765)
T ss_pred HhCCCCHH-HHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence 99999999 999999999999998 89999999999999999999999887764443220
Q ss_pred -----------------------------H---HHHHH---HHhh---------------------cCCCCCCHHHHHHH
Q psy11738 156 -----------------------------Y---QRKIA---NAIF---------------------DTLPTSSYEEALKY 179 (323)
Q Consensus 156 -----------------------------~---~~~~~---~~~~---------------------~~~~~~~~~~A~~~ 179 (323)
+ .+.+. ..+. .....+++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 0 11110 0000 01234678999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh---hh----hhhcchhHH-------------
Q psy11738 180 FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD---QC----FEITDMPWY------------- 239 (323)
Q Consensus 180 ~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~---~~----~~~~~~~~~------------- 239 (323)
|+++++..|..+..+...+|.+|..+|++++|+.+|++++..+|.+... .. ..+....-+
T Consensus 260 ~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 260 YQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 9999998654322345557999999999999999999999988766211 00 000000000
Q ss_pred ----------------------HHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHH
Q psy11738 240 ----------------------QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY 297 (323)
Q Consensus 240 ----------------------~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 297 (323)
....+..+ ...|++++|+..+.+++...|++ +.++..+|.++...|++++|+..
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l---~~~g~~~eA~~~l~~al~~~P~n-~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVA---KYSNDLPQAEMRARELAYNAPGN-QGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Confidence 00111111 12578999999999999999998 79999999999999999999999
Q ss_pred HHHhhCCCChh
Q psy11738 298 LEMTKNYPAVQ 308 (323)
Q Consensus 298 ~~~al~~~~~~ 308 (323)
+++++++.|++
T Consensus 416 l~~al~l~Pd~ 426 (765)
T PRK10049 416 LKKAEVLEPRN 426 (765)
T ss_pred HHHHHhhCCCC
Confidence 99999998885
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-16 Score=153.10 Aligned_cols=281 Identities=12% Similarity=0.037 Sum_probs=182.2
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..|......+..+..+...|++++|+..++++ .+|+++. +..+|.++...|+ +++|+..+++++
T Consensus 78 ~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~-------------~~~Al~~l~~al 143 (765)
T PRK10049 78 LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR-------------HWDELRAMTQAL 143 (765)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC-------------HHHHHHHHHHHH
Confidence 44666666778888999999999999999997 5999999 9999999988875 466999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHH------------------------------------HhHHHHHHHHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARI------------------------------------QQLETIKHHMNKAI 130 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~a~~~~~~al 130 (323)
+++|+++.++..++.++...+..+.+...+ ....+|++.+++++
T Consensus 144 ~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 144 PRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 999999999999888876555443211000 01133444555555
Q ss_pred ccCCCChhH------------------------------------------HHHHhhHHHHhcCCcHHHHHHHHHhhcC-
Q psy11738 131 ELKPDDSTT------------------------------------------LFMLGMWCFEITDMPWYQRKIANAIFDT- 167 (323)
Q Consensus 131 ~l~p~~~~~------------------------------------------~~~lg~~~~~~~~~~~~~~~~~~~~~~~- 167 (323)
+..|.++.. ...+|.++...+++......+...+...
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 443332221 2223333444433322211111111100
Q ss_pred -----------------CCCCCHHHHHHHHHHHHhcCCCc--------------hhHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11738 168 -----------------LPTSSYEEALKYFLEAEKQHPLF--------------YSQNVLMLGKTYMRLENYEQAAYYLE 216 (323)
Q Consensus 168 -----------------~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~~lg~~y~~~g~~~~A~~~~~ 216 (323)
...+++++|+..++++.+..|.. ...++..++.++...|++++|+..++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12345555555555555544410 01234455555555555555555555
Q ss_pred HHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHH
Q psy11738 217 MTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 296 (323)
Q Consensus 217 ~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~ 296 (323)
+++...|.+.... ..++..+. ..|++++|+..+++++.++|++ ...++.+|.++...|++++|..
T Consensus 384 ~al~~~P~n~~l~-----------~~lA~l~~---~~g~~~~A~~~l~~al~l~Pd~-~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 384 ELAYNAPGNQGLR-----------IDYASVLQ---ARGWPRAAENELKKAEVLEPRN-INLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred HHHHhCCCCHHHH-----------HHHHHHHH---hcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCCHHHHHH
Confidence 5555555553211 11222222 2688999999999999999998 7899999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHH
Q psy11738 297 YLEMTKNYPAVQEATKLLEKAK 318 (323)
Q Consensus 297 ~~~~al~~~~~~~~~~~l~~~~ 318 (323)
.++++++..|++-....+.+..
T Consensus 449 ~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 449 LTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999988877776655
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-17 Score=144.33 Aligned_cols=222 Identities=20% Similarity=0.240 Sum_probs=161.7
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
-.++++.+-..++.++..+ +|++-+..++..++.+|-++.++-..-.++..+|+.. +
T Consensus 240 l~~~~dll~~~ad~~y~~c-------------~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n----------~ 296 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGC-------------RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSN----------K 296 (611)
T ss_pred hhhcHHHHHHHHHHHHHcC-------------hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccc----------h
Confidence 4567888888888888888 4567899999999999999987755444888888776 4
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
....-.+..+..|+.+..|+..|..|+..+.+ .+|.++|.|+..++|.+ ..+|...|+.
T Consensus 297 Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~--------------------seARry~SKat~lD~~f-gpaWl~fghs 355 (611)
T KOG1173|consen 297 LFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY--------------------SEARRYFSKATTLDPTF-GPAWLAFGHS 355 (611)
T ss_pred HHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc--------------------HHHHHHHHHHhhcCccc-cHHHHHHhHH
Confidence 44556788899999999999999999998766 88888888888888886 6788888888
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCCchhhh-hhhcchhHHHHHHHHHhhcc-------C------------CCCcHHHHHH
Q psy11738 202 YMRLENYEQAAYYLEMTKNYPVKQDKDQC-FEITDMPWYQRKIANAIFDT-------L------------PTSSYEEALK 261 (323)
Q Consensus 202 y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~-------~------------~~~~~~~Al~ 261 (323)
|...|..++|+.+|.+|-++-|....-.. ..+--+.--..++|..+++. . ..+.|.+|+.
T Consensus 356 fa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~ 435 (611)
T KOG1173|consen 356 FAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALK 435 (611)
T ss_pred hhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHH
Confidence 88888888888888887777665532111 00000000000112111111 0 1357899999
Q ss_pred HHHHHHhhC----Cc--chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 262 YFLEAEKQH----PL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 262 ~~~~a~~~~----p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+|+.++..- +. .+...+.+||.+|.+++++++|+.+|+++|.+.|.
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 999988332 22 23456899999999999999999999999999776
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=151.09 Aligned_cols=232 Identities=19% Similarity=0.206 Sum_probs=57.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--E--YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~--~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
+..+..|..++..|++++|+..+++. . .|++++++..+|.....+++.. +|+..+++++..+|
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~-------------~A~~ay~~l~~~~~ 75 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYD-------------EAIEAYEKLLASDK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------cccccccccccccc
Confidence 45567799999999999999999653 2 5888998888888888777654 46777777777777
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
.++..+..++.+ ...+++. +|.+.+.++.+..+ ++..+..+..++...+++
T Consensus 76 ~~~~~~~~l~~l-~~~~~~~----------~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~----------------- 126 (280)
T PF13429_consen 76 ANPQDYERLIQL-LQDGDPE----------EALKLAEKAYERDG-DPRYLLSALQLYYRLGDY----------------- 126 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-H-----------------
T ss_pred cccccccccccc-ccccccc----------cccccccccccccc-ccchhhHHHHHHHHHhHH-----------------
Confidence 777766666655 4556665 45555555554432 334444444444444333
Q ss_pred CCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 171 SSYEEALKYFLEAEKQH--PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
+++...+.++.... |.+ +..++.+|.++.+.|++++|+.+|+++++++|++..... .+.|. +
T Consensus 127 ---~~~~~~l~~~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~----~l~~~-------l- 190 (280)
T PF13429_consen 127 ---DEAEELLEKLEELPAAPDS-ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN----ALAWL-------L- 190 (280)
T ss_dssp ---HHHHHHHHHHHH-T---T--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH----HHHHH-------H-
T ss_pred ---HHHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH----HHHHH-------H-
Confidence 55555555544432 333 345555566666666666666666666666555543211 01111 1
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
...|+++++...+.......|++ +..+..+|.+|..+|++++|+.+|++++..+|+
T Consensus 191 --i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 191 --IDMGDYDEAREALKRLLKAAPDD-PDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp --CTTCHHHHHHHHHHHHHHH-HTS-CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred --HHCCChHHHHHHHHHHHHHCcCH-HHHHHHHHHHhcccccccccccccccccccccc
Confidence 12444554444444444443443 344455555555555555555555555555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.4e-17 Score=127.99 Aligned_cols=207 Identities=18% Similarity=0.162 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHH
Q psy11738 46 VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHH 125 (323)
Q Consensus 46 ~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 125 (323)
.++...+|.-|...|+. ..|..-+++||++||++..+|..++.+|...|+.+ .|.+.
T Consensus 35 a~arlqLal~YL~~gd~-------------~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~----------~A~e~ 91 (250)
T COG3063 35 AKARLQLALGYLQQGDY-------------AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEND----------LADES 91 (250)
T ss_pred HHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChh----------hHHHH
Confidence 45677788888877765 55899999999999999999999999999999998 78889
Q ss_pred HHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHH
Q psy11738 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYM 203 (323)
Q Consensus 126 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~ 203 (323)
|.+|++++|++.+++.+.|.+++..|.+ ++|...|++|+. +|..+ +.++-++|.|-.
T Consensus 92 YrkAlsl~p~~GdVLNNYG~FLC~qg~~--------------------~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 92 YRKALSLAPNNGDVLNNYGAFLCAQGRP--------------------EEAMQQFERALA-DPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHHHHhcCCCccchhhhhhHHHHhCCCh--------------------HHHHHHHHHHHh-CCCCCCcchhhhhhHHHHh
Confidence 9999999999999999999999998654 999999999999 55532 477999999999
Q ss_pred HcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHH
Q psy11738 204 RLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 283 (323)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~ 283 (323)
+.|+++.|.++|++++.++|+...... . ++...+ ..|+|-.|..++++-...-+-. +.++.....
T Consensus 151 ~~gq~~~A~~~l~raL~~dp~~~~~~l-~----------~a~~~~---~~~~y~~Ar~~~~~~~~~~~~~-A~sL~L~ir 215 (250)
T COG3063 151 KAGQFDQAEEYLKRALELDPQFPPALL-E----------LARLHY---KAGDYAPARLYLERYQQRGGAQ-AESLLLGIR 215 (250)
T ss_pred hcCCchhHHHHHHHHHHhCcCCChHHH-H----------HHHHHH---hcccchHHHHHHHHHHhccccc-HHHHHHHHH
Confidence 999999999999999999999876422 1 122222 2688999999999877776644 566656666
Q ss_pred HHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 284 TYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 284 ~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
+-...|+-+.|-+|=.+.....|.++..
T Consensus 216 iak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 216 IAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 7778999999999988888888876654
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-16 Score=144.34 Aligned_cols=278 Identities=14% Similarity=0.155 Sum_probs=195.8
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
....++.+..++.+|+.++..|++++|..++..+ .+|.++.+++.||.+|-..|+. ++++.++-.
T Consensus 132 ~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~-------------eK~l~~~ll 198 (895)
T KOG2076|consen 132 KSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDI-------------EKALNFWLL 198 (895)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccH-------------HHHHHHHHH
Confidence 3444555788999999999999999999999998 6999999999999999998854 558888888
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
|.-++|++.+.|..++.....+|++. +|+-+|.+||+.+|.+....+....+|.++|+..........++
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~----------qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNIN----------QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHH----------HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 88888988888888888888888777 88888999999999888888888888888886622111111100
Q ss_pred ---------------hcC----CCCCCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC--C
Q psy11738 165 ---------------FDT----LPTSSYEEALKYFLEAEKQHPLF-YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY--P 222 (323)
Q Consensus 165 ---------------~~~----~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~--~ 222 (323)
+.. ...++-+.|++.++.++....+- ..+.+..++.++....+++.|......-... .
T Consensus 269 ~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e 348 (895)
T KOG2076|consen 269 QLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE 348 (895)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC
Confidence 000 01112266777777766632221 1234666777777777777777776555441 1
Q ss_pred CCCchh-------------------hhh--h------------------------------hcchhHHHHHHHHHhhccC
Q psy11738 223 VKQDKD-------------------QCF--E------------------------------ITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 223 ~~~~~~-------------------~~~--~------------------------------~~~~~~~~~~~a~~~~~~~ 251 (323)
+++.+. ..+ . .....-....++.++.
T Consensus 349 ~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~--- 425 (895)
T KOG2076|consen 349 KDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALT--- 425 (895)
T ss_pred CChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHH---
Confidence 111000 000 0 0001111223344433
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
+.|+|.+|+.+|..++...+...+..|..+|.||..+|.+++|+.+|++++.+.|.+-.
T Consensus 426 ~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D 484 (895)
T KOG2076|consen 426 NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD 484 (895)
T ss_pred hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence 36889999999999998888765678999999999999999999999999999887443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=132.79 Aligned_cols=205 Identities=18% Similarity=0.174 Sum_probs=169.8
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.........+..|..++..|++++|+..++++ .+|++..++..+|.+|...|+ +++|+.++++++
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~al 92 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE-------------LEKAEDSFRRAL 92 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHH
Confidence 33444566788999999999999999999987 589999999999999998885 466999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC--CCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK--PDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~--p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
+.+|.++.++..+|.++...|++. +|...+.+++... |.....+..+|.++...|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------- 151 (234)
T TIGR02521 93 TLNPNNGDVLNNYGTFLCQQGKYE----------QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF----------- 151 (234)
T ss_pred hhCCCCHHHHHHHHHHHHHcccHH----------HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH-----------
Confidence 999999999999999999999988 8889999999864 55677889999999888765
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
++|+..|.++++.+|++ ..++..+|.++...|++++|+.++++++...|.+..... .. +
T Consensus 152 ---------~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~----------~ 210 (234)
T TIGR02521 152 ---------DKAEKYLTRALQIDPQR-PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW-LG----------I 210 (234)
T ss_pred ---------HHHHHHHHHHHHhCcCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HH----------H
Confidence 99999999999999997 689999999999999999999999999998766543221 11 1
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
.... ..|+.++|..+...+....|
T Consensus 211 ~~~~---~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 211 RIAR---ALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHH---HHhhHHHHHHHHHHHHhhCc
Confidence 1111 15778888888777666544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-16 Score=123.90 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
..+...+|.-|...|++. .|+.-+++|++.||+++.+|..++.+|...|..
T Consensus 35 a~arlqLal~YL~~gd~~----------~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~------------------- 85 (250)
T COG3063 35 AKARLQLALGYLQQGDYA----------QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN------------------- 85 (250)
T ss_pred HHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh-------------------
Confidence 346677888888888888 889999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCC
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLP 252 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 252 (323)
+.|-+.|++|++++|++ .+++.+.|..++.+|+|++|..+|++|+.. |....-. -.+.+++++.. .
T Consensus 86 -~~A~e~YrkAlsl~p~~-GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s-~t~eN~G~Cal----------~ 151 (250)
T COG3063 86 -DLADESYRKALSLAPNN-GDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPS-DTLENLGLCAL----------K 151 (250)
T ss_pred -hhHHHHHHHHHhcCCCc-cchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcc-hhhhhhHHHHh----------h
Confidence 99999999999999998 799999999999999999999999999874 4432211 12233333322 2
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
.|+++.|.++|+++++.+|++ +.....++..++..|++-.|..++++-...-+
T Consensus 152 ~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 152 AGQFDQAEEYLKRALELDPQF-PPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred cCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 789999999999999999999 78899999999999999999999999876633
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-15 Score=128.39 Aligned_cols=272 Identities=13% Similarity=0.059 Sum_probs=214.7
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS----EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
..+..+--.....+..++-.++...|+..+-.+ ..|+|+..+-.+|.+++..|+.. +|+..|+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~-------------~a~~~Fe 256 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF-------------QAEDIFS 256 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch-------------HHHHHHH
Confidence 344455556667777788888888877655443 58999999999999999999764 4899999
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHH------------------------HHhHHHHHHHHHHHHccCCCChhH
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKAR------------------------IQQLETIKHHMNKAIELKPDDSTT 139 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~a~~~~~~al~l~p~~~~~ 139 (323)
++..+||.+..+--.+|.++...|+++....- -..+..|..+-+|+|.++|.+..+
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~a 336 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEA 336 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchH
Confidence 99999999999999999999998887643221 123556778889999999999999
Q ss_pred HHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 140 LFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 140 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
+...|.++..++.. ++|+-+|+.|..+.|.. ...|..|-++|.-.|++.+|...-+.+.
T Consensus 337 lilKG~lL~~~~R~--------------------~~A~IaFR~Aq~Lap~r-L~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 337 LILKGRLLIALERH--------------------TQAVIAFRTAQMLAPYR-LEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred HHhccHHHHhccch--------------------HHHHHHHHHHHhcchhh-HHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 99999999988766 99999999999999997 6999999999999999999999999998
Q ss_pred CCCCCCchhhhhh-------hcchhHHHH------------------HHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch
Q psy11738 220 NYPVKQDKDQCFE-------ITDMPWYQR------------------KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY 274 (323)
Q Consensus 220 ~~~~~~~~~~~~~-------~~~~~~~~~------------------~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~ 274 (323)
..-|++....... -..+.-.-+ .+|... .-.|++..++..+++.+...|+.
T Consensus 396 ~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~---~~Eg~~~D~i~LLe~~L~~~~D~- 471 (564)
T KOG1174|consen 396 RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELC---QVEGPTKDIIKLLEKHLIIFPDV- 471 (564)
T ss_pred HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHH---HhhCccchHHHHHHHHHhhcccc-
Confidence 8887775432200 000000000 111111 12578899999999999999985
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH-HHHHHHH
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT-KLLEKAK 318 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~ 318 (323)
..+..||.++...+.+++|+++|..|+.++|.++.. +.|....
T Consensus 472 -~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 472 -NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 678899999999999999999999999999998875 6655544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-16 Score=134.52 Aligned_cols=210 Identities=8% Similarity=-0.084 Sum_probs=171.5
Q ss_pred hhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q psy11738 26 EEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVIL 103 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 103 (323)
..+++++|+..+.++ .+|++..++...+.++..++. .+++++.+++++++.+|++..++.+.+.++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~------------~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA------------DLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch------------hHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 357899999999987 599999999999999987752 357799999999999999999999999999
Q ss_pred HHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy11738 104 NEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 183 (323)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 183 (323)
..++... ..++.++++++++++|+|..+|..+|.++...+.+ ++++.++.++
T Consensus 117 ~~l~~~~--------~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~--------------------~eeL~~~~~~ 168 (320)
T PLN02789 117 EKLGPDA--------ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW--------------------EDELEYCHQL 168 (320)
T ss_pred HHcCchh--------hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH--------------------HHHHHHHHHH
Confidence 8877531 11567889999999999999999999998887654 9999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHHc---CCH----HHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc-cCCCCc
Q psy11738 184 EKQHPLFYSQNVLMLGKTYMRL---ENY----EQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD-TLPTSS 255 (323)
Q Consensus 184 l~~~p~~~~~~~~~lg~~y~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~ 255 (323)
++++|++ ..+|...|.++..+ |.+ ++++++..+++.++|++.....+.. - .+.. ..+.++
T Consensus 169 I~~d~~N-~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~---------~--ll~~~~~~l~~ 236 (320)
T PLN02789 169 LEEDVRN-NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLR---------G--LFKDDKEALVS 236 (320)
T ss_pred HHHCCCc-hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHH---------H--HHhcCCccccc
Confidence 9999998 69999999998876 333 5799999999999999976643211 1 1111 012356
Q ss_pred HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh
Q psy11738 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 288 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~ 288 (323)
..+|++.+.+++..+|.. ..++-.|+.+|...
T Consensus 237 ~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~~ 268 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNH-VFALSDLLDLLCEG 268 (320)
T ss_pred chhHHHHHHHhhcccCCc-HHHHHHHHHHHHhh
Confidence 678999999999999987 78888999999863
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-16 Score=146.12 Aligned_cols=266 Identities=12% Similarity=0.086 Sum_probs=198.0
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKE-DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
....|+.+..++.+|...|+.|+|..|+.+|+++ ..|. -++....+|.|...++. .+.|+..|+
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~-------------~~~a~~a~~ 223 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGM-------------SEKALLAFE 223 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccc-------------hhhHHHHHH
Confidence 5678889999999999999999999999999986 3332 24445566767666664 356999999
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
++++++|.++.+...+|.+-....+.. ....+...+.++..++|.||.+...|+.-++-.+++..........
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~-------s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSD-------SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchH-------HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 999999999999888887766555443 2336778999999999999999999999999999885443333322
Q ss_pred hhcC-----------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 164 IFDT-----------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 164 ~~~~-----------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
+..+ -..|+|++|..+|..+++.+|++....++.||.+|+..|+++.|+.+|++.++..|++.
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence 2222 14678888888888888888887557788888888888888888888888888888877
Q ss_pred hhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 227 KDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 227 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
++.. . +++.+.. .+ .....-+.|..+..+++...|.+ ..+|..+|.+|.. ++...++.+|.+|+.+
T Consensus 377 etm~-i---LG~Lya~-----~~-~~~~~~d~a~~~l~K~~~~~~~d-~~a~l~laql~e~-~d~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 377 ETMK-I---LGCLYAH-----SA-KKQEKRDKASNVLGKVLEQTPVD-SEAWLELAQLLEQ-TDPWASLDAYGNALDI 442 (1018)
T ss_pred HHHH-H---HHhHHHh-----hh-hhhHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHh-cChHHHHHHHHHHHHH
Confidence 6533 1 1111100 00 12345678888888888888888 6888888887765 4455558888888743
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=131.70 Aligned_cols=232 Identities=12% Similarity=0.057 Sum_probs=198.3
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIH 96 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 96 (323)
.+.|..++..|-+++|...++.. .....+++...++++|..+.+. ..|+..+...++..|.+....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP-------------~~AL~~~~~gld~fP~~VT~l 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQP-------------ERALLVIGEGLDSFPFDVTYL 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccH-------------HHHHHHHhhhhhcCCchhhhh
Confidence 45788888999999999999886 5667788888999999887743 558999999999999999998
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHH
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEA 176 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 176 (323)
.-.+.++..+++.+ +|.++|+.+++++|.|.++.-.+|.-|+..++. +-|
T Consensus 294 ~g~ARi~eam~~~~----------~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P--------------------E~A 343 (478)
T KOG1129|consen 294 LGQARIHEAMEQQE----------DALQLYKLVLKLHPINVEAIACIAVGYFYDNNP--------------------EMA 343 (478)
T ss_pred hhhHHHHHHHHhHH----------HHHHHHHHHHhcCCccceeeeeeeeccccCCCh--------------------HHH
Confidence 88899999888888 889999999999999999988888888777766 999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc--hhhhhhhcchhHHHHHHHHHhhccCCCC
Q psy11738 177 LKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD--KDQCFEITDMPWYQRKIANAIFDTLPTS 254 (323)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 254 (323)
+.+|++.+++.-.+ +..+.++|.|+..-+++|-++..|++|++...+.. .+..+.++-. ....|
T Consensus 344 lryYRRiLqmG~~s-peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v-------------aV~iG 409 (478)
T KOG1129|consen 344 LRYYRRILQMGAQS-PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV-------------AVTIG 409 (478)
T ss_pred HHHHHHHHHhcCCC-hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee-------------EEecc
Confidence 99999999998887 68899999999999999999999999998854332 2222222211 12368
Q ss_pred cHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 255 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
++.-|-..|+-++.-+|+. ..++.+||..-...|+.++|..++..|....|+
T Consensus 410 D~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSDAQH-GEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred chHHHHHHHHHHhccCcch-HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 8999999999999999998 799999999999999999999999999988887
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-17 Score=143.02 Aligned_cols=233 Identities=16% Similarity=0.104 Sum_probs=106.7
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
+.+..-+...|+.....++++.|+..++++ .++.++..+.+++.. ...+ ++++|+.+++++.+.
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~-------------~~~~A~~~~~~~~~~ 106 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG-------------DPEEALKLAEKAYER 106 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccc-------------ccccccccccccccc
Confidence 344444455777778899999999999997 366666666666665 3333 556799999999887
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC--CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK--PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~--p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.+ ++..+.....++...+++. ++.+.+.++.... |.++..+..+|.++...|+.
T Consensus 107 ~~-~~~~l~~~l~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~------------- 162 (280)
T PF13429_consen 107 DG-DPRYLLSALQLYYRLGDYD----------EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP------------- 162 (280)
T ss_dssp ------------H-HHHTT-HH----------HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH-------------
T ss_pred cc-ccchhhHHHHHHHHHhHHH----------HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH-------------
Confidence 75 5666666677777777777 6677777766655 67889999999999998766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~ 246 (323)
++|+..|+++++++|++ +.+...++.++...|+++++...++......|.+..... . ++.+
T Consensus 163 -------~~A~~~~~~al~~~P~~-~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~-~----------la~~ 223 (280)
T PF13429_consen 163 -------DKALRDYRKALELDPDD-PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD-A----------LAAA 223 (280)
T ss_dssp -------HHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH-H----------HHHH
T ss_pred -------HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH-H----------HHHH
Confidence 99999999999999998 699999999999999999988888887776666553211 1 1222
Q ss_pred hhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 247 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 247 ~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
++. .|++++|+.+|.+++..+|++ +..+..+|.++...|+.++|..++.+++..
T Consensus 224 ~~~---lg~~~~Al~~~~~~~~~~p~d-~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 224 YLQ---LGRYEEALEYLEKALKLNPDD-PLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHH---HT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT------------------
T ss_pred hcc---ccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 222 578999999999999999999 799999999999999999999999998754
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=131.15 Aligned_cols=219 Identities=9% Similarity=-0.030 Sum_probs=153.8
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
+..+..++..|..+...|++++|+..++++ .+|+++.+++.+|.++...|+ +++|+..+++++++
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~Al~l 127 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGN-------------FDAAYEAFDSVLEL 127 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHh
Confidence 344566889999999999999999999987 599999999999999999885 46699999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|+++.++.++|.++...|++. +|++.|+++++++|+++.....+ .+....
T Consensus 128 ~P~~~~a~~~lg~~l~~~g~~~----------eA~~~~~~al~~~P~~~~~~~~~-~l~~~~------------------ 178 (296)
T PRK11189 128 DPTYNYAYLNRGIALYYGGRYE----------LAQDDLLAFYQDDPNDPYRALWL-YLAESK------------------ 178 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHH-HHHHcc------------------
Confidence 9999999999999999999999 89999999999999998421111 111222
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHH--HHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHH
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ--AAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~ 246 (323)
+++++|+..|.++....+.. ... .+.++...|+..+ ++..+.+++...+....... . +|+ .++..
T Consensus 179 --~~~~~A~~~l~~~~~~~~~~-~~~---~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~----e-a~~--~Lg~~ 245 (296)
T PRK11189 179 --LDPKQAKENLKQRYEKLDKE-QWG---WNIVEFYLGKISEETLMERLKAGATDNTELAERLC----E-TYF--YLAKY 245 (296)
T ss_pred --CCHHHHHHHHHHHHhhCCcc-ccH---HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHH----H-HHH--HHHHH
Confidence 34599999998877653332 122 3555566676644 34334433333222111100 0 122 22222
Q ss_pred hhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH
Q psy11738 247 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 287 (323)
Q Consensus 247 ~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~ 287 (323)
+. ..|++++|+.+|++++.++|.+.....+.+......
T Consensus 246 ~~---~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 246 YL---SLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HH---HCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 22 278999999999999999974435555544444443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-14 Score=131.30 Aligned_cols=266 Identities=12% Similarity=0.030 Sum_probs=201.0
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.....+.+|-..+..|+++.|...+.+. ..|+..-.+...|+++...|+. +.|..++.++.+..|
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~-------------~~A~~~l~~a~~~~p 149 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDE-------------ARANQHLEEAAELAG 149 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCC
Confidence 4455677888888899999999999887 3666677777888999888854 558999999988888
Q ss_pred CcH-HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC-
Q psy11738 91 DHY-AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL- 168 (323)
Q Consensus 91 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~- 168 (323)
++. .+....+.++...|+++ .|...+++.++..|+++.++..++.++...|++......+........
T Consensus 150 ~~~l~~~~~~a~l~l~~~~~~----------~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 150 NDNILVEIARTRILLAQNELH----------AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred cCchHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 875 45555688888888888 788889999999999999999999999999888544333333222110
Q ss_pred -----------------CCCCHHHHHHHHHHHHhcCC----CchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 169 -----------------PTSSYEEALKYFLEAEKQHP----LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 169 -----------------~~~~~~~A~~~~~~al~~~p----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
..+..+++...+.++.+..| ++ +..+..++..+...|++++|.+.++++++..|++..
T Consensus 220 ~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~-~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~ 298 (409)
T TIGR00540 220 DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN-IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA 298 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc
Confidence 00111333446777777777 34 588999999999999999999999999999998864
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchh--hhhHHHHHHHHHhcCHHHHHHHHH--HhhC
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS--QNVLMLGKTYMRLENYEQAAYYLE--MTKN 303 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~--~~~~~lg~~y~~~g~~~~A~~~~~--~al~ 303 (323)
.....+. .+.....++.+.++..++++++.+|++ + .....+|.++...|++++|.++|+ ++++
T Consensus 299 ~~~~~l~------------~~~~l~~~~~~~~~~~~e~~lk~~p~~-~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 299 ISLPLCL------------PIPRLKPEDNEKLEKLIEKQAKNVDDK-PKCCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred chhHHHH------------HhhhcCCCChHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 3110000 011122467789999999999999998 7 778899999999999999999999 6888
Q ss_pred CCChhHHHHHHH
Q psy11738 304 YPAVQEATKLLE 315 (323)
Q Consensus 304 ~~~~~~~~~~l~ 315 (323)
.+|+.+....+-
T Consensus 366 ~~p~~~~~~~La 377 (409)
T TIGR00540 366 EQLDANDLAMAA 377 (409)
T ss_pred cCCCHHHHHHHH
Confidence 888877643433
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=132.16 Aligned_cols=194 Identities=11% Similarity=0.015 Sum_probs=159.4
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhh-cccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKA-TLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
.++|+..+.++++++|++..++...+.++..++ .+. +++..+++++..+|++..+|+..|.+....+..
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~----------eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLE----------EELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHH----------HHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 467999999999999999999999999999887 344 788999999999999999999999887766531
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
.+++++.++.++++++|++ ..+|...|.++...|++++++++++++++.+|.+..+..
T Consensus 123 ------------------~~~~el~~~~kal~~dpkN-y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~--- 180 (320)
T PLN02789 123 ------------------AANKELEFTRKILSLDAKN-YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN--- 180 (320)
T ss_pred ------------------hhHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH---
Confidence 1267899999999999999 599999999999999999999999999999999976533
Q ss_pred cchhHHHHHHHHHhhcc--CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCCCh
Q psy11738 234 TDMPWYQRKIANAIFDT--LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~--~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~ 307 (323)
.+.....-.+. ......++++.+..+++.++|++ ..+|.+++.++.. +++..+|.+.+.+++...|.
T Consensus 181 ------~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N-~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 181 ------QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN-ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred ------HHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC-cCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 33322111100 00122467899999999999999 7999999999988 56677899999999887665
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-15 Score=128.40 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=152.9
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHHhcccCCCC---------cH----------
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKE-DVEIIWRLVRVKYNLATHSSSL---------SD---------- 68 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~~la~~y~~~~~~~~~~---------~~---------- 68 (323)
+-...--+.++-.+++.|+++.|+++++-. .+.. ...+-..++..++..|-..... ..
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence 333344577899999999999999988765 2222 2233445555555554321100 00
Q ss_pred ----HHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHh
Q psy11738 69 ----ADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLG 144 (323)
Q Consensus 69 ----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg 144 (323)
--..|.+++|.++|+.|+..+..-.++++++|..+..+|+++ +|.++|-+...+--++...++.++
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld----------eald~f~klh~il~nn~evl~qia 565 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD----------EALDCFLKLHAILLNNAEVLVQIA 565 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH----------HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 002344555555555555555555555555555555555555 555555555555555555555555
Q ss_pred hHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 145 MWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
.+|-.+.+. ..|++++-.+..+-|++ +.++..||..|-+.|+-.+|.+++-......|-
T Consensus 566 niye~led~--------------------aqaie~~~q~~slip~d-p~ilskl~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 566 NIYELLEDP--------------------AQAIELLMQANSLIPND-PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred HHHHHhhCH--------------------HHHHHHHHHhcccCCCC-HHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence 555444443 55666666666666665 455666666666666666666665555555554
Q ss_pred CchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 225 QDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
+.+.. .|.-.. + .++.=+++|+.+|+++.-+.|+. .....+++.|+.+.|+|+.|++.|+..-.-
T Consensus 625 nie~i-------ewl~ay----y---idtqf~ekai~y~ekaaliqp~~-~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 625 NIETI-------EWLAAY----Y---IDTQFSEKAINYFEKAALIQPNQ-SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred chHHH-------HHHHHH----H---HhhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 43321 122111 1 12344789999999999999998 677899999999999999999999998766
Q ss_pred CCh
Q psy11738 305 PAV 307 (323)
Q Consensus 305 ~~~ 307 (323)
.|.
T Consensus 690 fpe 692 (840)
T KOG2003|consen 690 FPE 692 (840)
T ss_pred Ccc
Confidence 555
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-14 Score=128.45 Aligned_cols=261 Identities=10% Similarity=0.055 Sum_probs=184.3
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRL-VRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l-a~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.....+.+|-..+..|+++.|...+.+. ..++++..++.+ +++....|+ ++.|..++.++.+.+|
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~-------------~~~A~~~l~~A~~~~~ 149 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGD-------------EARANQHLERAAELAD 149 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhcCC
Confidence 4455677888888899999999888876 444455555555 455466664 4669999999999999
Q ss_pred CcHHHH-HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC-
Q psy11738 91 DHYAIH-KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL- 168 (323)
Q Consensus 91 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~- 168 (323)
++.-+. ...+.++...|+++ .|...++++.+.+|+++.++..++.++...|++......+........
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~----------~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENH----------AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 875433 34478888888888 888999999999999999999999999999888554433222221110
Q ss_pred ---------------------CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 169 ---------------------PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 169 ---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
...+-+...+.++..-+..|++ +.+...++..+...|+.++|...++++++..|+. .
T Consensus 220 ~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~-~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~-~ 297 (398)
T PRK10747 220 DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ-VALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE-R 297 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-H
Confidence 0000111222222222234555 5788899999999999999999999999854432 1
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
... ++.....++.++++..+++.++.+|++ +..++.+|.++...|++++|.++|++++++.|+
T Consensus 298 l~~----------------l~~~l~~~~~~~al~~~e~~lk~~P~~-~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 298 LVL----------------LIPRLKTNNPEQLEKVLRQQIKQHGDT-PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHH----------------HHhhccCCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 100 112223577888888888888888888 788888899999999999999999998888888
Q ss_pred hHHHHHHH
Q psy11738 308 QEATKLLE 315 (323)
Q Consensus 308 ~~~~~~l~ 315 (323)
....-.+.
T Consensus 361 ~~~~~~La 368 (398)
T PRK10747 361 AYDYAWLA 368 (398)
T ss_pred HHHHHHHH
Confidence 76633333
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=132.10 Aligned_cols=219 Identities=13% Similarity=0.088 Sum_probs=186.6
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.+-+.++.++.....+...++...|+..+..- ..|.++..+..+|+++..+++ .++|+++|+.++
T Consensus 251 ~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~-------------~~~a~~lYk~vl 317 (478)
T KOG1129|consen 251 TQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ-------------QEDALQLYKLVL 317 (478)
T ss_pred hcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh-------------HHHHHHHHHHHH
Confidence 34445556666777888889999999999876 699999999999999988874 466999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
+++|.|.++...+|..|..-++++ -|..+|.+.+.+.-.+++.+.++|.+|+..+.+
T Consensus 318 k~~~~nvEaiAcia~~yfY~~~PE----------~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~------------- 374 (478)
T KOG1129|consen 318 KLHPINVEAIACIAVGYFYDNNPE----------MALRYYRRILQMGAQSPELFCNIGLCCLYAQQI------------- 374 (478)
T ss_pred hcCCccceeeeeeeeccccCCChH----------HHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch-------------
Confidence 999999999999999898889998 899999999999999999999999999988765
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQ--HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
+-++..|++|+.. +|+..+++|++||.+...+||+.-|..+|+-++.-||++.+... +++...
T Consensus 375 -------D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn----NLavL~---- 439 (478)
T KOG1129|consen 375 -------DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN----NLAVLA---- 439 (478)
T ss_pred -------hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH----hHHHHH----
Confidence 9999999999987 56666789999999999999999999999999999998866432 333322
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHH
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 285 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y 285 (323)
...|+.++|..++..|..+.|+. ....++++.+-
T Consensus 440 ------~r~G~i~~Arsll~~A~s~~P~m-~E~~~Nl~~~s 473 (478)
T KOG1129|consen 440 ------ARSGDILGARSLLNAAKSVMPDM-AEVTTNLQFMS 473 (478)
T ss_pred ------hhcCchHHHHHHHHHhhhhCccc-cccccceeEEe
Confidence 22789999999999999999987 56666666443
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=139.82 Aligned_cols=226 Identities=15% Similarity=0.225 Sum_probs=166.9
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH-HHHHHHHHHHHHh
Q psy11738 30 FEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY-AIHKWLAVILNEK 106 (323)
Q Consensus 30 ~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~ 106 (323)
++.|...+... ..|+|+-+++.-|.+.++.+ +|..|+.+|++++.++|... +.....|.|+..+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkk-------------dY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl 212 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKK-------------DYRGALKYYKKALRINPACKADVRIGIGHCFWKL 212 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccc-------------cHHHHHHHHHHHHhcCcccCCCccchhhhHHHhc
Confidence 57787777776 58889878777777777766 45669999999999998743 4556678888888
Q ss_pred hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q psy11738 107 ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 186 (323)
++.. .|+..|.+++.++|.+..++..||.+-....+. ..|..++..+.++..+
T Consensus 213 ~~~~----------~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~-----------------~s~~~~~~ll~~ay~~ 265 (1018)
T KOG2002|consen 213 GMSE----------KALLAFERALQLDPTCVSALVALGEVDLNFNDS-----------------DSYKKGVQLLQRAYKE 265 (1018)
T ss_pred cchh----------hHHHHHHHHHhcChhhHHHHHHHHHHHHHccch-----------------HHHHHHHHHHHHHHhh
Confidence 8888 788899999999999999999999887766554 2347777888888888
Q ss_pred CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q psy11738 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 266 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a 266 (323)
+|.+ |.++..|+..|+..|++..+.+....++........ .+. .+|+ ++.+. ...|+|++|..+|..+
T Consensus 266 n~~n-P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~-----~ae-s~Y~--~gRs~---Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 266 NNEN-PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI-----KAE-SFYQ--LGRSY---HAQGDFEKAFKYYMES 333 (1018)
T ss_pred cCCC-cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH-----HHH-HHHH--HHHHH---HhhccHHHHHHHHHHH
Confidence 8887 677888888888888888888887777765322110 000 1111 22222 2267788888888888
Q ss_pred HhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 267 EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 267 ~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+..+|+++.-.++.||+.|++.|++++|+.+|++.++..|+
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 88887765566777888888888888888888888877666
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-15 Score=124.10 Aligned_cols=186 Identities=11% Similarity=0.001 Sum_probs=150.1
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
..++..+..++.+|..+...|++. +|+..|++++...|+++ .+++.+|.+++..+++
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~---------- 86 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYT----------EAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDY---------- 86 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCH----------
Confidence 466778889999999999999999 89999999999999987 5789999999998766
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHHc--------CCHHHHHHHHHHHhCCCCCCchhhhh-
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQ---NVLMLGKTYMRL--------ENYEQAAYYLEMTKNYPVKQDKDQCF- 231 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~lg~~y~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~- 231 (323)
++|+..|+++++.+|++ +. +++.+|.++... |++++|++.|++++..+|.+......
T Consensus 87 ----------~~A~~~~~~~l~~~p~~-~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 87 ----------AEAIAAADRFIRLHPNH-PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred ----------HHHHHHHHHHHHHCcCC-CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 99999999999999986 44 689999999987 89999999999999999998643220
Q ss_pred -hh----cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc--hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 232 -EI----TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 232 -~~----~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.+ .........++...+. .|++.+|+..|.+++...|+. .+.+++.+|.+|..+|++++|..+++.....
T Consensus 156 ~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 156 KRMDYLRNRLAGKELYVARFYLK---RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00 0000111123333332 689999999999999997763 1478999999999999999999998887655
Q ss_pred CC
Q psy11738 305 PA 306 (323)
Q Consensus 305 ~~ 306 (323)
.|
T Consensus 233 ~~ 234 (235)
T TIGR03302 233 YP 234 (235)
T ss_pred CC
Confidence 54
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-14 Score=123.31 Aligned_cols=264 Identities=15% Similarity=0.108 Sum_probs=177.8
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
+.+.-.+++..+..|+|+.|+.++..+ .+|.|.-.+-...-+|.. ++.|.+|+....+.++++|.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~-------------~~~~~~al~da~k~~~l~p~ 68 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYAS-------------LGSYEKALKDATKTRRLNPD 68 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHH-------------HhhHHHHHHHHHHHHhcCCc
Confidence 345678999999999999999999887 477665444444445544 44778899999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc---CC---------------
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT---DM--------------- 153 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~---~~--------------- 153 (323)
.+.+|..+|..+..+|+++ +|+..|.+.|+.+|+|......|...+.... +.
T Consensus 69 w~kgy~r~Gaa~~~lg~~~----------eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~ 138 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYE----------EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPL 138 (539)
T ss_pred hhhHHHHhHHHHHhcccHH----------HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChh
Confidence 9999999999999999999 8999999999999999988888877663220 00
Q ss_pred -------cH-----------------------HHHHHHHHhhcC------------------------------------
Q psy11738 154 -------PW-----------------------YQRKIANAIFDT------------------------------------ 167 (323)
Q Consensus 154 -------~~-----------------------~~~~~~~~~~~~------------------------------------ 167 (323)
+. +...... +.+.
T Consensus 139 t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~-l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee 217 (539)
T KOG0548|consen 139 TNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQ-LKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEE 217 (539)
T ss_pred hhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHH-HhcCccccccccccccCCCCCCcccccCCCCCccchhHHH
Confidence 00 0000000 0000
Q ss_pred -----------------CCCCCHHHHHHHHHHHHhcCCCchhH-------------------------------------
Q psy11738 168 -----------------LPTSSYEEALKYFLEAEKQHPLFYSQ------------------------------------- 193 (323)
Q Consensus 168 -----------------~~~~~~~~A~~~~~~al~~~p~~~~~------------------------------------- 193 (323)
....++..|+++|.++++++ .+ ..
T Consensus 218 ~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~-it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k 295 (539)
T KOG0548|consen 218 RRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TD-ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK 295 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hh-hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence 01235788888888888877 43 12
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC--Cchhhh-------------hhhcchhHHHHHHHHHhhccCCCC
Q psy11738 194 ----NVLMLGKTYMRLENYEQAAYYLEMTKNYPVK--QDKDQC-------------FEITDMPWYQRKIANAIFDTLPTS 254 (323)
Q Consensus 194 ----~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~--~~~~~~-------------~~~~~~~~~~~~~a~~~~~~~~~~ 254 (323)
++..+|..|..+++++.|+.+|++++...-+ ...... +.-...+--.+.-++..|. .|
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk---~g 372 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK---KG 372 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh---cc
Confidence 2223444555666777777777777655333 100000 0000111122223444444 57
Q ss_pred cHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 255 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+|..|+.+|.+|+..+|++ +..|.+.|.||..+|.+..|+...+++++++|.
T Consensus 373 dy~~Av~~YteAIkr~P~D-a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPED-ARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred CHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 7888888888888888887 788888888888888888888888888888776
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=118.38 Aligned_cols=116 Identities=7% Similarity=-0.046 Sum_probs=108.0
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHH
Q psy11738 79 YFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQR 158 (323)
Q Consensus 79 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~ 158 (323)
...++++++++|++ ++.+|.++...|++. +|..+|.+++.++|.++.++..+|.++...|++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----- 74 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYS----------RAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY----- 74 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-----
Confidence 56799999999986 567899999999998 899999999999999999999999999998766
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|+..|.++++++|++ +.+++++|.++..+|++++|+..|++++.++|++...
T Consensus 75 ---------------~~A~~~y~~Al~l~p~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 75 ---------------TTAINFYGHALMLDASH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred ---------------HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999998 7999999999999999999999999999999998754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=122.48 Aligned_cols=198 Identities=11% Similarity=0.048 Sum_probs=144.1
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCH---HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDV---EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~---~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
+..+..+...+..|..++..|++++|+..++++ ..|.++ .+++.+|.+|...|+ +++|+..+
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~-------------~~~A~~~~ 93 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD-------------YAEAIAAA 93 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC-------------HHHHHHHH
Confidence 456777888999999999999999999999987 466654 678999999988874 56799999
Q ss_pred HhhccCCCCcHH---HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 83 YNALPQHEDHYA---IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 83 ~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
+++++.+|+++. +++.+|.++...... .....+...+|++.|++++..+|++..++..+..+....+........
T Consensus 94 ~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~ 171 (235)
T TIGR03302 94 DRFIRLHPNHPDADYAYYLRGLSNYNQIDR--VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELY 171 (235)
T ss_pred HHHHHHCcCCCchHHHHHHHHHHHHHhccc--ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 688889988765110 001112334899999999999999976653332221111110000011
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPV 223 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 223 (323)
++...+ ..|++.+|+..|++++...|+. .+.+++.+|.++..+|++++|+.+++......|
T Consensus 172 ~a~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYL---KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHH---HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 111111 1256699999999999997764 247899999999999999999999988766544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=131.50 Aligned_cols=253 Identities=18% Similarity=0.158 Sum_probs=170.7
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-C---------CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-E---------YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILS 77 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~---------~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~ 77 (323)
...|.........+..+...|+|+.|+..++.+ + +|.-......+|.+|..++.+..+ ...|++
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eA------v~ly~~ 266 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEA------VNLYEE 266 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHH------HHHHHH
Confidence 344555555666899999999999999988876 1 222233334477888777754332 444444
Q ss_pred HHHHHHhhc-cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-----CCC---hhHHHHHhhHHH
Q psy11738 78 AYFLVYNAL-PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-----PDD---STTLFMLGMWCF 148 (323)
Q Consensus 78 A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-----p~~---~~~~~~lg~~~~ 148 (323)
|+...+... +.+|.-+..+.++|.+|...|++. +|..++++|+++- +.. +..+..++.++.
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~----------EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFA----------EAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChH----------HHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 555444444 346777888999999999999999 6667777776653 222 334666677777
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-----CCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-----PLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
.++.+ ++|+.++++++++- +++ .+..+.+||.+|..+|++++|.++|++|+++
T Consensus 337 ~~~~~--------------------Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 337 SMNEY--------------------EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred Hhcch--------------------hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 77655 99999999998871 222 2466899999999999999999999999987
Q ss_pred CCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh-------CCcchhhhhHHHHHHHHHhcCHHHH
Q psy11738 222 PVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ-------HPLFYSQNVLMLGKTYMRLENYEQA 294 (323)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~-------~p~~~~~~~~~lg~~y~~~g~~~~A 294 (323)
............+. ....++..++. .+++.+|-..|.++..+ +|+. ...+.+||.+|..+|+++.|
T Consensus 397 ~~~~~~~~~~~~~~---~l~~la~~~~~---~k~~~~a~~l~~~~~~i~~~~g~~~~~~-~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 397 LRELLGKKDYGVGK---PLNQLAEAYEE---LKKYEEAEQLFEEAKDIMKLCGPDHPDV-TYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred HHhcccCcChhhhH---HHHHHHHHHHH---hcccchHHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHcccHHHH
Confidence 53332211111111 11123333332 34555666666655544 3444 46789999999999999999
Q ss_pred HHHHHHhhC
Q psy11738 295 AYYLEMTKN 303 (323)
Q Consensus 295 ~~~~~~al~ 303 (323)
+++..+++.
T Consensus 470 ~~~~~~~~~ 478 (508)
T KOG1840|consen 470 EELEEKVLN 478 (508)
T ss_pred HHHHHHHHH
Confidence 999888873
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-13 Score=124.72 Aligned_cols=239 Identities=12% Similarity=0.058 Sum_probs=179.0
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCH-HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDV-EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~-~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
...|.+....+..|......|+++.|...+.++ ..|++. .+....++++...|+ ++.|+..++.
T Consensus 112 ~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~-------------~~~Al~~l~~ 178 (409)
T TIGR00540 112 DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE-------------LHAARHGVDK 178 (409)
T ss_pred hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC-------------HHHHHHHHHH
Confidence 345556677788899999999999999999987 366653 455556888887775 4669999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc---------------------------------
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE--------------------------------- 131 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--------------------------------- 131 (323)
.++..|+++.++..++.++...|++. ++.+.+.+..+
T Consensus 179 l~~~~P~~~~~l~ll~~~~~~~~d~~----------~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 179 LLEMAPRHKEVLKLAEEAYIRSGAWQ----------ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999998 34444444443
Q ss_pred -----cCC----CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHH--HHHHHH
Q psy11738 132 -----LKP----DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN--VLMLGK 200 (323)
Q Consensus 132 -----l~p----~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~lg~ 200 (323)
..| +++..+..+|..+... |++++|+..++++++..|++ ... ......
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~--------------------g~~~~A~~~l~~~l~~~pd~-~~~~~~~l~~~ 307 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDC--------------------DDHDSAQEIIFDGLKKLGDD-RAISLPLCLPI 307 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHC--------------------CChHHHHHHHHHHHhhCCCc-ccchhHHHHHh
Confidence 333 2444444444444444 55699999999999999997 332 122334
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHH--HHHhhCCcchhhhh
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL--EAEKQHPLFYSQNV 278 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~--~a~~~~p~~~~~~~ 278 (323)
.....++.+.+++.++++++.+|+++.. ..+..++|... . .+++++|.++|+ .++..+|+. ..+
T Consensus 308 ~~l~~~~~~~~~~~~e~~lk~~p~~~~~--~ll~sLg~l~~-------~---~~~~~~A~~~le~a~a~~~~p~~--~~~ 373 (409)
T TIGR00540 308 PRLKPEDNEKLEKLIEKQAKNVDDKPKC--CINRALGQLLM-------K---HGEFIEAADAFKNVAACKEQLDA--NDL 373 (409)
T ss_pred hhcCCCChHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHH-------H---cccHHHHHHHHHHhHHhhcCCCH--HHH
Confidence 4455688999999999999999998731 11222333322 2 789999999999 688889985 446
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 279 LMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 279 ~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..+|.++..+|+.++|..+|++++.+
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 69999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-13 Score=123.00 Aligned_cols=229 Identities=15% Similarity=0.085 Sum_probs=171.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCH-HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDV-EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~-~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.-.++.-+......|+++.|...+.++ .+|++. ......++++...|+ ++.|+..++++++.+|
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~-------------~~~Al~~l~~~~~~~P 184 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNE-------------NHAARHGVDKLLEVAP 184 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhcCC
Confidence 344555566668999999999999997 366653 333455888887775 4669999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC------------------------------------
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP------------------------------------ 134 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p------------------------------------ 134 (323)
+++.++..++.+|...|++. ++.+.+.+..+..+
T Consensus 185 ~~~~al~ll~~~~~~~gdw~----------~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 185 RHPEVLRLAEQAYIRTGAWS----------SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred CCHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999999999999999998 44434444443333
Q ss_pred ------CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCH
Q psy11738 135 ------DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 208 (323)
Q Consensus 135 ------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~ 208 (323)
+++.+...++..+... |+.++|.+.++++++..|+ +......+.+ ..+++
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~--------------------g~~~~A~~~L~~~l~~~~~--~~l~~l~~~l--~~~~~ 310 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIEC--------------------DDHDTAQQIILDGLKRQYD--ERLVLLIPRL--KTNNP 310 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHhcCCC--HHHHHHHhhc--cCCCh
Confidence 3444444444444444 4559999999999996554 3433334443 45999
Q ss_pred HHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh
Q psy11738 209 EQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 288 (323)
Q Consensus 209 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~ 288 (323)
++++..+++.++..|++..... .++.+ .+. .++|.+|.++|++++...|+. ..+..++.++.+.
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l-~lgrl----------~~~---~~~~~~A~~~le~al~~~P~~--~~~~~La~~~~~~ 374 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWS-TLGQL----------LMK---HGEWQEASLAFRAALKQRPDA--YDYAWLADALDRL 374 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHH-HHHHH----------HHH---CCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHc
Confidence 9999999999999999875322 22221 222 688999999999999999985 5578999999999
Q ss_pred cCHHHHHHHHHHhhCCC
Q psy11738 289 ENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 289 g~~~~A~~~~~~al~~~ 305 (323)
|+.++|..+|++++.+.
T Consensus 375 g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 375 HKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999998763
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=118.11 Aligned_cols=125 Identities=7% Similarity=0.021 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH-HHhcC
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC-FEITD 152 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~-~~~~~ 152 (323)
..++++..+++++..+|+++++|..+|.++...|++. +|...|.++++++|+++.++..+|.++ +..|+
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~----------~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD----------NALLAYRQALQLRGENAELYAALATVLYYQAGQ 123 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 4578999999999999999999999999999999999 899999999999999999999999975 55553
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
. .+++|...++++++++|++ +.+++++|.++.+.|++++|+.++++++++.|.+.+
T Consensus 124 ~------------------~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 124 H------------------MTPQTREMIDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred C------------------CcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 2 2399999999999999998 799999999999999999999999999999887654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=112.34 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=60.2
Q ss_pred HHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy11738 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 203 (323)
Q Consensus 124 ~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~ 203 (323)
.+|+++++++|++ ++.+|.++...|++ ++|+.+|+.++.++|.+ ..+++.+|.++.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~--------------------~~A~~~~~~al~~~P~~-~~a~~~lg~~~~ 69 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDY--------------------SRAVIDFSWLVMAQPWS-WRAHIALAGTWM 69 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcCCCc-HHHHHHHHHHHH
Confidence 3688888888875 55677777776544 88888888888888887 588888888888
Q ss_pred HcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 204 RLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
..|++++|+.+|++++.++|.+..
T Consensus 70 ~~g~~~~A~~~y~~Al~l~p~~~~ 93 (144)
T PRK15359 70 MLKEYTTAINFYGHALMLDASHPE 93 (144)
T ss_pred HHhhHHHHHHHHHHHHhcCCCCcH
Confidence 888888777777777777665543
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=120.72 Aligned_cols=271 Identities=15% Similarity=0.120 Sum_probs=201.6
Q ss_pred hhhHHHHHHhhhHHHh-hccHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 11 SKVSEEFLKKSDDLFE-EQQFEEVNKMLESS-------EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~-------~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
|.++..++--+..+++ .+.++++++...++ ..--.+-.+.-+|-+|..+...... +.++.....++++.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~--~seR~~~h~kslqal 467 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL--KSERDALHKKSLQAL 467 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC--hHHHHHHHHHHHHHH
Confidence 3444444444444444 58888888877765 1233456677788888877766554 667788889999999
Q ss_pred HhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC-CChhHHHHHhhHHHHhcCCc-------
Q psy11738 83 YNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP-DDSTTLFMLGMWCFEITDMP------- 154 (323)
Q Consensus 83 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p-~~~~~~~~lg~~~~~~~~~~------- 154 (323)
++|++.+|+|+.+.++++.-|...++.. .|.++..++++++| +++.+|+.|+.++...+++.
T Consensus 468 e~av~~d~~dp~~if~lalq~A~~R~l~----------sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLALQYAEQRQLT----------SALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhHH----------HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 9999999999999999999999999888 78889999999955 57788999998877555431
Q ss_pred ---------------------------------------HHH---------HHHHHHhhcC-------------------
Q psy11738 155 ---------------------------------------WYQ---------RKIANAIFDT------------------- 167 (323)
Q Consensus 155 ---------------------------------------~~~---------~~~~~~~~~~------------------- 167 (323)
|-. +.-....++.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 100 0000000000
Q ss_pred ---------------CC----------------------------CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11738 168 ---------------LP----------------------------TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204 (323)
Q Consensus 168 ---------------~~----------------------------~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~ 204 (323)
+| .+.-++|..++.++-.++|.. +.+++..|.++..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS-ASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh-HHHHHHhhHHHHH
Confidence 00 112367777888888999986 7899999999999
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHH
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 284 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~ 284 (323)
.|+.++|.+.|..|+.++|++..... .+|..+... ...+..++...+..++.++|.+ ..+|+.||.+
T Consensus 697 ~~~~~EA~~af~~Al~ldP~hv~s~~-----------Ala~~lle~-G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v 763 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALDPDHVPSMT-----------ALAELLLEL-GSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEV 763 (799)
T ss_pred HHhhHHHHHHHHHHHhcCCCCcHHHH-----------HHHHHHHHh-CCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Confidence 99999999999999999999986533 122222221 1334455556999999999999 7999999999
Q ss_pred HHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 285 YMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 285 y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+...|+.++|.+||.-|+++.+.
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHccchHHHHHHHHHHHhhccC
Confidence 99999999999999999998654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-14 Score=115.06 Aligned_cols=129 Identities=13% Similarity=0.161 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
++.++++..++++++.+|++ ...|+.||.+|...|++++|+.+|++++.++|++..... .++.+++..
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~-~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~-----------~lA~aL~~~ 120 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQN-SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYA-----------ALATVLYYQ 120 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHHh
Confidence 34599999999999999998 799999999999999999999999999999999876432 122222211
Q ss_pred CCCCc--HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC-ChhHHHHHH
Q psy11738 251 LPTSS--YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP-AVQEATKLL 314 (323)
Q Consensus 251 ~~~~~--~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 314 (323)
.|+ +++|+..+.+++..+|++ ..+++.+|.++...|++++|+.+|++++++. |+++-..++
T Consensus 121 --~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 121 --AGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred --cCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 234 699999999999999999 7999999999999999999999999999994 444444554
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-14 Score=125.91 Aligned_cols=190 Identities=14% Similarity=0.093 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
+.|.+.+|.-.|+.|+..+|.++++|.+||++....++-. .|+..+.++++++|+|..++..||..|...
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~----------~ai~AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQ----------NAISALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchH----------HHHHHHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 4566788999999999999999999999999998877766 788899999999999999999999998877
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH---------HHHHcCCHHHHHHHHHHHhCC
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK---------TYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~---------~y~~~g~~~~A~~~~~~al~~ 221 (323)
|.- .+|++++.+=+..+|... +...+. -......+....+.|-.+...
T Consensus 367 g~q--------------------~~Al~~L~~Wi~~~p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 367 GLQ--------------------NQALKMLDKWIRNKPKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred hhH--------------------HHHHHHHHHHHHhCccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 644 889999998887766531 111100 001111233445556666555
Q ss_pred CCCCch-hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 222 PVKQDK-DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 222 ~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
.|...+ +....++-+ ++ -.+.|+.|+.+|+.|+...|++ ...|..||.++....+..+|+..|.+
T Consensus 424 ~~~~~DpdvQ~~LGVL----------y~---ls~efdraiDcf~~AL~v~Pnd-~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVL----------YN---LSGEFDRAVDCFEAALQVKPND-YLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred CCCCCChhHHhhhHHH----------Hh---cchHHHHHHHHHHHHHhcCCch-HHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 553211 111122111 11 1588999999999999999999 79999999999999999999999999
Q ss_pred hhCCCCh
Q psy11738 301 TKNYPAV 307 (323)
Q Consensus 301 al~~~~~ 307 (323)
|+++.|.
T Consensus 490 ALqLqP~ 496 (579)
T KOG1125|consen 490 ALQLQPG 496 (579)
T ss_pred HHhcCCC
Confidence 9999998
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=120.47 Aligned_cols=219 Identities=15% Similarity=0.120 Sum_probs=186.4
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.+..+..+|+..|..|++++|...|+.+ -+....++++.+|-.+..+| ++++|+.+|-+...+--
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~-------------~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALG-------------NLDEALDCFLKLHAILL 555 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhc-------------CHHHHHHHHHHHHHHHH
Confidence 4455677888889999999999999987 47778888888888776666 56789999999988888
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
+++++++.++.+|..+.+.. +|++++.++-.+-|++|..+..||.+|-+-|+-
T Consensus 556 nn~evl~qianiye~led~a----------qaie~~~q~~slip~dp~ilskl~dlydqegdk----------------- 608 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPA----------QAIELLMQANSLIPNDPAILSKLADLYDQEGDK----------------- 608 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHH----------HHHHHHHHhcccCCCCHHHHHHHHHHhhcccch-----------------
Confidence 89999999999999999888 999999999999999999999999999887765
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
..|..++-.+.+..|.+ ..+.-.||..|....=+++|+.+|++|.-+.|+...+ +..++.++..
T Consensus 609 ---sqafq~~ydsyryfp~n-ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw-----------qlmiasc~rr- 672 (840)
T KOG2003|consen 609 ---SQAFQCHYDSYRYFPCN-IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW-----------QLMIASCFRR- 672 (840)
T ss_pred ---hhhhhhhhhcccccCcc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH-----------HHHHHHHHHh-
Confidence 89999999999999998 5888889999999999999999999999998886532 1223444333
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcC
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~ 290 (323)
.|+|..|++.|+......|.+ ...+-.|-.+...+|-
T Consensus 673 --sgnyqka~d~yk~~hrkfped-ldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 --SGNYQKAFDLYKDIHRKFPED-LDCLKFLVRIAGDLGL 709 (840)
T ss_pred --cccHHHHHHHHHHHHHhCccc-hHHHHHHHHHhccccc
Confidence 799999999999999999998 6777777777666554
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=121.64 Aligned_cols=223 Identities=15% Similarity=0.085 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
++..|.+|+..+..|++..|+++..|.+.+.++...++++ ++.-...+.++++|..+..+...++++...
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~----------~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFE----------EALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHh----------hcccchhhheecCCCccccccchhhhhhhh
Confidence 4567888999999999999999999999999999999999 677788899999999999998999988877
Q ss_pred cCCcHHHHHH--------HHHhhcC------------------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 151 TDMPWYQRKI--------ANAIFDT------------------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 151 ~~~~~~~~~~--------~~~~~~~------------------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
++..-....+ ++.+-.. +..++|++|...--..+++++.+ ..+++..
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n-~~al~vr 209 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN-AEALYVR 209 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch-hHHHHhc
Confidence 7552222111 1110000 24678999999999999999998 7999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh-cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch---
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI-TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--- 274 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~--- 274 (323)
|.|++..++.+.|+.+|++++.++|.+........ .......+.-++..+ ..|+|..|.+.|..++.++|++.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f---k~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF---KNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh---hccchhHHHHHHHHhhcCCccccchh
Confidence 99999999999999999999999999865544211 111111122222233 37999999999999999999752
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+..|.++|.+...+|+..+|+...+.|+.|+|.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 245889999999999999999999999999987
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-13 Score=114.12 Aligned_cols=184 Identities=13% Similarity=0.117 Sum_probs=146.5
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
-+|...+-|+.+|.-+...|++. .|..+|..|++.+|++..+.+..|.+|..+|.-
T Consensus 33 ~~~advekhlElGk~lla~~Q~s----------DALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-------------- 88 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLS----------DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-------------- 88 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC--------------
Confidence 35678888999999999999999 889999999999999999999999999999865
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh----hhhcchhHHHHHH
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC----FEITDMPWYQRKI 243 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~~~~~ 243 (323)
.-|+..+.+++++.|++ ..+....|.+++++|++++|..-|+..+.-+|.+....- ..+..-.|.....
T Consensus 89 ------k~al~Dl~rVlelKpDF-~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~q 161 (504)
T KOG0624|consen 89 ------KAALQDLSRVLELKPDF-MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQ 161 (504)
T ss_pred ------ccchhhHHHHHhcCccH-HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHH
Confidence 88999999999999998 589999999999999999999999999999997643221 1122222222222
Q ss_pred HHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 244 ANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 244 a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
+.. ....|++..|+.+..+.+++.|.+ +..+.+.+.||...|+...|+..++.+-++..
T Consensus 162 l~s---~~~~GD~~~ai~~i~~llEi~~Wd-a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 162 LKS---ASGSGDCQNAIEMITHLLEIQPWD-ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred HHH---HhcCCchhhHHHHHHHHHhcCcch-hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 222 223677888888888888888877 67777778888888888888877777777633
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-12 Score=106.41 Aligned_cols=245 Identities=15% Similarity=0.071 Sum_probs=176.5
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
++.-+-.|-.+.-+++.++|++++..+ .+|...++.+.+|..+...|. .+.|+..-+..++ .|+
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE-------------vDRAIRiHQ~L~~-spd 100 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE-------------VDRAIRIHQTLLE-SPD 100 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch-------------HHHHHHHHHHHhc-CCC
Confidence 344455566666678888999988876 588999999999999988874 4667777655544 455
Q ss_pred cHH-----HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 92 HYA-----IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 92 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.+. +...+|.=|...|-++ .|...|........--..+.-.|-.+|....+|
T Consensus 101 lT~~qr~lAl~qL~~Dym~aGl~D----------RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW------------- 157 (389)
T COG2956 101 LTFEQRLLALQQLGRDYMAAGLLD----------RAEDIFNQLVDEGEFAEGALQQLLNIYQATREW------------- 157 (389)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhh----------HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH-------------
Confidence 443 2333444444444333 677777777765555666777777787776655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFY----SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 242 (323)
++||..-++..++.|... +..+..|+..+....+++.|+..+.+|++.+|+...+.. .++.+
T Consensus 158 -------~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi-~lG~v------ 223 (389)
T COG2956 158 -------EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI-ILGRV------ 223 (389)
T ss_pred -------HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh-hhhHH------
Confidence 888888888888877642 234666777788888899999999999999888765532 22221
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy11738 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEK 316 (323)
Q Consensus 243 ~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 316 (323)
. ...|+|+.|++.+.++.+.+|++.+.+...|-.||..+|+.++...++.++.+..+..+..-++-+
T Consensus 224 ----~---~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~ 290 (389)
T COG2956 224 ----E---LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLAD 290 (389)
T ss_pred ----H---HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHH
Confidence 1 126889999999999999999887788888899999999999999999999888887666554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.1e-14 Score=107.27 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=109.6
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 80 FLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 80 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
..+++++..+|++..+.+.+|.++...+++. +|.+.+++++.++|.++.++..+|.++...+++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~------ 67 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYD----------EALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY------ 67 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH------
Confidence 4578999999999999999999999999998 899999999999999999999999999998765
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|..+++++|++ +..++.+|.+|...|++++|+.+++++++++|.+..
T Consensus 68 --------------~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 68 --------------EEAIDAYALAAALDPDD-PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred --------------HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 99999999999999998 699999999999999999999999999999998754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=105.89 Aligned_cols=128 Identities=19% Similarity=0.226 Sum_probs=100.8
Q ss_pred HHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy11738 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 203 (323)
Q Consensus 124 ~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~ 203 (323)
+++.+++.++|++..+.+.+|..++..+++ ++|+..|+++++++|++ +.++..+|.++.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~--------------------~~A~~~~~~~~~~~p~~-~~~~~~la~~~~ 62 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRY--------------------DEALKLFQLLAAYDPYN-SRYWLGLAACCQ 62 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccH--------------------HHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence 368888889998888888888888877655 88899999988888887 688888888888
Q ss_pred HcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHH
Q psy11738 204 RLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 283 (323)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~ 283 (323)
.+|++++|+.++++++.. +|++ +..++.+|.
T Consensus 63 ~~~~~~~A~~~~~~~~~~------------------------------------------------~p~~-~~~~~~la~ 93 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAAL------------------------------------------------DPDD-PRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHHHHhc------------------------------------------------CCCC-hHHHHHHHH
Confidence 888888887777776665 4444 566788888
Q ss_pred HHHHhcCHHHHHHHHHHhhCCCChhHH-HHHHHHHHhhh
Q psy11738 284 TYMRLENYEQAAYYLEMTKNYPAVQEA-TKLLEKAKSYL 321 (323)
Q Consensus 284 ~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~~~~~~ 321 (323)
+|...|++++|+.+|+++++++|.+.. .+..+++..++
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 888889999999999998888777555 35555565554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-12 Score=114.97 Aligned_cols=210 Identities=11% Similarity=0.007 Sum_probs=157.5
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC---cHHHHHHHHHHHHHhhcccchHHHHHh
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED---HYAIHKWLAVILNEKATLEGTKARIQQ 118 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (323)
+|+++-.++.+|..+...++... +...+.++....|. ..+.....+.++...|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~-------- 60 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPA-------------AAAKAAAAAQALAARATERERAHVEALSAWIAGDLP-------- 60 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcch-------------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHH--------
Confidence 79999999999988888876433 45555555555554 4456677788888888888
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
+|...++++++.+|++..++.. +..++..+.. .+....+.+.+......+|+. ..++..+
T Consensus 61 --~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 120 (355)
T cd05804 61 --KALALLEQLLDDYPRDLLALKL-HLGAFGLGDF----------------SGMRDHVARVLPLWAPENPDY-WYLLGML 120 (355)
T ss_pred --HHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccc----------------ccCchhHHHHHhccCcCCCCc-HHHHHHH
Confidence 8889999999999999987765 6555555543 122244555555544566775 5778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc---hh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF---YS 275 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~---~~ 275 (323)
|.++...|++++|+..+++++.++|++.... ..++..++. .|++++|+.++.+++...|.. ..
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~-----------~~la~i~~~---~g~~~eA~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAV-----------HAVAHVLEM---QGRFKEGIAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH-----------HHHHHHHHH---cCCHHHHHHHHHhhhhccCCCcchhH
Confidence 9999999999999999999999999985321 122333332 689999999999999987643 11
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
..+..+|.++...|++++|+..|++++...|
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 3466899999999999999999999987766
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-12 Score=124.33 Aligned_cols=252 Identities=8% Similarity=-0.054 Sum_probs=170.7
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
....|..+...+..+-..++.|++..|+..+.++ .+|+++....-++.++...|+. ++|+.++++
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~-------------~~A~~~~ek 93 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRD-------------QEVIDVYER 93 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCc-------------HHHHHHHHH
Confidence 3455667778899999999999999999999997 5888854444777778777754 568999999
Q ss_pred hccCCCCcHHHHHHH--HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 85 ALPQHEDHYAIHKWL--AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 85 al~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
++ +|.+...+..+ |.++...|++. +|++.|+++++.+|+++.++..++..+...++.
T Consensus 94 a~--~p~n~~~~~llalA~ly~~~gdyd----------~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~--------- 152 (822)
T PRK14574 94 YQ--SSMNISSRGLASAARAYRNEKRWD----------QALALWQSSLKKDPTNPDLISGMIMTQADAGRG--------- 152 (822)
T ss_pred hc--cCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH---------
Confidence 99 44444444444 77888888888 888899999999999998888887777776544
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh---hhh------
Q psy11738 163 AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC---FEI------ 233 (323)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~------ 233 (323)
++|+..+++++..+|++ .. +..++.++..+++..+|+..+++++..+|.+..... ..+
T Consensus 153 -----------~eAl~~l~~l~~~dp~~-~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 153 -----------GVVLKQATELAERDPTV-QN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred -----------HHHHHHHHHhcccCcch-HH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 77777777777777764 23 344555555566666677777777777777632211 000
Q ss_pred ----------------cchhHHHH--------------------------HHH--HHhhc--------------------
Q psy11738 234 ----------------TDMPWYQR--------------------------KIA--NAIFD-------------------- 249 (323)
Q Consensus 234 ----------------~~~~~~~~--------------------------~~a--~~~~~-------------------- 249 (323)
....|+.. .++ ..++.
T Consensus 220 ~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl 299 (822)
T PRK14574 220 EPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRL 299 (822)
T ss_pred HHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 00000000 000 00000
Q ss_pred --cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 250 --TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 250 --~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
-...+++.+++..|+.........+.-+....|.+|+..+++++|...|.+++.-+
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 01135677888888776644422223456778999999999999999999987754
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-13 Score=126.60 Aligned_cols=142 Identities=11% Similarity=0.024 Sum_probs=132.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
..|.++++++.||++....|.+ ++|...++.+++++|++..++..++.++...++++
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~-------------~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~e---------- 137 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRS-------------DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIE---------- 137 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCc-------------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHH----------
Confidence 4788899999999999998854 67999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
+|...+++++..+|+++.+++.+|.++...|.+ ++|+..|++++..+|++ +.++..+|.
T Consensus 138 eA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~--------------------~~A~~~y~~~~~~~p~~-~~~~~~~a~ 196 (694)
T PRK15179 138 AGRAEIELYFSGGSSSAREILLEAKSWDEIGQS--------------------EQADACFERLSRQHPEF-ENGYVGWAQ 196 (694)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch--------------------HHHHHHHHHHHhcCCCc-HHHHHHHHH
Confidence 899999999999999999999999999998765 99999999999999997 799999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++...|+.++|...|++++.......
T Consensus 197 ~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 197 SLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 99999999999999999998865544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-12 Score=106.00 Aligned_cols=205 Identities=15% Similarity=0.151 Sum_probs=166.7
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh-----HHHHHhhHHHH
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST-----TLFMLGMWCFE 149 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-----~~~~lg~~~~~ 149 (323)
.++|+..|-..++.+|...+++.-+|.++...|..+ .|++. .+.+-..|+-+. +...||.-|+.
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvD----------RAIRi-HQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVD----------RAIRI-HQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHH----------HHHHH-HHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999888 66644 455656676543 56677777777
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhh
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 229 (323)
.|-+ +.|...|..... .|.+...++..|..+|-...++++|++.-++..++.+......
T Consensus 120 aGl~--------------------DRAE~~f~~L~d-e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 120 AGLL--------------------DRAEDIFNQLVD-EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred hhhh--------------------hHHHHHHHHHhc-chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 7654 999999988776 4555568899999999999999999999999999988775432
Q ss_pred hhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh--
Q psy11738 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV-- 307 (323)
Q Consensus 230 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-- 307 (323)
++.++..+|-.... ..+++.|+..+.+|+..+|+. .++-..+|.++...|+++.|++.|+.+++.+|.
T Consensus 179 ------IAqfyCELAq~~~~---~~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 179 ------IAQFYCELAQQALA---SSDVDRARELLKKALQADKKC-VRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred ------HHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhhCccc-eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 22333334433332 578999999999999999998 899999999999999999999999999999998
Q ss_pred hHHHHHHHHHHhhh
Q psy11738 308 QEATKLLEKAKSYL 321 (323)
Q Consensus 308 ~~~~~~l~~~~~~~ 321 (323)
++.-+.|.++++-|
T Consensus 249 ~evl~~L~~~Y~~l 262 (389)
T COG2956 249 SEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHHHHHHHh
Confidence 66668888887655
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-13 Score=102.61 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=107.0
Q ss_pred HHHHccC-CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc
Q psy11738 127 NKAIELK-PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 205 (323)
Q Consensus 127 ~~al~l~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~ 205 (323)
.-...++ |++.+..|.+|..++..|++ ++|++.|+.+..++|.+ ...|++||.|+..+
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l--------------------~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~ 82 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEF--------------------AGAARLFQLLTIYDAWS-FDYWFRLGECCQAQ 82 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHhCccc-HHHHHHHHHHHHHH
Confidence 3346677 88889999999998888765 99999999999999998 69999999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHH
Q psy11738 206 ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 285 (323)
Q Consensus 206 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y 285 (323)
|++++|+..|.+|..+ +|++ +..++++|.||
T Consensus 83 g~~~~AI~aY~~A~~L------------------------------------------------~~dd-p~~~~~ag~c~ 113 (157)
T PRK15363 83 KHWGEAIYAYGRAAQI------------------------------------------------KIDA-PQAPWAAAECY 113 (157)
T ss_pred hhHHHHHHHHHHHHhc------------------------------------------------CCCC-chHHHHHHHHH
Confidence 9988888888777665 5555 67789999999
Q ss_pred HHhcCHHHHHHHHHHhhCC-CChhHHHHHHHHHHhhhc
Q psy11738 286 MRLENYEQAAYYLEMTKNY-PAVQEATKLLEKAKSYLK 322 (323)
Q Consensus 286 ~~~g~~~~A~~~~~~al~~-~~~~~~~~~l~~~~~~~~ 322 (323)
+..|+.+.|...|+.|+.+ ..+++...+-++++.+|.
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 9999999999999999998 566677778888887763
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-11 Score=109.18 Aligned_cols=254 Identities=15% Similarity=0.116 Sum_probs=180.9
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
+..+..+.++..++..|++++|+..++++ ..|.+..++.. +..+..+|+.... ...+...+......+
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 110 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGM---------RDHVARVLPLWAPEN 110 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccC---------chhHHHHHhccCcCC
Confidence 34555677888899999999999999987 58988877665 6677777765442 233444455566778
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|....++..+|.++...|++. +|...++++++++|+++.++..+|.+++..|++
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~----------~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~---------------- 164 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYD----------RAEEAARRALELNPDDAWAVHAVAHVLEMQGRF---------------- 164 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------------
Confidence 888888888899999999998 899999999999999999999999999998766
Q ss_pred CCCHHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc--hhh----h----hhhcc-
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFY---SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD--KDQ----C----FEITD- 235 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~----~----~~~~~- 235 (323)
++|+.++++++...|... ...+..+|.++...|++++|+..|++++...|... ... . ..+..
T Consensus 165 ----~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 165 ----KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred ----HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 999999999999977431 13466899999999999999999999987766221 100 0 00000
Q ss_pred ----hhHHHHHHHH-----------------HhhccCCCCcHHHHHHHHHHHHhhCCc---c-----hhhhhHHHHHHHH
Q psy11738 236 ----MPWYQRKIAN-----------------AIFDTLPTSSYEEALKYFLEAEKQHPL---F-----YSQNVLMLGKTYM 286 (323)
Q Consensus 236 ----~~~~~~~~a~-----------------~~~~~~~~~~~~~Al~~~~~a~~~~p~---~-----~~~~~~~lg~~y~ 286 (323)
..| ..++. ........++.++|...+......... . ...+....|.++.
T Consensus 241 ~~~~~~w--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 241 VDVGDRW--EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CChHHHH--HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 001 00000 011112356677777777665443211 0 1245667788888
Q ss_pred HhcCHHHHHHHHHHhhCCCCh
Q psy11738 287 RLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 287 ~~g~~~~A~~~~~~al~~~~~ 307 (323)
..|++++|+..+..++.+...
T Consensus 319 ~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 319 AEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred HcCCHHHHHHHHHHHHHHHHH
Confidence 999999999998888877544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.2e-12 Score=114.32 Aligned_cols=248 Identities=17% Similarity=0.135 Sum_probs=192.9
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|+.-..+|.++-..++.++|...+..++.+ ++|++++.+--.|-.++-+|+ -++|..+...+++.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~-------------~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK-------------KEEAYELVRLGLRN 70 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc-------------hHHHHHHHHHHhcc
Confidence 455566899999999999999999998887 699999988777777777774 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
|+...-.|..+|.++....++. +|+.+|..|++++|+|...+.-++.+-.+++++
T Consensus 71 d~~S~vCwHv~gl~~R~dK~Y~----------eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~--------------- 125 (700)
T KOG1156|consen 71 DLKSHVCWHVLGLLQRSDKKYD----------EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY--------------- 125 (700)
T ss_pred CcccchhHHHHHHHHhhhhhHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh---------------
Confidence 9999999999999999888888 999999999999999999999999988888766
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
+.........+++.|++ -..|+..+..+...|++..|...++...+......+...+..+..-.+...+
T Consensus 126 -----~~~~~tr~~LLql~~~~-ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i----- 194 (700)
T KOG1156|consen 126 -----EGYLETRNQLLQLRPSQ-RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI----- 194 (700)
T ss_pred -----hhHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-----
Confidence 88888888999999997 5889999999999999999999988777665322222221111111111110
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
....|.+++|++.+.+--..--+. .......|..+..+|++++|...|...+..+|++-
T Consensus 195 -~~E~g~~q~ale~L~~~e~~i~Dk-la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 195 -LIEAGSLQKALEHLLDNEKQIVDK-LAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred -HHHcccHHHHHHHHHhhhhHHHHH-HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 011466778877776533222222 23345668889999999999999999998888843
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-11 Score=106.15 Aligned_cols=241 Identities=12% Similarity=0.078 Sum_probs=186.2
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC---------c------------
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL---------S------------ 67 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~---------~------------ 67 (323)
++...-+...|+.++..|++.+|+..+++. .+|.+++..-..|..+..-|++.... +
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 344455677899999999999999999987 58888888777777776666654321 0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 68 DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
.-.-..+++.|+.+.+|++..+|.+..++...|.++..+++.. +|+-+|..|+.+.|..-+.|..|-.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~----------~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHT----------QAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchH----------HHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 0012456899999999999999999999999999999999999 888999999999999999999888888
Q ss_pred HHhcCCc-------HHHHHHHH-----HhhcC----CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 148 FEITDMP-------WYQRKIAN-----AIFDT----LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 148 ~~~~~~~-------~~~~~~~~-----~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
...+.+. |..+.+.+ .+++. ..-..-++|.+.++++++++|++ ..+-..++..+.+.|.++.+
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-TPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-HHHHHHHHHHHHhhCccchH
Confidence 8777552 22222221 12221 11223589999999999999997 68889999999999999999
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhh
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV 278 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~ 278 (323)
+..+++.+...|+...... ++..+-. .+.+++|+++|..|+.++|++ ..+.
T Consensus 458 i~LLe~~L~~~~D~~LH~~------------Lgd~~~A---~Ne~Q~am~~y~~ALr~dP~~-~~sl 508 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNH------------LGDIMRA---QNEPQKAMEYYYKALRQDPKS-KRTL 508 (564)
T ss_pred HHHHHHHHhhccccHHHHH------------HHHHHHH---hhhHHHHHHHHHHHHhcCccc-hHHH
Confidence 9999999998887643221 1211111 567999999999999999998 4443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-12 Score=119.11 Aligned_cols=140 Identities=14% Similarity=0.056 Sum_probs=79.7
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
.+.-.|++++++..+|.+....|.++ +|..++++++++.|++..++..++.++.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~----------ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~----------- 136 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSD----------EGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI----------- 136 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcH----------HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH-----------
Confidence 33444555555555555555555555 555555555555555555555555555554433
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
++|+..+++++..+|++ +.+++.+|.++..+|++++|+.+|++++
T Consensus 137 ---------eeA~~~~~~~l~~~p~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~------------------------- 181 (694)
T PRK15179 137 ---------EAGRAEIELYFSGGSSS-AREILLEAKSWDEIGQSEQADACFERLS------------------------- 181 (694)
T ss_pred ---------HHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhcchHHHHHHHHHHH-------------------------
Confidence 55555555555555554 4555555555555555555555555554
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..+|++ +.++..+|.++..+|+.++|...|++|++.
T Consensus 182 -----------------------~~~p~~-~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 182 -----------------------RQHPEF-ENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred -----------------------hcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555 566666666666666666666666666665
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-11 Score=111.97 Aligned_cols=259 Identities=17% Similarity=0.127 Sum_probs=184.8
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
..-.|.....+...|..+-..|+.++|+...-.+ .+|++.+.|.+++.....+| ++..|+-+|.+
T Consensus 166 Ikqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~-------------~i~qA~~cy~r 232 (895)
T KOG2076|consen 166 IKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG-------------NINQARYCYSR 232 (895)
T ss_pred HHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc-------------cHHHHHHHHHH
Confidence 3445666777888999999999999998876655 69999999999998877666 56779999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh-----HHHHHhhHHHHhc--------
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST-----TLFMLGMWCFEIT-------- 151 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-----~~~~lg~~~~~~~-------- 151 (323)
|+..+|.+....+..+.+|..+|+.. .|.+.|.+++.+.|.... .-+..+..+...+
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~----------~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLK----------RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHH----------HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999887 666677777777762110 0011111111111
Q ss_pred ----------------------------CCcHHHHHHHHHhh---------------cC---------------------
Q psy11738 152 ----------------------------DMPWYQRKIANAIF---------------DT--------------------- 167 (323)
Q Consensus 152 ----------------------------~~~~~~~~~~~~~~---------------~~--------------------- 167 (323)
.+.....++..... +.
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 11111111110000 00
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHH
Q psy11738 168 -------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQ 240 (323)
Q Consensus 168 -------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 240 (323)
+....-.+++.+|..--...|.....-++.++..|...|++.+|+.+|-.+....+...... +
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v----------w 452 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV----------W 452 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh----------h
Confidence 01122345555555444444655456789999999999999999999999998877665222 2
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 241 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
..+|.++.. .+.+++|++.|.+++.+.|++ .++.+.|+.+|..+|++++|.+.++...
T Consensus 453 ~~~a~c~~~---l~e~e~A~e~y~kvl~~~p~~-~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 453 YKLARCYME---LGEYEEAIEFYEKVLILAPDN-LDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHH---HhhHHHHHHHHHHHHhcCCCc-hhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 234444433 688999999999999999998 7999999999999999999999999876
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=122.91 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=171.2
Q ss_pred HHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHK 97 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 97 (323)
+++...+++...+..|- +.. -+|.+.+++..+..+|...+ ++++|+..++.+++..|+...+++
T Consensus 6 ~~~~~~~~~ee~~~r~~--~~~-~~p~n~~a~~~Li~~~~~~~-------------~~deai~i~~~~l~~~P~~i~~yy 69 (906)
T PRK14720 6 IDKLTSLLNEEKWTRAD--ANN-YSLSKFKELDDLIDAYKSEN-------------LTDEAKDICEEHLKEHKKSISALY 69 (906)
T ss_pred HHHHHHHhhhhhhhhcc--ccc-CCcchHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHHhCCcceehHH
Confidence 34444445444444431 000 38899999999999997777 457799999999999999999999
Q ss_pred HHHHHHHHhhcccchHHH-----H--HhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 98 WLAVILNEKATLEGTKAR-----I--QQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~-----~--~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
.+|.++...+++.....- . ..-..+.+++...+-..|++..+++.||.||-.+|+.
T Consensus 70 ~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~----------------- 132 (906)
T PRK14720 70 ISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNEN----------------- 132 (906)
T ss_pred HHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh-----------------
Confidence 999998888886532110 0 0111445666666666777779999999999888766
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
++|...|+++++++|++ +.++.++|..|... +.++|++++.+|+... +
T Consensus 133 ---~ka~~~yer~L~~D~~n-~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~----------------i----------- 180 (906)
T PRK14720 133 ---KKLKGVWERLVKADRDN-PEIVKKLATSYEEE-DKEKAITYLKKAIYRF----------------I----------- 180 (906)
T ss_pred ---HHHHHHHHHHHhcCccc-HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH----------------H-----------
Confidence 99999999999999998 79999999999999 9999999999998751 0
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhh--------------------hHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQN--------------------VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~--------------------~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
+.++|.++.+.+.+.+..+|++ .+. +..+=.+|...+++++++.+++.+|+++|.+
T Consensus 181 -~~kq~~~~~e~W~k~~~~~~~d-~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n 256 (906)
T PRK14720 181 -KKKQYVGIEEIWSKLVHYNSDD-FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN 256 (906)
T ss_pred -hhhcchHHHHHHHHHHhcCccc-chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc
Confidence 1346777888888888888865 232 2223388899999999999999999998774
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-11 Score=98.61 Aligned_cols=182 Identities=14% Similarity=0.044 Sum_probs=155.0
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
..+...+-+....+|++..+ ..++..+...|+-. .+.....++..-.|.+......+|...+..|++
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~----------~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~-- 116 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDAD----------SSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNF-- 116 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhccccc----------chHHHHhhhhccCcccHHHHHHHHHHHHHhcch--
Confidence 44777778889999999999 99999999998877 566678888888999999998899998888766
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITD 235 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 235 (323)
..|+..|.++.+++|++ ..+|..+|.+|.+.|++++|...|.+++++.|+++.... +
T Consensus 117 ------------------~~A~~~~rkA~~l~p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n----N 173 (257)
T COG5010 117 ------------------GEAVSVLRKAARLAPTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN----N 173 (257)
T ss_pred ------------------HHHHHHHHHHhccCCCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh----h
Confidence 99999999999999998 699999999999999999999999999999999876432 2
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
++.... -.|+++.|..++.++...-+.+ ..+..+|+.+-...|++.+|...-.+-+..
T Consensus 174 lgms~~----------L~gd~~~A~~lll~a~l~~~ad-~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 174 LGMSLL----------LRGDLEDAETLLLPAYLSPAAD-SRVRQNLALVVGLQGDFREAEDIAVQELLS 231 (257)
T ss_pred HHHHHH----------HcCCHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence 222111 1689999999999999988877 688999999999999999998876654433
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.4e-11 Score=107.09 Aligned_cols=255 Identities=15% Similarity=0.089 Sum_probs=187.7
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC--------------------cHHHHHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL--------------------SDADKKQLI 75 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~--------------------~~~~~~~~~ 75 (323)
+--+......|+...|..++..+ ..|++-++++---..-....++.... .-+..++..
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhH
Confidence 34445555567777777777665 36666665543333332222211000 134567788
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++|+.+++.+++..|+....+..+|.++..+++.+ .|++.|...++.-|+.+-.|..|+.+--..|..
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie----------~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~-- 735 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE----------MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL-- 735 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH----------HHHHHHHhccccCCCCchHHHHHHHHHHHhcch--
Confidence 99999999999999999999999999999888888 788889999999999999999999887776665
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh--
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI-- 233 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-- 233 (323)
-.|...+.++.-.+|++ ...|+..-.+-.+.|..++|....-+|++..|.+.......+
T Consensus 736 ------------------~rAR~ildrarlkNPk~-~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 736 ------------------VRARSILDRARLKNPKN-ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred ------------------hhHHHHHHHHHhcCCCc-chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 88999999999999998 688888888899999999999999999999998842211000
Q ss_pred --------cch---------hHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHH
Q psy11738 234 --------TDM---------PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 296 (323)
Q Consensus 234 --------~~~---------~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~ 296 (323)
... .-....++..+.. ..++++|.++|.++++.+|++ .++|..+=..+...|.-+.=.+
T Consensus 797 e~~~~rkTks~DALkkce~dphVllaia~lfw~---e~k~~kar~Wf~Ravk~d~d~-GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS---EKKIEKAREWFERAVKKDPDN-GDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred ccCcccchHHHHHHHhccCCchhHHHHHHHHHH---HHHHHHHHHHHHHHHccCCcc-chHHHHHHHHHHHhCCHHHHHH
Confidence 000 0000112222222 456889999999999999988 6888888888888888888888
Q ss_pred HHHHhhCCCCh
Q psy11738 297 YLEMTKNYPAV 307 (323)
Q Consensus 297 ~~~~al~~~~~ 307 (323)
.+.+...-.|.
T Consensus 873 v~~~c~~~EP~ 883 (913)
T KOG0495|consen 873 VLKKCETAEPT 883 (913)
T ss_pred HHHHHhccCCC
Confidence 88888877776
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-12 Score=115.56 Aligned_cols=214 Identities=17% Similarity=0.170 Sum_probs=160.5
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC--------CCCcHHHHHHHHHHHHHhhcccchH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ--------HEDHYAIHKWLAVILNEKATLEGTK 113 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~ 113 (323)
+|.-..+...++..|...| +|++|+..+++|+++ .|.-.....++|.+|..++++.
T Consensus 195 ~P~~~~~~~~La~~y~~~g-------------~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~--- 258 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQG-------------RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYD--- 258 (508)
T ss_pred CchHHHHHHHHHHHHHHhc-------------cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHH---
Confidence 6666666666777777766 567789999999888 7777777778999999999998
Q ss_pred HHHHhHHHHHHHHHHHHcc--------CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q psy11738 114 ARIQQLETIKHHMNKAIEL--------KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185 (323)
Q Consensus 114 ~~~~~~~~a~~~~~~al~l--------~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 185 (323)
+|+..|++|+.+ +|.-..++.+||.+|+..|.+ .+|..++++|++
T Consensus 259 -------eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf--------------------~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 259 -------EAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKF--------------------AEAEEYCERALE 311 (508)
T ss_pred -------HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCCh--------------------HHHHHHHHHHHH
Confidence 888889998876 344456789999999887655 889999998888
Q ss_pred c-------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHH
Q psy11738 186 Q-------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEE 258 (323)
Q Consensus 186 ~-------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (323)
+ .+...+..+.+++.++..++++++|+.++++++++-.+....... .++-+...++..++. +|+|++
T Consensus 312 I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~---~~a~~~~nl~~l~~~---~gk~~e 385 (508)
T KOG1840|consen 312 IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV---NLAKIYANLAELYLK---MGKYKE 385 (508)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch---HHHHHHHHHHHHHHH---hcchhH
Confidence 7 222234668889999999999999999999999874311100000 112223334444443 799999
Q ss_pred HHHHHHHHHhhC--------CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 259 ALKYFLEAEKQH--------PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 259 Al~~~~~a~~~~--------p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
|.+.|++|+... +.. ...+.+||..|..++++.+|...|.+++.+.
T Consensus 386 a~~~~k~ai~~~~~~~~~~~~~~-~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 386 AEELYKKAIQILRELLGKKDYGV-GKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHHHHHhcccCcChhh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999999875 222 3457789999999999999999999888775
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-11 Score=118.49 Aligned_cols=202 Identities=8% Similarity=-0.097 Sum_probs=163.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
..|+.+...+..+.+....|++ ..|+..++++++.+|.++.+..-+..++...|+..
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~-------------~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~---------- 85 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDT-------------APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQ---------- 85 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCH-------------HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcH----------
Confidence 4778888888888888887754 56999999999999999644447777788888888
Q ss_pred HHHHHHHHHHccCCCChhHHHHH--hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFML--GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~l--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
+|..++++++ +|.+...+..+ |.++...|++ ++|+..|+++++.+|++ +.++..+
T Consensus 86 ~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdy--------------------d~Aiely~kaL~~dP~n-~~~l~gL 142 (822)
T PRK14574 86 EVIDVYERYQ--SSMNISSRGLASAARAYRNEKRW--------------------DQALALWQSSLKKDPTN-PDLISGM 142 (822)
T ss_pred HHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhhCCCC-HHHHHHH
Confidence 8999999999 66555555555 7788887655 99999999999999998 7999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV 278 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~ 278 (323)
+.+|...++.++|++.++++...+|.+... + .++....+ .++..+|+..++++++.+|++ ...+
T Consensus 143 a~~y~~~~q~~eAl~~l~~l~~~dp~~~~~----l--------~layL~~~---~~~~~~AL~~~ekll~~~P~n-~e~~ 206 (822)
T PRK14574 143 IMTQADAGRGGVVLKQATELAERDPTVQNY----M--------TLSYLNRA---TDRNYDALQASSEAVRLAPTS-EEVL 206 (822)
T ss_pred HHHHhhcCCHHHHHHHHHHhcccCcchHHH----H--------HHHHHHHh---cchHHHHHHHHHHHHHhCCCC-HHHH
Confidence 999999999999999999999999884321 1 11111111 466767999999999999998 7888
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 279 LMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 279 ~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..+..+....|-..-|.+..++--.+
T Consensus 207 ~~~~~~l~~~~~~~~a~~l~~~~p~~ 232 (822)
T PRK14574 207 KNHLEILQRNRIVEPALRLAKENPNL 232 (822)
T ss_pred HHHHHHHHHcCCcHHHHHHHHhCccc
Confidence 99999999999999998877764433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-12 Score=97.97 Aligned_cols=108 Identities=15% Similarity=0.027 Sum_probs=101.2
Q ss_pred hhccCC-CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 84 NALPQH-EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 84 ~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
.+..+. |+.-+..+.+|..+...|++. +|...|..+..++|.++..|++||.++..+|++
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~----------~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~--------- 85 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFA----------GAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW--------- 85 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH---------
Confidence 445677 888899999999999999999 899999999999999999999999999999766
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 163 AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
++|+..|.+++.++|++ +.+++++|.||...|+.+.|.+.|+.++...
T Consensus 86 -----------~~AI~aY~~A~~L~~dd-p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 86 -----------GEAIYAYGRAAQIKIDA-PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -----------HHHHHHHHHHHhcCCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999998 7999999999999999999999999999876
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-11 Score=107.00 Aligned_cols=50 Identities=8% Similarity=0.131 Sum_probs=38.3
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSS 64 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~ 64 (323)
....-..|+..+...+|..|+..+..+ .+ .++..+...+-+|..+|.+..
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~ 275 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAE 275 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHH
Confidence 334556778888888999999988886 35 777788888888888887654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-11 Score=114.62 Aligned_cols=233 Identities=10% Similarity=0.027 Sum_probs=170.5
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc-----HHHHHHHHHHHH
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS-----DADKKQLILSAY 79 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~-----~~~~~~~~~~A~ 79 (323)
...+|...+.+...+..+...|++++|+.++... ..|+.+.+++.+|.++...++...+.. .......+ .++
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~v 102 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIV 102 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHH
Confidence 4567788888888999999999999999999976 599999999999999998888655420 11112223 567
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 80 FLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 80 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
.++...+-..|++..+++.+|.||..+|+.. ++...|+++++++|+|+.+..++|..+... ++
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~----------ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL------ 165 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENK----------KLKGVWERLVKADRDNPEIVKKLATSYEEE-DK------ 165 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChH----------HHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hH------
Confidence 7777777778888899999999999999999 899999999999999999999999888776 66
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh---hh-cc
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF---EI-TD 235 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~-~~ 235 (323)
++|+.++.+|++. |...+++.++.++..+.+..+|.+.+.... .+ ..
T Consensus 166 --------------~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~ 216 (906)
T PRK14720 166 --------------EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGH 216 (906)
T ss_pred --------------HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhh
Confidence 7777777777664 334456666667677777666666433110 00 00
Q ss_pred hh--HHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH
Q psy11738 236 MP--WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 287 (323)
Q Consensus 236 ~~--~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~ 287 (323)
+. -.-..+-.........++|++++..++.+++.+|.+ ..+.+.++.||..
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n-~~a~~~l~~~y~~ 269 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN-NKAREELIRFYKE 269 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc-hhhHHHHHHHHHH
Confidence 00 000000000001123678999999999999999998 6889999999983
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-12 Score=105.92 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=107.5
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
...++.+-.+|+.+++.++|++|+..|..+ .+|.|+-++...|.+|+.+|.+ +.|++.+++|+.+
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~-------------~~AVkDce~Al~i 144 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY-------------EDAVKDCESALSI 144 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch-------------HHHHHHHHHHHhc
Confidence 344566777999999999999999999998 5999999999999999999854 5699999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
||....+|..+|.+|..+|+++ +|++.|+++|+++|+|...+..|.++-...+..
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~----------~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYE----------EAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHH----------HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999 899999999999999998888888776665543
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-12 Score=104.49 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH
Q psy11738 70 DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~ 149 (323)
.+.++|++|+..|.+||+++|.|+-.|-+.+-+|..+|+++ .|++.++.|+.+||....+|-.||.+|+.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~----------~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYE----------DAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchH----------HHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 35677888888888888888888888888888888888888 77888888888888888888888888888
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHH
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYE 209 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~ 209 (323)
+|++ .+|+..|+|+|+++|++ .....+|..+--.+++..
T Consensus 162 ~gk~--------------------~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKY--------------------EEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcH--------------------HHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 7654 88888888888888887 466666655544444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-10 Score=95.45 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=133.7
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccc
Q psy11738 33 VNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEG 111 (323)
Q Consensus 33 A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 111 (323)
+..+.... ..|++.++ .+++..+...|+-.. +..+..++..-+|.+.+.+.-+|......|++.
T Consensus 53 ~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~-------------~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~- 117 (257)
T COG5010 53 AAALGAAVLRNPEDLSI-AKLATALYLRGDADS-------------SLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFG- 117 (257)
T ss_pred HHHHHHHHhcCcchHHH-HHHHHHHHhcccccc-------------hHHHHhhhhccCcccHHHHHHHHHHHHHhcchH-
Confidence 34444444 69999999 999999999997765 688888888899999998888999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch
Q psy11738 112 TKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY 191 (323)
Q Consensus 112 ~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 191 (323)
+|...+.++..++|+|+.+|..+|.+|.+.|+. ++|...|.+++++.|+.
T Consensus 118 ---------~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~--------------------~~Ar~ay~qAl~L~~~~- 167 (257)
T COG5010 118 ---------EAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF--------------------DEARRAYRQALELAPNE- 167 (257)
T ss_pred ---------HHHHHHHHHhccCCCChhhhhHHHHHHHHccCh--------------------hHHHHHHHHHHHhccCC-
Confidence 899999999999999999999999999998766 99999999999999998
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
+.+..++|..|.-.|+++.|..++..+....+.+..
T Consensus 168 p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 168 PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 699999999999999999999999999887776653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-09 Score=101.24 Aligned_cols=243 Identities=17% Similarity=0.183 Sum_probs=167.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
.+-++=++..+...|++++|+.++.+. .-.+...++...|+++..+|+ +++|...+...++.+|+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~-------------~~eA~~~y~~Li~rNPd 70 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGR-------------KEEAEKIYRELIDRNPD 70 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCCC
Confidence 345566788888999999999999886 467788899999999999884 47799999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccc--hHHHHHhHHH---------------------------HHHHHHHHHcc----------
Q psy11738 92 HYAIHKWLAVILNEKATLEG--TKARIQQLET---------------------------IKHHMNKAIEL---------- 132 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------------------a~~~~~~al~l---------- 132 (323)
|...+..+..+++....... .......+.+ +..++...+..
T Consensus 71 n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk 150 (517)
T PF12569_consen 71 NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLK 150 (517)
T ss_pred cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99998888888744442111 0000000000 00111111110
Q ss_pred ----CCC-------------------------------Ch----hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 133 ----KPD-------------------------------DS----TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 133 ----~p~-------------------------------~~----~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
+|. .| .+++.++..|... |++
T Consensus 151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~--------------------g~~ 210 (517)
T PF12569_consen 151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL--------------------GDY 210 (517)
T ss_pred HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh--------------------CCH
Confidence 000 01 1223344443333 566
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
++|+.++++|++..|+. ++.++..|.+|.+.|++++|..+++.|-++|+.|-.. ..+.+..++. .
T Consensus 211 ~~Al~~Id~aI~htPt~-~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi-----------NsK~aKy~LR---a 275 (517)
T PF12569_consen 211 EKALEYIDKAIEHTPTL-VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYI-----------NSKCAKYLLR---A 275 (517)
T ss_pred HHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH-----------HHHHHHHHHH---C
Confidence 99999999999999997 7999999999999999999999999999998776321 1112222222 6
Q ss_pred CcHHHHHHHHHHHHhhCCcchh------hhh--HHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 254 SSYEEALKYFLEAEKQHPLFYS------QNV--LMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~~------~~~--~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
|+.++|...+..-+.-+-+... -.| ..-|.+|.+.|++..|+..|..+.++
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8899999888776655421101 123 44599999999999999999888766
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-10 Score=108.97 Aligned_cols=207 Identities=16% Similarity=0.059 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
.+...|+..+-++++++|..+.++..+|.+|...-+.. .|..+|.+|.++||.+..++-..+..|.+..+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~----------RA~kCf~KAFeLDatdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMK----------RAKKCFDKAFELDATDAEAAAASADTYAEEST 541 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcCCchhhhhHHHHHHHhhcccc
Confidence 34788999999999999999999999999998877555 78999999999999999999999988887776
Q ss_pred CcHHHHH--------------HHHHhhcC--CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11738 153 MPWYQRK--------------IANAIFDT--LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 216 (323)
Q Consensus 153 ~~~~~~~--------------~~~~~~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 216 (323)
+...... ......+. ++.+....|+.+|+-+++.+|.+ ...|..+|.+|...|++.-|++.|.
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-YNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh-HHHHHHHHHHHHhcCceehHHHhhh
Confidence 6322111 11111222 35677899999999999999998 5999999999999999999999999
Q ss_pred HHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc------hhhhhHHHHHHHHHhcC
Q psy11738 217 MTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 217 ~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~------~~~~~~~lg~~y~~~g~ 290 (323)
+|..++|.+...++ ..+-+ ..+.|+|.+|+..+...+...... .+..+.+++..+.-.|=
T Consensus 621 kAs~LrP~s~y~~f-k~A~~-------------ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf 686 (1238)
T KOG1127|consen 621 KASLLRPLSKYGRF-KEAVM-------------ECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGF 686 (1238)
T ss_pred hhHhcCcHhHHHHH-HHHHH-------------HHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99999998865433 11111 113789999999888877654432 12345555555555666
Q ss_pred HHHHHHHHHHhhCC
Q psy11738 291 YEQAAYYLEMTKNY 304 (323)
Q Consensus 291 ~~~A~~~~~~al~~ 304 (323)
...|..+++++++.
T Consensus 687 ~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 687 QKKAVDFFEKSIES 700 (1238)
T ss_pred hhhhhHHHHHHHHH
Confidence 66777777776654
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-10 Score=91.27 Aligned_cols=170 Identities=15% Similarity=0.034 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
+.+-|..++++.-..-|....+-...|..+...|++. +|+++|+..++-||.|...+...-.+.-.+|
T Consensus 67 ~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~----------~A~e~y~~lL~ddpt~~v~~KRKlAilka~G-- 134 (289)
T KOG3060|consen 67 RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK----------EAIEYYESLLEDDPTDTVIRKRKLAILKAQG-- 134 (289)
T ss_pred chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh----------hHHHHHHHHhccCcchhHHHHHHHHHHHHcC--
Confidence 4566899999988888999999888899999999998 8999999999999999887765444444444
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
+-.+||+.+.+-++..+++ .++|..++.+|...|+|++|.-||+..+-+.|.++.-
T Consensus 135 ------------------K~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~----- 190 (289)
T KOG3060|consen 135 ------------------KNLEAIKELNEYLDKFMND-QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY----- 190 (289)
T ss_pred ------------------CcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH-----
Confidence 3389999999999999998 7999999999999999999999999999999998632
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHH
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 286 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~ 286 (323)
...++..+|-.....+++-|..+|.++++++|.+ .+.++.+-.|-.
T Consensus 191 ------f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI~lc~~ 236 (289)
T KOG3060|consen 191 ------FQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGIYLCGS 236 (289)
T ss_pred ------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHHHHHHH
Confidence 2223333332333568899999999999999976 577666654443
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-09 Score=100.24 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhhccCC-----CCcHHHHHHHHHHHHHhhcccch-HHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 72 KQLILSAYFLVYNALPQH-----EDHYAIHKWLAVILNEKATLEGT-KARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
.+.+++++.|..+++... --.+.++..+|++|+.+...... ..+.....++.+.++++++.+|+|+.+.++++.
T Consensus 407 l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal 486 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL 486 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 456788999999998832 22455788899999988765533 234456668889999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 146 WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
-|-..+++ +.|..+.++++++++++.+.+|..|+.++.-.+++..|+...+.++...|+|
T Consensus 487 q~A~~R~l--------------------~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 487 QYAEQRQL--------------------TSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred HHHHHHhH--------------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 88877766 9999999999999777667899999999999999999999999999888874
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-10 Score=93.44 Aligned_cols=160 Identities=13% Similarity=0.030 Sum_probs=135.5
Q ss_pred HHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHH
Q psy11738 24 LFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAV 101 (323)
Q Consensus 24 ~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 101 (323)
.+-.|+.+-|..+++.+ ++|+...+...-|.-+-..| ++++|+++++..++-||.|.-++...-.
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~-------------~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG-------------NYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh-------------chhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 34468888888888876 57888776666666665544 6678999999999999999999887777
Q ss_pred HHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q psy11738 102 ILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 181 (323)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 181 (323)
+.-.+|+.. +|++.+...++..|.|.++|+.++.+|+..+++ ++|.-+++
T Consensus 129 ilka~GK~l----------~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f--------------------~kA~fClE 178 (289)
T KOG3060|consen 129 ILKAQGKNL----------EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF--------------------EKAAFCLE 178 (289)
T ss_pred HHHHcCCcH----------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH--------------------HHHHHHHH
Confidence 777788777 788899999999999999999999999999766 99999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHcCCH---HHHHHHHHHHhCCCCCCch
Q psy11738 182 EAEKQHPLFYSQNVLMLGKTYMRLENY---EQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 182 ~al~~~p~~~~~~~~~lg~~y~~~g~~---~~A~~~~~~al~~~~~~~~ 227 (323)
+.+=+.|.+ +..+..+|.+++-+|.. .-|.++|.++++++|++..
T Consensus 179 E~ll~~P~n-~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 179 ELLLIQPFN-PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 999999998 68889999999888864 4699999999999996543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=102.67 Aligned_cols=162 Identities=9% Similarity=0.021 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhhc---cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 74 LILSAYFLVYNAL---PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 74 ~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
..+.|+.+|.+|+ +++|..+.++-+++.|+.......... ......+|.++..+|++++|.|+.++..+|.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 4577999999999 999999999999999988764432222 334555888999999999999999999999988777
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
+++ +.|+..|++|+.++|+. +.+++..|.+....|+.++|+.+++++++++|.-..+..
T Consensus 352 ~~~--------------------~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 352 GQA--------------------KVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred cch--------------------hhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 655 99999999999999997 799999999999999999999999999999998654433
Q ss_pred hhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC
Q psy11738 231 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 270 (323)
Q Consensus 231 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~ 270 (323)
.++ |. ..++ ....++|+..|-+-.+..
T Consensus 411 ~~~----~~-----~~~~----~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 411 IKE----CV-----DMYV----PNPLKNNIKLYYKETESE 437 (458)
T ss_pred HHH----HH-----HHHc----CCchhhhHHHHhhccccc
Confidence 222 21 1111 345678887776654433
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-09 Score=97.28 Aligned_cols=257 Identities=16% Similarity=0.071 Sum_probs=190.8
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
+.....+..++.+...+.++=|...|..+ .+|..-.+|.+.+..-..-|. .++-..++++|+..-
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt-------------~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT-------------RESLEALLQKAVEQC 580 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc-------------HHHHHHHHHHHHHhC
Confidence 33444677888888888888888888876 488888887777665554443 244567788888888
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC-
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL- 168 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~- 168 (323)
|+....+...+.-+-..|+.- .|+..+..|++.+|++.+.|..--.+.+....+....+.++.++....
T Consensus 581 pkae~lwlM~ake~w~agdv~----------~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 581 PKAEILWLMYAKEKWKAGDVP----------AARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred CcchhHHHHHHHHHHhcCCcH----------HHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 877776666666666666665 667778888888888777776655555555444444444333322110
Q ss_pred ------------CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcch
Q psy11738 169 ------------PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDM 236 (323)
Q Consensus 169 ------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 236 (323)
.++..++|++.++++++..|++ ...|+++|.++.++++.+.|.+.|...++..|+...... .++.+
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f-~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl-lLakl 728 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDF-HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL-LLAKL 728 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch-HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH-HHHHH
Confidence 1344599999999999999997 699999999999999999999999999999999865422 22111
Q ss_pred hHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 237 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.. ..|....|...+.++.-.+|.+ ...|...-..-.+.|..+.|.....+||.--|.
T Consensus 729 ---eE----------k~~~~~rAR~ildrarlkNPk~-~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 729 ---EE----------KDGQLVRARSILDRARLKNPKN-ALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred ---HH----------HhcchhhHHHHHHHHHhcCCCc-chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 11 1457889999999999999998 788888888888999999999999998877665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-10 Score=106.76 Aligned_cols=155 Identities=14% Similarity=0.045 Sum_probs=121.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
.-|.+.+++-..-+....+.... .+.+..|+.+|++|++++|+++.++..++.++.....+....+ ....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~--------~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~--~~l~ 401 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGD--------AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDE--KQLA 401 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccH--HHHH
Confidence 46777777765555544443332 2357789999999999999999999999988877655543111 1223
Q ss_pred HHHHHHHHHHcc--CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 121 TIKHHMNKAIEL--KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 121 ~a~~~~~~al~l--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
.+.+...+++.+ +|.++.++..+|..+...|++ ++|..++++|+.++|+ ..+|..+
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~--------------------~~A~~~l~rAl~L~ps--~~a~~~l 459 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKT--------------------DEAYQAINKAIDLEMS--WLNYVLL 459 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcCCC--HHHHHHH
Confidence 555667777774 888888999999887776554 9999999999999995 4899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
|.++...|++++|++.|++|+.++|.++.
T Consensus 460 G~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 460 GKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999874
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-09 Score=96.15 Aligned_cols=274 Identities=14% Similarity=0.105 Sum_probs=171.3
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.-|+..+.+--+|-.+-..|+-++|....... .++...--|.-+|-++.... .|++|+.+|..|+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK-------------~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK-------------KYDEAIKCYRNAL 102 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh-------------hHHHHHHHHHHHH
Confidence 45667788888899999999999999988876 36666555656666654433 6788999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.++|+|...+.-++.+...++++.+ ....-.+.+++.|.+-..|..++..+.-.|++......+......
T Consensus 103 ~~~~dN~qilrDlslLQ~QmRd~~~----------~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 103 KIEKDNLQILRDLSLLQIQMRDYEG----------YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred hcCCCcHHHHHHHHHHHHHHHhhhh----------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999984 334455667777777766766666666655442211111110000
Q ss_pred C--------------------------------------------------------CCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 167 T--------------------------------------------------------LPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 167 ~--------------------------------------------------------~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
. ...+++++|+..|...+..+|++
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 0 12345566666666666666665
Q ss_pred hhHHHHHHHHHHHHcCCHHHHH-HHHHHHhCCCCCCchhhhh-------------------------------hhcchhH
Q psy11738 191 YSQNVLMLGKTYMRLENYEQAA-YYLEMTKNYPVKQDKDQCF-------------------------------EITDMPW 238 (323)
Q Consensus 191 ~~~~~~~lg~~y~~~g~~~~A~-~~~~~al~~~~~~~~~~~~-------------------------------~~~~~~~ 238 (323)
...+..+-.++-...+.-+++ ..|...-+..|....-..+ .+..+.-
T Consensus 253 -~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 253 -LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred -HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 233333333332222222333 3333333333332100000 0000000
Q ss_pred ------HHHHHHHHhhc--------------------------------cCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 239 ------YQRKIANAIFD--------------------------------TLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 239 ------~~~~~a~~~~~--------------------------------~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
+...++..+.. ....|+++.|+.+...|+.-.|.. ...+..
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl-iEly~~ 410 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL-IELYLV 410 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH-HHHHHH
Confidence 00011111100 011477999999999999999998 788999
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 281 LGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 281 lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
-|.++.+.|++++|..++..+-+++..
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhccch
Confidence 999999999999999999999999655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.1e-11 Score=105.23 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=104.5
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
..+..+|..++..|+|++|+.++.++ .+|+++.+++.+|.+|..+|+ +++|+..+++++.++|.+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~-------------~~eAl~~~~~Al~l~P~~ 69 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN-------------FTEAVADANKAIELDPSL 69 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCcCC
Confidence 45788999999999999999999998 599999999999999999885 567999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
+.+++.+|.++..+|++. +|+..|+++++++|+++.+...++.+...+
T Consensus 70 ~~a~~~lg~~~~~lg~~~----------eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQ----------TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999 899999999999999999999999886554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-08 Score=102.60 Aligned_cols=258 Identities=10% Similarity=0.040 Sum_probs=118.4
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHhcccCCCCc-----------H-----------HHH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESSE---YKEDVEIIWRLVRVKYNLATHSSSLS-----------D-----------ADK 71 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~la~~y~~~~~~~~~~~-----------~-----------~~~ 71 (323)
+-.....+.+.|++++|..+++.+. -.-+..++..+...|...|+...... + --+
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3344444555566666666555541 12244555555555555554322100 0 001
Q ss_pred HHHHHHHHHHHHhhcc----CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-CCChhHHHHHhhH
Q psy11738 72 KQLILSAYFLVYNALP----QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-PDDSTTLFMLGMW 146 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p~~~~~~~~lg~~ 146 (323)
.+.+++|...++.... +.|+ ...+..+-..|...|+++ +|.+.|+.+.+.+ +.+...|..+...
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ld----------eA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVD----------RAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 2234556666666543 3443 334444555566666665 6666676666665 3455566666666
Q ss_pred HHHhcCCcHHHHHHHHHhhc---------------CCCCCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHcCCHH
Q psy11738 147 CFEITDMPWYQRKIANAIFD---------------TLPTSSYEEALKYFLEAEKQH--PLFYSQNVLMLGKTYMRLENYE 209 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~y~~~g~~~ 209 (323)
|...|++......+...... -...|++++|...|....+.. |+ ..++..|..+|.+.|+++
T Consensus 624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG--TVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHH
Confidence 66666542221111111100 012344455555555555432 22 244555555555555555
Q ss_pred HHHHHHHHHhCC--CCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh--hCCcchhhhhHHHHHHH
Q psy11738 210 QAAYYLEMTKNY--PVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK--QHPLFYSQNVLMLGKTY 285 (323)
Q Consensus 210 ~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~--~~p~~~~~~~~~lg~~y 285 (323)
+|.+.|++..+. .|+.. .+.. +...+ ...|++++|++.|.+... +.|+ ...+..+-.++
T Consensus 702 eA~~lf~eM~~~g~~Pdvv--tyN~----------LI~gy---~k~G~~eeAlelf~eM~~~Gi~Pd--~~Ty~sLL~a~ 764 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVS--TMNA----------LITAL---CEGNQLPKALEVLSEMKRLGLCPN--TITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHH--HHHH----------HHHHH---HHCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Confidence 555555544332 12110 0000 01111 114555555555554432 2343 23444455555
Q ss_pred HHhcCHHHHHHHHHHhhCC
Q psy11738 286 MRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 286 ~~~g~~~~A~~~~~~al~~ 304 (323)
...|+.++|...+.+.++.
T Consensus 765 ~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHc
Confidence 5555555555555555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.4e-11 Score=104.76 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
++++|+.+|.++++++|+++.++..+|.++..+|++. +|+..+++++.++|+++.+++.+|.+++.+|++
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~----------eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFT----------EAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 5678999999999999999999999999999999998 899999999999999999999999999998765
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 206 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g 206 (323)
++|+.+|+++++++|++ ..+...++.|..++.
T Consensus 87 --------------------~eA~~~~~~al~l~P~~-~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 87 --------------------QTAKAALEKGASLAPGD-SRFTKLIKECDEKIA 118 (356)
T ss_pred --------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHH
Confidence 99999999999999998 688888998876664
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=81.61 Aligned_cols=68 Identities=29% Similarity=0.456 Sum_probs=63.1
Q ss_pred CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC-CHHHHHH
Q psy11738 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE-NYEQAAY 213 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g-~~~~A~~ 213 (323)
+++..|..+|.+++..+++ ++|+.+|+++++++|++ +.+++++|.+|..+| ++++|+.
T Consensus 1 e~a~~~~~~g~~~~~~~~~--------------------~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDY--------------------EEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHH--------------------HHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHH
Confidence 3678899999999998765 99999999999999998 799999999999999 7999999
Q ss_pred HHHHHhCCCC
Q psy11738 214 YLEMTKNYPV 223 (323)
Q Consensus 214 ~~~~al~~~~ 223 (323)
.++++++++|
T Consensus 60 ~~~~al~l~P 69 (69)
T PF13414_consen 60 DFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHcCc
Confidence 9999999987
|
... |
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-11 Score=106.11 Aligned_cols=262 Identities=15% Similarity=0.128 Sum_probs=130.4
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH------hhc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESSE--YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY------NAL 86 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~------~al 86 (323)
-++-.+|+++.+.|+++.-+.+++.+. -.++ +-.+.-+|+.+|+.... .+.|.+|++|-. +.+
T Consensus 18 leLalEGERLck~gdcraGv~ff~aA~qvGTeD---l~tLSAIYsQLGNAyfy------L~DY~kAl~yH~hDltlar~l 88 (639)
T KOG1130|consen 18 LELALEGERLCKMGDCRAGVDFFKAALQVGTED---LSTLSAIYSQLGNAYFY------LKDYEKALKYHTHDLTLARLL 88 (639)
T ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHhcchH---HHHHHHHHHHhcchhhh------HhhHHHHHhhhhhhHHHHHHh
Confidence 346779999999999999999999872 2222 23345566666655443 334444554432 222
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC------CChhHHHHHhhHHHHhcCCcHHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP------DDSTTLFMLGMWCFEITDMPWYQRKI 160 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p------~~~~~~~~lg~~~~~~~~~~~~~~~~ 160 (323)
.-.-..+.+--++|.++-.+|.+. +|+-++.+-+.+.. ....++|++|.+|...|..-....--
T Consensus 89 gdklGEAKssgNLGNtlKv~G~fd----------eA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe 158 (639)
T KOG1130|consen 89 GDKLGEAKSSGNLGNTLKVKGAFD----------EALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE 158 (639)
T ss_pred cchhccccccccccchhhhhcccc----------hHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh
Confidence 111112223345667777777777 66666555554432 25678999999999887541100000
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhcCCCc--h---hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh--hhh
Q psy11738 161 ANAIFDTLPTSSYEEALKYFLEAEKQHPLF--Y---SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC--FEI 233 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~ 233 (323)
...-|+..-...++.|+++|..-+++...- . ..++-+||..|+-+|+|++|+.+-+.-+.+....-+... ...
T Consensus 159 e~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~ 238 (639)
T KOG1130|consen 159 EKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAH 238 (639)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 000000000011255556665555542110 0 134555666666666666666665554444221110000 011
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC-----CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-----PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~-----p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
++++... .-.|+++.|+++|++++.+- ....+..++.||..|.-..+++.|+.|+.+-+.|.
T Consensus 239 sNlgN~h----------iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 239 SNLGNCH----------IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred cccchhh----------hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 01355666666666554431 11113445666666666666666666665555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-10 Score=90.04 Aligned_cols=121 Identities=14% Similarity=0.194 Sum_probs=97.8
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
.+|..+.+++.+|..+...|++. +|+.+|++++++.|+. +.+++.+|.++...|++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~----------- 88 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYA----------EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH----------- 88 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH-----------
Confidence 34566667888899998889888 8889999999887764 46888999998888765
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
++|+.+|.+++++.|++ ..++..+|.+|..+|+...+...++.++.
T Consensus 89 ---------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~a~~~~~~A~~------------------------ 134 (172)
T PRK02603 89 ---------DKALEYYHQALELNPKQ-PSALNNIAVIYHKRGEKAEEAGDQDEAEA------------------------ 134 (172)
T ss_pred ---------HHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHhHhhCHHHHHH------------------------
Confidence 99999999999999997 68899999999999998777666555432
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
.+++|+..+++++..+|++
T Consensus 135 ----------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 135 ----------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ----------HHHHHHHHHHHHHhhCchh
Confidence 3567888888888888875
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-10 Score=93.38 Aligned_cols=126 Identities=13% Similarity=0.049 Sum_probs=113.4
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
.+.-+.-++.-+..+|++++.|..+|.+|...|++. .|...|.+|+++.|++++.+-.+|.+++...+-
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~----------~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~- 206 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRAS----------DALLAYRNALRLAGDNPEILLGLAEALYYQAGQ- 206 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchh----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-
Confidence 566777888899999999999999999999999999 788889999999999999999999988766532
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
..-.++...|++++++||++ ..+.+.||..+...|+|.+|+..++..++..|.+...
T Consensus 207 ----------------~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 207 ----------------QMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred ----------------cccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 22389999999999999998 6999999999999999999999999999998887654
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=103.36 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=131.8
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.+..+|-++++++|.-+.++-.||.+|...-+. ..|.++|.+|.++||++ ..+.-.++.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm--------------------~RA~kCf~KAFeLDatd-aeaaaa~ad 534 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDM--------------------KRAKKCFDKAFELDATD-AEAAAASAD 534 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHhcCCchh-hhhHHHHHH
Confidence 677889999999999999999999988765554 88999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
+|.+..+++.|....-++-+.+|.-. ....|..+++. ....+++..|+..|+.++..+|.+ ...|..
T Consensus 535 tyae~~~we~a~~I~l~~~qka~a~~-------~k~nW~~rG~y-----yLea~n~h~aV~~fQsALR~dPkD-~n~W~g 601 (1238)
T KOG1127|consen 535 TYAEESTWEEAFEICLRAAQKAPAFA-------CKENWVQRGPY-----YLEAHNLHGAVCEFQSALRTDPKD-YNLWLG 601 (1238)
T ss_pred HhhccccHHHHHHHHHHHhhhchHHH-------HHhhhhhcccc-----ccCccchhhHHHHHHHHhcCCchh-HHHHHH
Confidence 99999999999999766666554422 12223332211 234688999999999999999999 699999
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 281 LGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 281 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
||.+|...|++..|.+.|.+|..++|.+...
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 9999999999999999999999999996553
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=91.65 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
+-+.-+.-.+..+..+|++ ...|..||.+|+..|++..|...|.+|.++.|++.+... .++.+++...
T Consensus 137 ~~~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~-----------g~aeaL~~~a 204 (287)
T COG4235 137 EMEALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILL-----------GLAEALYYQA 204 (287)
T ss_pred cHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHHhc
Confidence 3477788888999999998 799999999999999999999999999999999876422 3344444444
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CChhHHHHHHHHHHh
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAVQEATKLLEKAKS 319 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~~~~~l~~~~~ 319 (323)
+...-.++...|.+++.++|++ ..+.+.||..+...|++.+|...|++.++. +|+..-...+++...
T Consensus 205 ~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 205 GQQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred CCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 4555678999999999999999 899999999999999999999999999998 555555566665543
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=100.57 Aligned_cols=121 Identities=15% Similarity=0.049 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
++|+++.++|+.+++++|-. ..+|+.+|-|..+.+++..|.++|...+.++|++..... .+ +.++..
T Consensus 499 ~~fs~~~~hle~sl~~nplq-~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWn-Nl----------s~ayi~- 565 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQ-LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWN-NL----------STAYIR- 565 (777)
T ss_pred hhHHHHHHHHHHHhhcCccc-hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhh-hh----------hHHHHH-
Confidence 45699999999999999987 688999999999999999999999999999998865432 11 111111
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++-.+|...+++|++.+-+. +..|.+--.+....|.++.|+..|.+.+.++.+
T Consensus 566 --~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 566 --LKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred --HhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 355678888888888888665 677888888888999999999999988887555
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.2e-09 Score=91.09 Aligned_cols=107 Identities=15% Similarity=0.068 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|....+.|-.+..++..+++. .|...+...++..|+|+..+...|.++...+..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d----------~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~---------------- 356 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYD----------EALKLLQPLIAAQPDNPYYLELAGDILLEANKA---------------- 356 (484)
T ss_pred ccchHHHHHHHHHHHHhcccc----------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------------
Confidence 444555555555555555555 444455555555555555555555555554433
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
.+|++.+++++.++|+. ....+++|.+|...|++.+|+..++..+.-+|.++.
T Consensus 357 ----~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 357 ----KEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred ----HHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 55555555555555554 355555555555555555555555555555555543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-09 Score=96.01 Aligned_cols=202 Identities=8% Similarity=-0.066 Sum_probs=141.6
Q ss_pred hccCCCCcH---HHH----HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHH---ccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 85 ALPQHEDHY---AIH----KWLAVILNEKATLEGTKARIQQLETIKHHMNKAI---ELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 85 al~~~p~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al---~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
+...-|.+. ++| +..|......+..+ ....|..+|.+|+ +++|+.+.++-.++.+++...-.+
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~-------~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g 312 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPE-------SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHG 312 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHH-------HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhc
Confidence 455557766 554 44454444444333 2337888999999 999999999999999998765444
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
|.. .-. .-.+|.++-++|++++|++ +.++..+|.++...++++.|+..|++|+.++|+.....+
T Consensus 313 ~~~-~~~----------~~~~a~~~A~rAveld~~D-a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~---- 376 (458)
T PRK11906 313 KSE-LEL----------AAQKALELLDYVSDITTVD-GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYY---- 376 (458)
T ss_pred CCC-chH----------HHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHH----
Confidence 433 111 2289999999999999998 799999999999999999999999999999999876533
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHH
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLL 314 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l 314 (323)
.......+ .|+.++|++.+.+++.++|.-.......+-.-.+--...++|+..|-+-.+...+.-.-+.+
T Consensus 377 -----~~~~~~~~-----~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (458)
T PRK11906 377 -----YRALVHFH-----NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNI 446 (458)
T ss_pred -----HHHHHHHH-----cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccccccchhhHHHH
Confidence 22222111 58899999999999999997532333333331334456788888776655554444333334
Q ss_pred HHHHh
Q psy11738 315 EKAKS 319 (323)
Q Consensus 315 ~~~~~ 319 (323)
-+.++
T Consensus 447 ~~~~~ 451 (458)
T PRK11906 447 LKLKQ 451 (458)
T ss_pred HHHHH
Confidence 44444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-08 Score=87.65 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=129.8
Q ss_pred cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 132 LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 132 l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
.+|.-..++|..+..++..+.+ ++|.+.+...+...|+| +..+-..+.++.+.|+.++|
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~--------------------d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A 359 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQY--------------------DEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEA 359 (484)
T ss_pred hCccchHHHHHHHHHHHHhccc--------------------chHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHH
Confidence 3488899999999999998766 99999999999999998 68888899999999999999
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
.+.+++++.++|.... .....+.+++. .|++.+|+..+.+.+.-+|++ +..|..||.+|..+|+.
T Consensus 360 ~e~~~kal~l~P~~~~-----------l~~~~a~all~---~g~~~eai~~L~~~~~~~p~d-p~~w~~LAqay~~~g~~ 424 (484)
T COG4783 360 IERLKKALALDPNSPL-----------LQLNLAQALLK---GGKPQEAIRILNRYLFNDPED-PNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHHHhcCCCccH-----------HHHHHHHHHHh---cCChHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHhCch
Confidence 9999999999998732 12223444443 688999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHhhCCCCh-hHHHHHHHHHHhhh
Q psy11738 292 EQAAYYLEMTKNYPAV-QEATKLLEKAKSYL 321 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~-~~~~~~l~~~~~~~ 321 (323)
.+|...+.+.+.+.-. .++.+.+..+++..
T Consensus 425 ~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 425 AEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999988888877444 55567777776654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.7e-08 Score=97.28 Aligned_cols=268 Identities=11% Similarity=0.056 Sum_probs=129.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCc----------------------H
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLS----------------------D 68 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~----------------------~ 68 (323)
...+-.....+...|++++|..++..+ ....+...+..+..+|...|+...... .
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344445566677889999999999887 244567788888899988886432100 0
Q ss_pred HHHHHHHHHHHHHHHhhcc--CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc----cCCCChhHHHH
Q psy11738 69 ADKKQLILSAYFLVYNALP--QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE----LKPDDSTTLFM 142 (323)
Q Consensus 69 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~----l~p~~~~~~~~ 142 (323)
--+.+++++|+..|+...+ +.|+ ...+..+...|...|+++ +|.+.|.+... +.|+ ...+..
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~d----------eA~~lf~eM~~~~~gi~PD-~vTyna 584 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVD----------RAFDVLAEMKAETHPIDPD-HITVGA 584 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence 0122334444444444322 2232 223333334444444433 45555555543 2333 234444
Q ss_pred HhhHHHHhcCCcHHHHHHHHHhhcC---------------CCCCCHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHc
Q psy11738 143 LGMWCFEITDMPWYQRKIANAIFDT---------------LPTSSYEEALKYFLEAEKQ--HPLFYSQNVLMLGKTYMRL 205 (323)
Q Consensus 143 lg~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~y~~~ 205 (323)
+...|...|++....+.+....... ...|++++|++.|.+..+. .|+ ..++..+...|.+.
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD--~~TynsLI~a~~k~ 662 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD--EVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhC
Confidence 4445555544422211111111100 0223444444444444433 233 13344444444444
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh--hCCcchhhhhHHHHH
Q psy11738 206 ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK--QHPLFYSQNVLMLGK 283 (323)
Q Consensus 206 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~--~~p~~~~~~~~~lg~ 283 (323)
|++++|.+.++...+.........+ ..+..++ ...|++++|+..|.+... ..|+ ...|..|..
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~ty----------nsLI~ay---~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~ 727 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSY----------SSLMGAC---SNAKNWKKALELYEDIKSIKLRPT--VSTMNALIT 727 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH----------HHHHHHH---HhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Confidence 4444444444444432211100000 0111111 125677777777776644 3554 356777777
Q ss_pred HHHHhcCHHHHHHHHHHhhC--CCChhHH
Q psy11738 284 TYMRLENYEQAAYYLEMTKN--YPAVQEA 310 (323)
Q Consensus 284 ~y~~~g~~~~A~~~~~~al~--~~~~~~~ 310 (323)
.|.+.|+.++|.+.|.+... +.|+...
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 77777777777777776543 3455443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-08 Score=99.33 Aligned_cols=248 Identities=12% Similarity=-0.016 Sum_probs=122.9
Q ss_pred hhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc--CCCCcHHHHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP--QHEDHYAIHK 97 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 97 (323)
..+.+.+.|++++|..+++.... .++..|..+...|...|+. ++|+..|+...+ ..|+ ...+.
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~~g~~-------------~eA~~lf~~M~~~g~~pd-~~t~~ 329 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALHGYS-------------EEALCLYYEMRDSGVSID-QFTFS 329 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCH-------------HHHHHHHHHHHHcCCCCC-HHHHH
Confidence 45666667777777777777543 3555666677777666643 334444444332 2232 22333
Q ss_pred HHHHHHHHhhcccchHH-------------------------HHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 98 WLAVILNEKATLEGTKA-------------------------RIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
.+...+...|+++.+.+ +.+...+|.+.|++..+ .|...|..+...|...|+
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCC
Confidence 34444444444431110 00111145555554432 234455555555555554
Q ss_pred CcHHHHHHHHHhh---------------cCCCCCCHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 153 MPWYQRKIANAIF---------------DTLPTSSYEEALKYFLEAEKQ---HPLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 153 ~~~~~~~~~~~~~---------------~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
.......+..... .-...|..++|.+.|+...+. .|+ ...|..+..+|.+.|++++|.+.
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhcCCHHHHHHH
Confidence 4211111111000 001234445555555555432 333 24455555666666666666665
Q ss_pred HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHH
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A 294 (323)
+++. ...|+.. . +..+..+.. ..|+++.|...+++.+.+.|++ ...|..|+.+|...|++++|
T Consensus 485 ~~~~-~~~p~~~---~---------~~~Ll~a~~---~~g~~~~a~~~~~~l~~~~p~~-~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 485 IRRA-PFKPTVN---M---------WAALLTACR---IHKNLELGRLAAEKLYGMGPEK-LNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHC-CCCCCHH---H---------HHHHHHHHH---HcCCcHHHHHHHHHHhCCCCCC-CcchHHHHHHHHhCCCHHHH
Confidence 5543 1122110 0 011111111 1467777777777777777776 56677778888888888888
Q ss_pred HHHHHHhhCC
Q psy11738 295 AYYLEMTKNY 304 (323)
Q Consensus 295 ~~~~~~al~~ 304 (323)
.+.+++..+.
T Consensus 548 ~~v~~~m~~~ 557 (697)
T PLN03081 548 AKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHc
Confidence 8777665443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-09 Score=85.08 Aligned_cols=183 Identities=14% Similarity=0.104 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.|...-|...|.+++.+.|+-|+++..+|..+...|+++ .|.+.|+..+++||.+.-++.+.|..++..|
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fd----------aa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g 147 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD----------AAYEAFDSVLELDPTYNYAHLNRGIALYYGG 147 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccch----------HHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence 456677999999999999999999999999999999999 6778899999999999999999998887765
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-HHcCCHHHHHHH-HHHHhCCCCCCchhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY-MRLENYEQAAYY-LEMTKNYPVKQDKDQ 229 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y-~~~g~~~~A~~~-~~~al~~~~~~~~~~ 229 (323)
+|.-|.+.|.+-.+.||+++ +..|...+ ...-++.+|... .+++...+.......
T Consensus 148 --------------------R~~LAq~d~~~fYQ~D~~DP---fR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~ 204 (297)
T COG4785 148 --------------------RYKLAQDDLLAFYQDDPNDP---FRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWN 204 (297)
T ss_pred --------------------chHhhHHHHHHHHhcCCCCh---HHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHH
Confidence 45999999999999999974 22222222 233456666554 555555543332211
Q ss_pred hhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc------chhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL------FYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 230 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
. ..-+++..+. + ..++++.....+ ....+++.||+-|...|+.++|...|+-|+.
T Consensus 205 i-------------V~~yLgkiS~----e--~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 205 I-------------VEFYLGKISE----E--TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred H-------------HHHHHhhccH----H--HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1 0111121111 1 111222211111 1135799999999999999999999998876
Q ss_pred CCC
Q psy11738 304 YPA 306 (323)
Q Consensus 304 ~~~ 306 (323)
-+-
T Consensus 266 nnV 268 (297)
T COG4785 266 NNV 268 (297)
T ss_pred HhH
Confidence 543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-09 Score=84.67 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=81.6
Q ss_pred HHHHHHHHhhccCCCCc--HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHh
Q psy11738 76 LSAYFLVYNALPQHEDH--YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEI 150 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~ 150 (323)
..+...+...++.++.. ..+++.+|.++...|+++ +|...|.+++.+.|+. +.++.++|.++...
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~----------~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYA----------EALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 33455555555566555 556688899999899988 8999999999998764 45899999999998
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCC
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 207 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~ 207 (323)
|++ ++|+..|+++++++|.. ..++.++|.+|...|+
T Consensus 86 g~~--------------------~eA~~~~~~Al~~~~~~-~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 86 GEH--------------------TKALEYYFQALERNPFL-PQALNNMAVICHYRGE 121 (168)
T ss_pred CCH--------------------HHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHhhH
Confidence 765 99999999999999997 6889999999995554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=76.88 Aligned_cols=99 Identities=22% Similarity=0.286 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHH
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE 174 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+++.+|.++...|++. +|...+.++++..|.++.++..+|.++...+++ +
T Consensus 2 ~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 51 (100)
T cd00189 2 ALLNLGNLYYKLGDYD----------EALEYYEKALELDPDNADAYYNLAAAYYKLGKY--------------------E 51 (100)
T ss_pred HHHHHHHHHHHHhcHH----------HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH--------------------H
Confidence 4677888888888888 899999999999999999999999999988766 9
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
+|+.+|++++...|.+ ..++..+|.++...|++++|..++++++..+|.
T Consensus 52 ~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 52 EALEDYEKALELDPDN-AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHhCCCcc-hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999997 588999999999999999999999999988763
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=81.52 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
++.++.+|..+...|++. +|.+.|.+++..+|++ +.+++.+|.+++..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------- 55 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYA----------DAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY---------------- 55 (119)
T ss_pred cHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH----------------
Confidence 356788899999999998 8999999999999987 56899999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|++++..+|++. +.+++.+|.++..+|++++|+.++++++...|.+..
T Consensus 56 ----~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 56 ----ADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred ----HHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999999999988852 467999999999999999999999999999988753
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=82.64 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH
Q psy11738 70 DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~ 149 (323)
+|.-.|+.|.+.++..+..+|.+++++++-|.++..+.++....++...+.+|+.-|+.||.++|+...+++.+|.++..
T Consensus 2 ~rl~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 2 ERLLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 35567899999999999999999999999999999999998877888889999999999999999999999999999998
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
.+.+..-.... .. -|++|..+|++|...+|++
T Consensus 82 ~A~l~~d~~~A-~~--------~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 82 LAFLTPDTAEA-EE--------YFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHH---HHHH-HH--------HHHHHHHHHHHHHHH-TT-
T ss_pred HHhhcCChHHH-HH--------HHHHHHHHHHHHHhcCCCc
Confidence 87431111111 11 2599999999999999997
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-08 Score=98.21 Aligned_cols=175 Identities=10% Similarity=-0.089 Sum_probs=121.4
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 93 (323)
+......+...|....+..+...+ ....+..++..+...|...|+ +++|...|+... +.+.
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~-------------~~~A~~vf~~m~---~~~~ 290 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD-------------IEDARCVFDGMP---EKTT 290 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC-------------HHHHHHHHHhCC---CCCh
Confidence 333444555678888877665443 334466677788899988884 466899998754 4567
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC-----
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT----- 167 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~----- 167 (323)
..|..+...|...|+.+ +|.+.|.+..+.. .-+..++..+...|...|.+..............
T Consensus 291 vt~n~li~~y~~~g~~~----------eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 291 VAWNSMLAGYALHGYSE----------EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred hHHHHHHHHHHhCCCHH----------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 78888999999999998 8888888886643 2245677777778888777644333332222211
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 168 ----------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 168 ----------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
...|+.++|.+.|++..+ |+ ..+|..+...|.+.|+.++|++.|++....
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d--~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR--KN--LISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC--CC--eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 135678888888887653 44 367888888888888888888888887654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-09 Score=79.97 Aligned_cols=91 Identities=21% Similarity=0.165 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 174 EEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
++|+..|.++++.+|++. +.+++.+|.++...|++++|+.+|++++..+|++.
T Consensus 19 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------------------------- 73 (119)
T TIGR02795 19 ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP------------------------- 73 (119)
T ss_pred HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-------------------------
Confidence 666666666666666531 24566666666666666666666666655544321
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
.. +.+++.+|.++..+|++++|..++.++++..|++..
T Consensus 74 --------------------~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 74 --------------------KA-PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred --------------------cc-cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 11 356788888888888888888888888888777553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-08 Score=84.52 Aligned_cols=177 Identities=11% Similarity=0.004 Sum_probs=137.4
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHH---HHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTL---FMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~---~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
..+..++..|..+...|++. +|++.|++++...|..+.+. +.+|.+++..+++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~----------~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y-------------- 85 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWK----------QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-------------- 85 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH--------------
Confidence 35667788899998889998 89999999999999987765 8899999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHhCCCCCCch
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLE---------------N---YEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g---------------~---~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|++.++.+|+++ +.+++.+|.++...+ | ..+|+..|++.+...|++.-
T Consensus 86 ------~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 86 ------PLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred ------HHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 999999999999999873 367899998875554 1 34788999999999998853
Q ss_pred hhhh------hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch--hhhhHHHHHHHHHhcCHHHHHHHHH
Q psy11738 228 DQCF------EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLE 299 (323)
Q Consensus 228 ~~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~ 299 (323)
.... ....++-....++.-++. .|.|.-|+.-++.+++-.|+.. ..+++.++.+|..+|..++|..+..
T Consensus 160 a~~A~~rl~~l~~~la~~e~~ia~~Y~~---~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 160 TTDATKRLVFLKDRLAKYELSVAEYYTK---RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 2221 111222233334444444 6889999999999999988641 3678899999999999999988765
Q ss_pred H
Q psy11738 300 M 300 (323)
Q Consensus 300 ~ 300 (323)
.
T Consensus 237 ~ 237 (243)
T PRK10866 237 I 237 (243)
T ss_pred H
Confidence 4
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-10 Score=76.25 Aligned_cols=68 Identities=28% Similarity=0.399 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc-CCcHHHHHHHHHhhcCCC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT-DMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~-~~~~~~~~~~~~~~~~~~ 169 (323)
+++..+..+|.++...+++. +|+.+|.++++++|+++.+++++|.++..+| ++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~----------~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~---------------- 54 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYE----------EAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDY---------------- 54 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHH----------HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------------
T ss_pred CHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------------
Confidence 36788999999999999999 9999999999999999999999999999987 45
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q psy11738 170 TSSYEEALKYFLEAEKQHP 188 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p 188 (323)
.+|+.+|+++++++|
T Consensus 55 ----~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 55 ----EEAIEDFEKALKLDP 69 (69)
T ss_dssp ----HHHHHHHHHHHHHST
T ss_pred ----HHHHHHHHHHHHcCc
Confidence 999999999999998
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=86.29 Aligned_cols=138 Identities=17% Similarity=0.110 Sum_probs=103.9
Q ss_pred hhHHHhhccHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC---cH
Q psy11738 21 SDDLFEEQQFEEVNKMLESS--E--YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED---HY 93 (323)
Q Consensus 21 a~~~~~~~~~~~A~~~~~~~--~--~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~ 93 (323)
.+.+|-.+.|..+...+... . ....+..++.+|.++...|+ +++|+..+++++.+.|+ .+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~-------------~~~A~~~~~~al~l~~~~~~~~ 72 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE-------------YAEALQNYYEAMRLEIDPYDRS 72 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhccccchhhH
Confidence 44556666677766666554 2 33346777888888887774 56799999999988776 34
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC----cHHHHHHHHHhhcCCC
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM----PWYQRKIANAIFDTLP 169 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~----~~~~~~~~~~~~~~~~ 169 (323)
.++..+|.++...|++. +|+..+++++.++|.+...+..+|.++...+.. +.......
T Consensus 73 ~~~~~lg~~~~~~g~~~----------eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~-------- 134 (168)
T CHL00033 73 YILYNIGLIHTSNGEHT----------KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA-------- 134 (168)
T ss_pred HHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHH--------
Confidence 58999999999999999 899999999999999999999999999865522 11121211
Q ss_pred CCCHHHHHHHHHHHHhcCCCch
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFY 191 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~ 191 (323)
.+++|+.+|++++..+|++.
T Consensus 135 --~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 135 --WFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred --HHHHHHHHHHHHHHhCcccH
Confidence 23788899999999999763
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.7e-08 Score=87.77 Aligned_cols=234 Identities=12% Similarity=-0.004 Sum_probs=144.2
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
...+.++...+.....|+|++|.....++ ..|++..++..-.-+... .+.|++|+...++-....
T Consensus 10 ~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-------------~~ky~~ALk~ikk~~~~~ 76 (652)
T KOG2376|consen 10 DNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-------------LDKYEDALKLIKKNGALL 76 (652)
T ss_pred ccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-------------hhHHHHHHHHHHhcchhh
Confidence 34488999999999999999999999887 478888876544444433 336788885555433322
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
-.+.- .+..+.|.+.++..+ +|...++ -+++.+..+.+..|.++|+.+++
T Consensus 77 ~~~~~-~fEKAYc~Yrlnk~D----------ealk~~~---~~~~~~~~ll~L~AQvlYrl~~y---------------- 126 (652)
T KOG2376|consen 77 VINSF-FFEKAYCEYRLNKLD----------EALKTLK---GLDRLDDKLLELRAQVLYRLERY---------------- 126 (652)
T ss_pred hcchh-hHHHHHHHHHcccHH----------HHHHHHh---cccccchHHHHHHHHHHHHHhhH----------------
Confidence 22222 257888999999888 7777766 67788888899999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHH-HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY-LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~-~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|+..|+..++-+.++ .+........-.. .+... ..+.+...|.+.-. .+-+.++. +.
T Consensus 127 ----dealdiY~~L~kn~~dd-~d~~~r~nl~a~~-----a~l~~~~~q~v~~v~e~sye---l~yN~Ac~-------~i 186 (652)
T KOG2376|consen 127 ----DEALDIYQHLAKNNSDD-QDEERRANLLAVA-----AALQVQLLQSVPEVPEDSYE---LLYNTACI-------LI 186 (652)
T ss_pred ----HHHHHHHHHHHhcCCch-HHHHHHHHHHHHH-----HhhhHHHHHhccCCCcchHH---HHHHHHHH-------HH
Confidence 77777777776654443 2222111111000 00000 22222222221111 11111111 11
Q ss_pred ccCCCCcHHHHHHHHHHHHhhC--------Cc------chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQH--------PL------FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~--------p~------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
..|+|.+|++.+.+|..+. .+ ....+...|+.++-.+|+.++|...|...+..+|-++..
T Consensus 187 ---~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 187 ---ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred ---hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 2466677777666663221 00 002357789999999999999999999999998776643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-07 Score=78.48 Aligned_cols=259 Identities=15% Similarity=0.086 Sum_probs=171.7
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC-cH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS-EYKED-VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED-HY 93 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~ 93 (323)
...+|-.-+..|+|.+|..++.+. ++.+. .-.+..-+++-..+|+ ++.+-.+..++-+..++ +.
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd-------------~~~an~yL~eaae~~~~~~l 153 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGD-------------EDRANRYLAEAAELAGDDTL 153 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhccc-------------HHHHHHHHHHHhccCCCchH
Confidence 344555556679999999999886 44444 4445555677777775 45689999999999443 33
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC-C---
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL-P--- 169 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~--- 169 (323)
.+....+.++...+++. .|..-.+++++..|.++......-++|+..|++......+........ .
T Consensus 154 ~v~ltrarlll~~~d~~----------aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 154 AVELTRARLLLNRRDYP----------AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred HHHHHHHHHHHhCCCch----------hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 45566677788888887 677789999999999999999999999999988655444433222110 0
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 170 -----------------TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 170 -----------------~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
...-.+++..+-+-+...-.+.+..-..++.-+.+.|+.++|.+..+.+++..-+.. .
T Consensus 224 ~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L--- 298 (400)
T COG3071 224 AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--L--- 298 (400)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--H---
Confidence 000011111122211111111123455567778999999999999999988632221 0
Q ss_pred hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHH
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATK 312 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 312 (323)
..+++....++...=+...++.+...|+. +..+..||..|.+.+.+.+|..+|+.|+...|..+.-.
T Consensus 299 ------------~~~~~~l~~~d~~~l~k~~e~~l~~h~~~-p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~ 365 (400)
T COG3071 299 ------------CRLIPRLRPGDPEPLIKAAEKWLKQHPED-PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYA 365 (400)
T ss_pred ------------HHHHhhcCCCCchHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHH
Confidence 11223344566777777777888888887 68888888888888888888888888888877755544
Q ss_pred HHHH
Q psy11738 313 LLEK 316 (323)
Q Consensus 313 ~l~~ 316 (323)
.+-+
T Consensus 366 ~la~ 369 (400)
T COG3071 366 ELAD 369 (400)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-11 Score=103.18 Aligned_cols=245 Identities=16% Similarity=0.174 Sum_probs=154.9
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC-
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS----EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED- 91 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 91 (323)
+-+.|+.++-.++|++|+..-..= +.-.+ ...-|...-++|+... -+|.|++|+.++.+-+.+...
T Consensus 58 YsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd---klGEAKssgNLGNtlK------v~G~fdeA~~cc~rhLd~areL 128 (639)
T KOG1130|consen 58 YSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD---KLGEAKSSGNLGNTLK------VKGAFDEALTCCFRHLDFAREL 128 (639)
T ss_pred HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc---hhccccccccccchhh------hhcccchHHHHHHHHhHHHHHH
Confidence 466788888899999998643220 10000 0011222333343332 266788899988887766433
Q ss_pred -----cHHHHHHHHHHHHHhhcccchHH----------HHHhHHHHHHHHHHHHccCCCC------hhHHHHHhhHHHHh
Q psy11738 92 -----HYAIHKWLAVILNEKATLEGTKA----------RIQQLETIKHHMNKAIELKPDD------STTLFMLGMWCFEI 150 (323)
Q Consensus 92 -----~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~al~l~p~~------~~~~~~lg~~~~~~ 150 (323)
.+.++|++|.+|-..|+-.+... .......|.++|..-+++...- ..++-+||..||-+
T Consensus 129 gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL 208 (639)
T KOG1130|consen 129 GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL 208 (639)
T ss_pred hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee
Confidence 35578999999988887543211 1233445566666666665432 22344455555544
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
| +|+.||.+-+.-+++...+ .-.++.+||.|+.-+|+++.|+++|++++.+.-.-
T Consensus 209 G--------------------df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel 268 (639)
T KOG1130|consen 209 G--------------------DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL 268 (639)
T ss_pred c--------------------cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence 4 4588988888777763332 12578999999999999999999999987653211
Q ss_pred ----chhh-hhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc------chhhhhHHHHHHHHHhcCHHHH
Q psy11738 226 ----DKDQ-CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL------FYSQNVLMLGKTYMRLENYEQA 294 (323)
Q Consensus 226 ----~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~------~~~~~~~~lg~~y~~~g~~~~A 294 (323)
.++. ++++++. +.+ ...+++||+++.+-+.+-.. . .+++..||.+|..+|..++|
T Consensus 269 g~r~vEAQscYSLgNt--------ytl-----l~e~~kAI~Yh~rHLaIAqeL~DriGe-~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 269 GNRTVEAQSCYSLGNT--------YTL-----LKEVQKAITYHQRHLAIAQELEDRIGE-LRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred cchhHHHHHHHHhhhH--------HHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhhhhHHHH
Confidence 1111 1233222 112 24689999999987765332 2 36789999999999999999
Q ss_pred HHHHHHhhCC
Q psy11738 295 AYYLEMTKNY 304 (323)
Q Consensus 295 ~~~~~~al~~ 304 (323)
+.+.++.+++
T Consensus 335 l~fae~hl~~ 344 (639)
T KOG1130|consen 335 LYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHH
Confidence 9888777655
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.8e-09 Score=80.72 Aligned_cols=123 Identities=13% Similarity=0.117 Sum_probs=95.1
Q ss_pred HHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc
Q psy11738 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 205 (323)
Q Consensus 126 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~ 205 (323)
+..+..+.++..+..|..|.-++..|++ ++|...|+-....+|.+ +..++.||.|+-.+
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~--------------------~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~ 84 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRL--------------------DEAETFFRFLCIYDFYN-PDYTMGLAAVCQLK 84 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHH
Confidence 4445666777778888888888887655 99999999999999998 68889999998888
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHH
Q psy11738 206 ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 285 (323)
Q Consensus 206 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y 285 (323)
++|++|+..|-.+..+ ++++ +...+..|.||
T Consensus 85 k~y~~Ai~~Y~~A~~l------------------------------------------------~~~d-p~p~f~agqC~ 115 (165)
T PRK15331 85 KQFQKACDLYAVAFTL------------------------------------------------LKND-YRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHHc------------------------------------------------ccCC-CCccchHHHHH
Confidence 8888888877666554 3444 45578899999
Q ss_pred HHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 286 MRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 286 ~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
+.+|+.+.|+.+|..+++.+. ...+..+++.+|
T Consensus 116 l~l~~~~~A~~~f~~a~~~~~---~~~l~~~A~~~L 148 (165)
T PRK15331 116 LLMRKAAKARQCFELVNERTE---DESLRAKALVYL 148 (165)
T ss_pred HHhCCHHHHHHHHHHHHhCcc---hHHHHHHHHHHH
Confidence 999999999999999998543 334555555554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.6e-09 Score=81.09 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=86.5
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhh
Q psy11738 30 FEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKA 107 (323)
Q Consensus 30 ~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 107 (323)
|+.|.+.++.. .+|.+++.+.++|.++..+.+..+ ..+.+..+++|+.-++.|+.++|+..++++.+|.+|..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~---g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQ---GPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccC---cchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 45565555553 699999999999999999998866 4456679999999999999999999999999999999999
Q ss_pred cccchH-HHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 108 TLEGTK-ARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 108 ~~~~~~-~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
.+.... +....+.+|.++|++|...+|+|...+..|...
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 876544 334567889999999999999997766665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=76.20 Aligned_cols=81 Identities=26% Similarity=0.399 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 171 SSYEEALKYFLEAEKQHPLF-YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
++|+.|+..|+++++.+|++ ....++.+|.||.++|++++|+.++++ .+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~---------------------------- 53 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL---------------------------- 53 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH----------------------------
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC----------------------------
Confidence 67899999999999999953 246678899999999999999988876 332
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
+|.. ....+.+|.|+..+|++++|+.+|+++
T Consensus 54 --------------------~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 54 --------------------DPSN-PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp --------------------HHCH-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred --------------------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 2223 455667799999999999999999875
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.8e-08 Score=82.29 Aligned_cols=187 Identities=11% Similarity=0.072 Sum_probs=130.0
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHH---HHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEII---WRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~---~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.++...+..|..++..|+|++|+..++.+ ..|....+. +.+|.+|+..++ +++|+..+++.+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~-------------y~~A~~~~e~fi 96 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-------------LPLAQAAIDRFI 96 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-------------HHHHHHHHHHHH
Confidence 46777899999999999999999999997 477765544 889999998885 466999999999
Q ss_pred cCCCCcHH---HHHHHHHHHHHhhc-----cc---chHHHHHhHHHHHHHHHHHHccCCCChhH---HHHHhhHHHHhcC
Q psy11738 87 PQHEDHYA---IHKWLAVILNEKAT-----LE---GTKARIQQLETIKHHMNKAIELKPDDSTT---LFMLGMWCFEITD 152 (323)
Q Consensus 87 ~~~p~~~~---~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~a~~~~~~al~l~p~~~~~---~~~lg~~~~~~~~ 152 (323)
+.+|+++. +++.+|.+...++. +. ....-.....+|+..|++.++.-|+..-+ ...+..+...+..
T Consensus 97 ~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 97 RLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 99988766 55667766544431 10 01111223447888999999999987543 2222222222211
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
... .++...+. .|.|.-|+.-|+.+++.-|+. ...++..++..|..+|..++|..+...
T Consensus 177 ~e~---~ia~~Y~~---~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 177 YEL---SVAEYYTK---RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHH---HHHHHHHH---cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 110 11111111 256799999999999988774 237899999999999999999887654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-10 Score=77.42 Aligned_cols=78 Identities=27% Similarity=0.379 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHccCCC--ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHH
Q psy11738 119 LETIKHHMNKAIELKPD--DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 196 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 196 (323)
...|+..++++++.+|. +...++.+|.+++..|++ ++|+..+++ .+.+|.+ ...++
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y--------------------~~A~~~~~~-~~~~~~~-~~~~~ 62 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY--------------------EEAIELLQK-LKLDPSN-PDIHY 62 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH--------------------HHHHHHHHC-HTHHHCH-HHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH--------------------HHHHHHHHH-hCCCCCC-HHHHH
Confidence 34899999999999996 466788899999998765 999999999 8888886 58888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q psy11738 197 MLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 197 ~lg~~y~~~g~~~~A~~~~~~a 218 (323)
.+|.|+..+|++++|+++|+++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 8999999999999999999875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.9e-09 Score=72.77 Aligned_cols=99 Identities=24% Similarity=0.274 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHH
Q psy11738 48 IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMN 127 (323)
Q Consensus 48 ~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 127 (323)
+++.+|.++...| ++++|+..++++++..|.++.++..+|.++...+++. +|.+++.
T Consensus 2 ~~~~~a~~~~~~~-------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~a~~~~~ 58 (100)
T cd00189 2 ALLNLGNLYYKLG-------------DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYE----------EALEDYE 58 (100)
T ss_pred HHHHHHHHHHHHh-------------cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 4566777777766 4577999999999999999999999999999999888 8999999
Q ss_pred HHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC
Q psy11738 128 KAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 189 (323)
Q Consensus 128 ~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 189 (323)
+++...|.+...+..+|.++...+++ ++|..++.++++.+|+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 59 KALELDPDNAKAYYNLGLAYYKLGKY--------------------EEALEAYEKALELDPN 100 (100)
T ss_pred HHHhCCCcchhHHHHHHHHHHHHHhH--------------------HHHHHHHHHHHccCCC
Confidence 99999999999999999999988765 9999999999998874
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.8e-08 Score=78.68 Aligned_cols=182 Identities=13% Similarity=0.086 Sum_probs=122.3
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--C---CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--E---YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~---~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.+.+.++..|..++..|+|.+|+..++.+ . .|--.++.+.+|.+++..|+ +..|+..+++.+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~-------------y~~A~~~~~~fi 69 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD-------------YEEAIAAYERFI 69 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--------------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHH
Confidence 46678999999999999999999999987 2 34458889999999999884 566999999999
Q ss_pred cCCCCcHH---HHHHHHHHHHHhhccc-chHHHHHhHHHHHHHHHHHHccCCCChhHHHH---HhhHHHHhcCCcHHHHH
Q psy11738 87 PQHEDHYA---IHKWLAVILNEKATLE-GTKARIQQLETIKHHMNKAIELKPDDSTTLFM---LGMWCFEITDMPWYQRK 159 (323)
Q Consensus 87 ~~~p~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~---lg~~~~~~~~~~~~~~~ 159 (323)
+..|+++. +++++|.++.....-. ..........+|+..|+..++.-|+++.+... +..+-..+... .-.
T Consensus 70 ~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~---e~~ 146 (203)
T PF13525_consen 70 KLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH---ELY 146 (203)
T ss_dssp HH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH---HHH
Confidence 99988665 7788888776654221 00122345558889999999999998654322 22221111110 001
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHH
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~ 212 (323)
++...+ ..+.|..|+.-|+.+++.-|+.. ..++..++.+|..+|..+.|.
T Consensus 147 ia~~Y~---~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYY---KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHH---CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHH---HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 111122 23677999999999999988852 257899999999999998543
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-07 Score=79.20 Aligned_cols=179 Identities=12% Similarity=0.024 Sum_probs=123.1
Q ss_pred hhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHK 97 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 97 (323)
..-.++...+|.+||+++..- +.|.+-..+-.+|.||+... .|..|-.+|++.-.+.|.......
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q-------------~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQ-------------EFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhChHHHHHHH
Confidence 345678899999999999876 58888888999999999866 567799999999999999999888
Q ss_pred HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh--------hcC--
Q psy11738 98 WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI--------FDT-- 167 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~--------~~~-- 167 (323)
..+..++..+.+.++ .+.......-+.-.......-+-+.++.+++...+.-+.+.- ...
T Consensus 83 Y~AQSLY~A~i~ADA----------LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gC 152 (459)
T KOG4340|consen 83 YQAQSLYKACIYADA----------LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGC 152 (459)
T ss_pred HHHHHHHHhcccHHH----------HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchh
Confidence 889888888888733 222221111000000111112223333333322221111111 000
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 168 --LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 168 --~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
-..|.|+.|++-|+.|++...-+ +..-++++.|..+.|+++.|+++....+...
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 14578899999999999998876 5778899999999999999999987776553
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-08 Score=91.12 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=117.3
Q ss_pred hHHHHHHhhhHHHhh---ccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 13 VSEEFLKKSDDLFEE---QQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~---~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
.+=+++.+|..++.. +.+..|+.+++++ .+|+++.++-.++.+|.....+... .......+.....+++.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~-----~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPL-----DEKQLAALSTELDNIVA 412 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHhhh
Confidence 444568888888765 4588999999998 6999999999999888776555431 12345677777788766
Q ss_pred C--CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 88 Q--HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 88 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+ +|..+.+|..+|......|+++ +|...+++|+.++| +..+|..+|.++...|+.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~----------~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~------------ 469 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTD----------EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN------------ 469 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH------------
Confidence 4 8888888998999888888888 89999999999999 588999999999988766
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 166 DTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
++|+..|++|+.++|.+
T Consensus 470 --------~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 470 --------RLAADAYSTAFNLRPGE 486 (517)
T ss_pred --------HHHHHHHHHHHhcCCCC
Confidence 99999999999999997
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=81.97 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc---HHHHHHHHHHHHHhhcccchHHHHHh
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH---YAIHKWLAVILNEKATLEGTKARIQQ 118 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (323)
.+..+.+++.+|..|...|+ +++|+.++++++.+.|+. +.++..+|.++...|+++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~-------- 89 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGE-------------YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHD-------- 89 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHH--------
Confidence 55677788999999988775 567999999999887763 468899999999999998
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
+|+..+.+++.+.|+++.++..+|.++...|+..........+. ..+++|+++++++++++|++
T Consensus 90 --~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 90 --KALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred --HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH------HHHHHHHHHHHHHHhhCchh
Confidence 89999999999999999999999999998876522222221111 12478888888888888876
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-09 Score=72.03 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
+|++|+..|+++++.+|++ +.+++.+|.++..+|++++|+.+|+++++.+|++
T Consensus 12 ~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4499999999999999998 7999999999999999999999999999999986
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-07 Score=93.26 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--CCCChhHHHHHhhHHH
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--KPDDSTTLFMLGMWCF 148 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--~p~~~~~~~~lg~~~~ 148 (323)
+.|++++|...|+.. +.+...|..+...|...|+.. +|.+.|++..+. .|+.. ++..+-..|.
T Consensus 536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~----------~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~ 600 (857)
T PLN03077 536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGS----------MAVELFNRMVESGVNPDEV-TFISLLCACS 600 (857)
T ss_pred HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCCcc-cHHHHHHHHh
Confidence 345667777777775 346667777777787778777 788888887764 45543 3444444555
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK---QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
..|.+ ++|..+|+...+ +.|+ ...|..+..+|.+.|++++|.+.+++. .+.|+.
T Consensus 601 ~~g~v--------------------~ea~~~f~~M~~~~gi~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~ 657 (857)
T PLN03077 601 RSGMV--------------------TQGLEYFHSMEEKYSITPN--LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP 657 (857)
T ss_pred hcChH--------------------HHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH
Confidence 55544 999999999874 3666 378999999999999999999999985 344442
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.. +..+.. +.. ..++.+.+....+++++++|++ ...+..|+.+|...|++++|....+.-.+
T Consensus 658 ~~--~~aLl~----------ac~---~~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 658 AV--WGALLN----------ACR---IHRHVELGELAAQHIFELDPNS-VGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HH--HHHHHH----------HHH---HcCChHHHHHHHHHHHhhCCCC-cchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 11 111111 111 1467888888899999999998 78899999999999999999988766543
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-08 Score=91.70 Aligned_cols=205 Identities=15% Similarity=0.147 Sum_probs=139.6
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
|+.-.-....++.+++.|-...|+.++++. +.|-....||...|+.. +|..+..+-++ .|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~-------------kaeei~~q~le-k~ 454 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHG-------------KAEEINRQELE-KD 454 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccc-------------hHHHHHHHHhc-CC
Confidence 444444566788888888888888888774 23334455666666332 24444444444 23
Q ss_pred CcHHHHHHHHHHHHHhhcccchH-----------H-------HHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTK-----------A-------RIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-----------~-------~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
.++..|-.+|.+.....-++.+- . +-.++.++.++|+..++++|-....|+.+|-+..+.++
T Consensus 455 ~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 455 PDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred CcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 33444444443332221111100 0 01234488899999999999999999999999888876
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh-h
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC-F 231 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~ 231 (323)
+ +.|.++|..++.++|++ ..+|.+++-.|.++|+-.+|...+.+|++-+-.+....- +
T Consensus 535 ~--------------------q~av~aF~rcvtL~Pd~-~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENy 593 (777)
T KOG1128|consen 535 E--------------------QAAVKAFHRCVTLEPDN-AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENY 593 (777)
T ss_pred h--------------------HHHHHHHHHHhhcCCCc-hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeech
Confidence 5 99999999999999998 699999999999999999999999999998733321111 1
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
.+. ..+.|.+++|++.|.+.+.+..
T Consensus 594 mlv---------------svdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 594 MLV---------------SVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhh---------------hhhcccHHHHHHHHHHHHHhhh
Confidence 110 1246889999999998887643
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-07 Score=78.34 Aligned_cols=171 Identities=17% Similarity=0.116 Sum_probs=124.2
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
.+...+..|..+...|++. +|+..|++.+...|..+ .+.+.+|.+++..+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~----------~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y--------------- 58 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYE----------EAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY--------------- 58 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HH----------HHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H---------------
T ss_pred CHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH---------------
Confidence 4567888999999999999 89999999999988764 5789999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHhCCCCCCchhhhh----
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLEN-----------YEQAAYYLEMTKNYPVKQDKDQCF---- 231 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~---- 231 (323)
.+|+..|++.++..|++. +.+++.+|.++..+.+ ..+|+..|+..+...|++.-....
T Consensus 59 -----~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l 133 (203)
T PF13525_consen 59 -----EEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL 133 (203)
T ss_dssp -----HHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence 999999999999999862 3579999999766542 448999999999999998643221
Q ss_pred --hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch--hhhhHHHHHHHHHhcCHHHHH
Q psy11738 232 --EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAA 295 (323)
Q Consensus 232 --~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~--~~~~~~lg~~y~~~g~~~~A~ 295 (323)
....++-....+|..++. .|.|..|+..|..+++..|+.. ..++..++.+|..+|..+.|.
T Consensus 134 ~~l~~~la~~e~~ia~~Y~~---~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 134 AELRNRLAEHELYIARFYYK---RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 111222222334444443 6889999999999999988752 146788899999999988554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-06 Score=80.04 Aligned_cols=223 Identities=17% Similarity=0.105 Sum_probs=155.3
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCC-------------------C----
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSS-------------------L---- 66 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~-------------------~---- 66 (323)
+...-.-.+|..++..|++++|...+..+ ++|+|...+..+..+.......... .
T Consensus 36 Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r 115 (517)
T PF12569_consen 36 DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR 115 (517)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhH
Confidence 33444566999999999999999999997 6999999998888887333211100 0
Q ss_pred ------cHHH--------------------------------HHHHHHHHHHHHHhhccCC----------CCcHH----
Q psy11738 67 ------SDAD--------------------------------KKQLILSAYFLVYNALPQH----------EDHYA---- 94 (323)
Q Consensus 67 ------~~~~--------------------------------~~~~~~~A~~~~~~al~~~----------p~~~~---- 94 (323)
.+++ +..-+.+-+.-+...++.. +..|.
T Consensus 116 l~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw 195 (517)
T PF12569_consen 116 LPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLW 195 (517)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHH
Confidence 0010 1111122222222222211 11222
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHH
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE 174 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+++.++.+|...|++. +|.++.++||+.+|..++.+...|+++-..|++ .
T Consensus 196 ~~~~lAqhyd~~g~~~----------~Al~~Id~aI~htPt~~ely~~KarilKh~G~~--------------------~ 245 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYE----------KALEYIDKAIEHTPTLVELYMTKARILKHAGDL--------------------K 245 (517)
T ss_pred HHHHHHHHHHHhCCHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH--------------------H
Confidence 3355677787788777 899999999999999999999999999998876 9
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCC
Q psy11738 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTS 254 (323)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 254 (323)
+|..+++.|.++|+.+ -..-...+..+.+.|+.++|.+.+..-.+-+. +.... ..-..-.|+....|.+++. .|
T Consensus 246 ~Aa~~~~~Ar~LD~~D-RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~-L~~mQc~Wf~~e~a~a~~r---~~ 319 (517)
T PF12569_consen 246 EAAEAMDEARELDLAD-RYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSN-LNDMQCMWFETECAEAYLR---QG 319 (517)
T ss_pred HHHHHHHHHHhCChhh-HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccC-HHHHHHHHHHHHHHHHHHH---Hh
Confidence 9999999999999997 36666678889999999999999987655543 21111 1112334776667777665 57
Q ss_pred cHHHHHHHHHHHHhhC
Q psy11738 255 SYEEALKYFLEAEKQH 270 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~ 270 (323)
++-.|+..|..+.+..
T Consensus 320 ~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 320 DYGLALKRFHAVLKHF 335 (517)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8889998888877664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.7e-07 Score=89.45 Aligned_cols=237 Identities=11% Similarity=-0.011 Sum_probs=131.6
Q ss_pred hHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHH
Q psy11738 22 DDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKW 98 (323)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 98 (323)
..+-..|+++.|..++..+ ....+..++..+...|...|+ +++|...|++..+. +...|..
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~-------------~~~A~~vf~~m~~~---d~vs~~~ 460 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC-------------IDKALEVFHNIPEK---DVISWTS 460 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC-------------HHHHHHHHHhCCCC---CeeeHHH
Confidence 3555667777777766655 233445566666777776663 35567777665432 3334555
Q ss_pred HHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC-----------
Q psy11738 99 LAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT----------- 167 (323)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (323)
+...|...|+.. +|...|.+.+.-.+-|...+..+-..+...|++..........+...
T Consensus 461 mi~~~~~~g~~~----------eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 461 IIAGLRLNNRCF----------EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred HHHHHHHCCCHH----------HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 555666666655 56666666654333333444443334444444322211111111100
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC--CCCCchhhhhhhcchhHHHH
Q psy11738 168 ----LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY--PVKQDKDQCFEITDMPWYQR 241 (323)
Q Consensus 168 ----~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~ 241 (323)
...|+.++|...|... .|+ ..+|..+...|.+.|+.++|++.|++.... .|+... +..+..
T Consensus 531 i~~y~k~G~~~~A~~~f~~~---~~d--~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T--~~~ll~------ 597 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH---EKD--VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT--FISLLC------ 597 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc---CCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc--HHHHHH------
Confidence 1235667787777765 443 366777777888888888888888876653 333211 111100
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHh---hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 242 KIANAIFDTLPTSSYEEALKYFLEAEK---QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 242 ~~a~~~~~~~~~~~~~~Al~~~~~a~~---~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+ ....|.+++|..+|....+ +.|+ ...|..+..+|.+.|+.++|.+.+++. .+.|+
T Consensus 598 ----a---~~~~g~v~ea~~~f~~M~~~~gi~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 598 ----A---CSRSGMVTQGLEYFHSMEEKYSITPN--LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred ----H---HhhcChHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 0 1125677777777776653 3454 255667777777777777777777663 34444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=77.64 Aligned_cols=109 Identities=10% Similarity=0.011 Sum_probs=99.2
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHH
Q psy11738 82 VYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161 (323)
Q Consensus 82 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 161 (323)
...+..+.++.-+..+..|.-++..|++. +|...|.-..-.+|.++..+..||.+++.++++
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~----------eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y-------- 87 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLD----------EAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF-------- 87 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH--------
Confidence 34456778888888899999999999999 888999999999999999999999999998765
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
++|+..|-.+..+++++ +...+..|.||..+|+.+.|..+|+.++..
T Consensus 88 ------------~~Ai~~Y~~A~~l~~~d-p~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 88 ------------QKACDLYAVAFTLLKND-YRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ------------HHHHHHHHHHHHcccCC-CCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 99999999999999998 688999999999999999999999999884
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-07 Score=81.72 Aligned_cols=123 Identities=19% Similarity=0.099 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC--CHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE--NYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
.+.|.+.++..-+.+.+. ..+.+..+.+....| ++.+|...|+......+..... +.. .+.+...
T Consensus 147 ~dlA~k~l~~~~~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~----lng-------~A~~~l~- 213 (290)
T PF04733_consen 147 PDLAEKELKNMQQIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKL----LNG-------LAVCHLQ- 213 (290)
T ss_dssp HHHHHHHHHHHHCCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHH----HHH-------HHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHH----HHH-------HHHHHHH-
Confidence 377888887777777664 333444444444455 4777888888876654443211 111 1222222
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH-HHHHHHHHHhhCCCChhHHH
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY-EQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~-~~A~~~~~~al~~~~~~~~~ 311 (323)
.|+|++|...+.+++..+|++ +.++.++..+...+|+. +.+.+++.+.....|.....
T Consensus 214 --~~~~~eAe~~L~~al~~~~~~-~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 214 --LGHYEEAEELLEEALEKDPND-PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp --CT-HHHHHHHHHHHCCC-CCH-HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred --hCCHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 678888888888888888887 67788888888888888 44556776666666654443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.1e-08 Score=83.32 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 171 SSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|++|+..|++.++..|+.. +.+++.+|.+|...|++++|+..|+++++..|++.
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~---------------------- 214 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP---------------------- 214 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc----------------------
Confidence 456999999999999999862 36889999999999999999998888888766542
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
.. +.+++.+|.+|..+|++++|+..|+++++..|+++..
T Consensus 215 -----------------------~~-~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 215 -----------------------KA-ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred -----------------------ch-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 23 5678889999999999999999999999888887643
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=73.50 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 172 SYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
+...+...+++.++-.|+. ...+.+.+|.++...|++++|+..|++++...|+...... ....++..++.
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~--------a~l~LA~~~~~ 97 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL--------ARLRLARILLQ 97 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH--------HHHHHHHHHHH
Confidence 3477777888888888885 1367888999999999999999999999997655422111 11133444443
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
.+++++|+..+..+ .-.+ +.+..+..+|.+|...|++++|+..|++|+
T Consensus 98 ---~~~~d~Al~~L~~~-~~~~-~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 ---QGQYDEALATLQQI-PDEA-FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---cCCHHHHHHHHHhc-cCcc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 78999999999763 2233 335778899999999999999999999985
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-07 Score=81.42 Aligned_cols=161 Identities=19% Similarity=0.102 Sum_probs=80.2
Q ss_pred HHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHK 97 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 97 (323)
+..|..++..|++++|+.++++. .+.|.......+|..++ +++.|...++..-+++++..-...
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~-------------R~dlA~k~l~~~~~~~eD~~l~qL 169 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMN-------------RPDLAEKELKNMQQIDEDSILTQL 169 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT--------------HHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcC-------------CHHHHHHHHHHHHhcCCcHHHHHH
Confidence 33444444455555555544442 44454444455555444 334455555555555555444433
Q ss_pred HHHHHHHHhhc--ccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHH
Q psy11738 98 WLAVILNEKAT--LEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEE 175 (323)
Q Consensus 98 ~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
..+.+-...|. +. +|.-.|+......|.++.....++.++..+|++ ++
T Consensus 170 a~awv~l~~g~e~~~----------~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~--------------------~e 219 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQ----------DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY--------------------EE 219 (290)
T ss_dssp HHHHHHHHHTTTCCC----------HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H--------------------HH
T ss_pred HHHHHHHHhCchhHH----------HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH--------------------HH
Confidence 33434333332 22 445555555555555555555555555555433 66
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCH-HHHHHHHHHHhCCCCCC
Q psy11738 176 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY-EQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~-~~A~~~~~~al~~~~~~ 225 (323)
|...++.+++.+|++ +.++.++..+...+|+. +.+.+++.+....+|.+
T Consensus 220 Ae~~L~~al~~~~~~-~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 220 AEELLEEALEKDPND-PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHCCC-CCH-HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 666666666666665 45666666666666665 34445555555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-07 Score=78.51 Aligned_cols=249 Identities=13% Similarity=0.146 Sum_probs=149.2
Q ss_pred hhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIH 96 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 96 (323)
..+.++...+|+.|+.+++-. ...........+|.||+.+|++ ++|+..|+.+.+.+.-+++..
T Consensus 28 ~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY-------------~~Al~~Y~~~~~~~~~~~el~ 94 (557)
T KOG3785|consen 28 ELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY-------------EEALNVYTFLMNKDDAPAELG 94 (557)
T ss_pred hHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH-------------HHHHHHHHHHhccCCCCcccc
Confidence 467788889999999999864 2223334556689999999954 669999999999887788899
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc---HHHHHHHHHhhcCC-----
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP---WYQRKIANAIFDTL----- 168 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~---~~~~~~~~~~~~~~----- 168 (323)
.+++.++..+|++..+ ... ....|+++.....|=.+-...++-. .+...+....-..+
T Consensus 95 vnLAcc~FyLg~Y~eA----------~~~----~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsv 160 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEA----------KSI----AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASV 160 (557)
T ss_pred hhHHHHHHHHHHHHHH----------HHH----HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHH
Confidence 9999999999999833 222 2223333332211111111111110 00000000000000
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhH-HHHHHHH
Q psy11738 169 --PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPW-YQRKIAN 245 (323)
Q Consensus 169 --~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~a~ 245 (323)
....|++||..|++.+.-+|+. ...-.+++.||.++.=++-+-+.+.--++-.|++..+.........- +..+.+.
T Consensus 161 hYmR~HYQeAIdvYkrvL~dn~ey-~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 161 HYMRMHYQEAIDVYKRVLQDNPEY-IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhh-hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 0024699999999999999995 46667799999999999999998888888888886554322111100 0000000
Q ss_pred Hhh---ccCCCCcH-----------------HHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 246 AIF---DTLPTSSY-----------------EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 246 ~~~---~~~~~~~~-----------------~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
.-. .......| +.|++.+-..++.- +.+..+|...|..+++.++|+...+.
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhh
Confidence 000 00001112 33333333333333 34567888889999999999887754
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-07 Score=80.56 Aligned_cols=83 Identities=25% Similarity=0.266 Sum_probs=54.9
Q ss_pred HHHHHHHHHHccCC--CC----hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-----CC
Q psy11738 121 TIKHHMNKAIELKP--DD----STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-----PL 189 (323)
Q Consensus 121 ~a~~~~~~al~l~p--~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~ 189 (323)
+|++++++|+.+-- ++ ...+..+|.+|... .+++++|+++|++|+++- +.
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~-------------------~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ-------------------LGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT-------------------T--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHHHHHCCChh
Confidence 66677777776521 11 22344555555443 035599999999999872 12
Q ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 190 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 190 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
....++..+|.++.+.|+|++|++.|++.....
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 223567889999999999999999999987653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-06 Score=72.91 Aligned_cols=255 Identities=14% Similarity=0.053 Sum_probs=166.4
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-EYKED--VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~--~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
..+.+.+.-.++.-+...-..|+++.|=..+.++ +-+++ .......++.....|++.. |..-..
T Consensus 111 ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~a-------------A~~~v~ 177 (400)
T COG3071 111 AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPA-------------ARENVD 177 (400)
T ss_pred hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchh-------------HHHHHH
Confidence 4455666677777888888899999999999887 44333 4445556666666665544 899999
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHh------------------h
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLG------------------M 145 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg------------------~ 145 (323)
.+++..|.++.+......+|...|++......+.. +.++-.+++....-+...+ .
T Consensus 178 ~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~-------L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 178 QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK-------LRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH-------HHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 99999999999998888999999988743322111 1111111111111010000 0
Q ss_pred HHHHhc----CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 146 WCFEIT----DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 146 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
+.-.+. +-+.+.-.++.- -+..+++++|.+..+.+++..-+. .....+ -..+.+++..=++..++.++.
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~---li~l~~~~~A~~~i~~~Lk~~~D~--~L~~~~--~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAER---LIRLGDHDEAQEIIEDALKRQWDP--RLCRLI--PRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHH---HHHcCChHHHHHHHHHHHHhccCh--hHHHHH--hhcCCCCchHHHHHHHHHHHh
Confidence 000000 000000000000 012356799999999999986663 312222 235778889999999999999
Q ss_pred CCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 222 PVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
.|+++.. ..+++.++ ++ .+.|.+|-++|+.+++..|. ...+..+|.++..+|+..+|..+++.+
T Consensus 324 h~~~p~L-~~tLG~L~----------~k---~~~w~kA~~~leaAl~~~~s--~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 324 HPEDPLL-LSTLGRLA----------LK---NKLWGKASEALEAALKLRPS--ASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred CCCChhH-HHHHHHHH----------HH---hhHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9988732 22333332 22 57899999999999999997 467899999999999999999999999
Q ss_pred hCC
Q psy11738 302 KNY 304 (323)
Q Consensus 302 l~~ 304 (323)
+.+
T Consensus 388 L~~ 390 (400)
T COG3071 388 LLL 390 (400)
T ss_pred HHH
Confidence 854
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.9e-08 Score=82.37 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=88.9
Q ss_pred HHHHHHHHHH-HHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 94 AIHKWLAVIL-NEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
...+..+..+ ...+++. +|+..|++.++..|++ +.+++.+|.+++..|++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~----------~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~---------------- 196 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQD----------DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK---------------- 196 (263)
T ss_pred HHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH----------------
Confidence 4556666655 3456777 8999999999999998 57999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 170 TSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|+++++..|++ .+.+++.+|.++..+|++++|+..|+++++..|++..
T Consensus 197 ----~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 197 ----DDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred ----HHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 99999999999988874 2478999999999999999999999999999998753
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=66.89 Aligned_cols=63 Identities=22% Similarity=0.362 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHH
Q psy11738 98 WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEAL 177 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (323)
.+|..+...|++. +|++.|+++++.+|+++.+++.+|.+++..|++ ++|+
T Consensus 2 ~~a~~~~~~g~~~----------~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~--------------------~~A~ 51 (65)
T PF13432_consen 2 ALARALYQQGDYD----------EAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY--------------------DEAL 51 (65)
T ss_dssp HHHHHHHHCTHHH----------HHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H--------------------HHHH
T ss_pred hHHHHHHHcCCHH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH--------------------HHHH
Confidence 5688888889888 899999999999999999999999999998765 9999
Q ss_pred HHHHHHHhcCCCc
Q psy11738 178 KYFLEAEKQHPLF 190 (323)
Q Consensus 178 ~~~~~al~~~p~~ 190 (323)
..|+++++++|++
T Consensus 52 ~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 52 AYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHSTT-
T ss_pred HHHHHHHHHCcCC
Confidence 9999999999986
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-08 Score=84.46 Aligned_cols=99 Identities=20% Similarity=0.167 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
.+|.+++.|+..++.+. +|+.++.++|.++|+|.-++|..|.++..++++
T Consensus 258 ~~~lNlA~c~lKl~~~~----------~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~-------------------- 307 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYK----------EAIESCNKVLELDPNNVKALYRRGQALLALGEY-------------------- 307 (397)
T ss_pred HHhhHHHHHHHhhhhHH----------HHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH--------------------
Confidence 35788999999999998 899999999999999999999999999998766
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH-HHHHHHHhCCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPV 223 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~~~~ 223 (323)
+.|+..|+++++++|+| ..+...|..|-.+..++.+. .+.|.+.+..-+
T Consensus 308 ~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 308 DLARDDFQKALKLEPSN-KAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999 68888888888777777654 788888887644
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=86.21 Aligned_cols=237 Identities=10% Similarity=-0.014 Sum_probs=156.6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
.++-++|+.+|.+|.|++||++|.+. .+|-|+-++...|.+|..+.. |..|...++.|+.++...
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~-------------FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS-------------FAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH-------------HHHHHHhHHHHHHhhHHH
Confidence 34567899999999999999999986 589899999999999988774 455899999999999887
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
..+|...+..-..+|... +|++.++.++++.|++.+..-.++.+-.-. .+.|. ..++. |
T Consensus 165 ~KAYSRR~~AR~~Lg~~~----------EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~------E~~I~--~KsT~--G- 223 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNM----------EAKKDCETVLALEPKNIELKKSLARINSLR------ERKIA--TKSTP--G- 223 (536)
T ss_pred HHHHHHHHHHHHHHhhHH----------HHHHhHHHHHhhCcccHHHHHHHHHhcchH------hhhHH--hhcCC--C-
Confidence 777777776666666555 899999999999999877766655442210 11111 00000 0
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCC
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLP 252 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 252 (323)
+-+|..--..++.+. .-|..+...|.++.++.+|-+-...+..+... ....+.+. .
T Consensus 224 ~~~A~Q~~~Q~l~~K---------~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L---~~~~~~~~------------K 279 (536)
T KOG4648|consen 224 FTPARQGMIQILPIK---------KPGYKFSKKAMRSVPVVDVVSPRATIDDSNQL---RISDEDID------------K 279 (536)
T ss_pred CCccccchhhhcccc---------CcchhhhhhhccccceeEeeccccccCccccC---cccHHHHH------------H
Confidence 122222222222111 11334456677777777776655544333211 11111110 1
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
..+++.++..+.+++..+|.. ....-..|.+-.-.|...++...++.++.+.|..+.
T Consensus 280 I~~~~~~~~~~~~~~~~~~s~-~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 280 IFNSNCGIIEEVKKTNPKPTP-MPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred HhhcchhHHHHHHhcCCCCCc-CcccCCCchhHHHHhhhhhcCcchhheeeecccccc
Confidence 345778888888998888876 344556677777788888999999999988777443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=73.26 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhccCCCCc---HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHH
Q psy11738 75 ILSAYFLVYNALPQHEDH---YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCF 148 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~ 148 (323)
...+...++..++-+|+. ..+.+.+|.++...|+++ +|...|+.++...|+. +.+...|+.++.
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~----------~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYD----------EAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 344666777888888887 567788899999999999 8999999999988765 457888899988
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
..|++ ++|+..++.. . ++.+.+.++..+|.+|...|++++|+..|++|+
T Consensus 97 ~~~~~--------------------d~Al~~L~~~-~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 QQGQY--------------------DEALATLQQI-P-DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HcCCH--------------------HHHHHHHHhc-c-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 87655 9999999763 2 222335778889999999999999999999885
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-05 Score=69.02 Aligned_cols=220 Identities=15% Similarity=0.124 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCc--HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 69 ADKKQLILSAYFLVYNALPQHEDH--YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 69 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
|++...++.|...|+-|+..-|.+ -+.+..+-..--.-|+-.|+...+-. +=+-.|++.++-+|.|.++|+.+-++
T Consensus 254 Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~--KRk~qYE~~v~~np~nYDsWfdylrL 331 (677)
T KOG1915|consen 254 EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG--KRKFQYEKEVSKNPYNYDSWFDYLRL 331 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh--hhhhHHHHHHHhCCCCchHHHHHHHH
Confidence 345677899999999999999987 33333333333334555544332211 11124788888899999988887777
Q ss_pred HHHhcCCcHHHHHHHHH------------------------hhcCCCCCCHHHHHHHHHHHHhcCCCc---hhHHHHHHH
Q psy11738 147 CFEITDMPWYQRKIANA------------------------IFDTLPTSSYEEALKYFLEAEKQHPLF---YSQNVLMLG 199 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg 199 (323)
--..|+...+...+..+ ++..+...+.+.+...|+.++.+-|.- .+..|++.+
T Consensus 332 ~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA 411 (677)
T KOG1915|consen 332 EESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYA 411 (677)
T ss_pred HHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 77766654433332222 233334556788999999999997763 146688889
Q ss_pred HHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhH
Q psy11738 200 KTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 279 (323)
Q Consensus 200 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~ 279 (323)
....++.+...|.+.+-.|+-..|.+..-..+ ..+ . ...++++.....|.+-++.+|.+ -.+|.
T Consensus 412 ~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~Y--Iel-----E--------lqL~efDRcRkLYEkfle~~Pe~-c~~W~ 475 (677)
T KOG1915|consen 412 QFEIRQLNLTGARKILGNAIGKCPKDKLFKGY--IEL-----E--------LQLREFDRCRKLYEKFLEFSPEN-CYAWS 475 (677)
T ss_pred HHHHHHcccHHHHHHHHHHhccCCchhHHHHH--HHH-----H--------HHHhhHHHHHHHHHHHHhcChHh-hHHHH
Confidence 99999999999999999999999998632221 111 0 11467889999999999999998 58899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 280 MLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 280 ~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
..|..-..+|+.+.|...|+-|+..|.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 999999999999999999999988764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-07 Score=84.07 Aligned_cols=116 Identities=19% Similarity=0.149 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.++++.|+..+++..+.+|+ +...++.++...++.. +|++.+.++++..|.+...+...+.++...+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~----------~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEV----------EAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 34688999999999999876 4566788887766555 8999999999999999999999999998876
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
++ +.|++..+++.++.|+. -.+|+.|+.+|..+|++++|+-.++..--.
T Consensus 249 ~~--------------------~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KY--------------------ELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CH--------------------HHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 55 99999999999999998 599999999999999999999998865444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=82.57 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCCCC----Cchhhh-hhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVK----QDKDQC-FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 269 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~----~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~ 269 (323)
.-.-|..|.+.|+|..|..-|++|++.-+. +.+... ..-..+.+ ...++-+++ ..+.|.+|+..+.+++.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~-~lNlA~c~l---Kl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLAC-HLNLAACYL---KLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH-hhHHHHHHH---hhhhHHHHHHHHHHHHhc
Confidence 445688888999999999999998766322 111111 00001111 112222222 378899999999999999
Q ss_pred CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 270 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 270 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
+|++ ..++|..|.++..+|+++.|+..|++++++.|.+.+.
T Consensus 287 ~~~N-~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 287 DPNN-VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred CCCc-hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 9999 8999999999999999999999999999999887653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-05 Score=63.60 Aligned_cols=223 Identities=22% Similarity=0.252 Sum_probs=163.1
Q ss_pred hccHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc--CCCCcHHHHHHHH
Q psy11738 27 EQQFEEVNKMLESS--EYKE--DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP--QHEDHYAIHKWLA 100 (323)
Q Consensus 27 ~~~~~~A~~~~~~~--~~~~--~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~ 100 (323)
.+.+..+...+... ..+. ........+..+...+. +..+...+...+. ..+.....+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGR-------------LEEALELLEKALELELLPNLAEALLNLG 102 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHccc-------------HHHHHHHHHHHHhhhhccchHHHHHHHH
Confidence 35666666666554 2332 24556666666666553 4557777777776 7788888888888
Q ss_pred HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh-HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy11738 101 VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM-WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179 (323)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (323)
..+...+.+. .+...+.+++...+.+.......+. ++...+++ +.|+..
T Consensus 103 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~a~~~ 152 (291)
T COG0457 103 LLLEALGKYE----------EALELLEKALALDPDPDLAEALLALGALYELGDY--------------------EEALEL 152 (291)
T ss_pred HHHHHHhhHH----------HHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCH--------------------HHHHHH
Confidence 8888888776 7888899999988888666666666 66666544 999999
Q ss_pred HHHHHhcCCC--chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC-chhhhhhhcchhHHHHHHHHHhhccCCCCcH
Q psy11738 180 FLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ-DKDQCFEITDMPWYQRKIANAIFDTLPTSSY 256 (323)
Q Consensus 180 ~~~al~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 256 (323)
|.+++..+|. ........++..+...++++.|+..+.+++...+.. ..... .++..+. ..+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~ 218 (291)
T COG0457 153 YEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL-----------NLGLLYL---KLGKY 218 (291)
T ss_pred HHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH-----------HhhHHHH---HcccH
Confidence 9999888772 334667777777889999999999999999988773 22111 1111111 14578
Q ss_pred HHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 257 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 257 ~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+.|+..+..++...|.. ...+..++..+...+..+++...+.+++...|.
T Consensus 219 ~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDN-AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCccc-HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999975 566778888888777899999999999998875
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.2e-06 Score=67.69 Aligned_cols=233 Identities=18% Similarity=0.150 Sum_probs=120.6
Q ss_pred CCchhhhcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q psy11738 1 MSSDEAAKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAY 79 (323)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~ 79 (323)
|+++++++. +-+-.+..+|=.|+|..+|....+. ..+..++...-+.++|..+|.+....
T Consensus 1 m~~~~~g~~------d~LF~iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~------------- 61 (299)
T KOG3081|consen 1 MSSMEAGPE------DELFNIRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVI------------- 61 (299)
T ss_pred CCccccCcc------hhHHHHHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccc-------------
Confidence 455555544 3344567778899999999988887 45588899999999999999876531
Q ss_pred HHHHhhccCCCCcHH---HHHHHHHHHHHhhcccchHHHHHhHHHHH-HHHHHHHccCCCChhHHHHHh-hHHHHhcCCc
Q psy11738 80 FLVYNALPQHEDHYA---IHKWLAVILNEKATLEGTKARIQQLETIK-HHMNKAIELKPDDSTTLFMLG-MWCFEITDMP 154 (323)
Q Consensus 80 ~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~al~l~p~~~~~~~~lg-~~~~~~~~~~ 154 (323)
. ++.+..+. +...++.....-++-+ ... +..+..+.-...+-..+..++ .+|...+
T Consensus 62 ~------eI~~~~~~~lqAvr~~a~~~~~e~~~~----------~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~--- 122 (299)
T KOG3081|consen 62 S------EIKEGKATPLQAVRLLAEYLELESNKK----------SILASLYELVADSTDGSNLIDLLLAAIIYMHDG--- 122 (299)
T ss_pred c------ccccccCChHHHHHHHHHHhhCcchhH----------HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCC---
Confidence 1 11111111 1111122221111111 111 122222222222222344443 3333333
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
++++|++....... ..+...=-.++.++.+++-|...+++..+++.+.. +.
T Consensus 123 -----------------~~deAl~~~~~~~~------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t------Lt 173 (299)
T KOG3081|consen 123 -----------------DFDEALKALHLGEN------LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT------LT 173 (299)
T ss_pred -----------------ChHHHHHHHhccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH------HH
Confidence 34777666655222 23333344566677777777777777776654321 11
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++..+-+++ ...+++.+|.-+|+...+..|.. +......+.|++.+|++++|...++.||.-+++
T Consensus 174 QLA~awv~la------~ggek~qdAfyifeE~s~k~~~T-~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 174 QLAQAWVKLA------TGGEKIQDAFYIFEELSEKTPPT-PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HHHHHHHHHh------ccchhhhhHHHHHHHHhcccCCC-hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 1111111211 11345666666666666533322 455566666666666666666666666665444
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-06 Score=75.43 Aligned_cols=249 Identities=16% Similarity=0.157 Sum_probs=155.0
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS-EYKED----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
+.++..++.|-.++.+.++++|+....+. ..-++ .-.+--+..+.+.+|.+ ++.+.-|.....-+.
T Consensus 4 ~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y---------~~mL~~a~sqi~~a~ 74 (518)
T KOG1941|consen 4 DQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRY---------KEMLKFAVSQIDTAR 74 (518)
T ss_pred chhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHH---------HHHHHHHHHHHHHHH
Confidence 34567788999999999999998766653 22222 22223344555555533 223334444444444
Q ss_pred cCCCC--cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh-----hHHHHHhhHHHHhcCCcHHHHH
Q psy11738 87 PQHED--HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS-----TTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 87 ~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~-----~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
+.... .-+++.+++..+..+.++. +++.+-+--+.+-...+ .....+|+.+..++.+
T Consensus 75 ~~~ds~~~~ea~lnlar~~e~l~~f~----------kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~f------ 138 (518)
T KOG1941|consen 75 ELEDSDFLLEAYLNLARSNEKLCEFH----------KTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVF------ 138 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHH------
Confidence 44322 1223344444444444433 66666666666543333 3455677777766544
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc-hhhhhhh
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD-KDQCFEI 233 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~ 233 (323)
+++++.|++|+++-.++ ...++..||..+.+..|+++|.-+..+|..+..... .+....+
T Consensus 139 --------------q~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 139 --------------QKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred --------------HHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 99999999999983322 125788899999999999999999999987732221 2222233
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC------cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP------LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
..+..+....+.-. .|..-.|.++++++.++.- -. +....-+|.+|...|+.+.|+..|+.|....
T Consensus 205 r~~~lyhmaValR~-----~G~LgdA~e~C~Ea~klal~~Gdra~~-arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 205 RAMSLYHMAVALRL-----LGRLGDAMECCEEAMKLALQHGDRALQ-ARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHH-----hcccccHHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 33333333333222 4566688888888887732 22 3456778999999999999999999998663
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-06 Score=72.52 Aligned_cols=185 Identities=11% Similarity=0.036 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
..+|..|++++..-.+.+|.+-.+...+|.||+...++. .|.++|++.-.+.|.......+.+...++.+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~----------~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFA----------LAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 347888999999999999999999999999999999998 8889999999999998888888888777765
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
.+ .+|++...-.... |.-...+...-+.+.+..+++..+....++.-..+..+
T Consensus 93 i~--------------------ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad------ 145 (459)
T KOG4340|consen 93 IY--------------------ADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEAD------ 145 (459)
T ss_pred cc--------------------HHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccc------
Confidence 44 7777665544332 33212445555677778888888888777654322111
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.+.+.++. +++ .|+|+.|++-|..|++...-. +-.-++++.++...|++..|.++....++.
T Consensus 146 ~~in~gCl-------lyk---egqyEaAvqkFqaAlqvsGyq-pllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 146 GQINLGCL-------LYK---EGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred hhccchhe-------eec---cccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 12222232 222 789999999999999988755 566789999999999999999877666544
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.6e-07 Score=72.04 Aligned_cols=104 Identities=15% Similarity=0.219 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY 274 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~ 274 (323)
+-.-|.-+...|+|++|..-|..|+.+.|.-..... .+.+..+ |.+++ ..++++.|+..+.++++++|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~r----sIly~Nr--aaa~i---Kl~k~e~aI~dcsKaiel~pty- 167 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEER----SILYSNR--AAALI---KLRKWESAIEDCSKAIELNPTY- 167 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHH----HHHHhhh--HHHHH---HhhhHHHHHHHHHhhHhcCchh-
Confidence 444566677888999999999999988876543221 1111111 11111 2578999999999999999998
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
..++...|.+|..+.++++|++.|++.++++|..
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 7888899999999999999999999999998873
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=78.46 Aligned_cols=172 Identities=17% Similarity=0.125 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHH
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCF 148 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~ 148 (323)
.+.|++|.....+.+.+.|+...+....-.++...++|+ +| + +.++.++.+. ...+..+.|+|
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~----------~A---L-k~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYE----------DA---L-KLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHH----------HH---H-HHHHhcchhhhcchhhHHHHHHHH
Confidence 457899999999999999999999998888998888888 44 3 5566666421 12256788888
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
+.+.. ++|++.++ .+++.. ....-..|.+++++|+|++|++.|+..++-+..+.+.
T Consensus 91 rlnk~--------------------Dealk~~~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 91 RLNKL--------------------DEALKTLK---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HcccH--------------------HHHHHHHh---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 88766 99999999 344443 2456667999999999999999999998876554432
Q ss_pred hh-hhhcchhHHHHHHHHHhhccCCCCcHHHHHHH-HHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 229 QC-FEITDMPWYQRKIANAIFDTLPTSSYEEALKY-FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 229 ~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~-~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
.. ..+. + ...++.. ..+.+...|+..-..+|+.+-++...|+|.+|++.+++|
T Consensus 147 ~~r~nl~---------a-----------~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 147 ERRANLL---------A-----------VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHHHHH---------H-----------HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 11 1110 0 0011111 455566666643577899999999999999999999999
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=83.96 Aligned_cols=70 Identities=19% Similarity=0.088 Sum_probs=64.7
Q ss_pred ccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHHcCC
Q psy11738 131 ELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ---NVLMLGKTYMRLEN 207 (323)
Q Consensus 131 ~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~lg~~y~~~g~ 207 (323)
..+|+++.+++++|..++..|++ ++|+..|+++++++|++ .. +|+++|.||..+|+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGry--------------------eEAIa~f~rALeL~Pd~-aeA~~A~yNLAcaya~LGr 127 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRV--------------------KDALAQFETALELNPNP-DEAQAAYYNKACCHAYREE 127 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHHHHcCC
Confidence 36899999999999999998755 99999999999999997 54 49999999999999
Q ss_pred HHHHHHHHHHHhCC
Q psy11738 208 YEQAAYYLEMTKNY 221 (323)
Q Consensus 208 ~~~A~~~~~~al~~ 221 (323)
+++|+.++++|+.+
T Consensus 128 ~dEAla~LrrALel 141 (453)
T PLN03098 128 GKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999997
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=62.18 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=54.4
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh-HHHHHHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ-EATKLLE 315 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 315 (323)
.|++++|+..|++++..+|++ ..+++.+|.+|...|++++|...+++++...|++ ....++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 689999999999999999998 7999999999999999999999999999998884 3334443
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-05 Score=65.28 Aligned_cols=189 Identities=25% Similarity=0.275 Sum_probs=148.5
Q ss_pred HHHHHHHHHHhhccCCCCc--HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc--cCCCChhHHHHHhhHHHH
Q psy11738 74 LILSAYFLVYNALPQHEDH--YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE--LKPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--l~p~~~~~~~~lg~~~~~ 149 (323)
.+..+...+..++...+.. .......+..+...+.+. .+...+...+. ..+.....+..+|.+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLE----------EALELLEKALELELLPNLAEALLNLGLLLEA 107 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHH----------HHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 4566788888888888763 666777788888777777 66667777776 788888899999988887
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHHcCCHHHHHHHHHHHhCCCCC--Cc
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK-TYMRLENYEQAAYYLEMTKNYPVK--QD 226 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~-~y~~~g~~~~A~~~~~~al~~~~~--~~ 226 (323)
.+.+ ..++..+..++...+.. .......+. ++...|+++.|+..+.+++..+|. ..
T Consensus 108 ~~~~--------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (291)
T COG0457 108 LGKY--------------------EEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNEL 166 (291)
T ss_pred HhhH--------------------HHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccch
Confidence 7654 99999999999988875 355666666 899999999999999999887663 21
Q ss_pred hhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc-chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 227 KDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 227 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
.......... ....++++.|+..+.+++...|. . ...+..++.++...++++.|...+.+++...
T Consensus 167 ~~~~~~~~~~-------------~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 167 AEALLALGAL-------------LEALGRYEEALELLEKALKLNPDDD-AEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred HHHHHHhhhH-------------HHHhcCHHHHHHHHHHHHhhCcccc-hHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 1111111000 01257899999999999999998 5 6788999999999999999999999999998
Q ss_pred Ch
Q psy11738 306 AV 307 (323)
Q Consensus 306 ~~ 307 (323)
|.
T Consensus 233 ~~ 234 (291)
T COG0457 233 PD 234 (291)
T ss_pred cc
Confidence 76
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-05 Score=80.99 Aligned_cols=195 Identities=15% Similarity=0.057 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhhccCCCC---------cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh-----hH
Q psy11738 74 LILSAYFLVYNALPQHED---------HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS-----TT 139 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~-----~~ 139 (323)
++++|...+..+....+. .......+|.++...|++. +|..++.+++...|... .+
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPE----------EAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHH----------HHHHHHHHHHhcCCCccHHHHHHH
Confidence 456677777666543221 2234445566677777776 78888999988655432 23
Q ss_pred HHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 140 LFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 140 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
...+|.++...|++ ++|...+.+++..... ....++..+|.++...|++++|..+
T Consensus 494 ~~~lg~~~~~~G~~--------------------~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 494 TSVLGEVHHCKGEL--------------------ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred HHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45566666666544 9999999999876222 1124577889999999999999999
Q ss_pred HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC----cchhhhhHHHHHHHHHhcC
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP----LFYSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p----~~~~~~~~~lg~~y~~~g~ 290 (323)
+++++.+........... ..+....++...+. .|++++|...+.+++.+.+ ......+..+|.++...|+
T Consensus 554 ~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~---~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 554 QEKAFQLIEEQHLEQLPM---HEFLLRIRAQLLWE---WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHhccccccH---HHHHHHHHHHHHHH---hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 999987633211000000 00001112222222 5899999999999887632 2224556778999999999
Q ss_pred HHHHHHHHHHhhCC
Q psy11738 291 YEQAAYYLEMTKNY 304 (323)
Q Consensus 291 ~~~A~~~~~~al~~ 304 (323)
+++|...+.++..+
T Consensus 628 ~~~A~~~l~~a~~~ 641 (903)
T PRK04841 628 LDNARRYLNRLENL 641 (903)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-06 Score=71.24 Aligned_cols=188 Identities=12% Similarity=0.117 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhhccCCCCcH-HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 73 QLILSAYFLVYNALPQHEDHY-AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
..|..|+.+++-.+..+.+.. ....|+|.|+..+|+++ +|...|+-+...+.-+.+.+.+|+-+++..|
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~----------~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYE----------EALNVYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHH----------HHHHHHHHHhccCCCCcccchhHHHHHHHHH
Confidence 345668999988887765544 67799999999999999 8889999999988888899999999988887
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
.+ .+|...-.+ -|+. +..-..|-++-.+.|+-++-.. |...+.-.- ....
T Consensus 106 ~Y--------------------~eA~~~~~k----a~k~-pL~~RLlfhlahklndEk~~~~-fh~~LqD~~----EdqL 155 (557)
T KOG3785|consen 106 QY--------------------IEAKSIAEK----APKT-PLCIRLLFHLAHKLNDEKRILT-FHSSLQDTL----EDQL 155 (557)
T ss_pred HH--------------------HHHHHHHhh----CCCC-hHHHHHHHHHHHHhCcHHHHHH-HHHHHhhhH----HHHH
Confidence 54 777666555 4554 3333334455566676554433 333332111 1112
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
+++++.+ . ...|++||+.|++++..+|+. ...-.++|.||.++.=++-+.+.+.--+...|++...
T Consensus 156 SLAsvhY-m------------R~HYQeAIdvYkrvL~dn~ey-~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 156 SLASVHY-M------------RMHYQEAIDVYKRVLQDNPEY-IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred hHHHHHH-H------------HHHHHHHHHHHHHHHhcChhh-hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence 2222211 1 235899999999999999998 6777899999999999999998888878887776654
Q ss_pred HHH
Q psy11738 312 KLL 314 (323)
Q Consensus 312 ~~l 314 (323)
.-|
T Consensus 222 ~NL 224 (557)
T KOG3785|consen 222 KNL 224 (557)
T ss_pred HHH
Confidence 433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=78.05 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
++++.|+..|++..+.+|+. ...++.++...++..+|+..++++++..|.+...... -+..++
T Consensus 183 ~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~-----------Qa~fLl-- 245 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNL-----------QAEFLL-- 245 (395)
T ss_pred ccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH-----------HHHHHH--
Confidence 57899999999999998863 4558999999999999999999999999988433220 111122
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
..++++.|+...++++.+.|+. -..|+.|+.+|..+|+++.|+-.++..--..+.
T Consensus 246 -~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~ 300 (395)
T PF09295_consen 246 -SKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENALLALNSCPMLTYK 300 (395)
T ss_pred -hcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCc
Confidence 2688999999999999999998 589999999999999999999888766544433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.1e-08 Score=63.72 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
.|++++|+..+++++..+|+++++.+.+|.++...|++. +|...+.+++..+|+++..+..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~----------~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYD----------EAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HH----------HHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 468899999999999999999999999999999999999 8999999999999999888877765
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.3e-07 Score=80.29 Aligned_cols=214 Identities=17% Similarity=0.133 Sum_probs=122.5
Q ss_pred hhHHHHHHhhhHHHh-hccHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 12 KVSEEFLKKSDDLFE-EQQFEEVNKMLESS----EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~----~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
+.+.+++.+|-..|+ .|++++|...+.++ ...++ .+..|.+|...+... ++.++++|+.++++|+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---~~~Aa~~~~~Aa~~~-------k~~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---KFEAAKAYEEAANCY-------KKGDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHH-------HHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH-------HhhCHHHHHHHHHHHH
Confidence 344455555555544 47777777666654 11111 112222222222211 1224566777777777
Q ss_pred cCCCC------cHHHHHHHHHHHHHh-hcccchHHHHHhHHHHHHHHHHHHccCCCCh------hHHHHHhhHHHHhcCC
Q psy11738 87 PQHED------HYAIHKWLAVILNEK-ATLEGTKARIQQLETIKHHMNKAIELKPDDS------TTLFMLGMWCFEITDM 153 (323)
Q Consensus 87 ~~~p~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~------~~~~~lg~~~~~~~~~ 153 (323)
++.-. -+..+..+|.+|... ++++ +|+++|++|+.+-..+. ..+..+|.++...+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e----------~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~-- 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYE----------KAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG-- 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HH----------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC--
Confidence 66322 233455556666555 5555 88999999998743222 23445566665554
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
+|++|+..|++.....-++ ....++..+.|+...||+..|...+++....+|.-..
T Consensus 170 ------------------~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 170 ------------------RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp -------------------HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred ------------------CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 5699999999988753221 1134677889999999999999999999999987654
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
.+-..+ ...+..++ ...+...+++|+..|.+...++|.
T Consensus 232 s~E~~~------~~~l~~A~-~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 232 SREYKF------LEDLLEAY-EEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp SHHHHH------HHHHHHHH-HTT-CCCHHHHCHHHTTSS---HH
T ss_pred cHHHHH------HHHHHHHH-HhCCHHHHHHHHHHHcccCccHHH
Confidence 332222 11122222 234567899999999988888874
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-06 Score=64.27 Aligned_cols=97 Identities=16% Similarity=0.046 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|.+++.+|.++..+|+.+ +|+.+|.+++...+.. ..++..+|..+..+|++
T Consensus 1 ~~~~~~~A~a~d~~G~~~----------~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~---------------- 54 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREE----------EAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY---------------- 54 (120)
T ss_pred CchHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------------
Confidence 357889999999999998 9999999999987665 45788899888887655
Q ss_pred CCCHHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 170 TSSYEEALKYFLEAEKQHPL---FYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|+..+++++...|+ + ......++.++...|++++|+..+-.++.
T Consensus 55 ----deA~~~L~~~~~~~p~~~~~-~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 55 ----DEALALLEEALEEFPDDELN-AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----HHHHHHHHHHHHHCCCcccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999888 5 46677789999999999999999977764
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00054 Score=61.28 Aligned_cols=127 Identities=12% Similarity=0.081 Sum_probs=97.4
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHH
Q psy11738 178 KYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYE 257 (323)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (323)
-.|++-++-+|-++ ++|+.+-..-...|+.+...+.|++|+.--|-........- +++.-+-++++......+.+
T Consensus 309 ~qYE~~v~~np~nY-DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~R----YIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNY-DSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRR----YIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hHHHHHHHhCCCCc-hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHH----HHHHHHHHHHHHHHHhhhHH
Confidence 35777888899995 99999999999999999999999999987666443333111 11112334455555578899
Q ss_pred HHHHHHHHHHhhCCc----chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 258 EALKYFLEAEKQHPL----FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 258 ~Al~~~~~a~~~~p~----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
.+.+.|+.++++-|. + +.+|.+.|+.-....+...|...+-.|+-.-|.+..
T Consensus 384 rtr~vyq~~l~lIPHkkFtF-aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl 439 (677)
T KOG1915|consen 384 RTRQVYQACLDLIPHKKFTF-AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL 439 (677)
T ss_pred HHHHHHHHHHhhcCcccchH-HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH
Confidence 999999999999985 3 467888888888999999999999999988777554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-06 Score=63.03 Aligned_cols=99 Identities=16% Similarity=0.118 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
.+++.++.++-..|+.++|+.+|++++........... .+. .++.++. ..|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~-a~i-------~lastlr---~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRR-ALI-------QLASTLR---NLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHH-HHH-------HHHHHHH---HcCCHHHHHHHHHHHHHHCCC
Confidence 45778888888888888888888888876544432211 111 1222222 267888888888888887776
Q ss_pred ---chhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 273 ---FYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 273 ---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
. ......++.++...|++++|+..+-.++.
T Consensus 71 ~~~~-~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELN-AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 45667788888899999999888877653
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=62.11 Aligned_cols=57 Identities=25% Similarity=0.240 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|++|+++++++++++|++ +..++.+|.++..+|++.+|+..++++++.+|++...
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 45699999999999999998 6999999999999999999999999999999977543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-07 Score=64.65 Aligned_cols=71 Identities=25% Similarity=0.412 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
+.++.++|.+|..+|++++|+.+|++++.+... .| ..+|
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------------------------~~-------------~~~~ 43 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQ----------------------------LG-------------DDHP 43 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----------------------------TT-------------THHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------------------------HC-------------CCCH
Confidence 578999999999999999999999998774000 00 0123
Q ss_pred cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 272 LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 272 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.. +.++.++|.+|..+|++++|+.++++++++
T Consensus 44 ~~-a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 44 DT-ANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HH-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33 577899999999999999999999999875
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.7e-08 Score=66.03 Aligned_cols=68 Identities=26% Similarity=0.358 Sum_probs=55.7
Q ss_pred CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc----CCCc--hhHHHHHHHHHHHHcCC
Q psy11738 134 PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ----HPLF--YSQNVLMLGKTYMRLEN 207 (323)
Q Consensus 134 p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~--~~~~~~~lg~~y~~~g~ 207 (323)
|+-..++.++|.++...|++ ++|+.+|++++++ .+++ .+.++.++|.+|..+|+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~--------------------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRY--------------------DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-H--------------------HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 44466788999999988755 9999999999976 2222 24679999999999999
Q ss_pred HHHHHHHHHHHhCC
Q psy11738 208 YEQAAYYLEMTKNY 221 (323)
Q Consensus 208 ~~~A~~~~~~al~~ 221 (323)
+++|++++++++++
T Consensus 62 ~~~A~~~~~~al~i 75 (78)
T PF13424_consen 62 YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.1e-07 Score=59.98 Aligned_cols=68 Identities=22% Similarity=0.248 Sum_probs=58.2
Q ss_pred HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy11738 101 VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180 (323)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 180 (323)
.++...+++. +|.+++++++.++|+++..+..+|.+++..|++ .+|+..|
T Consensus 3 ~~~~~~~~~~----------~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~--------------------~~A~~~l 52 (73)
T PF13371_consen 3 QIYLQQEDYE----------EALEVLERALELDPDDPELWLQRARCLFQLGRY--------------------EEALEDL 52 (73)
T ss_pred HHHHhCCCHH----------HHHHHHHHHHHhCcccchhhHHHHHHHHHhccH--------------------HHHHHHH
Confidence 4566666776 899999999999999999999999999998766 9999999
Q ss_pred HHHHhcCCCchhHHHHHHH
Q psy11738 181 LEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 181 ~~al~~~p~~~~~~~~~lg 199 (323)
+++++..|++ +.+....+
T Consensus 53 ~~~l~~~p~~-~~~~~~~a 70 (73)
T PF13371_consen 53 ERALELSPDD-PDARALRA 70 (73)
T ss_pred HHHHHHCCCc-HHHHHHHH
Confidence 9999999997 56554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-05 Score=64.49 Aligned_cols=106 Identities=13% Similarity=0.126 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
.+..++..|..|..+|-+. -|+-.|.+++.+.|+-+.++..||..+...|++
T Consensus 64 RA~l~fERGvlYDSlGL~~----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~f------------------ 115 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRA----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF------------------ 115 (297)
T ss_pred HHHHHHHhcchhhhhhHHH----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccc------------------
Confidence 3444555566665555544 677779999999999999999999988887766
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
+-|.+.|...+++||++ .-++.+.|..++--|++.-|.+-+.+--.-||+++..
T Consensus 116 --daa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 116 --DAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred --hHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence 99999999999999997 6899999999999999999999999999999999864
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.3e-05 Score=75.47 Aligned_cols=237 Identities=15% Similarity=0.089 Sum_probs=147.2
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS----EYKED----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~----~~~~~----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
...+..+...|++++|...+..+ ....+ ...+..+|.++...|++ ++|..++++++.+.
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~-------------~~A~~~~~~al~~~ 561 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL-------------QAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHHH
Confidence 34555666778888888777765 11111 23445566777666654 44566555555432
Q ss_pred --------CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-----ChhHHHHHhhHHHHhcCCcHH
Q psy11738 90 --------EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-----DSTTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 90 --------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-----~~~~~~~lg~~~~~~~~~~~~ 156 (323)
|.....+..+|.++...|++. +|...+.+++.+.+. ...++..+|.++...|++
T Consensus 562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~--- 628 (903)
T PRK04841 562 EEQHLEQLPMHEFLLRIRAQLLWEWARLD----------EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDL--- 628 (903)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCH---
Confidence 112234456778888888888 777778877765332 233455567776666544
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHH----HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNV----LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~----~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
+.|...+..+..+.+... .... ......+...|+.+.|..++.......+.... .
T Consensus 629 -----------------~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~--~ 689 (903)
T PRK04841 629 -----------------DNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH--F 689 (903)
T ss_pred -----------------HHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch--h
Confidence 999999999877633210 1111 11234556789999999998886653221110 0
Q ss_pred hhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc-----chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 231 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 231 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~-----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
.. .....++..+. ..|++++|+..+.+++..... ....++..+|.++...|+.++|..++.+|+++.
T Consensus 690 -~~----~~~~~~a~~~~---~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 690 -LQ----GQWRNIARAQI---LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred -HH----HHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 00 00111222222 267899999999999876322 113568889999999999999999999999985
Q ss_pred Ch
Q psy11738 306 AV 307 (323)
Q Consensus 306 ~~ 307 (323)
..
T Consensus 762 ~~ 763 (903)
T PRK04841 762 NR 763 (903)
T ss_pred Cc
Confidence 54
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-06 Score=77.54 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=65.8
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH---HHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT---LFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~---~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
..+|+++.+++++|.+|..+|+++ +|+..|+++++++|++..+ |+++|.+|..+|+.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGrye----------EAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~---------- 128 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVK----------DALAQFETALELNPNPDEAQAAYYNKACCHAYREEG---------- 128 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------
Confidence 368999999999999999999999 9999999999999999965 99999999998766
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcC
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQH 187 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~ 187 (323)
++|+.++++|+++.
T Consensus 129 ----------dEAla~LrrALels 142 (453)
T PLN03098 129 ----------KKAADCLRTALRDY 142 (453)
T ss_pred ----------HHHHHHHHHHHHhc
Confidence 99999999999983
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00012 Score=60.55 Aligned_cols=178 Identities=11% Similarity=0.044 Sum_probs=126.0
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCC---CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKE---DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~---~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
+...++..+..+|...+..|++.+|+..++.+ ++|. ...+..-++.+++..++ ++.|+..++
T Consensus 29 ~~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~-------------y~~A~~~~d 95 (254)
T COG4105 29 VYNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGE-------------YDLALAYID 95 (254)
T ss_pred ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhccc-------------HHHHHHHHH
Confidence 44557788999999999999999999999987 4444 46677778888877664 567999999
Q ss_pred hhccCCCCcHHHH---HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH-----------------HHHH
Q psy11738 84 NALPQHEDHYAIH---KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT-----------------LFML 143 (323)
Q Consensus 84 ~al~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~-----------------~~~l 143 (323)
+-+.+.|.++++- +..|.++...-+. ..+-.....+|+..|+..+.--|+..-+ -..+
T Consensus 96 rFi~lyP~~~n~dY~~YlkgLs~~~~i~~--~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 96 RFIRLYPTHPNADYAYYLKGLSYFFQIDD--VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred HHHHhCCCCCChhHHHHHHHHHHhccCCc--cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999988854 3345443322111 1122233447778899999999986432 1223
Q ss_pred hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 144 GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
|++|...|. |--|+.-++..++--|+. ..+++..+..+|..+|-.++|...-. .+..
T Consensus 174 aryY~kr~~--------------------~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~ 232 (254)
T COG4105 174 ARYYLKRGA--------------------YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGA 232 (254)
T ss_pred HHHHHHhcC--------------------hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHh
Confidence 444444443 488899999999876653 23679999999999999999887654 3444
Q ss_pred C
Q psy11738 222 P 222 (323)
Q Consensus 222 ~ 222 (323)
+
T Consensus 233 N 233 (254)
T COG4105 233 N 233 (254)
T ss_pred c
Confidence 3
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.8e-06 Score=61.48 Aligned_cols=108 Identities=21% Similarity=0.188 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
+..++.-|...+..|+|++|++.|+......|...-.... ...++++.+. .++|++|+..+++-++++|
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qA--------qL~l~yayy~---~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQA--------QLDLAYAYYK---QGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHH--------HHHHHHHHHH---ccCHHHHHHHHHHHHHhCC
Confidence 3445556666666666666666666665555554432221 1123333343 4556666666666666665
Q ss_pred cchh---hhhHHHHHHHHHhcC---------------HHHHHHHHHHhhCCCChhHHH
Q psy11738 272 LFYS---QNVLMLGKTYMRLEN---------------YEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 272 ~~~~---~~~~~lg~~y~~~g~---------------~~~A~~~~~~al~~~~~~~~~ 311 (323)
+. + -+++..|.++..... ...|+..|++.+..-|+++-.
T Consensus 79 ~h-p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 79 TH-PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred CC-CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 54 2 245666666666655 678999999999988886643
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-06 Score=74.97 Aligned_cols=178 Identities=11% Similarity=-0.053 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHH
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEA 176 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 176 (323)
...|.-|...|.++ +|+.||.+++.++|.|+..+.+.+..|+.+..+ ..|
T Consensus 101 KE~GN~yFKQgKy~----------EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F--------------------A~A 150 (536)
T KOG4648|consen 101 KERGNTYFKQGKYE----------EAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF--------------------AQA 150 (536)
T ss_pred HHhhhhhhhccchh----------HHHHHhhhhhccCCCCccchhhHHHHHHHHHHH--------------------HHH
Confidence 33455555555555 555555555555555555555555555554322 555
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHh---------
Q psy11738 177 LKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAI--------- 247 (323)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~--------- 247 (323)
...+..|+.++..+ ..+|...|.+-..+|...+|.+-++.++.+.|++.+.+...-.-.....+.++..-
T Consensus 151 E~DC~~AiaLd~~Y-~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q 229 (536)
T KOG4648|consen 151 EEDCEAAIALDKLY-VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQ 229 (536)
T ss_pred HHhHHHHHHhhHHH-HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCcccc
Confidence 55555555555553 45555555555555555555555555555555543322100000000111111000
Q ss_pred ------------hccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 248 ------------FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 248 ------------~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
++....+.++-++.++.+-+..+-++ .....+ ++.|.+..+++.++....+++.++|.
T Consensus 230 ~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~-~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s 299 (536)
T KOG4648|consen 230 GMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDS-NQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPT 299 (536)
T ss_pred chhhhccccCcchhhhhhhccccceeEeeccccccCcc-ccCccc-HHHHHHHhhcchhHHHHHHhcCCCCC
Confidence 00001234555555555444333332 222233 78888999999999888888777665
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.2e-06 Score=65.23 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=89.3
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
...+..+-..|+.+|..|+|++|...|..+ .-|.... -..+.+|.+.+-. ..+++.++.|+..+.+++++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa------~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAA------LIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHH------HHHhhhHHHHHHHHHhhHhc
Confidence 344556777899999999999999988876 2333322 1223344443321 23466789999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
+|.+..++...+.+|..+..++ +|++-|++.++++|..-.+...+.++
T Consensus 164 ~pty~kAl~RRAeayek~ek~e----------ealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYE----------EALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHH----------HHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999999988888 89999999999999987766655543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-05 Score=66.56 Aligned_cols=97 Identities=27% Similarity=0.275 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 172 SYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
+|.+|...|..-++.-|+.. +.++|.||.+++.+|+++.|...|..+.+-.|++
T Consensus 156 dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------------------ 211 (262)
T COG1729 156 DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------------------ 211 (262)
T ss_pred CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------------------
Confidence 45999999999999888752 3678999999999999999999888887765543
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHH
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLL 314 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l 314 (323)
|.- ++.++-||.+...+|+.++|...|.++++.-|...+...-
T Consensus 212 ---------------------~KA-pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 212 ---------------------PKA-PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred ---------------------CCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 334 5789999999999999999999999999999888765443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.5e-06 Score=61.30 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=88.0
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCC---CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYK---EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~---~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
++..+...++..|...+..|+|++|+..++.+ +.| -...+.+.++.+|+..++ +++|+..++
T Consensus 5 ~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~-------------y~~A~a~~~ 71 (142)
T PF13512_consen 5 VPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD-------------YEEAIAAYD 71 (142)
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC-------------HHHHHHHHH
Confidence 34456678999999999999999999999987 344 346778889999998885 466999999
Q ss_pred hhccCCCCcHH---HHHHHHHHHHHhhc--c---cchHHHHHhHHHHHHHHHHHHccCCCChhH
Q psy11738 84 NALPQHEDHYA---IHKWLAVILNEKAT--L---EGTKARIQQLETIKHHMNKAIELKPDDSTT 139 (323)
Q Consensus 84 ~al~~~p~~~~---~~~~~~~~~~~~~~--~---~~~~~~~~~~~~a~~~~~~al~l~p~~~~~ 139 (323)
+-++++|.++. +++..|.++..... + .+...-......|...|.+.+..-|++.-+
T Consensus 72 rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 72 RFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 99999999887 55666777766653 0 011111223447788899999999987544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-05 Score=67.14 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
.|..+.-+...|++. .|...|..-++.-|+. ++++|+||.+++.+|++
T Consensus 144 ~Y~~A~~~~ksgdy~----------~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y------------------- 194 (262)
T COG1729 144 LYNAALDLYKSGDYA----------EAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY------------------- 194 (262)
T ss_pred HHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc-------------------
Confidence 688888888889888 7888899999998874 68899999999999876
Q ss_pred HHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 173 YEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|...|..+.+-.|+.. +++++.||.|..++|+.++|-..|+++++.-|....+
T Consensus 195 -~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 195 -EDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred -hHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999877752 4789999999999999999999999999998887644
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.1e-07 Score=50.04 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHH
Q psy11738 179 YFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 213 (323)
Q Consensus 179 ~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~ 213 (323)
+|+++++++|++ +.+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 478999999998 7999999999999999999863
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.3e-06 Score=66.23 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|..|+.+|.+++.++|.. +..+.+.+.|+.++.+++.+..-.++|+.++|+...
T Consensus 24 k~y~~ai~~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk 79 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK 79 (284)
T ss_pred hhhchHHHHHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH
Confidence 45699999999999999996 678888999999988888888777777777666543
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.4e-06 Score=67.79 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=76.8
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.|+.+|.+||.++|..+..+-+.+.+|+++.++ +.+....+++++++|+. ..+++.+|.
T Consensus 28 ~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~--------------------~~v~~dcrralql~~N~-vk~h~flg~ 86 (284)
T KOG4642|consen 28 DAIDCYSRAICINPTVASYYTNRALCHLKLKHW--------------------EPVEEDCRRALQLDPNL-VKAHYFLGQ 86 (284)
T ss_pred hHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh--------------------hhhhhhHHHHHhcChHH-HHHHHHHHH
Confidence 788899999999999999999999999998777 99999999999999996 799999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
+......|++|+.++.+|.++...
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHhhccccHHHHHHHHHHHHHhc
Confidence 999999999999999999766433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00022 Score=59.12 Aligned_cols=145 Identities=19% Similarity=0.275 Sum_probs=108.2
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
+..+|.-|....+.|++ ++|++.|++....+|..+ ..+...++.++++.+++++|+..
T Consensus 34 ~~~LY~~g~~~L~~gn~--------------------~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~ 93 (254)
T COG4105 34 ASELYNEGLTELQKGNY--------------------EEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAY 93 (254)
T ss_pred HHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHH
Confidence 34567777666666554 999999999999988852 36799999999999999999999
Q ss_pred HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc----CCCCcHHHHHHHHHHHHhhCCcchhh--------------
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT----LPTSSYEEALKYFLEAEKQHPLFYSQ-------------- 276 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~~~~Al~~~~~a~~~~p~~~~~-------------- 276 (323)
.++-+.+.|+++..-+. .|.+++.. +++. .+..--.+|+..|+..+...|+. .-
T Consensus 94 ~drFi~lyP~~~n~dY~------~YlkgLs~-~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS-~Ya~dA~~~i~~~~d~ 165 (254)
T COG4105 94 IDRFIRLYPTHPNADYA------YYLKGLSY-FFQIDDVTRDQSAARAAFAAFKELVQRYPNS-RYAPDAKARIVKLNDA 165 (254)
T ss_pred HHHHHHhCCCCCChhHH------HHHHHHHH-hccCCccccCHHHHHHHHHHHHHHHHHCCCC-cchhhHHHHHHHHHHH
Confidence 99999999999865442 11222221 1111 12233578889999999999963 21
Q ss_pred ---hhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 277 ---NVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 277 ---~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
--...|..|.+.|.+..|+..++..++-.|...
T Consensus 166 LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 166 LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc
Confidence 124468999999999999999999999877743
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.1e-05 Score=54.87 Aligned_cols=94 Identities=21% Similarity=0.109 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHH
Q psy11738 98 WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEAL 177 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (323)
..|+.+...|+++ .|++.|.+++.+-|..+.+|.+.+..+.-.|+. ++|+
T Consensus 48 l~~valaE~g~Ld----------~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~--------------------e~AL 97 (175)
T KOG4555|consen 48 LKAIALAEAGDLD----------GALELFGQALCLAPERASAYNNRAQALRLQGDD--------------------EEAL 97 (175)
T ss_pred HHHHHHHhccchH----------HHHHHHHHHHHhcccchHhhccHHHHHHHcCCh--------------------HHHH
Confidence 3467777778877 899999999999999999999999998887766 9999
Q ss_pred HHHHHHHhcCCCch---hHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 178 KYFLEAEKQHPLFY---SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 178 ~~~~~al~~~p~~~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
..+.+++++..+.. ..++...|.+|+..|+-+.|..-|+.|-.+
T Consensus 98 dDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 98 DDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 99999999965531 256888999999999999999999999776
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00043 Score=59.88 Aligned_cols=237 Identities=12% Similarity=0.055 Sum_probs=148.3
Q ss_pred hhccHHHHHHHH----HhCCCCC----CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH----
Q psy11738 26 EEQQFEEVNKML----ESSEYKE----DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY---- 93 (323)
Q Consensus 26 ~~~~~~~A~~~~----~~~~~~~----~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---- 93 (323)
.+|.|.+++..- ..+.+-+ -.+++.++++.+..+. .+.+++.+.+..+.+-...+
T Consensus 55 ~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~-------------~f~kt~~y~k~~l~lpgt~~~~~~ 121 (518)
T KOG1941|consen 55 EMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC-------------EFHKTISYCKTCLGLPGTRAGQLG 121 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhhHHHHHHHHhcCCCCCccccc
Confidence 467777765432 2221111 2344555666554444 56778999999888754433
Q ss_pred -HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh------HHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 94 -AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST------TLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~------~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.++.-+|..+..++.+. ++.+.|++|++...++.+ .+..||.+|-...++
T Consensus 122 gq~~l~~~~Ahlgls~fq----------~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~------------- 178 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQ----------KALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY------------- 178 (518)
T ss_pred chhhhhHHHHhhhHHHHH----------HHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh-------------
Confidence 34455666676677777 888899999998765544 477788888777655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCc---------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchh
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLF---------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMP 237 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 237 (323)
++|+-+..+|.++.... ...+++.++..|+.+|+.-.|.++++++.++.-..-+.-....
T Consensus 179 -------~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ar---- 247 (518)
T KOG1941|consen 179 -------EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQAR---- 247 (518)
T ss_pred -------hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHH----
Confidence 99999999998873221 1256888999999999999999999999887433221111000
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-----hhhhHHHHHHHHHhcCHHH-----HHHHHHHhhCCCCh
Q psy11738 238 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQ-----AAYYLEMTKNYPAV 307 (323)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-----~~~~~~lg~~y~~~g~~~~-----A~~~~~~al~~~~~ 307 (323)
...-++..+. ..|+.+.|..-|+.|..+..... ..++...+.+.....-... |++.-++++++...
T Consensus 248 -c~~~~aDIyR---~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 248 -CLLCFADIYR---SRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred -HHHHHHHHHH---hcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 0011222221 26778888888888887643210 1234444555554444444 77777777777666
Q ss_pred hHHHHH
Q psy11738 308 QEATKL 313 (323)
Q Consensus 308 ~~~~~~ 313 (323)
-.++-.
T Consensus 324 IG~K~~ 329 (518)
T KOG1941|consen 324 IGAKLS 329 (518)
T ss_pred hhhhHH
Confidence 555433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.3e-06 Score=46.77 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 679999999999999999999999999999863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.7e-06 Score=46.31 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
.+|+.+|.+|..+|++++|+.+|+++++++|+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0079 Score=52.85 Aligned_cols=241 Identities=14% Similarity=0.075 Sum_probs=147.4
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIH 96 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 96 (323)
+..+..-+..|+|++|...|+.+ .+|+--.. .|-..|.. ..+.|..+-|++|.+.+.+..|.-+=+.
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~dPEtRll--GLRgLyle----------Aqr~GareaAr~yAe~Aa~~Ap~l~WA~ 191 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLDDPETRLL--GLRGLYLE----------AQRLGAREAARHYAERAAEKAPQLPWAA 191 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhcChHHHHH--hHHHHHHH----------HHhcccHHHHHHHHHHHHhhccCCchHH
Confidence 44666667789999999999987 56554221 22222221 1235567889999999999999877655
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc---cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE---LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~---l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
...-......|++.+ |++..+.... +.|+-. -...+.++-. +..+.+ ..+-
T Consensus 192 ~AtLe~r~~~gdWd~----------AlkLvd~~~~~~vie~~~a--eR~rAvLLtA---------kA~s~l-----dadp 245 (531)
T COG3898 192 RATLEARCAAGDWDG----------ALKLVDAQRAAKVIEKDVA--ERSRAVLLTA---------KAMSLL-----DADP 245 (531)
T ss_pred HHHHHHHHhcCChHH----------HHHHHHHHHHHHhhchhhH--HHHHHHHHHH---------HHHHHh-----cCCh
Confidence 555555666788884 4444333222 222211 1111111100 000000 1123
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
..|...-..++++.|+. ..+-..-+..|.+.|+..++-..++.+.+..|+-.....+.. ...
T Consensus 246 ~~Ar~~A~~a~KL~pdl-vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~-----------------ar~ 307 (531)
T COG3898 246 ASARDDALEANKLAPDL-VPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR-----------------ARS 307 (531)
T ss_pred HHHHHHHHHHhhcCCcc-chHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH-----------------hcC
Confidence 77888889999999997 688888999999999999999999999999998643322111 001
Q ss_pred C-cHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHH
Q psy11738 254 S-SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLE 315 (323)
Q Consensus 254 ~-~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~ 315 (323)
| .-..-++-.++...+.|++ ..+.+..+..-+.-|++..|..--+.+....|..-+--+|-
T Consensus 308 gdta~dRlkRa~~L~slk~nn-aes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlA 369 (531)
T COG3898 308 GDTALDRLKRAKKLESLKPNN-AESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLA 369 (531)
T ss_pred CCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHH
Confidence 1 1112223333444556666 56667777777777777777777777777766655444433
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00017 Score=53.26 Aligned_cols=90 Identities=17% Similarity=0.087 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
+.+.|++.|.+++.+-|.. +.+|.+.+..++-+|+.++|++-+++|+++......+.+... ..+.+.+-+
T Consensus 58 ~Ld~AlE~F~qal~l~P~r-aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~-----vQRg~lyRl---- 127 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPER-ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF-----VQRGLLYRL---- 127 (175)
T ss_pred chHHHHHHHHHHHHhcccc-hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH-----HHHHHHHHH----
Confidence 3499999999999999998 799999999999999999999999999998644433322211 122222111
Q ss_pred CCCcHHHHHHHHHHHHhhCCc
Q psy11738 252 PTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~ 272 (323)
.|+-+.|...|..+-.+...
T Consensus 128 -~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 -LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred -hCchHHHHHhHHHHHHhCCH
Confidence 34556666666666655443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.5e-06 Score=45.82 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
.+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.7e-06 Score=46.00 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHH
Q psy11738 263 FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 295 (323)
Q Consensus 263 ~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~ 295 (323)
|+++++++|++ +.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNN-AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999 899999999999999999986
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00053 Score=53.93 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
+.+.+-..+.+.+-|++ ...+.||..+.+.|++.+|..+|+++++--=-+.. ....+++.+.+. .
T Consensus 73 ~R~~Rea~~~~~~ApTv--qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~----------a~lLglA~Aqfa---~ 137 (251)
T COG4700 73 ERHLREATEELAIAPTV--QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA----------AMLLGLAQAQFA---I 137 (251)
T ss_pred hHHHHHHHHHHhhchhH--HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH----------HHHHHHHHHHHh---h
Confidence 44444555556666763 66777888888888888888888887764111111 111233444443 4
Q ss_pred CcHHHHHHHHHHHHhhCCcch-hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 254 SSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
+++..|...+++..+.+|... ++....+|.+|...|++..|...|+.++...|..++
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHH
Confidence 667777777777777776531 245666777777777777777777777777776554
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.002 Score=59.74 Aligned_cols=245 Identities=13% Similarity=0.042 Sum_probs=156.3
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC-CCCCCHH------------HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS-EYKEDVE------------IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~------------~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
...=|+.-+...+++.|+.++..+ .-|.+.. -+++--++++...++ ++..|-++.....|+
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~vYd 501 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHHHH
Confidence 344455555667777777777765 3444433 011222222222222 344667788889999
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC--CChhHHHHHhhHHH-HhcCCcHHHHHH
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP--DDSTTLFMLGMWCF-EITDMPWYQRKI 160 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p--~~~~~~~~lg~~~~-~~~~~~~~~~~~ 160 (323)
+.+++.--.|....++|..+..-.-++ ++.+.|++.+.+-| .-.+.|...-.-+. +-|
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfe----------esFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg--------- 562 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFE----------ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG--------- 562 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHH----------HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc---------
Confidence 999998889999999998887766666 78888999999875 33444443222111 111
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHH
Q psy11738 161 ANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS-QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWY 239 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 239 (323)
..+-+.|...|++|++.-|...+ ..++..+..-.+.|--..|++.|++|.+.-+... .+ .+..+
T Consensus 563 ---------g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~---~l---~myni 627 (835)
T KOG2047|consen 563 ---------GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQ---RL---DMYNI 627 (835)
T ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHH---HH---HHHHH
Confidence 12349999999999998765323 4466667777888999999999999876532211 11 11122
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchh-hhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CCh
Q psy11738 240 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS-QNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAV 307 (323)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~-~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~ 307 (323)
..+-+...+|- ......|++|++.-|+... ..+...+..-..+|..+.|...|.-+-++ +|.
T Consensus 628 ~I~kaae~yGv------~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 628 YIKKAAEIYGV------PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred HHHHHHHHhCC------cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence 22223333442 1335677888888776522 23566688888999999999999888888 777
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0079 Score=57.93 Aligned_cols=235 Identities=12% Similarity=0.030 Sum_probs=129.9
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 93 (323)
....-.-..+..++|.+|+..+.+. +.|+...+...-|-+..++|. .++|..+++..-...|++.
T Consensus 11 rr~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk-------------~~ea~~~Le~~~~~~~~D~ 77 (932)
T KOG2053|consen 11 RRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK-------------GDEALKLLEALYGLKGTDD 77 (932)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC-------------chhHHHHHhhhccCCCCch
Confidence 3344555566778888888877776 577777766666666666664 3557777777777777777
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
.....+-.+|..+++++ ++..+|+++...+|+ .+..+.+=.+|.+.+++...+
T Consensus 78 ~tLq~l~~~y~d~~~~d----------~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ---------------- 130 (932)
T KOG2053|consen 78 LTLQFLQNVYRDLGKLD----------EAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQ---------------- 130 (932)
T ss_pred HHHHHHHHHHHHHhhhh----------HHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH----------------
Confidence 77777778888888777 777888888888887 444444444455544331111
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHH---------HHHHHHHHHhCCC-CCCchhhhhhhcchhHHHHHH
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYE---------QAAYYLEMTKNYP-VKQDKDQCFEITDMPWYQRKI 243 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~---------~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 243 (323)
.-|++.|+ .-|.+.-.-|..++.+.-.+..++ -|...+++.+... +....... ..+ ..+
T Consensus 131 kaa~~LyK----~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~------~Ly-l~i 199 (932)
T KOG2053|consen 131 KAALQLYK----NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI------ILY-LLI 199 (932)
T ss_pred HHHHHHHH----hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH------HHH-HHH
Confidence 33444443 344432122333333333333322 2344555555544 21111111 011 001
Q ss_pred HHHhhccCCCCcHHHHHHHHH-HHHhhCCcchhhhh-HHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 244 ANAIFDTLPTSSYEEALKYFL-EAEKQHPLFYSQNV-LMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 244 a~~~~~~~~~~~~~~Al~~~~-~a~~~~p~~~~~~~-~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
+ . ..+++++|+..+. .-.+..+.. .... ..-+..+..++++++-.+...++++-.+++
T Consensus 200 L---~---~~~k~~eal~~l~~~la~~l~~~-~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 200 L---E---LQGKYQEALEFLAITLAEKLTSA-NLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred H---H---hcccHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 1 0 1567999998883 333333332 2222 233455566777777777777777666664
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.6e-05 Score=46.82 Aligned_cols=43 Identities=14% Similarity=0.053 Sum_probs=38.4
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
|.++..+|.++...|++ ++|++.|+++++.+|++ +.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~--------------------~~A~~~~~~~l~~~P~~-~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQP--------------------DEAERLLRRALALDPDD-PEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHCcCC-HHHHHHhhh
Confidence 46788999999998766 99999999999999998 699998875
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.4e-05 Score=44.96 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
.+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 568999999999999999999999999998863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.89 E-value=2e-05 Score=47.28 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
|.++..+|..|...|+++ +|++.|+++++.+|+|+.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~----------~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPD----------EAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457889999999999999 8999999999999999999999885
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.7e-05 Score=70.80 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
-+.|+.|+..|.+|++++|+++..+...+..+...+++. .|..-+.+||+++|....+|+..|.++...+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~----------~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFG----------GALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhh----------hHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 456899999999999999999998888888888888777 7888899999999999999999999988876
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
.+ .+|+..|++...+.|+. +.+...+-.|
T Consensus 87 ~~--------------------~~A~~~l~~~~~l~Pnd-~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EF--------------------KKALLDLEKVKKLAPND-PDATRKIDEC 115 (476)
T ss_pred HH--------------------HHHHHHHHHhhhcCcCc-HHHHHHHHHH
Confidence 44 99999999999999997 5777766666
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=60.08 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=78.8
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS----------EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
+.+-++|+.+|..|+|.+|...|..+ +.|..++..
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~----------------------------------- 223 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWL----------------------------------- 223 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHH-----------------------------------
Confidence 44678999999999999988777653 244443321
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
+++..+...+.+++.|+...+++. +.+++....+..+|.|..+++..|..+...=+.
T Consensus 224 --eLdk~~tpLllNy~QC~L~~~e~y----------evleh~seiL~~~~~nvKA~frRakAhaa~Wn~----------- 280 (329)
T KOG0545|consen 224 --ELDKMITPLLLNYCQCLLKKEEYY----------EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNE----------- 280 (329)
T ss_pred --HHHHhhhHHHHhHHHHHhhHHHHH----------HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCH-----------
Confidence 111223334567777777777776 788888888999999999998888877655333
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
.+|...|.++++++|.-
T Consensus 281 ---------~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 281 ---------AEAKADLQKVLELDPSL 297 (329)
T ss_pred ---------HHHHHHHHHHHhcChhh
Confidence 88899999999998874
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0081 Score=60.52 Aligned_cols=190 Identities=14% Similarity=0.004 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhhcc-CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 74 LILSAYFLVYNALP-QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 74 ~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
..++|...+++||. +++.-.+=..++-.+|.++....+..+ .-.+.|++|-+... -...|..|..+|...+
T Consensus 1473 EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ee------sl~kVFeRAcqycd-~~~V~~~L~~iy~k~e- 1544 (1710)
T KOG1070|consen 1473 EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEE------SLKKVFERACQYCD-AYTVHLKLLGIYEKSE- 1544 (1710)
T ss_pred hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHH------HHHHHHHHHHHhcc-hHHHHHHHHHHHHHhh-
Confidence 45667888888774 445444433444444444444433222 33456666666542 2234444555555544
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
++++|.+.|+.-++...+. ..+|..+|..+++.++-++|...+++|++.-|... +.-.
T Consensus 1545 -------------------k~~~A~ell~~m~KKF~q~-~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e--Hv~~ 1602 (1710)
T KOG1070|consen 1545 -------------------KNDEADELLRLMLKKFGQT-RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE--HVEF 1602 (1710)
T ss_pred -------------------cchhHHHHHHHHHHHhcch-hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh--hHHH
Confidence 4499999999999987754 68899999999999999999999999999888732 1111
Q ss_pred hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
++. .|-.-|+ .|+-+.+...|.-.+..+|.- .+.|.-....-.+.|+.+-....|++++++
T Consensus 1603 Isk-------fAqLEFk---~GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1603 ISK-------FAQLEFK---YGDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHH-------HHHHHhh---cCCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 111 2222232 467778888999999999987 788988888888899999999999999877
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0011 Score=61.53 Aligned_cols=124 Identities=16% Similarity=0.157 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
...+.|.+.+....+..|+. +..++..|.++...|+.++|++.|++++.....-. .+..+++++.......
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s-~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-----Ql~~l~~~El~w~~~~--- 317 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNS-ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-----QLHHLCYFELAWCHMF--- 317 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-----hHHHHHHHHHHHHHHH---
Confidence 34588999999999999997 68888899999999999999999999985322222 2222333433333333
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH-------HHHHHHHHHhhCCC
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY-------EQAAYYLEMTKNYP 305 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~-------~~A~~~~~~al~~~ 305 (323)
..+|++|..+|.+..+.+....+...+..|-|+...|+. ++|.+.+.++-.+.
T Consensus 318 --~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 318 --QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred --HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 578999999999999988765445567789999999999 88888888876653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.01 Score=49.50 Aligned_cols=126 Identities=15% Similarity=-0.017 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
..+++-|....++...++.+. ....+|..+.....-.+ ....|.-.|+..-..-|-++.....++.++..++
T Consensus 150 ~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~gge------k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGE------KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccch------hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 445666777777777776432 33445555444333221 1124444566666656666666666777777665
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHH-HHHHHHhCCCCCCc
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA-YYLEMTKNYPVKQD 226 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~-~~~~~al~~~~~~~ 226 (323)
++ ++|...++.++..++++ ++++.++-.+-...|...++. .++.+....+|.++
T Consensus 222 ~~--------------------eeAe~lL~eaL~kd~~d-petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 222 RY--------------------EEAESLLEEALDKDAKD-PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CH--------------------HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 44 77777777777777776 577777777766777665543 34555555566654
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.018 Score=55.64 Aligned_cols=172 Identities=13% Similarity=0.031 Sum_probs=115.8
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|...-....+|-.+++.|++++|..+++.. ..+++..++--+-.+|..++ .+++|..+|++++..
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~-------------~~d~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG-------------KLDEAVHLYERANQK 106 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh-------------hhhHHHHHHHHHHhh
Confidence 344445577888999999999999888876 35567777777888887776 567899999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHH-hhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFML-GMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~l-g~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
+|+ -+..+.+-.+|.+.+.+. +-.+.--+..+..|+++...+.. ..+.+......-....+
T Consensus 107 ~P~-eell~~lFmayvR~~~yk----------~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i------- 168 (932)
T KOG2053|consen 107 YPS-EELLYHLFMAYVREKSYK----------KQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPI------- 168 (932)
T ss_pred CCc-HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccch-------
Confidence 998 777788888898888887 22233444556889888765544 44444333221111100
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 168 LPTSSYEEALKYFLEAEKQH-PLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
--.-|.+.+++.++.. +-....=....-.++..+|++++|.+.+..
T Consensus 169 ----~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 169 ----LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred ----hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 0155677777777766 222111123334677888999999998843
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00073 Score=57.95 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=118.7
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC-CCCcHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ-HEDHYA 94 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~ 94 (323)
-..+..++..|++.+|-....++ ..|.+.-++-.--.+++.+|+... ....+++.+-. +|+.|.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~-------------~k~ai~kIip~wn~dlp~ 173 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIG-------------KKNAIEKIIPKWNADLPC 173 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhh-------------hhhHHHHhccccCCCCcH
Confidence 33455566678888877666665 588887777777788899887765 47778888876 776644
Q ss_pred ---HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 95 ---IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 95 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
.+-.++..+...|-+. +|.+..+++++++|.+.-+.+.++.++...+.+
T Consensus 174 ~sYv~GmyaFgL~E~g~y~----------dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~------------------ 225 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYD----------DAEKQADRALQINRFDCWASHAKAHVLEMNGRH------------------ 225 (491)
T ss_pred HHHHHHHHHhhHHHhccch----------hHHHHHHhhccCCCcchHHHHHHHHHHHhcchh------------------
Confidence 4455677788888887 788889999999999999999999888776554
Q ss_pred CHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 172 SYEEALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
.++.++..+.-..-... ....|-.-+.++..-+.|+.|++.|.+-+
T Consensus 226 --Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 226 --KEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred --hhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 88888887765432221 12345667888899999999999998754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0036 Score=49.41 Aligned_cols=127 Identities=14% Similarity=0.064 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHH
Q psy11738 47 EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL-PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHH 125 (323)
Q Consensus 47 ~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 125 (323)
.-.+++|.+...+|+ +.||...|++++ -+..+++.....++......+++. .+...
T Consensus 90 qnr~rLa~al~elGr-------------~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A----------~a~~t 146 (251)
T COG4700 90 QNRYRLANALAELGR-------------YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA----------AAQQT 146 (251)
T ss_pred HHHHHHHHHHHHhhh-------------hhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH----------HHHHH
Confidence 345677777777774 455777777776 455666777777777777777777 66777
Q ss_pred HHHHHccCCC--ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy11738 126 MNKAIELKPD--DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 203 (323)
Q Consensus 126 ~~~al~l~p~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~ 203 (323)
+++..+.+|. .|+.+..+|+.+...|. +.+|...|+-++..-|+ +.+....+..+.
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~--------------------~a~Aesafe~a~~~ypg--~~ar~~Y~e~La 204 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGK--------------------YADAESAFEVAISYYPG--PQARIYYAEMLA 204 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCC--------------------chhHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 8888888775 66777777877776654 48888888888888887 367777788888
Q ss_pred HcCCHHHHHHHHHHH
Q psy11738 204 RLENYEQAAYYLEMT 218 (323)
Q Consensus 204 ~~g~~~~A~~~~~~a 218 (323)
.+|+.++|..-+...
T Consensus 205 ~qgr~~ea~aq~~~v 219 (251)
T COG4700 205 KQGRLREANAQYVAV 219 (251)
T ss_pred HhcchhHHHHHHHHH
Confidence 888877776655544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0046 Score=54.87 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhccC----CCCcHHHHHHHHHHHHH---hhcccchHHHHHhHHHHHHHHHH-HHccCCCChhHHHHHhh
Q psy11738 74 LILSAYFLVYNALPQ----HEDHYAIHKWLAVILNE---KATLEGTKARIQQLETIKHHMNK-AIELKPDDSTTLFMLGM 145 (323)
Q Consensus 74 ~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~-al~l~p~~~~~~~~lg~ 145 (323)
.|+.-+...+..-.+ -++.+.+...+|.++.. .|+.+ +|++.+.. .....+.+++.+-.+|+
T Consensus 156 dydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre----------~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 156 DYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE----------KALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred hHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH----------HHHHHHHHHHhccCCCChHHHHHHHH
Confidence 445567777766655 56678888899999988 44444 88888888 66667789999999999
Q ss_pred HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHH
Q psy11738 146 WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ 210 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~ 210 (323)
+|-..= .... .......++|+.+|.++.+++|+. ..-.|++.++...|...+
T Consensus 226 IyKD~~----~~s~-------~~d~~~ldkAi~~Y~kgFe~~~~~--Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 226 IYKDLF----LESN-------FTDRESLDKAIEWYRKGFEIEPDY--YSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHH----HHcC-------ccchHHHHHHHHHHHHHHcCCccc--cchHHHHHHHHHcCCccc
Confidence 986541 1100 001122499999999999999885 445566666666665433
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00036 Score=57.82 Aligned_cols=130 Identities=18% Similarity=0.101 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
+.|.-.+..+.+.++.+|...+.....||.+-++.||.+.|..+++..-+....-....... ...+..+...
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~-----~V~~n~a~i~--- 262 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI-----MVLMNSAFLH--- 262 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH-----HHHhhhhhhe---
Confidence 45688899999999998665456677899999999999999999996653321111110000 0011111112
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
...++|.+|...|.+++..+|.+ +.+-.+.|.|.+.+|+...|++..+.++.+.|..-
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~-~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPRN-AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred ecccchHHHHHHHhhccccCCCc-hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 23678999999999999999998 78889999999999999999999999999988743
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.017 Score=53.90 Aligned_cols=174 Identities=13% Similarity=0.114 Sum_probs=107.8
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC-C----CCC-----CHHHHHHHHHHHHHhcccCCCC-cHHHHHHHHHHHHHHHHh--
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS-E----YKE-----DVEIIWRLVRVKYNLATHSSSL-SDADKKQLILSAYFLVYN-- 84 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~-~----~~~-----~~~~~~~la~~y~~~~~~~~~~-~~~~~~~~~~~A~~~~~~-- 84 (323)
...|+.|++.|.|+.|-+.|+++ . ..+ +.-+.|.-..+-..++ ..... ..++-...++-.+..++.
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHHHHH
Confidence 45788889999999999999875 1 111 2222233333333344 11000 001111122233333333
Q ss_pred ----------hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc-cCCCCh-----hHHHHHhhHHH
Q psy11738 85 ----------ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE-LKPDDS-----TTLFMLGMWCF 148 (323)
Q Consensus 85 ----------al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~-l~p~~~-----~~~~~lg~~~~ 148 (323)
++..+|+|.+-+...-.++ .|+.. +.+..|..|++ .+|.-+ ..|..+|.+|-
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~----------~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAA----------EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhhhh--cCChH----------HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 3556777766554443333 33333 44555666654 567543 46888899888
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
..|++ +.|...|+++.+..=.. .+.+|..-|..-.+..+++.|+...++|..+...
T Consensus 399 ~~~~l--------------------~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 399 NNGDL--------------------DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN 457 (835)
T ss_pred hcCcH--------------------HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 88777 99999999999974322 2467999999999999999999999999887543
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0082 Score=60.50 Aligned_cols=207 Identities=13% Similarity=0.072 Sum_probs=142.4
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.|...--++.-....++.++.++|....+++ .++...+-...+-.+|.++-..... .+..+.-|++|.++++
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~--eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT--EESLKKVFERACQYCD--- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc--HHHHHHHHHHHHHhcc---
Confidence 3444444555556667789999999988887 2444444455666677777665553 3334444444544432
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
--..|..+..+|...+.+. +|.+.++..++..-+....|..+|..++++.+.
T Consensus 1529 -----~~~V~~~L~~iy~k~ek~~----------~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~------------- 1580 (1710)
T KOG1070|consen 1529 -----AYTVHLKLLGIYEKSEKND----------EADELLRLMLKKFGQTRKVWIMYADFLLRQNEA------------- 1580 (1710)
T ss_pred -----hHHHHHHHHHHHHHhhcch----------hHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH-------------
Confidence 2346778888888888777 888899999998888888999999988887654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
+.|...+.+|++--|. + ......-+..-.+.|+.+.+...|+-.+...|.-.+-+...+ +
T Consensus 1581 -------~aa~~lL~rAL~~lPk~eH-v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi-d--------- 1642 (1710)
T KOG1070|consen 1581 -------EAARELLKRALKSLPKQEH-VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI-D--------- 1642 (1710)
T ss_pred -------HHHHHHHHHHHhhcchhhh-HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH-H---------
Confidence 7788888888888777 3 344555677788899999999999999988887654322111 0
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
. ....+.-+.+...|++++.+.-
T Consensus 1643 -~---eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1643 -M---EIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred -H---HHccCCHHHHHHHHHHHHhcCC
Confidence 0 1224566677788888887653
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0023 Score=61.11 Aligned_cols=222 Identities=12% Similarity=0.037 Sum_probs=135.0
Q ss_pred HHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHH--HHHHHhhccCCCCcHHHHHHHHH
Q psy11738 24 LFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSA--YFLVYNALPQHEDHYAIHKWLAV 101 (323)
Q Consensus 24 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A--~~~~~~al~~~p~~~~~~~~~~~ 101 (323)
++-.|+.+.|+..++-+ ..-.+|-.+|..+....+.+.+ ..+.|+...| ...+.++.+ +|++.++ ..+.
T Consensus 738 yvtiG~MD~AfksI~~I---kS~~vW~nmA~McVkT~RLDVA---kVClGhm~~aRgaRAlR~a~q-~~~e~ea--kvAv 808 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI---KSDSVWDNMASMCVKTRRLDVA---KVCLGHMKNARGARALRRAQQ-NGEEDEA--KVAV 808 (1416)
T ss_pred EEEeccHHHHHHHHHHH---hhhHHHHHHHHHhhhhccccHH---HHhhhhhhhhhhHHHHHHHHh-CCcchhh--HHHH
Confidence 34469999998877764 2335677888888777765532 2234443333 223344433 3433333 4455
Q ss_pred HHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q psy11738 102 ILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 181 (323)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 181 (323)
+-..+|.++ +|...|.+.-+.| .|..+|+..|.+ ++|++.-+
T Consensus 809 LAieLgMlE----------eA~~lYr~ckR~D--------LlNKlyQs~g~w--------------------~eA~eiAE 850 (1416)
T KOG3617|consen 809 LAIELGMLE----------EALILYRQCKRYD--------LLNKLYQSQGMW--------------------SEAFEIAE 850 (1416)
T ss_pred HHHHHhhHH----------HHHHHHHHHHHHH--------HHHHHHHhcccH--------------------HHHHHHHh
Confidence 666677777 7777777766544 556666666544 77776665
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC----------CCCCCchhhhhhhc---chhHHHHHHHHHhh
Q psy11738 182 EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN----------YPVKQDKDQCFEIT---DMPWYQRKIANAIF 248 (323)
Q Consensus 182 ~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~----------~~~~~~~~~~~~~~---~~~~~~~~~a~~~~ 248 (323)
.--+++-. ..|++.+..+...++.+.|+++|+++=. -+|...+....... ...|.-.+ +
T Consensus 851 ~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY-----l 922 (1416)
T KOG3617|consen 851 TKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY-----L 922 (1416)
T ss_pred hccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH-----H
Confidence 54444433 4588888889999999999999988621 12222111111110 11121111 1
Q ss_pred ccCCCCcHHHHHHHHHHHHhhC---------------------CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQH---------------------PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~---------------------p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
-+.|..+.|+.+|..|.+-. ..+ ..+.+.||.-|...|+..+|+.+|.+|-.
T Consensus 923 --ES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd-~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 923 --ESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD-KAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred --hcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc-HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 13577888888888776432 123 34688999999999999999999888743
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.5e-05 Score=42.14 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
.+++.+|.+|..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999884
|
... |
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.2e-05 Score=67.30 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
+..|+..|.+||+++|+.+..+-+.+..+...+++ ..|+..+.+|++++|.. ..+|+..
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~--------------------~~Al~Da~kaie~dP~~-~K~Y~rr 78 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF--------------------GGALHDALKAIELDPTY-IKAYVRR 78 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeechh--------------------hhHHHHHHhhhhcCchh-hheeeec
Confidence 33899999999999999999888888888777665 99999999999999997 6999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
|.+++.++++.+|+..|+...++.|++...
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence 999999999999999999999999998754
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0062 Score=50.64 Aligned_cols=175 Identities=12% Similarity=0.042 Sum_probs=134.0
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
..|+...+-++.++|.|-.++...-.++..++..- .+-.++++..+.-+|.|...|+..-.+.-..|+.
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL---------~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~-- 128 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDL---------NKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDP-- 128 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCc--
Confidence 45899999999999999999888888887766443 2556889999999999999998877766666554
Q ss_pred HHHHHHHHhhcCCCCCCHH-HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 156 YQRKIANAIFDTLPTSSYE-EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
. .-++..+..+..+..++ .+|...--|....+.++.-+.+....++.|-.+..+....+-
T Consensus 129 ------------------s~rELef~~~~l~~DaKNY-HaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryf 189 (318)
T KOG0530|consen 129 ------------------SFRELEFTKLMLDDDAKNY-HAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYF 189 (318)
T ss_pred ------------------ccchHHHHHHHHhccccch-hhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeE
Confidence 3 55788889999998885 999999999999999999999999999998877765442111
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH-hc
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR-LE 289 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~-~g 289 (323)
-+... .+..+....+.-+.+.++.+.+.|++ ..+|..|.-++.. .|
T Consensus 190 vi~~~--------~~~~~~~~le~El~yt~~~I~~vP~N-eSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 190 VITNT--------KGVISKAELERELNYTKDKILLVPNN-ESAWNYLKGLLELDSG 236 (318)
T ss_pred EEEec--------cCCccHHHHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhccC
Confidence 11000 01111234566788899999999998 7889888888774 55
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00087 Score=57.35 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=86.3
Q ss_pred hcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHH
Q psy11738 185 KQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 264 (323)
Q Consensus 185 ~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~ 264 (323)
+-.|+..+..+---|+-|.+..+|..|+.+|.++++..-.+.+... .+|....|..++ .|+|..||..+.
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlna------vLY~NRAAa~~~----l~NyRs~l~Dcs 143 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNA------VLYTNRAAAQLY----LGNYRSALNDCS 143 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHH------HHHhhHHHHHHH----HHHHHHHHHHHH
Confidence 3455544566777899999999999999999999987544443211 112222222222 478999999999
Q ss_pred HHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 265 EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 265 ~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
+++.++|.+ ..+++.-|.|++.+.++.+|..+++..+.++.+.+
T Consensus 144 ~al~~~P~h-~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 144 AALKLKPTH-LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHhcCcch-hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999999998 79999999999999999999999998887765533
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0076 Score=57.71 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHH----------HHccCCC------
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNK----------AIELKPD------ 135 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------al~l~p~------ 135 (323)
.|++++|++..+.--++.-.+ .|++++..+...++.+ .|+++|+| .+.-+|.
T Consensus 839 ~g~w~eA~eiAE~~DRiHLr~--Tyy~yA~~Lear~Di~----------~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 839 QGMWSEAFEIAETKDRIHLRN--TYYNYAKYLEARRDIE----------AALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred cccHHHHHHHHhhccceehhh--hHHHHHHHHHhhccHH----------HHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 346667777777655554333 4667777777666655 34444433 2333443
Q ss_pred ----ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH---------------------hcCCCc
Q psy11738 136 ----DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAE---------------------KQHPLF 190 (323)
Q Consensus 136 ----~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---------------------~~~p~~ 190 (323)
++..|..-|.+.-..|+. +-|+.+|..|- .-..++
T Consensus 907 ~~~~d~~L~~WWgqYlES~Gem--------------------daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd 966 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEM--------------------DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD 966 (1416)
T ss_pred HhccchHHHHHHHHHHhcccch--------------------HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc
Confidence 344455555555555554 33333333322 113344
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 191 YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 191 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
..+-+.||..|...|++.+|+.+|.+|-.
T Consensus 967 -~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 967 -KAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred -HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 36788899999999999999999887744
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0014 Score=52.02 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
.+-+.++..+...|++++|+..++.++....+..... .....++..++. .+.+++|+..+.... ++.
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~--------l~~lRLArvq~q---~~k~D~AL~~L~t~~--~~~ 156 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKA--------LAALRLARVQLQ---QKKADAALKTLDTIK--EES 156 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHH--------HHHHHHHHHHHH---hhhHHHHHHHHhccc--ccc
Confidence 4466788899999999999999999987644432211 122245555554 688999998877544 332
Q ss_pred chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHH
Q psy11738 273 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLE 315 (323)
Q Consensus 273 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~ 315 (323)
..+......|.++..+|+.++|+..|+++++..+.+-..+++.
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lq 199 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQ 199 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHH
Confidence 2234467789999999999999999999999976666666543
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0033 Score=52.32 Aligned_cols=124 Identities=12% Similarity=0.050 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhccCC-CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHH----HccCC--CChhHHHHHhhH
Q psy11738 74 LILSAYFLVYNALPQH-EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKA----IELKP--DDSTTLFMLGMW 146 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a----l~l~p--~~~~~~~~lg~~ 146 (323)
.|.-++..+.+.++.+ |..+.....+|.+-...|+.+ .|..+|++. -+++. .+.....+.+.+
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k----------~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK----------TAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH----------HHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 4555788899999888 667777777888888888887 455556533 23332 223334444444
Q ss_pred HHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 147 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
|.-.+ +|.+|...|.+.++.||.+ +.+-.+-+.|....|+...|++..+.++...|...
T Consensus 262 ~lg~n--------------------n~a~a~r~~~~i~~~D~~~-~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 262 HLGQN--------------------NFAEAHRFFTEILRMDPRN-AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred eeccc--------------------chHHHHHHHhhccccCCCc-hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 44443 4599999999999999998 68899999999999999999999999999999875
Q ss_pred hh
Q psy11738 227 KD 228 (323)
Q Consensus 227 ~~ 228 (323)
..
T Consensus 321 l~ 322 (366)
T KOG2796|consen 321 LH 322 (366)
T ss_pred hh
Confidence 43
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=8.4e-05 Score=41.67 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+++.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46899999999999999999999999999874
|
... |
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0011 Score=56.76 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=72.3
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-----EYKE-DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFL 81 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-----~~~~-~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~ 81 (323)
+.+++.++++-++|+.+|..++|..|+..|.+. .+|+ ++..|...|-|-..+| +|+.|+..
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~-------------NyRs~l~D 141 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG-------------NYRSALND 141 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH-------------HHHHHHHH
Confidence 445567788889999999999999999999875 2443 3444455555555544 67889999
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhhccc
Q psy11738 82 VYNALPQHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 82 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
+.+++.++|.+..+++.=+.|+..+.++.
T Consensus 142 cs~al~~~P~h~Ka~~R~Akc~~eLe~~~ 170 (390)
T KOG0551|consen 142 CSAALKLKPTHLKAYIRGAKCLLELERFA 170 (390)
T ss_pred HHHHHhcCcchhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999877
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0082 Score=49.11 Aligned_cols=126 Identities=15% Similarity=0.145 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCCC---c--hhHHHHHHHHHHHHc-CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHh
Q psy11738 174 EEALKYFLEAEKQHPL---F--YSQNVLMLGKTYMRL-ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAI 247 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~---~--~~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 247 (323)
++|+.++.+++++-.+ + .+..+..+|.+|... .++++|+.+|+.|-......... ..++-+.. +.| .
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~---ssANKC~l--KvA--~ 162 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV---SSANKCLL--KVA--Q 162 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh---hhHHHHHH--HHH--H
Confidence 8999999999998433 1 123466789999766 99999999999997653333221 11111111 100 0
Q ss_pred hccCCCCcHHHHHHHHHHHHhhCCcchh------hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQHPLFYS------QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~p~~~~------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+. .-.++|.+|+..|++...-.-+++. ..++.-|.|++-..|.-.+...+++-.+++|.
T Consensus 163 ya-a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 163 YA-AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 10 0146899999999987766544311 23566789999999999998899998999887
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0056 Score=55.21 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=86.6
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC---CCCC---C-----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS---EYKE---D-----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAY 79 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~---~-----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~ 79 (323)
.+..+.++.+....+..|+|.+|..++... ..+. . .-++..+|-+.+.+| .+.-+.
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~-------------~y~~~~ 303 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLG-------------CYQASS 303 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehh-------------hHHHHH
Confidence 356678899999999999999999988875 3333 1 122345555555555 344456
Q ss_pred HHHHhhcc---------CCC---------CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHH
Q psy11738 80 FLVYNALP---------QHE---------DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLF 141 (323)
Q Consensus 80 ~~~~~al~---------~~p---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~ 141 (323)
.+|.+|++ +.| +.-+..|++|..|...|++. .|.++|.++...--.+|..|.
T Consensus 304 ~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl----------~AfqCf~~av~vfh~nPrlWL 373 (696)
T KOG2471|consen 304 VLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL----------LAFQCFQKAVHVFHRNPRLWL 373 (696)
T ss_pred HHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcH----------HHHHHHHHHHHHHhcCcHHHH
Confidence 66666653 111 24567899999999999999 899999999999999999999
Q ss_pred HHhhHHHHh
Q psy11738 142 MLGMWCFEI 150 (323)
Q Consensus 142 ~lg~~~~~~ 150 (323)
.|+.+|...
T Consensus 374 RlAEcCima 382 (696)
T KOG2471|consen 374 RLAECCIMA 382 (696)
T ss_pred HHHHHHHHH
Confidence 999998743
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.013 Score=45.12 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=70.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHH--------------HHHHHHhhccCCCCcHHHHHHHH
Q psy11738 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQ--------------RKIANAIFDTLPTSSYEEALKYF 263 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~Al~~~ 263 (323)
.|......|+.+.++..+++++.+-..+..... ....|.. ..++.... ..|++++|+..+
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~---~~~~W~~~~r~~l~~~~~~~~~~l~~~~~---~~~~~~~a~~~~ 85 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDL---DDEEWVEPERERLRELYLDALERLAEALL---EAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGG---TTSTTHHHHHHHHHHHHHHHHHHHHHHHH---HTT-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCHHHHHHHH
Confidence 355556778888888888888888544321110 0001111 11222222 268999999999
Q ss_pred HHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh-------hCCCChhHHHHHHHH
Q psy11738 264 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT-------KNYPAVQEATKLLEK 316 (323)
Q Consensus 264 ~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-------l~~~~~~~~~~~l~~ 316 (323)
.+++..+|-+ ...+..+-.+|...|+..+|+..|.+. +.+.|..+...+..+
T Consensus 86 ~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 86 QRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp HHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred HHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 9999999998 799999999999999999999888776 555677776665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0026 Score=57.50 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=89.8
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC---------------
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH--------------- 187 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------- 187 (323)
++...+|++++|+.+.++..|+.=... ...+|.++|+++++..
T Consensus 188 IkaA~eALei~pdCAdAYILLAEEeA~----------------------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 188 IKAAKEALEINPDCADAYILLAEEEAS----------------------TIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHHHHHHhhhhhhHHHhhccccccc----------------------CHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 467889999999999999998852111 1144444444444320
Q ss_pred --------CCc-hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC-chhhhhhhcchhHHHHHHHHHhhccCCCCcHH
Q psy11738 188 --------PLF-YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ-DKDQCFEITDMPWYQRKIANAIFDTLPTSSYE 257 (323)
Q Consensus 188 --------p~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (323)
+.+ ...+...||.|..++|+.++|++.++..++..|.. ...... .+..+++. .+.|.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Ire----------nLie~LLe---lq~Ya 312 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRE----------NLIEALLE---LQAYA 312 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHH----------HHHHHHHh---cCCHH
Confidence 000 12456779999999999999999999999987753 222111 12222222 56677
Q ss_pred HHHHHHHHHHhhC-CcchhhhhHHHHHHHHH-hcC---------------HHHHHHHHHHhhCCCCh
Q psy11738 258 EALKYFLEAEKQH-PLFYSQNVLMLGKTYMR-LEN---------------YEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 258 ~Al~~~~~a~~~~-p~~~~~~~~~lg~~y~~-~g~---------------~~~A~~~~~~al~~~~~ 307 (323)
++...+.+=-++. |.. +..++.-+..-.+ .++ -..|++.+.+|.+.+||
T Consensus 313 d~q~lL~kYdDi~lpkS-Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKS-ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHHHHHhccccCCch-HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 7766666532221 333 4444444332211 222 13478899999999998
|
The molecular function of this protein is uncertain. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0027 Score=45.72 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=74.8
Q ss_pred hhhHHHhhccHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS--EYKED---VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYA 94 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 94 (323)
+|..++..|++-+|+.+++.. .++++ +-.+..-|.++..++....+ ++.+...+.-|++.+.+++.+.|..+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten--~d~k~~yLl~sve~~s~a~~Lsp~~A~ 79 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTEN--PDVKFRYLLGSVECFSRAVELSPDSAH 79 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccC--chHHHHHHHHhHHHHHHHhccChhHHH
Confidence 577889999999999999986 33333 36677788888888776554 677888899999999999999999876
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL 132 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l 132 (323)
..+.+|.-++...-|. ++....++++.+
T Consensus 80 ~L~~la~~l~s~~~Yk----------k~v~kak~~Lsv 107 (111)
T PF04781_consen 80 SLFELASQLGSVKYYK----------KAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHhhhHHHHH----------HHHHHHHHHhcc
Confidence 6666665544333333 555566666654
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0064 Score=52.36 Aligned_cols=47 Identities=11% Similarity=-0.042 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
|-|++|.+.-+++++++|.+ ..+.-..++++...|+++++.++..+.
T Consensus 189 g~y~dAEk~A~ralqiN~~D-~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFD-CWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred ccchhHHHHHHhhccCCCcc-hHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 44566666666666666665 455555666666666666666665543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0027 Score=58.94 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC----ChhHHHHHhhHHHH
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD----DSTTLFMLGMWCFE 149 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~----~~~~~~~lg~~~~~ 149 (323)
..+.|...+.......|+.+-..+..|.++...|+.+ +|++.|++++..... +...++.+|.++..
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~----------~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLE----------EAIESFERAIESQSEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHH----------HHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence 4577899999999999999988899999999999998 888999988854433 33457778888877
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCH-------HHHHHHHHHHhCCC
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY-------EQAAYYLEMTKNYP 222 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~-------~~A~~~~~~al~~~ 222 (323)
+.+| ++|..+|.+..+.+.-..+...+..|-|+...|+. ++|.+++.++-.+-
T Consensus 318 ~~~w--------------------~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 318 QHDW--------------------EEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HchH--------------------HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 7655 99999999999975543334466679999999999 88999998886653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0046 Score=52.39 Aligned_cols=122 Identities=14% Similarity=0.090 Sum_probs=85.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh-cchhHHHHHHHHHh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI-TDMPWYQRKIANAI 247 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~~~a~~~ 247 (323)
+.+++.+|...|..++...|++ ..+...|+.||...|+.+.|...+...-.-.... . ...+ ..+....
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~--~~~l~a~i~ll~------- 214 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-A--AHGLQAQIELLE------- 214 (304)
T ss_pred hccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-H--HHHHHHHHHHHH-------
Confidence 4466799999999999999998 7999999999999999999999887643221111 1 0000 0000000
Q ss_pred hccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.-....+ +..+.+.+..+|++ ...-+.+|..|...|+.++|.+.+-..+..+-.
T Consensus 215 -qaa~~~~----~~~l~~~~aadPdd-~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 215 -QAAATPE----IQDLQRRLAADPDD-VEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred -HHhcCCC----HHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 0000111 34556667779988 788999999999999999999998777766433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.017 Score=49.11 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=101.6
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
..+..+.++..++..|++.+|...+..+ ..|++.++...++++|...|+.. .|...+. ..|
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e-------------~A~~iL~----~lP 195 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVE-------------AAQAILA----ALP 195 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChH-------------HHHHHHH----hCc
Confidence 4455678888899999999999999887 58888999999999999988643 2444443 333
Q ss_pred CcHHHHHHHH-----HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 91 DHYAIHKWLA-----VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 91 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
.+...-.+.+ ..+........ ...+.+.+..+|+|..+.+.++..+...|+.
T Consensus 196 ~~~~~~~~~~l~a~i~ll~qaa~~~~-----------~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~------------ 252 (304)
T COG3118 196 LQAQDKAAHGLQAQIELLEQAAATPE-----------IQDLQRRLAADPDDVEAALALADQLHLVGRN------------ 252 (304)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH------------
Confidence 3332222222 11111121111 1347788899999999999999988887655
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11738 166 DTLPTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLE 216 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~ 216 (323)
+.|+.++-..++.+-++. ..+...+-.++...|.-+.+...++
T Consensus 253 --------e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 253 --------EAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred --------HHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999988888754421 2445555555555554333333333
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0069 Score=49.91 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
.++++|+..|.-|+-. +|...+..++.++.+|+.+|+.+....++++|+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~------------------------ 146 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE------------------------ 146 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH------------------------
Confidence 3568888888777643 2222245678889999999997766666655543
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCC-----cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHh
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHP-----LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKS 319 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p-----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~ 319 (323)
.|.+++.... -+.....+.+|..+.+.|++++|..+|.+++.....+.-..++..|..
T Consensus 147 -----------------~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 147 -----------------FYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD 209 (214)
T ss_pred -----------------HHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 3444443321 111356889999999999999999999999988666554455555543
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0023 Score=52.65 Aligned_cols=112 Identities=14% Similarity=0.064 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhC--------CCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHH
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKN--------YPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 264 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~ 264 (323)
.++-.-|+-+++.|+|++|...|+.|+. --|.+++.....-.....+. ..+-+ ....++|-++++++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLll-Ny~QC---~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLL-NYCQC---LLKKEEYYEVLEHCS 254 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHH-hHHHH---HhhHHHHHHHHHHHH
Confidence 5566778888999999999999988863 24554443221110010000 00111 123678999999999
Q ss_pred HHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 265 EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 265 ~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
.++..+|++ ..++|..|.++...=+.++|...|.++|+++|.-.
T Consensus 255 eiL~~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 255 EILRHHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHhcCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 999999999 89999999999999999999999999999999843
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0052 Score=53.09 Aligned_cols=127 Identities=10% Similarity=0.021 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
+.+..+.|...|++|.+..+.+..+|...|.+-...++-. ..|...|+++++.-|.+...|......+...
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~---------~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDP---------KRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-H---------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 3445788999999999777777888887777755544333 1588999999999999999999888888887
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++. +.|...|++++..-|... ...|......-.+.|+.+...+..+++....|.+.
T Consensus 84 ~d~--------------------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 84 NDI--------------------NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp T-H--------------------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred CcH--------------------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 765 999999999999866642 24677778888899999999999999998887754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0091 Score=54.15 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC--------------
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD-------------- 136 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~-------------- 136 (323)
+..+.+.-+....+|++++|+.++++..++.-- ...+. ++.++|+++++.....
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEe-----A~Ti~-------Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEE-----ASTIV-------EAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc-----ccCHH-------HHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 445567779999999999999999876655311 11111 3444455554432211
Q ss_pred -----------hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHH
Q psy11738 137 -----------STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-FYSQNVLMLGKTYMR 204 (323)
Q Consensus 137 -----------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~y~~ 204 (323)
.-+...+|.+.... |+.++|++.|+..++..|. +...++.+|..++..
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarkl--------------------Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe 307 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKL--------------------GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE 307 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHh--------------------CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh
Confidence 11222333333333 4559999999999998876 234689999999999
Q ss_pred cCCHHHHHHHHHHHhCCC-CCCchhhhhhhcchhHHHHHHHHH--h---------hccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 205 LENYEQAAYYLEMTKNYP-VKQDKDQCFEITDMPWYQRKIANA--I---------FDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~a~~--~---------~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
++.|.++...+.+--++. |++... +|...+..+ + ........-..|++...+|++.+|.
T Consensus 308 lq~Yad~q~lL~kYdDi~lpkSAti---------~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 308 LQAYADVQALLAKYDDISLPKSATI---------CYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred cCCHHHHHHHHHHhccccCCchHHH---------HHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 999999999988743221 222211 121111100 0 0000011124578999999999998
Q ss_pred chhhhhHHH------HHHHHHhcCHHHHHHHHHHhh
Q psy11738 273 FYSQNVLML------GKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 273 ~~~~~~~~l------g~~y~~~g~~~~A~~~~~~al 302 (323)
. +..+..+ =.-+.+.|| .||+.|---.+
T Consensus 379 V-p~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL 412 (539)
T PF04184_consen 379 V-PKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHL 412 (539)
T ss_pred C-chhhhccCCCCCChHHhcCCCc-HHHHHHHHHHH
Confidence 7 4422211 112344554 66666544433
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.057 Score=46.60 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=83.2
Q ss_pred HhhccHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHH-HHHHHHHHHHhhccC-------CCCcH
Q psy11738 25 FEEQQFEEVNKMLESSE---YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQ-LILSAYFLVYNALPQ-------HEDHY 93 (323)
Q Consensus 25 ~~~~~~~~A~~~~~~~~---~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~-------~p~~~ 93 (323)
..+|+++-|..++.++. ...+++....+++++++.|...-. .+ .++.|..++++|+++ ++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~------~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~ 77 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS------KKDKYEEAVKWLQRAYDILEKPGKMDKLSP 77 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH------cCCChHHHHHHHHHHHHHHHhhhhccccCC
Confidence 46799999999999983 256778888999999999964322 22 444555555555444 23333
Q ss_pred HH-------HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 94 AI-------HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 94 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
+. +..++.++...+..+ ...++......+-...|+.+..+...=.++...++.+.+.+.+-..+..
T Consensus 78 ~~~elr~~iL~~La~~~l~~~~~~-------~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 78 DGSELRLSILRLLANAYLEWDTYE-------SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred cHHHHHHHHHHHHHHHHHcCCChH-------HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 33 233444444444443 2224555666666677887777644444444444443333333333333
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCC
Q psy11738 167 TL-PTSSYEEALKYFLEAEKQHP 188 (323)
Q Consensus 167 ~~-~~~~~~~A~~~~~~al~~~p 188 (323)
.. +...++.++.++....+.+|
T Consensus 151 ~~~~e~~~~~~l~~i~~l~~~~~ 173 (278)
T PF08631_consen 151 VDHSESNFDSILHHIKQLAEKSP 173 (278)
T ss_pred cccccchHHHHHHHHHHHHhhCc
Confidence 22 33344455555555444444
|
It is also involved in sporulation []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.012 Score=50.95 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
...|+..|.+|.+-.+-+...|...|.+-+..++ +.+.|.+.|+.+++..|.+ ...|...
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~-------------------d~~~A~~Ife~glk~f~~~-~~~~~~Y 76 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNK-------------------DPKRARKIFERGLKKFPSD-PDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--------------------HHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-------------------CHHHHHHHHHHHHHHCCCC-HHHHHHH
Confidence 3488999999997777788899888888666442 2256999999999999997 6888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
...+...|+.+.|...|++++..-|....... ++.+...--. .-|+.+.......++.+..|+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~--------iw~~~i~fE~---~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKK--------IWKKFIEFES---KYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHH--------HHHHHHHHHH---HHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHH--------HHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999987554431100 0111000000 1367778888888888887764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.037 Score=52.66 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=70.0
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC---CHHHHH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE---NYEQAA 212 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g---~~~~A~ 212 (323)
++.+.+.+|.+|........ -++..|+.+|.++-+... +.+.+.+|.+|..-. ++..|.
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~---------------~d~~~A~~~~~~aA~~g~---~~a~~~lg~~~~~g~~~~d~~~A~ 348 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEK---------------IDYEKALKLYTKAAELGN---PDAQYLLGVLYETGTKERDYRRAF 348 (552)
T ss_pred CCccccHHHHHHhcCCCCcc---------------ccHHHHHHHHHHHHhcCC---chHHHHHHHHHHcCCccccHHHHH
Confidence 45566677766665432200 034667777777766533 245666777766554 456777
Q ss_pred HHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh-cC
Q psy11738 213 YYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-EN 290 (323)
Q Consensus 213 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~-g~ 290 (323)
++|..|.... +..+. + .++.++. |....-+...|..+++++.+..+ +.+...++..+... ++
T Consensus 349 ~yy~~Aa~~G--~~~A~-~----------~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~---~~A~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 349 EYYSLAAKAG--HILAI-Y----------RLALCYELGLGVERNLELAFAYYKKAAEKGN---PSAAYLLGAFYEYGVGR 412 (552)
T ss_pred HHHHHHHHcC--ChHHH-H----------HHHHHHHhCCCcCCCHHHHHHHHHHHHHccC---hhhHHHHHHHHHHcccc
Confidence 7777775531 11110 0 1111111 22234567788888888887773 34455666555533 66
Q ss_pred HHHHHHHHHH
Q psy11738 291 YEQAAYYLEM 300 (323)
Q Consensus 291 ~~~A~~~~~~ 300 (323)
++.+.-.+..
T Consensus 413 ~~~~~~~~~~ 422 (552)
T KOG1550|consen 413 YDTALALYLY 422 (552)
T ss_pred ccHHHHHHHH
Confidence 6665544433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.12 Score=46.11 Aligned_cols=173 Identities=13% Similarity=0.052 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc----CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL----KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l----~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
....+-..|....+++ ..++..+..-.+ -++.+...+.+|-++.+.+. .
T Consensus 143 iv~~lllSyRdiqdyd----------amI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~-----------------~ 195 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYD----------AMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNK-----------------P 195 (374)
T ss_pred HHHHHHHHhhhhhhHH----------HHHHHHHHhhccCccchhcchHHHHHHHHHHhhccc-----------------C
Confidence 3344444455555554 444555544444 34566666666766555222 2
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc---------CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL---------ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQR 241 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 241 (323)
|+.++|+..+..++....+..++.+..+|.+|..+ ...++|+.+|+++..++|+......+.. ..
T Consensus 196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~At-----LL- 269 (374)
T PF13281_consen 196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAAT-----LL- 269 (374)
T ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHH-----HH-
Confidence 66799999999966554443378899999987532 2377999999999999977654322111 00
Q ss_pred HHHHHhhccCCCCcHHHHHHHH---H-----H-HHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 242 KIANAIFDTLPTSSYEEALKYF---L-----E-AEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 242 ~~a~~~~~~~~~~~~~~Al~~~---~-----~-a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+.+... ..-.+..... . + ..+-.+++ ..+-.++.+..-.|+++.|..++++++.+.|.
T Consensus 270 ----~~~g~~~-~~~~el~~i~~~l~~llg~kg~~~~~~dY--Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 270 ----MLAGHDF-ETSEELRKIGVKLSSLLGRKGSLEKMQDY--WDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ----HHcCCcc-cchHHHHHHHHHHHHHHHhhccccccccH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 0001100 0111111111 0 1 11112222 34567788888999999999999999999655
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00024 Score=60.90 Aligned_cols=87 Identities=17% Similarity=0.017 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
|.+++|+..+-.+++++|..+..|.+.+.++..+.... .+++-+..|++++|+....+-..|+.+..+|+
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~----------~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPN----------AAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCc----------hhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 45778999999999999999999999999999998888 78888999999999998888888888888877
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 189 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 189 (323)
+ ++|..++..+++++-+
T Consensus 198 ~--------------------e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 198 W--------------------EEAAHDLALACKLDYD 214 (377)
T ss_pred h--------------------HHHHHHHHHHHhcccc
Confidence 6 8888888888887655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00021 Score=40.66 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 277 NVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 277 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
++..||.+|..+|++++|+.+|++++.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999876643
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.072 Score=43.78 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCCCchh-----HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHH
Q psy11738 172 SYEEALKYFLEAEKQHPLFYS-----QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~-----~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~ 246 (323)
+++.||.+|+.+-+.-.+.-. ..++.-+..-...++|.+|+..|++...-.-++....+ +-...+.+ +
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy---s~Kdyflk----A 201 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY---SAKDYFLK----A 201 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh---HHHHHHHH----H
Confidence 458899999988776333211 34555677778999999999999998765444432211 11111111 1
Q ss_pred hhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 247 IFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 247 ~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
.+-.....+.-.+-..+++-.+++|.+
T Consensus 202 gLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 202 GLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 111111334445555556666788876
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.063 Score=47.36 Aligned_cols=153 Identities=13% Similarity=0.071 Sum_probs=101.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
.+|.+++.|..+...--.+-...... ........+.-+..+++|++.+|++...+..+-.+....-...
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~-~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~---------- 82 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSS-KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE---------- 82 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccc-hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH----------
Confidence 69999999998887655443322210 2334556778899999999999988876655444444333222
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHh-cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-------C----C
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEI-TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ-------H----P 188 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~----p 188 (323)
+..+.+++++..+|+++..|..+-.+.+.. +.+ .+......|.+++.. . +
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f------------------~v~~~~~~y~~~l~~L~~~~~~~~~~~~ 144 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASF------------------TVSDVRDVYEKCLRALSRRRSGRMTSHP 144 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccC------------------cHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 566789999999999999887766544432 221 224444444444432 1 0
Q ss_pred C------chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 189 L------FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 189 ~------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
. ....++..+.......|-.+.|+..++..++++
T Consensus 145 ~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 145 DLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred chhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 0 012456667788899999999999999999874
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00099 Score=37.86 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 194 NVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 194 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
++.+||.+|..+|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999997654
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.03 Score=46.22 Aligned_cols=175 Identities=13% Similarity=0.073 Sum_probs=92.4
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc----
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH---- 92 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---- 92 (323)
.+-+..+...++|++|-..+.++ +--.+...+|--|.+|-..+-... ....+.++..++++|..+.-++
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak------e~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK------ELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 33344444568888888877776 222223446666666655553322 1445667777777776654221
Q ss_pred -HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh---HHHH---HhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 93 -YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST---TLFM---LGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~---~~~~---lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+..-.-.+--...--+++ +|++.|++++.+-..+.. +.-. .++++.+.
T Consensus 109 tAAmaleKAak~lenv~Pd----------~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl--------------- 163 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPD----------DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL--------------- 163 (308)
T ss_pred hHHHHHHHHHHHhhcCCHH----------HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh---------------
Confidence 111111111111112222 567777777766443322 2222 23333333
Q ss_pred cCCCCCCHHHHHHHHHHHHh----cCCCch-hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 166 DTLPTSSYEEALKYFLEAEK----QHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~----~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
.+|.+|-..|.+-.. .+.-+. ...+...-.+|....+|..|..+++...+++......
T Consensus 164 -----~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se 226 (308)
T KOG1585|consen 164 -----EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE 226 (308)
T ss_pred -----HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH
Confidence 245888777777433 232220 1234444455666779999999999988876655443
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00033 Score=60.12 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
|.++.|+.+|..+++++|.. +..+-..+.++++++++..|+.-|..|+.++|+.
T Consensus 128 G~~~~ai~~~t~ai~lnp~~-a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPL-AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred cchhhhhcccccccccCCch-hhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence 33466666666666666654 4555555555555555555555555555555544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00058 Score=37.75 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++++.+|.+|...|++++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 368899999999999999999999999988863
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.045 Score=52.06 Aligned_cols=153 Identities=16% Similarity=0.087 Sum_probs=100.5
Q ss_pred hccHHHHHHHHHhC-C------CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHH
Q psy11738 27 EQQFEEVNKMLESS-E------YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWL 99 (323)
Q Consensus 27 ~~~~~~A~~~~~~~-~------~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 99 (323)
..+.+.|+..++.+ . ...++.+...+|.+|..-..... . +...|+.++.++.+.. ++++.+.+
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~-------~-d~~~A~~~~~~aA~~g--~~~a~~~l 331 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK-------I-DYEKALKLYTKAAELG--NPDAQYLL 331 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc-------c-cHHHHHHHHHHHHhcC--CchHHHHH
Confidence 35777777777665 2 12345566778888876543322 1 5678999999999885 67788889
Q ss_pred HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy11738 100 AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179 (323)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (323)
|.++.... .. .+...|.++|..|.. -.+..+.+.+|.+|..-... ..+...|..+
T Consensus 332 g~~~~~g~-~~------~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv----------------~r~~~~A~~~ 386 (552)
T KOG1550|consen 332 GVLYETGT-KE------RDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGV----------------ERNLELAFAY 386 (552)
T ss_pred HHHHHcCC-cc------ccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCc----------------CCCHHHHHHH
Confidence 98887655 11 222378888888874 46888999999876543111 1234999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHc-CCHHHHHHHHHH
Q psy11738 180 FLEAEKQHPLFYSQNVLMLGKTYMRL-ENYEQAAYYLEM 217 (323)
Q Consensus 180 ~~~al~~~p~~~~~~~~~lg~~y~~~-g~~~~A~~~~~~ 217 (323)
|+++-+.++ +.+.+.++.++... ++++.+.-.+..
T Consensus 387 ~k~aA~~g~---~~A~~~~~~~~~~g~~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 387 YKKAAEKGN---PSAAYLLGAFYEYGVGRYDTALALYLY 422 (552)
T ss_pred HHHHHHccC---hhhHHHHHHHHHHccccccHHHHHHHH
Confidence 999999872 35555566555433 666655544433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.21 Score=44.25 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC---CCCchhhhhhhcchhHHHHHHHHHh
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP---VKQDKDQCFEITDMPWYQRKIANAI 247 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~a~~~ 247 (323)
|.++-|..+-.++.+.-|.- +++....-...+..||++.|++..+...... +...+.....+ ..-+.. .+
T Consensus 168 GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvL-----LtAkA~-s~ 240 (531)
T COG3898 168 GAREAARHYAERAAEKAPQL-PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVL-----LTAKAM-SL 240 (531)
T ss_pred ccHHHHHHHHHHHHhhccCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHH-----HHHHHH-HH
Confidence 56699999999999999996 6888888888899999999999998765432 22111111111 111111 11
Q ss_pred hccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
. ..+-..|...-..+.++.|++ ...-..-+..+...|+.-++-..++.+-+..||.+.
T Consensus 241 l----dadp~~Ar~~A~~a~KL~pdl-vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 241 L----DADPASARDDALEANKLAPDL-VPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred h----cCChHHHHHHHHHHhhcCCcc-chHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 1 345678899999999999998 677788899999999999999999999999999554
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.19 Score=43.64 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=107.3
Q ss_pred HhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy11738 25 FEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILN 104 (323)
Q Consensus 25 ~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 104 (323)
...+.+..|+..+..+....++...+.++..|..-..... +..+|+.++..+.+ ..++.+.+.+|.+|.
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~---------~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~ 120 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSR---------DKTKAADWYRCAAA--DGLAEALFNLGLMYA 120 (292)
T ss_pred cccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccc---------cHHHHHHHHHHHhh--cccHHHHHhHHHHHh
Confidence 4568889999988887444555788888888876554433 46789999996555 457888889998887
Q ss_pred HhhcccchHHHHHhHHHHHHHHHHHHccCCCC-hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy11738 105 EKATLEGTKARIQQLETIKHHMNKAIELKPDD-STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 183 (323)
Q Consensus 105 ~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 183 (323)
.-.-.. .+..+|..+|.+|.+..-.. ..+.+.+|.++..-. . .... ..+...|+..|.++
T Consensus 121 ~G~gv~------~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~---~~~~---------~~~~~~A~~~~~~a 181 (292)
T COG0790 121 NGRGVP------LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-Q---ALAV---------AYDDKKALYLYRKA 181 (292)
T ss_pred cCCCcc------cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-h---hhcc---------cHHHHhHHHHHHHH
Confidence 632111 14458999999999875444 345888887765531 0 0000 01225788888888
Q ss_pred HhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCC
Q psy11738 184 EKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNY 221 (323)
Q Consensus 184 l~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 221 (323)
-... + +.+.+.+|.+|.. ..++.+|+.+|.+|...
T Consensus 182 a~~~--~-~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 182 AELG--N-PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred HHhc--C-HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 8765 2 4677788876643 22455555555555444
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.055 Score=44.75 Aligned_cols=170 Identities=18% Similarity=0.185 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH------HHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT------LFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~------~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
.+...+.++....+++ +|+.++.+|.+-..+|... +...|.+...+.
T Consensus 33 ~yekAAvafRnAk~fe----------KakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~----------------- 85 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFE----------KAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELS----------------- 85 (308)
T ss_pred HHHHHHHHHHhhccHH----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH-----------------
Confidence 3444456666667777 7777788887655444332 222232222222
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCCchhHHHHHHHHH--HHHcCCHHHHHHHHHHHhCCCCCCchhhh-hhhcchhHHH
Q psy11738 169 PTSSYEEALKYFLEAEKQ-----HPLFYSQNVLMLGKT--YMRLENYEQAAYYLEMTKNYPVKQDKDQC-FEITDMPWYQ 240 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~--y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~ 240 (323)
.+.++..+|++|..+ .|+ ++-..|+.. ..+.-++++|+..|++++.+-..+..... +.+ .
T Consensus 86 ---klsEvvdl~eKAs~lY~E~Gspd---tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el------~ 153 (308)
T KOG1585|consen 86 ---KLSEVVDLYEKASELYVECGSPD---TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL------Y 153 (308)
T ss_pred ---HhHHHHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH------H
Confidence 349999999999887 343 333444433 56677899999999999988666554433 111 1
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHhh------CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 241 RKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~Al~~~~~a~~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+.+..+ ....+|++|-..+.+-... .|+. -..+...-.+|+...||..|..+++....++.-
T Consensus 154 gk~sr~l---Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~-~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f 222 (308)
T KOG1585|consen 154 GKCSRVL---VRLEKFTEAATAFLKEGVAADKCDAYNSQ-CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF 222 (308)
T ss_pred HHhhhHh---hhhHHhhHHHHHHHHhhhHHHHHhhcccH-HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc
Confidence 1111111 1245788887777664433 2222 234555556677788999999999997777654
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.11 Score=45.18 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=111.2
Q ss_pred hccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc-HHHHHHHHHHHHH
Q psy11738 27 EQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH-YAIHKWLAVILNE 105 (323)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~ 105 (323)
..+..+|+..+...-...++...+.+|..|..-.-.. .+..+|..++++|.+..-.. ..+.+.+|.++..
T Consensus 90 ~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~---------~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~ 160 (292)
T COG0790 90 SRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVP---------LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS 160 (292)
T ss_pred cccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcc---------cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc
Confidence 3568899999997767788899999999887633121 15688999999999985322 2337778877776
Q ss_pred hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q psy11738 106 KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 185 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 185 (323)
-....+. ......|...|.++.... ++.+.+.+|.+|..-.-. ..++.+|+.+|.++-+
T Consensus 161 g~~~~~~---~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv----------------~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 161 GLQALAV---AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV----------------PRDLKKAFRWYKKAAE 219 (292)
T ss_pred Chhhhcc---cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC----------------CcCHHHHHHHHHHHHH
Confidence 4311111 112236778888888776 888999999766442110 1356999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHcC---------------CHHHHHHHHHHHhCC
Q psy11738 186 QHPLFYSQNVLMLGKTYMRLE---------------NYEQAAYYLEMTKNY 221 (323)
Q Consensus 186 ~~p~~~~~~~~~lg~~y~~~g---------------~~~~A~~~~~~al~~ 221 (323)
... ..+.+.++ ++...| +...|..++..+...
T Consensus 220 ~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 220 QGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred CCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 876 37788888 777666 666666666666554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0021 Score=34.59 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
.+++.+|.++..+|++++|+.+++++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46889999999999999999999999998775
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.094 Score=46.98 Aligned_cols=166 Identities=15% Similarity=0.191 Sum_probs=106.0
Q ss_pred hhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC-----------------
Q psy11738 26 EEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ----------------- 88 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------- 88 (323)
.+++.+.-+.++. ..|-+++++..++.++...|+...+ .+.++.|+-.+++++--
T Consensus 22 ~~~Dp~~l~~ll~--~~PyHidtLlqls~v~~~~gd~~~A------~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~ 93 (360)
T PF04910_consen 22 QSHDPNALINLLQ--KNPYHIDTLLQLSEVYRQQGDHAQA------NDLLERALFAFERAFHPSFSPFRSNLTSGNCRLD 93 (360)
T ss_pred HccCHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHH------HHHHHHHHHHHHHHHHHHhhhhhcccccCccccC
Confidence 3456666555654 4799999999999999999986554 66777787777755321
Q ss_pred --CCCcHHHHHH---HHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-ChhHHHHHhh-HHHHhcCCcHHHHHHH
Q psy11738 89 --HEDHYAIHKW---LAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-DSTTLFMLGM-WCFEITDMPWYQRKIA 161 (323)
Q Consensus 89 --~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~~~~~~~lg~-~~~~~~~~~~~~~~~~ 161 (323)
.|.|-..+.. ....+...|.+. .|.+.++-.+.+||. ||......-. ...+.+++.|+.+...
T Consensus 94 ~~~~eNR~fflal~r~i~~L~~RG~~r----------TAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 94 YRRPENRQFFLALFRYIQSLGRRGCWR----------TALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred CccccchHHHHHHHHHHHHHHhcCcHH----------HHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 1223332222 233344444444 899999999999999 8876544443 3355556666555443
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCH---------------HHHHHHHHHHhCCCCCC
Q psy11738 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY---------------EQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~---------------~~A~~~~~~al~~~~~~ 225 (323)
+.. ...+...+..-|+. -+.++.++...++. +.|...+.+|+...|.-
T Consensus 164 ~~~------------~~~~~~~~~~lPn~----a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 164 SPL------------AKCYRNWLSLLPNF----AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hHh------------hhhhhhhhhhCccH----HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 210 00122223334543 56678888888888 89999999999886653
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0012 Score=36.49 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 277 NVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 277 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+++.+|.+|...|++++|+..|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5789999999999999999999999988776
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.21 Score=44.83 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC-CchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh---
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK-QDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK--- 268 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~--- 268 (323)
.+.+.....+.+.|-+..|.++++-.+++||. |+-...+.+.-.+ + ..++|+=-+..+.....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A---------L----rs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA---------L----RSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH---------H----hcCCHHHHHHHHHhHhhhhh
Confidence 45666677889999999999999999999999 5433221111110 0 13445444444443222
Q ss_pred -----hCCcchhhhhHHHHHHHHHhcCH---------------HHHHHHHHHhhCCCCh
Q psy11738 269 -----QHPLFYSQNVLMLGKTYMRLENY---------------EQAAYYLEMTKNYPAV 307 (323)
Q Consensus 269 -----~~p~~~~~~~~~lg~~y~~~g~~---------------~~A~~~~~~al~~~~~ 307 (323)
.-|+ ..+..+.++..+++. +.|...+.+|+..-|.
T Consensus 171 ~~~~~~lPn----~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 171 RNWLSLLPN----FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhCcc----HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 2343 357788888888888 8899999999888775
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0058 Score=37.97 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHH
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLE 315 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~ 315 (323)
+.++.+|..+.++|+|++|..+.+.+|++.|++.-...|+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3468899999999999999999999999988765543333
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0039 Score=33.42 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
..++.+|.+|..+|+++.|+.+|++++++.|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45789999999999999999999999998774
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.067 Score=41.12 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
.|++++|+..+++++.++|.+ ..++..+-.+|...|+..+|+..|++...
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467899999999999999998 68999999999999999999999998754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0041 Score=52.84 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
+.|..++|...|+-|+.++|.+++++..+|.+...-.+.. +|-.+|-+|+.++|.|.++..+..+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv----------~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIV----------EADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhH----------hhhhhhheeeeeCCCchHHHhhhhcc
Confidence 4567899999999999999999999988888777666555 88899999999999999998887653
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.015 Score=52.59 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=102.0
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh-ccCCCC---
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA-LPQHED--- 91 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~p~--- 91 (323)
.-++..++...+..-+....+.+ ...+.+.+++.-+..++..|++. +|...+... +...|.
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~-------------kA~KlL~~sni~~~~g~~~ 276 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHP-------------KAMKLLLVSNIHKEAGGTI 276 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchH-------------HHHHHHHhcccccccCccc
Confidence 33556666777777777766665 34477788888899999888654 355544332 222232
Q ss_pred ---c--HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc---------cCC---------CChhHHHHHhhHHH
Q psy11738 92 ---H--YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE---------LKP---------DDSTTLFMLGMWCF 148 (323)
Q Consensus 92 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~---------l~p---------~~~~~~~~lg~~~~ 148 (323)
- .-++.++|.+.+.++.+. -+.-+|.+|+. +.| ...+..|+.|..+.
T Consensus 277 T~q~~~cif~NNlGcIh~~~~~y~----------~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~L 346 (696)
T KOG2471|consen 277 TPQLSSCIFNNNLGCIHYQLGCYQ----------ASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL 346 (696)
T ss_pred cchhhhheeecCcceEeeehhhHH----------HHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHH
Confidence 1 123467788888888776 56677888885 222 24567889999888
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 206 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g 206 (323)
..|.. -.|.++|.++......+ +..|+.|+.|++...
T Consensus 347 h~grP--------------------l~AfqCf~~av~vfh~n-PrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 347 HSGRP--------------------LLAFQCFQKAVHVFHRN-PRLWLRLAECCIMAL 383 (696)
T ss_pred hcCCc--------------------HHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHh
Confidence 88776 99999999999998887 689999999987543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.1 Score=46.45 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=101.8
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHH
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYK------EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVY 83 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~ 83 (323)
..+.....+.-+......|+++-|...+.++... ..+.+.+..++.....|+. .+|+..++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~-------------~~Ai~~L~ 208 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQ-------------EEAIQKLR 208 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCH-------------HHHHHHHH
Confidence 4455666788888899999999999988887321 2567777788888888754 23444444
Q ss_pred hhccCCC-------------------------C--cHHHHHHHHHHHHHhhcccchH---HHHHhHHHHHHHHHHHHccC
Q psy11738 84 NALPQHE-------------------------D--HYAIHKWLAVILNEKATLEGTK---ARIQQLETIKHHMNKAIELK 133 (323)
Q Consensus 84 ~al~~~p-------------------------~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~al~l~ 133 (323)
..++..+ . ........+.++..+|++.... .......++...|.++++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~ 288 (352)
T PF02259_consen 209 ELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD 288 (352)
T ss_pred HHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC
Confidence 4444100 0 1112233456666666655322 01244557889999999999
Q ss_pred CCChhHHHHHhhHHHHhcCCcHHH-H-----HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 134 PDDSTTLFMLGMWCFEITDMPWYQ-R-----KIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 134 p~~~~~~~~lg~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
|+...+|+.+|..+...-...... . ..... -..|+.+|-+++...|..
T Consensus 289 ~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 289 PSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEY---------LEQAIEGYLKALSLGSKY 342 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHH---------HHHHHHHHHHHHhhCCCc
Confidence 999999999998876653221100 0 00000 167899999999998874
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.61 Score=41.43 Aligned_cols=153 Identities=17% Similarity=0.046 Sum_probs=98.2
Q ss_pred CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHcCCHH
Q psy11738 133 KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYE 209 (323)
Q Consensus 133 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~y~~~g~~~ 209 (323)
.......+..++.+....|.+ +-|...+.++...++.. .+.+.+..+..+-..|+..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~--------------------~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~ 201 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNF--------------------QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQE 201 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCc--------------------HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHH
Confidence 444455566666666666544 99999999988865221 2466777889999999999
Q ss_pred HHHHHHHHHhCC-CCCCch-----h-----------------hhhhhcchhHHHHHHHHHhhccC----CCCcHHHHHHH
Q psy11738 210 QAAYYLEMTKNY-PVKQDK-----D-----------------QCFEITDMPWYQRKIANAIFDTL----PTSSYEEALKY 262 (323)
Q Consensus 210 ~A~~~~~~al~~-~~~~~~-----~-----------------~~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~Al~~ 262 (323)
+|+..++..+.. ...... . ........+-....++.-. ... ..+..++++..
T Consensus 202 ~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~-~~~~~~~~~~~~~~~~~~ 280 (352)
T PF02259_consen 202 EAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL-DELYSKLSSESSDEILKY 280 (352)
T ss_pred HHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH-HhhccccccccHHHHHHH
Confidence 999999988872 111100 0 0000000000000111100 112 45789999999
Q ss_pred HHHHHhhCCcchhhhhHHHHHHHHHhcCH-----------------HHHHHHHHHhhCCCCh
Q psy11738 263 FLEAEKQHPLFYSQNVLMLGKTYMRLENY-----------------EQAAYYLEMTKNYPAV 307 (323)
Q Consensus 263 ~~~a~~~~p~~~~~~~~~lg~~y~~~g~~-----------------~~A~~~~~~al~~~~~ 307 (323)
|..++.++|+. ...++.+|..+...-+. ..|+.+|-+++...+.
T Consensus 281 ~~~a~~~~~~~-~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 281 YKEATKLDPSW-EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhChhH-HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999987 68899999887654222 3488899999988777
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.24 Score=43.70 Aligned_cols=121 Identities=12% Similarity=-0.046 Sum_probs=80.7
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhhcccc--hHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHH
Q psy11738 80 FLVYNALPQHEDHYAIHKWLAVILNEKATLEG--TKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQ 157 (323)
Q Consensus 80 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~ 157 (323)
.-+++.++-+|.+.+++..+............ ........+.-+..+++|++.+|++...+..+=......-+-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~---- 81 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS---- 81 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH----
Confidence 45778899999999998888776665544332 122233344556789999999999888776655554444332
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH-HHH--cCCHHHHHHHHHHHhCC
Q psy11738 158 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT-YMR--LENYEQAAYYLEMTKNY 221 (323)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~-y~~--~g~~~~A~~~~~~al~~ 221 (323)
++..+-+++++..+|++ ...|...-.. ... .-.++.....|.+++..
T Consensus 82 ----------------~~l~~~we~~l~~~~~~-~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 82 ----------------EKLAKKWEELLFKNPGS-PELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred ----------------HHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 77788899999999997 4555443322 222 33466777777777653
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.065 Score=40.03 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=59.4
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK-QHPLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
.....++++++.....+- .+.++.+..++..++ -+|...-...++|+..++++++|+.++.+
T Consensus 31 s~~s~f~lAwaLV~S~~~-----------------~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~y 93 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDT-----------------EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRY 93 (149)
T ss_pred hHHHHHHHHHHHHcccch-----------------HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHH
Confidence 345566777666544332 123788999999996 66665457788999999999999999999
Q ss_pred HHHHhCCCCCCchhh
Q psy11738 215 LEMTKNYPVKQDKDQ 229 (323)
Q Consensus 215 ~~~al~~~~~~~~~~ 229 (323)
++..++..|++....
T Consensus 94 vd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 94 VDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHhhCCCcHHHH
Confidence 999999999987653
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.11 Score=42.75 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=54.8
Q ss_pred hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHHHcCCHHHHH
Q psy11738 138 TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
..+..++++|-..++.......+ ..|+..|.++++.... +.....+.+|.++++.|++++|+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl-------------~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~ 185 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFL-------------RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAK 185 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHH-------------HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 34566677776666643333333 8899999999986433 22367888999999999999999
Q ss_pred HHHHHHhCCCCC
Q psy11738 213 YYLEMTKNYPVK 224 (323)
Q Consensus 213 ~~~~~al~~~~~ 224 (323)
.+|.+++.....
T Consensus 186 ~~fs~vi~~~~~ 197 (214)
T PF09986_consen 186 RWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHcCCCC
Confidence 999999886433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.01 Score=36.90 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
+.++.++..+.++|+|++|..+.+.+++++|++...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 457889999999999999999999999999998754
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.073 Score=37.28 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=46.4
Q ss_pred HHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHH
Q psy11738 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTY 202 (323)
Q Consensus 124 ~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~lg~~y 202 (323)
..+++.++.+|+|..+.+.++..+...|++ ++|+..+..+++.++++. ..+.-.+-.++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~--------------------e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDY--------------------EEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-H--------------------HHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 457777888888888888888877776654 888888888888776641 24455555666
Q ss_pred HHcCCHHHHHHHHHH
Q psy11738 203 MRLENYEQAAYYLEM 217 (323)
Q Consensus 203 ~~~g~~~~A~~~~~~ 217 (323)
..+|.-+.-...|++
T Consensus 69 ~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 69 ELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHH-TT-HHHHHHHH
T ss_pred HHcCCCChHHHHHHH
Confidence 666665444444443
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.054 Score=50.23 Aligned_cols=96 Identities=17% Similarity=0.047 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhccCCCCcHH-HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYA-IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
.|+-..|+.++..|+...|.... ...+++.++...+... .|-..+.+++.+.-..|..++.+|+.+..+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~----------da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHL----------DATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhc----------cHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 44556799999999999998665 3577888888877555 677889999999999999999999999988
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
.+. +.|+++|+.|+.++|++ +..-..|
T Consensus 690 ~~i--------------------~~a~~~~~~a~~~~~~~-~~~~~~l 716 (886)
T KOG4507|consen 690 KNI--------------------SGALEAFRQALKLTTKC-PECENSL 716 (886)
T ss_pred hhh--------------------HHHHHHHHHHHhcCCCC-hhhHHHH
Confidence 877 99999999999999998 4554333
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.057 Score=40.33 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=53.9
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHh-hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEK-QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~-~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
-++.+..++.+..+.+..+...++ -+|...-...++|+..+.++|+|+.++.+....++..|++.-
T Consensus 40 waLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 40 WALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 334555567788999999999996 677664567899999999999999999999999999776443
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.033 Score=51.54 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=75.2
Q ss_pred HhHHHHHHHHHHHHccCCCChh-HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHH
Q psy11738 117 QQLETIKHHMNKAIELKPDDST-TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV 195 (323)
Q Consensus 117 ~~~~~a~~~~~~al~l~p~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 195 (323)
++-..|+.++.+|+-+.|.... ...+|+.+...-+-. .+|-..+..++.+.... +..+
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~--------------------~da~~~l~q~l~~~~se-pl~~ 679 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH--------------------LDATKLLLQALAINSSE-PLTF 679 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh--------------------ccHHHHHHHHHhhcccC-chHH
Confidence 3444788999999999997655 467788776655433 78999999999998765 6889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 196 LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 196 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
+.+|.+|.-+.+.+.|++.++.|++++|+...
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhcCCCChh
Confidence 99999999999999999999999999999864
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.028 Score=47.99 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy11738 120 ETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 120 ~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg 199 (323)
++|...|+.|++++|.++.+...+|.+.-...++ -+|-.+|-+|+.++|.+ ..++.+..
T Consensus 133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i--------------------v~ADq~Y~~ALtisP~n-seALvnR~ 191 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQILIEMGQFREMHNEI--------------------VEADQCYVKALTISPGN-SEALVNRA 191 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh--------------------HhhhhhhheeeeeCCCc-hHHHhhhh
Confidence 3899999999999999999999999876555544 78999999999999998 67777665
Q ss_pred HH
Q psy11738 200 KT 201 (323)
Q Consensus 200 ~~ 201 (323)
..
T Consensus 192 RT 193 (472)
T KOG3824|consen 192 RT 193 (472)
T ss_pred cc
Confidence 43
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.79 Score=40.96 Aligned_cols=176 Identities=12% Similarity=0.089 Sum_probs=115.5
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhc--ccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKAT--LEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
.+++..-.+.++.+|+...+|...-.++...-. -.....+.....+-+.+...+++.+|+...+|+.+..+....+..
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 346777778888888888887665544443322 111122223444566788999999999999999999887766532
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC----CHHHHHHHHHHHhCCCCCCchhh
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE----NYEQAAYYLEMTKNYPVKQDKDQ 229 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g----~~~~A~~~~~~al~~~~~~~~~~ 229 (323)
++..-++...++++.||.++ .+|-..=.++.+.. ...+=+++..+++.-++.+..+
T Consensus 126 ------------------~~~~EL~lcek~L~~D~RNf-h~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsa- 185 (421)
T KOG0529|consen 126 ------------------DWNTELQLCEKALKQDPRNF-HAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSA- 185 (421)
T ss_pred ------------------hHHHHHHHHHHHHhcCcccc-cchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhH-
Confidence 34778899999999999985 55544444433333 3567788889988877776554
Q ss_pred hhhhcchhHHHHHH-HHHhhccCCCC------cHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 230 CFEITDMPWYQRKI-ANAIFDTLPTS------SYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 230 ~~~~~~~~~~~~~~-a~~~~~~~~~~------~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
|.++.+ ...+++....| ....-++.-..|+-.+|++ ...|++
T Consensus 186 --------WhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~D-qS~WfY 234 (421)
T KOG0529|consen 186 --------WHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPED-QSCWFY 234 (421)
T ss_pred --------HHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccc-cceeee
Confidence 333321 22223322233 3456678888899999998 566665
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.065 Score=42.83 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC--chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ--DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 270 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~ 270 (323)
.++..+|..|.+.|+.++|+++|.++....... ..+.++.+..++.+ .+++.....+..++..+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-------------~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-------------FGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHH
Confidence 678899999999999999999999987653221 11111222222111 467888888877777653
Q ss_pred Cc--c---hhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 271 PL--F---YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 271 p~--~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.. + ....-..-|..++..++|.+|...|-.+.-
T Consensus 104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 22 1 112345668889999999999999966543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.065 Score=49.08 Aligned_cols=106 Identities=14% Similarity=-0.039 Sum_probs=87.1
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
++.++-++++++.-+..+....|+..+.++ ..|.....+...+.++...+=.. ..-.|+..+-.|+++
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~----------d~~~AlrDch~Alrl 440 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRG----------DSYLALRDCHVALRL 440 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccc----------cHHHHHHhHHhhccC
Confidence 556677888888888889999999999887 58888888888888887654221 235589999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD 136 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 136 (323)
+|....+|++++.++..++++. +|+++..-+.-..|.+
T Consensus 441 n~s~~kah~~la~aL~el~r~~----------eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 441 NPSIQKAHFRLARALNELTRYL----------EALSCHWALQMSFPTD 478 (758)
T ss_pred ChHHHHHHHHHHHHHHHHhhHH----------HhhhhHHHHhhcCchh
Confidence 9999999999999999999988 7777777777777754
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.3 Score=35.31 Aligned_cols=91 Identities=11% Similarity=0.089 Sum_probs=68.6
Q ss_pred HHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCC-cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHH
Q psy11738 121 TIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDM-PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 196 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 196 (323)
+|.+..+..+..++++. ..+..-|.+++.++.. ....-+..- .-.++.+|.++..+.|.. +..++
T Consensus 14 KAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~y----------Ll~sve~~s~a~~Lsp~~-A~~L~ 82 (111)
T PF04781_consen 14 KALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRY----------LLGSVECFSRAVELSPDS-AHSLF 82 (111)
T ss_pred HHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHH----------HHHhHHHHHHHhccChhH-HHHHH
Confidence 89999999999999887 5667778888766521 100111111 167899999999999996 78899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 197 MLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 197 ~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
.+|.-+--..-|++++.-.++++++.
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99988777778889999888888763
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.59 Score=40.35 Aligned_cols=147 Identities=16% Similarity=0.068 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHhc----CCCch---hHHHHHHHHHHHHcC-CHHHHHHHHHHHhCCC----CCCchhhhhhhcchhH
Q psy11738 171 SSYEEALKYFLEAEKQ----HPLFY---SQNVLMLGKTYMRLE-NYEQAAYYLEMTKNYP----VKQDKDQCFEITDMPW 238 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~----~p~~~---~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~~~ 238 (323)
|+++.|..++.|+-.+ +|+.. +..+++.|......+ +++.|+.++++|.++- +.........- -...
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e-lr~~ 85 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE-LRLS 85 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH-HHHH
Confidence 5668999999987765 34431 256888899999999 9999999999998882 22211111000 0112
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC--hhHHHHHHHH
Q psy11738 239 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA--VQEATKLLEK 316 (323)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~--~~~~~~~l~~ 316 (323)
..+.++.+++.......+++|......+..-.|+. +..++.-=.+..+.++.+++.+.+.+.+.-.+ +.....++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~-~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNK-PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC-cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 33456677776555567778888888887777875 44443333334447889999999998887644 3333444444
Q ss_pred HHh
Q psy11738 317 AKS 319 (323)
Q Consensus 317 ~~~ 319 (323)
+..
T Consensus 165 i~~ 167 (278)
T PF08631_consen 165 IKQ 167 (278)
T ss_pred HHH
Confidence 433
|
It is also involved in sporulation []. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.028 Score=45.92 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
.++++.|.+.|..++++-|+. ...|+.+|..-.+.|+++.|...|++.++++|.+...
T Consensus 8 ~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred cCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 356799999999999999997 7899999999999999999999999999999998544
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.12 Score=36.09 Aligned_cols=48 Identities=15% Similarity=0.020 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 259 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 259 Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+..+++.+..+|++ ..+.+.+|..+...|++++|++.+-.++..++.
T Consensus 7 ~~~al~~~~a~~P~D-~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 7 DIAALEAALAANPDD-LDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred cHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 466788899999999 799999999999999999999999999999766
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.67 Score=33.97 Aligned_cols=93 Identities=17% Similarity=0.118 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhcCCCc-----------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLF-----------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWY 239 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~-----------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 239 (323)
+.|++|...+.++.+..-+- .+.++-.|+..+..+|+|++++..-++++
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL-------------------- 82 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL-------------------- 82 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--------------------
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--------------------
Confidence 45699999999988763221 12456778888999999998887665553
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc---hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 240 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.+|.+==+++.+. ++.+.+..|.++..+|+.++|+..|+++-+.
T Consensus 83 ---------------------~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 83 ---------------------RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp ---------------------HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ---------------------HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3333333334332 2345677899999999999999999987654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.6 Score=40.51 Aligned_cols=201 Identities=14% Similarity=0.047 Sum_probs=121.0
Q ss_pred HHHhhccCCCCcHHHHHHHHHHHHHhhcccch----HHHHHhHHHHHHHHHHHHccCCC-ChhHHHHHhhHHHHhcCCcH
Q psy11738 81 LVYNALPQHEDHYAIHKWLAVILNEKATLEGT----KARIQQLETIKHHMNKAIELKPD-DSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 81 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~~~~al~l~p~-~~~~~~~lg~~~~~~~~~~~ 155 (323)
.+++++.--+..+++|+-.+..+...++.... ........++...+++++..--. +...++.++. ++-+..
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~--~eE~~~-- 342 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALAD--YEESRY-- 342 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHhc--
Confidence 34555555566777777666555555442111 11112234677888888865432 2223333332 111111
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITD 235 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 235 (323)
+. ..++.--..+.+++.+...++..++..+-..-.+..-.+.|...|.+|-+..-...
T Consensus 343 ----------~~---n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h--------- 400 (656)
T KOG1914|consen 343 ----------DD---NKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH--------- 400 (656)
T ss_pred ----------cc---chhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc---------
Confidence 00 02466677788877764443335566666777777778888888888865422111
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CChhHHHH
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAVQEATK 312 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~~~~ 312 (323)
+-.++.++.....+++...|...|+-.+...++. +..-......+.++++-..|...|++++.- -|-+++.+
T Consensus 401 ----hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~-p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~ 473 (656)
T KOG1914|consen 401 ----HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDS-PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKE 473 (656)
T ss_pred ----hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHH
Confidence 1113333333344789999999999999999987 665566677788999999999999999977 33344433
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.094 Score=44.80 Aligned_cols=66 Identities=14% Similarity=0.018 Sum_probs=59.3
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHh
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKS 319 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~ 319 (323)
.++++.|+.+....+.+.|++ +.-+-..|.+|..+|.+..|...++..++.-|++...++++.--+
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~d-p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 194 EKQMELALRASEALLQFDPED-PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 689999999999999999998 677888999999999999999999999999998888877765443
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.17 Score=46.18 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=68.8
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHH
Q psy11738 77 SAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 77 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~ 156 (323)
.-...|..|+...+.++..|..........+.+. +....|.+++..+|++++.|..-+.+.+..+..
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~----------~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n--- 155 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYG----------EVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN--- 155 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchh----------HHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc---
Confidence 4466778888888877777766655555555454 555679999999999999999999998887742
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHH
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 194 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 194 (323)
.+.|...|.++|+.+|+. +..
T Consensus 156 ----------------i~saRalflrgLR~npds-p~L 176 (568)
T KOG2396|consen 156 ----------------IESARALFLRGLRFNPDS-PKL 176 (568)
T ss_pred ----------------hHHHHHHHHHHhhcCCCC-hHH
Confidence 289999999999999997 443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.046 Score=31.65 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
+.++.+||.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 367889999999999999999999999875
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=94.99 E-value=4.5 Score=40.69 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
...|-.|+..+..+|+|+.|+..-++|-..
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 355778899999999999999888887544
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.6 Score=34.20 Aligned_cols=110 Identities=16% Similarity=0.054 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC------------cHHHHHHHHHHHHHhhcccchHHHHH
Q psy11738 50 WRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED------------HYAIHKWLAVILNEKATLEGTKARIQ 117 (323)
Q Consensus 50 ~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (323)
...+.+|..+++-.. .-.-+.|++|-..+.+|++.... ++-+|.+++..+..+|+++ +.+.
T Consensus 4 keVa~aY~aLs~ae~----ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~---e~L~ 76 (144)
T PF12968_consen 4 KEVAMAYMALSDAER----QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYD---ECLQ 76 (144)
T ss_dssp HHHHHHHHHHHHHHH----HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HH---HHHH
T ss_pred HHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHH---HHHH
Confidence 345666666664321 12245688888888888766422 3446788889999999998 4555
Q ss_pred hHHHHHHHHHHHHccCCCChhHHH----HHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q psy11738 118 QLETIKHHMNKAIELKPDDSTTLF----MLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186 (323)
Q Consensus 118 ~~~~a~~~~~~al~l~p~~~~~~~----~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 186 (323)
....|..+|.+==+++.+....|. ..+..+... |+.++|++.|+.+-++
T Consensus 77 sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~--------------------Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 77 SADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGL--------------------GRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHT--------------------T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhc--------------------CChHHHHHHHHHHHHH
Confidence 666888899998899887665543 334443333 5669999999998875
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.092 Score=31.15 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhhc
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYLK 322 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~~ 322 (323)
.+.||.+|..+|+.+.|.+.+++.+.-.+ .+...+|+++|.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~----~~q~~eA~~LL~ 42 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGD----EAQRQEARALLA 42 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCC----HHHHHHHHHHHh
Confidence 36799999999999999999999985432 223445555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.4 Score=45.98 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=26.1
Q ss_pred CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 270 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 270 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
+|+...+.+..+|.-|...|+.+.|.++|-+|-+.
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 45543456778888999999999998888776544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.029 Score=32.51 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..++.+||.+|...|++++|..++++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356889999999999999999999999865
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.6 Score=39.95 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCc------HHHHH--------HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc---cC
Q psy11738 71 KKQLILSAYFLVYNALPQHEDH------YAIHK--------WLAVILNEKATLEGTKARIQQLETIKHHMNKAIE---LK 133 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~---l~ 133 (323)
..|.++++..+-++++..-.+. ..+.. +...|-...|++..+ +.+.....+.+.+.-. +.
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~a---l~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEA---LEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHHHhCCchHHHH
Confidence 3567777777777776543221 11111 122222334555422 2222233344443322 11
Q ss_pred CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHcCCHHHH
Q psy11738 134 PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS--QNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 134 p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~lg~~y~~~g~~~~A 211 (323)
-..+..++.+|..+...+.+ ++|..+|..|.++-..... ..-.+++.+|.+.|+.+.-
T Consensus 364 ~~~~~ih~LlGlys~sv~~~--------------------enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~ 423 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCY--------------------ENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDL 423 (629)
T ss_pred HhHHHHHHHHhhHhhhcchH--------------------HHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHH
Confidence 12456788888877777655 9999999999987443212 3456789999999987665
Q ss_pred HHHHHHHhCCCCCCchhhh-hhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc-----hhhhhHHHHHHH
Q psy11738 212 AYYLEMTKNYPVKQDKDQC-FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTY 285 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~-----~~~~~~~lg~~y 285 (323)
-+.++. +.|.+..... ..+.....+ +..++. ...+++.||-..+.+.++..... .+-.+..||.+.
T Consensus 424 y~~ld~---i~p~nt~s~ssq~l~a~~~~----v~glfa-f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~ 495 (629)
T KOG2300|consen 424 YKALDL---IGPLNTNSLSSQRLEASILY----VYGLFA-FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVF 495 (629)
T ss_pred HHHHHh---cCCCCCCcchHHHHHHHHHH----HHHHHH-HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Confidence 555554 3444321111 111010011 111121 12688999999999998876321 012356788999
Q ss_pred HHhcCHHHHHHHHHHhhC
Q psy11738 286 MRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 286 ~~~g~~~~A~~~~~~al~ 303 (323)
.-.|+..++..-..-++.
T Consensus 496 lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 496 LSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHhcchHHHHhccchHHH
Confidence 999999988765444433
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=94.57 E-value=3.4 Score=40.00 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=31.1
Q ss_pred CHHHHHHHHHH------HHhc----CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 172 SYEEALKYFLE------AEKQ----HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 172 ~~~~A~~~~~~------al~~----~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
++++|+++|++ ++++ .|......-...|.-+..+|+++.|+.+|-.|
T Consensus 676 d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 676 DFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred CHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 34777777765 4444 35432222344688889999999999988655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.65 Score=36.08 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=59.0
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
++...+.-.--+.|..++....-|.++...|++ .+|+..|+.+.+-.|.. +.+--.++.
T Consensus 28 D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w--------------------~dA~rlLr~l~~~~~~~-p~~kALlA~ 86 (160)
T PF09613_consen 28 DAEALLDALRVLRPEFPELDLFDGWLHIVRGDW--------------------DDALRLLRELEERAPGF-PYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHhccCCCC-hHHHHHHHH
Confidence 555667777778999999999999999998876 99999999999988887 688888999
Q ss_pred HHHHcCCHH
Q psy11738 201 TYMRLENYE 209 (323)
Q Consensus 201 ~y~~~g~~~ 209 (323)
|+..+|+++
T Consensus 87 CL~~~~D~~ 95 (160)
T PF09613_consen 87 CLYALGDPS 95 (160)
T ss_pred HHHHcCChH
Confidence 999999976
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.091 Score=43.07 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
.++.+.|.+.|.+++.+-|+. ...|+.+|....+.|+.+.|...|++.++++|.+..
T Consensus 8 ~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 578899999999999999987 899999999999999999999999999999888543
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.15 Score=35.95 Aligned_cols=68 Identities=22% Similarity=0.189 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHHHhhCCcc--------hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhh
Q psy11738 253 TSSYEEALKYFLEAEKQHPLF--------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSY 320 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~--------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 320 (323)
.++|.+|++.+.+.++..... ...+...+|.++...|++++|+..+++|+.+.........|..+-..
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 688999988888877664322 12456789999999999999999999999997776666666555433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.4 Score=38.30 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=72.7
Q ss_pred hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHcCCHHHHHHHH
Q psy11738 138 TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH--PLFYSQNVLMLGKTYMRLENYEQAAYYL 215 (323)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 215 (323)
.++..+|..|.+.|+. ++|++.|.++.... |+.....++.+-.+....|++..+..++
T Consensus 37 ~~~~~l~~~~~~~Gd~--------------------~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 37 MALEDLADHYCKIGDL--------------------EEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHHHHHhhhH--------------------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4677899999998877 99999999988863 4433466788888999999999999999
Q ss_pred HHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC
Q psy11738 216 EMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 270 (323)
Q Consensus 216 ~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~ 270 (323)
.++-.+.....+... ...+.++ .++. ....++|.+|-..|..+....
T Consensus 97 ~ka~~~~~~~~d~~~--~nrlk~~-~gL~-----~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 97 EKAESLIEKGGDWER--RNRLKVY-EGLA-----NLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHhccchHHH--HHHHHHH-HHHH-----HHHhchHHHHHHHHHccCcCC
Confidence 999877544322111 0011111 1111 122678999999998776544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.12 E-value=1.1 Score=35.90 Aligned_cols=84 Identities=11% Similarity=0.108 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHH
Q psy11738 120 ETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 196 (323)
Q Consensus 120 ~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 196 (323)
.+|...++.++....+. +.+-..|+++....+.+ ++|++.+...- ++++.+...-
T Consensus 106 d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~--------------------D~AL~~L~t~~--~~~w~~~~~e 163 (207)
T COG2976 106 DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA--------------------DAALKTLDTIK--EESWAAIVAE 163 (207)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH--------------------HHHHHHHhccc--cccHHHHHHH
Confidence 37777888887554332 33566778887776544 88887776543 3333234456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 197 MLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 197 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
..|.++...|+-++|+..|++++..++..
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 68999999999999999999999986443
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.23 Score=42.61 Aligned_cols=57 Identities=19% Similarity=0.123 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CChhHHHHHHHH
Q psy11738 259 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAVQEATKLLEK 316 (323)
Q Consensus 259 Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~~~~~l~~ 316 (323)
|..+|.+|..+.|+. +..+..||.++...|+.=.|+.+|-+++-. .|...+.+-|..
T Consensus 1 A~~~Y~~A~~l~P~~-G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~ 58 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQK 58 (278)
T ss_dssp HHHHHHHHHHH-TTB-SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 678999999999999 799999999999999999999999999977 777666554443
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.6 Score=33.29 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCC
Q psy11738 174 EEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLP 252 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 252 (323)
++|+..|...-+..-+.+ ..+.+..+-+....|+...|+..|..+-...|--...+-.... +-+..+ .+
T Consensus 75 d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl-------raa~lL---vD 144 (221)
T COG4649 75 DDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL-------RAAYLL---VD 144 (221)
T ss_pred hHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH-------HHHHHH---hc
Confidence 889999988877655543 3568888999999999999999999987654432211110000 111122 34
Q ss_pred CCcHHHHHHHHHHHH-hhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 253 TSSYEEALKYFLEAE-KQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~-~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.|.|+.-..-.+... +.+| ....+.-.||.+-++.|++..|..+|.+...
T Consensus 145 ~gsy~dV~srvepLa~d~n~-mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNP-MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCCh-hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 778877665554332 2233 2245677899999999999999999998765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.85 E-value=3.3 Score=37.72 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
|+|.++.-+-.=..++.|. +.++..+|.|++...+|++|-.++..
T Consensus 476 gey~kc~~ys~WL~~iaPS--~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 476 GEYHKCYLYSSWLTKIAPS--PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred ccHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 5679888888888899995 59999999999999999999999975
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.94 Score=42.35 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=87.4
Q ss_pred HHHHHHhhccCCCCcHHHHHHH--HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 78 AYFLVYNALPQHEDHYAIHKWL--AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 78 A~~~~~~al~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++..+...+.++|.+++.+... ...+..++... .+.-.+..++..+|++..+..+||......+..
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~-- 117 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADST----------LAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ-- 117 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccch----------hHHHHHhhhHhcCcccchHHHHHHHHHHHhhhH--
Confidence 5666666677889888875443 44444455443 455678899999999999999999887665433
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHH------HHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM------LGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~------lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
+.-+...-..+....|++ ...... +|.....+|+..++...+++++.+.|.+..
T Consensus 118 -----------------~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 118 -----------------FLALADISEIAEWLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred -----------------HHHHHHHHHHHHhcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 233444444488888887 454444 488899999999999999999999988743
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.5 Score=44.24 Aligned_cols=119 Identities=8% Similarity=0.010 Sum_probs=92.5
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS--EYKED---VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
.+...+.+...+.|+.|+..|+++ .+|+. -++.+++|-+......-... ...+.+|+.-|++... .|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~ 550 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGD------PRDFTQALSEFSYLHG-GVG 550 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCC------hHHHHHHHHHHHHhcC-CCC
Confidence 456677888899999999999998 46554 67889999888776654443 3578999999999654 355
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
-|--|.-.|.+|..++++. +-++++.-|++--|++|..-...-.+.+++.+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 551 APLEYLGKALVYQRLGEYN----------EEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred CchHHHhHHHHHHHhhhHH----------HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 6666777788888888888 77889999999999999987776666666543
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.9 Score=39.60 Aligned_cols=171 Identities=12% Similarity=0.062 Sum_probs=100.0
Q ss_pred hccHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC---cHHHHHH
Q psy11738 27 EQQFEEVNKMLESS-----EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED---HYAIHKW 98 (323)
Q Consensus 27 ~~~~~~A~~~~~~~-----~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 98 (323)
.|++.+|+..+..+ +.|...=+..--+.+.+-+|.+.-+ .+-++.|...|..|+++-.+ .+-+..+
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s------v~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS------VNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh------cchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 68999998777654 4555322222333444444444333 33556677777776655322 2334466
Q ss_pred HHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh---HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHH
Q psy11738 99 LAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST---TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEE 175 (323)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~---~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
+|+.|...++.+ .+++-.=.+.|.|.. .....|.+++-.|-+...+ +++.|
T Consensus 410 lAi~YL~~~~~e-------------d~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q-------------n~lnE 463 (629)
T KOG2300|consen 410 LAISYLRIGDAE-------------DLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ-------------NDLNE 463 (629)
T ss_pred HHHHHHHhccHH-------------HHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh-------------ccHHH
Confidence 788888877665 223333334555422 2222333333332221111 24499
Q ss_pred HHHHHHHHHhcCCC-c----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhh
Q psy11738 176 ALKYFLEAEKQHPL-F----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229 (323)
Q Consensus 176 A~~~~~~al~~~p~-~----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 229 (323)
|.....+.+++..- + .+-.+..||.+..-.|+..++.+..+-++.+..+.++..
T Consensus 464 aK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 464 AKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 99999999997521 1 113466789999999999999999999988876665543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.6 Score=32.82 Aligned_cols=109 Identities=9% Similarity=-0.029 Sum_probs=84.2
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.+..++..+..-...++..++..++..+ ..|..++....-|..+...|+ +.+|+..++.+.+..|
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~-------------w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGD-------------WDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCC-------------HHHHHHHHHHHhccCC
Confidence 3445677777777888999999999877 599999998888888887774 5679999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
..+-+--.++.|+..+++... ..+...+++..| ++.+......+
T Consensus 76 ~~p~~kALlA~CL~~~~D~~W-----------r~~A~evle~~~-d~~a~~Lv~~L 119 (160)
T PF09613_consen 76 GFPYAKALLALCLYALGDPSW-----------RRYADEVLESGA-DPDARALVRAL 119 (160)
T ss_pred CChHHHHHHHHHHHHcCChHH-----------HHHHHHHHhcCC-ChHHHHHHHHH
Confidence 999998999999999999873 123555666664 55555444433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.14 Score=26.46 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLE 216 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~ 216 (323)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 567889999999999999999876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.36 Score=44.44 Aligned_cols=88 Identities=16% Similarity=0.015 Sum_probs=73.6
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.++.+|.+++...|.....+-+.+.++...+=. ++--.|+...-.|++++|.. ..+++.|+.
T Consensus 392 ~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-----------------~d~~~AlrDch~Alrln~s~-~kah~~la~ 453 (758)
T KOG1310|consen 392 GAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-----------------GDSYLALRDCHVALRLNPSI-QKAHFRLAR 453 (758)
T ss_pred HHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-----------------ccHHHHHHhHHhhccCChHH-HHHHHHHHH
Confidence 577889999999999988888888776654311 23367899999999999996 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++..++++.+|+++...+.-..|.+.
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 99999999999999988888888654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.14 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
...+.+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4578999999999999999988753
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=93.24 E-value=7.5 Score=36.65 Aligned_cols=174 Identities=13% Similarity=-0.017 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc-CCCChhHHHHHhhHHH
Q psy11738 70 DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL-KPDDSTTLFMLGMWCF 148 (323)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l-~p~~~~~~~~lg~~~~ 148 (323)
.+.|.+......+++++--.....+.|..++..+...|+.. -+...+.++.++ .|+.+..+..-+.+.-
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~----------~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVS----------LANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchh----------HHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 35677888899999998888888888888888888887776 333344445444 4667777777777776
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHH---HHHHHhCCCCCC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY---YLEMTKNYPVKQ 225 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~---~~~~al~~~~~~ 225 (323)
..|++ ..|...+++..+--|+. ..+-..-....++.|+.+.+.. .+.....--.+.
T Consensus 378 ~~~n~--------------------~~A~~~lq~i~~e~pg~-v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~ 436 (577)
T KOG1258|consen 378 SNGNF--------------------DDAKVILQRIESEYPGL-VEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENN 436 (577)
T ss_pred hhccH--------------------HHHHHHHHHHHhhCCch-hhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCc
Confidence 66655 99999999999888997 5766667778889999988883 333333221111
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHH
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 285 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y 285 (323)
... ........++... -.++.+.|...+..+.+..|++ ...+..+-...
T Consensus 437 ~i~-~~l~~~~~r~~~~---------i~~d~~~a~~~l~~~~~~~~~~-k~~~~~~~~~~ 485 (577)
T KOG1258|consen 437 GIL-EKLYVKFARLRYK---------IREDADLARIILLEANDILPDC-KVLYLELIRFE 485 (577)
T ss_pred chh-HHHHHHHHHHHHH---------HhcCHHHHHHHHHHhhhcCCcc-HHHHHHHHHHH
Confidence 110 0111111121111 1567889999999999999987 45544444433
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.12 Score=29.59 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
..+..||.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 457889999999999999999999998763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.2 Score=38.16 Aligned_cols=58 Identities=16% Similarity=-0.008 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
+++.|+.+.+..+.++|++ +.-+.-.|.+|.++|.+..|..-++.-+...|+++....
T Consensus 196 ~~~~AL~~~e~ll~l~P~d-p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 196 QMELALRASEALLQFDPED-PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred cHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3488888888888888887 466777888888888888888888888888888765543
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=92.73 E-value=7.7 Score=36.52 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=89.8
Q ss_pred CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--------------CCCchh--HHHH
Q psy11738 133 KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--------------HPLFYS--QNVL 196 (323)
Q Consensus 133 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------------~p~~~~--~~~~ 196 (323)
.|-+......++.++..+|+......-+ +.|+=.|+.++.- .|.|.. .+++
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLi-------------eR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~ 346 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLI-------------ERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF 346 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHH-------------HHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH
Confidence 3556778888899888888875554444 5666666666642 233210 1222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhCCCCC-CchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHH-----HHhhC
Q psy11738 197 MLGKTYMRLENYEQAAYYLEMTKNYPVK-QDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLE-----AEKQH 270 (323)
Q Consensus 197 ~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~-----a~~~~ 270 (323)
..-..+.+.|-+..|.++++-.++++|. ++....+.+.-.+.. ..+|.=-|+.+.. .+.+-
T Consensus 347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr-------------areYqwiI~~~~~~e~~n~l~~~ 413 (665)
T KOG2422|consen 347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR-------------AREYQWIIELSNEPENMNKLSQL 413 (665)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH-------------HHhHHHHHHHHHHHHhhccHhhc
Confidence 2334467889999999999999999998 543322111100000 1223222333222 24556
Q ss_pred CcchhhhhHHHHHHHHHhcC---HHHHHHHHHHhhCCCCh
Q psy11738 271 PLFYSQNVLMLGKTYMRLEN---YEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 271 p~~~~~~~~~lg~~y~~~g~---~~~A~~~~~~al~~~~~ 307 (323)
|++ + .-..||..|..... .+.|...+.+|+.+.|.
T Consensus 414 PN~-~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 414 PNF-G-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred CCc-h-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 765 2 23567888887776 57799999999999884
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.49 Score=48.13 Aligned_cols=174 Identities=14% Similarity=0.174 Sum_probs=106.2
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHH------HHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNK------MLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~------~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
......++.+...+.+|.+++|+. ++... .+|.....+.-+++.+..+++...+ ...-.+|.-..
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~A------i~~~~ka~ii~ 1003 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEA------IAQQRKACIIS 1003 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHH------HHhcccceeee
Confidence 456678889999999999998888 55533 4888888889999999988875431 22223333344
Q ss_pred HhhccCC-CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--------CCCChhHHHHHhhHHHHhcCC
Q psy11738 83 YNALPQH-EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--------KPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 83 ~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--------~p~~~~~~~~lg~~~~~~~~~ 153 (323)
++.+..+ |+....+.+++.......+.. .|...+.++..+ .|.-.....+++.+++.++++
T Consensus 1004 eR~~g~ds~~t~~~y~nlal~~f~~~~~~----------~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1004 ERVLGKDSPNTKLAYGNLALYEFAVKNLS----------GALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred chhccCCCHHHHHHhhHHHHHHHhccCcc----------chhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH
Confidence 4444444 444455566665555555444 233333333332 344444556677776665544
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
+.|+++.+.|+.+.... ....+..++....-++++..|+.+.+....+
T Consensus 1074 --------------------d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1074 --------------------DTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred --------------------HHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 78888888887753221 1234555667777777777777666655443
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=92.62 E-value=8.8 Score=35.81 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=55.8
Q ss_pred CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q psy11738 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 266 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a 266 (323)
++++..-.++.+|.+++.+|+...|..+|...+.... .
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~------------------------------------------~ 481 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKES------------------------------------------K 481 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------------------------------------h
Confidence 4444334577789999999999999999887764200 0
Q ss_pred HhhCCcchhhhhHHHHHHHHHhcC-HHHHHHHHHHhhCCCChhHH
Q psy11738 267 EKQHPLFYSQNVLMLGKTYMRLEN-YEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 267 ~~~~p~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~ 310 (323)
...+|-..|.+++.||..|..+|. ..++..++.+|-+-..+-+.
T Consensus 482 ~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~l 526 (546)
T KOG3783|consen 482 RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYEL 526 (546)
T ss_pred hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccch
Confidence 111222235678888888888888 88888888888776644333
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=92.42 E-value=21 Score=39.56 Aligned_cols=52 Identities=15% Similarity=0.033 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CCh
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAV 307 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~ 307 (323)
.|+++.|-.+...|.+..+ +.++...|...+.+|+...|+..+++.++. .|+
T Consensus 1683 aG~~q~A~nall~A~e~r~---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESRL---PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cccHHHHHHHHHhhhhccc---chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 6899999999999998885 567899999999999999999999999965 444
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.3 Score=34.41 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHhcC-----CC---chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 171 SSYEEALKYFLEAEKQH-----PL---FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~-----p~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|..|++.+.+.+... +. ....+.+++|.+....|++++|+..+++|+++.....+.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 56688877777766542 11 123678889999999999999999999999986555443
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.6 Score=40.17 Aligned_cols=89 Identities=15% Similarity=0.048 Sum_probs=73.5
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.....|.+|..--+.|...|.....++...+.+ .+--+.|.+++..+|++ +..|..-+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~--------------------~~v~ki~~~~l~~Hp~~-~dLWI~aA~ 147 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTY--------------------GEVKKIFAAMLAKHPNN-PDLWIYAAK 147 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcch--------------------hHHHHHHHHHHHhCCCC-chhHHhhhh
Confidence 344678999999999999998887766655433 77788999999999998 798988888
Q ss_pred HHHHcCC-HHHHHHHHHHHhCCCCCCchhhh
Q psy11738 201 TYMRLEN-YEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 201 ~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
-....+. .+.|...+.+++..+|+++....
T Consensus 148 wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 148 WEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred hHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 8777777 99999999999999999975433
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.4 Score=27.06 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHhCCCCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYY--LEMTKNYPVK 224 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~--~~~al~~~~~ 224 (323)
+.++.+|..+..+|++++|++. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4577889999999999999999 5476666554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=91.44 E-value=1.5 Score=39.41 Aligned_cols=77 Identities=10% Similarity=0.029 Sum_probs=55.3
Q ss_pred hHHHhhccHHHHHHHHHhC---CCCCCH--H--------HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 22 DDLFEEQQFEEVNKMLESS---EYKEDV--E--------IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 22 ~~~~~~~~~~~A~~~~~~~---~~~~~~--~--------~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
..-...|+|..|++++.+- ..|..+ + +--++..||..+++. +-|+....+.+.+
T Consensus 191 ~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp-------------dlALnh~hrsI~l 257 (569)
T PF15015_consen 191 KYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKP-------------DLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC-------------chHHHHHhhhhhc
Confidence 3333456666777777663 232221 1 123677788777754 4489999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccc
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEG 111 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~ 111 (323)
+|.+..-|.+.+.+...+.+|.+
T Consensus 258 nP~~frnHLrqAavfR~LeRy~e 280 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLERYSE 280 (569)
T ss_pred CcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999884
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.8 Score=41.01 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchh
Q psy11738 196 LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS 275 (323)
Q Consensus 196 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~ 275 (323)
.+-+.-..+..+|..++++|...+..-|.+.....+. -..+.++.++++ ..+.+.|.+++..|-+.+|.. +
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~Fa-----K~qR~l~~CYL~---L~QLD~A~E~~~EAE~~d~~~-~ 428 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFA-----KIQRALQVCYLK---LEQLDNAVEVYQEAEEVDRQS-P 428 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHH-----HHHHHHHHHHhh---HHHHHHHHHHHHHHHhhcccc-H
Confidence 3345557888999999999999999888886554431 233444444444 567899999999999999987 6
Q ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 276 QNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 276 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
-..+.+-.+....|.-++|..+.......
T Consensus 429 l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 429 LCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 77788888889999999999988777655
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.3 Score=27.92 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
.++..||.+-...++|++|+.-|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PHA02537 M terminase endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=1.3 Score=36.84 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHH---------HhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhhc
Q psy11738 275 SQNVLMLGKTYM---------RLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYLK 322 (323)
Q Consensus 275 ~~~~~~lg~~y~---------~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~~ 322 (323)
+..+-.+|..+. ..++...|..++++|+.++|+...+..++++.+.|+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr 225 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHh
Confidence 345666777773 456788999999999999999999988888887775
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.86 E-value=3.1 Score=31.96 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=57.7
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
++...++..--+.|+.++....-|.++...|++ .+|+..|....+-.+.. +.+.-.++.
T Consensus 28 D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w--------------------~eA~rvlr~l~~~~~~~-p~~kAL~A~ 86 (153)
T TIGR02561 28 DAQAMLDALRVLRPNLKELDMFDGWLLIARGNY--------------------DEAARILRELLSSAGAP-PYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHhCCCccccchhHHHHHHHcCCH--------------------HHHHHHHHhhhccCCCc-hHHHHHHHH
Confidence 455566666678999999999999999998876 99999999999977775 677788899
Q ss_pred HHHHcCCHHH
Q psy11738 201 TYMRLENYEQ 210 (323)
Q Consensus 201 ~y~~~g~~~~ 210 (323)
|+.-+||.+-
T Consensus 87 CL~al~Dp~W 96 (153)
T TIGR02561 87 CLNAKGDAEW 96 (153)
T ss_pred HHHhcCChHH
Confidence 9999999763
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=90.34 E-value=11 Score=32.27 Aligned_cols=90 Identities=18% Similarity=0.115 Sum_probs=50.2
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLE-------SSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~-------~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
+-+..-+..+++.|++.-|.++.. +...+.+.+..-++.++......-. .++......|+.+. +.-.
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~-----p~r~~fi~~ai~WS-~~~~ 84 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE-----PERKKFIKAAIKWS-KFGS 84 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT------TTHHHHHHHHHHHH-HTSS
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc-----chHHHHHHHHHHHH-ccCC
Confidence 334556666677777777754332 2245556666667777666665322 23566777788777 4444
Q ss_pred CCCCcHHHHHHHHHHHHHhhccc
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
-.-.+++.|..+|..+...+++.
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~ 107 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYY 107 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HH
T ss_pred CCCCCHHHHHHHHHHHHhhccHH
Confidence 44457778888888887777665
|
; PDB: 3LKU_E 2WPV_G. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=4.1 Score=37.50 Aligned_cols=124 Identities=10% Similarity=-0.005 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
..|+..-|-+-...++...|.. +..-...+.+...+|+|+.+...+.-+-..-.....+.. +. ...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~-p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~-------~~----~r~-- 366 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQD-PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLR-------CR----LRS-- 366 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCC-chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHH-------HH----HHh--
Confidence 4466677777888888888887 566667789999999999998876544332111111100 00 111
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
....+++++|+......+.-.-+. +.+...-+..-..+|-+++|..+|++.+.++|..
T Consensus 367 -~~~l~r~~~a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 367 -LHGLARWREALSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred -hhchhhHHHHHHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 123577888887776666554444 3433333444556777788888888888886663
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.22 E-value=10 Score=35.78 Aligned_cols=124 Identities=10% Similarity=-0.076 Sum_probs=80.8
Q ss_pred HHHHHHHHHccCCCChhHHHHH--hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFML--GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~l--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg 199 (323)
++..+...+.++|.++..+... ....... ++...++-.+..++..+|++ +.+..+|+
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~--------------------~~~~~~~~~~~~~l~~~~~~-~~~~~~L~ 108 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPL--------------------ADSTLAFLAKRIPLSVNPEN-CPAVQNLA 108 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhcccc--------------------ccchhHHHHHhhhHhcCccc-chHHHHHH
Confidence 3445666777888888764332 3322222 34478899999999999998 79999999
Q ss_pred HHHHHcCCHHHHHHH-HHHHhCCCCCCchhhhhh--hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhh
Q psy11738 200 KTYMRLENYEQAAYY-LEMTKNYPVKQDKDQCFE--ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ 276 (323)
Q Consensus 200 ~~y~~~g~~~~A~~~-~~~al~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~ 276 (323)
......|..-.+... .+.+....|.+....... +..++-+.+ . .++-.++.....++.++.|.+ ++
T Consensus 109 ~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~---l~~~~~~~~~l~~~~d~~p~~-~~ 177 (620)
T COG3914 109 AALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK-------L---LGRTAEAELALERAVDLLPKY-PR 177 (620)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH-------H---hccHHHHHHHHHHHHHhhhhh-hh
Confidence 998877776665554 555888888876543321 111111111 1 456677777888888888876 44
Q ss_pred h
Q psy11738 277 N 277 (323)
Q Consensus 277 ~ 277 (323)
.
T Consensus 178 ~ 178 (620)
T COG3914 178 V 178 (620)
T ss_pred h
Confidence 3
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.87 Score=39.03 Aligned_cols=62 Identities=10% Similarity=-0.130 Sum_probs=51.1
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH
Q psy11738 78 AYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 78 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~ 149 (323)
|..+|.+|+.+.|.+...|.++|.+....++.- .|.=+|-|++-...-.+.+..+|...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l----------~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDL----------DAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HH----------HHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 688999999999999999999999999988877 78888999998766668888888887766
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.81 Score=39.44 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH-HHHhcCCcHHHHH
Q psy11738 81 LVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW-CFEITDMPWYQRK 159 (323)
Q Consensus 81 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~-~~~~~~~~~~~~~ 159 (323)
.+.++....|.++..|..++......+.+. +....|..++..+|.|.+.|..-+.. +...+++
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~----------~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani------ 158 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYG----------EMKNIFAECLTKHPLNVDLWIYCCAFELFEIANI------ 158 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhcCCCCceeeeeeccchhhhhccH------
Confidence 345556667888888777666555555444 56677999999999999998774432 3334443
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHH
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV 195 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 195 (323)
+.+...|.++++++|++ +..|
T Consensus 159 --------------~s~Ra~f~~glR~N~~~-p~iw 179 (435)
T COG5191 159 --------------ESSRAMFLKGLRMNSRS-PRIW 179 (435)
T ss_pred --------------HHHHHHHHhhhccCCCC-chHH
Confidence 99999999999999997 5543
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=89.54 E-value=12 Score=31.76 Aligned_cols=181 Identities=8% Similarity=-0.021 Sum_probs=120.6
Q ss_pred HHHhhhHHHh----hc-cHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 17 FLKKSDDLFE----EQ-QFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 17 ~~~~a~~~~~----~~-~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
-|.++..+|+ .+ .-..|+.+...+ ..|.+-.+|--.-.+...++. .+.+-+.++...++-+
T Consensus 41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~------------dL~~El~~l~eI~e~n 108 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS------------DLNKELEYLDEIIEDN 108 (318)
T ss_pred hHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHhC
Confidence 3444444443 34 345677777765 477776665444444444442 3556799999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH----HHHHhh
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK----IANAIF 165 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~----~~~~~~ 165 (323)
|+|-.++.+.-.+...+|++.+ .-.+....++..+..|..+|...-.++...+.+...... +..-++
T Consensus 109 pKNYQvWHHRr~ive~l~d~s~---------rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~ 179 (318)
T KOG0530|consen 109 PKNYQVWHHRRVIVELLGDPSF---------RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR 179 (318)
T ss_pred ccchhHHHHHHHHHHHhcCccc---------chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998774 234678889999999999999988888877765322221 111111
Q ss_pred cC----------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-cC--CHHHHHHHHHHHh
Q psy11738 166 DT----------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR-LE--NYEQAAYYLEMTK 219 (323)
Q Consensus 166 ~~----------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~-~g--~~~~A~~~~~~al 219 (323)
.+ .+...-+.-+.+..+.+.+.|++ ..+|..|..++.. .| .+...........
T Consensus 180 NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~N-eSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 180 NNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNN-ESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred ccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 11 11123466778888899999998 6899999888876 44 1334444444444
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=89.29 E-value=4.7 Score=36.45 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=63.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCC-CCchhh-hhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPV-KQDKDQ-CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ 276 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~ 276 (323)
+..-...|+|..|++.+.+...+.. ...... ...+ ..|+.-++..+++. +++-+-|+.+-.+.+-++|.+ ..
T Consensus 190 k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~v--aSfIetklv~CYL~---~rkpdlALnh~hrsI~lnP~~-fr 263 (569)
T PF15015_consen 190 KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSV--ASFIETKLVTCYLR---MRKPDLALNHSHRSINLNPSY-FR 263 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHH--HHHHHHHHHHhhhh---cCCCchHHHHHhhhhhcCcch-hh
Confidence 3333445556666666665544432 222111 1122 22445555555554 677889999999999999988 68
Q ss_pred hhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 277 NVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 277 ~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
.++.-|.|+..+.+|.+|..-+.-|
T Consensus 264 nHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 264 NHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999987655444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=88.72 E-value=1.3 Score=24.43 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=25.8
Q ss_pred cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 186 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 186 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
+.|+ ..+|..|-..|.+.|+.++|.+.+++
T Consensus 3 ~~Pd--~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPD--VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCc--HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3576 37799999999999999999999875
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=88.59 E-value=3.4 Score=42.48 Aligned_cols=122 Identities=20% Similarity=0.180 Sum_probs=81.3
Q ss_pred HHHHHHHh-hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-CCChhHHHHHhhHHHHhcCCc
Q psy11738 77 SAYFLVYN-ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-PDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 77 ~A~~~~~~-al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p~~~~~~~~lg~~~~~~~~~~ 154 (323)
+++.++.. --.+.|..+..+..++.++..+++..++ +.....|.-..++.+-++ |+....+-+++.+.+..++.
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~A---i~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~- 1031 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEA---IAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNL- 1031 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHH---HHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCc-
Confidence 44446663 3356788899999999999999988721 111112222233444444 34556677777777766654
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
..|+..+.+++.+ .|.- +....+++.++...++++.|+.+++.|++..
T Consensus 1032 -------------------~~al~~~~ra~~l~~Ls~ge~hP~~-a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1032 -------------------SGALKSLNRALKLKLLSSGEDHPPT-ALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred -------------------cchhhhHHHHHHhhccccCCCCCch-hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5666666666654 4442 3556789999999999999999999999854
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.11 E-value=13 Score=30.25 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=44.9
Q ss_pred CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHcCCHHHH
Q psy11738 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~y~~~g~~~~A 211 (323)
++++..+.||.+|... +. ++|+..+.+++++.+.+ .+.++..|+.+|..+|+++.|
T Consensus 139 ~t~elq~aLAtyY~kr-D~--------------------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYTKR-DP--------------------EKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHcc-CH--------------------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 5788888999776543 33 99999999999984332 257899999999999999877
Q ss_pred H
Q psy11738 212 A 212 (323)
Q Consensus 212 ~ 212 (323)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 3
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.11 E-value=0.92 Score=26.89 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 195 VLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 195 ~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
.+.|+.+|..+|+.+.|.+.++..+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46799999999999999999999985
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.88 Score=25.63 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHhcCHHHHHHH--HHHhhCCCCh
Q psy11738 277 NVLMLGKTYMRLENYEQAAYY--LEMTKNYPAV 307 (323)
Q Consensus 277 ~~~~lg~~y~~~g~~~~A~~~--~~~al~~~~~ 307 (323)
.++.+|..+..+|++++|+.. |.-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 467788888889999999988 4466555543
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.5 Score=37.11 Aligned_cols=65 Identities=15% Similarity=0.064 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAK 318 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~ 318 (323)
.++++.|+....+.+.++|++ +.-+--.|.+|..+|-+.-|+..+...++.-|++...++++...
T Consensus 194 e~~~~~al~~~~r~l~l~P~d-p~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 194 ELQWELALRVAERLLDLNPED-PYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred hhchHHHHHHHHHHHhhCCCC-hhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 578999999999999999998 66678899999999999999999999999988888877776543
|
|
| >PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=87.94 E-value=20 Score=32.35 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=36.9
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc-cCCCC
Q psy11738 31 EEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL-PQHED 91 (323)
Q Consensus 31 ~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~ 91 (323)
.+|...+.-- .....+++....+.+|..+.-+..+ .+.+......=+..++..+ .++|.
T Consensus 155 ~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~--~~r~~kmhkRR~d~Le~~~~~Ln~~ 215 (371)
T PF12309_consen 155 NKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEED--PDRQIKMHKRRADLLEPLLKELNPQ 215 (371)
T ss_pred HHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 4444444332 2445677888889999999888775 5555555566666666665 34443
|
Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein. |
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=87.89 E-value=6.6 Score=37.46 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=66.5
Q ss_pred HHhHHHHHHHHHHHHccCCCChh------HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC
Q psy11738 116 IQQLETIKHHMNKAIELKPDDST------TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 189 (323)
Q Consensus 116 ~~~~~~a~~~~~~al~l~p~~~~------~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 189 (323)
+.++..+++.|...+.--|.|.. ....|..+|....++ +.|.+++++|-+.+|.
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL--------------------D~A~E~~~EAE~~d~~ 426 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL--------------------DNAVEVYQEAEEVDRQ 426 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH--------------------HHHHHHHHHHHhhccc
Confidence 34555889999999998887643 244455566665544 9999999999999999
Q ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 190 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 190 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
+ +..-+.+..+....|.-++|+.+..+..+.
T Consensus 427 ~-~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 427 S-PLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred c-HHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 7 577777888888999999999998887765
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=87.78 E-value=25 Score=33.30 Aligned_cols=177 Identities=12% Similarity=-0.004 Sum_probs=112.5
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESSE--YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
.+..+.....+..-.+.....|+++....+++++- =....++|++.++-....|+... |-..+.+
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~-------------~~~~~~~ 356 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSL-------------ANNVLAR 356 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhH-------------HHHHHHh
Confidence 34455566667777788888999999999999873 34567899999987777765543 3333444
Q ss_pred hccC-CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 85 ALPQ-HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 85 al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
+.++ .|+.+..+...+.+....|++. .|+..+++...--|+...+-..-..+....|+.
T Consensus 357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~----------~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~---------- 416 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARFEESNGNFD----------DAKVILQRIESEYPGLVEVVLRKINWERRKGNL---------- 416 (577)
T ss_pred hhhhcCCCCcHHHHHHHHHHHhhccHH----------HHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch----------
Confidence 4443 4667777777676666666666 777888888887788777766666666666655
Q ss_pred hhcCCCCCCHHHHH---HHHHHHHhc--CCCchhHHHHHHH-HHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 164 IFDTLPTSSYEEAL---KYFLEAEKQ--HPLFYSQNVLMLG-KTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 164 ~~~~~~~~~~~~A~---~~~~~al~~--~p~~~~~~~~~lg-~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
+.+. ..+.....- +++-....+...+ ..+.-.++.+.|...+.+++...|.+.
T Consensus 417 ----------~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 417 ----------EDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK 475 (577)
T ss_pred ----------hhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH
Confidence 3333 222222221 1211011122222 224556778888888888888887764
|
|
| >COG4259 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.46 E-value=2.3 Score=30.05 Aligned_cols=53 Identities=19% Similarity=0.083 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
..-.+.++++-..+-..++-.+-.||..|.+.|+.+.|...|+.-..+.|.+.
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 44455666666655544456688999999999999999999999999988764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.09 E-value=12 Score=28.81 Aligned_cols=75 Identities=7% Similarity=0.027 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
.+++...+...--+.|+.++....-|.++...|++. +|...|.....-.|..+.+.-.++.|++-+++..
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~----------eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYD----------EAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHH----------HHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 345666666666788999999999999999999999 8999999998888888988899999999999887
Q ss_pred HHHHH
Q psy11738 155 WYQRK 159 (323)
Q Consensus 155 ~~~~~ 159 (323)
|-...
T Consensus 96 Wr~~A 100 (153)
T TIGR02561 96 WHVHA 100 (153)
T ss_pred HHHHH
Confidence 65443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=87.07 E-value=7.4 Score=32.68 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-ChhHHHHHhhHH
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-DSTTLFMLGMWC 147 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~~~~~~~lg~~~ 147 (323)
+..++.+....++++ +...++++++..+|+ +.+-...+..+|
T Consensus 4 li~~Aklaeq~eRy~----------dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 4 LIYLAKLAEQAERYD----------DMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHTTHHH----------HHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHH----------HHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 355677777777777 888899999999876 334444555444
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=86.88 E-value=5.4 Score=26.70 Aligned_cols=29 Identities=10% Similarity=-0.053 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVIL 103 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 103 (323)
|.+|++.+.+++...|+++........+.
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~ 57 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMIN 57 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44478888888888888776544444433
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.59 E-value=3.7 Score=35.28 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC-------CCChhHHHHHHHHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN-------YPAVQEATKLLEKA 317 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-------~~~~~~~~~~l~~~ 317 (323)
.++++.++..+++.+..+|-+ ...|..+-.+|...|+...|+..|++.-. +.|..+......++
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~-E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYD-EPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred cccHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 578999999999999999988 78999999999999999999998887655 46666666665554
|
|
| >cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=86.28 E-value=8.1 Score=26.05 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=17.2
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
..+..++.+|...=..|+|++|+.+|..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~ 31 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQE 31 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3445566666666666777777654444
|
This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear. |
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=86.21 E-value=3.9 Score=34.74 Aligned_cols=47 Identities=19% Similarity=0.120 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 174 EEALKYFLEAEKQHPLFYS---QNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~---~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|+..|++++++.|.--. .++-.+-.++.++|++++..+.|++.+.
T Consensus 44 ~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 44 KEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 8999999999999876311 4566677888999999998888887764
|
|
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=85.86 E-value=12 Score=33.71 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC--CCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPV--KQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 270 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~ 270 (323)
..|+.+..+|...|+...-...+...+.... ++... ...+ +.|.. ..+ ...+.|+.|-....++.--+
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~-qavL--iN~LL----r~y---L~n~lydqa~~lvsK~~~pe 239 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEG-QAVL--INLLL----RNY---LHNKLYDQADKLVSKSVYPE 239 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchh-HHHH--HHHHH----HHH---hhhHHHHHHHHHhhcccCcc
Confidence 5688889999999997776666665554321 11111 1111 11111 111 22455777766665544111
Q ss_pred ---CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy11738 271 ---PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAK 318 (323)
Q Consensus 271 ---p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~ 318 (323)
.+.+++..+++|.+-.-.++|..|.+++.+|+...|++.+--..+.+.
T Consensus 240 ~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~ 290 (493)
T KOG2581|consen 240 AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVN 290 (493)
T ss_pred ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHH
Confidence 112356789999999999999999999999999999855544444443
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=85.04 E-value=36 Score=32.35 Aligned_cols=173 Identities=16% Similarity=0.116 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhcc------------CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--CCCChh-
Q psy11738 74 LILSAYFLVYNALP------------QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--KPDDST- 138 (323)
Q Consensus 74 ~~~~A~~~~~~al~------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--~p~~~~- 138 (323)
-|++|...|.-|+. -.|.+.+.+..++.+....|+.+.+...++ .++=.|++++.- .|....
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLie---R~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIE---RGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHH---HHHHHHHHHhccccccccccc
Confidence 35666666655543 357788889999999999999885555444 444456666642 122111
Q ss_pred ---------HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHcCCH
Q psy11738 139 ---------TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-FYSQNVLMLGKTYMRLENY 208 (323)
Q Consensus 139 ---------~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~y~~~g~~ 208 (323)
-.++|+.+-+... ....|=+.-|.++.+-.++++|. ++.-+.+.+-....+..+|
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~---------------l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareY 394 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQS---------------LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREY 394 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHH---------------HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhH
Confidence 1222222211110 00113348999999999999999 6333344455555788888
Q ss_pred HHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 209 EQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 209 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
.--|+.++..-..+.-. .+-++ .|...+|..++.......-..|+..+.+|+...|
T Consensus 395 qwiI~~~~~~e~~n~l~------~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 395 QWIIELSNEPENMNKLS------QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHhhccHh------hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 88888887763321100 00000 1222233333332222246678888888888877
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=84.90 E-value=40 Score=32.88 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
.++.++|..+..+..+++|.++|...
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777777777777777777777654
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=84.84 E-value=5.6 Score=30.37 Aligned_cols=52 Identities=10% Similarity=0.143 Sum_probs=42.2
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSS 65 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~ 65 (323)
...++..+...+..|+|+-|..+++.+ -+|+|.++....+.+|..+|....+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 456788999999999999999999987 5999999999999999999876554
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=84.81 E-value=15 Score=37.42 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHH---HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYA---IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
....|+.|+..|++...--|...+ +.+..|+.+.....-.+.. ....+|...|++.. -.|.-|.-|...+.+|
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP---RDFTQALSEFSYLH-GGVGAPLEYLGKALVY 562 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh---HHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence 456799999999999999988765 5577788777665544332 23446666666543 3456666677777788
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY 191 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 191 (323)
++++++ ++-+++|..|++.-|.++
T Consensus 563 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 563 QRLGEY--------------------NEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHhhhH--------------------HHHHHHHHHHHHhcCCCC
Confidence 888765 999999999999988873
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=84.74 E-value=16 Score=40.32 Aligned_cols=151 Identities=14% Similarity=0.131 Sum_probs=97.2
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
.....+-+++.|......|+++.|...+-++.+..-+++....|+..+..|+. ..|+..++..++++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~-------------~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDE-------------LNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccH-------------HHHHHHHHHHHHhh
Confidence 44556677888888888999999998888875555777888888888877754 44888888888654
Q ss_pred -CC----------cHH------HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 90 -ED----------HYA------IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 90 -p~----------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
|+ ... +...++......++++ .......|..+.++.|.....++.+|..+-..-.
T Consensus 1733 ~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~--------s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~ 1804 (2382)
T KOG0890|consen 1733 FPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFE--------SKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLE 1804 (2382)
T ss_pred cccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchh--------HHHHHHHHHHHHHHcccccCceeeHHHHHHHHhh
Confidence 22 111 2223333444444433 2356688999999999999999999965432210
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHH---HHHHHHHHHhcCCC
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEE---ALKYFLEAEKQHPL 189 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~al~~~p~ 189 (323)
. . ....+.+.|++.. ++-.|-+++.-...
T Consensus 1805 ~-----~---~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~ 1836 (2382)
T KOG0890|consen 1805 D-----Y---KSNKMEKSGRVLSLLKAIYFFGRALYYGNQ 1836 (2382)
T ss_pred h-----h---hcccccccccHHHHHHHHHHHHHHHHhcch
Confidence 0 0 0011224455555 66677777775444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.31 E-value=21 Score=29.06 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHhcCHHHHH
Q psy11738 275 SQNVLMLGKTYMRLENYEQAA 295 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~ 295 (323)
+.++..|+.+|..+|+++.|-
T Consensus 178 ~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHHHhcchhhhh
Confidence 466888899999999998874
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=84.23 E-value=47 Score=33.05 Aligned_cols=110 Identities=20% Similarity=0.284 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhhccCCCC-cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc-CCCChhHHHHHhhHHH
Q psy11738 71 KKQLILSAYFLVYNALPQHED-HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL-KPDDSTTLFMLGMWCF 148 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l-~p~~~~~~~~lg~~~~ 148 (323)
++..|.-|+...+.- ..+|+ -.+.+..+|..++..|++. +|...|-+.|.. +|...--.+ .
T Consensus 346 kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~----------~A~~qYI~tI~~le~s~Vi~kf------L 408 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFD----------EATDQYIETIGFLEPSEVIKKF------L 408 (933)
T ss_pred HhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHHHHcccCChHHHHHHh------c
Confidence 577788899888764 33333 4557788899999999998 777777777753 332111111 0
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
... .| .+-..+++...+..=.+ .+--..|-.||.++++.++-.++.++.
T Consensus 409 daq-------~I-------------knLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 409 DAQ-------RI-------------KNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred CHH-------HH-------------HHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 000 00 23334444444432222 233445678999999988777666543
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=84.14 E-value=2.4 Score=38.48 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHH-------HhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 171 SSYEEALKYFLEA-------EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 171 ~~~~~A~~~~~~a-------l~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
|+|..|++.++-. +..-|.-....++.+|.+|+++++|..|+..|...+.
T Consensus 136 GDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 136 GDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457776665432 2222332246799999999999999999999998865
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=83.88 E-value=11 Score=25.51 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=27.4
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
+|+..+.++++..++.+..+..+|.+.....++
T Consensus 24 ~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~ 56 (80)
T PF10579_consen 24 QALQKWRKALEKITDREDRFRVLGYLIQAHMEW 56 (80)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 788999999999999998888888766555555
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.56 E-value=3.8 Score=35.49 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=65.2
Q ss_pred HHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHH-HHHHHHH
Q psy11738 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM-LGKTYMR 204 (323)
Q Consensus 126 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-lg~~y~~ 204 (323)
|.++-..-|+|+..|...+..-...+ .|.+--..|-.+++.+|.+ ++.|.. -..-|..
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k--------------------~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~ 154 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKK--------------------MYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFE 154 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhh
Confidence 55666677888888877765444433 3477778899999999998 677665 4555788
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
.++++.+...+.+++.++|.++..+.
T Consensus 155 ~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 155 IANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hccHHHHHHHHHhhhccCCCCchHHH
Confidence 99999999999999999999986654
|
|
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=83.39 E-value=22 Score=28.56 Aligned_cols=199 Identities=15% Similarity=0.082 Sum_probs=116.8
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
....++.-.+|+...- -.+.+|++|...|++--+-+. .+..-+.+|..+. .|.-- . -.....
T Consensus 30 ~EK~Pe~C~lLgdYlE------------gi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~-~GKgG-~---~~~l~~ 91 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYLE------------GIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYML-AGKGG-D---DASLSK 91 (248)
T ss_pred ccCCchHHHHHHHHHH------------HHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhh-cccCC-C---ccCHHH
Confidence 3455666555555432 345688999999988776654 4555666665433 22221 0 122237
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
|++.+..+-. .+.+.+..++|.++....-. +. ...+-.+|.+++.++..++.. .+-++|+..
T Consensus 92 a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~----r~---------~dpd~~Ka~~y~traCdl~~~---~aCf~LS~m 153 (248)
T KOG4014|consen 92 AIRPMKIACD--ANIPQACRYLGLLHWNGEKD----RK---------ADPDSEKAERYMTRACDLEDG---EACFLLSTM 153 (248)
T ss_pred HHHHHHHHhc--cCCHHHHhhhhhhhccCcCC----cc---------CCCCcHHHHHHHHHhccCCCc---hHHHHHHHH
Confidence 8888887775 67888999999887653210 00 011248999999999987654 556667666
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCC-chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 202 YMRLENYEQAAYYLEMTKNYPVKQ-DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 202 y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
|+.-. ++ +..-.|.. .+.....+ +.. ..+.+.|+++-.+|-+++- +.+.-+
T Consensus 154 ~~~g~--~k-------~~t~ap~~g~p~~~~~~---~~~-------------~kDMdka~qfa~kACel~~---~~aCAN 205 (248)
T KOG4014|consen 154 YMGGK--EK-------FKTNAPGEGKPLDRAEL---GSL-------------SKDMDKALQFAIKACELDI---PQACAN 205 (248)
T ss_pred Hhccc--hh-------hcccCCCCCCCcchhhh---hhh-------------hHhHHHHHHHHHHHHhcCC---hHHHhh
Confidence 54332 22 22223311 11000011 011 3568899999999998874 455667
Q ss_pred HHHHHHH----hcCHHHHHHHHHHhhCC
Q psy11738 281 LGKTYMR----LENYEQAAYYLEMTKNY 304 (323)
Q Consensus 281 lg~~y~~----~g~~~~A~~~~~~al~~ 304 (323)
+...|.. -.+.++|..+-.+|.++
T Consensus 206 ~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 206 VSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 7776653 23556777777777655
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.21 E-value=6.6 Score=33.75 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
..++++.++..+++.+.++|-+ ...|..+-..|...|+...|+..|++..+.
T Consensus 165 ~~~~~~~~~~~l~~Li~~dp~~-E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 165 ACGRADAVIEHLERLIELDPYD-EPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred hcccHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3467899999999999999998 699999999999999999999999998764
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.98 E-value=21 Score=33.08 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccch
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGT 112 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 112 (323)
+..|-+-...+++..|..|......+.+...+|.+++.
T Consensus 305 ~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~ 342 (831)
T PRK15180 305 IIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQA 342 (831)
T ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHH
Confidence 34444455555666666666656666666666666643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.92 E-value=4.5 Score=37.40 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
+++++.+... +-++-|.-+..-...++..+.+.|-++.|++.. .||+.. +.+ | .
T Consensus 276 d~~~v~~~i~-~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~-----~D~~~r----FeL----------A------l 329 (443)
T PF04053_consen 276 DFEEVLRMIA-ASNLLPNIPKDQGQSIARFLEKKGYPELALQFV-----TDPDHR----FEL----------A------L 329 (443)
T ss_dssp -HHH-----H-HHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS-----S-HHHH----HHH----------H------H
T ss_pred Chhhhhhhhh-hhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc-----CChHHH----hHH----------H------H
Confidence 3455554443 223334432234666788888899888888754 333211 111 0 0
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..|+++.|++..+ ..+. +..|-.||...+..|+++-|.++|.++-+.
T Consensus 330 ~lg~L~~A~~~a~-----~~~~-~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 330 QLGNLDIALEIAK-----ELDD-PEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp HCT-HHHHHHHCC-----CCST-HHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred hcCCHHHHHHHHH-----hcCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 1466777766543 2223 467889999999999999999998887543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.85 E-value=9.6 Score=25.77 Aligned_cols=63 Identities=6% Similarity=0.145 Sum_probs=43.1
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHH---HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVE---IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~---~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
....-+++|-.++.+.+.++|+...+++ +.++..+ ++--+.++|+..| .+++.+.+.-+-++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~G-------------kyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWG-------------KYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 4556788999999999999999999887 3334333 3445567777777 45556666655443
Q ss_pred C
Q psy11738 88 Q 88 (323)
Q Consensus 88 ~ 88 (323)
+
T Consensus 72 ~ 72 (80)
T PF10579_consen 72 I 72 (80)
T ss_pred H
Confidence 3
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=82.28 E-value=29 Score=29.16 Aligned_cols=182 Identities=15% Similarity=0.075 Sum_probs=87.2
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--E-YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~-~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
++++..|......|+|++.+..++++ . ..-+.+-...+..+|.+.- +....+...+.......+.
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i------------~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVI------------GSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcc------------ccchHHHHhhhhHhhhhcc
Confidence 45677788888899999999999886 2 3345666677777775542 1223344444333332222
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH----HHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT----LFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~----~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
.... .....+-........ +-.....+.+...++.+--...+++. +...|.+|.....+..-...-..
T Consensus 70 ~~~~-~~~~~i~~yk~kie~--EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~----- 141 (236)
T PF00244_consen 70 KGNE-KQVKLIKDYKKKIED--ELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEA----- 141 (236)
T ss_dssp TTTH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-----
T ss_pred cchh-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHH-----
Confidence 2110 111111111111110 01112223444444433333334332 22234444333322111111111
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCCchh--HHHHHHH-HHHHHcCCHHHHHHHHHHHhCC
Q psy11738 168 LPTSSYEEALKYFLEAEKQ-----HPLFYS--QNVLMLG-KTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~lg-~~y~~~g~~~~A~~~~~~al~~ 221 (323)
-+.|...|++|+++ .|.++. ...++.+ ..|..+|+.++|++..++|+..
T Consensus 142 -----~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 -----AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred -----HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 17788888888764 666621 1122233 3356699999999999888653
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=82.19 E-value=51 Score=31.95 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=89.8
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhCCCCCCH-HH-----HHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESSEYKEDV-EI-----IWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~-----~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
+.+..|+.+--.|+|.+|-.++.+..+.+.+ +. .|-+++-+...|. +++|+...++--. .|-...
T Consensus 634 ~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~------~~eKKmL~RKRA~---WAr~~k 704 (1081)
T KOG1538|consen 634 NDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGD------PKEKKMLIRKRAD---WARNIK 704 (1081)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCC------hHHHHHHHHHHHH---HhhhcC
Confidence 3455666677788888888888876333321 21 1233443433332 2333333222222 222221
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHH------H
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIAN------A 163 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~------~ 163 (323)
.|.+ .+..+...|+...+..-+.+..=+--.++-+-+++-.+-+....++..+.....++...+.... .
T Consensus 705 --ePka---AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksi 779 (1081)
T KOG1538|consen 705 --EPKA---AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSL 779 (1081)
T ss_pred --CcHH---HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHH
Confidence 1211 1233333444432222111111111124444455555555555555444444433222222111 0
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
.---.+.+++.+|...-++ .|....++|+-.|.-+....+|++|-+.|.+|=+
T Consensus 780 VqlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred hhheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 0001245677877766554 6666556788888888899999999988887633
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=81.65 E-value=4 Score=22.42 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=25.4
Q ss_pred hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 269 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 269 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
+.|+ ..+|..|-..|.+.|+.++|.+.|++
T Consensus 3 ~~Pd--~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPD--VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCc--HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3566 46789999999999999999999875
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=80.66 E-value=44 Score=30.30 Aligned_cols=136 Identities=11% Similarity=0.018 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 68 DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
+.++...+++-+.+...++..+|+.-.+++....++.......- ..-.+.++++++.||.|..+|.+.-.+.
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~--------~~EL~lcek~L~~D~RNfh~W~YRRfV~ 155 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDW--------NTELQLCEKALKQDPRNFHAWHYRRFVV 155 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchH--------HHHHHHHHHHHhcCcccccchHHHHHHH
Confidence 66778889999999999999999999999999999987666521 1345689999999999999988766543
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH------cCC------HHHHHHHH
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR------LEN------YEQAAYYL 215 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~------~g~------~~~A~~~~ 215 (323)
-..... .....+=+.+..+++.-++.|+ .+|-+...++.. .|. ...-++..
T Consensus 156 ~~~~~~----------------~~~~~~El~ftt~~I~~nfSNY-saWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v 218 (421)
T KOG0529|consen 156 EQAERS----------------RNLEKEELEFTTKLINDNFSNY-SAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMV 218 (421)
T ss_pred HHHhcc----------------cccchhHHHHHHHHHhccchhh-hHHHHHHHHHHHhccccccCccCCHHHHHHHHHHH
Confidence 322100 0012566788888888898885 777666655541 231 23456777
Q ss_pred HHHhCCCCCCchh
Q psy11738 216 EMTKNYPVKQDKD 228 (323)
Q Consensus 216 ~~al~~~~~~~~~ 228 (323)
..|+=.+|.+...
T Consensus 219 ~saiFTdp~DqS~ 231 (421)
T KOG0529|consen 219 HSAIFTDPEDQSC 231 (421)
T ss_pred HHHHhcCccccce
Confidence 7888888888644
|
|
| >KOG4151|consensus | Back alignment and domain information |
|---|
Probab=80.65 E-value=6.3 Score=38.34 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
+++.....++++.... |....+.+++..+.--|..++.+-|.+............ +.+...+.
T Consensus 44 ~di~v~l~ra~~~~~E---------~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~--------s~~m~~~l 106 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEE---------GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQA--------SCYMQLGL 106 (748)
T ss_pred cchHHHHHHHHHHHhh---------hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHH--------HHHhhcCc
Confidence 3555666666665433 344556677777777788888888865433221111111 11223458
Q ss_pred CcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh-HHHHHHHHHHhhh
Q psy11738 254 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ-EATKLLEKAKSYL 321 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 321 (323)
++|.+++..+.-++...|.. ..+++-.+.+|..+++.+-|++...-.....|.. ++.++..+.+.+|
T Consensus 107 ~~~~~~~~E~~la~~~~p~i-~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 107 GEYPKAIPECELALESQPRI-SKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred cchhhhcCchhhhhhccchH-HHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999998 6888888999999999999999988888887775 4456666665554
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=80.58 E-value=25 Score=30.96 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK 133 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~ 133 (323)
+..+..+-+.....|++++|+-+.++..++.-- ..-..+|...|++|++..
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE------------a~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEE------------ATTIVDAERLFKQALKAG 246 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh------------hhhHHHHHHHHHHHHHHH
Confidence 334445567778888999998877766554211 111225666777777654
|
|
| >PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth [] | Back alignment and domain information |
|---|
Probab=80.39 E-value=2.4 Score=37.87 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=46.2
Q ss_pred hccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 27 EQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 27 ~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
..-+..|+..++++.+.++|++|..+|.++..+|+.... ...++...|.+|...+.+|-..
T Consensus 331 ~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~-eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 331 QELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDN-ESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SS-HHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhccccc-chHHHHHHHHHHHHHHHHHhhc
Confidence 456678889999887788999999999999999998764 1234677899999999887543
|
In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B. |
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=80.11 E-value=29 Score=27.86 Aligned_cols=182 Identities=13% Similarity=0.139 Sum_probs=104.0
Q ss_pred HHHHhhhHHHh-hccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH
Q psy11738 16 EFLKKSDDLFE-EQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93 (323)
Q Consensus 16 ~~~~~a~~~~~-~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 93 (323)
.-...++.+-. +.+|++|...++.- .+-..+..-+++|..+ ..|..-. .+.+..|+..++.+-+.+ .+
T Consensus 36 ~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~-~~GKgG~-------~~~l~~a~r~~~~aC~~n--~~ 105 (248)
T KOG4014|consen 36 SCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYM-LAGKGGD-------DASLSKAIRPMKIACDAN--IP 105 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhh-hcccCCC-------ccCHHHHHHHHHHHhccC--CH
Confidence 33344444443 68999999999875 5556677777777544 3443321 235678999999998854 56
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC----------cHHHHHHHHH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM----------PWYQRKIANA 163 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~----------~~~~~~~~~~ 163 (323)
.+-.++|.++-.-.....+ -.+..+|.+++.++-.+ ++..+.++|..+|..-..- +-........
T Consensus 106 ~aC~~~gLl~~~g~~~r~~---dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~ 180 (248)
T KOG4014|consen 106 QACRYLGLLHWNGEKDRKA---DPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSL 180 (248)
T ss_pred HHHhhhhhhhccCcCCccC---CCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhh
Confidence 6666677665432222211 11244788999998866 4667888888776543110 0000000000
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCC
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNY 221 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 221 (323)
.++-+.|.++--+|.+++- +.+--+++..|.. -.+-++|..+-++|.++
T Consensus 181 ------~kDMdka~qfa~kACel~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 181 ------SKDMDKALQFAIKACELDI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred ------hHhHHHHHHHHHHHHhcCC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 0123677777777777643 3445555555532 22455666666666554
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.02 E-value=5.2 Score=34.03 Aligned_cols=64 Identities=11% Similarity=0.006 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
.+.++.|+.+.++.+.++|+++.-+.-.|.+|..++.+. .|++-+...++.-|+++.+-...+.
T Consensus 194 e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~----------vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 194 ELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYH----------VALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCch----------hhHHHHHHHHHhCCCchHHHHHHHH
Confidence 446788999999999999999988888999999999888 7888899999999999887655443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 5e-09
Identities = 42/257 (16%), Positives = 80/257 (31%), Gaps = 80/257 (31%)
Query: 23 DLFEEQQFEEVNKMLESS-------EYK----------EDV-------EIIW-------- 50
D ++ +++ ++ESS EY+ +IW
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 51 RLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLE 110
+V K H SL + K+ +S + + E+ YA+H+ + N T +
Sbjct: 405 MVVVNKL----HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 111 GTKARIQQLET-----IKHHMNKAIELKPDDSTTLF-MLGMWCFEITDMPWYQRKIANA- 163
L+ I HH+ + + TLF M+ D + ++KI +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNI---EHPERMTLFRMV------FLDFRFLEQKIRHDS 511
Query: 164 ----------------------IFDTLPT-SSYEEALKYFLEAEKQHPLFYS-----QNV 195
I D P A+ FL +++ + +
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 196 LMLGKTYMRLENYEQAA 212
LM + E ++Q
Sbjct: 572 LMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-06
Identities = 44/359 (12%), Positives = 98/359 (27%), Gaps = 95/359 (26%)
Query: 8 KTVSKVSEEFLKKSDDLFEEQQF-------EEVNKMLESSEYKEDVE-IIWRLVRVKYNL 59
K + V E+ + D + Q EE++ ++ S + + W L+ + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 60 ATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATL-EGTKARIQQ 118
+ ++S Y + + N+ + +R+Q
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI--EQRDRLYNDNQVFAKYNVSRLQP 136
Query: 119 LETIKHHMNKAIELKPDDSTTLF-MLGM--WC--------FEITD-MP----WY---QRK 159
++ +EL+P + + +LG +++ M W
Sbjct: 137 YLKLR---QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219
+ + L + L Y ++ +S N+ +R+ + + L +K
Sbjct: 194 SPETVLEML------QKLLYQIDPNWTSRSDHSSNI------KLRIHSIQAELRRLLKSK 241
Query: 220 NYPVKQDKDQCFEITDMPWYQRKIANAIFD----TLPTSSY------------------- 256
Y C + K NA F+ L T+ +
Sbjct: 242 PYE------NCLLVLLNVQN-AKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 257 -------EEALKYFL------------EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 296
+E L E +P S + +N++
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 18/175 (10%), Positives = 53/175 (30%), Gaps = 35/175 (20%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF---LEA 183
+ A++ PD+ + +F + + AL +
Sbjct: 27 HAAVDGDPDNYIAYYRRA------------------TVFLAM--GKSKAALPDLTKVIAL 66
Query: 184 EKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITDMPWY 239
+ Q G ++ ++A + L+ + +++ + D
Sbjct: 67 KMDFTAARLQ----RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 240 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294
R A FD + Y A+ + + + + ++ + + +++ +A
Sbjct: 123 LRSQALDAFD---GADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKA 173
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 18/170 (10%), Positives = 49/170 (28%), Gaps = 25/170 (14%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLM-----LGKTYMRLENYEQAAYY----LEMTKNYPV 223
Y++AL + A + + + + +Y R + + A + ++++
Sbjct: 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257
Query: 224 KQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 283
F ++ + A EE L + + + + K
Sbjct: 258 DLLPKVLFGLSWTLCKAGQTQKAF------QFIEEGLDHITARSHKFYKELFLFLQAVYK 311
Query: 284 TYMRLENYEQAAYYLEMTKNYPAVQEATKLL----------EKAKSYLKK 323
+ Y E + ++ + E+A ++ +K
Sbjct: 312 ETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 39/206 (18%)
Query: 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF---L 181
+ + ++L D + A + Y +A + +
Sbjct: 233 EVRECLKLDQDHKRCFAHYKQ-----VKKLNKLIESAEELIRD---GRYTDATSKYESVM 284
Query: 182 EAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPVKQDKDQCFEITDMP 237
+ E + ++ + + + E +A L+M +
Sbjct: 285 KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV-------------NA 331
Query: 238 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY 297
R A I + Y+EA++ + A++ + Q L K L+ ++ YY
Sbjct: 332 LKDRAEAYLIEE-----MYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYY 385
Query: 298 LEMTKNYPAVQEATKLLEKAKSYLKK 323
+ V+ K E K+Y K
Sbjct: 386 KIL-----GVKRNAKKQEIIKAYRKL 406
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 14/172 (8%), Positives = 56/172 (32%), Gaps = 29/172 (16%)
Query: 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF---LEA 183
+ A++ PD+ + +F + + AL ++
Sbjct: 50 HAAVDGDPDNYIAYYRRA------------------TVFLAM--GKSKAALPDLTKVIQL 89
Query: 184 EKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242
+ Q G ++ ++A + ++ K+ P + ++ + ++
Sbjct: 90 KMDFTAARLQ----RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR 145
Query: 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294
+ + + + Y A+ + + + + ++ + + +++ +A
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKA 196
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 5e-04
Identities = 45/304 (14%), Positives = 89/304 (29%), Gaps = 44/304 (14%)
Query: 27 EQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86
E E + K E + + + R + N A + Q+ + V
Sbjct: 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127
Query: 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146
+ E+ K Q E K KA+E KP + L +
Sbjct: 128 SS-----PYRIESPELDCEEG-WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181
Query: 147 CFEITDMPWYQRKI--------------------ANAIFDTLPTS-SYEEALKYFLEAEK 185
+ + + P Q I A + E K EA +
Sbjct: 182 SYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE 241
Query: 186 QHPLFYSQNVLMLGKTYMRLENYEQA-AYY---LEMTKNYPV------KQDKDQCFEITD 235
+ P + + K Y R + ++A LE N + + F++ +
Sbjct: 242 KAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300
Query: 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 295
+ + + A+ + +A++ + + +L + + YE+A
Sbjct: 301 LRENGMYGKRKLLE-----LIGHAVAHLKKADEANDNLFRVCS-ILASLHALADQYEEAE 354
Query: 296 YYLE 299
YY +
Sbjct: 355 YYFQ 358
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.93 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.92 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.92 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.92 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.92 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.91 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.91 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.91 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.9 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.9 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.9 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.9 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.9 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.9 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.9 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.89 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.89 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.89 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.89 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.88 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.88 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.87 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.87 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.87 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.86 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.86 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.86 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.86 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.85 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.84 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.84 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.83 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.83 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.83 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.82 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.82 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.82 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.81 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.79 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.79 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.78 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.76 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.74 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.73 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.73 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.72 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.72 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.71 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.71 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.71 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.71 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.7 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.67 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.66 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.66 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.66 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.65 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.64 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.64 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.64 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.63 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.62 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.62 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.61 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.6 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.6 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.6 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.59 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.59 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.57 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.57 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.57 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.56 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.55 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.55 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.55 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.54 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.54 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.54 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.54 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.53 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.53 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.53 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.52 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.52 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.52 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.49 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.48 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.47 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.47 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.47 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.46 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.45 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.45 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.44 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.44 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.44 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.43 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.41 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.41 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.41 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.4 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.38 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.37 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.36 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.33 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.31 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.3 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.29 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.28 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.27 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.24 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.22 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.21 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.21 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.17 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.15 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.14 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.11 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.06 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.06 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.03 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.03 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.01 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.0 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.99 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.98 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.94 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.88 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.85 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.79 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.77 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.73 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.6 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.53 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.53 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.47 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.44 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.3 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.21 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.19 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.01 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.0 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.88 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.78 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.72 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.7 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.44 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.41 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.4 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.4 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.38 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.19 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.87 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.74 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.68 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.79 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.33 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 94.44 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 94.0 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 93.7 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 93.65 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.56 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 93.41 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.32 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.3 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.31 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.92 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 91.62 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.76 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.74 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.45 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.11 | |
| 1wfd_A | 93 | Hypothetical protein 1500032H18; MIT domain, struc | 85.44 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.18 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 84.76 | |
| 2w2u_A | 83 | Hypothetical P60 katanin; hydrolase transport comp | 80.68 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=208.01 Aligned_cols=274 Identities=13% Similarity=0.082 Sum_probs=172.0
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc---------H---------
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS---------D--------- 68 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~---------~--------- 68 (323)
..|..+..++..|..+...|++++|+..++++ .+|+++.++..+|.++...|++..+.. +
T Consensus 62 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 141 (388)
T 1w3b_A 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 141 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34556666777777777777777777777776 477777777777777777776643210 0
Q ss_pred ---HHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhh
Q psy11738 69 ---ADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGM 145 (323)
Q Consensus 69 ---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~ 145 (323)
....+++++|+..++++++.+|+++.++..+|.++...|++. +|+..|+++++++|+++.++..+|.
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~lg~ 211 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW----------LAIHHFEKAVTLDPNFLDAYINLGN 211 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 001244556666666666666666666666666666666555 6666777777777777777777777
Q ss_pred HHHHhcCCcHHHHHHHHHhhcC--------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 146 WCFEITDMPWYQRKIANAIFDT--------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
++...+++......+...+.-. ...|++++|+..|+++++++|++ +.++..+|.+|...|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHH
Confidence 7766666533222221111100 12355666666666666666665 45666666666666666666
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
+.+|+++++++|.+..... .++..+. ..|++++|+..|.+++.++|++ ..++..+|.+|...|++
T Consensus 291 ~~~~~~al~~~p~~~~~~~-----------~l~~~~~---~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 291 EDCYNTALRLCPTHADSLN-----------NLANIKR---EQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHH-----------HHHHHHH---TTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhCcccHHHHH-----------HHHHHHH---HcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCH
Confidence 6666666666555433211 1222222 2577888888888888888877 67778888888888888
Q ss_pred HHHHHHHHHhhCCCChh
Q psy11738 292 EQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~~ 308 (323)
++|+.+|+++++++|..
T Consensus 356 ~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 356 QEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHhhCCCC
Confidence 88888888888887663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-27 Score=209.51 Aligned_cols=234 Identities=16% Similarity=0.080 Sum_probs=167.9
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAI 95 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 95 (323)
...|..+...|++++|+..+.++ .+|+++.++..+|.+|...| ++++|+..++++++++|+++.+
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-------------~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG-------------EIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT-------------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHhcCCCcHHH
Confidence 33444444444444444444443 24444444444444444444 4567888888888888888888
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC--------
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT-------- 167 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~-------- 167 (323)
+..+|.++...+++. +|+..|.+++.++|+++.++..+|.++...|++......+...+...
T Consensus 206 ~~~lg~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 275 (388)
T 1w3b_A 206 YINLGNVLKEARIFD----------RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275 (388)
T ss_dssp HHHHHHHHHTTTCTT----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHHHHcCCHH----------HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 888888888888887 66677777777777777777777777777666533222222111110
Q ss_pred ------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHH
Q psy11738 168 ------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQR 241 (323)
Q Consensus 168 ------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 241 (323)
...|++++|+..|+++++++|++ +.++..+|.++...|++++|+.+|+++++++|.+.....
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------- 343 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS----------- 343 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH-----------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH-----------
Confidence 12367799999999999999998 699999999999999999999999999999998754321
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcC
Q psy11738 242 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 242 ~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~ 290 (323)
.++..+.. .|++++|+..|++++.++|++ +.+++.+|.++..+|+
T Consensus 344 ~l~~~~~~---~g~~~~A~~~~~~a~~~~p~~-~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 344 NLASVLQQ---QGKLQEALMHYKEAIRISPTF-ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHT---TTCCHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHHhhCCCC-HHHHHhHHHHHHHccC
Confidence 12222222 789999999999999999998 8999999999998875
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=211.93 Aligned_cols=247 Identities=9% Similarity=0.005 Sum_probs=214.1
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
....|.....+...+..+...|++++|+..++++ .+|++..+++.+|.++..+|+ .+++|+.++++
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~------------d~~eAl~~~~~ 157 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK------------DLHEEMNYITA 157 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------CHHHHHHHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHccc------------CHHHHHHHHHH
Confidence 3456677788888999999999999999999998 599999999999999999884 14779999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
+++++|+++.+|+++|.++..+|++. +|+.+|+++++++|++..+|+.+|.++..+|++
T Consensus 158 al~l~P~~~~a~~~~g~~~~~~g~~~----------eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~----------- 216 (382)
T 2h6f_A 158 IIEEQPKNYQVWHHRRVLVEWLRDPS----------QELEFIADILNQDAKNYHAWQHRQWVIQEFKLW----------- 216 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCT----------THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-----------
T ss_pred HHHHCCCCHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh-----------
Confidence 99999999999999999999999999 899999999999999999999999999999877
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-cCCHHHH-----HHHHHHHhCCCCCCchhhhhhhcchhH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR-LENYEQA-----AYYLEMTKNYPVKQDKDQCFEITDMPW 238 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~ 238 (323)
++|+.+|+++++++|++ ..+|+++|.+|.. .|.+++| +.+|++++.++|++.....
T Consensus 217 ---------~eAl~~~~~al~l~P~~-~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~-------- 278 (382)
T 2h6f_A 217 ---------DNELQYVDQLLKEDVRN-NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN-------- 278 (382)
T ss_dssp ---------TTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH--------
T ss_pred ---------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHH--------
Confidence 99999999999999998 6999999999999 5554788 5999999999999875432
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhc--------C-HHHHHHHHHHh-hCCCChh
Q psy11738 239 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE--------N-YEQAAYYLEMT-KNYPAVQ 308 (323)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g--------~-~~~A~~~~~~a-l~~~~~~ 308 (323)
. ++..+. ....+++++|++.+.++ +.+|++ ..++..||.+|..+| + +++|+.+|+++ ++++|..
T Consensus 279 -~--l~~ll~-~~g~~~~~~a~~~~~~~-~~~p~~-~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 279 -Y--LKGILQ-DRGLSKYPNLLNQLLDL-QPSHSS-PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp -H--HHHHHT-TTCGGGCHHHHHHHHHH-TTTCCC-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred -H--HHHHHH-ccCccchHHHHHHHHHh-ccCCCC-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 1 111111 11123689999999998 999998 789999999999985 3 58999999999 9999975
Q ss_pred HH
Q psy11738 309 EA 310 (323)
Q Consensus 309 ~~ 310 (323)
..
T Consensus 353 ~~ 354 (382)
T 2h6f_A 353 KE 354 (382)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=213.18 Aligned_cols=238 Identities=13% Similarity=0.063 Sum_probs=205.0
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
+.+...++..|..++..|++++|+..++++ .+|+++.++..+|.+|...|+ +++|+.++++++++
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENEN-------------EQAAIVALQRCLEL 128 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhc
Confidence 345566899999999999999999999998 599999999999999999885 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHH----------hhHHHHhcCCcHHHH
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFML----------GMWCFEITDMPWYQR 158 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~l----------g~~~~~~~~~~~~~~ 158 (323)
+|+++.++..+|.++...|++. +|+..|+++++++|+++.++..+ |.++...|
T Consensus 129 ~p~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 191 (365)
T 4eqf_A 129 QPNNLKALMALAVSYTNTSHQQ----------DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS------- 191 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCHHHHCC-------------------CCH-------
T ss_pred CCCCHHHHHHHHHHHHccccHH----------HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh-------
Confidence 9999999999999999999998 89999999999999988777666 55555554
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcch
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDM 236 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 236 (323)
++++|+.+|+++++++|+ + +.++..+|.+|...|++++|+.+|+++++++|.+.....
T Consensus 192 -------------~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------ 251 (365)
T 4eqf_A 192 -------------VLEGVKELYLEAAHQNGDMID-PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN------ 251 (365)
T ss_dssp -------------HHHHHHHHHHHHHHHSCSSCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH------
T ss_pred -------------hHHHHHHHHHHHHHhCcCccC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------
Confidence 449999999999999999 6 689999999999999999999999999999998754321
Q ss_pred hHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 237 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++..+.. .|++++|+..|.+++.++|++ +.++..+|.+|..+|++++|+.+|++++++.|.
T Consensus 252 -----~l~~~~~~---~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 252 -----RLGATLAN---GDRSEEAVEAYTRALEIQPGF-IRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp -----HHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHH---cCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 12222222 689999999999999999998 799999999999999999999999999999876
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=196.60 Aligned_cols=201 Identities=17% Similarity=0.147 Sum_probs=164.1
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHH
Q psy11738 43 KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETI 122 (323)
Q Consensus 43 ~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (323)
|.++++++.+|.++...|+ +++|+..++++++++|+++.++..+|.++...|++. +|
T Consensus 2 p~~~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~----------~A 58 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGR-------------YDAALTLFERALKENPQDPEALYWLARTQLKLGLVN----------PA 58 (217)
T ss_dssp --CCHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHH----------HH
T ss_pred CCcHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HH
Confidence 7788999999999999885 467999999999999999999999999999999999 89
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHh-----------cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEI-----------TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY 191 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 191 (323)
+..|+++++++|+++.+++.+|.++... |++ ++|+..|+++++++|++
T Consensus 59 ~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~--------------------~~A~~~~~~al~~~P~~- 117 (217)
T 2pl2_A 59 LENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL--------------------EQALSVLKDAERVNPRY- 117 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHH--------------------HHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCH--------------------HHHHHHHHHHHHhCccc-
Confidence 9999999999999999999999999988 654 99999999999999998
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 192 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 192 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
+.+++.+|.+|..+|++++|+.+|+++++++ .+.... . .++.++.. .|++++|+..|++++.++|
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~-~----------~la~~~~~---~g~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIR-S----------ALAELYLS---MGRLDEALAQYAKALEQAP 182 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH-H----------HHHHHHHH---HTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHH-H----------HHHHHHHH---cCCHHHHHHHHHHHHHhCC
Confidence 6999999999999999999999999999998 443321 1 12222222 6899999999999999999
Q ss_pred cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 272 LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 272 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
++ +.++..+|.++..+|++++|+.+|+++-.
T Consensus 183 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 183 KD-LDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp TC-HHHHHHHHHHHTC----------------
T ss_pred CC-hHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 98 79999999999999999999999988743
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=201.36 Aligned_cols=273 Identities=12% Similarity=0.053 Sum_probs=227.6
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC---------cH---H----
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL---------SD---A---- 69 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~---------~~---~---- 69 (323)
...|.....++..|..++..|++++|+..++++ ..|+++.++..+|.+|...|++..+. .+ .
T Consensus 31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 110 (359)
T 3ieg_A 31 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHH
Confidence 345666777888899999999999999988887 48888899999999998888765321 01 1
Q ss_pred --------------------HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHH
Q psy11738 70 --------------------DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKA 129 (323)
Q Consensus 70 --------------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 129 (323)
...+++++|+.+++++++.+|.++.++..+|.++...|++. +|...+.++
T Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~ 180 (359)
T 3ieg_A 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR----------KAISDLKAA 180 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH----------HHHHHHHHH
Confidence 12455789999999999999999999999999999999999 899999999
Q ss_pred HccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHH------------H
Q psy11738 130 IELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL------------M 197 (323)
Q Consensus 130 l~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------------~ 197 (323)
++++|+++.++..+|.++...|++ ++|+..|+++++++|++ ..++. .
T Consensus 181 ~~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 181 SKLKSDNTEAFYKISTLYYQLGDH--------------------ELSLSEVRECLKLDQDH-KRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HTTCSCCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhhCccc-hHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998766 99999999999999997 45543 4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhh
Q psy11738 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 277 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~ 277 (323)
+|.++...|++++|+.++++++...|.+.......+ ..++..+.. .|++++|+..|.+++..+|++ +.+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~-~~~ 308 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK-------ERICHCFSK---DEKPVEAIRICSEVLQMEPDN-VNA 308 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHH-------HHHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH-------HHHHHHHHH---ccCHHHHHHHHHHHHHhCccc-HHH
Confidence 488999999999999999999999998654322111 112222332 689999999999999999998 799
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCChh-HHHHHHHHHHhhhc
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ-EATKLLEKAKSYLK 322 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~~ 322 (323)
++.+|.+|...|++++|+.+|+++++++|++ +....+.+++..++
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998874 44577888777664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-26 Score=198.24 Aligned_cols=280 Identities=11% Similarity=0.033 Sum_probs=201.7
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..+++...++..|..++..|++++|+..++++ .+|.+..++..++.++...|++ ++|+.++++++
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-------------~~A~~~~~~~~ 83 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKA-------------NELFYLSHKLV 83 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCH-------------HHHHHHHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhH-------------HHHHHHHHHHH
Confidence 34555666788899999999999999988887 5888888888888888888854 55777777777
Q ss_pred cCCCCcHHHHHHHHHHHHHhh-cccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 87 PQHEDHYAIHKWLAVILNEKA-TLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+.+|.++.++..+|.++...| ++. +|+.+|.++++++|+++.++..+|.++...|++......+..++.
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 153 (330)
T 3hym_B 84 DLYPSNPVSWFAVGCYYLMVGHKNE----------HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153 (330)
T ss_dssp HHCTTSTHHHHHHHHHHHHSCSCHH----------HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHhhhhHH----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777777777777777 666 677777777777777777777777777777765322222211111
Q ss_pred cC--------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 166 DT--------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 166 ~~--------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
.. ...|++++|+..|+++++++|++ +.++..+|.+|...|++++|+.++++++...|........
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 232 (330)
T 3hym_B 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232 (330)
T ss_dssp HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTT
T ss_pred hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccc
Confidence 00 02456688888888888888887 5788888888888888888888888888775432211000
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH-H
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE-A 310 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~ 310 (323)
. ........++..+.. .|++++|+..|++++.++|++ ..++..+|.+|..+|++++|+.+|+++++++|++. +
T Consensus 233 ~--~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 233 D--KWEPLLNNLGHVCRK---LKKYAEALDYHRQALVLIPQN-ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp T--TCCHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred c--HHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhhCccc-hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 0 000111123333332 689999999999999999998 79999999999999999999999999999988644 3
Q ss_pred HHHHHHHH
Q psy11738 311 TKLLEKAK 318 (323)
Q Consensus 311 ~~~l~~~~ 318 (323)
...+..+.
T Consensus 307 ~~~l~~~~ 314 (330)
T 3hym_B 307 VTMLGHCI 314 (330)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-26 Score=198.59 Aligned_cols=228 Identities=15% Similarity=0.183 Sum_probs=186.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
..+.++++++.+|..++..|+ +++|+.+++++++.+|.++.++..++.++...|++.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~-------------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~---------- 73 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCD-------------FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN---------- 73 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHH----------
T ss_pred hchhhHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHH----------
Confidence 367788899999999998885 567999999999999999999999999999999998
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhc-CCcHHHHHHHHHhhcC--------------CCCCCHHHHHHHHHHHHh
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEIT-DMPWYQRKIANAIFDT--------------LPTSSYEEALKYFLEAEK 185 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~A~~~~~~al~ 185 (323)
+|...+.++++.+|+++.++..+|.++...| ++......+..++... ...|++++|+..|+++++
T Consensus 74 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 153 (330)
T 3hym_B 74 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153 (330)
T ss_dssp HHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 6643333222221111 134678999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q psy11738 186 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLE 265 (323)
Q Consensus 186 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~ 265 (323)
+.|++ ..++..+|.+|...|++++|+.++++++..+|.+..... .++..+.. .|++++|+..|.+
T Consensus 154 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~l~~~~~~---~~~~~~A~~~~~~ 218 (330)
T 3hym_B 154 LMKGC-HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH-----------EVGVVAFQ---NGEWKTAEKWFLD 218 (330)
T ss_dssp HTTTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH-----------HHHHHHHH---TTCHHHHHHHHHH
T ss_pred hcccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHH-----------HHHHHHHH---cccHHHHHHHHHH
Confidence 98887 588888999999999999999999999998887653321 12222222 6899999999999
Q ss_pred HHhhC---------CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 266 AEKQH---------PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 266 a~~~~---------p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
++... |.. +.++..+|.+|...|++++|+.+|++++++.|.
T Consensus 219 a~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKW-EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp HHHHHTTTSCSCTTTTC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhhhccccccccHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 99986 555 578999999999999999999999999999776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=200.98 Aligned_cols=291 Identities=13% Similarity=0.034 Sum_probs=222.5
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc-----------------
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS----------------- 67 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~----------------- 67 (323)
....|.++..++..|..++..|++++|+..++++ .+|.++.+++.+|.+|...|++..+..
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4566778888889999999999999999999887 488889999999999998888654320
Q ss_pred ----HHHHHHHHHHHHHHHHhhccCCCCcH---HHHHHH------------HHHHHHhhcccchHHHHHhHHHHHHHHHH
Q psy11738 68 ----DADKKQLILSAYFLVYNALPQHEDHY---AIHKWL------------AVILNEKATLEGTKARIQQLETIKHHMNK 128 (323)
Q Consensus 68 ----~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 128 (323)
.-.+.+++++|+.+++++++++|.++ .++..+ |.++...|++. +|+..|++
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~ 168 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT----------AAIAFLDK 168 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH----------HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHH
Confidence 01145678999999999999999998 776666 44466666666 89999999
Q ss_pred HHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC--------------CCCCCHHHHHHHHHHHHhcCCCchhHH
Q psy11738 129 AIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT--------------LPTSSYEEALKYFLEAEKQHPLFYSQN 194 (323)
Q Consensus 129 al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~A~~~~~~al~~~p~~~~~~ 194 (323)
+++++|.++.++..+|.++...|++......+...+... ...|++++|+..|+++++++|++ ...
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~ 247 (450)
T 2y4t_A 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH-KRC 247 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred HHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh-HHH
Confidence 999999999999999999999998743322222211100 13578899999999999999987 566
Q ss_pred HHHH------------HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHH
Q psy11738 195 VLML------------GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 262 (323)
Q Consensus 195 ~~~l------------g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~ 262 (323)
+..+ |.++...|++++|+.+|++++.++|.+....... ...++..+.. .|++++|+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------~~~l~~~~~~---~g~~~~A~~~ 317 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS-------KERICHCFSK---DEKPVEAIRV 317 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHH-------HHHHHHHHHT---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHH-------HHHHHHHHHH---CCCHHHHHHH
Confidence 6555 8889999999999999999998888764321111 1122222222 6899999999
Q ss_pred HHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH-HHHHHHHHHh
Q psy11738 263 FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE-ATKLLEKAKS 319 (323)
Q Consensus 263 ~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~l~~~~~ 319 (323)
+.+++.++|++ +.++..+|.+|...|++++|+.+|++++++.|++. ....+..++.
T Consensus 318 ~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 318 CSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 99999999998 79999999999999999999999999999988743 3455555443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-26 Score=201.38 Aligned_cols=235 Identities=14% Similarity=0.101 Sum_probs=207.2
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
...++..|..++..|++++|+..++++ .+|.++.++..+|.+|...|+ +++|+.+++++++++|.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~~~~~ 130 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ-------------ELLAISALRRCLELKPD 130 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-------------HHHHHHHHHHHHhcCCC
Confidence 556789999999999999999999997 699999999999999999885 46799999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHH----------------HHhhHHHHhcCCcH
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLF----------------MLGMWCFEITDMPW 155 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~----------------~lg~~~~~~~~~~~ 155 (323)
++.++..+|.++...|++. +|++.+.++++++|++...+. .+|.++ ..|+
T Consensus 131 ~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 196 (368)
T 1fch_A 131 NQTALMALAVSFTNESLQR----------QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSL--- 196 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHH---
T ss_pred CHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hccc---
Confidence 9999999999999999998 899999999999999988776 345444 5443
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
+++|+..|+++++++|+ . +.++..+|.+|...|++++|+.+|++++.++|.+.....
T Consensus 197 -----------------~~~A~~~~~~a~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--- 255 (368)
T 1fch_A 197 -----------------FLEVKELFLAAVRLDPTSID-PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN--- 255 (368)
T ss_dssp -----------------HHHHHHHHHHHHHHSTTSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred -----------------HHHHHHHHHHHHHhCcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH---
Confidence 49999999999999999 6 688999999999999999999999999999988754321
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
.++..+.. .|++++|+..|.+++.++|+. +.++..+|.+|..+|++++|+.+|++++++.|..
T Consensus 256 --------~l~~~~~~---~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 256 --------KLGATLAN---GNQSEEAVAAYRRALELQPGY-IRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp --------HHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred --------HHHHHHHH---cCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 12222222 689999999999999999998 7999999999999999999999999999997765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-25 Score=192.48 Aligned_cols=259 Identities=11% Similarity=0.049 Sum_probs=217.9
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc---------------------HH
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS---------------------DA 69 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~---------------------~~ 69 (323)
+++.++..|..++..|++++|+..++++ .+|.++.+++.+|.+|...|++..+.. .-
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4677899999999999999999999997 599999999999999999998764320 01
Q ss_pred HHHHHHHHHHHHHHhhccCCC---CcHHHHHHH------------HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC
Q psy11738 70 DKKQLILSAYFLVYNALPQHE---DHYAIHKWL------------AVILNEKATLEGTKARIQQLETIKHHMNKAIELKP 134 (323)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p 134 (323)
...+++++|+..++++++++| +++.++..+ |.++...|++. +|++.++++++.+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT----------AAITFLDKILEVCV 151 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCT
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCC
Confidence 256779999999999999999 999998887 56777777777 89999999999999
Q ss_pred CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
+++.++..+|.++...|++ ++|+..|+++++++|++ +.++..+|.+|...|++++|+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEP--------------------RKAISDLKAASKLKSDN-TEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHTTCSCC-HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998765 99999999999999998 69999999999999999999999
Q ss_pred HHHHhCCCCCCchhhhhhhcchh--HHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchh----hhhHHHHHHHHHh
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMP--WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS----QNVLMLGKTYMRL 288 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~----~~~~~lg~~y~~~ 288 (323)
+++++..+|.+...... +..+. ......+..++. .|++++|+..|.+++...|++ + ..+..+|.+|...
T Consensus 211 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 211 VRECLKLDQDHKRCFAH-YKQVKKLNKLIESAEELIR---DGRYTDATSKYESVMKTEPSV-AEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHCTTCHHHHHH-HHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCccchHHHHH-HHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHc
Confidence 99999999988654321 00000 001112333333 689999999999999999987 4 3466799999999
Q ss_pred cCHHHHHHHHHHhhCCCCh
Q psy11738 289 ENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 289 g~~~~A~~~~~~al~~~~~ 307 (323)
|++++|+.+|+++++++|.
T Consensus 286 ~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred cCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999886
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=194.83 Aligned_cols=248 Identities=12% Similarity=0.051 Sum_probs=203.4
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
.+.++..|..++..|++++|+..++++ .+|.++.++..+|.+|...|+ +++|+.+++++++ .|.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~a~~-~~~ 68 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK-------------YDLAQKDIETYFS-KVN 68 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC-------------HHHHHHHHHHHHT-TSC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh-------------HHHHHHHHHHHHh-ccC
Confidence 345788999999999999999999997 699999999999999999885 4679999999999 555
Q ss_pred cHHH----HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 92 HYAI----HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 92 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
++.. +..+|.++...|++. +|+.+|+++++++|+++.++..+|.++...|++
T Consensus 69 ~~~~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-------------- 124 (272)
T 3u4t_A 69 ATKAKSADFEYYGKILMKKGQDS----------LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF-------------- 124 (272)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH--------------
T ss_pred chhHHHHHHHHHHHHHHHcccHH----------HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCH--------------
Confidence 5444 899999999999998 899999999999999999999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHh
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAI 247 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 247 (323)
++|+.+|+++++++|++ +.+++.+|......+++++|+.+|+++++++|.+..... . ++...
T Consensus 125 ------~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~---------~--~~~~~ 186 (272)
T 3u4t_A 125 ------PLAIQYMEKQIRPTTTD-PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL---------W--RARAN 186 (272)
T ss_dssp ------HHHHHHHGGGCCSSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH---------H--HHHHH
T ss_pred ------HHHHHHHHHHhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHH---------H--HHHHH
Confidence 99999999999999998 699999995555566999999999999999998754322 1 11112
Q ss_pred hccCCCCcHHHHHHHHHHHHhhC---Ccc----hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH-HHHHHHH
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQH---PLF----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA-TKLLEKA 317 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~---p~~----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~~ 317 (323)
........+++|+..|++++.+. |+. ...++..+|.+|..+|++++|+.+|+++++++|++.. .+.+..+
T Consensus 187 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 187 AAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 21112233788999999999886 441 1257889999999999999999999999999887543 4555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=192.98 Aligned_cols=237 Identities=16% Similarity=0.094 Sum_probs=204.8
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
.....++..|..++..|++++|+..++++ .+|+++.++..+|.++...|+ +++|+.+++++++++
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK-------------DGLAIIALNHARMLD 85 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhcC
Confidence 45667899999999999999999999997 599999999999999999885 467999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHH--------------hh-HHHHhcCCc
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFML--------------GM-WCFEITDMP 154 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~l--------------g~-~~~~~~~~~ 154 (323)
|.++.++..+|.++...|++. +|.+.+.++++.+|.+...+..+ |. ++...
T Consensus 86 ~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 151 (327)
T 3cv0_A 86 PKDIAVHAALAVSHTNEHNAN----------AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP---- 151 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTSTTTTTC--------------------CCTTSH----
T ss_pred cCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc----
Confidence 999999999999999999998 89999999999999999888777 43 33333
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
+++++|+..|+++++.+|++ ..++..+|.+|...|++++|+.++++++..+|.+.....
T Consensus 152 ----------------~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---- 210 (327)
T 3cv0_A 152 ----------------NEYRECRTLLHAALEMNPND-AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN---- 210 (327)
T ss_dssp ----------------HHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH----
T ss_pred ----------------ccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH----
Confidence 34599999999999999997 699999999999999999999999999999988754321
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++..+.. .|++++|+..|.+++..+|+. ..++..+|.+|...|++++|+.+|++++++.|.
T Consensus 211 -------~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 211 -------KLGATLAN---GNRPQEALDAYNRALDINPGY-VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp -------HHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHH---cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 12222222 689999999999999999998 789999999999999999999999999999777
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=185.74 Aligned_cols=226 Identities=13% Similarity=0.155 Sum_probs=197.8
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
..+..++..|..++..|++++|+..++++ .. .++.+++.+|.+|..+|+ +++|+.+++++++++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~a~~~~ 68 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE-------------YETAISTLNDAVEQG 68 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc-------------HHHHHHHHHHHHHhC
Confidence 45678899999999999999999999987 36 889999999999999885 467999999999999
Q ss_pred CCc-------HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 90 EDH-------YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 90 p~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
|++ +.++..+|.++...|++. +|+.+|+++++++|. +.++...+++
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~a~~~~~~--------~~~~~~~~~~--------- 121 (258)
T 3uq3_A 69 REMRADYKVISKSFARIGNAYHKLGDLK----------KTIEYYQKSLTEHRT--------ADILTKLRNA--------- 121 (258)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCCC--------HHHHHHHHHH---------
T ss_pred cccccchHHHHHHHHHHHHHHHHcccHH----------HHHHHHHHHHhcCch--------hHHHHHHhHH---------
Confidence 987 789999999999999998 899999999999987 2334444433
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHH
Q psy11738 163 AIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242 (323)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 242 (323)
++|+..+++++..+|+. +.++..+|.++...|++++|+.+|++++..+|.+..... .
T Consensus 122 -----------~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----------~ 178 (258)
T 3uq3_A 122 -----------EKELKKAEAEAYVNPEK-AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS-----------N 178 (258)
T ss_dssp -----------HHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----------H
T ss_pred -----------HHHHHHHHHHHHcCcch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHH-----------H
Confidence 99999999999999997 699999999999999999999999999999998753211 1
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 243 ~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
++..+.. .|++++|+..|.+++..+|++ +.++..+|.+|..+|++++|+.+|++++++.
T Consensus 179 l~~~~~~---~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 179 RAAALAK---LMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---hCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 2222222 689999999999999999998 7999999999999999999999999999998
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=183.23 Aligned_cols=198 Identities=14% Similarity=0.096 Sum_probs=162.8
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|+++..++..|..++..|++++|+..++++ .+|+++++++.+|.++...|+ +++|+..+++++++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL-------------VNPALENGKTLVAR 68 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHh
Confidence 667778899999999999999999999997 699999999999999999885 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHh-----------hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHH
Q psy11738 89 HEDHYAIHKWLAVILNEK-----------ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQ 157 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~ 157 (323)
+|+++.++..+|.++... |++. +|+..|+++++++|+++.++..+|.++...|++
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~----------~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~---- 134 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE----------QALSVLKDAERVNPRYAPLHLQRGLVYALLGER---- 134 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh----
Confidence 999999999999999999 7777 899999999999999999999999999998765
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchh
Q psy11738 158 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMP 237 (323)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 237 (323)
++|+..|+++++++ ++ +.+++++|.+|..+|++++|+.+|++++.++|.+.....
T Consensus 135 ----------------~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~------- 189 (217)
T 2pl2_A 135 ----------------DKAEASLKQALALE-DT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRV------- 189 (217)
T ss_dssp ----------------HHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH-------
T ss_pred ----------------HHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-------
Confidence 99999999999999 76 799999999999999999999999999999998865422
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy11738 238 WYQRKIANAIFDTLPTSSYEEALKYFLEAE 267 (323)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~ 267 (323)
.++..+. ..|++++|+..|+++.
T Consensus 190 ----~la~~~~---~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 190 ----RYASALL---LKGKAEEAARAAALEH 212 (217)
T ss_dssp ----HHHHHHT---C---------------
T ss_pred ----HHHHHHH---HccCHHHHHHHHHHHh
Confidence 1222222 3689999999998764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=200.20 Aligned_cols=267 Identities=13% Similarity=0.177 Sum_probs=217.9
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
..+..++..|..++..|++++|+..++++ .+|+++.++..+|.+|..+|+ +++|+..++++++++
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~al~~~ 89 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-------------LEKVIEFTTKALEIK 89 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhcC
Confidence 35677899999999999999999999998 599999999999999999885 467999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHH-----------------------------------------------------
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARI----------------------------------------------------- 116 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 116 (323)
|+++.++..+|.++...|++..+....
T Consensus 90 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 169 (537)
T 3fp2_A 90 PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH
Confidence 999999999999999999877554321
Q ss_pred ----------------------------------------------HhHHHHHHHHHHHHccCCCChhH-------HHHH
Q psy11738 117 ----------------------------------------------QQLETIKHHMNKAIELKPDDSTT-------LFML 143 (323)
Q Consensus 117 ----------------------------------------------~~~~~a~~~~~~al~l~p~~~~~-------~~~l 143 (323)
+...+|+..|+++++.+|+++.. +..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249 (537)
T ss_dssp HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence 25668888999999999999764 6666
Q ss_pred hhHHHHhcCCcHHHHHHHHHhhc-------------CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHH
Q psy11738 144 GMWCFEITDMPWYQRKIANAIFD-------------TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ 210 (323)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~ 210 (323)
|.++...|++......+...+.. -...|++++|+..|+++++++|++ +.++..+|.+|...|++++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY-PPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHH
Confidence 67777766654332222221111 135688999999999999999997 6999999999999999999
Q ss_pred HHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcC
Q psy11738 211 AAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 211 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~ 290 (323)
|+.+|++++.++|.+..... .++..++. .|++++|+..|.+++..+|++ +.++..+|.+|...|+
T Consensus 329 A~~~~~~a~~~~~~~~~~~~-----------~la~~~~~---~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYI-----------QLACLLYK---QGKFTESEAFFNETKLKFPTL-PEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHH-----------HHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCHHHHH-----------HHHHHHHH---cCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCC
Confidence 99999999999998764322 12222222 689999999999999999998 7899999999999999
Q ss_pred HHHHHHHHHHhhCCCCh
Q psy11738 291 YEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 291 ~~~A~~~~~~al~~~~~ 307 (323)
+++|+.+|++++++.|.
T Consensus 394 ~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 99999999999988765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=198.80 Aligned_cols=234 Identities=13% Similarity=0.033 Sum_probs=178.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCc---------------------HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLS---------------------DADKKQLILSAYFLVYNALPQHEDHYAIHKWL 99 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~---------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 99 (323)
.+|.+++.++.+|.+|...|++..+.. .....+++++|+.+++++++++|+++.++..+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 588999999999999999987653210 01134557777777777777777777777777
Q ss_pred HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHH
Q psy11738 100 AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEA 176 (323)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 176 (323)
|.++...|++. +|+..|+++++++|+++ .++..++.++...+.+. .+.... ..|++++|
T Consensus 101 ~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~a~~~~---~~~~~~~A 162 (450)
T 2y4t_A 101 GHLLLKQGKLD----------EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS-----QALNAF---GSGDYTAA 162 (450)
T ss_dssp HHHHHHTTCHH----------HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---HHTCHHHH
T ss_pred HHHHHHcCCHH----------HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHH-----HHHHHH---HcCCHHHH
Confidence 77777777777 89999999999999998 88777755422221110 000000 01456999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcH
Q psy11738 177 LKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSY 256 (323)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 256 (323)
+..|+++++++|++ ..++..+|.+|...|++++|+.+|++++..+|.+..... .++..+.. .|++
T Consensus 163 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~---~g~~ 227 (450)
T 2y4t_A 163 IAFLDKILEVCVWD-AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY-----------KISTLYYQ---LGDH 227 (450)
T ss_dssp HHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHH-----------HHHHHHHH---TTCH
T ss_pred HHHHHHHHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHH---cCCH
Confidence 99999999999998 699999999999999999999999999999888754321 12222222 6899
Q ss_pred HHHHHHHHHHHhhCCcchhhhhHHH------------HHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 257 EEALKYFLEAEKQHPLFYSQNVLML------------GKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 257 ~~Al~~~~~a~~~~p~~~~~~~~~l------------g~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
++|+..|.+++.++|+. ...+..+ |.++...|++++|+.+|++++++.|.+
T Consensus 228 ~~A~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 228 ELSLSEVRECLKLDQDH-KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999998 6666555 999999999999999999999998773
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=194.58 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=182.2
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhc-ccchHHHHHhHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKAT-LEGTKARIQQLE 120 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 120 (323)
+|++.+++..+|.++...|++ ++|+..++++++++|++..++..+|.++..+|+ +.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~-------------~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~---------- 149 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERS-------------ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH---------- 149 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCC-------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH----------
T ss_pred ChhhHHHHHHHHHHHHHCCCh-------------HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHH----------
Confidence 667789999999999888754 669999999999999999999999999999997 88
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
+|+.+|+++++++|+++.+|+.+|.++..+|++ ++|+.+|+++++++|++ ..+|+++|.
T Consensus 150 eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~--------------------~eAl~~~~kal~ldP~~-~~a~~~lg~ 208 (382)
T 2h6f_A 150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP--------------------SQELEFIADILNQDAKN-YHAWQHRQW 208 (382)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC--------------------TTHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH--------------------HHHHHHHHHHHHhCccC-HHHHHHHHH
Confidence 899999999999999999999999999999877 99999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHH-----HHHHHHHHhhCCcchh
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEA-----LKYFLEAEKQHPLFYS 275 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~A-----l~~~~~a~~~~p~~~~ 275 (323)
++..+|++++|+.+|++++.++|.+..... .+..+ +... .+.+++| +.+|.+++.++|++ .
T Consensus 209 ~~~~~g~~~eAl~~~~~al~l~P~~~~a~~---------~lg~~--l~~l--~~~~~eA~~~~el~~~~~Al~l~P~~-~ 274 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWN---------QRYFV--ISNT--TGYNDRAVLEREVQYTLEMIKLVPHN-E 274 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHH---------HHHHH--HHHT--TCSCSHHHHHHHHHHHHHHHHHSTTC-H
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHH---------HHHHH--HHHh--cCcchHHHHHHHHHHHHHHHHHCCCC-H
Confidence 999999999999999999999999876532 22222 1110 1233555 69999999999999 7
Q ss_pred hhhHHHHHHHHHhc--CHHHHHHHHHHhhCCCChh
Q psy11738 276 QNVLMLGKTYMRLE--NYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 276 ~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~ 308 (323)
.+|+++|.++...| ++++|++.+.++ +.+|++
T Consensus 275 ~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~ 308 (382)
T 2h6f_A 275 SAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS 308 (382)
T ss_dssp HHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC
T ss_pred HHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC
Confidence 99999999999988 699999999998 777763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-24 Score=200.82 Aligned_cols=263 Identities=12% Similarity=0.010 Sum_probs=188.7
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCC------------c---------
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSL------------S--------- 67 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~------------~--------- 67 (323)
+++...+...+..+...|++++|+..++++ ..|.+..++..++.+|...|+..... .
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 466777888888899999999999888887 47777777777888877777542210 0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 68 DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
...+.|++++|+.+|+++++++|.++.++..++.++...|+++ +|++.|+++++..|++..++..+|.++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD----------QAISAYTTAARLFQGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 0012233455566666666556655555555666665555555 556666666666666666666666666
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC---
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK--- 224 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~--- 224 (323)
...| ++++|+..|+++++++|++ +.++..+|.+|.+.|++++|+.+|+++++..|.
T Consensus 452 ~~~g--------------------~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 452 MQLG--------------------NILLANEYLQSSYALFQYD-PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHT--------------------CHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHcC--------------------CHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 5554 4599999999999999997 688999999999999999999999999887432
Q ss_pred CchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 225 QDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
++.... .....++..+.. .|++++|+..|++++..+|++ +.++..+|.+|...|++++|..+|++++++
T Consensus 511 ~p~~~~-------~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 511 NEKPWA-------ATWANLGHAYRK---LKMYDAAIDALNQGLLLSTND-ANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CSGGGH-------HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHH-------HHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 221100 011122222222 689999999999999999998 799999999999999999999999999999
Q ss_pred CChhHH-HHHHH
Q psy11738 305 PAVQEA-TKLLE 315 (323)
Q Consensus 305 ~~~~~~-~~~l~ 315 (323)
+|++.. ...|.
T Consensus 580 ~p~~~~~~~~l~ 591 (597)
T 2xpi_A 580 SPNEIMASDLLK 591 (597)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCChHHHHHHH
Confidence 887643 34443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=171.63 Aligned_cols=171 Identities=13% Similarity=0.122 Sum_probs=103.4
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++.+|+.+|.++...|+++ +|+++|+++++++|+++.++..+|.++...|++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~------------------ 55 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFD----------GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLP------------------ 55 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH------------------
T ss_pred HHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH------------------
Confidence 4445555555555555555 555555555555555555555555555554433
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
++|+..+.+++..+|++ +.++..+|.++...++++.|+..+++++.++|.+..... .++..+..
T Consensus 56 --~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~-----------~lg~~~~~-- 119 (184)
T 3vtx_A 56 --NDAIESLKKFVVLDTTS-AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYY-----------KLGLVYDS-- 119 (184)
T ss_dssp --HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHH--
T ss_pred --HHHHHHHHHHHhcCchh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH-----------HHHHHHHH--
Confidence 55555555555555554 355555555555555555555555555555555432211 01111111
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
.|++++|+..|+++++++|++ +.+++.+|.+|..+|++++|+.+|++|++++|++
T Consensus 120 -~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 120 -MGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred -hCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 455666666666667778877 7889999999999999999999999999998864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=199.63 Aligned_cols=245 Identities=13% Similarity=0.119 Sum_probs=208.6
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
..+...|..+...|++++|+..++++ .+|. +.+++.+|.+|...|++ ++|+.+++++++.+|++
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~-------------~~A~~~~~~~~~~~~~~ 309 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS-------------QEFFKFFQKAVDLNPEY 309 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC-------------HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH-------------HHHHHHHHHHhccCCCC
Confidence 34677888888999999999999997 4777 89999999999887755 66999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
+.++..+|.++...|++. +|+..|+++++++|+++.++..+|.++...|++
T Consensus 310 ~~~~~~l~~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~------------------- 360 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYK----------NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF------------------- 360 (537)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCH-------------------
T ss_pred HHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------------------
Confidence 999999999999999998 899999999999999999999999999998765
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc--
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT-- 250 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-- 250 (323)
++|+..|+++++++|++ +.++..+|.++...|++++|+.+|++++.++|.+..... .++. ++ ..+..+...
T Consensus 361 -~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~--~~--~~a~~~~~~~~ 433 (537)
T 3fp2_A 361 -TESEAFFNETKLKFPTL-PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV-GIGP--LI--GKATILARQSS 433 (537)
T ss_dssp -HHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS-TTHH--HH--HHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH-HHHH--HH--HHHHHHHHHhh
Confidence 99999999999999998 699999999999999999999999999999877654322 1100 01 111111110
Q ss_pred -----CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 251 -----LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 251 -----~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
...|++++|+..|.+++..+|++ +.++..+|.+|..+|++++|+.+|++++++.|....
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACELDPRS-EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred ccchhhhHhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 11188999999999999999998 799999999999999999999999999999887443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=188.13 Aligned_cols=241 Identities=12% Similarity=-0.009 Sum_probs=205.0
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..|......+..|..++..|++++|+..++++ ..|.++.++..+|.+|...|+ +++|+.++++++
T Consensus 50 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~~~ 116 (327)
T 3cv0_A 50 AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN-------------ANAALASLRAWL 116 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHH
Confidence 34566777888899999999999999999987 589999999999999998885 467999999999
Q ss_pred cCCCCcHHHHHHH--------------HH-HHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 87 PQHEDHYAIHKWL--------------AV-ILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 87 ~~~p~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
+.+|.+...+..+ +. ++...|++. +|+..++++++.+|+++.++..+|.++...|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 117 LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR----------ECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HTSTTTTTC--------------------CCTTSHHHHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Confidence 9999999887776 44 466666666 8999999999999999999999999999987
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
++ ++|+..|+++++++|++ +.++..+|.+|...|++++|+.+|++++..+|.+.....
T Consensus 187 ~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~- 244 (327)
T 3cv0_A 187 NY--------------------DSAAANLRRAVELRPDD-AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY- 244 (327)
T ss_dssp CH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-
T ss_pred cH--------------------HHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-
Confidence 65 99999999999999998 699999999999999999999999999999988654321
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc------------chhhhhHHHHHHHHHhcCHHHHHHHHH
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL------------FYSQNVLMLGKTYMRLENYEQAAYYLE 299 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~------------~~~~~~~~lg~~y~~~g~~~~A~~~~~ 299 (323)
.++..+.. .|++++|+..|++++.+.|+ . ...+..+|.+|..+|++++|..+++
T Consensus 245 ----------~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 245 ----------NMAVSYSN---MSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT-RSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp ----------HHHHHHHH---TTCHHHHHHHHHHHHHHHTTSCC-----CCTHH-HHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ----------HHHHHHHH---hccHHHHHHHHHHHHHhCCccccccccchhhcC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 12222222 68999999999999999998 6 7889999999999999999999999
Q ss_pred HhhCCCChh
Q psy11738 300 MTKNYPAVQ 308 (323)
Q Consensus 300 ~al~~~~~~ 308 (323)
++++..|+.
T Consensus 311 ~~l~~~~~~ 319 (327)
T 3cv0_A 311 QNVEPFAKE 319 (327)
T ss_dssp CCSHHHHHH
T ss_pred HHHHhcchh
Confidence 988775543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=192.92 Aligned_cols=239 Identities=14% Similarity=0.004 Sum_probs=200.0
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
...|.....+...|..+...|++++|+..++++ .+|+++.++..+|.+|...|+ +++|+.+++++
T Consensus 93 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~a 159 (365)
T 4eqf_A 93 LQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH-------------QQDACEALKNW 159 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc-------------HHHHHHHHHHH
Confidence 345667788899999999999999999999997 589999999999999999885 46799999999
Q ss_pred ccCCCCcHHHHHHH----------HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC--ChhHHHHHhhHHHHhcCC
Q psy11738 86 LPQHEDHYAIHKWL----------AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD--DSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 86 l~~~p~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~--~~~~~~~lg~~~~~~~~~ 153 (323)
++++|+++.++..+ |.++...|++. +|+.+|+++++++|+ ++.++..+|.++...|++
T Consensus 160 l~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 160 IKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE----------GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp HHHCHHHHCC-------------------CCHHHH----------HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCH
T ss_pred HHhCccchHHHhhhccchHHHHHHHHHHhhhhhHH----------HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCH
Confidence 99999988887766 77777777777 899999999999999 999999999999998765
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
++|+.+|+++++++|++ +.++..+|.+|...|++++|+.+|++++.++|.+.....
T Consensus 230 --------------------~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--- 285 (365)
T 4eqf_A 230 --------------------NRAIDAFNAALTVRPED-YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY--- 285 (365)
T ss_dssp --------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred --------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH---
Confidence 99999999999999998 699999999999999999999999999999998754322
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-----------hhhhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----------SQNVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-----------~~~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
.++..+.. .|++++|+..|++++.++|+.. ..++..+|.++..+|+.+.|..+..+.+
T Consensus 286 --------~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 286 --------NLGISCIN---LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp --------HHHHHHHH---HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred --------HHHHHHHH---CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 12222222 5889999999999999998721 4678999999999999999999887765
Q ss_pred CC
Q psy11738 303 NY 304 (323)
Q Consensus 303 ~~ 304 (323)
+.
T Consensus 355 ~~ 356 (365)
T 4eqf_A 355 DV 356 (365)
T ss_dssp GG
T ss_pred HH
Confidence 43
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=194.56 Aligned_cols=249 Identities=12% Similarity=0.107 Sum_probs=216.3
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|.....++..|..++..|++++|+..++++ ..|. +.++..+|.+|...|++.. |+.++++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~-------------A~~~~~~~~~~ 299 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTE-------------YYNYFDKALKL 299 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTT-------------GGGHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHH-------------HHHHHHHHhhc
Confidence 666777888999999999999999999987 4777 9999999999999998765 89999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|.++.++..+|.++...|++. +|+..|+++++++|+++.++..+|.++...|++
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------- 354 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYD----------QAGKDFDKAKELDPENIFPYIQLACLAYRENKF--------------- 354 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTT----------HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH---------------
T ss_pred CcCCHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH---------------
Confidence 9999999999999999999999 899999999999999999999999999887655
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|+..|+++++.+|++ +.++..+|.+|...|++++|+.+|++++..+|.+...... . .....++..++
T Consensus 355 -----~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---~--~~~~~l~~~~~ 423 (514)
T 2gw1_A 355 -----DDCETLFSEAKRKFPEA-PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG---I--APLVGKATLLT 423 (514)
T ss_dssp -----HHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSC---S--HHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcccC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHH---H--HHHHHHHHHHh
Confidence 99999999999999998 6999999999999999999999999999998877542110 0 01112222222
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
.....|++++|+..|.+++..+|++ +.++..+|.+|...|++++|+.+|++++++.|.+..
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLDPRS-EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 2001589999999999999999998 799999999999999999999999999999887544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=197.50 Aligned_cols=264 Identities=15% Similarity=0.096 Sum_probs=180.8
Q ss_pred hHHHHHHhhhHHHh--hccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCc---------------HH----
Q psy11738 13 VSEEFLKKSDDLFE--EQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLS---------------DA---- 69 (323)
Q Consensus 13 ~~~~~~~~a~~~~~--~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~---------------~~---- 69 (323)
.+......|..+.. .++|++|+..++++ .+|++++++..++.++..++....... ..
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 34445555655554 56899999999998 599999999999999887766543210 00
Q ss_pred ---------HHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHH
Q psy11738 70 ---------DKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTL 140 (323)
Q Consensus 70 ---------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~ 140 (323)
...+.+++|+.++++++.++|.++.++..+|.++...|++. +|+..|.++++++|+++.++
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD----------KAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchH----------HHHHHHHHHHHhCCChHHHH
Confidence 01345667888888888888888888888888888888877 88888999999999999888
Q ss_pred HHHhhHHHHhcCCc---------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 141 FMLGMWCFEITDMP---------WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 141 ~~lg~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
+.+|.+|...+... ...... ..+++|+.+|+++++++|.+ ..++..+|.+|...|++++|
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~a~~~~~~~-~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLL----------ELIGHAVAHLKKADEANDNL-FRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHH----------HHHHHHHHHHHHHHHHCTTT-CCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------hhHHHHHHHHHHHhhcCCch-hhhhhhHHHHHHHhccHHHH
Confidence 88888876543110 000001 12489999999999999997 69999999999999999999
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC---------------------
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH--------------------- 270 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~--------------------- 270 (323)
+.+|+++++++|.+........ .++.... ...+++++|+.+|.+++.++
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l 423 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHL--------RYGNFQL--YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHH--------HHHHHHH--HTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHH--------HHHHHHH--HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999877543211000 0111111 12578999999998888765
Q ss_pred ---CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 271 ---PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 271 ---p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
|++ +.++..||.+|..+|++++|+++|++|+++.|..
T Consensus 424 ~~~p~~-~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 424 SKNGAD-SEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHCC-C-TTHHHHHHHHHHHHHHCC----------------
T ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 555 5789999999999999999999999999997653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=189.48 Aligned_cols=238 Identities=15% Similarity=0.028 Sum_probs=204.9
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
...|.....++..|..++..|++++|+..++++ ..|.++.++..+|.+|...|+ +++|+..++++
T Consensus 92 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~ 158 (368)
T 1fch_A 92 QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL-------------QRQACEILRDW 158 (368)
T ss_dssp HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHH
Confidence 345667778889999999999999999999997 589999999999999999885 46799999999
Q ss_pred ccCCCCcHHHHH----------------HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC--ChhHHHHHhhHH
Q psy11738 86 LPQHEDHYAIHK----------------WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD--DSTTLFMLGMWC 147 (323)
Q Consensus 86 l~~~p~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~--~~~~~~~lg~~~ 147 (323)
+.++|.+...+. .++.++ ..|++. +|+..|.++++++|+ ++.++..+|.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~A~~~~~~a~~~~p~~~~~~~~~~l~~~~ 227 (368)
T 1fch_A 159 LRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFL----------EVKELFLAAVRLDPTSIDPDVQCGLGVLF 227 (368)
T ss_dssp HHTSTTTGGGCC---------------CTTHHHH-HHHHHH----------HHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHH----------HHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence 999999988765 355555 667776 899999999999999 899999999999
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
...|++ ++|+.+|+++++++|++ +.++..+|.+|...|++++|+.+|++++.++|.+..
T Consensus 228 ~~~g~~--------------------~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 286 (368)
T 1fch_A 228 NLSGEY--------------------DKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286 (368)
T ss_dssp HHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHcCCH--------------------HHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 998765 99999999999999998 699999999999999999999999999999987754
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc----------hhhhhHHHHHHHHHhcCHHHHHHH
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF----------YSQNVLMLGKTYMRLENYEQAAYY 297 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~----------~~~~~~~lg~~y~~~g~~~~A~~~ 297 (323)
... .++..+.. .|++++|+..|.+++.+.|+. ...++..+|.+|..+|++++|..+
T Consensus 287 ~~~-----------~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 287 SRY-----------NLGISCIN---LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHH-----------HHHHHHHH---HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHH-----------HHHHHHHH---CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 321 12222222 689999999999999998875 147899999999999999999999
Q ss_pred HHHhhCC
Q psy11738 298 LEMTKNY 304 (323)
Q Consensus 298 ~~~al~~ 304 (323)
+.++++.
T Consensus 353 ~~~~l~~ 359 (368)
T 1fch_A 353 DARDLST 359 (368)
T ss_dssp HTTCHHH
T ss_pred HHHHHHH
Confidence 9887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-23 Score=189.20 Aligned_cols=261 Identities=14% Similarity=0.105 Sum_probs=196.3
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS----------EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAY 79 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~ 79 (323)
.+..+..+...|..++..|++++|+..++++ ..+..++++..+|.++...| .+++++|+
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~~y~~A~ 158 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG-----------GNQNERAK 158 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHC-----------TTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHc-----------cccHHHHH
Confidence 4445556677888899999999998887764 14567888888888887776 23789999
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 80 FLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 80 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
.+|+++++++|++++++..+|.++..++.+... .+|++.++++++++|+++.++..+|..+...+..
T Consensus 159 ~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~-------~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~------ 225 (472)
T 4g1t_A 159 VCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS-------QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREE------ 225 (472)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCC-------CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHH-------HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhh------
Confidence 999999999999999999999887766554311 1678899999999999999999999887766532
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHH
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWY 239 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 239 (323)
.+++++|+++|++++.++|++ ..++..+|.+|...|++++|+..|+++++.+|++..... .+ +..
T Consensus 226 ----------~~~~~~a~~~~~~al~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~l---g~~ 290 (472)
T 4g1t_A 226 ----------GEEEGEGEKLVEEALEKAPGV-TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC-QI---GCC 290 (472)
T ss_dssp --------------CHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH-HH---HHH
T ss_pred ----------hhHHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH-HH---HHH
Confidence 245689999999999999998 699999999999999999999999999999999865432 11 111
Q ss_pred HHHHHHHhhcc---------CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 240 QRKIANAIFDT---------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 240 ~~~~a~~~~~~---------~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
........... ...+.+++|+..|.+++.++|.+ ..++..+|.+|...|++++|+.+|++++++.|.+..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL-FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT-CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch-hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 11000000000 00134677888888888888877 677888888888888888888888888877665443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-23 Score=193.62 Aligned_cols=245 Identities=13% Similarity=0.119 Sum_probs=181.9
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCc---------------------HHHHHHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLS---------------------DADKKQLI 75 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~---------------------~~~~~~~~ 75 (323)
...+..+...|++++|+..++++ ..|.++.++..++.+|...|++..+.. ...+.+++
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence 44588888999999999999998 457899999999999999987543110 00133444
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++|+..++++++.+|.++.++..+|.+|...|+++ +|.+.|+++++++|.+..++..+|.++...|+
T Consensus 356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 422 (597)
T 2xpi_A 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS----------EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE--- 422 (597)
T ss_dssp HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---
Confidence 55555555555555555555555555555555555 56666666666666666666666666666554
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITD 235 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 235 (323)
+++|+..|+++++..|++ ..++..+|.+|...|++++|+.+|++++..+|.+.....
T Consensus 423 -----------------~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----- 479 (597)
T 2xpi_A 423 -----------------HDQAISAYTTAARLFQGT-HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN----- 479 (597)
T ss_dssp -----------------HHHHHHHHHHHHHTTTTC-SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHH-----
T ss_pred -----------------HHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-----
Confidence 499999999999998887 688888999999999999999999999888887653311
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh------CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.++..+.. .|++++|+..|.+++.. +|+....++..+|.+|...|++++|+.+|++++++.|.
T Consensus 480 ------~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 480 ------ELGVVAFN---KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp ------HHHHHHHH---TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred ------HHHHHHHH---hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 12222222 68999999999999998 66643578999999999999999999999999999775
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=166.70 Aligned_cols=171 Identities=12% Similarity=0.115 Sum_probs=159.3
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
+++.-++..|..++..|+|++|+..++++ .+|++++++..+|.+|...|+ +++|+..+.+++..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------------~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL-------------PNDAIESLKKFVVLD 69 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhcC
Confidence 45566789999999999999999999998 599999999999999999885 466999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|+++.++..+|.++...+++. .+...+.++++++|+++.++..+|.++...|++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~----------~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~---------------- 123 (184)
T 3vtx_A 70 TTSAEAYYILGSANFMIDEKQ----------AAIDALQRAIALNTVYADAYYKLGLVYDSMGEH---------------- 123 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------------
T ss_pred chhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc----------------
Confidence 999999999999999999998 888999999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+..|+++++++|++ +.+++++|.+|..+|++++|+.+|+++++++|++.
T Consensus 124 ----~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 124 ----DKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp ----HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred ----hhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 99999999999999998 79999999999999999999999999999998753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=177.47 Aligned_cols=229 Identities=15% Similarity=0.091 Sum_probs=193.1
Q ss_pred hhhHHHhhccHHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS-E-----YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY 93 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~-~-----~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 93 (323)
.+..+...|++++|+..++++ . .|.++.+++.+|.+|...|+ +++|+.+++++++++|.++
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~al~~~~~~~ 77 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL-------------RALARNDFSQALAIRPDMP 77 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCCCCH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc-------------HHHHHHHHHHHHHcCCCcH
Confidence 344555679999999999987 2 35678899999999999885 4679999999999999999
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
.++..+|.++...|++. +|+.+|+++++++|+++.++..+|.++...|++
T Consensus 78 ~~~~~la~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-------------------- 127 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFD----------AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD-------------------- 127 (275)
T ss_dssp HHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHccCHH----------HHHHHHHHHHhcCccccHHHHHHHHHHHHhccH--------------------
Confidence 99999999999999999 899999999999999999999999999998765
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
++|+..|+++++++|++ ......++ ++...|++++|+.++++++...|.+..... ++...+ ..
T Consensus 128 ~~A~~~~~~a~~~~~~~-~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~~~~~~---~~ 190 (275)
T 1xnf_A 128 KLAQDDLLAFYQDDPND-PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWN------------IVEFYL---GN 190 (275)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHH------------HHHHHT---TS
T ss_pred HHHHHHHHHHHHhCCCC-hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHH------------HHHHHH---Hh
Confidence 99999999999999997 45555555 447779999999999999998887643211 111222 25
Q ss_pred CcHHHHHHHHHHHHhhCCcch---hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 254 SSYEEALKYFLEAEKQHPLFY---SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
++.++|+..+.+++...|... ...++.+|.+|..+|++++|+.+|++++.++|++
T Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 678999999999998887421 4778999999999999999999999999998864
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=168.94 Aligned_cols=194 Identities=14% Similarity=0.095 Sum_probs=165.3
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC-CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP-DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
|.++.+++..|.++...|++. +|+..|.++++++| .+..+++.+|.++...|++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~--------------- 58 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYA----------VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKY--------------- 58 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCH---------------
T ss_pred ccCHHHHHHHHHHHHHccCHH----------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcH---------------
Confidence 456789999999999999999 89999999999999 9999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|+.+|+++++++|++ +.++..+|.+|..+|++++|+.+|+++++++|++..... .+......++....
T Consensus 59 -----~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 59 -----KEAADYFDIAIKKNYNL-ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEK----LYAIYYLKEGQKFQ 128 (228)
T ss_dssp -----HHHHHHHHHHHHTTCSH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhCcch-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH----HHHHHHHHHhHHHH
Confidence 99999999999999997 799999999999999999999999999999998863211 01111222333333
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCc--chhhhhHHHHHHHHHhcCH---------------------------HHHHHHHH
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENY---------------------------EQAAYYLE 299 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~--~~~~~~~~lg~~y~~~g~~---------------------------~~A~~~~~ 299 (323)
. .|++++|+..|.+++.++|+ + +.+++.+|.+|...|+. ++|+.+|+
T Consensus 129 ~---~~~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 204 (228)
T 4i17_A 129 Q---AGNIEKAEENYKHATDVTSKKWK-TDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLG 204 (228)
T ss_dssp H---TTCHHHHHHHHHHHTTSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---hccHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 68999999999999999999 8 79999999999999999 99999999
Q ss_pred HhhCCCChhH-HHHHHHHHHhhhc
Q psy11738 300 MTKNYPAVQE-ATKLLEKAKSYLK 322 (323)
Q Consensus 300 ~al~~~~~~~-~~~~l~~~~~~~~ 322 (323)
++++++|++. ...++.+++..++
T Consensus 205 ~a~~l~p~~~~~~~~l~~i~~~~k 228 (228)
T 4i17_A 205 EAVTLSPNRTEIKQMQDQVKAMIK 228 (228)
T ss_dssp HHHHHCTTCHHHHHHHHHHHTTC-
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhC
Confidence 9999988754 4578888776553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=192.65 Aligned_cols=223 Identities=14% Similarity=0.063 Sum_probs=187.0
Q ss_pred cHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh
Q psy11738 29 QFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEK 106 (323)
Q Consensus 29 ~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 106 (323)
++++|+..+... ..|.++.+++.+|.+|...|++. ++|+.+++++++++|+++.++..+|.++...
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 150 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYS------------PEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCC------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccH------------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 466777777765 48889999999999999888541 5599999999999999999999999999999
Q ss_pred hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q psy11738 107 ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 186 (323)
|++. +|+++|+++++++|+ +.++..+|.++...+.-. ..... +++++|+.+|++++++
T Consensus 151 g~~~----------~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~-~~~~~----------g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 151 GDVT----------SAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDS-GDEHS----------RHVMDSVRQAKLAVQM 208 (474)
T ss_dssp TCHH----------HHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSC-HHHHH----------HHHHHHHHHHHHHHHH
T ss_pred CCHH----------HHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCC-hhhhh----------hhHHHHHHHHHHHHHh
Confidence 9999 899999999999999 799999999998871000 00000 1339999999999999
Q ss_pred CCCchhHHHHHHHHHHHHc--------CCHHHHHHHHHHHhCCCC---CCchhhhhhhcchhHHHHHHHHHhhccCCCCc
Q psy11738 187 HPLFYSQNVLMLGKTYMRL--------ENYEQAAYYLEMTKNYPV---KQDKDQCFEITDMPWYQRKIANAIFDTLPTSS 255 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~--------g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 255 (323)
+|++ ..+++.+|.+|... |++++|+.+|++++.++| .+..... .++..+.. .|+
T Consensus 209 ~p~~-~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-----------~lg~~~~~---~g~ 273 (474)
T 4abn_A 209 DVLD-GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL-----------NRATLHKY---EES 273 (474)
T ss_dssp CTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHH-----------HHHHHHHH---TTC
T ss_pred CCCC-HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHH-----------HHHHHHHH---cCC
Confidence 9998 69999999999999 999999999999999998 5543211 22222222 689
Q ss_pred HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
+++|+..|.+++.++|++ ..++..+|.++..+|++++|+..+.+.
T Consensus 274 ~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998 799999999999999999999887654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-23 Score=171.86 Aligned_cols=207 Identities=18% Similarity=0.142 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
.+..++.+|.++...|+ +++|+.+++++++.+|.++.++..+|.++...|++. +|+.
T Consensus 22 ~~~~~~~~a~~~~~~~~-------------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~----------~A~~ 78 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGD-------------YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELE----------RALA 78 (243)
T ss_dssp ---------------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHH----------HHHH
T ss_pred HHHHHHHHHHHHHHhhC-------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH----------HHHH
Confidence 35566677777777664 456899999999999999999999999999999998 8999
Q ss_pred HHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11738 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204 (323)
Q Consensus 125 ~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~ 204 (323)
.|+++++++|+++.++..+|.++...|++ ++|+..|+++++++|++ ..++..+|.++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 79 FYDKALELDSSAATAYYGAGNVYVVKEMY--------------------KEAKDMFEKALRAGMEN-GDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHTCCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHhccH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 99999999999999999999999988765 99999999999999997 6999999999999
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHH
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 284 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~ 284 (323)
.|++++|+.++++++..+|.+..... .++..++. .|++++|+..|.+++..+|+. +..+..+|.+
T Consensus 138 ~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 202 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVELNENDTEARF-----------QFGMCLAN---EGMLDEALSQFAAVTEQDPGH-ADAFYNAGVT 202 (243)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHH---HTCCHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCccHHHHH-----------HHHHHHHH---cCCHHHHHHHHHHHHHhCccc-HHHHHHHHHH
Confidence 99999999999999999887654321 12222222 578999999999999999998 7899999999
Q ss_pred HHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 285 YMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 285 y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
|...|++++|..+|++++++.|++..
T Consensus 203 ~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 203 YAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHccCHHHHHHHHHHHHccCcchHH
Confidence 99999999999999999999887654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=169.52 Aligned_cols=212 Identities=18% Similarity=0.148 Sum_probs=187.1
Q ss_pred CCCCC-HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhH
Q psy11738 41 EYKED-VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQL 119 (323)
Q Consensus 41 ~~~~~-~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (323)
.+|.+ +.+++.+|.++...|++.. |+.+++++++.+|.++.++..+|.++...|++.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~-------------A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~--------- 88 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQ-------------AKVPLRKALEIDPSSADAHAALAVVFQTEMEPK--------- 88 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGG-------------GHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH---------
T ss_pred cchHHHHHHHHHHHHHHHHcCChHH-------------HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH---------
Confidence 45655 7889999999999987654 899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh--cCCCchhHHHHH
Q psy11738 120 ETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK--QHPLFYSQNVLM 197 (323)
Q Consensus 120 ~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~ 197 (323)
+|.+.|.++++++|.++.++..+|.++...|++ ++|+.+|+++++ ..|.+ ..++..
T Consensus 89 -~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~~~~~~~~~~~-~~~~~~ 146 (252)
T 2ho1_A 89 -LADEEYRKALASDSRNARVLNNYGGFLYEQKRY--------------------EEAYQRLLEASQDTLYPER-SRVFEN 146 (252)
T ss_dssp -HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHTTCTTCTTH-HHHHHH
T ss_pred -HHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH--------------------HHHHHHHHHHHhCccCccc-HHHHHH
Confidence 899999999999999999999999999988765 999999999999 88886 689999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhh
Q psy11738 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 277 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~ 277 (323)
+|.+|...|++++|+.++++++..+|.+..... .++..+.. .|++++|+..|.+++...|+. ...
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~la~~~~~---~g~~~~A~~~~~~~~~~~~~~-~~~ 211 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL-----------EMADLLYK---EREYVPARQYYDLFAQGGGQN-ARS 211 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH-----------HHHHHHHH---TTCHHHHHHHHHHHHTTSCCC-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHH-----------HHHHHHHH---cCCHHHHHHHHHHHHHhCcCc-HHH
Confidence 999999999999999999999999987643221 22222222 689999999999999999988 788
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
+..++.+|...|++++|..++++++++.|++...
T Consensus 212 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 212 LLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999999998876543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-23 Score=172.05 Aligned_cols=220 Identities=13% Similarity=0.040 Sum_probs=170.9
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
+..+..++..|..++..|++++|+..++++ ..|.++.++..+|.+|...|+ +++|+.+++++++.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNE-------------LERALAFYDKALEL 86 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHc
Confidence 344466788999999999999999999987 589999999999999998885 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|.++.++..+|.++...|++. +|.+.++++++++|.++.++..+|.++...|++
T Consensus 87 ~~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------- 141 (243)
T 2q7f_A 87 DSSAATAYYGAGNVYVVKEMYK----------EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQP--------------- 141 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCH---------------
T ss_pred CCcchHHHHHHHHHHHHhccHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH---------------
Confidence 9999999999999999999998 899999999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
++|+..|++++++.|++ ..++..+|.++...|++++|+.++++++..+|.+..... .++..+.
T Consensus 142 -----~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~la~~~~ 204 (243)
T 2q7f_A 142 -----KLALPYLQRAVELNEND-TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY-----------NAGVTYA 204 (243)
T ss_dssp -----HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHH
T ss_pred -----HHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH-----------HHHHHHH
Confidence 99999999999999997 699999999999999999999999999999887654211 1222222
Q ss_pred ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhc
Q psy11738 249 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289 (323)
Q Consensus 249 ~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g 289 (323)
. .|++++|+..|++++.++|++ ..++..++.+....|
T Consensus 205 ~---~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 205 Y---KENREKALEMLDKAIDIQPDH-MLALHAKKLLGHHHH 241 (243)
T ss_dssp H---TTCTTHHHHHHHHHHHHCTTC-HHHHHHHTC------
T ss_pred H---ccCHHHHHHHHHHHHccCcch-HHHHHHHHHHHhhcc
Confidence 2 688999999999999999998 788887777665444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-22 Score=166.09 Aligned_cols=211 Identities=9% Similarity=0.058 Sum_probs=174.9
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCC-CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYK-EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~-~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
++.++..++..|..++..|++++|+..++++ ..| .+..+++.+|.+|..+|+ +++|+.++++++
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~al 69 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK-------------YKEAADYFDIAI 69 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc-------------HHHHHHHHHHHH
Confidence 3445688999999999999999999999987 466 888999999999999885 467999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh-------hHHHHHhhHHHHhcCCcHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS-------TTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~-------~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
+++|+++.++..+|.++..+|++. +|+..|+++++++|+++ .++..+|.++...|++
T Consensus 70 ~~~p~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~------ 133 (228)
T 4i17_A 70 KKNYNLANAYIGKSAAYRDMKNNQ----------EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI------ 133 (228)
T ss_dssp HTTCSHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH------
T ss_pred HhCcchHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH------
Confidence 999999999999999999999999 89999999999999999 5578888887777654
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchh
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMP 237 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 237 (323)
++|+.+|+++++++|+ + +.+++.+|.+|...|+ ..++++..+.+.+..... ..
T Consensus 134 --------------~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~~-~~---- 188 (228)
T 4i17_A 134 --------------EKAEENYKHATDVTSKKWK-TDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKYA-SE---- 188 (228)
T ss_dssp --------------HHHHHHHHHHTTSSCHHHH-HHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHHH-HH----
T ss_pred --------------HHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHHH-HH----
Confidence 9999999999999999 8 6999999999987664 456677776555432111 00
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHH
Q psy11738 238 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 286 (323)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~ 286 (323)
. .. ..+.|++|+.+|+++++++|++ ..+...++.+..
T Consensus 189 -~-----~~-----~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~i~~ 225 (228)
T 4i17_A 189 -K-----AK-----ADAAFKKAVDYLGEAVTLSPNR-TEIKQMQDQVKA 225 (228)
T ss_dssp -H-----HH-----HHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHT
T ss_pred -H-----HH-----HHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHH
Confidence 0 00 0356899999999999999998 788877777653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=171.73 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
+++.++..|.++...|+ +++|+.+++++++.+|.++.++..+|.++...|++. +|+.
T Consensus 2 n~~~~~~~a~~~~~~~~-------------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~----------~A~~ 58 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNN-------------YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYD----------LAQK 58 (272)
T ss_dssp ---CHHHHHHHHHTTTC-------------HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHH----------HHHH
T ss_pred cHHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH----------HHHH
Confidence 45678889999988885 567999999999999999999999999999999999 8999
Q ss_pred HHHHHHccCCCChhH----HHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 125 HMNKAIELKPDDSTT----LFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 125 ~~~~al~l~p~~~~~----~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.++++++ .|.++.. +..+|.++...|++ ++|+.+|+++++++|++ +.++..+|.
T Consensus 59 ~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~-~~~~~~l~~ 116 (272)
T 3u4t_A 59 DIETYFS-KVNATKAKSADFEYYGKILMKKGQD--------------------SLAIQQYQAAVDRDTTR-LDMYGQIGS 116 (272)
T ss_dssp HHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-THHHHHHHH
T ss_pred HHHHHHh-ccCchhHHHHHHHHHHHHHHHcccH--------------------HHHHHHHHHHHhcCccc-HHHHHHHHH
Confidence 9999999 5555544 89999999998765 99999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
+|...|++++|+.+|++++.++|.+..... .++...+. .+++++|+..|.++++++|++ ...++.
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~l~~~~~~---~~~~~~A~~~~~~a~~~~p~~-~~~~~~ 181 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFY-----------ELGQAYYY---NKEYVKADSSFVKVLELKPNI-YIGYLW 181 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCSSCCCHHHHH-----------HHHHHHHH---TTCHHHHHHHHHHHHHHSTTC-HHHHHH
T ss_pred HHHHccCHHHHHHHHHHHhhcCCCcHHHHH-----------HHHHHHHH---HHHHHHHHHHHHHHHHhCccc-hHHHHH
Confidence 999999999999999999999988764322 12211111 358999999999999999998 799999
Q ss_pred HHHHHHHhcC---HHHHHHHHHHhhCCC
Q psy11738 281 LGKTYMRLEN---YEQAAYYLEMTKNYP 305 (323)
Q Consensus 281 lg~~y~~~g~---~~~A~~~~~~al~~~ 305 (323)
+|.++..+|+ +++|+.+|++++++.
T Consensus 182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 182 RARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 9999999999 999999999999885
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=198.10 Aligned_cols=174 Identities=18% Similarity=0.149 Sum_probs=157.4
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
-.|++++++.++|.++..+|+++ +|+.+|++|++++|+++.++++||.++..+|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~----------eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~-------------- 59 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIE----------EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL-------------- 59 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH--------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--------------
Confidence 46999999999999999999999 999999999999999999999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHh
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAI 247 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 247 (323)
++|+.+|+++++++|++ +.+++++|.+|..+|++++|+++|+++++++|++..... .++..+
T Consensus 60 ------~eA~~~~~~Al~l~P~~-~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~-----------~Lg~~~ 121 (723)
T 4gyw_A 60 ------QEALMHYKEAIRISPTF-ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS-----------NLASIH 121 (723)
T ss_dssp ------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHH
T ss_pred ------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-----------HHHHHH
Confidence 99999999999999998 799999999999999999999999999999999865422 122222
Q ss_pred hccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.. .|++++|+..|+++++++|++ +.++.+||.+|..+|++++|.+.|++++++.|+
T Consensus 122 ~~---~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 122 KD---SGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HH---TTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HH---cCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 22 689999999999999999999 899999999999999999999999999988665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=188.41 Aligned_cols=238 Identities=14% Similarity=0.143 Sum_probs=207.6
Q ss_pred hhhHHHHHHhhhHHHh---hccHHHHHHHHHhC-C--------C-------CCCHHHHHHHHHHHHHhcccCCCCcHHHH
Q psy11738 11 SKVSEEFLKKSDDLFE---EQQFEEVNKMLESS-E--------Y-------KEDVEIIWRLVRVKYNLATHSSSLSDADK 71 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~-~--------~-------~~~~~~~~~la~~y~~~~~~~~~~~~~~~ 71 (323)
|......+..+..++. .|++++|+..++++ . . |.++.++..+|.++...|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 252 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND---------- 252 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC----------
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC----------
Confidence 4456777888888876 89999999999876 3 2 5567788888888888874
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
+++|+.+++++++.+|. +.++..+|.++...|++. +|+..++++++++|+++.++..+|.++...|
T Consensus 253 ---~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 253 ---PLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDST----------EYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp ---HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCT----------TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHH----------HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 56799999999999999 999999999999999999 7888999999999999999999999999988
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
++ ++|+..|+++++++|++ ..++..+|.+|...|++++|+.++++++..+|.+.....
T Consensus 319 ~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~- 376 (514)
T 2gw1_A 319 NY--------------------DQAGKDFDKAKELDPEN-IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPN- 376 (514)
T ss_dssp CT--------------------THHHHHHHHHHHTCSSC-SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHH-
T ss_pred CH--------------------HHHHHHHHHHHHhChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHH-
Confidence 77 99999999999999998 699999999999999999999999999999988764322
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhh------hhHHHHHHHHH---hcCHHHHHHHHHHhh
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ------NVLMLGKTYMR---LENYEQAAYYLEMTK 302 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~------~~~~lg~~y~~---~g~~~~A~~~~~~al 302 (323)
.++..+.. .|++++|+..|.+++...|+. .. +++.+|.+|.. .|++++|+.+|++++
T Consensus 377 ----------~la~~~~~---~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 377 ----------FFAEILTD---KNDFDKALKQYDLAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp ----------HHHHHHHH---TTCHHHHHHHHHHHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHH---CCCHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 12222222 689999999999999999987 44 89999999999 999999999999999
Q ss_pred CCCChh
Q psy11738 303 NYPAVQ 308 (323)
Q Consensus 303 ~~~~~~ 308 (323)
++.|..
T Consensus 443 ~~~~~~ 448 (514)
T 2gw1_A 443 KLDPRS 448 (514)
T ss_dssp HHCTTC
T ss_pred HhCccc
Confidence 998763
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-21 Score=165.67 Aligned_cols=234 Identities=16% Similarity=0.159 Sum_probs=195.9
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYN----LATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
.|.++...+..|..++..|++++|+..++++..|+++.+++.+|.+|.. .+ ++++|+.+++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~-------------~~~~A~~~~~~a 68 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEK-------------NLKKAASFYAKA 68 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC-------------CHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCC-------------CHHHHHHHHHHH
Confidence 3567788899999999999999999999998568999999999999988 55 457799999999
Q ss_pred ccCCCCcHHHHHHHHHHHHH----hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH----hcCCcHHH
Q psy11738 86 LPQHEDHYAIHKWLAVILNE----KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE----ITDMPWYQ 157 (323)
Q Consensus 86 l~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~----~~~~~~~~ 157 (323)
++.+ ++.+++.+|.++.. .+++. +|+.+|+++++.+ ++.+++.+|.++.. .+
T Consensus 69 ~~~~--~~~a~~~lg~~~~~g~~~~~~~~----------~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~------ 128 (273)
T 1ouv_A 69 CDLN--YSNGCHLLGNLYYSGQGVSQNTN----------KALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR------ 128 (273)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHH----------HHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC------
T ss_pred HHCC--CHHHHHHHHHHHhCCCCcccCHH----------HHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc------
Confidence 9986 89999999999998 88887 8999999999884 89999999999887 55
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 158 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
++++|+.+|+++++.+ + +.+++.+|.+|.. .+++++|+.+|+++++.++ ... ..
T Consensus 129 --------------~~~~A~~~~~~a~~~~--~-~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a-~~-- 186 (273)
T 1ouv_A 129 --------------DFKKAVEYFTKACDLN--D-GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--SPG-CF-- 186 (273)
T ss_dssp --------------CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHH-HH--
T ss_pred --------------CHHHHHHHHHHHHhcC--c-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHH-HH--
Confidence 4599999999999986 3 5789999999999 9999999999999998742 111 11
Q ss_pred cchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCCChh
Q psy11738 234 TDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~ 308 (323)
.++..+. +....+++++|+.+|+++++.+| +.+++.+|.+|.. .+++++|+.+|++++++.|..
T Consensus 187 --------~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 187 --------NAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp --------HHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred --------HHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 1222222 12236899999999999999977 4678999999999 999999999999999998764
Q ss_pred H
Q psy11738 309 E 309 (323)
Q Consensus 309 ~ 309 (323)
-
T Consensus 256 a 256 (273)
T 1ouv_A 256 A 256 (273)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=169.19 Aligned_cols=231 Identities=10% Similarity=0.002 Sum_probs=178.2
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC--CCCcH
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ--HEDHY 93 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 93 (323)
.....+..++..|++++|+..++.. .|.+..++..++..+...+ ++++|+..+++++.. +|+++
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~-------------~~~~A~~~l~~ll~~~~~P~~~ 101 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHS-------------RRDAIVAELDREMSRSVDVTNT 101 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCST-------------THHHHHHHHHHHHHSCCCCSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCC-------------cHHHHHHHHHHHHhcccCCCCH
Confidence 3344566666667777766655542 3334555555555555444 457799999998865 69999
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
.+++.+|.++...|+++ +|++.+.+ |+++.++..+|.++..+|++
T Consensus 102 ~~~~~la~~~~~~g~~~----------~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~-------------------- 146 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPD----------AALRTLHQ-----GDSLECMAMTVQILLKLDRL-------------------- 146 (291)
T ss_dssp HHHHHHHHHHHHTTCHH----------HHHHHHTT-----CCSHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHCCCHH----------HHHHHHhC-----CCCHHHHHHHHHHHHHCCCH--------------------
Confidence 99999999999999999 88888877 89999999999999998765
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHH--HHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLG--KTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTL 251 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg--~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 251 (323)
++|++.|+++++++|++ ....+..+ .++...|++++|+.+|+++++.+|.+..... .++.++..
T Consensus 147 ~~A~~~l~~~~~~~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~-----------~la~~~~~-- 212 (291)
T 3mkr_A 147 DLARKELKKMQDQDEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN-----------GQAACHMA-- 212 (291)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH-----------HHHHHHHH--
T ss_pred HHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH-----------HHHHHHHH--
Confidence 99999999999999986 33333323 3344458999999999999999998754321 11222222
Q ss_pred CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHH-HHHHHHHhhCCCChhHHH
Q psy11738 252 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ-AAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 252 ~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~-A~~~~~~al~~~~~~~~~ 311 (323)
.|++++|+..|++++.++|++ +.++.++|.++..+|+.++ +..+++++++++|++...
T Consensus 213 -~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 213 -QGRWEAAEGVLQEALDKDSGH-PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 789999999999999999999 8999999999999999987 568999999998886554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-22 Score=163.06 Aligned_cols=210 Identities=16% Similarity=0.072 Sum_probs=184.4
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
.|.++.+++.+|.++...|+ +++|+.+++++++.+|.++.++..+|.++...|++. +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~ 60 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQD-------------YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVND----------K 60 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------H
T ss_pred CcccHHHHHHHHHHHHHHhh-------------HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChH----------H
Confidence 57788999999999999885 467999999999999999999999999999999998 8
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHh-cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh--cCCCchhHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEI-TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK--QHPLFYSQNVLML 198 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~l 198 (323)
|.+++.++++++|+++.++..+|.++... |++ ++|+..|+++++ .+|.. ..++..+
T Consensus 61 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~~~-~~~~~~l 119 (225)
T 2vq2_A 61 AQESFRQALSIKPDSAEINNNYGWFLCGRLNRP--------------------AESMAYFDKALADPTYPTP-YIANLNK 119 (225)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH--------------------HHHHHHHHHHHTSTTCSCH-HHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH--------------------HHHHHHHHHHHcCcCCcch-HHHHHHH
Confidence 99999999999999999999999999988 766 999999999999 66765 5889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC-cchhhh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP-LFYSQN 277 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p-~~~~~~ 277 (323)
|.++...|++++|+.+++++++.+|.+..... .++..+.. .|++++|+..+.+++...| +. ...
T Consensus 120 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~-~~~ 184 (225)
T 2vq2_A 120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFK-----------ELARTKML---AGQLGDADYYFKKYQSRVEVLQ-ADD 184 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH-----------HHHHHHHH---HTCHHHHHHHHHHHHHHHCSCC-HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHH-----------HHHHHHHH---cCCHHHHHHHHHHHHHhCCCCC-HHH
Confidence 99999999999999999999999988754321 12222222 5899999999999999999 87 788
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
+..++.++...|+.+.|..+++.+.+..|++..
T Consensus 185 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 185 LLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 889999999999999999999999888777554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-22 Score=162.43 Aligned_cols=184 Identities=14% Similarity=0.098 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHH----------------HHHHHHHhhc
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKW----------------LAVILNEKAT 108 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~~~~~~~~~~ 108 (323)
.++.++..|..+...|+ +++|+.+|+++++++|+++.++++ +|.++...|+
T Consensus 3 ~~~~~~~~g~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQ-------------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC
Confidence 56777888888888774 577999999999999999999998 7777777777
Q ss_pred ccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC
Q psy11738 109 LEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 188 (323)
Q Consensus 109 ~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 188 (323)
+. +|+..|+++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|
T Consensus 70 ~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~P 119 (208)
T 3urz_A 70 YD----------KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE--------------------KDALRMYEKILQLEA 119 (208)
T ss_dssp HH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHCT
T ss_pred HH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcCC
Confidence 66 667777777777777777777777777766544 777777777777777
Q ss_pred CchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh
Q psy11738 189 LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 268 (323)
Q Consensus 189 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~ 268 (323)
++ +.+++++|.+|...|+.+ ...+...|.+++.
T Consensus 120 ~~-~~a~~~lg~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~ 152 (208)
T 3urz_A 120 DN-LAANIFLGNYYYLTAEQE----------------------------------------------KKKLETDYKKLSS 152 (208)
T ss_dssp TC-HHHHHHHHHHHHHHHHHH----------------------------------------------HHHHHHHHC---C
T ss_pred CC-HHHHHHHHHHHHHHhHHH----------------------------------------------HHHHHHHHHHHhC
Confidence 76 577777777665554322 2233444444443
Q ss_pred hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhh
Q psy11738 269 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSY 320 (323)
Q Consensus 269 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 320 (323)
..|. ...++.+|.++..+|++++|+.+|++++++.|+.+....|.++..+
T Consensus 153 ~~~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i~~~ 202 (208)
T 3urz_A 153 PTKM--QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRI 202 (208)
T ss_dssp CCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CCch--hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3332 3457888999999999999999999999999998888777776544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=179.85 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHhcccCCCC-cHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcc-cchHHHHHhHHHHH
Q psy11738 46 VEIIWRLVRVKYNLATHSSSL-SDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATL-EGTKARIQQLETIK 123 (323)
Q Consensus 46 ~~~~~~la~~y~~~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~ 123 (323)
.+.++.+...|+......... ......+.+++++..++.+....|.++.+++.+|.++...|++ . +|+
T Consensus 54 ~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~----------~A~ 123 (474)
T 4abn_A 54 VDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSP----------EAE 123 (474)
T ss_dssp HHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCH----------HHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHH----------HHH
Confidence 344555566666554333210 0123456689999999999999999999999999999999999 8 899
Q ss_pred HHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy11738 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 203 (323)
Q Consensus 124 ~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~ 203 (323)
++|+++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|+ . .++..+|.+|.
T Consensus 124 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~p~-~-~~~~~lg~~~~ 181 (474)
T 4abn_A 124 VLLSKAVKLEPELVEAWNQLGEVYWKKGDV--------------------TSAHTCFSGALTHCKN-K-VSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHTTCCC-H-HHHHHHHHHHT
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhhCCC-H-HHHHHHHHHHH
Confidence 999999999999999999999999998766 9999999999999999 3 99999999999
Q ss_pred Hc---------CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHHhhCC--
Q psy11738 204 RL---------ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD-TLPTSSYEEALKYFLEAEKQHP-- 271 (323)
Q Consensus 204 ~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~Al~~~~~a~~~~p-- 271 (323)
.. |++++|+.+|++++.++|++..... .++ ...... ++. ....+++++|+..|.+++.++|
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg---~~~~~~---~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY-ILG---NAYLSL---YFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-HHH---HHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH-HHH---HHHHHH---HHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 99 9999999999999999999865422 111 111110 000 0122789999999999999999
Q ss_pred -cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 272 -LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 272 -~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
++ +.+++.+|.+|..+|++++|+.+|+++++++|...
T Consensus 255 ~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 255 SSN-PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp GGC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 87 79999999999999999999999999999988744
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-21 Score=160.86 Aligned_cols=211 Identities=13% Similarity=0.055 Sum_probs=183.9
Q ss_pred hhhh-HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 10 VSKV-SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 10 ~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.|.. +..++..|..++..|++++|+..++++ ..|.++.++..+|.+|...|+ +++|+.++++++
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~a~ 98 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME-------------PKLADEEYRKAL 98 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHH
Confidence 3444 677899999999999999999999987 489999999999999998885 467999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc--cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE--LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
+.+|.++.++..+|.++...|++. +|.+++++++. ..|.++.++..+|.++...|++
T Consensus 99 ~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------- 157 (252)
T 2ho1_A 99 ASDSRNARVLNNYGGFLYEQKRYE----------EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKP----------- 157 (252)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCH-----------
T ss_pred HHCcCcHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCH-----------
Confidence 999999999999999999999998 89999999999 8899999999999999998765
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
++|+.+|+++++.+|++ ..++..+|.+|...|++++|+.++++++..+|.+..... . ++
T Consensus 158 ---------~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~----------~~ 216 (252)
T 2ho1_A 158 ---------AQAKEYFEKSLRLNRNQ-PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL-L----------GI 216 (252)
T ss_dssp ---------HHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHH-H----------HH
T ss_pred ---------HHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH-H----------HH
Confidence 99999999999999997 699999999999999999999999999999987654321 1 11
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhH
Q psy11738 245 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 279 (323)
Q Consensus 245 ~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~ 279 (323)
..+.. .|++++|+..+++++...|+. +....
T Consensus 217 ~~~~~---~g~~~~A~~~~~~~~~~~p~~-~~~~~ 247 (252)
T 2ho1_A 217 RLAKV---FEDRDTAASYGLQLKRLYPGS-LEYQE 247 (252)
T ss_dssp HHHHH---TTCHHHHHHHHHHHHHHCTTS-HHHHH
T ss_pred HHHHH---ccCHHHHHHHHHHHHHHCCCC-HHHHH
Confidence 11111 689999999999999999987 55443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-22 Score=192.02 Aligned_cols=175 Identities=13% Similarity=0.088 Sum_probs=162.0
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
.+..|+.++.+...|..+..+|++++|+..++++ .+|++++++..+|.+|..+|+ +++|+.+|++
T Consensus 2 pgs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~-------------~~eA~~~~~~ 68 (723)
T 4gyw_A 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-------------LQEALMHYKE 68 (723)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHH
Confidence 4567889999999999999999999999999998 599999999999999999885 5779999999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
|++++|+++.++.++|.++..+|+++ +|+++|+++++++|+++.++.++|.++...|++
T Consensus 69 Al~l~P~~~~a~~nLg~~l~~~g~~~----------~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~----------- 127 (723)
T 4gyw_A 69 AIRISPTFADAYSNMGNTLKEMQDVQ----------GALQCYTRAIQINPAFADAHSNLASIHKDSGNI----------- 127 (723)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------
Confidence 99999999999999999999999999 899999999999999999999999999998765
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++|+.+|+++++++|++ +.++.+||.+|..+|++++|++.+++++++.|+.
T Consensus 128 ---------~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 128 ---------PEAIASYRTALKLKPDF-PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp ---------HHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 99999999999999998 7999999999999999999999999999876543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-21 Score=165.01 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=185.1
Q ss_pred hhhHHHhhccHHHHHHHHHhC--CCCCC-HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS--EYKED-VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIH 96 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~--~~~~~-~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 96 (323)
.+..+|..|+|++|+..+++. ..|++ .+....++++|...|++ ++|+..++. .+|....++
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~-------------~~al~~~~~---~~~~~~~a~ 68 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKY-------------GVVLDEIKP---SSAPELQAV 68 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHSCT---TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCH-------------HHHHHHhcc---cCChhHHHH
Confidence 467788899999999999886 35555 56778889999998854 567877765 256677788
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHH
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE 174 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
..++..+...++.+ +|++.+++++.. +|+++.+++.+|.++...|++ +
T Consensus 69 ~~la~~~~~~~~~~----------~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~--------------------~ 118 (291)
T 3mkr_A 69 RMFAEYLASHSRRD----------AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP--------------------D 118 (291)
T ss_dssp HHHHHHHHCSTTHH----------HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH--------------------H
T ss_pred HHHHHHHcCCCcHH----------HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH--------------------H
Confidence 88888888887777 888999998875 699999999999999998765 9
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCC
Q psy11738 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTS 254 (323)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 254 (323)
+|+..|++ |++ ..++..+|.+|..+|++++|+..|++++..+|.+..... ..+|... .. ..|
T Consensus 119 ~Al~~l~~-----~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l----~~a~~~l-----~~---~~~ 180 (291)
T 3mkr_A 119 AALRTLHQ-----GDS-LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQL----ATAWVSL-----AA---GGE 180 (291)
T ss_dssp HHHHHHTT-----CCS-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHH-----HH---CTT
T ss_pred HHHHHHhC-----CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHH----HHHHHHH-----Hh---Cch
Confidence 99999998 777 699999999999999999999999999999887642111 0111111 11 258
Q ss_pred cHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 255 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
++++|+..|.+++..+|++ +.+++.+|.++..+|++++|..+|+++++++|+
T Consensus 181 ~~~eA~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 181 KLQDAYYIFQEMADKCSPT-LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998 799999999999999999999999999999887
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=154.81 Aligned_cols=213 Identities=14% Similarity=0.071 Sum_probs=183.3
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..|..+...+..|..++..|++++|+..++++ ..|.++.++..+|.+|...|+ +++|+.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~a~ 69 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV-------------NDKAQESFRQAL 69 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC-------------hHHHHHHHHHHH
Confidence 35677788899999999999999999999987 589999999999999998885 467999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHh-hcccchHHHHHhHHHHHHHHHHHHc--cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEK-ATLEGTKARIQQLETIKHHMNKAIE--LKPDDSTTLFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~al~--l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
+.+|.++.++..+|.++... |++. +|...++++++ ..|.+..++..+|.++...|++
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------- 129 (225)
T 2vq2_A 70 SIKPDSAEINNNYGWFLCGRLNRPA----------ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF---------- 129 (225)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCCHH----------HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH----------
T ss_pred HhCCCChHHHHHHHHHHHHhcCcHH----------HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH----------
Confidence 99999999999999999999 9998 89999999999 6677789999999999988765
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC-CCchhhhhhhcchhHHHHH
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPV-KQDKDQCFEITDMPWYQRK 242 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~ 242 (323)
++|+.+|+++++.+|++ ..++..+|.++...|++++|+.++++++..+| .+..... .+ ..+
T Consensus 130 ----------~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~---~~~--- 191 (225)
T 2vq2_A 130 ----------GLAEAYLKRSLAAQPQF-PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL-LG---WKI--- 191 (225)
T ss_dssp ----------HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH-HH---HHH---
T ss_pred ----------HHHHHHHHHHHHhCCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH-HH---HHH---
Confidence 99999999999999998 69999999999999999999999999999988 6544321 11 111
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 243 ~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
.. ..+++++|..+++.+...+|++ +.....
T Consensus 192 ----~~---~~~~~~~a~~~~~~~~~~~p~~-~~~~~~ 221 (225)
T 2vq2_A 192 ----AK---ALGNAQAAYEYEAQLQANFPYS-EELQTV 221 (225)
T ss_dssp ----HH---HTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred ----HH---hcCcHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence 11 1678999999999999999987 555443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-20 Score=163.09 Aligned_cols=226 Identities=8% Similarity=-0.067 Sum_probs=189.3
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHHh-------cccCCCCcHHHHHHHHHHHHHHHHhhcc-CCCCcHHHHHHHH
Q psy11738 31 EEVNKMLESS--EYKEDVEIIWRLVRVKYNL-------ATHSSSLSDADKKQLILSAYFLVYNALP-QHEDHYAIHKWLA 100 (323)
Q Consensus 31 ~~A~~~~~~~--~~~~~~~~~~~la~~y~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~ 100 (323)
++|+..++++ .+|.++++|+.+|..+... |+. +...+.+++|+..+++|++ ++|+++.++..+|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~------~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM------NNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCC------HHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccch------hhcccchHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 6788888887 4999999999999998754 432 2235567899999999999 7999999999999
Q ss_pred HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh-HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy11738 101 VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST-TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179 (323)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (323)
.++...|+++ +|+..|+++++++|.++. +|..+|.++...|++ ++|+..
T Consensus 107 ~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--------------------~~A~~~ 156 (308)
T 2ond_A 107 DYEESRMKYE----------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI--------------------KSGRMI 156 (308)
T ss_dssp HHHHHTTCHH----------HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH--------------------HHHHHH
T ss_pred HHHHhcCCHH----------HHHHHHHHHHhccccCccHHHHHHHHHHHHhcCH--------------------HHHHHH
Confidence 9999999888 899999999999999997 999999999888766 999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHH-cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHH
Q psy11738 180 FLEAEKQHPLFYSQNVLMLGKTYMR-LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEE 258 (323)
Q Consensus 180 ~~~al~~~p~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (323)
|+++++.+|.. ..++...+.+... .|++++|+.+|+++++.+|++..... ..+..+. ..|++++
T Consensus 157 ~~~a~~~~p~~-~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----------~~~~~~~---~~g~~~~ 221 (308)
T 2ond_A 157 FKKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL-----------AYIDYLS---HLNEDNN 221 (308)
T ss_dssp HHHHHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHHHH---TTCCHHH
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-----------HHHHHHH---HCCCHHH
Confidence 99999999987 5777666655433 79999999999999999998754321 1122222 2689999
Q ss_pred HHHHHHHHHhh---CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 259 ALKYFLEAEKQ---HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 259 Al~~~~~a~~~---~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
|+..|.+++.. .|+.....|..++..+...|+.++|...+.++++..|+
T Consensus 222 A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 99999999995 56433678999999999999999999999999999886
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=162.54 Aligned_cols=229 Identities=9% Similarity=-0.076 Sum_probs=187.6
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
.|..+..++..|..++..|++++|+..++++ .+|.++.++..+|.+|...|+ +++|+.+++++++
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~al~ 105 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-------------FDAAYEAFDSVLE 105 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC-------------HHHHHHHHHHHHh
Confidence 5677788899999999999999999999997 599999999999999999885 4679999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
++|.++.++..+|.++...|++. +|+..|+++++++|+++.....++.. ...|+
T Consensus 106 ~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~--------------- 159 (275)
T 1xnf_A 106 LDPTYNYAHLNRGIALYYGGRDK----------LAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD--------------- 159 (275)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---------------
T ss_pred cCccccHHHHHHHHHHHHhccHH----------HHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---------------
Confidence 99999999999999999999998 89999999999999999777666644 44454
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHh
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAI 247 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 247 (323)
+++|+..|.+++...|++ ... ..++.++...++.++|+..+++++...|....... .....++..+
T Consensus 160 -----~~~A~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~la~~~ 225 (275)
T 1xnf_A 160 -----EKQAKEVLKQHFEKSDKE-QWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLS-------ETNFYLGKYY 225 (275)
T ss_dssp -----HHHHHHHHHHHHHHSCCC-STH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH-------HHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCCcc-hHH-HHHHHHHHHhcCHHHHHHHHHHHhccccccccccc-------HHHHHHHHHH
Confidence 499999999999999986 344 45888899999999999999999998665321111 1112233333
Q ss_pred hccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHH
Q psy11738 248 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL 298 (323)
Q Consensus 248 ~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 298 (323)
.. .|++++|+..|++++.++|++ +...+.++..+|++++|+..|
T Consensus 226 ~~---~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LS---LGDLDSATALFKLAVANNVHN----FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---TTCHHHHHHHHHHHHTTCCTT----CHHHHHHHHHHHHHHHC----
T ss_pred HH---cCCHHHHHHHHHHHHhCCchh----HHHHHHHHHHHHHHHhhHHHH
Confidence 33 689999999999999999976 234588999999999999887
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-22 Score=176.16 Aligned_cols=256 Identities=16% Similarity=0.175 Sum_probs=187.1
Q ss_pred hcchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-C---------CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHH
Q psy11738 7 AKTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-E---------YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLIL 76 (323)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~---------~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~ 76 (323)
....|..+..++..|..++..|++++|+..++++ . .|..+.++..+|.+|...|++ +
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------------~ 86 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY-------------K 86 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH-------------H
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH-------------H
Confidence 4556777888899999999999999999999886 2 455678889999999988854 5
Q ss_pred HHHHHHHhhccC--------CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC--------CCChhHH
Q psy11738 77 SAYFLVYNALPQ--------HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK--------PDDSTTL 140 (323)
Q Consensus 77 ~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~--------p~~~~~~ 140 (323)
+|+.++++++.+ +|..+.++..+|.++...|++. +|..+|.+++++. |....++
T Consensus 87 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK----------EAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHH----------HHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 577777777766 4777889999999999999998 8888899998874 5667789
Q ss_pred HHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHcCCHHHHH
Q psy11738 141 FMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--------HPLFYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 141 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
..+|.++...|++ ++|+.+|++++++ +|.. ..++..+|.+|...|++++|+
T Consensus 157 ~~la~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 157 NNLALLCQNQGKY--------------------EEVEYYYQRALEIYQTKLGPDDPNV-AKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp HHHHHHHHTTTCH--------------------HHHHHHHHHHHHHHHHTSCTTCHHH-HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCH--------------------HHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHcCCHHHHH
Confidence 9999999888755 9999999999998 6664 578999999999999999999
Q ss_pred HHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 213 YYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 213 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
.++++++.+.|..............|.......... .....+.+.+|+..+.++...+|.. ..++..+|.+|...|++
T Consensus 216 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~ 294 (311)
T 3nf1_A 216 TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV-TTTLKNLGALYRRQGKF 294 (311)
T ss_dssp HHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHH-HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH-HHHHHHHHHHHHHCCCH
Confidence 999999975432110000000000011110000000 1122456778888899999889987 78999999999999999
Q ss_pred HHHHHHHHHhhCCCCh
Q psy11738 292 EQAAYYLEMTKNYPAV 307 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~ 307 (323)
++|+.+|++++++.|.
T Consensus 295 ~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 295 EAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999988664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=160.60 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=149.3
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHH----------------HHHHHHHhcccCCCCcHHHHHHH
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWR----------------LVRVKYNLATHSSSLSDADKKQL 74 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~----------------la~~y~~~~~~~~~~~~~~~~~~ 74 (323)
.+..++.+|..++..|++++|+..++++ .+|+++++++. +|.+|...|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~------------- 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN------------- 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC-------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC-------------
Confidence 5678899999999999999999999997 59999999999 9999998885
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCc
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMP 154 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 154 (323)
+++|+..++++++++|+++.++..+|.++...|++. +|+.+|+++++++|+++.+++.+|.+++..+..
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~- 138 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK----------DALRMYEKILQLEADNLAANIFLGNYYYLTAEQ- 138 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH-
Confidence 577999999999999999999999999999999999 899999999999999999999999998876532
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
....+...|.+++...|. ..+++.+|.++...|++++|+.+|+++++++|+.
T Consensus 139 -----------------~~~~~~~~~~~~~~~~~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 139 -----------------EKKKLETDYKKLSSPTKM--QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -----------------HHHHHHHHHC---CCCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred -----------------HHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 126778888888765444 3578889999999999999999999999999974
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=176.57 Aligned_cols=272 Identities=13% Similarity=0.080 Sum_probs=168.9
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCH----HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDV----EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~----~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
+.....++..|..++..|++++|+..++++ ..|++. .++..+|.+|...|++ ++|+.++++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~-------------~~A~~~~~~ 111 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY-------------NKAMQYHKH 111 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCH-------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHH
Confidence 456677889999999999999999999987 477776 5788999999888854 567888888
Q ss_pred hccC------CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc------CCCChhHHHHHhhHHHHhcC
Q psy11738 85 ALPQ------HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL------KPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 85 al~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l------~p~~~~~~~~lg~~~~~~~~ 152 (323)
++++ .|..+.++..+|.++...|++. +|..+|.+++++ .|....++..+|.++...|+
T Consensus 112 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD----------EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 8777 6888899999999999999998 888899999988 56677799999999999887
Q ss_pred -----------------CcHHHHHHHHH----------------hh--c--CCCCCCHHHHHHHHHHHHhcCCCch----
Q psy11738 153 -----------------MPWYQRKIANA----------------IF--D--TLPTSSYEEALKYFLEAEKQHPLFY---- 191 (323)
Q Consensus 153 -----------------~~~~~~~~~~~----------------~~--~--~~~~~~~~~A~~~~~~al~~~p~~~---- 191 (323)
+......+... .. + -...|++++|+.+|++++++.|...
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 41111100000 00 0 0123455555555555555543320
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC
Q psy11738 192 -SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH 270 (323)
Q Consensus 192 -~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~ 270 (323)
..++..+|.+|...|++++|+.+|++++.+.|....... .......++..+.. .|++++|+.+|.+++.+.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV-----EAQSCYSLGNTYTL---LHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHH
Confidence 014555555555555555555555555554433221111 01111222222222 455666666666665554
Q ss_pred Ccc-----hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHH
Q psy11738 271 PLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKL 313 (323)
Q Consensus 271 p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 313 (323)
+.. ...++..+|.+|..+|++++|..+|++++++.+.......
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 381 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXXX 381 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 432 0124555666666666666666666666655555444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=174.77 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=99.7
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKED----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
........++..|..++..|++++|+..++++ ..|.+ +.++..+|.+|...|++ ++|+.++
T Consensus 4 ~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A~~~~ 70 (406)
T 3sf4_A 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY-------------AKALEYH 70 (406)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCH-------------HHHHHHH
Confidence 34556677899999999999999999999987 47777 46788999999988854 5577777
Q ss_pred HhhccC------CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC------hhHHHHHhhHHHHh
Q psy11738 83 YNALPQ------HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD------STTLFMLGMWCFEI 150 (323)
Q Consensus 83 ~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~------~~~~~~lg~~~~~~ 150 (323)
++++.+ .|..+.++..+|.++...|++. +|..++.+++++.|.. ..++..+|.++...
T Consensus 71 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 71 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD----------EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 777666 5667888999999999999998 8899999999987764 44899999999998
Q ss_pred cC
Q psy11738 151 TD 152 (323)
Q Consensus 151 ~~ 152 (323)
|+
T Consensus 141 g~ 142 (406)
T 3sf4_A 141 GK 142 (406)
T ss_dssp HH
T ss_pred CC
Confidence 87
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=175.17 Aligned_cols=232 Identities=13% Similarity=0.199 Sum_probs=181.5
Q ss_pred hhhHHHhhccHHHHHHHHHhC-C----CCC---CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC-
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS-E----YKE---DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE- 90 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~-~----~~~---~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p- 90 (323)
.|..++..|++++|+..++++ . .++ .+.++..+|.+|..+|++ ++|+.++++|+++.+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~-------------~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQT-------------YFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHHHHh
Confidence 899999999999999999986 2 233 467889999999998864 557777777777644
Q ss_pred ------CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh------hHHHHHhhHHHHhcCCcHHHH
Q psy11738 91 ------DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS------TTLFMLGMWCFEITDMPWYQR 158 (323)
Q Consensus 91 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~------~~~~~lg~~~~~~~~~~~~~~ 158 (323)
..+.++..+|.++..+|+++ +|.++|.+++++.|... .++.++|.++...|++
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~----- 240 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLDLKQYE----------DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY----- 240 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred CccchHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH-----
Confidence 34558889999999999998 89999999999876554 4889999999998765
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHh-----cC-CCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEK-----QH-PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
++|+.+|+++++ .+ |.. +.++.++|.+|..+|++++|+.++++++.+.+.........
T Consensus 241 ---------------~~A~~~~~~al~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 241 ---------------EDAIPYFKRAIAVFEESNILPSL-PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp ---------------HHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999 45 665 68899999999999999999999999998854322211100
Q ss_pred hcchhHHHHHHHHHhhccCCCCc---HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSS---YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~---~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
. ...++.... ..++ +++|+..+++. ...|.. ..++..+|.+|..+|++++|..+|++++++..
T Consensus 305 -----~-~~~l~~~~~---~~~~~~~~~~al~~~~~~-~~~~~~-~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 305 -----E-FEFLKSLYL---SGPDEEAIQGFFDFLESK-MLYADL-EDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp -----H-HHHHHHHHT---SSCCHHHHHHHHHHHHHT-TCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -----H-HHHHHHHHh---CCCcHHHHHHHHHHHHHC-cCHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 0 011222222 2455 88999999887 334444 57788999999999999999999999987744
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=156.74 Aligned_cols=195 Identities=15% Similarity=0.111 Sum_probs=169.7
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
.++.+..+|.++...|+ +++|+.+++++++.+ .++.++..+|.++...|++. +|+.
T Consensus 4 ~a~~~~~~g~~~~~~~~-------------~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~----------~A~~ 59 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQ-------------FDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYE----------TAIS 59 (258)
T ss_dssp HHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHH----------HHHH
T ss_pred HHHHHHHHHHHHHHhcc-------------HHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHH----------HHHH
Confidence 46788889999988885 577999999999999 89999999999999999999 8999
Q ss_pred HHHHHHccCCCC-------hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHH
Q psy11738 125 HMNKAIELKPDD-------STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 197 (323)
Q Consensus 125 ~~~~al~l~p~~-------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 197 (323)
.+.++++++|++ +.++..+|.++...|++ ++|+.+|+++++++|+
T Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~a~~~~~~-------- 111 (258)
T 3uq3_A 60 TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL--------------------KKTIEYYQKSLTEHRT-------- 111 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCCC--------
T ss_pred HHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH--------------------HHHHHHHHHHHhcCch--------
Confidence 999999999987 78999999999998765 9999999999999987
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhh
Q psy11738 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN 277 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~ 277 (323)
+.++...|++++|+..+++++..+|.+..... .++..++. .|++++|+..|.+++..+|++ +.+
T Consensus 112 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~-~~~ 175 (258)
T 3uq3_A 112 -ADILTKLRNAEKELKKAEAEAYVNPEKAEEAR-----------LEGKEYFT---KSDWPNAVKAYTEMIKRAPED-ARG 175 (258)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-----------HHHHHHHH---TTCHHHHHHHHHHHHHHCTTC-HHH
T ss_pred -hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHH-----------HHHHHHHH---hcCHHHHHHHHHHHHhcCccc-HHH
Confidence 24566778899999999999998876543211 22222332 689999999999999999998 799
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 278 VLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 278 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+..+|.+|...|++++|+.+|++++++.|.
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 999999999999999999999999999877
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-21 Score=166.54 Aligned_cols=247 Identities=16% Similarity=0.116 Sum_probs=151.5
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKED----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
....++..|..++..|++++|+..++++ ..|.+ +.++..+|.+|...|++ ++|+.++++++
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al 70 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY-------------AKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHH
Confidence 4567889999999999999999999987 47777 46788999999988854 55777777777
Q ss_pred cC------CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh------HHHHHhhHHHHhcC--
Q psy11738 87 PQ------HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST------TLFMLGMWCFEITD-- 152 (323)
Q Consensus 87 ~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~------~~~~lg~~~~~~~~-- 152 (323)
.+ .|..+.++..+|.++...|++. +|..++.+++++.|.... ++..+|.++...|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 71 TLARTIGDQLGEAKASGNLGNTLKVLGNFD----------EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccc
Confidence 66 5667888999999999999998 888999999998776543 88899999998887
Q ss_pred -----------CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHcCCHHHHHHHH
Q psy11738 153 -----------MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYL 215 (323)
Q Consensus 153 -----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 215 (323)
...... .+++|+.+|++++++ .|. ...++..+|.+|...|++++|+.++
T Consensus 141 ~~~~~~~~~~~~~~a~~-------------~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 206 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRN-------------ALQAAVDLYEENLSLVTALGDRAA-QGRAFGNLGNTHYLLGNFRDAVIAH 206 (338)
T ss_dssp SSSSCC----CCHHHHH-------------HHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccchhhhhhhhhhhHHH-------------HHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 100000 025555555555543 111 1234555555555555555555555
Q ss_pred HHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc-----hhhhhHHHHHHHHHhcC
Q psy11738 216 EMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 216 ~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~-----~~~~~~~lg~~y~~~g~ 290 (323)
++++.+.+....... .......++..+.. .|++++|+..+.+++.+.|.. ...++..+|.+|...|+
T Consensus 207 ~~a~~~~~~~~~~~~-----~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 207 EQRLLIAKEFGDKAA-----ERRAYSNLGNAYIF---LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHTCHHH-----HHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCChHH-----HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 555554332211000 00001111111111 345555555555555443321 01334455555555555
Q ss_pred HHHHHHHHHHhhCC
Q psy11738 291 YEQAAYYLEMTKNY 304 (323)
Q Consensus 291 ~~~A~~~~~~al~~ 304 (323)
+++|..++++++.+
T Consensus 279 ~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 279 YEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-20 Score=156.32 Aligned_cols=191 Identities=10% Similarity=-0.007 Sum_probs=157.1
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 86 LPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 86 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
.+++|.++..++.+|..+...|++. +|+..|+++++..|++ +.+++.+|.+++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~----------~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~--------- 68 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYD----------RAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEY--------- 68 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHH----------HHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCH---------
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcH---------
Confidence 4578999999999999999999999 8999999999999999 88999999999998765
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHH--------cCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 163 AIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMR--------LENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~y~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
++|+..|++++++.|++ .+.+++.+|.++.. .|++++|+..|++++...|++.......
T Consensus 69 -----------~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 137 (261)
T 3qky_A 69 -----------LLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT 137 (261)
T ss_dssp -----------HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred -----------HHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence 99999999999998864 24689999999999 9999999999999999999886443210
Q ss_pred --h----cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc--hhhhhHHHHHHHHHh----------cCHHHH
Q psy11738 233 --I----TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF--YSQNVLMLGKTYMRL----------ENYEQA 294 (323)
Q Consensus 233 --~----~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~--~~~~~~~lg~~y~~~----------g~~~~A 294 (323)
+ ..+......++..++. .|++++|+..|++++...|+. .+.+++.+|.+|..+ |++++|
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYER---RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 0 0000001223333333 789999999999999999984 146899999999987 999999
Q ss_pred HHHHHHhhCCCChhH
Q psy11738 295 AYYLEMTKNYPAVQE 309 (323)
Q Consensus 295 ~~~~~~al~~~~~~~ 309 (323)
+.+|+++++..|++.
T Consensus 215 ~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 215 VELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHCCCCh
Confidence 999999999988753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=159.96 Aligned_cols=228 Identities=12% Similarity=0.012 Sum_probs=167.8
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC------cHHHHHHHHHH
Q psy11738 29 QFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED------HYAIHKWLAVI 102 (323)
Q Consensus 29 ~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~ 102 (323)
++++|+..+.++ |.+|...|++ ++|+.+|++++++.+. .+.++..+|.+
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~-------------~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 86 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKEL-------------NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKC 86 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCT-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCH-------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 477777766653 6677777754 6688888888887532 36788999999
Q ss_pred HHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC------hhHHHHHhhHHHHh-cCCcHHHHHHHHHhhcCCCCCCHHH
Q psy11738 103 LNEKATLEGTKARIQQLETIKHHMNKAIELKPDD------STTLFMLGMWCFEI-TDMPWYQRKIANAIFDTLPTSSYEE 175 (323)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~------~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|..+|++. +|+.+|++|+++.|.. ..++..+|.++... |++ ++
T Consensus 87 ~~~~g~~~----------~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~--------------------~~ 136 (292)
T 1qqe_A 87 FKSGGNSV----------NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY--------------------AK 136 (292)
T ss_dssp HHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH--------------------HH
T ss_pred HHHCCCHH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCH--------------------HH
Confidence 99999998 8999999999998764 45788999998885 765 99
Q ss_pred HHHHHHHHHhcCCCch-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc
Q psy11738 176 ALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT 250 (323)
Q Consensus 176 A~~~~~~al~~~p~~~-----~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 250 (323)
|+.+|++++++.|+.. ..++.++|.+|..+|++++|+.+|++++.++|.+...... .......++.++..
T Consensus 137 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~lg~~~~~- 211 (292)
T 1qqe_A 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS----LKDYFLKKGLCQLA- 211 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG----HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH----HHHHHHHHHHHHHH-
Confidence 9999999999977531 3568899999999999999999999999999887543210 00011112222222
Q ss_pred CCCCcHHHHHHHHHHHHhhCCcchhhh-----hHHHHHHHH--HhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 251 LPTSSYEEALKYFLEAEKQHPLFYSQN-----VLMLGKTYM--RLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 251 ~~~~~~~~Al~~~~~a~~~~p~~~~~~-----~~~lg~~y~--~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
.|++++|+.+|.+++.++|++ ... +..++.++. ..+++++|+..|.+++.++|.. ..++.+++..+
T Consensus 212 --~g~~~~A~~~~~~al~l~p~~-~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~--~~~~~~~k~~~ 284 (292)
T 1qqe_A 212 --ATDAVAAARTLQEGQSEDPNF-ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK--ITILNKIKESI 284 (292)
T ss_dssp --TTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH--HHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH--HHHHHHHHHHh
Confidence 689999999999999999986 332 445666665 5678999999999999998865 35555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=156.88 Aligned_cols=175 Identities=10% Similarity=0.038 Sum_probs=146.4
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKED---VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
...+.++..++..|..++..|+|++|+..++++ ..|++ +++++.+|.+|...|+ +++|+..+
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~-------------~~~A~~~~ 75 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE-------------YLLAASEY 75 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC-------------HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc-------------HHHHHHHH
Confidence 446777889999999999999999999999997 47888 9999999999999885 46799999
Q ss_pred HhhccCCCC---cHHHHHHHHHHHHH--------hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHH-----------
Q psy11738 83 YNALPQHED---HYAIHKWLAVILNE--------KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTL----------- 140 (323)
Q Consensus 83 ~~al~~~p~---~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~----------- 140 (323)
+++++++|+ .+.+++.+|.++.. .|++. +|+..|+++++..|+++.+.
T Consensus 76 ~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~----------~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~ 145 (261)
T 3qky_A 76 ERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTR----------KAIEAFQLFIDRYPNHELVDDATQKIRELRA 145 (261)
T ss_dssp HHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHH----------HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHH----------HHHHHHHHHHHHCcCchhHHHHHHHHHHHHH
Confidence 999999885 46789999999998 78777 89999999999999998877
Q ss_pred ------HHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHc-------
Q psy11738 141 ------FMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRL------- 205 (323)
Q Consensus 141 ------~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~------- 205 (323)
+.+|.+++..|++ ++|+..|+++++..|++. +.+++.+|.+|..+
T Consensus 146 ~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~ 205 (261)
T 3qky_A 146 KLARKQYEAARLYERRELY--------------------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRA 205 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHHccCH--------------------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhh
Confidence 7778888887655 999999999999999841 46899999999988
Q ss_pred ---CCHHHHHHHHHHHhCCCCCC
Q psy11738 206 ---ENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 206 ---g~~~~A~~~~~~al~~~~~~ 225 (323)
|++++|+.+|++++...|++
T Consensus 206 ~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 206 RQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp GHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccchHHHHHHHHHHHHHHCCCC
Confidence 55555555555555555544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=156.70 Aligned_cols=192 Identities=12% Similarity=0.014 Sum_probs=162.4
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh-------hcccchHHHHHhHHHHHHHHHHHHc-cCCCChhHHHHHhhH
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEK-------ATLEGTKARIQQLETIKHHMNKAIE-LKPDDSTTLFMLGMW 146 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~~~~al~-l~p~~~~~~~~lg~~ 146 (323)
.++|+..|++++..+|.++++|+.+|.++... |+.. ...+...+|+..|++|++ ++|++..+|..+|.+
T Consensus 32 ~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~---~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN---NAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCH---HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchh---hcccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 36799999999999999999999999988754 5542 112233489999999999 799999999999999
Q ss_pred HHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 147 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ-NVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
+...|++ ++|+..|+++++++|++ +. +|..+|.++.+.|++++|+..|+++++.+|..
T Consensus 109 ~~~~~~~--------------------~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 109 EESRMKY--------------------EKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHTTCH--------------------HHHHHHHHHHHTSSSSC-THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred HHhcCCH--------------------HHHHHHHHHHHhccccC-ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 9887765 99999999999999997 55 89999999999999999999999999999876
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
..... ..+...+ ...|++++|+..|++++..+|++ +..+..+|.++...|++++|+.+|++++..
T Consensus 168 ~~~~~-----------~~a~~~~--~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 168 HHVYV-----------TAALMEY--YCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp THHHH-----------HHHHHHH--HTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHH-----------HHHHHHH--HHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 43211 1111111 11589999999999999999998 799999999999999999999999999995
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-21 Score=169.84 Aligned_cols=253 Identities=15% Similarity=0.119 Sum_probs=191.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS----E----YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~----~----~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
...++..|..++..|++++|+..++++ . .|..+.++..+|.+|...|+ +++|+.+++++
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~a 113 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN-------------FDEAIVCCQRH 113 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHH
Confidence 456778999999999999999988875 1 34457788899999988885 46688888888
Q ss_pred ccCCCCc------HHHHHHHHHHHHHhhcccc----------hHHHHHhHHHHHHHHHHHHcc------CCCChhHHHHH
Q psy11738 86 LPQHEDH------YAIHKWLAVILNEKATLEG----------TKARIQQLETIKHHMNKAIEL------KPDDSTTLFML 143 (323)
Q Consensus 86 l~~~p~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~al~l------~p~~~~~~~~l 143 (323)
+++.|.. +.++..+|.++...|+... ..+......+|..++.+++.+ .|....++..+
T Consensus 114 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 193 (406)
T 3sf4_A 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNL 193 (406)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 8887765 4488899999999998100 001122233888888888887 34445678899
Q ss_pred hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch-----hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 144 GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
|.++...|++ ++|+.+|++++++.|... ..++..+|.+|...|++++|+.+++++
T Consensus 194 a~~~~~~g~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 194 GNTHYLLGNF--------------------RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHHTBH--------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCH--------------------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999988765 999999999999855431 238999999999999999999999999
Q ss_pred hCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-----hhhhHHHHHHHHHhcCHHH
Q psy11738 219 KNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQ 293 (323)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-----~~~~~~lg~~y~~~g~~~~ 293 (323)
+.+.|....... .......++..+.. .|++++|+.+|.+++.+.+... ..++..+|.+|..+|++++
T Consensus 254 l~~~~~~~~~~~-----~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 254 LLLARQLKDRAV-----EAQSCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCcCchH-----HHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 988665432111 01112223333333 6899999999999998855431 3578899999999999999
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|+.+|++++++.+.
T Consensus 326 A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 326 AMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=169.67 Aligned_cols=235 Identities=12% Similarity=0.046 Sum_probs=171.9
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhC-C-------CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESS-E-------YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~-~-------~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..++..|..++..|++++|+..++++ . .+..+.++..+|.+|...|++ ++|+.++++++
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al 153 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF-------------DEAAICCERHL 153 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHH
Confidence 45778999999999999999998875 1 355678888999999988854 56788888887
Q ss_pred cC------CCCcHHHHHHHHHHHHHhhc----------ccchHHHHHhHHHHHHHHHHHHccC------CCChhHHHHHh
Q psy11738 87 PQ------HEDHYAIHKWLAVILNEKAT----------LEGTKARIQQLETIKHHMNKAIELK------PDDSTTLFMLG 144 (323)
Q Consensus 87 ~~------~p~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~a~~~~~~al~l~------p~~~~~~~~lg 144 (323)
++ .|..+.++..+|.++...|+ +. .......+|++++.+++++. |....++..+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~---~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 230 (411)
T 4a1s_A 154 TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD---DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLG 230 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH---HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhh---hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77 67778899999999999999 22 11222337888888887764 33455888999
Q ss_pred hHHHHhcCCcHHHHHHHHHh----------------h--c--CCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHH
Q psy11738 145 MWCFEITDMPWYQRKIANAI----------------F--D--TLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLG 199 (323)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~----------------~--~--~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg 199 (323)
.++...|++......+..++ . + -...|++++|+.+|++++++.|.. ...++..+|
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 310 (411)
T 4a1s_A 231 NTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLG 310 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999887743222111110 0 0 025689999999999999986653 136789999
Q ss_pred HHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 200 KTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 200 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
.+|...|++++|+.++++++.+.+....... .......++..+.. .|++++|+.+|.+++.+.+..
T Consensus 311 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 311 NTYTLLHEFNTAIEYHNRHLAIAQELGDRIG-----EARACWSLGNAHSA---IGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChHH-----HHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999997554332211 11222334444444 789999999999999999865
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=177.97 Aligned_cols=204 Identities=13% Similarity=-0.021 Sum_probs=169.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc--------cCCCCcHHHHHHHHHHHHHhhcccch
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL--------PQHEDHYAIHKWLAVILNEKATLEGT 112 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~~~~~~~~~~ 112 (323)
.+|+++.+.+..+ ... +++++|+..+++++ +.+|+++.++..+|.++...|++.
T Consensus 389 ~~p~~~~a~~~~a---~~~-------------~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~-- 450 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVL-------------SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVA-- 450 (681)
T ss_dssp CCTTSTTHHHHHH---TTT-------------CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHH--
T ss_pred CCCCCcchHHhhc---ccc-------------cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHH--
Confidence 4778877766555 222 25688999999999 999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh
Q psy11738 113 KARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS 192 (323)
Q Consensus 113 ~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 192 (323)
+|+..|+++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ +
T Consensus 451 --------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~--------------------~~A~~~~~~al~l~P~~-~ 501 (681)
T 2pzi_A 451 --------KATRKLDDLAERVGWRWRLVWYRAVAELLTGDY--------------------DSATKHFTEVLDTFPGE-L 501 (681)
T ss_dssp --------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHSTTC-S
T ss_pred --------HHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCCCC-h
Confidence 899999999999999999999999999998765 99999999999999998 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
.+++++|.+|..+|++++ +.+|+++++++|++..... .++.++.. .|++++|+..|.+++.++|+
T Consensus 502 ~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~-----------~lg~~~~~---~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 502 APKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF-----------GLARARSA---EGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH-----------HHHHHHHH---TTCHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH-----------HHHHHHHH---cCCHHHHHHHHHhhcccCcc
Confidence 999999999999999999 9999999999999875422 12222222 78999999999999999999
Q ss_pred chhhhhHHHHHHHHHhcC--------HHHHHHHHHHhhCCCCh
Q psy11738 273 FYSQNVLMLGKTYMRLEN--------YEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 273 ~~~~~~~~lg~~y~~~g~--------~~~A~~~~~~al~~~~~ 307 (323)
+ ..+++++|.++...|+ +.+|...+.+....+|.
T Consensus 567 ~-~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 567 F-TTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp H-HHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred c-HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 8 7999999999977554 66666666555433444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-18 Score=146.20 Aligned_cols=199 Identities=16% Similarity=0.182 Sum_probs=166.0
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH----hhcccchHHHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNE----KATLEGTKARIQ 117 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 117 (323)
+|+++.+++.+|.+|...++ +++|+.+++++++ |.++.+++.+|.++.. .+++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~-------------~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~------- 59 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKD-------------FTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLK------- 59 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHH-------
T ss_pred CCCChHHHHHHHHHHHhCCC-------------HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHH-------
Confidence 57899999999999998884 4679999999998 7889999999999999 88887
Q ss_pred hHHHHHHHHHHHHccCCCChhHHHHHhhHHHH----hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhH
Q psy11738 118 QLETIKHHMNKAIELKPDDSTTLFMLGMWCFE----ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ 193 (323)
Q Consensus 118 ~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 193 (323)
+|+.+|+++++++ ++.+++.+|.++.. .++ +++|+.+|+++++.+ + +.
T Consensus 60 ---~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~--------------------~~~A~~~~~~a~~~~--~-~~ 111 (273)
T 1ouv_A 60 ---KAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN--------------------TNKALQYYSKACDLK--Y-AE 111 (273)
T ss_dssp ---HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC--------------------HHHHHHHHHHHHHTT--C-HH
T ss_pred ---HHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC--------------------HHHHHHHHHHHHHcC--C-cc
Confidence 8999999999986 89999999999887 554 499999999999984 4 68
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHh
Q psy11738 194 NVLMLGKTYMR----LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEK 268 (323)
Q Consensus 194 ~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~ 268 (323)
+++.+|.+|.. .+++++|+.+|+++++.++. .. .. .++..+. +....+++++|+.+|+++++
T Consensus 112 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~a-~~----------~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 178 (273)
T 1ouv_A 112 GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDG--DG-CT----------ILGSLYDAGRGTPKDLKKALASYDKACD 178 (273)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH--HH-HH----------HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcH--HH-HH----------HHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999 99999999999999987521 11 11 1222222 11236899999999999998
Q ss_pred hCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCCC
Q psy11738 269 QHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 269 ~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~ 306 (323)
.++ +.+++.+|.+|.. .+++++|+.+|+++++..|
T Consensus 179 ~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 179 LKD---SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp TTC---HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCC---HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 854 5779999999999 9999999999999999876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-19 Score=141.49 Aligned_cols=173 Identities=14% Similarity=0.093 Sum_probs=159.0
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
......++..|..++..|++++|+..++++ ..|.++.++..+|.++...|+ +++|+.+++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA-------------VDRGTELLERSLAD 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhc
Confidence 344566788999999999999999999998 588999999999999998885 46799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|.++.++..+|.++...|++. +|.++++++++.+|+++.++..+|.++...|++
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------- 126 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYD----------LAVPLLIKVAEANPINFNVRFRLGVALDNLGRF--------------- 126 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred CCCCHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcH---------------
Confidence 9999999999999999999998 899999999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.+|+++++..|++ +.++..+|.++...|++++|+.++++++.++|.+..
T Consensus 127 -----~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 127 -----DEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp -----HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred -----HHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999997 699999999999999999999999999999887754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-21 Score=162.09 Aligned_cols=235 Identities=17% Similarity=0.196 Sum_probs=165.9
Q ss_pred hhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC--------CCCcHH
Q psy11738 26 EEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ--------HEDHYA 94 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~ 94 (323)
...-+++|+..+.+. ..|..+.++..+|.+|...|++ ++|+.++++++++ +|..+.
T Consensus 20 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY-------------KEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccH-------------HHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 334455566666554 2466788899999999998854 5577888777766 577888
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--------CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--------KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--------~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
++..+|.++...|++. +|.++|.+++.+ +|....++..+|.++...|++
T Consensus 87 ~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------- 143 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYK----------EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA------------- 143 (283)
T ss_dssp HHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH-------------
T ss_pred HHHHHHHHHHHhccHH----------HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH-------------
Confidence 9999999999999998 888899999988 577788899999999988765
Q ss_pred CCCCCCHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQ--------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPW 238 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 238 (323)
++|+.+|++++++ +|.. ..++..+|.+|..+|++++|+.++++++.+.|..............+
T Consensus 144 -------~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 215 (283)
T 3edt_B 144 -------EEVEYYYRRALEIYATRLGPDDPNV-AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215 (283)
T ss_dssp -------HHHHHHHHHHHHHHHHHSCTTCHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHH
T ss_pred -------HHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 9999999999998 6664 58899999999999999999999999998743321110000001111
Q ss_pred HHHHHHHHhhc-cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 239 YQRKIANAIFD-TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 239 ~~~~~a~~~~~-~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
..........+ ......+.++...+.......|.. ..++..+|.+|..+|++++|..+|++++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 216 MHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV-NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHTTCCCCC------------CCCCCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 11111111000 112344666777776666666766 6889999999999999999999999999864
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=162.21 Aligned_cols=253 Identities=15% Similarity=0.118 Sum_probs=187.0
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS----E----YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~----~----~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
...+...|..++..|++++|+..++++ . .+..+.++..+|.+|...|+ +++|+.+++++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~a 109 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN-------------FDEAIVCCQRH 109 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC-------------HHHHHHHHHHH
Confidence 455678899999999999999998875 1 33457788899999988885 46688888888
Q ss_pred ccCCCCcH------HHHHHHHHHHHHhhcccc----------hHHHHHhHHHHHHHHHHHHcc------CCCChhHHHHH
Q psy11738 86 LPQHEDHY------AIHKWLAVILNEKATLEG----------TKARIQQLETIKHHMNKAIEL------KPDDSTTLFML 143 (323)
Q Consensus 86 l~~~p~~~------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~al~l------~p~~~~~~~~l 143 (323)
+++.|... .++..+|.++...|+... .........+|.+++.+++.+ .|....++..+
T Consensus 110 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 189 (338)
T 3ro2_A 110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 87766543 388889999999998100 001122233788888888876 33445678899
Q ss_pred hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 144 GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
|.++...|++ ++|+.+|++++++.|.. ...++..+|.+|...|++++|+.+++++
T Consensus 190 ~~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 190 GNTHYLLGNF--------------------RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCH--------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCH--------------------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888765 99999999999885442 1237999999999999999999999999
Q ss_pred hCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-----hhhhHHHHHHHHHhcCHHH
Q psy11738 219 KNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQ 293 (323)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-----~~~~~~lg~~y~~~g~~~~ 293 (323)
+.+.|....... .......++..+.. .|++++|+.++.+++.+.|... ..++..+|.+|..+|++++
T Consensus 250 l~~~~~~~~~~~-----~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 250 LLLARQLKDRAV-----EAQSCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhhcchhH-----HHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 987655432111 01112223333333 6899999999999998865431 2478899999999999999
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|..+|++++++.+.
T Consensus 322 A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 322 AMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-19 Score=140.67 Aligned_cols=153 Identities=12% Similarity=0.153 Sum_probs=94.1
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++|+..++++++.+|.++.++..+|.++...|++. +|..+++++++++|+++.++..+|.++...|++
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 92 (186)
T 3as5_A 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVD----------RGTELLERSLADAPDNVKVATVLGLTYVQVQKY-- 92 (186)
T ss_dssp HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--
T ss_pred HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH--
Confidence 44566666666666665555555666555555555 555556666666666555555566555555433
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITD 235 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 235 (323)
++|+.+|+++++.+|++ +.++..+|.++...|++++|+.+++
T Consensus 93 ------------------~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~------------------- 134 (186)
T 3as5_A 93 ------------------DLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAIDSFK------------------- 134 (186)
T ss_dssp ------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHH-------------------
T ss_pred ------------------HHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHHHHHH-------------------
Confidence 55666666666655554 4555555555555555555555554
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
+++...|+. +.++..+|.+|...|++++|..++++++++.|++
T Consensus 135 -----------------------------~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 135 -----------------------------IALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp -----------------------------HHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred -----------------------------HHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444555655 5667788888888888888888888887776554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=172.87 Aligned_cols=169 Identities=11% Similarity=0.046 Sum_probs=152.8
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHH
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS----------EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFL 81 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~ 81 (323)
.++...+..+ +..|++++|+..++++ .+|+++++++.+|.+|...|+ +++|+..
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~-------------~~~A~~~ 455 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD-------------VAKATRK 455 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC-------------HHHHHHH
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC-------------HHHHHHH
Confidence 3333444444 7789999999988764 268999999999999999885 4679999
Q ss_pred HHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHH
Q psy11738 82 VYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161 (323)
Q Consensus 82 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 161 (323)
++++++++|+++.+++.+|.++...|+++ +|+..|+++++++|+++.+++.+|.++...|++
T Consensus 456 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~----------~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~-------- 517 (681)
T 2pzi_A 456 LDDLAERVGWRWRLVWYRAVAELLTGDYD----------SATKHFTEVLDTFPGELAPKLALAATAELAGNT-------- 517 (681)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC--------
T ss_pred HHHHhccCcchHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh--------
Confidence 99999999999999999999999999999 899999999999999999999999999999877
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++ +.+|+++++++|++ ..+++++|.+|..+|++++|+.+|+++++++|++...
T Consensus 518 ------------~~-~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 570 (681)
T 2pzi_A 518 ------------DE-HKFYQTVWSTNDGV-ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTA 570 (681)
T ss_dssp ------------CT-TCHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHH
T ss_pred ------------HH-HHHHHHHHHhCCch-HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHH
Confidence 88 99999999999998 6999999999999999999999999999999987654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-20 Score=144.50 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
++.+++|+..+++++..+|+++.+++.+|.+|...|+++ +|+++|+++++++|+++.+|+.+|.++...|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYD----------LAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 345566777777777777777777777777777777666 6666777777777777777777777776665
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHH-HHHHhCCCCCCchh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY-LEMTKNYPVKQDKD 228 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~-~~~al~~~~~~~~~ 228 (323)
++ ++|+.+|+++++++|++ +.+++.+|.+|...|++++|... ++++++++|++...
T Consensus 80 ~~--------------------~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 80 NT--------------------DKAVECYRRSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp CH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred ch--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 44 77777777777777776 56677777777777776655543 46777777766543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=141.43 Aligned_cols=147 Identities=17% Similarity=0.089 Sum_probs=122.5
Q ss_pred HHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHH
Q psy11738 98 WLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEAL 177 (323)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (323)
++|.++...|+++ +|+..+.+++..+|+++.+++.+|.+|+..|++ ++|+
T Consensus 2 ~LG~~~~~~~~~e----------~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~--------------------~~A~ 51 (150)
T 4ga2_A 2 PLGSMRRSKADVE----------RYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEY--------------------DLAK 51 (150)
T ss_dssp -----CCCHHHHH----------HHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCH--------------------HHHH
T ss_pred HhHHHHHHcChHH----------HHHHHHHHhcccCcccHHHHHHHHHHHHHcCCH--------------------HHHH
Confidence 4677777777777 899999999999999999999999999998765 9999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHH
Q psy11738 178 KYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYE 257 (323)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (323)
++|+++++++|++ +.+++.+|.+|..+|++++|+.+|+++++++|++..... .++..+.. .++++
T Consensus 52 ~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----------~la~~~~~---~~~~~ 116 (150)
T 4ga2_A 52 KYICTYINVQERD-PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL-----------KIAELLCK---NDVTD 116 (150)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHH---HCSSS
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHH---cCChH
Confidence 9999999999998 799999999999999999999999999999999876432 12222222 46777
Q ss_pred HHHHH-HHHHHhhCCcchhhhhHHHHHHHHHhcC
Q psy11738 258 EALKY-FLEAEKQHPLFYSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 258 ~Al~~-~~~a~~~~p~~~~~~~~~lg~~y~~~g~ 290 (323)
+|+.. ++++++++|++ +.++..++.++...|+
T Consensus 117 ~aa~~~~~~al~l~P~~-~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 117 GRAKYWVERAAKLFPGS-PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCc
Confidence 77765 58999999998 7889999999988875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=162.77 Aligned_cols=236 Identities=15% Similarity=0.168 Sum_probs=180.5
Q ss_pred HHHhhhHHHhhccHHHHHHHHHhC-C----CC---CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 17 FLKKSDDLFEEQQFEEVNKMLESS-E----YK---EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 17 ~~~~a~~~~~~~~~~~A~~~~~~~-~----~~---~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
.+..|..++..|++++|+..++++ . .+ ..+.++..+|.+|..+|++ ++|+.++++++++
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~-------------~~A~~~~~~al~~ 170 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT-------------HVSMYHILQALDI 170 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc-------------HHHHHHHHHHHHH
Confidence 466888899999999999999886 1 12 3467888999999988864 4567777777665
Q ss_pred CC-------CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC------ChhHHHHHhhHHHHhcCCcH
Q psy11738 89 HE-------DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD------DSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 89 ~p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~------~~~~~~~lg~~~~~~~~~~~ 155 (323)
.+ ..+.++..+|.++..+|++. +|.++|.+++++.+. ...++.++|.++...|++
T Consensus 171 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~-- 238 (378)
T 3q15_A 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYD----------KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD-- 238 (378)
T ss_dssp HHTSTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH--
Confidence 43 34557788999999999998 899999999987542 245788999999998765
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEK-----QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
++|+.+|+++++ .+|.. +.+++.+|.+|..+|++++|+.++++++.+.+.......
T Consensus 239 ------------------~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 239 ------------------QMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred ------------------HHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999 78886 789999999999999999999999999998765432211
Q ss_pred hhhcchhHHHHHHHHHhhccCCCCc---HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 231 FEITDMPWYQRKIANAIFDTLPTSS---YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 231 ~~~~~~~~~~~~~a~~~~~~~~~~~---~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
... . .+...++. ..++ +.+|+.++++. ...|.. ...+..+|.+|...|++++|..+|++++++...
T Consensus 300 ~~~------~-~~l~~ly~--~~~~~~~~~~al~~~~~~-~~~~~~-~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 300 KEL------F-LFLQAVYK--ETVDERKIHDLLSYFEKK-NLHAYI-EACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHH------H-HHHHHHHS--SSCCHHHHHHHHHHHHHT-TCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH------H-HHHHHHHh--CCCcHHHHHHHHHHHHhC-CChhHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 100 0 11111221 2445 88999988873 333444 567889999999999999999999999876433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.2e-19 Score=151.24 Aligned_cols=241 Identities=10% Similarity=0.050 Sum_probs=198.5
Q ss_pred hHHHHHHhhhHHHhhccH-HHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 13 VSEEFLKKSDDLFEEQQF-EEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~-~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
....++......+..|.+ ++|+.+..++ .+|++..++...+.+...++. . .+++++.++++++..+
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~--~---------~~~eeL~~~~~~L~~n 99 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPN--R---------NLYDELDWCEEIALDN 99 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT--S---------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc--c---------cHHHHHHHHHHHHHHC
Confidence 335566666666777777 5799999987 599999999999999988873 1 4677999999999999
Q ss_pred CCcHHHHHHHHHHH----HHh---hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 90 EDHYAIHKWLAVIL----NEK---ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 90 p~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
|++..++.+.+.++ ... +++. +++.+++++++.+|.+..+|+..+.+....+.+
T Consensus 100 Pk~y~aW~~R~~iL~~~~~~l~~~~~~~----------~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~--------- 160 (306)
T 3dra_A 100 EKNYQIWNYRQLIIGQIMELNNNDFDPY----------REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH--------- 160 (306)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTTCCCTH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT---------
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---------
Confidence 99999999999999 555 3444 788999999999999999999999998888765
Q ss_pred HhhcCCCCCCHH--HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCC------HHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 163 AIFDTLPTSSYE--EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN------YEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 163 ~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
+ +++.++.++++.+|.| ..+|.+.+.++...|+ ++++++++++++..+|.+.....
T Consensus 161 -----------~~~~EL~~~~~~i~~d~~N-~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~---- 224 (306)
T 3dra_A 161 -----------NDAKELSFVDKVIDTDLKN-NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWN---- 224 (306)
T ss_dssp -----------TCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHH----
T ss_pred -----------ChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHH----
Confidence 6 9999999999999999 4999999999999998 99999999999999999987643
Q ss_pred chhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhC---CcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC-CCChhH
Q psy11738 235 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH---PLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN-YPAVQE 309 (323)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~---p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-~~~~~~ 309 (323)
++.....-.+ ...++....+.+++.++ |.. +.++..+|.+|...|+.++|+++|+++.+ ++|-..
T Consensus 225 -----y~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~~~s-~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~ 293 (306)
T 3dra_A 225 -----YLLGIHERFD----RSITQLEEFSLQFVDLEKDQVTS-SFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRS 293 (306)
T ss_dssp -----HHHHHHHHTT----CCGGGGHHHHHTTEEGGGTEESC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred -----HHHHHHHhcC----CChHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHH
Confidence 2221111111 12445566777777776 766 68899999999999999999999999996 788754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-20 Score=142.35 Aligned_cols=128 Identities=18% Similarity=0.134 Sum_probs=107.3
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.+-..+.++++++|+++.+++.+|.+++..|++ ++|+..|+++++++|++ +.+|+++|.
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~--------------------~eA~~~~~~al~~~P~~-~~~~~~lg~ 78 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRI--------------------EEAEVFFRFLCIYDFYN-VDYIMGLAA 78 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence 334468889999999999999999999988755 99999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHH
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 280 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~ 280 (323)
+|..+|++++|+.+|++++++ +|++ +.++++
T Consensus 79 ~~~~~g~~~~Ai~~~~~al~l------------------------------------------------~P~~-~~~~~~ 109 (151)
T 3gyz_A 79 IYQIKEQFQQAADLYAVAFAL------------------------------------------------GKND-YTPVFH 109 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH------------------------------------------------SSSC-CHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhh------------------------------------------------CCCC-cHHHHH
Confidence 999888888777777666554 6666 678899
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 281 LGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 281 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
+|.+|..+|++++|+.+|++++++.|+++ +-++++.+|
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~---~~~~A~~ll 147 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK---LKIKAQSYL 147 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH---HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH---HHHHHHHHH
Confidence 99999999999999999999999998876 455555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-18 Score=141.59 Aligned_cols=185 Identities=9% Similarity=-0.022 Sum_probs=151.1
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
.+..++.+|..+...|++. +|+..|+++++..|+++ .+++.+|.+++..|++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~----------~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~--------------- 57 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWR----------QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL--------------- 57 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH---------------
T ss_pred CHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH---------------
Confidence 4677899999999999999 89999999999999875 6899999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHH------------------cCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYS--QNVLMLGKTYMR------------------LENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~--~~~~~lg~~y~~------------------~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|+..|+++++.+|++.. .+++.+|.++.. .|++++|+..|+++++..|++...
T Consensus 58 -----~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 58 -----PLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT 132 (225)
T ss_dssp -----HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH
T ss_pred -----HHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999731 379999999987 579999999999999999998754
Q ss_pred hhh--hh----cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch--hhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 229 QCF--EI----TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 229 ~~~--~~----~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
... .+ ..+......++..++. .|++++|+..|+++++..|+.. +.+++.+|.+|..+|++++|+.++++
T Consensus 133 ~~a~~~l~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 133 TDATKRLVFLKDRLAKYEYSVAEYYTE---RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 321 00 0011111223333443 6899999999999999999862 25799999999999999999999999
Q ss_pred hhCCCChhH
Q psy11738 301 TKNYPAVQE 309 (323)
Q Consensus 301 al~~~~~~~ 309 (323)
+....|.+.
T Consensus 210 l~~~~~~~~ 218 (225)
T 2yhc_A 210 IAANSSNTL 218 (225)
T ss_dssp HHHCCSCCC
T ss_pred HHhhCCCch
Confidence 998887754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=139.70 Aligned_cols=123 Identities=11% Similarity=-0.041 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
..+-.+-..++++++++|+++++++.+|.++...|++. +|+..|++++.++|+++.+|+.+|.++...|+
T Consensus 16 ~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~----------eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIE----------EAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc
Confidence 34444566788999999999999999999999999999 89999999999999999999999999999875
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
+ ++|+.+|+++++++|++ +.+++++|.+|..+|++++|+.+|+++++++|+..
T Consensus 86 ~--------------------~~Ai~~~~~al~l~P~~-~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 86 F--------------------QQAADLYAVAFALGKND-YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp H--------------------HHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred H--------------------HHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 5 99999999999999998 79999999999999999999999999999988753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-19 Score=134.39 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=106.4
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
++..++|+.++++..+|..+...|++. +|+++|+++++++|+++.+++.+|.++..+|++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---------- 63 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYP----------TAMRHYNEAVKRDPENAILYSNRAACLTKLMEF---------- 63 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH----------
Confidence 456799999999999999999999999 899999999999999999999999999998766
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|+..|+++++++|++ +.+++++|.+|..+|++++|+.+|+++++++|++...
T Consensus 64 ----------~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 64 ----------QRALDDCDTCIRLDSKF-IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp ----------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ----------HHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999998 6999999999999999999999999999999998754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-18 Score=141.69 Aligned_cols=183 Identities=10% Similarity=0.096 Sum_probs=148.0
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKED---VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~---~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
++..++..|..++..|+|++|+..++++ ..|.+ .++++.+|.+|...|+ +++|+..++++++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~-------------~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD-------------LPLAQAAIDRFIR 69 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHH
Confidence 4567899999999999999999999987 35654 5789999999999885 4679999999999
Q ss_pred CCCCcHH---HHHHHHHHHHHhhcc--------cchHHHHHhHHHHHHHHHHHHccCCCChhHH----------------
Q psy11738 88 QHEDHYA---IHKWLAVILNEKATL--------EGTKARIQQLETIKHHMNKAIELKPDDSTTL---------------- 140 (323)
Q Consensus 88 ~~p~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~---------------- 140 (323)
.+|+++. +++++|.++..++.. .......+...+|+..|+++++..|+++.++
T Consensus 70 ~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 70 LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 9999875 789999998875411 0001112445599999999999999998765
Q ss_pred -HHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 141 -FMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 141 -~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
+.+|.+++..| +|++|+..|+++++..|++. +.+++.+|.+|.++|++++|+.++++
T Consensus 150 ~~~~a~~~~~~~--------------------~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 150 EYSVAEYYTERG--------------------AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHT--------------------CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--------------------cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34455555554 55999999999999999862 26799999999999999999999999
Q ss_pred HhCCCCCCchh
Q psy11738 218 TKNYPVKQDKD 228 (323)
Q Consensus 218 al~~~~~~~~~ 228 (323)
+....|++.+.
T Consensus 210 l~~~~~~~~~~ 220 (225)
T 2yhc_A 210 IAANSSNTLEH 220 (225)
T ss_dssp HHHCCSCCCCC
T ss_pred HHhhCCCchhh
Confidence 99998887653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=138.91 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=140.5
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
..+..+..|..++..|++++|+..++++ .+|+++.+++.+|.+|...|+ +++|+..+++++..+|
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-------------~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQ-------------FELAQELLATIPLEYQ 71 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC-------------HHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC-------------HHHHHHHHHHhhhccC
Confidence 3456789999999999999999999998 599999999999999998885 4779999999999999
Q ss_pred CcHHHHHHHHHHHH-HhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 91 DHYAIHKWLAVILN-EKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 91 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
++..+...+.+.. ..+... .++..++++++++|+++.+++.+|.++...|++
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~----------~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~---------------- 124 (176)
T 2r5s_A 72 -DNSYKSLIAKLELHQQAAES----------PELKRLEQELAANPDNFELACELAVQYNQVGRD---------------- 124 (176)
T ss_dssp -CHHHHHHHHHHHHHHHHTSC----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH----------------
T ss_pred -ChHHHHHHHHHHHHhhcccc----------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH----------------
Confidence 8877665554432 222222 467899999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|+..|+++++++|++. ..++..+|.++..+|++++|+.+|++++.
T Consensus 125 ----~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 125 ----EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ----HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999841 35899999999999999999999999875
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=144.36 Aligned_cols=246 Identities=9% Similarity=-0.019 Sum_probs=196.5
Q ss_pred HHhhccHH-HHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q psy11738 24 LFEEQQFE-EVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLA 100 (323)
Q Consensus 24 ~~~~~~~~-~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 100 (323)
....|++. +|+.++..+ .+|++..+|...+.+...++.... ++.....+++++.+++.++..+|++..++.+.+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~---~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~ 115 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKS---PEESAALVKAELGFLESCLRVNPKSYGTWHHRC 115 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccccc---chhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567776 689999887 699999999999999988875432 344556689999999999999999999999999
Q ss_pred HHHHHhhc--ccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHH
Q psy11738 101 VILNEKAT--LEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALK 178 (323)
Q Consensus 101 ~~~~~~~~--~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 178 (323)
.++..++. +. +++.++.++++++|.|..+|...+.+....+.. +++++.
T Consensus 116 wlL~~l~~~~~~----------~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~-------------------~~eel~ 166 (331)
T 3dss_A 116 WLLSRLPEPNWA----------RELELCARFLEADERNFHCWDYRRFVAAQAAVA-------------------PAEELA 166 (331)
T ss_dssp HHHHHCSSCCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC-------------------HHHHHH
T ss_pred HHHhccCcccHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC-------------------HHHHHH
Confidence 99999885 44 788899999999999999999999988777642 389999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 179 YFLEAEKQHPLFYSQNVLMLGKTYMRL--------------ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 179 ~~~~al~~~p~~~~~~~~~lg~~y~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
++.++++.+|++ ..+|.+++.++..+ +.++++++++.+++.++|++.....+ .+.+.
T Consensus 167 ~~~~~I~~~p~N-~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y--------~r~ll 237 (331)
T 3dss_A 167 FTDSLITRNFSN-YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFY--------HRWLL 237 (331)
T ss_dssp HHHHHHHHCSCC-HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHH--------HHHHH
T ss_pred HHHHHHHHCCCC-HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHH--------HHHHH
Confidence 999999999999 59999999999888 56899999999999999999876431 11111
Q ss_pred HHhhccC-----CCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHH---HhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 245 NAIFDTL-----PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM---RLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 245 ~~~~~~~-----~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~---~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
....+.. ..+.++++++.+.+++++.|++ ..++..++.+.. ..|..++...++.+.+++||-....
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 1110000 0146899999999999999997 554444433322 3678889999999999999986654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=138.36 Aligned_cols=168 Identities=11% Similarity=-0.050 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHH
Q psy11738 43 KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETI 122 (323)
Q Consensus 43 ~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (323)
|...+.++.+|.++...|+ +++|+..++++++++|+++.++..+|.++...|++. +|
T Consensus 3 ~~~~~~~~~~a~~~~~~g~-------------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~----------~A 59 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGE-------------HAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFE----------LA 59 (176)
T ss_dssp ---CTTHHHHHHHHHHTTC-------------HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHH----------HH
T ss_pred CCHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHH----------HH
Confidence 4445567788888888775 467999999999999999999999999999999998 89
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHH-hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFE-ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
+..|++++..+| ++..+..++.+... .+.. .+|+..|+++++++|++ +.+++.+|.+
T Consensus 60 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~--------------------~~a~~~~~~al~~~P~~-~~~~~~la~~ 117 (176)
T 2r5s_A 60 QELLATIPLEYQ-DNSYKSLIAKLELHQQAAE--------------------SPELKRLEQELAANPDN-FELACELAVQ 117 (176)
T ss_dssp HHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTS--------------------CHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred HHHHHHhhhccC-ChHHHHHHHHHHHHhhccc--------------------chHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 999999999999 88776666654332 1111 46899999999999998 6999999999
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHH
Q psy11738 202 YMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 281 (323)
Q Consensus 202 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~l 281 (323)
+...|++++|+.+|+++++.+|... . +.++..+
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~----------------------------------------------~-~~a~~~l 150 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQ----------------------------------------------D-GEVKKTF 150 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTT----------------------------------------------T-THHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccC----------------------------------------------h-HHHHHHH
Confidence 9999999999999999888766431 1 3457788
Q ss_pred HHHHHHhcCHHHHHHHHHHhh
Q psy11738 282 GKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 282 g~~y~~~g~~~~A~~~~~~al 302 (323)
|.++..+|+.++|+.+|++++
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHH
Confidence 888888899988888888876
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=149.01 Aligned_cols=223 Identities=10% Similarity=-0.042 Sum_probs=163.5
Q ss_pred hhhHHHHHHh-hhHHHhhccHHHHHHHHHhC-C------CC-CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHH
Q psy11738 11 SKVSEEFLKK-SDDLFEEQQFEEVNKMLESS-E------YK-EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFL 81 (323)
Q Consensus 11 ~~~~~~~~~~-a~~~~~~~~~~~A~~~~~~~-~------~~-~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~ 81 (323)
.+.+...+.+ +..+...|++++|+..+.++ . ++ ..+.++..+|.+|..+|+ +++|+.+
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-------------~~~A~~~ 99 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-------------SVNAVDS 99 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC-------------HHHHHHH
Confidence 3344444554 45566689999999999876 1 11 225678888888888875 4679999
Q ss_pred HHhhccCCCCc------HHHHHHHHHHHHHh-hcccchHHHHHhHHHHHHHHHHHHccCCCC------hhHHHHHhhHHH
Q psy11738 82 VYNALPQHEDH------YAIHKWLAVILNEK-ATLEGTKARIQQLETIKHHMNKAIELKPDD------STTLFMLGMWCF 148 (323)
Q Consensus 82 ~~~al~~~p~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~al~l~p~~------~~~~~~lg~~~~ 148 (323)
+++|+++.|.. +.++..+|.+|... |+++ +|+.+|++|+++.|.+ ..++..+|.++.
T Consensus 100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~----------~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA----------KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH----------HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 99999988764 45788899999985 9988 8999999999998865 456888999998
Q ss_pred HhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh------HHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 149 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS------QNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
..|++ ++|+.+|++++++.|++.. .+++++|.|+..+|++++|+.+|++++.++
T Consensus 170 ~~g~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 170 LDGQY--------------------IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp HTTCH--------------------HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HhCCH--------------------HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88755 9999999999999988621 157899999999999999999999999999
Q ss_pred CCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHH
Q psy11738 223 VKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 284 (323)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~ 284 (323)
|........ .....++.. +...+.+++++|+..|.+++.++|.. ...+..+-..
T Consensus 230 p~~~~~~~~------~~l~~l~~~-~~~~~~~~~~~A~~~~~~~~~l~~~~-~~~~~~~k~~ 283 (292)
T 1qqe_A 230 PNFADSRES------NFLKSLIDA-VNEGDSEQLSEHCKEFDNFMRLDKWK-ITILNKIKES 283 (292)
T ss_dssp --------H------HHHHHHHHH-HHTTCTTTHHHHHHHHTTSSCCCHHH-HHHHHHHHHH
T ss_pred CCCCCcHHH------HHHHHHHHH-HHcCCHHHHHHHHHHhccCCccHHHH-HHHHHHHHHH
Confidence 987543211 011112222 22335688999999999999999976 4555444443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=152.26 Aligned_cols=257 Identities=14% Similarity=0.147 Sum_probs=176.2
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-----CCCCCHHHH--HHH--HHHHHHhcccCCCCcHH-HHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-----EYKEDVEII--WRL--VRVKYNLATHSSSLSDA-DKKQLILS 77 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~--~~l--a~~y~~~~~~~~~~~~~-~~~~~~~~ 77 (323)
..+++.+...+...-..+..+++++|..+++.+ .-..+.+.+ +.+ .+....++........+ +....+.
T Consensus 6 ~~~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~- 84 (383)
T 3ulq_A 6 VISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS- 84 (383)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHH-
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchh-
Confidence 345667788888999999999999999998886 122455444 222 12222222221110000 0000000
Q ss_pred HHHHHHhhccCCCCcHH------HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc---CCC---ChhHHHHHhh
Q psy11738 78 AYFLVYNALPQHEDHYA------IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL---KPD---DSTTLFMLGM 145 (323)
Q Consensus 78 A~~~~~~al~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l---~p~---~~~~~~~lg~ 145 (323)
..+++ ++..|...+ .++..|.++...|++. +|+.+|++++++ .|+ .+.+++.+|.
T Consensus 85 --~~~~~-i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 151 (383)
T 3ulq_A 85 --DLLLE-IDKKQARLTGLLEYYFNFFRGMYELDQREYL----------SAIKFFKKAESKLIFVKDRIEKAEFFFKMSE 151 (383)
T ss_dssp --HHHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHH
T ss_pred --hHHHH-HHhcCCCchhHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33333 222333333 3344899999999998 899999999998 233 5578999999
Q ss_pred HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 146 WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
+++..|++ ++|+.+|++++++.+.. ...++.++|.+|..+|++++|+.+|++++
T Consensus 152 ~~~~~~~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 152 SYYYMKQT--------------------YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHTTCH--------------------HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCH--------------------HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99998765 99999999999984332 13579999999999999999999999999
Q ss_pred CCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh-----hC-CcchhhhhHHHHHHHHHhcCHHH
Q psy11738 220 NYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK-----QH-PLFYSQNVLMLGKTYMRLENYEQ 293 (323)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~-----~~-p~~~~~~~~~lg~~y~~~g~~~~ 293 (323)
.+.|....... .+.....++..+.. .|++++|+.+|.+++. .+ |.. +.++..+|.+|..+|++++
T Consensus 212 ~~~~~~~~~~~-----~~~~~~~lg~~y~~---~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 282 (383)
T 3ulq_A 212 SMAEAEKQPQL-----MGRTLYNIGLCKNS---QSQYEDAIPYFKRAIAVFEESNILPSL-PQAYFLITQIHYKLGKIDK 282 (383)
T ss_dssp HHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCChHH-----HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHCCCHHH
Confidence 88665432211 01111223333333 6899999999999999 46 666 7889999999999999999
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|..++++++++.+.
T Consensus 283 A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 283 AHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=129.53 Aligned_cols=118 Identities=8% Similarity=-0.022 Sum_probs=109.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 41 EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 41 ~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
.+|+.++.+..+|.+|+..|+ +++|+.+|+++++++|.++.++..+|.++..+|++.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~---------- 64 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGD-------------YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQ---------- 64 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------
T ss_pred HCHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHH----------
Confidence 478889999999999998885 577999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
+|+..|+++++++|+++.+++.+|.++..+|++ ++|+.+|+++++++|++ ..++..|+.
T Consensus 65 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~--------------------~~A~~~~~~al~l~P~~-~~a~~~l~~ 123 (126)
T 4gco_A 65 RALDDCDTCIRLDSKFIKGYIRKAACLVAMREW--------------------SKAQRAYEDALQVDPSN-EEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHHCcCC-HHHHHHHHH
Confidence 899999999999999999999999999998765 99999999999999998 699999987
Q ss_pred HH
Q psy11738 201 TY 202 (323)
Q Consensus 201 ~y 202 (323)
|+
T Consensus 124 ~l 125 (126)
T 4gco_A 124 CL 125 (126)
T ss_dssp HC
T ss_pred hc
Confidence 74
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-17 Score=140.28 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=150.9
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ 88 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 88 (323)
|...+..+..|..++..|++++|+..++++ .+|+++++++.+|.+|...|+ +++|+..+++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~-------------~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR-------------SEDAEAVLXTIPLQ 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC-------------HHHHHHHHTTSCGG
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC-------------HHHHHHHHHhCchh
Confidence 566677899999999999999999999997 599999999999999999885 47799999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|+....+...+..+...++.. +|+..+.++++++|+++.+++.+|.++...|++
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~----------~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~--------------- 235 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADT----------PEIQQLQQQVAENPEDAALATQLALQLHQVGRN--------------- 235 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSC----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred hcchHHHHHHHHHHHHhhcccC----------ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH---------------
Confidence 9987777777777788888887 788899999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|+..|.++++.+|++. ..++..+|.++..+|+.++|+..|++++.
T Consensus 236 -----~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 236 -----EEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp -----HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999851 47899999999999999999999999875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=155.18 Aligned_cols=167 Identities=13% Similarity=0.012 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
+++++|+..++++++++|+++.++..+|.++...|++. +|.+.|+++++++|+++.++..+|.++...|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT----------AGEMAVQRGLALHPGHPEAVARLGRVRWTQQR 72 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 46788999999999999999999999999999999998 89999999999999999999999999999876
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhh
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFE 232 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 232 (323)
+ ++|+.+|+++++++|++ ..+++++|.+|...|++++|+.+|+++++++|.+.....
T Consensus 73 ~--------------------~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-- 129 (568)
T 2vsy_A 73 H--------------------AEAAVLLQQASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA-- 129 (568)
T ss_dssp H--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--
T ss_pred H--------------------HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--
Confidence 5 99999999999999998 699999999999999999999999999999998754322
Q ss_pred hcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHH
Q psy11738 233 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 282 (323)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg 282 (323)
.++..+....+-+++++|+..|++++..+|+. ...+..++
T Consensus 130 ---------~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~ 169 (568)
T 2vsy_A 130 ---------QLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA-VEPFAFLS 169 (568)
T ss_dssp ---------HHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC-SCHHHHTT
T ss_pred ---------HHHHHHHHhhccccHHHHHHHHHHHHhcCCcc-cChHHHhC
Confidence 12222222111288999999999999999987 67777776
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=141.26 Aligned_cols=169 Identities=11% Similarity=0.012 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|.+++.+..+|..+...|++. +|...|+++++++|+++.+++.+|.++...|++
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~---------------- 167 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYT----------DALPLLXDAWQLSNQNGEIGLLLAETLIALNRS---------------- 167 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH----------------
T ss_pred CCchhhHHHHHHHHHhCCCHH----------HHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCH----------------
Confidence 555556666666666666655 555566666666666666666666666655443
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
++|+..|++++..+|+. .......+..+...++.++|+..|++++..+|++..... .++..+..
T Consensus 168 ----~~A~~~l~~~~~~~p~~-~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~-----------~la~~l~~ 231 (287)
T 3qou_A 168 ----EDAEAVLXTIPLQDQDT-RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALAT-----------QLALQLHQ 231 (287)
T ss_dssp ----HHHHHHHTTSCGGGCSH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHH
T ss_pred ----HHHHHHHHhCchhhcch-HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHH-----------HHHHHHHH
Confidence 66666666666666643 344555555555666666666666666666665544321 11111111
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcch-hhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.|++++|+..|.+++..+|++. ..++..+|.+|..+|+.++|...|++++.
T Consensus 232 ---~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 232 ---VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 4566666666666666666541 35788999999999999999999998863
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-15 Score=140.80 Aligned_cols=248 Identities=16% Similarity=0.095 Sum_probs=151.6
Q ss_pred hhhhHHHHHHhhhHHHh----hccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 10 VSKVSEEFLKKSDDLFE----EQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
.+.++...+..|..++. .+++++|+..++++...+++++++.+|.+|..-..... ++++|+.+++++
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~---------~~~~A~~~~~~a 105 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQ---------DYAQAVIWYKKA 105 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---------CHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCC---------CHHHHHHHHHHH
Confidence 34566777888888888 89999999999988445889999999999987211111 457799999999
Q ss_pred ccCCCCcHHHHHHHHHHHHH----hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHH
Q psy11738 86 LPQHEDHYAIHKWLAVILNE----KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIA 161 (323)
Q Consensus 86 l~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~ 161 (323)
.+. .++.+++.+|.+|.. .+++. +|+.+|+++.+. +++.+++.||.+|......
T Consensus 106 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~----------~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~-------- 163 (490)
T 2xm6_A 106 ALK--GLPQAQQNLGVMYHEGNGVKVDKA----------ESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGV-------- 163 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHH----------HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS--------
T ss_pred HHC--CCHHHHHHHHHHHHcCCCCCCCHH----------HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCC--------
Confidence 875 578888999998877 55555 788888888764 5788899999887652100
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCCCCCCchhhhhhhcch-
Q psy11738 162 NAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPVKQDKDQCFEITDM- 236 (323)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~- 236 (323)
.+++++|+.+|+++++. ++ +.+++.||.+|.. .+++++|+.+|+++....+ ... ...++.+
T Consensus 164 --------~~d~~~A~~~~~~a~~~--~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a-~~~lg~~y 229 (490)
T 2xm6_A 164 --------TRDYVMAREWYSKAAEQ--GN-VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD--ELG-QLHLADMY 229 (490)
T ss_dssp --------CCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHH-HHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHC--CC-HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC--HHH-HHHHHHHH
Confidence 12335555555555443 22 3445555555554 4555555555555544321 100 0000000
Q ss_pred -------------------------hHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh--
Q psy11738 237 -------------------------PWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-- 288 (323)
Q Consensus 237 -------------------------~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~-- 288 (323)
......++..+. +....+++++|+.+|+++.+.. + +.+++.||.+|...
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~-~~a~~~Lg~~y~~~~~ 306 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--N-SDGQYYLAHLYDKGAE 306 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--C-HHHHHHHHHHHHHCBT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--C-HHHHHHHHHHHHcCCC
Confidence 001112222222 1222456677777777766543 3 45566777777666
Q ss_pred ---cCHHHHHHHHHHhhCCC
Q psy11738 289 ---ENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 289 ---g~~~~A~~~~~~al~~~ 305 (323)
+++++|+.+|+++++..
T Consensus 307 g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 307 GVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp TBCCCHHHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHhcC
Confidence 67777777777776663
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-16 Score=135.77 Aligned_cols=204 Identities=7% Similarity=-0.059 Sum_probs=167.3
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++|+.++.+++.++|++..++...+.++..++...+.........+++.+++.++..+|.++.+|+..+.+....+..
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~-- 124 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP-- 124 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC--
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc--
Confidence 569999999999999999999999999988876432222333455888999999999999999999999998877631
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCC-HHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN-YEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
.+++++.++.++++++|.| ..+|.+.+.++...|. ++++++++.+++..+|.+..+..
T Consensus 125 ----------------~~~~EL~~~~k~l~~dprN-y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~---- 183 (331)
T 3dss_A 125 ----------------NWARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH---- 183 (331)
T ss_dssp ----------------CHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH----
T ss_pred ----------------cHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH----
Confidence 3599999999999999999 4999999999999999 69999999999999999987643
Q ss_pred chhHHHHHHHHHhh-c--------cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh-----------cCHHHH
Q psy11738 235 DMPWYQRKIANAIF-D--------TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-----------ENYEQA 294 (323)
Q Consensus 235 ~~~~~~~~~a~~~~-~--------~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~-----------g~~~~A 294 (323)
.+.....-+ . ..+.+.++++++++.+++.++|++ ..+|+++..++... +.++++
T Consensus 184 -----~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d-~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~e 257 (331)
T 3dss_A 184 -----YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWLLGAGSGRCELSVEKSTVLQSE 257 (331)
T ss_dssp -----HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHH
T ss_pred -----HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 222111111 0 111256899999999999999999 78898777666655 568999
Q ss_pred HHHHHHhhCCCChh
Q psy11738 295 AYYLEMTKNYPAVQ 308 (323)
Q Consensus 295 ~~~~~~al~~~~~~ 308 (323)
++++.+++++.|++
T Consensus 258 l~~~~elle~~pd~ 271 (331)
T 3dss_A 258 LESCKELQELEPEN 271 (331)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhhCccc
Confidence 99999999999984
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=127.78 Aligned_cols=118 Identities=10% Similarity=-0.036 Sum_probs=111.1
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHH
Q psy11738 79 YFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQR 158 (323)
Q Consensus 79 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~ 158 (323)
-..+++++.++|+++.+++.+|.++...|++. +|+..|.+++.++|+++.+|+.+|.++...|++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----- 71 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYE----------DAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY----- 71 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChH----------HHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH-----
Confidence 34688999999999999999999999999999 899999999999999999999999999998765
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.+|+++++++|++ +.+++++|.+|..+|++++|+.+|+++++++|.++.
T Consensus 72 ---------------~~A~~~~~~al~l~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 72 ---------------DLAIHSYSYGAVMDIXE-PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp ---------------HHHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred ---------------HHHHHHHHHHHhcCCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 99999999999999998 699999999999999999999999999999988754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.4e-17 Score=152.43 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=133.0
Q ss_pred hccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy11738 27 EQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILN 104 (323)
Q Consensus 27 ~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 104 (323)
.|++++|+..++++ .+|+++.++..+|.+|...|+ +++|+.+++++++++|+++.++..+|.++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGD-------------TTAGEMAVQRGLALHPGHPEAVARLGRVRW 68 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHTTSTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 47899999999987 599999999999999998885 567999999999999999999999999999
Q ss_pred HhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy11738 105 EKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAE 184 (323)
Q Consensus 105 ~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 184 (323)
..|+++ +|.++|+++++++|+++.+++.+|.++...|++ ++|+.+|++++
T Consensus 69 ~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al 118 (568)
T 2vsy_A 69 TQQRHA----------EAAVLLQQASDAAPEHPGIALWLGHALEDAGQA--------------------EAAAAAYTRAH 118 (568)
T ss_dssp HTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHH
T ss_pred HCCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHH
Confidence 999998 899999999999999999999999999998765 99999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHc---CCHHHHHHHHHHHhCCCCCCchh
Q psy11738 185 KQHPLFYSQNVLMLGKTYMRL---ENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 185 ~~~p~~~~~~~~~lg~~y~~~---g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
+++|++ ..++..+|.++..+ |++++|+..|+++++.+|.+...
T Consensus 119 ~~~p~~-~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 119 QLLPEE-PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp HHCTTC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred HhCCCC-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence 999998 69999999999999 99999999999999999987543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-15 Score=140.02 Aligned_cols=253 Identities=15% Similarity=0.140 Sum_probs=153.0
Q ss_pred hhHHHHHHhhhHHHh----hccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 12 KVSEEFLKKSDDLFE----EQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
..+...+..|..+.. .+++++|+..++++...+++.+++.+|.+|..-..... ++++|+.+++++++
T Consensus 145 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~---------~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 145 GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVER---------NDAISAQWYRKSAT 215 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCc---------CHHHHHHHHHHHHH
Confidence 345556666666666 67777777777776444567777777777765211111 23445555555544
Q ss_pred CCCCcHHHHHHHHHHHHH----hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH----hcCCc----H
Q psy11738 88 QHEDHYAIHKWLAVILNE----KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE----ITDMP----W 155 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~----~~~~~----~ 155 (323)
. .++.+++.+|.++.. .+++. +|+.+|+++++. .++.+++.+|.++.. .++.. |
T Consensus 216 ~--~~~~a~~~lg~~y~~g~g~~~~~~----------~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 216 S--GDELGQLHLADMYYFGIGVTQDYT----------QSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp T--TCHHHHHHHHHHHHHTSSSCCCHH----------HHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHcCCCCCCCHH----------HHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 3 234455555555544 33333 444444444432 334444444444443 33221 1
Q ss_pred HHHH-----------HHHHhhc--CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC---CHHHHHHHHHHHh
Q psy11738 156 YQRK-----------IANAIFD--TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE---NYEQAAYYLEMTK 219 (323)
Q Consensus 156 ~~~~-----------~~~~~~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al 219 (323)
+.+. ++..... ....+++++|+.+|+++++.. + +.+++.||.+|...| ++++|+.+|++++
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~-~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--D-ATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--C-HHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 1100 0000000 001256799999999998863 3 478899999998866 8889999999998
Q ss_pred CCCCCCchhhhhhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHH
Q psy11738 220 NYPVKQDKDQCFEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQA 294 (323)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A 294 (323)
... +... .+. ++..++ +....+++++|+.+|+++.+.. + +.+++.||.+|.. .+++++|
T Consensus 359 ~~~--~~~a-~~~----------Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~-~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 359 AKG--EKAA-QFN----------LGNALLQGKGVKKDEQQAAIWMRKAAEQG--L-SAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HTT--CHHH-HHH----------HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HCC--CHHH-HHH----------HHHHHHcCCCCCCCHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCCCCCHHHH
Confidence 762 2211 111 222222 2223578999999999999865 3 6789999999998 8999999
Q ss_pred HHHHHHhhCCCC
Q psy11738 295 AYYLEMTKNYPA 306 (323)
Q Consensus 295 ~~~~~~al~~~~ 306 (323)
+.+|++|++..|
T Consensus 423 ~~~~~~A~~~~~ 434 (490)
T 2xm6_A 423 WAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCC
Confidence 999999999974
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-15 Score=138.55 Aligned_cols=235 Identities=11% Similarity=0.083 Sum_probs=173.1
Q ss_pred HHHHHHhhhHHHhhccHHHHH----HHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCC
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVN----KMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQH 89 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~----~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 89 (323)
+...+..|..+...+.+++++ .+++.+ ...++.+++.+|.+|...|. ..++++|+.+++++.+..
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a-~~~~~~a~~~Lg~~~~~~g~----------~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAA-LNTTDICYVELATVYQKKQQ----------PEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH-TTTCTTHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC----------cccHHHHHHHHHHHHHCC
Confidence 344455566666666444443 334433 23344488899999988653 236788999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|..+..++.+|.+|....-.. .+..+|+.+|+++. |+++.+++.||.+++....
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~------~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~----------------- 263 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGT------PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE----------------- 263 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSS------CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG-----------------
T ss_pred CHHHHHHHHHHHHHhCCCCCC------CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC-----------------
Confidence 999998899999996542111 12238999999998 9999999999998553211
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC-----CHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHH
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE-----NYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIA 244 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a 244 (323)
.+++++|+.+|+++.+.. + +.++++||.+|. .| ++++|+.+|+++. |.+..... .+ +
T Consensus 264 ~~d~~~A~~~~~~Aa~~g--~-~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~-~L----------g 325 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAAD--Q-PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADY-YL----------G 325 (452)
T ss_dssp GCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHH-HH----------H
T ss_pred CCCHHHHHHHHHHHHHCC--C-HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHH-HH----------H
Confidence 156799999999999754 5 689999999998 66 9999999999998 55544322 22 2
Q ss_pred HHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCCC
Q psy11738 245 NAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 245 ~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~ 306 (323)
..+. +.....++++|+.+|+++.+. ++ +.+++.||.+|.. ..++.+|..+|++|.+..+
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~-~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARN--GQ-NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTT--TC-TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhh--Ch-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 1122 222346899999999999874 44 6789999999985 5699999999999999854
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-17 Score=137.48 Aligned_cols=216 Identities=7% Similarity=-0.032 Sum_probs=173.1
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHH-------HHHHHHhcccCCCCcHHHHHHHHHHH
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRL-------VRVKYNLATHSSSLSDADKKQLILSA 78 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l-------a~~y~~~~~~~~~~~~~~~~~~~~~A 78 (323)
++..+++.+.|..|.-+ ..+++..|...+.++ .+|..+++|..+ +.++..++.. .++
T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~-------------~~a 66 (282)
T 4f3v_A 1 GHMTDRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYS-------------RRN 66 (282)
T ss_dssp CHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHT-------------GGG
T ss_pred CCchHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHH-------------HHH
Confidence 35678899999999987 689999999999998 599999999988 6777766644 458
Q ss_pred HHHHHhhccCCCCcHHHHHH---------------------HHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh
Q psy11738 79 YFLVYNALPQHEDHYAIHKW---------------------LAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS 137 (323)
Q Consensus 79 ~~~~~~al~~~p~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~ 137 (323)
+..+.+++.+.|....+++. ++.++...|++. +|.+.|..++...|++.
T Consensus 67 ~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~----------eA~~~l~~~~~~~p~~~ 136 (282)
T 4f3v_A 67 FGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYA----------DAMEALEAAPVAGSEHL 136 (282)
T ss_dssp TTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHH----------HHHHHHTSSCCTTCHHH
T ss_pred HHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhcCCchH
Confidence 99999999999987777666 667788888888 88888998888889888
Q ss_pred hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11738 138 TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-FYSQNVLMLGKTYMRLENYEQAAYYLE 216 (323)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~y~~~g~~~~A~~~~~ 216 (323)
+.+.+|.+++..+++ ++|+.+|+++.+..+. ....+++++|.++..+|++++|+.+|+
T Consensus 137 -~~~~~a~l~~~~~r~--------------------~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~ 195 (282)
T 4f3v_A 137 -VAWMKAVVYGAAERW--------------------TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLT 195 (282)
T ss_dssp -HHHHHHHHHHHTTCH--------------------HHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCH--------------------HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 889999888887655 9999999888775322 112478899999999999999999888
Q ss_pred HHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHH
Q psy11738 217 MTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAY 296 (323)
Q Consensus 217 ~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~ 296 (323)
+++... . +|.....+++.+|.++..+|+.++|..
T Consensus 196 ~a~~g~-~---------------------------------------------~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 196 EANDSP-A---------------------------------------------GEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp HHHTST-T---------------------------------------------TTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCC-C---------------------------------------------CccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 886421 0 143225678899999999999999999
Q ss_pred HHHHhhCCCChhHHHHHH
Q psy11738 297 YLEMTKNYPAVQEATKLL 314 (323)
Q Consensus 297 ~~~~al~~~~~~~~~~~l 314 (323)
.|++++..+|..++...|
T Consensus 230 ~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 230 LLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHH
Confidence 999999998884444444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-17 Score=124.89 Aligned_cols=127 Identities=16% Similarity=0.093 Sum_probs=93.3
Q ss_pred HHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11738 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204 (323)
Q Consensus 125 ~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~ 204 (323)
.|.+++.++|++..+++.+|.+++..|++ ++|+..|+++++++|++ +.+++.+|.+|..
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~ 67 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXY--------------------EDAHXVFQALCVLDHYD-SRFFLGLGACRQA 67 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHHcCccc-HHHHHHHHHHHHH
Confidence 47788888888888888888888887654 88888888888888887 6888888888888
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHH
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 284 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~ 284 (323)
.|++++|+.+|++++.+ +|++ +.+++.+|.+
T Consensus 68 ~g~~~~A~~~~~~al~l------------------------------------------------~p~~-~~~~~~lg~~ 98 (148)
T 2vgx_A 68 MGQYDLAIHSYSYGAVM------------------------------------------------DIXE-PRFPFHAAEC 98 (148)
T ss_dssp TTCHHHHHHHHHHHHHH------------------------------------------------STTC-THHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhc------------------------------------------------CCCC-chHHHHHHHH
Confidence 88777777766666554 5555 5667777777
Q ss_pred HHHhcCHHHHHHHHHHhhCCCCh-hHHHHHHHHHHhhh
Q psy11738 285 YMRLENYEQAAYYLEMTKNYPAV-QEATKLLEKAKSYL 321 (323)
Q Consensus 285 y~~~g~~~~A~~~~~~al~~~~~-~~~~~~l~~~~~~~ 321 (323)
|..+|++++|+.+|++++++.|. .+......++..++
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 136 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHH
Confidence 77777777777777777777554 33344555555444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=124.98 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=101.0
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL 215 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 215 (323)
.+.++..+|..++..|++ ++|+.+|+++++++|++ +.++.++|.+|..+|++++|+..|
T Consensus 7 ~A~a~~~lG~~~~~~~~~--------------------~~A~~~y~~Al~~~p~~-~~~~~nlg~~~~~~~~~~~A~~~~ 65 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDF--------------------EKAHVHYDKAIELDPSN-ITFYNNKAAVYFEEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCCCC-HHHHHhHHHHHHHhhhHHHHHHHH
Confidence 455678899999998755 99999999999999998 699999999999999999999999
Q ss_pred HHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHH
Q psy11738 216 EMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 295 (323)
Q Consensus 216 ~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~ 295 (323)
+++++++|.+.... +.. +.+++.+|.+|..+|++++|+
T Consensus 66 ~~al~~~~~~~~~~-----------------------------------------~~~-a~~~~~lg~~~~~~~~~~~A~ 103 (127)
T 4gcn_A 66 EKAVEVGRETRADY-----------------------------------------KLI-AKAMSRAGNAFQKQNDLSLAV 103 (127)
T ss_dssp HHHHHHHHHTTCCH-----------------------------------------HHH-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCcccchhh-----------------------------------------HHH-HHHHHHHHHHHHHcCCHHHHH
Confidence 99998876543210 011 467889999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHH
Q psy11738 296 YYLEMTKNYPAVQEATKLLEKAK 318 (323)
Q Consensus 296 ~~~~~al~~~~~~~~~~~l~~~~ 318 (323)
.+|+++++.+|+.+....|.+++
T Consensus 104 ~~~~kal~~~~~~~~~~~l~~le 126 (127)
T 4gcn_A 104 QWFHRSLSEFRDPELVKKVKELE 126 (127)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCHHHHHHHHHhC
Confidence 99999999999887766666654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=125.46 Aligned_cols=117 Identities=11% Similarity=-0.013 Sum_probs=107.8
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 80 FLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 80 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
..++++++++|+++.+++.+|.++...|++. +|+..|.+++.++|+++.+|+.+|.++...|++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~------ 68 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWD----------DAQKIFQALCMLDHYDARYFLGLGACRQSLGLY------ 68 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHH----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhH------
Confidence 5688999999999999999999999999999 899999999999999999999999999998765
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.+|+++++++|++ +.+++.+|.+|..+|++++|+.+|++++.++|.+..
T Consensus 69 --------------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 69 --------------EQALQSYSYGALMDINE-PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp --------------HHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred --------------HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999998 699999999999999999999999999999987754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-18 Score=151.53 Aligned_cols=185 Identities=12% Similarity=-0.003 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHh----hccCCCCcHHHHHHHHHHHH------------HhhcccchHHHHHhHHHHHHHHHHHHccCCCC
Q psy11738 73 QLILSAYFLVYN----ALPQHEDHYAIHKWLAVILN------------EKATLEGTKARIQQLETIKHHMNKAIELKPDD 136 (323)
Q Consensus 73 ~~~~~A~~~~~~----al~~~p~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 136 (323)
..+++|+..++. ++.++|.. ++...|.... .+.++. +|++.|.+++..+|++
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~----------~A~~~~~~a~~~~p~~ 146 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFE----------KAKESWEMNSEEKLEQ 146 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEE----------CCCCGGGCCHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecc----------cccchhcCCHHHHHHH
Confidence 478899999999 99999986 4444443321 233344 5667788889999999
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch--------------hHHHHHHHHHH
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY--------------SQNVLMLGKTY 202 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--------------~~~~~~lg~~y 202 (323)
+.++..+|.+++..|++ ++|+.+|+++++++|++. ..+++++|.||
T Consensus 147 a~~~~~~g~~~~~~g~~--------------------~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKY--------------------KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp HHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765 999999999999999972 38899999999
Q ss_pred HHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHH
Q psy11738 203 MRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 282 (323)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg 282 (323)
..+|++++|+.+|++++.++|.+..... .++.+++. .+++++|+..|++++.++|++ ..++..+|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~-----------~lg~~~~~---~g~~~~A~~~~~~al~l~P~~-~~a~~~l~ 271 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLS-----------RRGEAHLA---VNDFELARADFQKVLQLYPNN-KAAKTQLA 271 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHH---TTCHHHHHHHHHHHHHHCSSC-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHH-----------HHHHHHHH---CCCHHHHHHHHHHHHHHCCCC-HHHHHHHH
Confidence 9999999999999999999998764322 12222232 689999999999999999998 79999999
Q ss_pred HHHHHhcCHHHH-HHHHHHhhCC
Q psy11738 283 KTYMRLENYEQA-AYYLEMTKNY 304 (323)
Q Consensus 283 ~~y~~~g~~~~A-~~~~~~al~~ 304 (323)
.++..+|++++| ...|++.+..
T Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 272 VCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 5677776644
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=142.94 Aligned_cols=259 Identities=12% Similarity=0.105 Sum_probs=173.6
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-----CCCCCHHHH--HHHHH--HHHHhcccCCCCcHHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-----EYKEDVEII--WRLVR--VKYNLATHSSSLSDADKKQLILSAY 79 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~--~~la~--~y~~~~~~~~~~~~~~~~~~~~~A~ 79 (323)
.+++.+...+..--..+.++++++|..+++++ .-..+.+.+ +.+-. ....++...... .+.....+.+++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~-~~~~~~~~~~~l 85 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGK-TYGNRPTVTELL 85 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC---------CHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCccc-ccccccchHHHH
Confidence 44556666666666668899999999988875 122355554 22222 222223333210 000011112233
Q ss_pred HHHHhhccCCCC--cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC------CChhHHHHHhhHHHHhc
Q psy11738 80 FLVYNALPQHED--HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP------DDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 80 ~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p------~~~~~~~~lg~~~~~~~ 151 (323)
...+..-...+. ....+++.|..+...|++. +|+.+|.+|+++.+ ..+.+++.+|.+++..|
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~ 155 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYV----------EAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC
Confidence 333221111011 1115667889999999998 89999999998843 24568899999999987
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++ ++|+.++++++++.+.. .+.++.++|.+|..+|++++|+.+|++++.+.+..
T Consensus 156 ~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 156 QT--------------------HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp CH--------------------HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred Cc--------------------HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 65 99999999999874321 24578899999999999999999999999875433
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh-----hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK-----QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~-----~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
..... .+.....++..+.. .|++++|+.+|.+++. .+|.. ..+++.+|.+|..+|++++|..++++
T Consensus 216 ~~~~~-----~~~~~~~lg~~y~~---~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 216 QNDRF-----IAISLLNIANSYDR---SGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp TCHHH-----HHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHH-----HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22111 01111223333332 6899999999999999 78877 78999999999999999999999999
Q ss_pred hhCCCCh
Q psy11738 301 TKNYPAV 307 (323)
Q Consensus 301 al~~~~~ 307 (323)
++++.+.
T Consensus 287 al~~~~~ 293 (378)
T 3q15_A 287 GLDHITA 293 (378)
T ss_dssp HHHHCCT
T ss_pred HHHHHHH
Confidence 9988443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-15 Score=142.37 Aligned_cols=226 Identities=8% Similarity=-0.059 Sum_probs=181.0
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHH-------hcccCCCCcHHHHHHHHHHHHHHHHhhcc-CCCCcHHHHHHHH
Q psy11738 31 EEVNKMLESS--EYKEDVEIIWRLVRVKYN-------LATHSSSLSDADKKQLILSAYFLVYNALP-QHEDHYAIHKWLA 100 (323)
Q Consensus 31 ~~A~~~~~~~--~~~~~~~~~~~la~~y~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~ 100 (323)
+.|+..++++ ..|.++++|+.+|..+.. .|+... .....++|+..+++|++ +.|+++.++..+|
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~------a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNN------AKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHH------HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhh------hhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4677778776 489999999999999876 454321 01123479999999998 8999999999999
Q ss_pred HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh-hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy11738 101 VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS-TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179 (323)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~-~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (323)
.++...|+++ +|...|++++++.|.++ .+|..+|.++...|++ ++|+..
T Consensus 329 ~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~--------------------~~A~~~ 378 (530)
T 2ooe_A 329 DYEESRMKYE----------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI--------------------KSGRMI 378 (530)
T ss_dssp HHHHHTTCHH----------HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH--------------------HHHHHH
T ss_pred HHHHhcCCHH----------HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH--------------------HHHHHH
Confidence 9999999888 89999999999999986 6899999988877655 999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHH-HHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHH
Q psy11738 180 FLEAEKQHPLFYSQNVLMLGKT-YMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEE 258 (323)
Q Consensus 180 ~~~al~~~p~~~~~~~~~lg~~-y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (323)
|+++++..|.. ...+...+.+ +...|++++|..+|+++++.+|++..... ..+... ...|++++
T Consensus 379 ~~~Al~~~~~~-~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~-----------~~~~~~---~~~g~~~~ 443 (530)
T 2ooe_A 379 FKKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL-----------AYIDYL---SHLNEDNN 443 (530)
T ss_dssp HHHHHTCTTCC-THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHHH---TTTTCHHH
T ss_pred HHHHHhccCCc-hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHH-----------HHHHHH---HhCCCHhh
Confidence 99999998876 4666655544 45799999999999999999998754321 111111 23689999
Q ss_pred HHHHHHHHHhhCCcc---hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 259 ALKYFLEAEKQHPLF---YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 259 Al~~~~~a~~~~p~~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
|...|++++...|.. ....|..........|+.+.+..++.++++..|+
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999986644 1236777788888899999999999999999884
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-16 Score=128.09 Aligned_cols=193 Identities=11% Similarity=0.055 Sum_probs=151.8
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHH
Q psy11738 77 SAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 77 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~ 156 (323)
+|+.+|+++.+. .++.+++.+|.++...+++. +|+++|+++++. .++.+++.||.+|.. +..
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~----------~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~--- 65 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQ----------KAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQ--- 65 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHT--TCHHHHHHHHHHTTS-STT---
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHH----------HHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCC---
Confidence 478899999886 68999999999999988888 899999999865 689999999998876 411
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCCCCCC--chhhh
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPVKQ--DKDQC 230 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~--~~~~~ 230 (323)
..++++|+.+|+++.+ +++ +.++++||.+|.. .+++++|+.+|+++....|.+ ....
T Consensus 66 -------------~~~~~~A~~~~~~A~~--~g~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~- 128 (212)
T 3rjv_A 66 -------------QADYPQARQLAEKAVE--AGS-KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQ- 128 (212)
T ss_dssp -------------SCCHHHHHHHHHHHHH--TTC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHH-
T ss_pred -------------CCCHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHH-
Confidence 1256999999999965 565 6999999999998 999999999999999987632 2211
Q ss_pred hhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh-c-----CHHHHHHHHHHhhC
Q psy11738 231 FEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-E-----NYEQAAYYLEMTKN 303 (323)
Q Consensus 231 ~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~-g-----~~~~A~~~~~~al~ 303 (323)
+ .++..+. +....+++++|+.+|+++... |++ +.+++.||.+|... | ++++|+.+|++|.+
T Consensus 129 ~----------~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~-~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 129 M----------LLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT-GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp H----------HHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 1 1222222 222357899999999999998 555 67899999999864 3 89999999999998
Q ss_pred CCChhHHHHHHHHH
Q psy11738 304 YPAVQEATKLLEKA 317 (323)
Q Consensus 304 ~~~~~~~~~~l~~~ 317 (323)
.. +.++...|.+.
T Consensus 197 ~g-~~~A~~~l~~l 209 (212)
T 3rjv_A 197 EG-FDTGCEEFDRI 209 (212)
T ss_dssp HT-CHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHh
Confidence 75 34455555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=149.87 Aligned_cols=203 Identities=8% Similarity=-0.035 Sum_probs=169.2
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++|+..+.++++++|++..+|++.+.++..+++..+.........++++.++++++.+|++..+|+..|.+....+..
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~-- 123 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP-- 123 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC--
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc--
Confidence 569999999999999999999999999999987432222333455899999999999999999999999998877632
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC-CHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE-NYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
++++++.++.++++++|.+ ..+|.+.+.++...| .++++++++++++..+|.+..+..
T Consensus 124 ----------------~~~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~---- 182 (567)
T 1dce_A 124 ----------------NWARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH---- 182 (567)
T ss_dssp ----------------CHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH----
T ss_pred ----------------cHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH----
Confidence 4599999999999999999 599999999999999 999999999999999999976533
Q ss_pred chhHHHHHHHHHhh-cc--------CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHH------------
Q psy11738 235 DMPWYQRKIANAIF-DT--------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ------------ 293 (323)
Q Consensus 235 ~~~~~~~~~a~~~~-~~--------~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~------------ 293 (323)
.+..+.... .. ...+.++++++++.+|+.++|++ ..+|++++.++...+++++
T Consensus 183 -----~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~-~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 256 (567)
T 1dce_A 183 -----YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWLLGRAEPHDVLCCVHVSREEAC 256 (567)
T ss_dssp -----HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC-SHHHHHHHHHHSCCCCCSCEEEEEEETTTTE
T ss_pred -----HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC-ccHHHHHHHHHhcCCCccceeeeeeccCCce
Confidence 333221111 11 12367999999999999999999 7999999999999998777
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|+.+|.+++.++|.
T Consensus 257 ~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 257 LSVCFSRPLTVGSR 270 (567)
T ss_dssp EEEEEEEEECTTBT
T ss_pred EEEEeccceecccc
Confidence 66778888888775
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=142.71 Aligned_cols=194 Identities=12% Similarity=0.022 Sum_probs=160.2
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHH-------hhcccchHHHHHhHHHHHHHHHHHHc-cCCCChhHHHHHhhHH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNE-------KATLEGTKARIQQLETIKHHMNKAIE-LKPDDSTTLFMLGMWC 147 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~~al~-l~p~~~~~~~~lg~~~ 147 (323)
++++..|++++..+|.++.++..+|.++.. .|++..+. ....+|+..|++|++ +.|++..+|..+|.++
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~---~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK---LFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH---HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhh---hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 467889999999999999999999999876 56653110 011268899999998 8999999999999998
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
...|++ ++|...|++++++.|.+...+|..+|.++.+.|++++|+..|++|++..|....
T Consensus 332 ~~~g~~--------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 332 ESRMKY--------------------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp HHTTCH--------------------HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred HhcCCH--------------------HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 887755 999999999999999873358999999999999999999999999999876432
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
... . .++. .+. ..|++++|...|+++++.+|++ +..|..+|.++...|+.++|...|++++...|
T Consensus 392 ~~~-~---~a~~-------~~~--~~~~~~~A~~~~e~al~~~p~~-~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 392 VYV-T---AALM-------EYY--CSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHH-H---HHHH-------HHH--HTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHH-H---HHHH-------HHH--HcCChhHHHHHHHHHHHHCCCC-HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 211 0 0111 010 1578999999999999999998 79999999999999999999999999998754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-15 Score=130.40 Aligned_cols=248 Identities=8% Similarity=0.033 Sum_probs=183.5
Q ss_pred HHHHhhhHHHhhccH-HHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 16 EFLKKSDDLFEEQQF-EEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~-~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
.++.....++..+.+ ++|+.++.++ .+|++..++...+.+...++. .+++++.++++++..+|++
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~------------~l~eEL~~~~~~L~~nPKn 122 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK------------SLEDELRLMNEFAVQNLKS 122 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHHhCCCc
Confidence 344444444455544 6899999987 599999999999999988873 2567999999999999999
Q ss_pred HHHHHHHHHHHHHh-h-cccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 93 YAIHKWLAVILNEK-A-TLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 93 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
..++...+.++..+ + ++. +++++++++++.+|.|..+|...+.+....+.+.....
T Consensus 123 y~aW~hR~wlL~~l~~~~~~----------~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~------------ 180 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPV----------SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISE------------ 180 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCH----------HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCH------------
T ss_pred HHHHHHHHHHHHHhcCCChH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccch------------
Confidence 99999999999988 6 555 78889999999999999999999998887765410000
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCC-------HHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN-------YEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKI 243 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 243 (323)
..+.+++.++.++++.+|.| ..+|.+.+.++..+++ ++++++++++++.++|.+.....+. +.+
T Consensus 181 ~~~~eELe~~~k~I~~dp~N-~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Yl--------r~L 251 (349)
T 3q7a_A 181 AQWGSELDWCNEMLRVDGRN-NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYL--------RGF 251 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH--------HHH
T ss_pred hhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH--------HHH
Confidence 01149999999999999999 5999999999999997 7999999999999999997664321 111
Q ss_pred HHHhhccCCCC----------------cHHHHHHHHHHHHhhC------CcchhhhhHHHHHHHHHhcCHHHHHHHHHHh
Q psy11738 244 ANAIFDTLPTS----------------SYEEALKYFLEAEKQH------PLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 301 (323)
Q Consensus 244 a~~~~~~~~~~----------------~~~~Al~~~~~a~~~~------p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 301 (323)
... .+.. .. ...+-...+...+... +.. +.++..|+.+|...|+.++|..+|+..
T Consensus 252 l~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 252 LKH-FSLP-LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV-PLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp HHH-TTCC-SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHh-cCCC-cccccccccccccccccccchhHHHHHHHHHhcccccccCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 100 0000 00 1222233333333222 344 578899999999999999999999998
Q ss_pred h-CCCChhH
Q psy11738 302 K-NYPAVQE 309 (323)
Q Consensus 302 l-~~~~~~~ 309 (323)
. +.+|-..
T Consensus 329 ~~~~dpir~ 337 (349)
T 3q7a_A 329 SSEYDQMRA 337 (349)
T ss_dssp HHTTCGGGH
T ss_pred HhhhChHHH
Confidence 6 6677643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=139.92 Aligned_cols=69 Identities=12% Similarity=-0.047 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhccc
Q psy11738 31 EEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 31 ~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
++|+..++++.+. ++++++.+|.++...+... .+++++|+.+++++++. .++.+++.+|.+|...+...
T Consensus 55 ~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~--------~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~ 123 (452)
T 3e4b_A 55 KQAEATYRAAADT-SPRAQARLGRLLAAKPGAT--------EAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSF 123 (452)
T ss_dssp -----------------CHHHHHHHHHTC--CC--------HHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCC--------CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCC
Confidence 4555555444222 4444555555443333211 24678899999999884 45568888888888776643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=121.93 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=92.0
Q ss_pred HHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11738 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204 (323)
Q Consensus 125 ~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~ 204 (323)
.|.++++++|++..+++.+|..++..|++ ++|+..|+++++++|++ +.+++.+|.+|..
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~ 64 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKW--------------------DDAQKIFQALCMLDHYD-ARYFLGLGACRQS 64 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccH--------------------HHHHHHHHHHHHhCCcc-HHHHHHHHHHHHH
Confidence 57888888999888999999888887655 89999999999999987 6888889988888
Q ss_pred cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHH
Q psy11738 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 284 (323)
Q Consensus 205 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~ 284 (323)
.|++++|+.+|++++.+ +|++ +..++.+|.+
T Consensus 65 ~g~~~~A~~~~~~al~~------------------------------------------------~p~~-~~~~~~lg~~ 95 (142)
T 2xcb_A 65 LGLYEQALQSYSYGALM------------------------------------------------DINE-PRFPFHAAEC 95 (142)
T ss_dssp TTCHHHHHHHHHHHHHH------------------------------------------------CTTC-THHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhc------------------------------------------------CCCC-cHHHHHHHHH
Confidence 88887777777766655 4444 4556777777
Q ss_pred HHHhcCHHHHHHHHHHhhCCCCh-hHHHHHHHHHHhhh
Q psy11738 285 YMRLENYEQAAYYLEMTKNYPAV-QEATKLLEKAKSYL 321 (323)
Q Consensus 285 y~~~g~~~~A~~~~~~al~~~~~-~~~~~~l~~~~~~~ 321 (323)
|..+|++++|+.+|++++++.|. .+...+..++..++
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 77777777777777777777553 23334444444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-15 Score=128.41 Aligned_cols=192 Identities=9% Similarity=-0.010 Sum_probs=159.5
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhh--cccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH----HH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKA--TLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC----FE 149 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~----~~ 149 (323)
++|+..+.+++.++|++..+++..+.++..++ ++. +++.++++++.++|++..+|+..+.+. ..
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~----------eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLY----------DELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHH----------HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHH----------HHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh
Confidence 56999999999999999999999999999988 666 889999999999999999999999887 33
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHH--HHHHHHHHHhCCCCCCch
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYE--QAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~--~A~~~~~~al~~~~~~~~ 227 (323)
.+. .+++++++.++.++++++|.+ ..+|.+.+.++..+|+++ ++++++++++..+|.+..
T Consensus 120 l~~-----------------~~~~~~EL~~~~~~l~~~pkn-y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s 181 (306)
T 3dra_A 120 NNN-----------------DFDPYREFDILEAMLSSDPKN-HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS 181 (306)
T ss_dssp TTT-----------------CCCTHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred ccc-----------------cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence 310 134599999999999999999 599999999999999999 999999999999999876
Q ss_pred hhhhhhcchhHHHHHHHHHhhcc-CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHH-HHHHHHHhhCCC
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDT-LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ-AAYYLEMTKNYP 305 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~-A~~~~~~al~~~ 305 (323)
+ |..+.....-++. .+...++++++++.+++.++|++ ..+|+.++.++...|+..+ ...++.++++++
T Consensus 182 A---------W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 182 A---------WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN-PSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp H---------HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred H---------HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 5 3333322111110 00113899999999999999999 7999999999999999665 556888887765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=134.87 Aligned_cols=199 Identities=10% Similarity=-0.030 Sum_probs=126.3
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHH
Q psy11738 43 KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETI 122 (323)
Q Consensus 43 ~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (323)
|.++..+..+|.++...|+ +++|+..+++++.++|+++.++..+|.++..+|++. +|
T Consensus 1 p~~a~~~~~~g~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~----------~A 57 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRK-------------YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE----------QA 57 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH----------HH
T ss_pred ChhHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH----------HH
Confidence 4556667777777776664 355777777777777777777777777777777777 67
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 202 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y 202 (323)
+..++++++++|+++.+++.+|.++...|++ ++|+..|+++++++|++ ..++.......
T Consensus 58 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~l~p~~-~~~~~~~~~~~ 116 (281)
T 2c2l_A 58 LADCRRALELDGQSVKAHFFLGQCQLEMESY--------------------DEAIANLQRAYSLAKEQ-RLNFGDDIPSA 116 (281)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHT-TCCCCSHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCccc-hhhHHHHHHHH
Confidence 7777777777777777777777777776544 77777777777776654 22111111111
Q ss_pred HHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHH
Q psy11738 203 MRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 282 (323)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg 282 (323)
. +..++..+........|.+..... . +...+ .|++++|++.++++++++|++ ......++
T Consensus 117 ~---~~~~~~~~~~~~~~~~~~~~~i~~-~----------l~~l~-----~~~~~~A~~~~~~al~~~p~~-~~~~~~l~ 176 (281)
T 2c2l_A 117 L---RIAKKKRWNSIEERRIHQESELHS-Y----------LTRLI-----AAERERELEECQRNHEGHEDD-GHIRAQQA 176 (281)
T ss_dssp H---HHHHHHHHHHHHHTCCCCCCHHHH-H----------HHHHH-----HHHHHHHHTTTSGGGTTTSCH-HHHTHHHH
T ss_pred H---HHHHHHHHHHHHHHHHhhhHHHHH-H----------HHHHH-----HHHHHHHHHHHHhhhccccch-hhhhhHHH
Confidence 1 112222232333333333332211 0 01111 367889999999999999987 56677777
Q ss_pred HHHHHh-cCHHHHHHHHHHhhCCC
Q psy11738 283 KTYMRL-ENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 283 ~~y~~~-g~~~~A~~~~~~al~~~ 305 (323)
..+... +.+++|...|.++.+..
T Consensus 177 ~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 177 CIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Confidence 777766 77888999998887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=135.77 Aligned_cols=195 Identities=13% Similarity=0.037 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhhccCC--------CCcHH---HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC-----
Q psy11738 73 QLILSAYFLVYNALPQH--------EDHYA---IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD----- 136 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~--------p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~----- 136 (323)
+++++|..+++++.+.. |+... .+...|.++...|++. +|.++|.+++++.+..
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~ 74 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLE----------QAKDAYLQEAEAHANNRSLFH 74 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHcCCHHH
Confidence 45666776666665432 22222 3344467777778777 8889999999987643
Q ss_pred -hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC--c---hhHHHHHHHHHHHHcCCHHH
Q psy11738 137 -STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL--F---YSQNVLMLGKTYMRLENYEQ 210 (323)
Q Consensus 137 -~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~---~~~~~~~lg~~y~~~g~~~~ 210 (323)
..++..+|.+|...|++ ++|+.+|++++++.+. + ...++.++|.+|.. |++++
T Consensus 75 ~a~~~~~lg~~~~~~g~~--------------------~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRM--------------------PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCG--------------------GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 44788889888887766 9999999999998432 1 24678999999999 99999
Q ss_pred HHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-----hhhhHHHHHHH
Q psy11738 211 AAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTY 285 (323)
Q Consensus 211 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-----~~~~~~lg~~y 285 (323)
|+.+|++++.+.|....... .......++..+.. .|+|++|+.+|.+++.+.|+.. ...++.+|.++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~-----~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQ-----AAELIGKASRLLVR---QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 99999999998765432111 01112233333333 7899999999999999876541 23678899999
Q ss_pred HHhcCHHHHHHHHHHhhCCCCh
Q psy11738 286 MRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 286 ~~~g~~~~A~~~~~~al~~~~~ 307 (323)
..+|++++|+.+|++++ ++|.
T Consensus 206 ~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHcCCHHHHHHHHHHHh-CCCC
Confidence 99999999999999999 8875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=130.90 Aligned_cols=169 Identities=12% Similarity=-0.010 Sum_probs=137.4
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|.++.++..+|..+...|++. +|+..|.++++++|+++.+++.+|.++...|++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~---------------- 54 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYP----------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQP---------------- 54 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH----------------
T ss_pred ChhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH----------------
Confidence 677889999999999999999 899999999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
++|+..|+++++++|++ ..+++.+|.+|..+|++++|+.+|++++.++|++..... ...+...
T Consensus 55 ----~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~----~~~~~~~-------- 117 (281)
T 2c2l_A 55 ----EQALADCRRALELDGQS-VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG----DDIPSAL-------- 117 (281)
T ss_dssp ----HHHHHHHHHHTTSCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC----SHHHHHH--------
T ss_pred ----HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH----HHHHHHH--------
Confidence 99999999999999998 699999999999999999999999999999887643211 1111111
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
+..++..+........|.. ..+...++..+ .|++++|++.|+++++++|.+.
T Consensus 118 -----~~~~~~~~~~~~~~~~~~~-~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 118 -----RIAKKKRWNSIEERRIHQE-SELHSYLTRLI--AAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp -----HHHHHHHHHHHHHTCCCCC-CHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHH
T ss_pred -----HHHHHHHHHHHHHHHHhhh-HHHHHHHHHHH--HHHHHHHHHHHHhhhccccchh
Confidence 1223334444444556665 56667777765 7999999999999999988743
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-15 Score=121.57 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHH
Q psy11738 47 EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHM 126 (323)
Q Consensus 47 ~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 126 (323)
-.++.+|.++...|+ +++|+..+++++ +| ++.++..+|.++...|++. +|+.+|
T Consensus 7 ~~~~~~g~~~~~~~~-------------~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~----------~A~~~~ 60 (213)
T 1hh8_A 7 ISLWNEGVLAADKKD-------------WKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMT----------EAEKAF 60 (213)
T ss_dssp HHHHHHHHHHHHTTC-------------HHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHH----------HHHHHH
T ss_pred HHHHHHHHHHHHhCC-------------HHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHH----------HHHHHH
Confidence 346778888887774 577999999996 44 7889999999999999999 899999
Q ss_pred HHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh--------------
Q psy11738 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS-------------- 192 (323)
Q Consensus 127 ~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------- 192 (323)
.++++++|+++.+++.+|.++...|++ ++|+.+|++++++.|++ .
T Consensus 61 ~~al~~~~~~~~~~~~lg~~~~~~~~~--------------------~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~ 119 (213)
T 1hh8_A 61 TRSINRDKHLAVAYFQRGMLYYQTEKY--------------------DLAIKDLKEALIQLRGN-QLIDYKILGLQFKLF 119 (213)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHTTTTC-SEEECGGGTBCCEEE
T ss_pred HHHHHhCccchHHHHHHHHHHHHcccH--------------------HHHHHHHHHHHHhCCCc-cHHHHHHhccccCcc
Confidence 999999999999999999999998765 99999999999988875 4
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 193 --QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 193 --~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
.+++++|.+|..+|++++|+.+|++++.++|.+.
T Consensus 120 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 120 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred chHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 8899999999999999999999999999998753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-15 Score=132.26 Aligned_cols=242 Identities=13% Similarity=0.026 Sum_probs=176.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCC-H----HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS--EYKED-V----EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~-~----~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
....+..+..++..|++++|+..+.++ ..|.+ . .++..+|.++...|+ +++|+..+++++
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al 80 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE-------------LTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCc-------------HHHHHHHHHHHH
Confidence 344577888889999999999998875 23332 2 245677777777774 466888888888
Q ss_pred cCCCCcHH------HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC--------CCChhHHHHHhhHHHHhcC
Q psy11738 87 PQHEDHYA------IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK--------PDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 87 ~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~--------p~~~~~~~~lg~~~~~~~~ 152 (323)
.+.|.... ++..+|.++...|++. +|..++.+++++. |....++..+|.+++..|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQ----------TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 87665433 3577899999999998 8888899988875 3344567889999988876
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch-
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK- 227 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~- 227 (323)
+ ++|+.++.+++++.|.. ...++..+|.++...|++++|..++++++.+.+....
T Consensus 151 ~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 151 L--------------------DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp H--------------------HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred H--------------------HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 5 99999999999987652 1357889999999999999999999999876433211
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch---hhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY---SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
...... .....+.... ..|++++|...+.+++...|... ...+..+|.++...|++++|...+++++.+
T Consensus 211 ~~~~~~-----~~~~~~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 211 SDWISN-----ANKVRVIYWQ---MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHH-----HHHHHHHHHH---HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHH-----HHHHHHHHHH---HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 101000 0001111111 16889999999999988776421 124678899999999999999999998876
Q ss_pred CC
Q psy11738 305 PA 306 (323)
Q Consensus 305 ~~ 306 (323)
.+
T Consensus 283 ~~ 284 (373)
T 1hz4_A 283 AR 284 (373)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=112.50 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHH
Q psy11738 47 EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHM 126 (323)
Q Consensus 47 ~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 126 (323)
++++.+|.++...|+ +++|+.+++++++.+|.++.++..+|.++...|++. +|...+
T Consensus 2 ~~~~~l~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~ 58 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGD-------------YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD----------EAIEYY 58 (136)
T ss_dssp HHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHHHH
T ss_pred cHHHHHHHHHHHcCc-------------HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHH----------HHHHHH
Confidence 467788888888774 467999999999999999999999999999999988 899999
Q ss_pred HHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC
Q psy11738 127 NKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 206 (323)
Q Consensus 127 ~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g 206 (323)
++++...|.++.++..+|.++...|++ ++|+..|+++++..|++ ..++..+|.++...|
T Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~ 117 (136)
T 2fo7_A 59 QKALELDPRSAEAWYNLGNAYYKQGDY--------------------DEAIEYYQKALELDPRS-AEAWYNLGNAYYKQG 117 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCchHHHHHHHHHHHHhcCH--------------------HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHc
Confidence 999999999999999999999887655 99999999999999997 689999999999999
Q ss_pred CHHHHHHHHHHHhCCCCC
Q psy11738 207 NYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 207 ~~~~A~~~~~~al~~~~~ 224 (323)
++++|+.++++++..+|.
T Consensus 118 ~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 118 DYDEAIEYYQKALELDPR 135 (136)
T ss_dssp CHHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHccCCC
Confidence 999999999999988775
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=129.82 Aligned_cols=169 Identities=16% Similarity=0.141 Sum_probs=143.3
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-C---------CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-E---------YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSA 78 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~---------~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A 78 (323)
..|..+..+...|..++..|++++|+..++++ . .|..+.++..+|.+|...|++ ++|
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A 104 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY-------------KEA 104 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH-------------HHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH-------------HHH
Confidence 34667778889999999999999999999876 1 355677888999999888854 557
Q ss_pred HHHHHhhccC--------CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--------CCCChhHHHH
Q psy11738 79 YFLVYNALPQ--------HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--------KPDDSTTLFM 142 (323)
Q Consensus 79 ~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--------~p~~~~~~~~ 142 (323)
+.++++++++ +|..+.++..+|.++...|++. +|..+|++++++ +|....++..
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE----------EVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 7777777776 5888899999999999999998 899999999998 7777889999
Q ss_pred HhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc------------------------------------
Q psy11738 143 LGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------------------------------------ 186 (323)
Q Consensus 143 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------------------------ 186 (323)
+|.++...|++ ++|+.+|++++++
T Consensus 175 la~~~~~~g~~--------------------~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (283)
T 3edt_B 175 LASCYLKQGKY--------------------QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234 (283)
T ss_dssp HHHHHHHHTCH--------------------HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----
T ss_pred HHHHHHHcCCH--------------------HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH
Confidence 99999998866 8888888888875
Q ss_pred -------------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 187 -------------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 187 -------------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
.|.. ..++..+|.+|..+|++++|+.+|++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 235 GEYGSWYKACKVDSPTV-NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp --------CCCCCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2333 467999999999999999999999999876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=131.16 Aligned_cols=191 Identities=14% Similarity=0.072 Sum_probs=137.2
Q ss_pred HHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc------HHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 51 RLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH------YAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 51 ~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
+.+.+|...|+ +++|+.++.+++++.+.. +.++..+|.++..+|++. +|+.
T Consensus 41 ~a~~~~~~~g~-------------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~----------~A~~ 97 (307)
T 2ifu_A 41 KAAVAFKNAKQ-------------LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP----------EAVQ 97 (307)
T ss_dssp HHHHHHHHTTC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG----------GGHH
T ss_pred HHHHHHHHcCC-------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH----------HHHH
Confidence 34667776664 566888888888876543 557888999999999999 8888
Q ss_pred HHHHHHccCCCC------hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhH
Q psy11738 125 HMNKAIELKPDD------STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQ 193 (323)
Q Consensus 125 ~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~ 193 (323)
+|++++++.+.. ..++..+|.+|.. |++ ++|+.+|++++++.|.. ...
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~--------------------~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL--------------------SKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH--------------------HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH--------------------HHHHHHHHHHHHHHHhCCChhHHHH
Confidence 999999885432 3467778877765 654 99999999999986542 136
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 194 NVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 194 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
++.++|.+|..+|++++|+.+|++++.+.|.+..... .......++...+. .|++++|+.+|++++ ++|.+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~g~~~~~---~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT-----CYKKCIAQVLVQLH---RADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHH---TTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH-----HHHHHHHHHHHHHH---cCCHHHHHHHHHHHh-CCCCC
Confidence 7999999999999999999999999998765542111 00111122222222 589999999999999 99976
Q ss_pred hhh-----hhHHHHHHHHHhcCHHHHHH
Q psy11738 274 YSQ-----NVLMLGKTYMRLENYEQAAY 296 (323)
Q Consensus 274 ~~~-----~~~~lg~~y~~~g~~~~A~~ 296 (323)
.. ....++.++ ..|+.+.+..
T Consensus 228 -~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 228 -SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp -TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 32 244555555 5677655444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=115.26 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 68 DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
..++.+.|++|+..++++++++|++++++.++|.++..++++......++...+|+..|++||+++|++..+++++|.+|
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999998888888999999999999999999999999999999
Q ss_pred HHhcCC--cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 148 FEITDM--PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 148 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
...|.+ .|. .. .++|++|+.+|++|++++|++
T Consensus 91 ~~lg~l~P~~~-~a----------~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 91 TSFAFLTPDET-EA----------KHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHCCCHH-HH----------HHHHHHHHHHHHHHHHHCTTC
T ss_pred HHhcccCcchh-hh----------hccHHHHHHHHHHHHHhCCCC
Confidence 987621 110 00 135699999999999999997
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-16 Score=132.18 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=145.7
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--------CCCChhHHHHHhhHHHHhcCCcHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--------KPDDSTTLFMLGMWCFEITDMPWYQR 158 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--------~p~~~~~~~~lg~~~~~~~~~~~~~~ 158 (323)
.-+|.++.++..+|.++...|++. +|..+|.+++++ .|....++..+|.++...|++
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----- 85 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYE----------VAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY----- 85 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH-----
T ss_pred CcchHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH-----
Confidence 456888899999999999999998 888899999985 677788999999999998765
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC-----CCC
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEKQ--------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP-----VKQ 225 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-----~~~ 225 (323)
++|+.+|++++++ +|.. ..++..+|.+|...|++++|+.++++++.+. +.+
T Consensus 86 ---------------~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 86 ---------------KDAANLLNDALAIREKTLGKDHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ---------------HHHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999987 3443 5789999999999999999999999999874 222
Q ss_pred chhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh--------CCcchhhhhHHHHHHHHHhcCHHHHHHH
Q psy11738 226 DKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--------HPLFYSQNVLMLGKTYMRLENYEQAAYY 297 (323)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~--------~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 297 (323)
... ......++..+.. .|++++|+.+|.+++.+ +|.. ..++..+|.+|...|++++|+.+
T Consensus 150 ~~~--------~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~ 217 (311)
T 3nf1_A 150 PDV--------AKQLNNLALLCQN---QGKYEEVEYYYQRALEIYQTKLGPDDPNV-AKTKNNLASCYLKQGKFKQAETL 217 (311)
T ss_dssp HHH--------HHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHTSCTTCHHH-HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHH--------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 211 1112223333332 68999999999999998 6766 67899999999999999999999
Q ss_pred HHHhhCCCCh
Q psy11738 298 LEMTKNYPAV 307 (323)
Q Consensus 298 ~~~al~~~~~ 307 (323)
|++++++.|.
T Consensus 218 ~~~al~~~~~ 227 (311)
T 3nf1_A 218 YKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-16 Score=139.24 Aligned_cols=151 Identities=18% Similarity=0.095 Sum_probs=134.4
Q ss_pred hhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc-----------
Q psy11738 26 EEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH----------- 92 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 92 (323)
..+++++|+..+... ..|.++.++..+|.+|...|+ +++|+.+|+++++++|.+
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~-------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~ 191 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK-------------YKQALLQYKKIVSWLEYESSFSNEEAQKA 191 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHTTTCCCCCSHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 456677777777665 377888899999999988884 577999999999999999
Q ss_pred ----HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 93 ----YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 93 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+.++.++|.++..+|++. +|+.+|+++++++|+++.+++.+|.++..+|++
T Consensus 192 ~~~~~~~~~nla~~~~~~g~~~----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~--------------- 246 (336)
T 1p5q_A 192 QALRLASHLNLAMCHLKLQAFS----------AAIESCNKALELDSNNEKGLSRRGEAHLAVNDF--------------- 246 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH---------------
Confidence 689999999999999999 899999999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH-HHHHHHHhC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA-AYYLEMTKN 220 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~ 220 (323)
++|+.+|+++++++|++ ..++..+|.++..+|++++| ...|++.+.
T Consensus 247 -----~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 247 -----ELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -----HHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 69999999999999999999 556777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=118.74 Aligned_cols=156 Identities=6% Similarity=0.010 Sum_probs=135.4
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
.....+..|..++..|++++|+..++++.+| ++.+++.+|.+|...|+ +++|+.+++++++++|.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~~~~ 70 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKN-------------MTEAEKAFTRSINRDKHL 70 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCccc
Confidence 4456788999999999999999999998644 78999999999999885 467999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh----------------hHHHHHhhHHHHhcCCcHH
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS----------------TTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~----------------~~~~~lg~~~~~~~~~~~~ 156 (323)
+.++..+|.++...|++. +|+..|++++++.|++. .+++.+|.++...|++
T Consensus 71 ~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--- 137 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYD----------LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW--- 137 (213)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH---
T ss_pred hHHHHHHHHHHHHcccHH----------HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH---
Confidence 999999999999999999 89999999999999887 9999999999998765
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++|+.+|+++++++|++ .. +..+.|+..+++.....|..
T Consensus 138 -----------------~~A~~~~~~al~~~p~~-~~------------~~~~~a~~~~~~~~~~~~~~ 176 (213)
T 1hh8_A 138 -----------------KKAEEQLALATSMKSEP-RH------------SKIDKAMECVWKQKLYEPVV 176 (213)
T ss_dssp -----------------HHHHHHHHHHHTTCCSG-GG------------GHHHHHHHHHHTTCCCCCCC
T ss_pred -----------------HHHHHHHHHHHHcCccc-cc------------chHHHHHHHHHhcccccccc
Confidence 99999999999999986 22 45567777777666555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.3e-15 Score=109.70 Aligned_cols=118 Identities=21% Similarity=0.427 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
++|+..|+++++.+|++ ..++..+|.++...|++++|+.++++++...|.+..... .++..+.. .
T Consensus 18 ~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~---~ 82 (136)
T 2fo7_A 18 DEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY-----------NLGNAYYK---Q 82 (136)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHHHHT---T
T ss_pred HHHHHHHHHHHHcCCcc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHH-----------HHHHHHHH---h
Confidence 66666666666666654 455666666666666666666666666655554422110 11111111 4
Q ss_pred CcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 254 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
|++++|+..+.+++...|+. ...+..+|.+|...|++++|..+++++++++|.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 56666777777777777776 677888899999999999999999998887775
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-15 Score=121.77 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=142.8
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
..++...+..|..++..+++++|+..++++...+++.+++.+|.+|.. +.... ++++|+.+++++++ +
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~---------~~~~A~~~~~~A~~--~ 82 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQA---------DYPQARQLAEKAVE--A 82 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSC---------CHHHHHHHHHHHHH--T
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCC---------CHHHHHHHHHHHHH--C
Confidence 466778899999999999999999999998666899999999999987 53322 46889999999965 6
Q ss_pred CcHHHHHHHHHHHHH----hhcccchHHHHHhHHHHHHHHHHHHccCC--CChhHHHHHhhHHHHhcCCcHHHHHHHHHh
Q psy11738 91 DHYAIHKWLAVILNE----KATLEGTKARIQQLETIKHHMNKAIELKP--DDSTTLFMLGMWCFEITDMPWYQRKIANAI 164 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~al~l~p--~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 164 (323)
.++.+++.+|.+|.. .+++. +|+++|+++++..| +++.+++.||.+|..-...
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~----------~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~----------- 141 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVA----------HAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG----------- 141 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHH----------HHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS-----------
T ss_pred CCHHHHHHHHHHHHcCCCCccCHH----------HHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC-----------
Confidence 799999999999976 44454 89999999999998 4699999999998772211
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhCC
Q psy11738 165 FDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-E-----NYEQAAYYLEMTKNY 221 (323)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~-g-----~~~~A~~~~~~al~~ 221 (323)
.+++++|+.+|++++++ |++ +.++++||.+|..- | ++++|+.+|+++.+.
T Consensus 142 -----~~d~~~A~~~~~~A~~~-~~~-~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 142 -----PEDDVKASEYFKGSSSL-SRT-GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp -----SCCHHHHHHHHHHHHHT-SCT-THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHc-CCC-HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 14569999999999998 555 58999999999865 3 899999999999876
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=120.32 Aligned_cols=125 Identities=9% Similarity=0.029 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH-HHHh
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW-CFEI 150 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~-~~~~ 150 (323)
.+.+++|+..++++++.+|.++.++..+|.++...|++. +|+.+|.++++++|+++.++..+|.+ +...
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYS----------NSLLAYRQALQLRGENAELYAALATVLYYQA 92 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 556778999999999999999999999999999999998 89999999999999999999999999 6666
Q ss_pred cCCcHHHHHHHHHhhcCCCCCCH--HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 151 TDMPWYQRKIANAIFDTLPTSSY--EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
| ++ ++|+..|+++++++|++ ..+++.+|.+|...|++++|+.+|++++.++|.+..
T Consensus 93 ~--------------------~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 93 S--------------------QHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp T--------------------TCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred C--------------------CcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 5 44 99999999999999998 699999999999999999999999999999998754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-14 Score=125.15 Aligned_cols=239 Identities=14% Similarity=0.042 Sum_probs=175.9
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC----CCCCCH----HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS----EYKEDV----EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~----~~~~~~----~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
.+...+..++..|++++|...+.++ ....+. .++..+|.++...|++ ++|+.++++++.
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~-------------~~A~~~~~~al~ 121 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL-------------QTAWETQEKAFQ 121 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHH
Confidence 4567788888999999999999876 122232 3356788888887754 557777777776
Q ss_pred CC--------CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC-----hhHHHHHhhHHHHhcCCc
Q psy11738 88 QH--------EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD-----STTLFMLGMWCFEITDMP 154 (323)
Q Consensus 88 ~~--------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~-----~~~~~~lg~~~~~~~~~~ 154 (323)
+. |....++..+|.++...|+++ +|..++.+++.+.|.. ..++..+|.++...|++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~- 190 (373)
T 1hz4_A 122 LINEQHLEQLPMHEFLVRIRAQLLWAWARLD----------EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL- 190 (373)
T ss_dssp HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH-
T ss_pred HHHHhccccCcHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH-
Confidence 54 445667788999999999999 8999999999998763 34678889988888765
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC--chhH--HH--HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 155 WYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL--FYSQ--NV--LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~--~~--~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|+.++++++.+.+. .... .. ..++.++...|++++|..++++++...|.....
T Consensus 191 -------------------~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 191 -------------------DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp -------------------HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred -------------------HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 9999999999987332 2111 11 134566889999999999999999877653211
Q ss_pred hhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc-----chhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 229 QCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 229 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~-----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.... ...++..+.. .|++++|+..+.+++...+. .....+..+|.++...|++++|..++++++.
T Consensus 252 ~~~~-------~~~la~~~~~---~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 252 LQGQ-------WRNIARAQIL---LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GHHH-------HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHH-------HHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1000 1122333332 68999999999999887543 1124678899999999999999999999998
Q ss_pred CCCh
Q psy11738 304 YPAV 307 (323)
Q Consensus 304 ~~~~ 307 (323)
+.+.
T Consensus 322 ~~~~ 325 (373)
T 1hz4_A 322 LANR 325 (373)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=115.87 Aligned_cols=112 Identities=9% Similarity=-0.065 Sum_probs=94.7
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-------ch----hHHHHHHHHHHHHc
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-------FY----SQNVLMLGKTYMRL 205 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~----~~~~~~lg~~y~~~ 205 (323)
...+..+|..++..|++ ++|+..|+++++++|+ +. +.+|.++|.++..+
T Consensus 11 a~~~~~~G~~l~~~g~~--------------------eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L 70 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEY--------------------DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70 (159)
T ss_dssp HHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC
Confidence 34567888888887655 9999999999999999 31 13899999999999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhh----HHH
Q psy11738 206 ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNV----LML 281 (323)
Q Consensus 206 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~----~~l 281 (323)
|++++|+.+|++++. .|.++.+++|++ ..+| +++
T Consensus 71 gr~~eAl~~~~kAL~-----------------------------------------l~n~~~e~~pd~-~~A~~~~~~~r 108 (159)
T 2hr2_A 71 RSFDEALHSADKALH-----------------------------------------YFNRRGELNQDE-GKLWISAVYSR 108 (159)
T ss_dssp TCHHHHHHHHHHHHH-----------------------------------------HHHHHCCTTSTH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----------------------------------------hhhccccCCCch-HHHHHHHHHhH
Confidence 999999998876643 366677889988 7899 999
Q ss_pred HHHHHHhcCHHHHHHHHHHhhCCCChhHH
Q psy11738 282 GKTYMRLENYEQAAYYLEMTKNYPAVQEA 310 (323)
Q Consensus 282 g~~y~~~g~~~~A~~~~~~al~~~~~~~~ 310 (323)
|.++..+|++++|+.+|++++++.|++.+
T Consensus 109 G~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 109 ALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999999999888443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=125.34 Aligned_cols=182 Identities=12% Similarity=0.051 Sum_probs=131.8
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhH------HHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTT------LFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~------~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
|.....+...+..+...|++. +|.+.+.++++..|..... ++.+|.++...|
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~----------~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 129 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYK----------EIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV------------ 129 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS------------
T ss_pred hhHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC------------
Confidence 344445556677777788887 8999999999998876543 445555555544
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC---CCCCchhhhhhhcc
Q psy11738 164 IFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY---PVKQDKDQCFEITD 235 (323)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~ 235 (323)
+|++|+.+|++++++.+.. ...++.++|.+|..+|++++|+.+|++++.+ .|.+.......
T Consensus 130 --------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~--- 198 (293)
T 2qfc_A 130 --------DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV--- 198 (293)
T ss_dssp --------CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH---
T ss_pred --------CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH---
Confidence 5599999999999874432 1357999999999999999999999999944 34332111011
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc-----hhhhhHHHHHHHHHhcCHHHH-HHHHHHhhCCCChhH
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQA-AYYLEMTKNYPAVQE 309 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~-----~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~~~~~~~ 309 (323)
...++..++. .|+|++|+.+|.+++.+.++. .+.+++.+|.+|..+|++++| ..+|++|+.+.....
T Consensus 199 ----~~nlg~~y~~---~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 199 ----RYNHAKALYL---DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp ----HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ----HHhHHHHHHH---HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 1123333333 789999999999999886531 146789999999999999999 888999998754433
Q ss_pred HH
Q psy11738 310 AT 311 (323)
Q Consensus 310 ~~ 311 (323)
..
T Consensus 272 ~~ 273 (293)
T 2qfc_A 272 MH 273 (293)
T ss_dssp CH
T ss_pred cH
Confidence 33
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=113.81 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=94.3
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
+.+.++..+|..+...|++. +|+++|++|++++|+++.++.++|.+++.+|++
T Consensus 6 d~A~a~~~lG~~~~~~~~~~----------~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~----------------- 58 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFE----------KAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF----------------- 58 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------
T ss_pred HHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH-----------------
Confidence 45667889999999999999 999999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHHHhcCCCch------hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 171 SSYEEALKYFLEAEKQHPLFY------SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~------~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
++|+.+|+++++++|++. ..++.++|.+|..+|++++|+++|++++..+|+
T Consensus 59 ---~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 59 ---AECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ---HHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 999999999999988752 247899999999999999999999999998775
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-15 Score=111.18 Aligned_cols=102 Identities=12% Similarity=0.087 Sum_probs=96.7
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCC
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLP 169 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
|..+..+..+|..+...|++. +|+..|.++++++|+++.++..+|.++...|++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~---------------- 54 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWP----------NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF---------------- 54 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH----------------
T ss_pred CchHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH----------------
Confidence 556788999999999999999 899999999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
++|+.+|+++++++|++ +.+++.+|.+|..+|++++|+.+|++++.++
T Consensus 55 ----~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 55 ----PEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp ----HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999998 6999999999999999999999999999998
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-15 Score=109.91 Aligned_cols=119 Identities=12% Similarity=-0.021 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHH
Q psy11738 43 KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETI 122 (323)
Q Consensus 43 ~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (323)
|..++.+..+|.++...|+ +++|+.+|+++++++|+++.++..+|.++..+|++. +|
T Consensus 1 p~~a~~~~~~g~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~----------~A 57 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSD-------------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP----------EA 57 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HH
T ss_pred CchHHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHH----------HH
Confidence 3456788889999988885 567999999999999999999999999999999999 89
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC------CCchhHHHH
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH------PLFYSQNVL 196 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~ 196 (323)
+..|+++++++|+++.+++.+|.++...|++ ++|+.+|+++++++ |++ ..++.
T Consensus 58 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~--------------------~~A~~~~~~al~~~p~~~~~p~~-~~~~~ 116 (126)
T 3upv_A 58 IADCNKAIEKDPNFVRAYIRKATAQIAVKEY--------------------ASALETLDAARTKDAEVNNGSSA-REIDQ 116 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHHHTTTTH-HHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHhCH--------------------HHHHHHHHHHHHhCcccCCchhH-HHHHH
Confidence 9999999999999999999999999998765 99999999999999 887 68888
Q ss_pred HHHHHHHHc
Q psy11738 197 MLGKTYMRL 205 (323)
Q Consensus 197 ~lg~~y~~~ 205 (323)
.++.+...+
T Consensus 117 ~l~~~~~~l 125 (126)
T 3upv_A 117 LYYKASQQR 125 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 888776543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=112.21 Aligned_cols=132 Identities=11% Similarity=0.032 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHH
Q psy11738 46 VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHH 125 (323)
Q Consensus 46 ~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 125 (323)
+..++.+|.++...|+ +++|+.+++++++++|.++.++..+|.++...|++. +|+..
T Consensus 13 ~~~~~~~a~~~~~~~~-------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~ 69 (166)
T 1a17_A 13 AEELKTQANDYFKAKD-------------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG----------YALGD 69 (166)
T ss_dssp HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH----------HHHHH
T ss_pred HHHHHHHHHHHHHccC-------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH----------HHHHH
Confidence 5667778888877774 577999999999999999999999999999999998 89999
Q ss_pred HHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHH--HHHH
Q psy11738 126 MNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG--KTYM 203 (323)
Q Consensus 126 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg--~~y~ 203 (323)
+.++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ ..++..++ ..+.
T Consensus 70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~--------------------~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~ 128 (166)
T 1a17_A 70 ATRAIELDKKYIKGYYRRAASNMALGKF--------------------RAALRDYETVVKVKPHD-KDAKMKYQECNKIV 128 (166)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence 9999999999999999999999998765 99999999999999997 57775554 4488
Q ss_pred HcCCHHHHHHHHHHHhCC
Q psy11738 204 RLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 204 ~~g~~~~A~~~~~~al~~ 221 (323)
..|++++|+.+++++..+
T Consensus 129 ~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 129 KQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccchHHH
Confidence 999999999999987654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-14 Score=121.85 Aligned_cols=168 Identities=13% Similarity=0.050 Sum_probs=133.3
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCH------HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDV------EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~------~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
++....++..+..++..|+|++|+..+.++ ..+... ..++.+|.+|...| .+++|+.++
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~A~~~~ 138 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-------------DYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS-------------CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC-------------CHHHHHHHH
Confidence 455566788999999999999999999875 333333 22344555555444 457799999
Q ss_pred HhhccCCCCc------HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHH---ccCCCCh----hHHHHHhhHHHH
Q psy11738 83 YNALPQHEDH------YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAI---ELKPDDS----TTLFMLGMWCFE 149 (323)
Q Consensus 83 ~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al---~l~p~~~----~~~~~lg~~~~~ 149 (323)
++++++.+.. ..++..+|.+|...|+++ +|..+|++++ +..|++. .+++++|.++..
T Consensus 139 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~----------~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLK----------KGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 9999876554 568899999999999999 8999999999 5566643 588999999999
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHHHcCCHHHH-HHHHHHHhCC
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVLMLGKTYMRLENYEQA-AYYLEMTKNY 221 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~~ 221 (323)
.|++ ++|+.+|++++++.++ ....+++++|.+|..+|++++| ..+|++|+.+
T Consensus 209 ~~~y--------------------~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 209 DSRY--------------------EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCH--------------------HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhhH--------------------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 8755 9999999999987432 1247899999999999999999 8889999875
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.9e-15 Score=109.63 Aligned_cols=102 Identities=13% Similarity=-0.053 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
..++.+|..+...|++. +|+..|+++++++|+++.+|+.+|.++...|++
T Consensus 18 ~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-------------------- 67 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLA----------EAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-------------------- 67 (121)
T ss_dssp SCHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH--------------------
T ss_pred hhHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH--------------------
Confidence 34688899999999998 899999999999999999999999999998765
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+.+|+++++++|++ +.+++.+|.+|...|++++|+.+|+++++++|.+.
T Consensus 68 ~~A~~~~~~al~l~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 68 GLAIIALNHARMLDPKD-IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999998 69999999999999999999999999999998753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.8e-15 Score=114.59 Aligned_cols=111 Identities=14% Similarity=0.012 Sum_probs=103.8
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
..++.++..++.+|.++...|++. +|+.+|.++++++|+++.+++.+|.+++..|++
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~------------- 61 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYS----------KAIDLYTQALSIAPANPIYLSNRAAAYSASGQH------------- 61 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-------------
T ss_pred chhhhhHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH-------------
Confidence 346778899999999999999999 899999999999999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
++|+.+|+++++++|++ ..+++++|.+|..+|++++|+.+|++++.++|++...
T Consensus 62 -------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 62 -------EKAAEDAELATVVDPKY-SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp -------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred -------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 99999999999999998 7999999999999999999999999999999998763
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=106.94 Aligned_cols=122 Identities=9% Similarity=-0.021 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
.|.++..++.+|.++...|++ ++|+.+++++++.+|.++.++..+|.++...+++. +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-------------~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~----------~ 68 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDY-------------PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ----------L 68 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCS-------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHH----------H
T ss_pred CcccHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHH----------H
Confidence 567788888888888888755 55899999999999988888888999988888888 7
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
|+.+++++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ ..++..++.+
T Consensus 69 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~~~~~~p~~-~~~~~~l~~~ 127 (133)
T 2lni_A 69 ALKDCEECIQLEPTFIKGYTRKAAALEAMKDY--------------------TKAMDVYQKALDLDSSC-KEAADGYQRC 127 (133)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCGGG-THHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH--------------------HHHHHHHHHHHHhCCCc-hHHHHHHHHH
Confidence 88889999999999999999999888887655 89999999999998887 6888888888
Q ss_pred HHHcCC
Q psy11738 202 YMRLEN 207 (323)
Q Consensus 202 y~~~g~ 207 (323)
+..+|+
T Consensus 128 ~~~~~~ 133 (133)
T 2lni_A 128 MMAQYN 133 (133)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 887764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=115.86 Aligned_cols=52 Identities=12% Similarity=0.041 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 257 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 257 ~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
++|+..|.+++..+|++ ..+++.+|.+|...|++++|+.+|++++++.|.+.
T Consensus 98 ~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 56666666666667776 67788888888888888888888888888877643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-14 Score=121.70 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhhccCCCCcHHH------HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh------HH
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAI------HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST------TL 140 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~------~~ 140 (323)
+++++|+..++++++..|.++.. +..+|.++...+++. +|+.+|.+++.+.+.... ++
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE----------YCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHH----------HHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHH----------HHHHHHHHHHHHhcccccHHHHHHHH
Confidence 45788999999999988877663 224566666666666 899999999997665433 68
Q ss_pred HHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 141 FMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 141 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
..+|.+|...|++ ++|+.+|+++++. ++.....+++++|.+|..+|++++|+.+
T Consensus 159 ~~lg~~y~~~g~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 159 NAIANIYAENGYL--------------------KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp HHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCH--------------------HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8999999988765 9999999999953 2222246799999999999999999999
Q ss_pred HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcC-HHH
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN-YEQ 293 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~-~~~ 293 (323)
+++++.+.+... ..+.. +.+++.+|.+|..+|+ +++
T Consensus 219 ~~~al~~~~~~~------------------------------------------~~~~~-~~~~~~lg~~~~~~g~~~~~ 255 (293)
T 3u3w_A 219 VNKAIEISCRIN------------------------------------------SMALI-GQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHTT------------------------------------------BCTTH-HHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHcC------------------------------------------cHHHH-HHHHHHHHHHHHHhCCcHHH
Confidence 999987632211 01222 5778999999999995 699
Q ss_pred HHHHHHHhhCCCCh
Q psy11738 294 AAYYLEMTKNYPAV 307 (323)
Q Consensus 294 A~~~~~~al~~~~~ 307 (323)
|+.+|++|+.+...
T Consensus 256 A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 256 IEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999977543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=113.10 Aligned_cols=117 Identities=13% Similarity=0.023 Sum_probs=105.9
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
.+.+++.++.+|.++...|+ +++|+.+|+++++++|+++.++..+|.++..+|++. +
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~----------~ 63 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKE-------------YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE----------K 63 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH----------H
T ss_pred hhhhHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHH----------H
Confidence 56678899999999998885 567999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
|+.+|+++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ ..+++..+..
T Consensus 64 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~~~~~~~l~ 122 (164)
T 3sz7_A 64 AAEDAELATVVDPKYSKAWSRLGLARFDMADY--------------------KGAKEAYEKGIEAEGNG-GSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--------------------HHHHHHHHHHHHhCCCc-hHHHHHHHHH
Confidence 99999999999999999999999999998765 99999999999999998 5766666655
Q ss_pred H
Q psy11738 202 Y 202 (323)
Q Consensus 202 y 202 (323)
.
T Consensus 123 ~ 123 (164)
T 3sz7_A 123 T 123 (164)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-14 Score=109.32 Aligned_cols=103 Identities=19% Similarity=0.267 Sum_probs=87.7
Q ss_pred HHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh
Q psy11738 113 KARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS 192 (323)
Q Consensus 113 ~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 192 (323)
.+++....+|++.++++++++|+++.+|.++|.++...+.+..-...+. .+++|+..|+++++++|++ .
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~----------~~~eAi~~le~AL~ldP~~-~ 80 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ----------MIQEAITKFEEALLIDPKK-D 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------HHHHHHHHHHHHHHHCTTC-H
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh----------HHHHHHHHHHHHHHhCcCc-H
Confidence 3566677799999999999999999999999999998875532222221 2489999999999999998 7
Q ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHHHHhCCCCCCc
Q psy11738 193 QNVLMLGKTYMRLE-----------NYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 193 ~~~~~lg~~y~~~g-----------~~~~A~~~~~~al~~~~~~~ 226 (323)
.+++++|.+|..+| ++++|+.+|++|++++|++.
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99999999999885 89999999999999999863
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=106.84 Aligned_cols=123 Identities=13% Similarity=0.067 Sum_probs=104.7
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
+|.++..++.+|.++...|+ +++|+.++++++..+|.++.++..+|.++...|++. +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~ 64 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVEN-------------FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYA----------G 64 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------H
T ss_pred chhhhHHHHHHHHHHHHccC-------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchH----------H
Confidence 45567778888888887774 466899999999999999999999999998888888 8
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
|+..+.++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ ..++..+|.+
T Consensus 65 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~A~~~~~~~~~~~p~~-~~~~~~l~~~ 123 (131)
T 2vyi_A 65 AVQDCERAICIDPAYSKAYGRMGLALSSLNKH--------------------VEAVAYYKKALELDPDN-ETYKSNLKIA 123 (131)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHhcCccCHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHHhcCccc-hHHHHHHHHH
Confidence 88889999999999999999999988887655 99999999999999987 6888889999
Q ss_pred HHHcCCH
Q psy11738 202 YMRLENY 208 (323)
Q Consensus 202 y~~~g~~ 208 (323)
+..+|++
T Consensus 124 ~~~~~~~ 130 (131)
T 2vyi_A 124 ELKLREA 130 (131)
T ss_dssp HHHHTTC
T ss_pred HHHHhcC
Confidence 9888875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=107.58 Aligned_cols=104 Identities=14% Similarity=0.017 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
.+..+..+|.++...|++. +|...|.++++++|+++.++..+|.++...|++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~------------------ 63 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYE----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY------------------ 63 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH------------------
T ss_pred HHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH------------------
Confidence 3455666777777777776 677777777777777777777777777776544
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+.+|+++++++|++ +.+++.+|.++..+|++++|+.+|++++.++|.+.
T Consensus 64 --~~A~~~~~~a~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 64 --GYALGDATRAIELDKKY-IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp --HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred --HHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 77777777777777776 57777777777777777777777777766655543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=120.12 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=148.9
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhc-ccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh-c-C
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKAT-LEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI-T-D 152 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~-~-~ 152 (323)
++|+.++.+++.++|++..++...+.++..++. +. +++..+++++..+|++..+|+..+.+.... + +
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~----------eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLE----------DELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH----------HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC
Confidence 569999999999999999999999999999884 55 888999999999999999999999998877 5 4
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHH--------HHHHHHHHHhCCCCC
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYE--------QAAYYLEMTKNYPVK 224 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~--------~A~~~~~~al~~~~~ 224 (323)
+ ++++.++.++++++|.+ ..+|...+.++...|.++ ++++++++++..+|.
T Consensus 141 ~--------------------~~EL~~~~k~L~~dpkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 141 P--------------------VSEIEYIHGSLLPDPKN-YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp C--------------------HHHHHHHHHHTSSCTTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred h--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 4 89999999999999999 599999999999999988 999999999999999
Q ss_pred CchhhhhhhcchhHHHHHHHHHhhcc--CCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 225 QDKDQCFEITDMPWYQRKIANAIFDT--LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
+..+ |..+.....-.+. .....++++++++.+++.++|++ ..+|+++..++...|+.
T Consensus 200 N~SA---------W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n-~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 200 NNSA---------WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN-VSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CHHH---------HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCC
T ss_pred CHHH---------HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCC
Confidence 8765 3333322111110 01123799999999999999999 79999999999888775
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=111.30 Aligned_cols=105 Identities=10% Similarity=-0.092 Sum_probs=94.5
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-------Chh-----HHHHHhhHHHHhcCCcHHHHH
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-------DST-----TLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-------~~~-----~~~~lg~~~~~~~~~~~~~~~ 159 (323)
.+..+...|..+...|+++ +|+..|++||+++|+ +.. +|.++|.++..+|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~e----------eAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~------ 73 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYD----------EAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF------ 73 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH------
Confidence 3456788899999999999 899999999999999 443 999999999988755
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhc-------CCCchhHHH----HHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQ-------HPLFYSQNV----LMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~----~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.+|.+++++ +|++ ..+| +++|.++..+|++++|+.+|+++++++|.+..
T Consensus 74 --------------~eAl~~~~kAL~l~n~~~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 74 --------------DEALHSADKALHYFNRRGELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp --------------HHHHHHHHHHHHHHHHHCCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred --------------HHHHHHHHHHHHhhhccccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999999 9997 7999 99999999999999999999999999998864
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=103.60 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=69.3
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
..|.++.++..+|.++...+++. +|+..|+++++++|+++.++..+|.++...+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-------------- 66 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYP----------QAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF-------------- 66 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSH----------HHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH--------------
T ss_pred cCcccHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH--------------
Confidence 34566666677777777777666 666677777777777777777777666655443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPV 223 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 223 (323)
++|+.+|+++++++|++ ..+++.+|.+|...|++++|+.+|++++.++|
T Consensus 67 ------~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 67 ------QLALKDCEECIQLEPTF-IKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp ------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred ------HHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 77777777777777765 46667777776666666666666665555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-14 Score=120.97 Aligned_cols=169 Identities=12% Similarity=0.034 Sum_probs=130.2
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHH------HHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHH
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEI------IWRLVRVKYNLATHSSSLSDADKKQLILSAYFLV 82 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~------~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~ 82 (323)
.+....+...+..++..|+|++|+..++++ ..+..++. +..+|.+|...+ .+++|+.++
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~Ai~~~ 138 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV-------------DYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-------------CHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-------------CHHHHHHHH
Confidence 334455667789999999999999999986 34444442 223444443333 567899999
Q ss_pred HhhccCCCCcHH------HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc-------CCCChhHHHHHhhHHHH
Q psy11738 83 YNALPQHEDHYA------IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL-------KPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 83 ~~al~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l-------~p~~~~~~~~lg~~~~~ 149 (323)
++++++.+...+ ++..+|.+|...|+++ +|..+|+++++. .|....+++++|.+|..
T Consensus 139 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 3u3w_A 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLK----------KGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 999987655433 6889999999999998 888899999842 23344578999999999
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCC-HHHHHHHHHHHhCCC
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLEN-YEQAAYYLEMTKNYP 222 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~ 222 (323)
.|++ ++|+.++++++++.+.. .+.+++++|.+|..+|+ +++|+.+|++|+.+.
T Consensus 209 ~~~y--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 209 DSRY--------------------EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTCH--------------------HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhHH--------------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8755 99999999999885332 24789999999999994 799999999999864
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-15 Score=135.61 Aligned_cols=121 Identities=11% Similarity=0.040 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---------------hhH
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---------------STT 139 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---------------~~~ 139 (323)
+++|+..++++++.+|.++.++..+|.++...+++. +|+.+|.+|++++|++ ..+
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 319 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYM----------QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHH----------HHHHHHHHHHHHhcccccCChHHHHHHHHHHHHH
Confidence 445788888888999999999999999999999999 8999999999999999 588
Q ss_pred HHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 140 LFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 140 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
+.++|.+++.++++ ++|+.+|+++++++|++ +.+++++|.+|..+|++++|+.+|++++
T Consensus 320 ~~nla~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 320 FLNLAMCYLKLREY--------------------TKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCH--------------------HHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88999998888655 99999999999999997 6899999999999999988888888888
Q ss_pred CCCCCCc
Q psy11738 220 NYPVKQD 226 (323)
Q Consensus 220 ~~~~~~~ 226 (323)
+++|++.
T Consensus 379 ~l~P~~~ 385 (457)
T 1kt0_A 379 EVNPQNK 385 (457)
T ss_dssp TTC----
T ss_pred HhCCCCH
Confidence 8877654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.1e-15 Score=119.52 Aligned_cols=150 Identities=13% Similarity=0.028 Sum_probs=116.4
Q ss_pred hccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH-----------
Q psy11738 27 EQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY----------- 93 (323)
Q Consensus 27 ~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------- 93 (323)
.|.|++|...+... ..+..+..+..+|.++...|+ +++|+.+|++++++.|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNE-------------INEAIVKYKEALDFFIHTEEWDDQILLDKK 83 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 34555554444332 234456677788888877774 5779999999999999987
Q ss_pred -----HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 94 -----AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 94 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
.++..+|.++..+|++. +|+.++.++++++|+++.+++.+|.++...|++
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~--------------- 138 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYP----------KAIDHASKVLKIDKNNVKALYKLGVANMYFGFL--------------- 138 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH---------------
T ss_pred HHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcccH---------------
Confidence 89999999999999998 899999999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHH-HHHHHHhC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA-YYLEMTKN 220 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~-~~~~~al~ 220 (323)
++|+.+|+++++++|++ ..++..++.++..+++..++. ..+.+.+.
T Consensus 139 -----~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 139 -----EEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -----HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHC-----------
T ss_pred -----HHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998 699999999999999988877 44554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=128.86 Aligned_cols=175 Identities=8% Similarity=-0.051 Sum_probs=151.5
Q ss_pred HHHhhccH-HHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHH
Q psy11738 23 DLFEEQQF-EEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWL 99 (323)
Q Consensus 23 ~~~~~~~~-~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 99 (323)
.+...|++ ++|+..+.++ .+|++..+|...+.++..++.... ++.....+++++.+++++++.+|++..+|.+.
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~---~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR 113 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKS---PEESAALVKAELGFLESCLRVNPKSYGTWHHR 113 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccc---hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 33445666 5679999987 599999999999999999886432 34556678999999999999999999999999
Q ss_pred HHHHHHhh--cccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHH
Q psy11738 100 AVILNEKA--TLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEAL 177 (323)
Q Consensus 100 ~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (323)
+.++..++ ++. +++++++++++++|.|..+|...|.+....+. .+++++
T Consensus 114 ~w~l~~l~~~~~~----------~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-------------------~~~~el 164 (567)
T 1dce_A 114 CWLLSRLPEPNWA----------RELELCARFLEADERNFHCWDYRRFVAAQAAV-------------------APAEEL 164 (567)
T ss_dssp HHHHHTCSSCCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-------------------CHHHHH
T ss_pred HHHHHHcccccHH----------HHHHHHHHHHhhccccccHHHHHHHHHHHcCC-------------------ChHHHH
Confidence 99999998 446 78899999999999999999999999888761 349999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHc--------------CCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 178 KYFLEAEKQHPLFYSQNVLMLGKTYMRL--------------ENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~~lg~~y~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
.++.++++.+|++ ..+|.++|.++..+ +.++++++++.+|+.++|++.....
T Consensus 165 ~~~~~~I~~~p~n-~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 165 AFTDSLITRNFSN-YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp HHHHTTTTTTCCC-HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred HHHHHHHHHCCCC-ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999999999 59999999999886 6689999999999999999976544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-15 Score=120.09 Aligned_cols=167 Identities=14% Similarity=-0.004 Sum_probs=112.6
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
.+..+...+.....++.++ ++.+.+.......+.....+..+|..++..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------------------ 54 (198)
T 2fbn_A 3 SSHHHHHHSSGRENLYFQG----------AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEI------------------ 54 (198)
T ss_dssp -----------------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCH------------------
T ss_pred Ccccccchhhhhhhhhhcc----------ccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCH------------------
Confidence 3444555666666677776 444455555555556677888999999888755
Q ss_pred CHHHHHHHHHHHHhcCCCchh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcc
Q psy11738 172 SYEEALKYFLEAEKQHPLFYS----------------QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITD 235 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~----------------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 235 (323)
++|+..|++++++.|++ + .++.++|.+|..+|++++|+.++++++.++|.+.....
T Consensus 55 --~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----- 126 (198)
T 2fbn_A 55 --NEAIVKYKEALDFFIHT-EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALY----- 126 (198)
T ss_dssp --HHHHHHHHHHHHTTTTC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH-----
T ss_pred --HHHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHH-----
Confidence 99999999999999987 4 78999999999999999999999999999998754321
Q ss_pred hhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHH-HHHHHhhCC
Q psy11738 236 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA-YYLEMTKNY 304 (323)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~-~~~~~al~~ 304 (323)
.++.+++. .+++++|+..|++++.++|++ ..++..++.++..+++..++. ..|.+.+..
T Consensus 127 ------~lg~~~~~---~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 127 ------KLGVANMY---FGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp ------HHHHHHHH---HTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHC------------
T ss_pred ------HHHHHHHH---cccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12222222 688999999999999999998 799999999999999998887 555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-12 Score=111.82 Aligned_cols=252 Identities=10% Similarity=-0.044 Sum_probs=189.0
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCC--cHHH-HHHH-----HHHHHHHHHh
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSL--SDAD-KKQL-----ILSAYFLVYN 84 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~--~~~~-~~~~-----~~~A~~~~~~ 84 (323)
++..+| .+...|-.|+|..++.-..+....+.....+-+.++|..+|.+.... .+.. .... -..|+..+++
T Consensus 13 ~~~~lf-~ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~ 91 (310)
T 3mv2_B 13 DPMDYF-NIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELEN 91 (310)
T ss_dssp --CCTH-HHHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHH
T ss_pred CcHHHH-HHHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 334444 67788889999999998877644455567777889999999876432 1111 1111 1237788998
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC--CChhHHHHHhhHHHHhcCCcHHHHHHHH
Q psy11738 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP--DDSTTLFMLGMWCFEITDMPWYQRKIAN 162 (323)
Q Consensus 85 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p--~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 162 (323)
.++..+....++..+|.++...|+++ +|++.+.+.+..+| ++.+++..++.++..+|+.
T Consensus 92 l~~~~~~~~~~~~~la~i~~~~g~~e----------eAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~--------- 152 (310)
T 3mv2_B 92 LLKDKQNSPYELYLLATAQAILGDLD----------KSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV--------- 152 (310)
T ss_dssp TTTTSCCCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH---------
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHH----------HHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH---------
Confidence 88886666777789999999999999 89999999999997 8889999999999998766
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCC-----CchhHHHHHH--HHHHHHcC--CHHHHHHHHHHHhCCCCCCchhhhhhh
Q psy11738 163 AIFDTLPTSSYEEALKYFLEAEKQHP-----LFYSQNVLML--GKTYMRLE--NYEQAAYYLEMTKNYPVKQDKDQCFEI 233 (323)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~l--g~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~ 233 (323)
+.|.+.+++..+.+| ++ .....| |.+....| ++.+|...|+++....|....... .+
T Consensus 153 -----------d~A~k~l~~~~~~~~d~~~~~d--~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l-Ll 218 (310)
T 3mv2_B 153 -----------STASTIFDNYTNAIEDTVSGDN--EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG-LL 218 (310)
T ss_dssp -----------HHHHHHHHHHHHHSCHHHHHHH--HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH-HH
T ss_pred -----------HHHHHHHHHHHhcCccccccch--HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH-HH
Confidence 999999999999999 33 334444 44466667 999999999999888775111100 01
Q ss_pred cchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh----------CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 234 TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ----------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~----------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
. +.. ..|++++|...++.+... +|++ +.++.++..+...+|+ +|.+++.++.+
T Consensus 219 n-----------~~~---~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~-~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 219 N-----------LHL---QQRNIAEAQGIVELLLSDYYSVEQKENAVLYK-PTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp H-----------HHH---HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH-HHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred H-----------HHH---HcCCHHHHHHHHHHHHHhcccccccccCCCCC-HHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 0 111 168999999999988776 4777 7888899999999998 89999999999
Q ss_pred CCChhHHHHHHH
Q psy11738 304 YPAVQEATKLLE 315 (323)
Q Consensus 304 ~~~~~~~~~~l~ 315 (323)
..|++-...-+.
T Consensus 282 ~~P~hp~i~d~~ 293 (310)
T 3mv2_B 282 LDHEHAFIKHHQ 293 (310)
T ss_dssp TTCCCHHHHHHH
T ss_pred hCCCChHHHHHH
Confidence 988866554333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.4e-14 Score=104.05 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|.++.++..+|.++...+++. +|+..|.+++..+|+++.++..+|.++...|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------- 62 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFE----------AAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY--------------- 62 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred chhhhHHHHHHHHHHHHccCHH----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch---------------
Confidence 3445555555555555555555 555555555555555555555555555554433
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
++|+..|.++++++|++ +.+++.+|.++...|++++|+.++++++.+
T Consensus 63 -----~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 63 -----AGAVQDCERAICIDPAY-SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp -----HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCccC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 55555555555555554 355555555555555555554444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-14 Score=102.60 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=101.2
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
++|+++.++..+|.++...|++. +|+.+|+++++++|.++.+++.+|.++...|++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-------------- 56 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYT----------ESIDLFEKAIQLDPEESKYWLMKGKALYNLERY-------------- 56 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHH----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH--------------
T ss_pred CCCCcHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH--------------
Confidence 47899999999999999999998 899999999999999999999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHc-CCHHHHHHHHHHHhCCCCCCc
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRL-ENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+.+|+++++++|+ + ..++..+|.++... |++++|++++++++...|.+.
T Consensus 57 ------~~A~~~~~~a~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 57 ------EEAVDCYNYVINVIEDEYN-KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp ------HHHHHHHHHHHHTSCCTTC-HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred ------HHHHHHHHHHHHhCcccch-HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999 8 69999999999999 999999999999999988753
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-14 Score=114.60 Aligned_cols=165 Identities=14% Similarity=0.057 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc------cCCCChhHHHHHhh
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE------LKPDDSTTLFMLGM 145 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~------l~p~~~~~~~~lg~ 145 (323)
.|++++|...++......+..+.++..+|.++...|++. +|..++.+++. ..|....++..+|.
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFD----------EARASFQALQQQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHH----------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 456788888555554444478889999999999999998 88889999988 45556778999999
Q ss_pred HHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---CCC---chhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 146 WCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ---HPL---FYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
++...|++ ++|+.+|++++++ .|+ ....++.++|.++...|++++|+.++++++
T Consensus 75 ~~~~~g~~--------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 75 VERMAGNW--------------------DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHTTCH--------------------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCH--------------------HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99988765 9999999999998 342 224679999999999999999999999987
Q ss_pred CCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHH
Q psy11738 220 NYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 299 (323)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 299 (323)
.+.+... +|.....++..+|.+|...|++++|..+++
T Consensus 135 ~~~~~~~-------------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 135 VYAQQAD-------------------------------------------DQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHTT-------------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcc-------------------------------------------chHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 6521110 111113456788899999999999999998
Q ss_pred HhhCCCChhH
Q psy11738 300 MTKNYPAVQE 309 (323)
Q Consensus 300 ~al~~~~~~~ 309 (323)
+++++.....
T Consensus 172 ~al~~~~~~~ 181 (203)
T 3gw4_A 172 RARDIFAELE 181 (203)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 8887754433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.3e-14 Score=106.05 Aligned_cols=108 Identities=15% Similarity=0.071 Sum_probs=99.8
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
..+|.++..+..+|.++...|++. +|+.+|.+++.++|+++.+++.+|.++...+++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~------------- 59 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYP----------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQP------------- 59 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------------
T ss_pred CCccccHHHHHHHHHHHHHhCcHH----------HHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH-------------
Confidence 457889999999999999999999 899999999999999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
++|+.+|+++++++|++ +.+++.+|.+|...|++++|+.+|++++.++|.+
T Consensus 60 -------~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 60 -------EQALADCRRALELDGQS-VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp -------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHhCchh-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 99999999999999998 6999999999999999999999999999998774
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-15 Score=135.40 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=126.5
Q ss_pred hhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc-----------
Q psy11738 26 EEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH----------- 92 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------- 92 (323)
..+++++|+..+... ..|..+..+..+|.+|+..|+ +++|+..|++|++++|.+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-------------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~ 312 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-------------YMQAVIQYGKIVSWLEMEYGLSEKESKAS 312 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHTTCCSCCHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-------------HHHHHHHHHHHHHHhcccccCChHHHHHH
Confidence 345666777666655 366778888899999988774 577999999999999998
Q ss_pred ----HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 93 ----YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 93 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
..++.++|.++..++++. +|+.+|+++++++|+++.+++.+|.++..++++
T Consensus 313 ~~~~~~~~~nla~~~~~~g~~~----------~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~--------------- 367 (457)
T 1kt0_A 313 ESFLLAAFLNLAMCYLKLREYT----------KAVECCDKALGLDSANEKGLYRRGEAQLLMNEF--------------- 367 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred HHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHhcCCccHHHHHHHHHHHHHccCH---------------
Confidence 689999999999999999 899999999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHH-HHHHh
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY-LEMTK 219 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~-~~~al 219 (323)
++|+.+|+++++++|++ ..++..++.++..++++++|... |++.+
T Consensus 368 -----~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 368 -----ESAKGDFEKVLEVNPQN-KAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -----HHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -----HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 69999999999999999987754 44443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=103.38 Aligned_cols=121 Identities=12% Similarity=-0.033 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLET 121 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (323)
.|.++..++.+|.++...|+ +++|+.++++++.++|.++.++..+|.++...|++. +
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~-------------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~----------~ 61 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRK-------------YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE----------Q 61 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------H
T ss_pred ccccHHHHHHHHHHHHHhCc-------------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHH----------H
Confidence 56789999999999999885 467999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-----chhHHHH
Q psy11738 122 IKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL-----FYSQNVL 196 (323)
Q Consensus 122 a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~ 196 (323)
|+..+.++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|+ + ..+..
T Consensus 62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~a~~~~p~~~~~~~-~~~~~ 120 (137)
T 3q49_B 62 ALADCRRALELDGQSVKAHFFLGQCQLEMESY--------------------DEAIANLQRAYSLAKEQRLNFG-DDIPS 120 (137)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHTTCCCT-THHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHHhhH--------------------HHHHHHHHHHHHHChhHHHHHH-HHHHH
Confidence 99999999999999999999999999998765 9999999999999887 4 45566
Q ss_pred HHHHHHHHcC
Q psy11738 197 MLGKTYMRLE 206 (323)
Q Consensus 197 ~lg~~y~~~g 206 (323)
.+..+....+
T Consensus 121 ~l~~~~~~~~ 130 (137)
T 3q49_B 121 ALRIAKKKRW 130 (137)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665554443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=108.10 Aligned_cols=120 Identities=12% Similarity=0.036 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccC------------------CCCcHHHHHHHHHHHHHh
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQ------------------HEDHYAIHKWLAVILNEK 106 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~~~~ 106 (323)
.+..+...|..++..|+ +++|+..|.+++.+ +|.++.++.++|.++..+
T Consensus 10 ~a~~~~~~G~~~~~~~~-------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 76 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKD-------------YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI 76 (162)
T ss_dssp HHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667778888887774 56799999999998 677778888888888888
Q ss_pred hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q psy11738 107 ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 186 (323)
Q Consensus 107 ~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 186 (323)
|++. +|+..+.++++++|+++.+++.+|.++..+|++ ++|+.+|++++++
T Consensus 77 ~~~~----------~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~--------------------~~A~~~~~~al~l 126 (162)
T 3rkv_A 77 GDLH----------EAEETSSEVLKREETNEKALFRRAKARIAAWKL--------------------DEAEEDLKLLLRN 126 (162)
T ss_dssp TCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHH
T ss_pred CcHH----------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcH--------------------HHHHHHHHHHHhc
Confidence 8887 788888888888888888888888888887655 8888888888888
Q ss_pred CCCchhHHHHHHHHHHHHcCC
Q psy11738 187 HPLFYSQNVLMLGKTYMRLEN 207 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~g~ 207 (323)
+|++...+...++.+...+++
T Consensus 127 ~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 127 HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp CGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 888722556666666554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-13 Score=97.49 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=107.7
Q ss_pred CCCC-HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHH
Q psy11738 42 YKED-VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLE 120 (323)
Q Consensus 42 ~~~~-~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (323)
+|.. +..+..+|.++...|+ +++|+.+++++++.+|.++.++..+|.++...|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~---------- 60 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGD-------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD---------- 60 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------
T ss_pred CccccHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHH----------
Confidence 3444 7788899999988875 467999999999999999999999999999999998
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
+|+..+.+++.++|.++.++..+|.++...|++ ++|+.+|+++++++|++ +.++..+|.
T Consensus 61 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~l~~ 119 (125)
T 1na0_A 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY--------------------DEAIEYYQKALELDPNN-AEAKQNLGN 119 (125)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH--------------------HHHHHHHHHHHHhCCCc-HHHHHHHHH
Confidence 899999999999999999999999999998765 99999999999999998 699999999
Q ss_pred HHHHcC
Q psy11738 201 TYMRLE 206 (323)
Q Consensus 201 ~y~~~g 206 (323)
++...|
T Consensus 120 ~~~~~g 125 (125)
T 1na0_A 120 AKQKQG 125 (125)
T ss_dssp HHHHHC
T ss_pred HHHhcc
Confidence 987765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-12 Score=125.72 Aligned_cols=232 Identities=13% Similarity=0.091 Sum_probs=144.3
Q ss_pred hhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHH
Q psy11738 26 EEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNE 105 (323)
Q Consensus 26 ~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 105 (323)
..|++++|++++.++ +.+++|..+|.++...|+ +++|+..|.+| +++..+..+|.++..
T Consensus 1088 ~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~G~-------------~kEAIdsYiKA-----dD~say~eVa~~~~~ 1146 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGM-------------VKEAIDSYIKA-----DDPSSYMEVVQAANT 1146 (1630)
T ss_pred HHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCC-------------HHHHHHHHHhc-----CChHHHHHHHHHHHH
Confidence 568888888888874 567888899998888774 56688888775 677788888888888
Q ss_pred hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH-----------HHHHhhcCCCCCCHH
Q psy11738 106 KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK-----------IANAIFDTLPTSSYE 174 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 174 (323)
.|+++ +|+++|..|.+..|+. .+...+|.+|.+.+.+..+... ++..++ ..|+|+
T Consensus 1147 lGkyE----------EAIeyL~mArk~~~e~-~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le---~eg~Ye 1212 (1630)
T 1xi4_A 1147 SGNWE----------ELVKYLQMARKKARES-YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCY---DEKMYD 1212 (1630)
T ss_pred cCCHH----------HHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHH---hcCCHH
Confidence 88888 7788888888777442 2222366555555544322211 222222 357889
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh--------hhhcchhH--------
Q psy11738 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC--------FEITDMPW-------- 238 (323)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~-------- 238 (323)
+|+.+|.++ ..|..+|.+|.++|++++|++++++|....+ ....+ +.++..+.
T Consensus 1213 eA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~a--Wkev~~acve~~Ef~LA~~cgl~Iiv~~d 1281 (1630)
T 1xi4_A 1213 AAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRT--WKEVCFACVDGKEFRLAQMCGLHIVVHAD 1281 (1630)
T ss_pred HHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHH--HHHHHHHHhhhhHHHHHHHHHHhhhcCHH
Confidence 999999996 3488899999999999999999999944311 00000 01110000
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHH--HhcCHHHHHHHHHHhhCCCCh
Q psy11738 239 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM--RLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~--~~g~~~~A~~~~~~al~~~~~ 307 (323)
....+...+ ...|.|++|+..+++++.++|.. ...+..||.+|. +-++..++.+.|...+.++|-
T Consensus 1282 eLeeli~yY---e~~G~feEAI~LlE~aL~LeraH-~gmftELaiLyaKy~peklmEhlk~f~~rini~k~ 1348 (1630)
T 1xi4_A 1282 ELEELINYY---QDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV 1348 (1630)
T ss_pred HHHHHHHHH---HHcCCHHHHHHHHHHHhccChhH-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH
Confidence 000011111 12456666666666666666554 445555555554 345555666666666666553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-14 Score=130.84 Aligned_cols=125 Identities=10% Similarity=0.009 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.+++++|+.+++++++++|+++.++..+|.++..+|++. +|++.++++++++|+++.+++.+|.++..+|
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG----------YALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 456788999999999999999999999999999999999 8999999999999999999999999999987
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH--HHHcCCHHHHHHHHH-----------HH
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT--YMRLENYEQAAYYLE-----------MT 218 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~--y~~~g~~~~A~~~~~-----------~a 218 (323)
++ ++|+++|+++++++|++ ..++..++.+ +...|++++|++.++ ++
T Consensus 89 ~~--------------------~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~a 147 (477)
T 1wao_1 89 KF--------------------RAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIES 147 (477)
T ss_dssp CH--------------------HHHHHHHHHHHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSS
T ss_pred CH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhh
Confidence 65 99999999999999998 6889999998 899999999999999 88
Q ss_pred hCCCCCCch
Q psy11738 219 KNYPVKQDK 227 (323)
Q Consensus 219 l~~~~~~~~ 227 (323)
+.++|....
T Consensus 148 l~~~~~~~~ 156 (477)
T 1wao_1 148 MTIEDEYSG 156 (477)
T ss_dssp CCCCTTCCS
T ss_pred ccccccccc
Confidence 888877643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=101.73 Aligned_cols=100 Identities=14% Similarity=0.033 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHH
Q psy11738 48 IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMN 127 (323)
Q Consensus 48 ~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 127 (323)
.++.+|.++...|+ +++|+..++++++++|+++.+++.+|.++...|++. +|+..|+
T Consensus 19 ~~~~~g~~~~~~g~-------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~----------~A~~~~~ 75 (121)
T 1hxi_A 19 NPMEEGLSMLKLAN-------------LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG----------LAIIALN 75 (121)
T ss_dssp CHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH----------HHHHHHH
T ss_pred hHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH----------HHHHHHH
Confidence 46778888888774 577999999999999999999999999999999998 8999999
Q ss_pred HHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 128 KAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 128 ~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
++++++|+++.+++.+|.++...|++ ++|+..|+++++++|++
T Consensus 76 ~al~l~P~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 76 HARMLDPKDIAVHAALAVSHTNEHNA--------------------NAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHC-----
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCcCC
Confidence 99999999999999999999998766 99999999999999986
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=95.86 Aligned_cols=105 Identities=11% Similarity=0.017 Sum_probs=97.9
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
.+..+..+|.++...|++. +|+..|++++..+|+++.++..+|.++...|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------------------ 54 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNID----------DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY------------------ 54 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH------------------
T ss_pred hHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH------------------
Confidence 5677889999999999998 899999999999999999999999999998765
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|+++++++|++ +.++..+|.++...|++++|+.++++++..+|.+..
T Consensus 55 --~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 55 --QKAYEDGCKTVDLKPDW-GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp --HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred --HHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999998 699999999999999999999999999999998754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=107.11 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=96.3
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc------------------CCCChhHHHHHhhHHHHhcCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL------------------KPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l------------------~p~~~~~~~~lg~~~~~~~~~ 153 (323)
.+..+...|..+...|++. +|+.+|.+++.+ +|.+..++.++|.++..+|++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~----------~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~ 79 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYK----------EAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL 79 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 4667788999999999998 899999999999 777778999999999998765
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+.++.++++++|++ +.+++.+|.+|..+|++++|+.+|++++.++|.+.
T Consensus 80 --------------------~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 80 --------------------HEAEETSSEVLKREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp --------------------HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred --------------------HHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 99999999999999998 79999999999999999999999999999999876
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-13 Score=96.32 Aligned_cols=114 Identities=15% Similarity=0.014 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
.++.++.+|.++...|+ +++|+.++++++..+|.++.++..+|.++...|++. +|..
T Consensus 3 ~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~ 59 (118)
T 1elw_A 3 QVNELKEKGNKALSVGN-------------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQ----------KAYE 59 (118)
T ss_dssp HHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHHH
T ss_pred hHHHHHHHHHHHHHccc-------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHH----------HHHH
Confidence 46778889999988775 567999999999999999999999999999999998 8999
Q ss_pred HHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q psy11738 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTY 202 (323)
Q Consensus 125 ~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y 202 (323)
.+.++++++|+++.+++.+|.++...|++ ++|+.+|+++++++|++ +.++..++.+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 116 (118)
T 1elw_A 60 DGCKTVDLKPDWGKGYSRKAAALEFLNRF--------------------EEAKRTYEEGLKHEANN-PQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHTTCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHhhH--------------------HHHHHHHHHHHHcCCCC-HHHHHHHHHhh
Confidence 99999999999999999999999998765 99999999999999998 68888888764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-12 Score=95.56 Aligned_cols=100 Identities=20% Similarity=0.331 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
+.++..+|.++...|++. +|++.|.++++.+|+++.++..+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~------------------- 59 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYD----------EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY------------------- 59 (125)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-------------------
T ss_pred HHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH-------------------
Confidence 344444555555555444 444555555555555555555555555444333
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCC
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPV 223 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 223 (323)
++|+.+|+++++++|++ +.++..+|.+|...|++++|+.++++++..+|
T Consensus 60 -~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 60 -DEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp -HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -HHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 55555555555555544 34455555555555554444444444444333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-13 Score=101.48 Aligned_cols=113 Identities=10% Similarity=-0.026 Sum_probs=104.1
Q ss_pred hhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHH
Q psy11738 84 NALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKI 160 (323)
Q Consensus 84 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~ 160 (323)
++...+|.++..++.+|..+...|++. +|+.+|+++++++|++ ..++..+|.++...+++
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~------- 81 (148)
T 2dba_A 19 RPATPGASSVEQLRKEGNELFKCGDYG----------GALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY------- 81 (148)
T ss_dssp CCCCTTCCCHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH-------
T ss_pred cCCccchHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH-------
Confidence 345677889999999999999999999 8999999999999998 89999999999988765
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 161 ANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.+|+++++++|++ +.+++.+|.+|..+|++++|+.+|++++.++|.+..
T Consensus 82 -------------~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 82 -------------DKAETEASKAIEKDGGD-VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp -------------HHHHHHHHHHHHHTSCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred -------------HHHHHHHHHHHhhCccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 99999999999999998 699999999999999999999999999999998754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=97.70 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=80.9
Q ss_pred cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 132 LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 132 l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
++|+++.+++.+|.+++..|++ ++|+.+|+++++++|++ ..+++.+|.++...|++++|
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~-~~~~~~~a~~~~~~~~~~~A 59 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNY--------------------TESIDLFEKAIQLDPEE-SKYWLMKGKALYNLERYEEA 59 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCH--------------------HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhH--------------------HHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHccCHHHH
Confidence 4678888888888888776654 88888888888888886 57888888888888888877
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHh-cC
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL-EN 290 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~-g~ 290 (323)
+.+++++++.+|... . ..+++.+|.+|..+ |+
T Consensus 60 ~~~~~~a~~~~~~~~----------------------------------------------~-~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 60 VDCYNYVINVIEDEY----------------------------------------------N-KDVWAAKADALRYIEGK 92 (112)
T ss_dssp HHHHHHHHHTSCCTT----------------------------------------------C-HHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHhCcccc----------------------------------------------h-HHHHHHHHHHHHHHhCC
Confidence 777777766544300 3 45667777777777 77
Q ss_pred HHHHHHHHHHhhCCCCh
Q psy11738 291 YEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 291 ~~~A~~~~~~al~~~~~ 307 (323)
+++|+.++++++...|.
T Consensus 93 ~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 93 EVEAEIAEARAKLEHHH 109 (112)
T ss_dssp SHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHhhcccC
Confidence 77777777777777664
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-14 Score=132.25 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=45.8
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
+|+++|+++++++|+++.++..+|.++...|++ ++|+.+|+++++++|++ +.+++++|.
T Consensus 24 ~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~l~p~~-~~~~~~lg~ 82 (477)
T 1wao_1 24 NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY--------------------GYALGDATRAIELDKKY-IKGYYRRAA 82 (477)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHSCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence 555555555555555555555555555555433 55555555555555554 455555555
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCC
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPV 223 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~ 223 (323)
+|..+|++++|+.+|+++++++|
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 55555555555555555544433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=108.84 Aligned_cols=156 Identities=11% Similarity=0.041 Sum_probs=121.0
Q ss_pred HHhhccHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc------CCCCcHHH
Q psy11738 24 LFEEQQFEEVNKMLESS-EYK-EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP------QHEDHYAI 95 (323)
Q Consensus 24 ~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~ 95 (323)
++..|++++|...++.+ .+| ..+.++..+|.+|...|++ ++|+.++++++. ..|..+.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRF-------------DEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcH-------------HHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 46789999999933332 244 6788999999999998854 557777777777 56777888
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc---CCCC----hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL---KPDD----STTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l---~p~~----~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+..+|.++...|++. +|.+++.+++.+ .|++ ..++..+|.++...|++
T Consensus 69 ~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--------------- 123 (203)
T 3gw4_A 69 LHQVGMVERMAGNWD----------AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL--------------- 123 (203)
T ss_dssp HHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH---------------
T ss_pred HHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH---------------
Confidence 999999999999998 888899999988 4433 45688899999988766
Q ss_pred CCCCHHHHHHHHHHHHhcCCC--c---hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 169 PTSSYEEALKYFLEAEKQHPL--F---YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~--~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
++|+.++++++++.+. + ...++..+|.++...|++++|+.++++++.+.
T Consensus 124 -----~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 124 -----AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 9999999999976321 1 12457899999999999999999999998863
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=101.58 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=96.3
Q ss_pred CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
..+..++.+|.+++..|++ ++|+.+|+++++.+|++ +.+++.+|.+|...|++++|+.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~ 60 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDF--------------------DTALKHYDKAKELDPTN-MTYITNQAAVYFEKGDYNKCREL 60 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCH--------------------HHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHhccHHHHHHH
Confidence 3456788899888887655 99999999999999997 68899999999999999999999
Q ss_pred HHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHH
Q psy11738 215 LEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294 (323)
Q Consensus 215 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A 294 (323)
+++++...|.+... .+.. ..+++.+|.+|...|++++|
T Consensus 61 ~~~~~~~~~~~~~~-----------------------------------------~~~~-~~~~~~la~~~~~~~~~~~A 98 (131)
T 1elr_A 61 CEKAIEVGRENRED-----------------------------------------YRQI-AKAYARIGNSYFKEEKYKDA 98 (131)
T ss_dssp HHHHHHHHHHSTTC-----------------------------------------HHHH-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhccccchh-----------------------------------------HHHH-HHHHHHHHHHHHHhccHHHH
Confidence 99988765433111 0011 35677888888888888888
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 295 AYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 295 ~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
+.+|+++++++|+.+....+..+...+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 99 IHFYNKSLAEHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 888888888887766666666665554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-11 Score=121.91 Aligned_cols=196 Identities=16% Similarity=0.114 Sum_probs=146.5
Q ss_pred hhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHH
Q psy11738 21 SDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKY-NLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWL 99 (323)
Q Consensus 21 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 99 (323)
|..+...|.|++|+.+|++...... + ..++. . .+++++|+++++++ +.+.+|+.+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~--A----~~VLie~-------------i~nldrAiE~Aerv-----n~p~vWsqL 1111 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTS--A----VQVLIEH-------------IGNLDRAYEFAERC-----NEPAVWSQL 1111 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHH--H----HHHHHHH-------------HhhHHHHHHHHHhc-----CCHHHHHHH
Confidence 8888889999999999999742222 1 11221 3 34678899999875 568899999
Q ss_pred HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHH
Q psy11738 100 AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKY 179 (323)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (323)
|.++...|++. +|++.|.+| +++..+..+|.++...|++ ++|+++
T Consensus 1112 AKAql~~G~~k----------EAIdsYiKA-----dD~say~eVa~~~~~lGky--------------------EEAIey 1156 (1630)
T 1xi4_A 1112 AKAQLQKGMVK----------EAIDSYIKA-----DDPSSYMEVVQAANTSGNW--------------------EELVKY 1156 (1630)
T ss_pred HHHHHhCCCHH----------HHHHHHHhc-----CChHHHHHHHHHHHHcCCH--------------------HHHHHH
Confidence 99999999999 899999776 8899999999999888755 999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHH
Q psy11738 180 FLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEA 259 (323)
Q Consensus 180 ~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~A 259 (323)
|..|.+..++. .+...+|.+|.+++++++ ++.|-. .++. .. +. .++..++. .|+|++|
T Consensus 1157 L~mArk~~~e~--~Idt~LafaYAKl~rlee-le~fI~----~~n~-ad---------~~--~iGd~le~---eg~YeeA 1214 (1630)
T 1xi4_A 1157 LQMARKKARES--YVETELIFALAKTNRLAE-LEEFIN----GPNN-AH---------IQ--QVGDRCYD---EKMYDAA 1214 (1630)
T ss_pred HHHHHhhcccc--cccHHHHHHHHhhcCHHH-HHHHHh----CCCH-HH---------HH--HHHHHHHh---cCCHHHH
Confidence 99999988663 344468999999999885 444421 2221 11 11 23344443 6889999
Q ss_pred HHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 260 LKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 260 l~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
+.+|.++ ..|..+|.+|.++|++++|++++++|....+
T Consensus 1215 ~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~a 1252 (1630)
T 1xi4_A 1215 KLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRT 1252 (1630)
T ss_pred HHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHH
Confidence 9999875 2478899999999999999999999855543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-12 Score=99.05 Aligned_cols=117 Identities=14% Similarity=0.029 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc---HHHHHHHHHHHHHhhcccchHHHHHh
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH---YAIHKWLAVILNEKATLEGTKARIQQ 118 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (323)
.|.++..++.+|.++...|+ +++|+.+++++++++|++ +.++..+|.++...+++.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~-------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------- 82 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGD-------------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD-------- 82 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTC-------------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHH--------
T ss_pred chHHHHHHHHHHHHHHHhCC-------------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHH--------
Confidence 57889999999999998885 467999999999999998 899999999999999998
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
+|+..++++++++|+++.+++.+|.++...+++ ++|+.+|+++++++|++ ..++..+
T Consensus 83 --~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------------------~~A~~~~~~al~~~p~~-~~~~~~l 139 (148)
T 2dba_A 83 --KAETEASKAIEKDGGDVKALYRRSQALEKLGRL--------------------DQAVLDLQRCVSLEPKN-KVFQEAL 139 (148)
T ss_dssp --HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHCSSC-HHHHHHH
T ss_pred --HHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcCCCc-HHHHHHH
Confidence 899999999999999999999999999998765 99999999999999998 5777777
Q ss_pred HHHH
Q psy11738 199 GKTY 202 (323)
Q Consensus 199 g~~y 202 (323)
+.+.
T Consensus 140 ~~~~ 143 (148)
T 2dba_A 140 RNIS 143 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=123.83 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.|++++|+.+++.+.+..|+ +.+...++.+|..+|++. ++.+++. .| +..+|..+|..|+..|
T Consensus 74 ~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~----------e~e~f~~-----~p-n~~a~~~IGd~~~~~g 136 (449)
T 1b89_A 74 SGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLA----------ELEEFIN-----GP-NNAHIQQVGDRCYDEK 136 (449)
T ss_dssp ------------------------------------CHH----------HHTTTTT-----CC-----------------
T ss_pred CCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHH----------HHHHHHc-----CC-cHHHHHHHHHHHHHcC
Confidence 44567788888888775443 666677778888888777 4433332 24 3358888888888877
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 231 (323)
.+ ++|+.+|.++ ..+..+|.|+.++|++++|++.++++. +| ..
T Consensus 137 ~y--------------------eeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~---~~--- 179 (449)
T 1b89_A 137 MY--------------------DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--ST---RT--- 179 (449)
T ss_dssp CT--------------------TTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH---HH---
T ss_pred CH--------------------HHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc---hh---
Confidence 66 8888888765 236678888888888888888888872 11 11
Q ss_pred hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 232 ~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
| +....+.. ..|+|+.|..+... +..+|+. ...+..+|...|++++|+.++++++.+++.
T Consensus 180 ------W--k~v~~aCv---~~~ef~lA~~~~l~-L~~~ad~----l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 180 ------W--KEVCFACV---DGKEFRLAQMCGLH-IVVHADE----LEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp ------H--HHHHHHHH---HTTCHHHHHHTTTT-TTTCHHH----HHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred ------H--HHHHHHHH---HcCcHHHHHHHHHH-HHhCHhh----HHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 1 01111111 14566666555554 3345443 234566666666666666666666666543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-13 Score=119.68 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=89.4
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh-----------------hHHHHHhhHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS-----------------TTLFMLGMWCFE 149 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~-----------------~~~~~lg~~~~~ 149 (323)
+..|..+..+..+|..+...+++. +|+.+|.+++.+.|++. .++.++|.++..
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~ 242 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLE----------EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCH----------HHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556778889999999999999 89999999999999987 378888888888
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhh
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 229 (323)
++++ ++|+.+|+++++++|++ ..+++++|.+|..+|++++|+.+|++++.++|.+....
T Consensus 243 ~g~~--------------------~~A~~~~~~al~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~ 301 (338)
T 2if4_A 243 LKRY--------------------DEAIGHCNIVLTEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301 (338)
T ss_dssp TTCC--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred cCCH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 7766 99999999999999987 68899999999999999999999999988888765432
Q ss_pred hhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 230 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
. .+..+ .....+..+++...|.+++...|++
T Consensus 302 ~-~L~~l------------~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 302 R-ELRAL------------AEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp --------------------------------------------
T ss_pred H-HHHHH------------HHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 2 11000 0011344556666677777666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=97.35 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
++++.+|.++...|++. +|+..|.++++.+|+++ .+++.+|.+++..|++
T Consensus 3 ~~~~~~a~~~~~~~~~~----------~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~----------------- 55 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYD----------DASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF----------------- 55 (129)
T ss_dssp CCHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH-----------------
T ss_pred HHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH-----------------
Confidence 45788999999999998 89999999999999999 7999999999998765
Q ss_pred CCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 171 SSYEEALKYFLEAEKQHPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+..|+++++.+|++. +.+++.+|.+|..+|++++|+.+|++++...|++..
T Consensus 56 ---~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 56 ---QLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp ---HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred ---HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 999999999999999962 477999999999999999999999999999988754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-13 Score=121.49 Aligned_cols=123 Identities=16% Similarity=0.051 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhccCCCCcH-----------------HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC
Q psy11738 74 LILSAYFLVYNALPQHEDHY-----------------AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD 136 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~ 136 (323)
++++|+.+|++++.+.|.+. .++.++|.++..++++. +|+.+|.++++++|++
T Consensus 194 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~----------~A~~~~~~al~~~p~~ 263 (338)
T 2if4_A 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD----------EAIGHCNIVLTEEEKN 263 (338)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH----------HHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCC
Confidence 55779999999999999887 48999999999999999 8999999999999999
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH-HHHcCCHHHHHHHH
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT-YMRLENYEQAAYYL 215 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~-y~~~g~~~~A~~~~ 215 (323)
..+++.+|.++..+|++ ++|+.+|+++++++|++ ..++..|+.+ ....+..+++...|
T Consensus 264 ~~a~~~lg~a~~~~g~~--------------------~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 264 PKALFRRGKAKAELGQM--------------------DSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp HHHHHHHHHHHHTTTCH--------------------HHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988765 99999999999999998 6999999988 45667788899999
Q ss_pred HHHhCCCCCCch
Q psy11738 216 EMTKNYPVKQDK 227 (323)
Q Consensus 216 ~~al~~~~~~~~ 227 (323)
.+++...|.+..
T Consensus 323 ~~~l~~~p~~~~ 334 (338)
T 2if4_A 323 KGIFKGKDEGGA 334 (338)
T ss_dssp ------------
T ss_pred HHhhCCCCCCCC
Confidence 999999888753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-13 Score=100.23 Aligned_cols=88 Identities=10% Similarity=0.069 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhccC---CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHH
Q psy11738 73 QLILSAYFLVYNALPQ---HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFE 149 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~ 149 (323)
+++++|+.++++++++ +|+++.++..+|.++..+|++. +|+.+|+++++++|+++.+++.+|.++..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYR----------KAEAVLANGVKQFPNHQALRVFYAMVLYN 73 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4555677777777777 5777777777777777777777 77777777777777777777777777777
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
.|++ ++|+..|+++++..|++
T Consensus 74 ~g~~--------------------~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 74 LGRY--------------------EQGVELLLKIIAETSDD 94 (117)
T ss_dssp HTCH--------------------HHHHHHHHHHHHHHCCC
T ss_pred cCCH--------------------HHHHHHHHHHHHhCCCc
Confidence 7654 77777777777777776
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=9e-13 Score=117.83 Aligned_cols=125 Identities=15% Similarity=0.025 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCC
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPT 253 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 253 (323)
+.|..+... +..+|++ ...+..+|.+.|++++|+.++++++.+++.+... |....++++-+ ..
T Consensus 194 ~lA~~~~l~-L~~~ad~----l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~---------ftel~il~~ky---~p 256 (449)
T 1b89_A 194 RLAQMCGLH-IVVHADE----LEELINYYQDRGYFEELITMLEAALGLERAHMGM---------FTELAILYSKF---KP 256 (449)
T ss_dssp HHHHHTTTT-TTTCHHH----HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH---------HHHHHHHHHTT---CH
T ss_pred HHHHHHHHH-HHhCHhh----HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHH---------HHHHHHHHHhc---CH
Confidence 666555554 2344443 3357789999999999999999999998766432 12222333322 25
Q ss_pred CcHHHHHHHHHHHHhhCC-----cchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CChhHHHHHHHH
Q psy11738 254 SSYEEALKYFLEAEKQHP-----LFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAVQEATKLLEK 316 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p-----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~~~~~l~~ 316 (323)
++..+.++.|...+.+.| +. ...|..+.-+|..-++++.|+......... -.++.+++++.+
T Consensus 257 ~k~~ehl~~~~~~ini~k~~~~~~~-~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~k 324 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPKVLRAAEQ-AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK 324 (449)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHT-TTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHH-HHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhc
Confidence 788899999988888888 66 688999999999999999999987665322 334555555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=114.28 Aligned_cols=124 Identities=10% Similarity=0.004 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc----------------CCCCcHHHHHHHHHHHHHhhccc
Q psy11738 47 EIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP----------------QHEDHYAIHKWLAVILNEKATLE 110 (323)
Q Consensus 47 ~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~~~~~~~~~~~~ 110 (323)
..+..+|.++...| ++++|+..|+++++ ++|.++.++.++|.++..++++.
T Consensus 224 ~~~~~~g~~~~~~g-------------~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~ 290 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQ-------------NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQ 290 (370)
T ss_dssp HHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhc-------------CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 34555666666655 45778999998888 88888999999999999999998
Q ss_pred chHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 111 GTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
+|+.+++++++++|+++.+++.+|.++..++++ ++|+.+|+++++++|++
T Consensus 291 ----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~--------------------~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 291 ----------GAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY--------------------DQALADLKKAQEIAPED 340 (370)
T ss_dssp ----------HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC
T ss_pred ----------HHHHHHHHHHHhCchhHHHHHHHHHHHHHccCH--------------------HHHHHHHHHHHHhCCCC
Confidence 899999999999999999999999999988755 99999999999999997
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 191 YSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 191 ~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
..++..++.++..+++++++...
T Consensus 341 -~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 341 -KAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999988877653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-13 Score=99.32 Aligned_cols=86 Identities=17% Similarity=0.107 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcc---CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHH
Q psy11738 121 TIKHHMNKAIEL---KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 197 (323)
Q Consensus 121 ~a~~~~~~al~l---~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 197 (323)
+|+.+|++++++ +|+++.+++.+|.++...|++ ++|+.+|+++++++|++ +.++++
T Consensus 8 ~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~--------------------~~A~~~~~~al~~~p~~-~~~~~~ 66 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY--------------------RKAEAVLANGVKQFPNH-QALRVF 66 (117)
T ss_dssp CCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCCCc-hHHHHH
Confidence 788999999999 699999999999999998765 99999999999999998 799999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
+|.+|..+|++++|+.++++++...|.+..
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 999999999999999999999999888754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-12 Score=93.94 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH---HHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 48 IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY---AIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 48 ~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
.++.+|.++...|+ +++|+..++++++.+|+++ .+++.+|.++...|++. +|+.
T Consensus 4 ~~~~~a~~~~~~~~-------------~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~----------~A~~ 60 (129)
T 2xev_A 4 TAYNVAFDALKNGK-------------YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQ----------LAEA 60 (129)
T ss_dssp CHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHH----------HHHH
T ss_pred HHHHHHHHHHHhCC-------------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHH----------HHHH
Confidence 46778888888774 5779999999999999998 79999999999999999 8999
Q ss_pred HHHHHHccCCCC---hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q psy11738 125 HMNKAIELKPDD---STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKT 201 (323)
Q Consensus 125 ~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~ 201 (323)
.|+++++.+|++ +.+++.+|.++...|++ ++|+..|+++++..|++ +.+...+..+
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~~~~~~p~~-~~~~~a~~~l 119 (129)
T 2xev_A 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN--------------------TEAQQTLQQVATQYPGS-DAARVAQERL 119 (129)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTS-HHHHHHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHHCCCC-hHHHHHHHHH
Confidence 999999999999 88899999999998765 99999999999999997 4655544444
Q ss_pred H
Q psy11738 202 Y 202 (323)
Q Consensus 202 y 202 (323)
-
T Consensus 120 ~ 120 (129)
T 2xev_A 120 Q 120 (129)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=96.25 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHH
Q psy11738 44 EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIK 123 (323)
Q Consensus 44 ~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 123 (323)
..++.++.+|.++...|+ +++|+.++++++..+|.++.++..+|.++...|++. +|.
T Consensus 2 ~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~----------~A~ 58 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKD-------------FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYN----------KCR 58 (131)
T ss_dssp HHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------HHH
T ss_pred hHHHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHH----------HHH
Confidence 346778889999988775 467999999999999999999999999999999998 899
Q ss_pred HHHHHHHccCCCC-------hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHH
Q psy11738 124 HHMNKAIELKPDD-------STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 196 (323)
Q Consensus 124 ~~~~~al~l~p~~-------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 196 (323)
.++.+++.+.|++ +.+++.+|.++...|++ ++|+.+|++++++.|+ +....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~~~~~~~~--~~~~~ 116 (131)
T 1elr_A 59 ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY--------------------KDAIHFYNKSLAEHRT--PDVLK 116 (131)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCCC--HHHHH
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH--------------------HHHHHHHHHHHHhCCC--HHHHH
Confidence 9999999999887 88999999999988765 9999999999999995 47888
Q ss_pred HHHHHHHHcCC
Q psy11738 197 MLGKTYMRLEN 207 (323)
Q Consensus 197 ~lg~~y~~~g~ 207 (323)
.++.+...+++
T Consensus 117 ~l~~~~~~~~~ 127 (131)
T 1elr_A 117 KCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887765543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=117.31 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=121.5
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHhC--CCCCC-----------------HHHHHHHHHHHHHhcccCCCCcHHHHHHHHH
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLESS--EYKED-----------------VEIIWRLVRVKYNLATHSSSLSDADKKQLIL 76 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~-----------------~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~ 76 (323)
..+.+|..++..|+|++|+..+..+ ..|.. ..++..+|.+|...|+ ++
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~-------------~~ 72 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA-------------KD 72 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC-------------HH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-------------HH
Confidence 4688999999999999999999876 23332 2357788999988885 46
Q ss_pred HHHHHHHhhccCCCCcHHH------HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC------CChhHHHHHh
Q psy11738 77 SAYFLVYNALPQHEDHYAI------HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKP------DDSTTLFMLG 144 (323)
Q Consensus 77 ~A~~~~~~al~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p------~~~~~~~~lg 144 (323)
+|+.++.+++...+....+ ...+|.++...|++. +++.++.+++...+ .-..++..+|
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~la 142 (434)
T 4b4t_Q 73 KLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLD----------DQIFVCEKSIEFAKREKRVFLKHSLSIKLA 142 (434)
T ss_dssp HHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHH----------HHHHHHHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHH----------HHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 6888888888776654443 233444444445554 67777777776543 2356788899
Q ss_pred hHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 145 MWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
.++...|++ .+|+..+++++.. .|. ...++..+|.+|...|++++|..+++++
T Consensus 143 ~~~~~~g~~--------------------~~A~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 143 TLHYQKKQY--------------------KDSLALINDLLREFKKLDDKPS-LVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp HHHHHHTCH--------------------HHHHHHHHHHHHHHTTSSCSTH-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCh--------------------HHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 999998765 9999999998875 222 2478999999999999999999999999
Q ss_pred hCCC
Q psy11738 219 KNYP 222 (323)
Q Consensus 219 l~~~ 222 (323)
+.+.
T Consensus 202 l~~~ 205 (434)
T 4b4t_Q 202 RTAA 205 (434)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-12 Score=98.83 Aligned_cols=141 Identities=17% Similarity=0.140 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh------hHHHHHhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS------TTLFMLGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~------~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
.+.++..+|.++...|++. +|+.++.+++++.|... .++..+|.++...|++
T Consensus 8 ~~~~~~~l~~~~~~~~~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------------ 65 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFR----------DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF------------ 65 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH------------
T ss_pred HHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH------------
Confidence 3456778888888888887 78888888888766533 3677888888877655
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHH
Q psy11738 166 DTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQ 240 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 240 (323)
++|+.+|++++++.+.. ...++..+|.++...|++++|+.++++++.+.+...
T Consensus 66 --------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------- 123 (164)
T 3ro3_A 66 --------ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-------------- 123 (164)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------------
T ss_pred --------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--------------
Confidence 88999999988874331 135688889999999999999998888866411100
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 241 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
++.....++..+|.+|...|++++|+.++++++++.
T Consensus 124 -----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 124 -----------------------------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 111114668899999999999999999999998764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=102.01 Aligned_cols=177 Identities=11% Similarity=0.047 Sum_probs=131.3
Q ss_pred HHHHHhC--CCCCCHHHHHHHHHHHHHhcccCC-CC--------------cHHHHHHHHHHHHHHHHhhc----------
Q psy11738 34 NKMLESS--EYKEDVEIIWRLVRVKYNLATHSS-SL--------------SDADKKQLILSAYFLVYNAL---------- 86 (323)
Q Consensus 34 ~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~-~~--------------~~~~~~~~~~~A~~~~~~al---------- 86 (323)
+.+++.+ .+|++...+...|..|..-+.... .. ...+....|..|..+..+++
T Consensus 52 Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~ 131 (301)
T 3u64_A 52 LKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFTRE 131 (301)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 3444544 599999999998888877655211 00 01133445555555555444
Q ss_pred --------------cCCCCcHHHHHHHHHHHHHhhcc-cchHHHHHhHHHHHHHHHHHHccCCC--ChhHHHHHhhHHHH
Q psy11738 87 --------------PQHEDHYAIHKWLAVILNEKATL-EGTKARIQQLETIKHHMNKAIELKPD--DSTTLFMLGMWCFE 149 (323)
Q Consensus 87 --------------~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~al~l~p~--~~~~~~~lg~~~~~ 149 (323)
+.+|+++++++|.|++....-.. .+....+....+++..++++++++|+ +..+|..+|.+|..
T Consensus 132 ~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 132 VFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp HTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh
Confidence 34577799999999998764333 23333455666889999999999999 78899999999988
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-cCCHHHHHHHHHHHhCCCCCC
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR-LENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~ 225 (323)
.... ..|+.++|..+|++|++++|+....+++.+|..+.. +|++++|..++++++..+|..
T Consensus 212 vPp~---------------~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 212 APES---------------FGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp SCTT---------------TTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCCc---------------cCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 6321 125569999999999999997436999999999988 599999999999999999885
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=109.41 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc----------------cCCCChhHHHHHhhHHHHhcCCcHH
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE----------------LKPDDSTTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~----------------l~p~~~~~~~~lg~~~~~~~~~~~~ 156 (323)
+..+..+|..+...+++. +|+..|.++++ ++|.+..++.++|.+++.++++
T Consensus 223 a~~~~~~g~~~~~~g~~~----------~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~--- 289 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWE----------MAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW--- 289 (370)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCH---
Confidence 445778899999999988 88889999998 5555566666666666655433
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
++|+.+|+++++++|++ +.+++.+|.+|..+|++++|+.+|+++++++|.
T Consensus 290 -----------------~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 290 -----------------QGAVDSCLEALEIDPSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp -----------------HHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----------------HHHHHHHHHHHHhCchh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 66666666666666665 466666666666666666555555555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.7e-12 Score=96.76 Aligned_cols=134 Identities=19% Similarity=0.113 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH------HHHHHHHHHHHHhhcccchHHHHHhH
Q psy11738 46 VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY------AIHKWLAVILNEKATLEGTKARIQQL 119 (323)
Q Consensus 46 ~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (323)
+.++..+|.+|...|+ +++|+.++++++++.|... .++..+|.++...|++.
T Consensus 9 ~~~~~~l~~~~~~~~~-------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------- 66 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN-------------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFE--------- 66 (164)
T ss_dssp HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH---------
T ss_pred HHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHH---------
Confidence 4567778888887774 4668888888888766544 37888999999999998
Q ss_pred HHHHHHHHHHHccCCCC------hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC----
Q psy11738 120 ETIKHHMNKAIELKPDD------STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL---- 189 (323)
Q Consensus 120 ~~a~~~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---- 189 (323)
+|.+++++++++.+.. ..++..+|.++...|++ ++|+.++++++++.+.
T Consensus 67 -~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 67 -TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY--------------------EKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHTTCH
T ss_pred -HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHccch
Confidence 8888999999886653 55788899998888755 9999999999987321
Q ss_pred -chhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 190 -FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 190 -~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
....++..+|.+|...|++++|+.++++++.+.
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 123678999999999999999999999998763
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-12 Score=106.87 Aligned_cols=172 Identities=12% Similarity=0.027 Sum_probs=136.1
Q ss_pred chhhhHHHHHHh-------hhHHHhhccHHHHHHHHHhC-C-CCCC---------------------HHHHHHHHHHHHH
Q psy11738 9 TVSKVSEEFLKK-------SDDLFEEQQFEEVNKMLESS-E-YKED---------------------VEIIWRLVRVKYN 58 (323)
Q Consensus 9 ~~~~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~-~-~~~~---------------------~~~~~~la~~y~~ 58 (323)
..|......+.. +..+...+++.+++..+.+. . .|.. .++...++.++..
T Consensus 35 ~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~ 114 (282)
T 4f3v_A 35 YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAA 114 (282)
T ss_dssp HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHH
T ss_pred hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHH
Confidence 344555555555 66777777777777777664 2 2322 3444556777777
Q ss_pred hcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC-C-
Q psy11738 59 LATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD-D- 136 (323)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~-~- 136 (323)
.| ++++|...+..++...|.+. +++.+|.++...+++. +++.+|.++....+. .
T Consensus 115 ~g-------------~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~----------dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 115 QG-------------NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWT----------DVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp HT-------------CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHH----------HHHHHHTTGGGCSCHHHH
T ss_pred CC-------------CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHH----------HHHHHHHHhhccCCcccH
Confidence 66 56789999999999999999 9999999999999999 888899988776422 1
Q ss_pred hhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHcCCHHHHHHH
Q psy11738 137 STTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH--PLFYSQNVLMLGKTYMRLENYEQAAYY 214 (323)
Q Consensus 137 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~y~~~g~~~~A~~~ 214 (323)
..+++++|.++..+|++ ++|+.+|++++... |...+.+++++|.|+..+|+.++|...
T Consensus 171 ~~a~~~LG~al~~LG~~--------------------~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALF--------------------TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35899999999998765 99999999999654 653357899999999999999999999
Q ss_pred HHHHhCCCCC
Q psy11738 215 LEMTKNYPVK 224 (323)
Q Consensus 215 ~~~al~~~~~ 224 (323)
|++++..+|.
T Consensus 231 l~~a~a~~P~ 240 (282)
T 4f3v_A 231 LEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHhcCCc
Confidence 9999999998
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=89.33 Aligned_cols=84 Identities=20% Similarity=0.152 Sum_probs=77.9
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
.+++.|+++++.+|+++.+++.+|.++...|++ ++|+.+|+++++++|++ ..+++.+|.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~~~~~la~ 61 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQF--------------------DAALPHLRAALDFDPTY-SVAWKWLGK 61 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH--------------------HHHHHHHHHHHHHCCCc-HHHHHHHHH
Confidence 467789999999999999999999999998765 99999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
+|...|++++|+.+|++++.++|..
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 62 TLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999987654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-10 Score=100.43 Aligned_cols=152 Identities=10% Similarity=-0.050 Sum_probs=114.5
Q ss_pred CCCCHHHHH--HHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccc-hHHHHHh
Q psy11738 42 YKEDVEIIW--RLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEG-TKARIQQ 118 (323)
Q Consensus 42 ~~~~~~~~~--~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 118 (323)
.|.+.+++- ..|..+...++ .+.+.+|+.+|++|++++|+++.++..++.++........ ....+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~----------~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~ 259 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGD----------DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAA 259 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHH
Confidence 455555543 34555544432 3467889999999999999999999999988875433321 1122222
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
...+.+ -..++..+|.++.++..++..+...|++ ++|+.++++|+.++|+ ..++..+
T Consensus 260 l~~a~~-a~~a~~~~~~~a~~~~alal~~l~~gd~--------------------d~A~~~l~rAl~Ln~s--~~a~~ll 316 (372)
T 3ly7_A 260 LNTEID-NIVTLPELNNLSIIYQIKAVSALVKGKT--------------------DESYQAINTGIDLEMS--WLNYVLL 316 (372)
T ss_dssp HHHHHH-HHHTCGGGTTCHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHCCC--HHHHHHH
T ss_pred HHHHHH-HHHhcccCCcCHHHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHhcCCC--HHHHHHH
Confidence 223333 1245678899999999999888777765 9999999999999986 3788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
|.++...|++++|++.|++|+.++|...
T Consensus 317 G~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 317 GKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 9999999999999999999999999764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.21 E-value=8e-11 Score=86.21 Aligned_cols=101 Identities=18% Similarity=0.068 Sum_probs=86.4
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHH
Q psy11738 77 SAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWY 156 (323)
Q Consensus 77 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~ 156 (323)
+|+..++++++.+|+++.+++.+|.++...|++. +|+..|+++++++|+++.+++.+|.++...|++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--- 69 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFD----------AALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR--- 69 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH---
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH---
Confidence 4899999999999999999999999999999999 899999999999999999999999999998766
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHcCC
Q psy11738 157 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLEN 207 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~lg~~y~~~g~ 207 (323)
++|+.+|++++++.|+.. ......+...+..+++
T Consensus 70 -----------------~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 70 -----------------AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 999999999999987531 2344455554444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.7e-12 Score=90.63 Aligned_cols=96 Identities=9% Similarity=0.051 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++.++..+|.++...|++. +|++.|+++++++|+++.+++.+|.++...|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~------------------ 54 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYR----------EAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY------------------ 54 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH------------------
T ss_pred hHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH------------------
Confidence 5678899999999999999 899999999999999999999999999998765
Q ss_pred CHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 172 SYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
++|+.+|+++++++|++ ...+++.+|.++..+|+++.|+..+++
T Consensus 55 --~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 55 --TQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp --HHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred --HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 99999999999999996 137788999999999988877766554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=80.00 Aligned_cols=85 Identities=19% Similarity=0.280 Sum_probs=78.4
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
.++.++..+|.++...+++. +|+.+|.++++++|+++.+++.+|.++...+++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------------- 59 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYD----------EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY----------------- 59 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-----------------
T ss_pred ccHHHHHHHHHHHHHccCHH----------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH-----------------
Confidence 46788999999999999998 899999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 206 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g 206 (323)
++|+.+|+++++++|++ +.++..+|.++...|
T Consensus 60 ---~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 60 ---DEAIEYYQKALELDPNN-AEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcC
Confidence 99999999999999998 699999999998765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-09 Score=91.69 Aligned_cols=185 Identities=10% Similarity=0.042 Sum_probs=135.2
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC--CcHHHHHHHHHHHHHhhc
Q psy11738 33 VNKMLESS-E-YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE--DHYAIHKWLAVILNEKAT 108 (323)
Q Consensus 33 A~~~~~~~-~-~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~ 108 (323)
|+..+++. . .+.+...++.+|.++...|+ +++|+.++.+.+..+| .+.++....+.++..+|+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~-------------~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r 151 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGD-------------LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN 151 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-------------HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC
Confidence 66667765 2 34556667899999998875 5779999999999997 899999999999999999
Q ss_pred ccchHHHHHhHHHHHHHHHHHHccCCC----ChhHHHHH--hhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q psy11738 109 LEGTKARIQQLETIKHHMNKAIELKPD----DSTTLFML--GMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLE 182 (323)
Q Consensus 109 ~~~~~~~~~~~~~a~~~~~~al~l~p~----~~~~~~~l--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (323)
.+ .|.+.++++.+.+|+ +......| |++....| .+++++|...|++
T Consensus 152 ~d----------~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g------------------~~~~q~A~~~f~E 203 (310)
T 3mv2_B 152 VS----------TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATN------------------KETATSNFYYYEE 203 (310)
T ss_dssp HH----------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHT------------------CSTTTHHHHHHHH
T ss_pred HH----------HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhC------------------CccHHHHHHHHHH
Confidence 99 899999999999993 22333344 44454444 1356999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC----------CCCchhhhhhhcchhHHHHHHHHHhhccCC
Q psy11738 183 AEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP----------VKQDKDQCFEITDMPWYQRKIANAIFDTLP 252 (323)
Q Consensus 183 al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 252 (323)
+.+..|++ ......+. ++.++|++++|...++.+++.. |++..... ++..+.. .
T Consensus 204 l~~~~p~~-~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La----N~i~l~~-----~----- 267 (310)
T 3mv2_B 204 LSQTFPTW-KTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA----NQITLAL-----M----- 267 (310)
T ss_dssp HHTTSCSH-HHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH----HHHHHHH-----H-----
T ss_pred HHHhCCCc-ccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH----HHHHHHH-----H-----
Confidence 99988873 23333333 9999999999999999888874 55544321 1111100 0
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhh
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQN 277 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~ 277 (323)
.|+ +|.+++.++...+|+. +.+
T Consensus 268 lgk--~a~~l~~qL~~~~P~h-p~i 289 (310)
T 3mv2_B 268 QGL--DTEDLTNQLVKLDHEH-AFI 289 (310)
T ss_dssp TTC--TTHHHHHHHHHTTCCC-HHH
T ss_pred hCh--HHHHHHHHHHHhCCCC-hHH
Confidence 344 8899999999999998 443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-11 Score=87.90 Aligned_cols=102 Identities=12% Similarity=0.013 Sum_probs=82.2
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL 215 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 215 (323)
++.++..+|.+++..|++ ++|+.+|+++++++|++ +.+++++|.+|..+|++++|+.+|
T Consensus 3 ~~~~~~~~g~~~~~~~~~--------------------~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLY--------------------REAVHCYDQLITAQPQN-PVGYSNKAMALIKLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 456788899888887655 99999999999999998 699999999999999999999999
Q ss_pred HHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHH
Q psy11738 216 EMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 295 (323)
Q Consensus 216 ~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~ 295 (323)
++++.++|.+..... . ..+++.+|.++..+|+++.|+
T Consensus 62 ~~al~~~p~~~~~~~------------------------------------------~-~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 62 QQGLRYTSTAEHVAI------------------------------------------R-SKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHTSCSSTTSHHH------------------------------------------H-HHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHhCCCccHHHH------------------------------------------H-HHHHHHHHHHHHHHHhHhhhH
Confidence 999999887632100 1 345677888888888887777
Q ss_pred HHHHHh
Q psy11738 296 YYLEMT 301 (323)
Q Consensus 296 ~~~~~a 301 (323)
..+++.
T Consensus 99 ~~~~~~ 104 (111)
T 2l6j_A 99 VEVDEL 104 (111)
T ss_dssp SSSSSC
T ss_pred hHHHHh
Confidence 666543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.5e-11 Score=84.31 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=65.3
Q ss_pred cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 132 LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 132 l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
.+|+++.+++.+|.+++..|++ ++|+.+|+++++++|++ +.+++.+|.+|..+|++++|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A 60 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNA--------------------SRALALFEELVETDPDY-VGTYYHLGKLYERLDRTDDA 60 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHH
Confidence 4799999999999999998765 99999999999999998 69999999999999999999
Q ss_pred HHHHHHHhCCCCCC
Q psy11738 212 AYYLEMTKNYPVKQ 225 (323)
Q Consensus 212 ~~~~~~al~~~~~~ 225 (323)
+.+|++++.+.|..
T Consensus 61 ~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 61 IDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcC
Confidence 99999999886544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=83.15 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=61.7
Q ss_pred cCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q psy11738 186 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLE 265 (323)
Q Consensus 186 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~ 265 (323)
.+|++ +.+++.+|.+|...|++++|+.+|++++++
T Consensus 2 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------------------------------- 36 (100)
T 3ma5_A 2 EDPED-PFTRYALAQEHLKHDNASRALALFEELVET-------------------------------------------- 36 (100)
T ss_dssp ---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------
T ss_pred CCccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------
Confidence 36777 688888888888888887777766666554
Q ss_pred HHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 266 AEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 266 a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
+|++ +.+++.+|.+|..+|++++|+.+|++++++.|.........+...+|
T Consensus 37 ----~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 37 ----DPDY-VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp ----STTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ----CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence 5555 56788888888888888888888888888877655555555554443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-09 Score=81.47 Aligned_cols=115 Identities=18% Similarity=0.134 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.+++++|+.+++++.+.. ++.+. +|.+|....... +|+++|+++.+. .++.+++.||.+|..-.
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~----------~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQ----------KLFQYLSKACEL--NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHH----------HHHHHHHHHHHT--TCHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHH----------HHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence 457899999999999987 44454 888887665555 589999999987 78999999999887611
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCC
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNY 221 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 221 (323)
. -.+++++|+.+|+++.+. ++ +.+.++||.+|.. .+++++|+.+|++|.+.
T Consensus 72 g----------------~~~d~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 72 Y----------------VKKDLRKAAQYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp S----------------SCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred C----------------CCccHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 0 024569999999999987 44 6899999999999 99999999999999886
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-08 Score=97.43 Aligned_cols=188 Identities=12% Similarity=-0.006 Sum_probs=148.8
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHH-HHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIK-HHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
.+.....|++++...|.+++.|..++..+...|+.. +|+ ..|++|+...|.+...|..++.+....|++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~----------~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDS----------TVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKI 394 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCT----------THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 445678899999999999999999999998888877 675 889999999999998898888888777665
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-----------CCC----------chhHHHHHHHHHHHHcCCHHHHH
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ-----------HPL----------FYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~p~----------~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
+.|...|++++.. .|. ....+|...+.+..+.|+.+.|.
T Consensus 395 --------------------e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 395 --------------------PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888764 243 12357888889999999999999
Q ss_pred HHHHHHhCC-CCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 213 YYLEMTKNY-PVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 213 ~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
..|.+|++. .+..... + . ..+...+ ...++++.|...|.++++..|++ +..+...+......|+.
T Consensus 455 ~vf~~A~~~~~~~~~~l-y--------i--~~A~lE~--~~~~d~e~Ar~ife~~Lk~~p~~-~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDI-Y--------L--ENAYIEY--HISKDTKTACKVLELGLKYFATD-GEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHHTGGGSCTHH-H--------H--HHHHHHH--TTTSCCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCCCChHH-H--------H--HHHHHHH--HhCCCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHhCCCH
Confidence 999999886 2222111 1 0 1111111 11345899999999999999988 78888888888899999
Q ss_pred HHHHHHHHHhhCCCC
Q psy11738 292 EQAAYYLEMTKNYPA 306 (323)
Q Consensus 292 ~~A~~~~~~al~~~~ 306 (323)
+.|...|++|+...|
T Consensus 521 ~~AR~lferal~~~~ 535 (679)
T 4e6h_A 521 SQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-08 Score=84.90 Aligned_cols=140 Identities=14% Similarity=0.026 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhc-ccchH-----------------HHHHhHHHHHHHHHHHHc--
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKAT-LEGTK-----------------ARIQQLETIKHHMNKAIE-- 131 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~-----------------~~~~~~~~a~~~~~~al~-- 131 (323)
.+-+--.+..++-.+..+|+|.......|..|...+. +.... +....+..+.++..+++.
T Consensus 45 ~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~ 124 (301)
T 3u64_A 45 AQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETA 124 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344557888899999999999988877777766544 22111 112233334444444443
Q ss_pred ----------------------cCCCChhHHHHHhhHHHHh-----cCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy11738 132 ----------------------LKPDDSTTLFMLGMWCFEI-----TDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAE 184 (323)
Q Consensus 132 ----------------------l~p~~~~~~~~lg~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 184 (323)
.+|++.++++..|...... ++++ .+ +.-..|...+++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~----Al----------~~l~~A~a~lerAl 190 (301)
T 3u64_A 125 YPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSA----LP----------DTVHAAVMMLERAC 190 (301)
T ss_dssp STTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSC----CH----------HHHHHHHHHHHHHH
T ss_pred CccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChH----HH----------HhHHHHHHHHHHHH
Confidence 3455667777777655331 1111 11 12388999999999
Q ss_pred hcCCCch-hHHHHHHHHHHHHc-----CCHHHHHHHHHHHhCCCCCC
Q psy11738 185 KQHPLFY-SQNVLMLGKTYMRL-----ENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 185 ~~~p~~~-~~~~~~lg~~y~~~-----g~~~~A~~~~~~al~~~~~~ 225 (323)
+++|+.. ..+|..||..|... |+.++|..+|++|+.++|+.
T Consensus 191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 9999931 35899999888775 66666666666666666543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.03 E-value=8.8e-10 Score=76.48 Aligned_cols=86 Identities=16% Similarity=0.096 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHH
Q psy11738 43 KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETI 122 (323)
Q Consensus 43 ~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (323)
+.++..++.+|.++...|+ +++|+.+++++++++|.++.++..+|.++...|++. +|
T Consensus 6 ~~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~----------~A 62 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGD-------------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD----------EA 62 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH----------HH
T ss_pred cccHHHHHHHHHHHHHccC-------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHH----------HH
Confidence 3467888999999988885 467999999999999999999999999999999998 89
Q ss_pred HHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
+.+|+++++++|+++.++..+|.++...|
T Consensus 63 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999887643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-10 Score=80.40 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=76.1
Q ss_pred HHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 141 FMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQ-NVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 141 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
+.+|..++..|++ ++|+..|+++++++|++ +. +++.+|.+|..+|++++|+.+|++++
T Consensus 4 ~~~a~~~~~~~~~--------------------~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 4 LKTIKELINQGDI--------------------ENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHTCH--------------------HHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH--------------------HHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567777777654 99999999999999998 68 99999999999999999999999999
Q ss_pred CCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 220 NYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
+++|++..... .+.+.+++..|.++...+|+.
T Consensus 63 ~~~p~~~~~~~----------------------~~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 63 ELNPDSPALQA----------------------RKMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHCTTSTHHHH----------------------HHHHHHHHHHHCCTTHHHHCC
T ss_pred hcCCCcHHHHH----------------------HHHHHHHHHHHHHHhccCccc
Confidence 99998875421 134678899999888888875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=97.30 Aligned_cols=228 Identities=8% Similarity=-0.018 Sum_probs=166.6
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH-HHHHhhccCCCCcHHHHHHHHHHHHHhhc
Q psy11738 32 EVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAY-FLVYNALPQHEDHYAIHKWLAVILNEKAT 108 (323)
Q Consensus 32 ~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 108 (323)
.....|+++ ..|.++++|+..+..+...|+... |+ ..+++|+...|.+...+..++.+....|+
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~-------------a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDST-------------VITKYLKLGQQCIPNSAVLAFSLSEQYELNTK 393 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTT-------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHH-------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 344566665 489999999999998888876543 76 99999999999998888888888888888
Q ss_pred ccchHHHHHhHHHHHHHHHHHHcc-----------CCC-----------ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 109 LEGTKARIQQLETIKHHMNKAIEL-----------KPD-----------DSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 109 ~~~~~~~~~~~~~a~~~~~~al~l-----------~p~-----------~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
++ .|.+.|++++.. .|. ...+|...+.+..+.++.
T Consensus 394 ~e----------~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l------------- 450 (679)
T 4e6h_A 394 IP----------EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL------------- 450 (679)
T ss_dssp HH----------HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH-------------
T ss_pred HH----------HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH-------------
Confidence 77 677788888865 253 234566666665555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcC-CHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE-NYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIAN 245 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~ 245 (323)
+.|...|.+|++..|......+...+.+..+.+ +++.|...|+.+++..|++..-.. .+..+
T Consensus 451 -------~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~-~y~~f--------- 513 (679)
T 4e6h_A 451 -------AASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYIN-KYLDF--------- 513 (679)
T ss_dssp -------HHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHH-HHHHH---------
T ss_pred -------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHH-HHHHH---------
Confidence 899999999998733222356666666666655 489999999999998887654211 11111
Q ss_pred HhhccCCCCcHHHHHHHHHHHHhhCCc--chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy11738 246 AIFDTLPTSSYEEALKYFLEAEKQHPL--FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEATKLLEK 316 (323)
Q Consensus 246 ~~~~~~~~~~~~~Al~~~~~a~~~~p~--~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 316 (323)
... .++.+.|...|++++...|+ .....|......-...|+.+.+...++++.+..|++.--+.+.+
T Consensus 514 -e~~---~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ 582 (679)
T 4e6h_A 514 -LIY---VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTN 582 (679)
T ss_dssp -HHH---HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred -HHh---CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 111 46789999999999998883 22466777777777889999999999999999888665455443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.7e-10 Score=79.52 Aligned_cols=91 Identities=10% Similarity=0.105 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh-HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHH
Q psy11738 97 KWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST-TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEE 175 (323)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
+..|.++...|++. +|+..|+++++++|+++. +++.+|.++...|++ ++
T Consensus 4 ~~~a~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~--------------------~~ 53 (99)
T 2kc7_A 4 LKTIKELINQGDIE----------NALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW--------------------QK 53 (99)
T ss_dssp HHHHHHHHHHTCHH----------HHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH--------------------HH
T ss_pred HHHHHHHHHcCCHH----------HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH--------------------HH
Confidence 56788888888888 899999999999999999 999999999998766 99
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 176 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
|+.+|+++++++|++ ..++.. +.+.+++.+|+++...+|.+.
T Consensus 54 A~~~~~~al~~~p~~-~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 54 ALNNYQSAIELNPDS-PALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHHCTTS-THHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHhcCCCc-HHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 999999999999998 576643 667889999998888877654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-09 Score=96.81 Aligned_cols=175 Identities=11% Similarity=0.138 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh-----------------HHHHHhhHHHHhcCCcH
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST-----------------TLFMLGMWCFEITDMPW 155 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-----------------~~~~lg~~~~~~~~~~~ 155 (323)
|......|..+...|++. +|++.|.++++..|.... ++..+|.+|...|++
T Consensus 4 p~~~l~~a~~l~~~~~y~----------eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~-- 71 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYN----------EAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAK-- 71 (434)
T ss_dssp TTHHHHHHHHHHHHTCHH----------HHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCH--
T ss_pred hHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCH--
Confidence 445566677777778887 899999999999998654 477889998888765
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhh
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-----SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQC 230 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 230 (323)
++|+.+|.+++++.+... ..+...+|.++...|++++|+.++++++...+.......
T Consensus 72 ------------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (434)
T 4b4t_Q 72 ------------------DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL 133 (434)
T ss_dssp ------------------HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred ------------------HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence 999999999998755431 134667899999999999999999999876543322111
Q ss_pred hhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh------CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 231 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 231 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
.......++..++. .|+|.+|+..+.++... .|.. ..++..+|.+|..+|++++|..+|++++.+
T Consensus 134 -----~~~~~~~la~~~~~---~g~~~~A~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 134 -----KHSLSIKLATLHYQ---KKQYKDSLALINDLLREFKKLDDKPSL-VDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp -----HHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHTTSSCSTHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH---ccChHHHHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 01122234444443 68999999999998866 2333 467899999999999999999999999876
Q ss_pred CC
Q psy11738 305 PA 306 (323)
Q Consensus 305 ~~ 306 (323)
.+
T Consensus 205 ~~ 206 (434)
T 4b4t_Q 205 AN 206 (434)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=77.14 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=36.8
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCC
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~ 305 (323)
..++++|+.+|+++.+. .+ +.++++||.+|.. .+++++|+.+|++|.+..
T Consensus 74 ~~d~~~A~~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 34566666666666655 23 5778888888888 888888888888888773
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-08 Score=70.72 Aligned_cols=75 Identities=8% Similarity=0.010 Sum_probs=67.1
Q ss_pred CCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHH
Q psy11738 133 KPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 133 ~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
+|+++..+..+|.+++..++- ...++|..+++++++++|++ +.+++.+|..+...|+|++|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~-----------------~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQ-----------------AMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT-----------------CCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCC-----------------CCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHH
Confidence 699999999999998765531 12399999999999999998 799999999999999999999
Q ss_pred HHHHHHhCCCCCC
Q psy11738 213 YYLEMTKNYPVKQ 225 (323)
Q Consensus 213 ~~~~~al~~~~~~ 225 (323)
.++++++..+|.+
T Consensus 64 ~~w~~~l~~~p~~ 76 (93)
T 3bee_A 64 DTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHTCCCTT
T ss_pred HHHHHHHhhCCCC
Confidence 9999999999983
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-07 Score=82.03 Aligned_cols=145 Identities=14% Similarity=0.036 Sum_probs=114.2
Q ss_pred hhHHHHHHhhhHHHhh---ccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 12 KVSEEFLKKSDDLFEE---QQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..+=+++.+|..++.. ..+.+|+.+++++ .+|+++.++-.++.+|......... ..........++. ...++
T Consensus 194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~--~~~~~~~l~~a~~-a~~a~ 270 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPL--DEKQLAALNTEID-NIVTL 270 (372)
T ss_dssp GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHH-HHHTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCC--chhhHHHHHHHHH-HHHhc
Confidence 3445567778877764 5668899999998 5999999999999998754433321 1222333445555 23567
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
..+|.++.++..++..+...|+++ +|+..+++|+.++|+ ..++..+|.++...|++
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d----------~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~------------- 326 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTD----------ESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMN------------- 326 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCH-------------
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHH----------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCH-------------
Confidence 889999999999999888889999 899999999999975 67888999998888765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCc
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~ 190 (323)
++|+..|.+|+.++|..
T Consensus 327 -------~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 327 -------REAADAYLTAFNLRPGA 343 (372)
T ss_dssp -------HHHHHHHHHHHHHSCSH
T ss_pred -------HHHHHHHHHHHhcCCCc
Confidence 99999999999999985
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-08 Score=91.50 Aligned_cols=102 Identities=12% Similarity=0.110 Sum_probs=80.3
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc-----CCCChh---HHHHHhhHHHHhcCCcHHHHHH
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL-----KPDDST---TLFMLGMWCFEITDMPWYQRKI 160 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l-----~p~~~~---~~~~lg~~~~~~~~~~~~~~~~ 160 (323)
+|.-+..+.++|.+|..+|+++ +|..++++++++ .|+++. .+.+||.+|..+|++
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~----------eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~------- 409 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYE----------EASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI------- 409 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH-------
T ss_pred CHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH-------
Confidence 3445566778888888888888 777777777764 566654 588899999988755
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhc-----CCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 161 ANAIFDTLPTSSYEEALKYFLEAEKQ-----HPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|+..|++|+++ .|+++ .....+|+.++..++.+++|...|+++.+
T Consensus 410 -------------~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 410 -------------EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 55552 35577899999999999999999999854
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=90.99 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=94.6
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC-----CCCCchhhhhhhcch
Q psy11738 169 PTSSYEEALKYFLEAEKQ-----HPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-----PVKQDKDQCFEITDM 236 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~-----~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~ 236 (323)
.+|+|++|+..+++++++ .|++ ...++.+||.+|..+|++++|+.++++++.+ .|+++.. ...+.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~-a~~l~-- 397 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL-GMAVM-- 397 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH-HHHHH--
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHH--
Confidence 468999999999999986 4444 2467999999999999999999999999876 3444332 12222
Q ss_pred hHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh-----CCcc--hhhhhHHHHHHHHHhcCHHHHHHHHHHhhC
Q psy11738 237 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ-----HPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKN 303 (323)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~-----~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 303 (323)
.+|..+.. .|++++|+..|++|+.+ .|+. ......+|+.++..+|++++|...|.++.+
T Consensus 398 -----nLa~~~~~---~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 -----RAGLTNWH---AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -----HHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHH---CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333 78999999999999976 3333 145678999999999999999999988754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.6e-08 Score=68.15 Aligned_cols=75 Identities=12% Similarity=0.049 Sum_probs=65.1
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+|++++.+..+|.++...++..- ..+|..+++++++++|+++.+++.+|..++..|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~-------~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y--------------- 59 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAM-------TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRF--------------- 59 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCC-------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------
T ss_pred CCCCHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCH---------------
Confidence 68999999999999977665310 01788999999999999999999999999998755
Q ss_pred CCCCHHHHHHHHHHHHhcCCCc
Q psy11738 169 PTSSYEEALKYFLEAEKQHPLF 190 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~~p~~ 190 (323)
++|+.+|+++++.+|..
T Consensus 60 -----~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 60 -----QEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp -----HHHHHHHHHHHTCCCTT
T ss_pred -----HHHHHHHHHHHhhCCCC
Confidence 99999999999999984
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-07 Score=71.70 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=78.0
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-CCchhHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-PLFYSQNVLMLG 199 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg 199 (323)
.+.+.|.+.++.+|.+..+.+.+|+++...++. .++++++..++.+++.+ |....+++++||
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~-----------------~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYN-----------------DDIRKGIVLLEELLPKGSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSH-----------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 566778889999999999999999988776532 12389999999999998 733369999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 200 KTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 200 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
..|+++|+|++|+.+++++++++|.+..+
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999999999999998654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-07 Score=85.23 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHH
Q psy11738 169 PTSSYEEALKYFLEAEKQ-----HPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQR 241 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~-----~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 241 (323)
..|+|++|+..+++++++ .|+++ ..++.+||.+|..+|+|++|+.++++++.+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-------------------- 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-------------------- 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------------------
Confidence 457899999999999986 45552 356899999999999999999999998764
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHh-hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCC
Q psy11738 242 KIANAIFDTLPTSSYEEALKYFLEAEK-QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 242 ~~a~~~~~~~~~~~~~~Al~~~~~a~~-~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 305 (323)
+++.+. -+|+. +..+.+||.+|..+|++++|...|++|+++.
T Consensus 370 ---------------------~~~~lG~~Hp~~-a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 370 ---------------------YSKHYPVYSLNV-ASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp ---------------------HHHHSCSSCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHcCCCChHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 111111 15554 6779999999999999999999999999873
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.3e-07 Score=68.45 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-C-CChhHHHHHhhHHHHhc
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-P-DDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p-~~~~~~~~lg~~~~~~~ 151 (323)
.+..+...|...+..+|.+.++.+.+|.++....+.. ...+++..++..++.+ | ++.+++|+||..++..+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~-------~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYND-------DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHH-------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc
Confidence 4556777788888888999999999999999876443 2227889999999999 7 67899999999999987
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHH
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLM 197 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 197 (323)
++ ++|.++++++++++|++ ..+...
T Consensus 86 ~Y--------------------~~A~~y~~~lL~ieP~n-~QA~~L 110 (152)
T 1pc2_A 86 EY--------------------EKALKYVRGLLQTEPQN-NQAKEL 110 (152)
T ss_dssp CH--------------------HHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CH--------------------HHHHHHHHHHHhcCCCC-HHHHHH
Confidence 65 99999999999999998 466443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=5e-07 Score=64.68 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=62.0
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHHHcCCH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-------PLFYSQNVLMLGKTYMRLENY 208 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~lg~~y~~~g~~ 208 (323)
++..++.+|..++..+++ ..|+.+|+.|++.. +. .+.++..||.+|.++|++
T Consensus 4 sa~dc~~lG~~~~~~~~y--------------------~~A~~W~~~Al~~~~~~~~~~~~-~~~i~~~L~~~~~~~g~~ 62 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADY--------------------YHTELWMEQALRQLDEGEISTID-KVSVLDYLSYAVYQQGDL 62 (104)
T ss_dssp CHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHTTCCCSSC-HHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHccch--------------------HHHHHHHHHHHHhhhccCCCccc-HHHHHHHHHHHHHHccCH
Confidence 456688999999998765 99999999999873 22 257899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCchh
Q psy11738 209 EQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 209 ~~A~~~~~~al~~~~~~~~~ 228 (323)
+.|+.+++++++++|++...
T Consensus 63 ~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 63 DKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999998653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00026 Score=65.14 Aligned_cols=254 Identities=10% Similarity=0.010 Sum_probs=157.3
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhcccCCCC----------------cH---
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS-E-YKEDVEIIWRLVRVKYNLATHSSSL----------------SD--- 68 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~-~~~~~~~~~~la~~y~~~~~~~~~~----------------~~--- 68 (323)
+.+.+.+.++.+-..+-.|+++.+..+++++ . .| +++.|......-...+...... +.
T Consensus 10 ~i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred chHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 4778888899998888889999999999987 3 45 7787766555544444211100 00
Q ss_pred ----------HHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHh--------------------------------
Q psy11738 69 ----------ADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEK-------------------------------- 106 (323)
Q Consensus 69 ----------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-------------------------------- 106 (323)
+...+..+.+...|++|+..-+.+.+ ..|........
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~-~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLS-ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHH-HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 01246678899999999996333332 22222111110
Q ss_pred ----------------hcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCC
Q psy11738 107 ----------------ATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPT 170 (323)
Q Consensus 107 ----------------~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
++..+... ..........|++++...|..+..|...+.++...|+.
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~-~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~----------------- 229 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGG-RPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQK----------------- 229 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCH-HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCH-----------------
T ss_pred hhccHHHHHHHHHHHhcCCccCcc-hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------
Confidence 00000000 00012345689999999999999999999998888766
Q ss_pred CCHHHHHHHHHHHHhcCCCch---------------------------------------hHHHHHHHHHHHHcCCHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFY---------------------------------------SQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~---------------------------------------~~~~~~lg~~y~~~g~~~~A 211 (323)
+.|...|++|+.. |... ...|...+..+.+.++.+.|
T Consensus 230 ---~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 230 ---EKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp ---HHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ---HHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 5555666665555 5541 12344444455567888999
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
...|++| . .|..... . |. ..|..-+.. .++.+.|...|..++...|+. +..+...+......|+.
T Consensus 306 R~i~~~A-~-~~~~~~~-v-------~i--~~A~lE~~~--~~d~~~ar~ife~al~~~~~~-~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 306 RKLFIEL-G-NEGVGPH-V-------FI--YCAFIEYYA--TGSRATPYNIFSSGLLKHPDS-TLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHH-T-TSCCCHH-H-------HH--HHHHHHHHH--HCCSHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHh-h-CCCCChH-H-------HH--HHHHHHHHH--CCChHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCH
Confidence 9999999 3 3322111 1 10 011111111 235789999999999998987 66667777778889999
Q ss_pred HHHHHHHHHhh
Q psy11738 292 EQAAYYLEMTK 302 (323)
Q Consensus 292 ~~A~~~~~~al 302 (323)
+.|...|+++.
T Consensus 371 ~~aR~l~er~~ 381 (493)
T 2uy1_A 371 ENARALFKRLE 381 (493)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99998888873
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=79.21 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHH
Q psy11738 170 TSSYEEALKYFLEAEKQ-----HPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~-----~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 242 (323)
.|+|++|+..+++++++ .|+++ ..++.+||.+|..+|++++|+.++++++.+
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i--------------------- 358 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP--------------------- 358 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------------
Confidence 46889999999999976 44442 356889999999999999999999988764
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHH-hhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC
Q psy11738 243 IANAIFDTLPTSSYEEALKYFLEAE-KQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 304 (323)
Q Consensus 243 ~a~~~~~~~~~~~~~~Al~~~~~a~-~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 304 (323)
+++.+ ..+|+. +..+++||.+|..+|++++|...|++|+++
T Consensus 359 --------------------~~~~lg~~Hp~~-a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 359 --------------------YRIFFPGSHPVR-GVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp --------------------HHHHSCSSCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------HHHHcCCCChHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11111 125554 677999999999999999999999999976
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=2.6e-06 Score=76.95 Aligned_cols=84 Identities=21% Similarity=0.178 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHcc-----CCCChh---HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---
Q psy11738 118 QLETIKHHMNKAIEL-----KPDDST---TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--- 186 (323)
Q Consensus 118 ~~~~a~~~~~~al~l-----~p~~~~---~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 186 (323)
.+.+|...+++++++ .|+++. .+.+||.+|..+|++ ++|+.++++++++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~--------------------~eA~~~~~~aL~i~~~ 372 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW--------------------EGALKYGQKIIKPYSK 372 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH--------------------HHHHHHHHHHHHHHHH
Confidence 456888999999884 677765 577889999888655 9999999999986
Q ss_pred --CCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 187 --HPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 187 --~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
.|++ .+..+++||.+|..+|++++|+.+|++|+.+
T Consensus 373 ~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 373 HYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 3443 2467999999999999999999999999875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.19 E-value=9.2e-06 Score=57.92 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-------CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-------PDDSTTLFMLGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-------p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+.-.+.+|..+...+++. .|+..|++|++.. +..+.++..||.+++.+|++
T Consensus 5 a~dc~~lG~~~~~~~~y~----------~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~------------ 62 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYY----------HTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL------------ 62 (104)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH------------
T ss_pred HHHHHHHHHHHHHccchH----------HHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH------------
Confidence 445678999999999999 8888899988863 34577899999999999866
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy11738 166 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg 199 (323)
+.|+.+++++++++|++ ..+..+++
T Consensus 63 --------~~A~~~~~~al~l~P~~-~~~~~n~~ 87 (104)
T 2v5f_A 63 --------DKALLLTKKLLELDPEH-QRANGNLK 87 (104)
T ss_dssp --------HHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCCCC-HHHHhhHH
Confidence 99999999999999998 67777776
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.01 E-value=6.1e-05 Score=69.31 Aligned_cols=52 Identities=6% Similarity=-0.116 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
.+.....|++++...|.. +..|+..+..+...|+.++|...|++|+.. |.+.
T Consensus 195 ~~Rv~~~ye~al~~~p~~-~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYA-EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 345678999999999988 899999999999999999999999999999 8754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=7.3e-06 Score=74.03 Aligned_cols=84 Identities=18% Similarity=0.108 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHcc-----CCCChh---HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---
Q psy11738 118 QLETIKHHMNKAIEL-----KPDDST---TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--- 186 (323)
Q Consensus 118 ~~~~a~~~~~~al~l-----~p~~~~---~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 186 (323)
...+|...+++++++ .|+++. .+.+||.+|..+|++ ++|+.++++++++
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~--------------------~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL--------------------EEALFYGTRTMEPYRI 361 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCH--------------------HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccH--------------------HHHHHHHHHHHHhHHH
Confidence 445889999999975 466654 577888888888655 9999999999976
Q ss_pred --CCCc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 187 --HPLF--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 187 --~p~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
.|++ ....+++||.+|..+|++++|+.+|++|+.+
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3443 2466999999999999999999999999875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.88 E-value=5.1e-05 Score=55.42 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-CCchhHHHHHH
Q psy11738 120 ETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQH-PLFYSQNVLML 198 (323)
Q Consensus 120 ~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~l 198 (323)
..+.+.|.+.+..++.+..+.+.+|+++....+. .+..++|..++..+..+ |...-..++.|
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~-----------------~d~~~GI~lLe~l~~~~~p~~~Rd~lY~L 80 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-----------------DDIRKGIVLLEELLPKGSKEEQRDYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH-----------------HHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 3566778888888889999999999887665433 11266899999999987 63335889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 199 GKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 199 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
|..++++|+|++|+.+++..++..|.+..+
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999998654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00016 Score=52.74 Aligned_cols=98 Identities=12% Similarity=0.025 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-C-CChhHHHHHhhHHHHhc
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-P-DDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p-~~~~~~~~lg~~~~~~~ 151 (323)
.+..+...|.+.+..++-+.++.+.+|.++....+.... .+++..++..++.+ | ..-+..|.||..+++.|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~-------~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDI-------RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHH-------HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHH-------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 455567777777777788899999999999886666532 25778888888887 5 56688999999999987
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLG 199 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg 199 (323)
++ ++|.++++..|+++|++ ..+.....
T Consensus 89 ~Y--------------------~~A~~~~~~lL~~eP~n-~QA~~Lk~ 115 (126)
T 1nzn_A 89 EY--------------------EKALKYVRGLLQTEPQN-NQAKELER 115 (126)
T ss_dssp CH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred hH--------------------HHHHHHHHHHHHhCCCC-HHHHHHHH
Confidence 65 99999999999999998 56654433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00038 Score=52.10 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=85.9
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChh--------HHHHHhhHHHHhcCCcHHHH
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDST--------TLFMLGMWCFEITDMPWYQR 158 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~--------~~~~lg~~~~~~~~~~~~~~ 158 (323)
-+.|++++.+..+...+...|+...- ......++.|++|+..-|-... .|...+.+ ...++
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d----~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D------ 75 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSD----ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQE------ 75 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCH----HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHC------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchh----hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcC------
Confidence 36799999999988888888887311 1122666889999998876421 22223322 22233
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
.++|...|+.++.++..+ +.+|...+..-.++|+.+.|.+.+.+|+.+.|....
T Consensus 76 --------------~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 76 --------------PDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp --------------GGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred --------------HHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 399999999999998887 899999999999999999999999999999988653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0026 Score=58.49 Aligned_cols=164 Identities=11% Similarity=-0.036 Sum_probs=120.8
Q ss_pred hhhHHHhhccHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc--CCCCcHH
Q psy11738 20 KSDDLFEEQQFEEVNKMLESS---EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP--QHEDHYA 94 (323)
Q Consensus 20 ~a~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 94 (323)
..+.+-+.|++++|+.+++.+ .-+-+..++..+-.+|...+..... .+.+.+++|+..++...+ +.| +..
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----~~~~~l~~A~~lf~~M~~~G~~P-d~~ 106 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----SPNPGLSRGFDIFKQMIVDKVVP-NEA 106 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----SCCHHHHHHHHHHHHHHHTTCCC-CHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----hhcchHHHHHHHHHHHHHhCCCC-CHH
Confidence 456667789999999999987 2334556666666666655543321 124567888888887654 356 455
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
.+..+-..|...|+++ +|.+.|++..+.. +-+...|..+-..|...|++
T Consensus 107 tyn~lI~~~~~~g~~~----------~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~-------------------- 156 (501)
T 4g26_A 107 TFTNGARLAVAKDDPE----------MAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA-------------------- 156 (501)
T ss_dssp HHHHHHHHHHHHTCHH----------HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHhcCCHH----------HHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH--------------------
Confidence 6677788888888888 8888888887653 22556666676677777665
Q ss_pred HHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 174 EEALKYFLEAEKQ--HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 174 ~~A~~~~~~al~~--~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
++|.+.|.+..+. .|+ ..+|..|-.+|.+.|+.++|.+.+++...
T Consensus 157 ~~A~~l~~~M~~~G~~Pd--~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPE--EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 9999999998775 676 47799999999999999999999998754
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0008 Score=49.29 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=52.7
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT 311 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 311 (323)
.....+..++|..+...+..+|....+.++.||..+.++|+|++|..+.+..|++.|++.-.
T Consensus 53 S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 53 STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 33445678999999999999996546789999999999999999999999999998875443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0013 Score=48.25 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=63.2
Q ss_pred ChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHH
Q psy11738 136 DSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL 215 (323)
Q Consensus 136 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 215 (323)
.+.+.+.+++++....+. .+..++|..++..++.+|...-+.++.||..+.++|+|++|..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~-----------------~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDV-----------------NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp CHHHHHHHHHHHHHSSCH-----------------HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 567888888777665433 123788999999999898654688999999999999999999999
Q ss_pred HHHhCCCCCCchh
Q psy11738 216 EMTKNYPVKQDKD 228 (323)
Q Consensus 216 ~~al~~~~~~~~~ 228 (323)
+..+...|.+..+
T Consensus 102 d~lL~~eP~N~QA 114 (134)
T 3o48_A 102 DTLFEHERNNKQV 114 (134)
T ss_dssp HHHHTTCTTCHHH
T ss_pred HHHHhhCCCCHHH
Confidence 9999999998755
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.01 Score=54.52 Aligned_cols=177 Identities=10% Similarity=0.040 Sum_probs=117.1
Q ss_pred HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCC-CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHH
Q psy11738 100 AVILNEKATLEGTKARIQQLETIKHHMNKAIELKP-DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALK 178 (323)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 178 (323)
-..+...|+.. +|.+.|+++.+..- -+...|..|-..|...+... .....+..++|..
T Consensus 33 id~c~k~G~~~----------~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~-----------~~~~~~~l~~A~~ 91 (501)
T 4g26_A 33 LDMCSKKGDVL----------EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAAT-----------ESSPNPGLSRGFD 91 (501)
T ss_dssp HHHTTTSCCHH----------HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCS-----------SSSCCHHHHHHHH
T ss_pred HHHHHhCCCHH----------HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchh-----------hhhhcchHHHHHH
Confidence 34556667776 88888988877532 23444544444443322210 0011123488999
Q ss_pred HHHHHHhc--CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCC--CCCCchhhhhhhcchhHHHHHHHHHhhccCCCC
Q psy11738 179 YFLEAEKQ--HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY--PVKQDKDQCFEITDMPWYQRKIANAIFDTLPTS 254 (323)
Q Consensus 179 ~~~~al~~--~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 254 (323)
.|.+..+. .|+ ..+|..+-..|.+.|++++|...|++..+. .|+.. .+..+ ..++. ..|
T Consensus 92 lf~~M~~~G~~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--tyn~l----------I~~~~---~~g 154 (501)
T 4g26_A 92 IFKQMIVDKVVPN--EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR--SYGPA----------LFGFC---RKG 154 (501)
T ss_dssp HHHHHHHTTCCCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH--HHHHH----------HHHHH---HTT
T ss_pred HHHHHHHhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--eehHH----------HHHHH---HCC
Confidence 99987764 576 478999999999999999999999988654 23211 11111 11111 268
Q ss_pred cHHHHHHHHHHHHhh--CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhC--CCChhHHHHHHHH
Q psy11738 255 SYEEALKYFLEAEKQ--HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN--YPAVQEATKLLEK 316 (323)
Q Consensus 255 ~~~~Al~~~~~a~~~--~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~--~~~~~~~~~~l~~ 316 (323)
++++|.+.|.+.... .|+ ...|..|-.+|.+.|+.++|.+.+++--+ ..|+...-..|..
T Consensus 155 ~~~~A~~l~~~M~~~G~~Pd--~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 155 DADKAYEVDAHMVESEVVPE--EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp CHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 999999999987754 565 47789999999999999999999988654 4666655555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0017 Score=48.61 Aligned_cols=115 Identities=11% Similarity=-0.012 Sum_probs=85.8
Q ss_pred hcCCCchhHHHHHHHHHHHHcCCH------HHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHH
Q psy11738 185 KQHPLFYSQNVLMLGKTYMRLENY------EQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEE 258 (323)
Q Consensus 185 ~~~p~~~~~~~~~lg~~y~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 258 (323)
-+.|++ ++.|..........|++ ++-++.|++|+..-|-........+..+ |.. ++.+.. .++.++
T Consensus 7 ~~~p~~-yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~L-WIr----YA~~~e--i~D~d~ 78 (161)
T 4h7y_A 7 MMMANN-PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARI-QVR----FAELKA--IQEPDD 78 (161)
T ss_dssp ---CCS-HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHH-HHH----HHHHHH--HHCGGG
T ss_pred eeCCCC-HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHH-HHH----HHHHHH--hcCHHH
Confidence 357888 58888888888888999 9999999999877655432111122111 221 122211 357889
Q ss_pred HHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 259 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 259 Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
|.+.|+.++.++..+ +.+|.+.|..-...|+...|...+.+|+.+.|.+
T Consensus 79 aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 79 ARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 999999999999888 8999999999999999999999999999997763
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0025 Score=47.33 Aligned_cols=99 Identities=9% Similarity=0.008 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC-CcHHHHHHHHHHHHH
Q psy11738 28 QQFEEVNKMLESS-EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE-DHYAIHKWLAVILNE 105 (323)
Q Consensus 28 ~~~~~A~~~~~~~-~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~ 105 (323)
.+.......|.+- .+.-.+++.|.+|.++....+ .....+++..++..+..+| ..-+.++.+|..++.
T Consensus 20 eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~----------~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk 89 (144)
T 1y8m_A 20 QQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTD----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK 89 (144)
T ss_dssp HHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSS----------HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH
Confidence 3334444444433 345688999999999987765 3456789999999999888 577789999999999
Q ss_pred hhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 106 KATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
+|++. +|+++.+..++..|+|..+......+
T Consensus 90 l~~Y~----------~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 90 LGEYS----------MAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp TTCHH----------HHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hhhHH----------HHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999 89999999999999998776655443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0016 Score=48.33 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=56.0
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh-HHHHHHHHHH
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ-EATKLLEKAK 318 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 318 (323)
.....+..+++..++..+..+|....+.++.||..+.++|+|.+|..+.+..|++.|++ ++..+.+-++
T Consensus 52 S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 52 STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 121 (144)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 33455678999999999999996546788999999999999999999999999998875 5544444333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0055 Score=46.77 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=54.8
Q ss_pred HHHHHHHHHHccCCCChh---------HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-----
Q psy11738 121 TIKHHMNKAIELKPDDST---------TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ----- 186 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~---------~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 186 (323)
.|+-....++.+..+++. +...+|..++..+++ ..|...|++|+++
T Consensus 38 sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~ey--------------------rrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 38 NVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEY--------------------RNAVSKYTMALQQKKALS 97 (167)
T ss_dssp HHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHH--------------------HHHHHHHHHHHHHHHHHh
Confidence 455555555555433333 688899999988766 8888888887654
Q ss_pred -CCC---------ch---------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 187 -HPL---------FY---------SQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 187 -~p~---------~~---------~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
.|. .. .+..+.++.||..+|++++|+..++..
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111 00 157899999999999999999998764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.037 Score=53.03 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
++|+-|++.-++|+...|... .+|+.|+.||..+|+|+.|+=.++..
T Consensus 351 ~~~elAL~~Ak~AV~~aPseF-~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 351 GDYELALGVSNTSTELALDSF-ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TCHHHHHHHHHHHHHHCSSCH-HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhcCchhh-HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 567999999999999999984 99999999999999999999999887
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.022 Score=43.51 Aligned_cols=119 Identities=15% Similarity=0.033 Sum_probs=71.8
Q ss_pred cCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHH
Q psy11738 132 LKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 211 (323)
Q Consensus 132 l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A 211 (323)
+-|..++....++...+..|++ ..|+-++. ..+..++.+.-+.||...+++..|
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY--------------------~R~Lf~L~------~lNT~Ts~YYk~LCy~klKdYkkA 81 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEY--------------------TRALFHLH------KLNTCTSKYYESLCYKKKKDYKKA 81 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCH--------------------HHHHHHHH------TCCBHHHHHHHHHHHHHTTCHHHH
T ss_pred HccCChHHHhhhhhhhhhcchH--------------------hHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788877777654 66655442 223468888899999999999999
Q ss_pred HHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCH
Q psy11738 212 AYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291 (323)
Q Consensus 212 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~ 291 (323)
+.++++.+.-+.+...+.-..+ ...-++|.+....+..+|......|+.
T Consensus 82 ~~~le~il~~kvd~d~~~d~~~-------------------------------~~ffvd~~DkEfFy~l~a~lltq~g~r 130 (242)
T 3kae_A 82 IKSLESILEGKVERDPDVDARI-------------------------------QEMFVDPGDEEFFESLLGDLCTLSGYR 130 (242)
T ss_dssp HHHHHHHHTTCSBCCCCCCHHH-------------------------------HTTSCCTTCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcccccCccccccc-------------------------------ceeeeccchHHHHHHHHHHHHHHhcCH
Confidence 9999999943222110000000 011234554233345567777777777
Q ss_pred HHHHHHHHHhhCCCCh
Q psy11738 292 EQAAYYLEMTKNYPAV 307 (323)
Q Consensus 292 ~~A~~~~~~al~~~~~ 307 (323)
++|+.+|.+...+.|-
T Consensus 131 ~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 131 EEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHhhhHhhhhcCCccc
Confidence 7777777776665544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.006 Score=46.53 Aligned_cols=106 Identities=11% Similarity=-0.026 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHhcCCCc--------hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHH
Q psy11738 171 SSYEEALKYFLEAEKQHPLF--------YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRK 242 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~--------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 242 (323)
+.|+.|+.....++.+..++ ...++..+|..+...|+|..|...|++|+.....-..... .....
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s-~~~~~------ 106 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK-VRPST------ 106 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC-ccccc------
Confidence 56799999998877763222 1147899999999999999999999999765211000000 00000
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHH
Q psy11738 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300 (323)
Q Consensus 243 ~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 300 (323)
+. ...+. ....+ +.. .+..+.++.||.++|++++|+..++.
T Consensus 107 ------~~--~ss~p-------~s~~~-~~e-~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 107 ------GN--SASTP-------QSQCL-PSE-IEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -------------------------CC-CCH-HHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ------cc--cCCCc-------ccccc-cch-HHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 00 00000 01122 222 46788999999999999999999866
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.14 Score=49.13 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHH--Hc-CCHHHHHHHHHHHhC--------CCCCCchhhhhh--hcchhHH
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYM--RL-ENYEQAAYYLEMTKN--------YPVKQDKDQCFE--ITDMPWY 239 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~--~~-g~~~~A~~~~~~al~--------~~~~~~~~~~~~--~~~~~~~ 239 (323)
++.|+..|++..+.+|.. .+++..+.+.. .. .+--+|+..+.++++ +.+.+....... ...+-..
T Consensus 265 ~~~a~~~le~L~~~~p~~--~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIH--DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 488999999999999975 34443333322 22 233467777777763 233332111100 0000001
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhh
Q psy11738 240 QRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 302 (323)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 302 (323)
+ +.-+. ..++|+-|+...++|+...|.. -..|+.|+.||..+|+++.|+-.+...-
T Consensus 343 Q---a~FLl---~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 Q---TNFLL---NRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp H---HHHHH---HTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred H---HHHHh---ccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 11112 2689999999999999999998 4899999999999999999998877763
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.54 Score=41.44 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC-chhhhhhhcchhHHHHHHHH
Q psy11738 172 SYEEALKYFLEAEKQ-----HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ-DKDQCFEITDMPWYQRKIAN 245 (323)
Q Consensus 172 ~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~a~ 245 (323)
+|.+|.+.+.+.++- ++.....++.....+|..++++.++...|.+|......- .+... .+.+.++ .++.
T Consensus 114 ~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i--~a~i~~~-~Gi~- 189 (394)
T 3txn_A 114 LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV--QGALDLQ-SGIL- 189 (394)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH--HHHHHHH-HHHH-
T ss_pred hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH--HHHHHHH-hhHH-
Confidence 448888888887763 222333667778888999999999999999886552110 00000 1111111 1111
Q ss_pred HhhccC-CCCcHHHHHHHHHHHHhhCCcch----hhhhHHHHHHHHHhcCH
Q psy11738 246 AIFDTL-PTSSYEEALKYFLEAEKQHPLFY----SQNVLMLGKTYMRLENY 291 (323)
Q Consensus 246 ~~~~~~-~~~~~~~Al~~~~~a~~~~p~~~----~~~~~~lg~~y~~~g~~ 291 (323)
.. ..++|.+|..+|-.++....... .....+++.|-+..++.
T Consensus 190 ----~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 190 ----HAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp ----HHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred ----HHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 12 26789999988888864432210 12345566666666654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.28 Score=43.91 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=74.8
Q ss_pred CChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHcCCHHHHH
Q psy11738 135 DDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--HPLFYSQNVLMLGKTYMRLENYEQAA 212 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~y~~~g~~~~A~ 212 (323)
.-..++..+|.+++..|++ ++|.+.|.++... .++.....++.+..++...+++..+.
T Consensus 129 e~~~~~~~la~~~~~~Gd~--------------------~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDK--------------------DNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCC--------------------TTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3445788999999999887 9999999998875 44444577888889999999999999
Q ss_pred HHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCC
Q psy11738 213 YYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHP 271 (323)
Q Consensus 213 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p 271 (323)
.+++++..+.....+... ...+..+. ++ -....++|.+|-..|..+.....
T Consensus 189 ~~~~ka~~~~~~~~d~~~--~~~lk~~~-gl-----~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWER--RNRYKTYY-GI-----HCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHHTTCCCTHH--HHHHHHHH-HH-----GGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhhcCCCHHH--HHHHHHHH-HH-----HHHHhChHHHHHHHHHHHhccCC
Confidence 999999655322221111 00111111 11 11236889999999998876543
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.3 Score=44.51 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLML 198 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l 198 (323)
...|..+|.+|+.+.|++...+..||.+....++. -+|+-+|-+++....-+ +.+..+|
T Consensus 168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~--------------------l~a~y~y~rsl~~~~Pf-~~a~~nL 226 (497)
T 1ya0_A 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH--------------------LTTIFYYCRSIAVKFPF-PAASTNL 226 (497)
T ss_dssp HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHSSSBCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHhccccc--------------------HHHHHHHHHHHhcCCCC-hhHHHHH
Confidence 34899999999999999999999999998887655 77888888888765555 5777777
Q ss_pred HHHHHH
Q psy11738 199 GKTYMR 204 (323)
Q Consensus 199 g~~y~~ 204 (323)
...+..
T Consensus 227 ~~~f~~ 232 (497)
T 1ya0_A 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.70 E-value=1.8 Score=33.13 Aligned_cols=102 Identities=10% Similarity=-0.013 Sum_probs=70.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCC
Q psy11738 89 HEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTL 168 (323)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
-|.+++....+++.+...|.+. .+ +-....++ ...+.+.-..|+....
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~----------R~---Lf~L~~lN--T~Ts~YYk~LCy~klK----------------- 76 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYT----------RA---LFHLHKLN--TCTSKYYESLCYKKKK----------------- 76 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHH----------HH---HHHHHTCC--BHHHHHHHHHHHHHTT-----------------
T ss_pred ccCChHHHhhhhhhhhhcchHh----------HH---HHHHHhcc--hHHHHHHHHHHHHHHH-----------------
Confidence 3555577788899999888877 33 33344443 4445566666776665
Q ss_pred CCCCHHHHHHHHHHHHhc-----------------CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 169 PTSSYEEALKYFLEAEKQ-----------------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 169 ~~~~~~~A~~~~~~al~~-----------------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
+|..|+..+++.++- +|.+....+..+|..+.+.|+-++|+.++......+|--
T Consensus 77 ---dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 77 ---DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp ---CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred ---HHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence 459999999999832 344432346678999999999999999999988776543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.93 Score=37.46 Aligned_cols=112 Identities=14% Similarity=0.004 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhc
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFD 249 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 249 (323)
.++.++|+......++-+|.+ +.....|...++-.|+++.|..-++.+.+++|.......
T Consensus 10 ~g~L~~al~~~~~~VR~~P~d-a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~------------------- 69 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKD-ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS------------------- 69 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH-------------------
T ss_pred CCCHHHHHHHHHHHHHhCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHH-------------------
Confidence 456699999999999999998 788899999999999999999999999999887543211
Q ss_pred cCCCCcHHHHHH--HHHHHHhh---------CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 250 TLPTSSYEEALK--YFLEAEKQ---------HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 250 ~~~~~~~~~Al~--~~~~a~~~---------~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.|..+|. .++..+-. .|.. ......-+......|+.++|...-.+|++..|.
T Consensus 70 -----~yr~lI~aE~~R~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 70 -----QLRHLVKAAQARKDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp -----HHHHHHHHHHHHHHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -----HHHHHHHHHHHHHHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 0111211 11111110 1222 223445567777889999999999999887654
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.3 Score=44.54 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCC-CChhHHHHHHHHH
Q psy11738 253 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNY-PAVQEATKLLEKA 317 (323)
Q Consensus 253 ~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~-~~~~~~~~~l~~~ 317 (323)
...+..|..+|.+|..+.|+. +..+..||.+....|+.-+|+.+|.+++-. .|...+.+-|...
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~-G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSN-GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTB-SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 346789999999999999999 799999999999999999999999999977 7777776555443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.41 E-value=2.7 Score=38.32 Aligned_cols=133 Identities=10% Similarity=0.030 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhc-----------cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc-----cCCCC
Q psy11738 73 QLILSAYFLVYNAL-----------PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE-----LKPDD 136 (323)
Q Consensus 73 ~~~~~A~~~~~~al-----------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~-----l~p~~ 136 (323)
+.+++|..+...++ .+|+-++.+|+.++.++...|...............+..+..+++ .|+..
T Consensus 150 k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 150 KELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 45677777766554 125556667777777776666654211111111112222333332 23332
Q ss_pred h-hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHcCCHH
Q psy11738 137 S-TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRLENYE 209 (323)
Q Consensus 137 ~-~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~y~~~g~~~ 209 (323)
. ..+..+-+.|...+.+ +.|.+...++. .|.. ....++++|.++.-.++|.
T Consensus 230 qa~l~nllLRnYL~~~~y--------------------~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~ 287 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEV--------------------DSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYS 287 (523)
T ss_dssp HHHHHHHHHHHHHHSSCS--------------------TTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHccCcH--------------------HHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHH
Confidence 2 2344455566665544 88999999885 3321 1244777899999999999
Q ss_pred HHHHHHHHHhCCCCCCch
Q psy11738 210 QAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 210 ~A~~~~~~al~~~~~~~~ 227 (323)
+|.+++..|+...|.+..
T Consensus 288 eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 288 TANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHhCCcchh
Confidence 999999999999887654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.4 Score=43.16 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=26.6
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHHhcccC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS----E----YKEDVEIIWRLVRVKYNLATHS 63 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~----~----~~~~~~~~~~la~~y~~~~~~~ 63 (323)
...+.+.++..+ ..|++++|++.+..+ + .+....+...+...+...+++.
T Consensus 16 ~~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~ 73 (445)
T 4b4t_P 16 ILKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWD 73 (445)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHH
Confidence 355667777776 458999999877443 2 3345677778888888887653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=3.9 Score=35.84 Aligned_cols=108 Identities=14% Similarity=0.011 Sum_probs=74.2
Q ss_pred HHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHH--------------HHHHHHhhccCCCCcHHHHHHHHHHHH
Q psy11738 202 YMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQ--------------RKIANAIFDTLPTSSYEEALKYFLEAE 267 (323)
Q Consensus 202 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~Al~~~~~a~ 267 (323)
....|+.+.|...+++|+.+-........ ....|.. ...+...+ ..|++.+++..+..++
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~---~~~~w~~~~r~~l~~~~~~a~~~~~~~~l---~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDL---RDFQFVEPFATALVEDKVLAHTAKAEAEI---ACGRASAVIAELEALT 198 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGG---TTSTTHHHHHHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHH
Confidence 34568889999999999888433221100 0000110 01122222 2689999999999999
Q ss_pred hhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh-------hCCCChhHHHHHHHH
Q psy11738 268 KQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT-------KNYPAVQEATKLLEK 316 (323)
Q Consensus 268 ~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-------l~~~~~~~~~~~l~~ 316 (323)
..+|-. ...+..|-.+|...|+..+|...|++. +-+.|..+...+...
T Consensus 199 ~~~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 199 FEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 999987 788999999999999999999887765 456777776655544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.31 E-value=3.8 Score=39.27 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=14.7
Q ss_pred CChhHHHHHhhHHHHhcCC
Q psy11738 135 DDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 135 ~~~~~~~~lg~~~~~~~~~ 153 (323)
+++..|..+|..+...+++
T Consensus 679 ~~~~~W~~la~~al~~~~~ 697 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNF 697 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCH
T ss_pred CcHhHHHHHHHHHHHcCCH
Confidence 5677888888888887766
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.92 E-value=3.4 Score=31.78 Aligned_cols=44 Identities=14% Similarity=-0.052 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 171 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 171 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
|+++.|.+..+.. ++ ...|..||......|+++-|..+|.++-.
T Consensus 19 g~l~~A~e~a~~l-----~~-~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----ND-SITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp TCHHHHHHHHHHH-----CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHh-----CC-HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3458888776554 33 47799999999999999999999998744
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.62 E-value=0.46 Score=43.25 Aligned_cols=77 Identities=10% Similarity=0.092 Sum_probs=52.0
Q ss_pred CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q psy11738 187 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 266 (323)
Q Consensus 187 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a 266 (323)
|+..-+..+..+-..|...+.+++|.....++. .|.....
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~s-------------------------------------- 265 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVS-------------------------------------- 265 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSC--------------------------------------
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCC--------------------------------------
Confidence 444324567778899999999999999999884 3332100
Q ss_pred HhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 267 EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 267 ~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
++.. ...++++|.++...++|.+|..++..|+...|.
T Consensus 266 ---n~q~-~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 266 ---SSLE-ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp ---HHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred ---HHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 0011 345677788888888888888888887776543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.76 E-value=2.5 Score=34.86 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD 152 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 152 (323)
+.+++|+......++.+|.|+.....+..++...|+++ .|...++-+.+++|+....-..+..+
T Consensus 11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~----------RA~~QL~~~a~l~p~~~~~a~~yr~l------ 74 (273)
T 1zbp_A 11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFE----------RADEQLMQSIKLFPEYLPGASQLRHL------ 74 (273)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCGGGHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHHhCchhhHHHHHHHHH------
Confidence 35788999999999999999999999999999999999 88899999999999874433221111
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--CCC---ch-h-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ--HPL---FY-S-QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQ 225 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~---~~-~-~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 225 (323)
=.|...=...+.- .|. .+ + ...+.-+......|+.++|...-..|+...|..
T Consensus 75 ---------------------I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 75 ---------------------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ---------------------HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ---------------------HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111111222221 111 11 1 234444666778899999999999998887665
Q ss_pred c
Q psy11738 226 D 226 (323)
Q Consensus 226 ~ 226 (323)
.
T Consensus 134 ~ 134 (273)
T 1zbp_A 134 G 134 (273)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.74 E-value=5 Score=30.87 Aligned_cols=96 Identities=5% Similarity=-0.086 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC
Q psy11738 74 LILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM 153 (323)
Q Consensus 74 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 153 (323)
+++.|.+..+.. ++...|..+|..-...|++. -|.++|.++-..+ .+..+|...|+.
T Consensus 20 ~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~----------lAe~cy~~~~D~~--------~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 20 NLDAALDEAKKL-----NDSITWERLIQEALAQGNAS----------LAEMIYQTQHSFD--------KLSFLYLVTGDV 76 (177)
T ss_dssp CHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHH----------HHHHHHHHTTCHH--------HHHHHHHHHTCH
T ss_pred CHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChH----------HHHHHHHHhCCHH--------HHHHHHHHhCCH
Confidence 445677776654 46667888888888888777 6666666654221 333334444432
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 154 PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
+-+....+.-+...+ +.....++..+|+++++++.|.+.
T Consensus 77 ---------------------e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 ---------------------NKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp ---------------------HHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 222222222232333 223456677889999999988664
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.45 E-value=10 Score=33.22 Aligned_cols=168 Identities=10% Similarity=0.115 Sum_probs=95.1
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhCC-----CCCC--HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESSE-----YKED--VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~~-----~~~~--~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
..+++.|..+...|++++-..++...+ .|.. +...-.+-..+... ..+ .+....-..+++++.+.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~---~~~--~~~~~~~~~~~~~~a~~--- 91 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDM---DAG--TGIEVQLCKDCIEWAKQ--- 91 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTS---CCC--HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcC---CCc--HHHHHHHHHHHHHHHHH---
Confidence 446888999999999999999998762 1111 22222222222221 221 23333334444444442
Q ss_pred CCCCcHH--HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHc----cCCCC--hhHHHHHhhHHHHhcCCcHHHHH
Q psy11738 88 QHEDHYA--IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIE----LKPDD--STTLFMLGMWCFEITDMPWYQRK 159 (323)
Q Consensus 88 ~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~----l~p~~--~~~~~~lg~~~~~~~~~~~~~~~ 159 (323)
-.-..-. .-..+|.+|...|++. +|.+.+.+..+ ++... .+.+..-..+|...+++
T Consensus 92 ~~r~flr~~l~~kL~~l~~~~~~y~----------~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~------ 155 (394)
T 3txn_A 92 EKRTFLRQSLEARLIALYFDTALYT----------EALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL------ 155 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH------
Confidence 2211111 2237899999999998 44444444433 23221 12234445566666655
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcC------CCchhHHHHHHHHHHH-HcCCHHHHHHHHHHHhC
Q psy11738 160 IANAIFDTLPTSSYEEALKYFLEAEKQH------PLFYSQNVLMLGKTYM-RLENYEQAAYYLEMTKN 220 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~ 220 (323)
.++...+.+|.... |.--+.....-|..+. ..++|..|..+|-.+++
T Consensus 156 --------------~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 156 --------------PKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp --------------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 77777777776542 2211233555677788 89999999999988864
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.11 E-value=2.2 Score=38.09 Aligned_cols=121 Identities=8% Similarity=-0.001 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC---hhHHHHHhhHH
Q psy11738 71 KKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD---STTLFMLGMWC 147 (323)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~---~~~~~~lg~~~ 147 (323)
....+++.+..+++-..-+..-..++..+|.++...|++. .|.+.|.++....+.. .+.+..+-+++
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~----------~A~~~~~~~~~~~~~~~~kid~~l~~irl~ 178 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKD----------NAEKTLGKSLSKAISTGAKIDVMLTIARLG 178 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCT----------THHHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 4566777777776644445556667889999999999999 6777777777654432 34455556666
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---CCCch--hHHHHHHHHHHHHcCCHHHHHHHHHHHhCC
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ---HPLFY--SQNVLMLGKTYMRLENYEQAAYYLEMTKNY 221 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~--~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 221 (323)
...+++ ..+..++.++..+ .++.. .......|.++...++|..|-.+|-.++..
T Consensus 179 l~~~d~--------------------~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 179 FFYNDQ--------------------LYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHTCH--------------------HHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHhccH--------------------HHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 666665 7777788777654 22211 122445677788999999999999887654
|
| >1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1 | Back alignment and structure |
|---|
Probab=85.44 E-value=6.6 Score=26.56 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=20.7
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
....+.+..++.+|...=..|+|++|+.+|..
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~ 40 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQE 40 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34445556667777777677888888765544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.18 E-value=2.6 Score=36.98 Aligned_cols=50 Identities=12% Similarity=-0.000 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 170 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
.|++.+|+..+..++..+|-+ ...+..+-.+|...|+..+|+..|++...
T Consensus 184 ~g~~~~a~~~l~~~~~~~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477899999999999999997 68899999999999999999999988744
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=84.76 E-value=5.4 Score=38.18 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
+++|.+..+. .++ ...|..+|..+...|+++.|+.+|.++-.
T Consensus 668 ~~~A~~~~~~-----~~~-~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 668 LTLARDLLTD-----ESA-EMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHHTT-----CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHh-----hCc-HhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 3777766432 233 47799999999999999999999998743
|
| >2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=80.68 E-value=4.8 Score=26.61 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=20.9
Q ss_pred cchhhhHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 8 KTVSKVSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 8 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
....+.+..++.+|...=..|+|++|+.+|..
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~ 44 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKK 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33445555667777666677888888766555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 323 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 7e-04
Identities = 22/190 (11%), Positives = 50/190 (26%), Gaps = 30/190 (15%)
Query: 124 HHMNKAIELKPDDSTTLFMLGMWCF-------------EITDMPWYQRKIANAIFDTL-P 169
HH KA+ L P+ LG + + +
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 170 TSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229
+ A+ + A + P + L + +A
Sbjct: 250 QGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTA----------- 297
Query: 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLE 289
+ P + + N + EEA++ + +A + P ++ L +
Sbjct: 298 ---LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQG 353
Query: 290 NYEQAAYYLE 299
++A + +
Sbjct: 354 KLQEALMHYK 363
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.002
Identities = 26/216 (12%), Positives = 50/216 (23%), Gaps = 12/216 (5%)
Query: 85 ALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLG 144
Q D+ + L+ I + ++L+ H AI+ P + LG
Sbjct: 25 LWRQEPDNTGVLLLLSSIH----------FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74
Query: 145 MWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204
++ + P Q + +
Sbjct: 75 -NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 205 LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 264
L L + I P + +N A+ +F
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193
Query: 265 EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 300
+A P F + LG +++A
Sbjct: 194 KAVTLDPNFL-DAYINLGNVLKEARIFDRAVAAYLR 228
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.001
Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 11/155 (7%)
Query: 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT-KNYPVKQDKDQCF 231
++ AL F + H +G Y L+N +A +
Sbjct: 21 WKGALDAFSAVQDPHSRICFN----IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR 76
Query: 232 EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENY 291
+ + +A L + Q LF + + + Y + E +
Sbjct: 77 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 136
Query: 292 EQAAYYLEM------TKNYPAVQEATKLLEKAKSY 320
++A L + + + +A + + K K Y
Sbjct: 137 KKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLY 171
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.86 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.82 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.74 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.73 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.71 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.69 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.64 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.62 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.6 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.53 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.52 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.5 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.49 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.48 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.47 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.45 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.42 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.38 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.37 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.35 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.34 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.33 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.21 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.14 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.08 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.07 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.99 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.93 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.84 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.72 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.43 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.33 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.29 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.26 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 92.53 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.54 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 87.3 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 85.55 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 85.53 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 80.93 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-27 Score=210.70 Aligned_cols=271 Identities=13% Similarity=0.111 Sum_probs=214.1
Q ss_pred HHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHH
Q psy11738 18 LKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAI 95 (323)
Q Consensus 18 ~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 95 (323)
|+.|..++..|+|++|+..++++ .+|++++++..+|.+|..+|+ +++|+.+++++++++|+++.+
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~a 69 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-------------LDRSAHFSTLAIKQNPLLAEA 69 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHH
Confidence 56788999999999999999987 599999999999999998885 467999999999999999999
Q ss_pred HHHHHHHHHHhhcccchHHH------------------------------------------------------------
Q psy11738 96 HKWLAVILNEKATLEGTKAR------------------------------------------------------------ 115 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 115 (323)
+..+|.++..+|++..+...
T Consensus 70 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (388)
T d1w3ba_ 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999987543210
Q ss_pred --------------------------------HHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHH
Q psy11738 116 --------------------------------IQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANA 163 (323)
Q Consensus 116 --------------------------------~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 163 (323)
.+...+|...+.++++++|+++.++..+|.++...+++......+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 229 (388)
T d1w3ba_ 150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred hhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHh
Confidence 112345678888999999999999999999988888774332221111
Q ss_pred hhcC--------------CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhh
Q psy11738 164 IFDT--------------LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229 (323)
Q Consensus 164 ~~~~--------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 229 (323)
.... ...|++++|+..|+++++++|++ +.++..+|.++...|++++|+..+++++...|.+....
T Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 308 (388)
T d1w3ba_ 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhh
Confidence 0000 13477888888888888888887 68888888888888888888888888888877765332
Q ss_pred hhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 230 CFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 230 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
. .++..+. ..|++++|+..|+++++++|++ +.+++.+|.+|..+|++++|+.+|++|++++|+..
T Consensus 309 ~-----------~l~~~~~---~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 373 (388)
T d1w3ba_ 309 N-----------NLANIKR---EQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp H-----------HHHHHHH---TTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred h-----------HHHHHHH---HCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 1 1222222 2689999999999999999998 79999999999999999999999999999988743
Q ss_pred -HHHHHHHH
Q psy11738 310 -ATKLLEKA 317 (323)
Q Consensus 310 -~~~~l~~~ 317 (323)
+...|-.+
T Consensus 374 ~a~~~lg~~ 382 (388)
T d1w3ba_ 374 DAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 33444443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.1e-27 Score=203.38 Aligned_cols=251 Identities=13% Similarity=0.060 Sum_probs=202.1
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
+.+..+.+|..++..|++++|+..++++ .+|+++++++.+|.+|...|+ +++|+.++.++++++|
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-------------~~~A~~~~~~al~~~p 84 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ-------------ELLAISALRRCLELKP 84 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------hHHHHHHHHhhhcccc
Confidence 4455689999999999999999999997 699999999999999999885 4679999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh--cCCc-HHHHHHHHHhhcC
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI--TDMP-WYQRKIANAIFDT 167 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~--~~~~-~~~~~~~~~~~~~ 167 (323)
+++.++..+|.++...|++. +|++.+.+++.++|................ +... .......
T Consensus 85 ~~~~~~~~la~~~~~~~~~~----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 148 (323)
T d1fcha_ 85 DNQTALMALAVSFTNESLQR----------QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS------ 148 (323)
T ss_dssp TCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH------
T ss_pred cccccccccccccccccccc----------ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHH------
Confidence 99999999999999999998 899999999999998765433222211111 0000 0000010
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHH
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~ 246 (323)
.+.+.+|+..|.++++++|+.. +.++..+|.++...|++++|+.+|++++..+|++..... .++..
T Consensus 149 --~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----------~lg~~ 215 (323)
T d1fcha_ 149 --DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN-----------KLGAT 215 (323)
T ss_dssp --HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----------HHHHH
T ss_pred --hhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchh-----------hhhhc
Confidence 1235899999999999999852 467889999999999999999999999999998764322 12222
Q ss_pred hhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 247 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 247 ~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
+.. .|++++|+..|.++++++|++ +.+++.+|.+|..+|++++|+.+|++|+++.|++.
T Consensus 216 ~~~---~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 216 LAN---GNQSEEAVAAYRRALELQPGY-IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 274 (323)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred ccc---cccchhHHHHHHHHHHHhhcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence 222 789999999999999999998 79999999999999999999999999999988743
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.1e-24 Score=188.42 Aligned_cols=223 Identities=17% Similarity=0.126 Sum_probs=199.1
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
..|.........|..+...|++++|+..+.++ .+|++++++..+|.++...|++ ++|+..+++++
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-------------~~A~~~~~~~~ 230 (388)
T d1w3ba_ 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF-------------DRAVAAYLRAL 230 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT-------------THHHHHHHHHH
T ss_pred cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccH-------------HHHHHHHHHhH
Confidence 34555667788889999999999999999987 5999999999999999988865 45899999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhc
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFD 166 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.++|..+..+..+|.++...|++. +|+..|+++++++|+++.++..+|.++...|++
T Consensus 231 ~~~~~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~------------- 287 (388)
T d1w3ba_ 231 SLSPNHAVVHGNLACVYYEQGLID----------LAIDTYRRAIELQPHFPDAYCNLANALKEKGSV------------- 287 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH-------------
T ss_pred HHhhhHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------------
Confidence 999999999999999999999998 899999999999999999999999999998766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHH
Q psy11738 167 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANA 246 (323)
Q Consensus 167 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~ 246 (323)
++|+..|++++...|.+ ..++..+|.++...|++++|+.+|+++++++|++..... .++..
T Consensus 288 -------~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----------~la~~ 348 (388)
T d1w3ba_ 288 -------AEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS-----------NLASV 348 (388)
T ss_dssp -------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH-----------HHHHH
T ss_pred -------HHHHHHHHhhhccCCcc-chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----------HHHHH
Confidence 99999999999999998 699999999999999999999999999999998754322 12233
Q ss_pred hhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcC
Q psy11738 247 IFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN 290 (323)
Q Consensus 247 ~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~ 290 (323)
+.. .|++++|+..|+++++++|++ +.++..||.+|..+||
T Consensus 349 ~~~---~g~~~~A~~~~~~al~l~P~~-~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 349 LQQ---QGKLQEALMHYKEAIRISPTF-ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHT---TTCCHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTCC
T ss_pred HHH---cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Confidence 332 789999999999999999998 8999999999999986
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=8.1e-24 Score=182.95 Aligned_cols=213 Identities=12% Similarity=0.059 Sum_probs=178.9
Q ss_pred CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhc-ccchHHHHHhHH
Q psy11738 42 YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKAT-LEGTKARIQQLE 120 (323)
Q Consensus 42 ~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 120 (323)
+|+..+++..+|.++...+ .+++|+..+++|++++|++..++..+|.++..++. ++
T Consensus 39 ~p~~~~a~~~~~~~~~~~e-------------~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~---------- 95 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDE-------------RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH---------- 95 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTC-------------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH----------
T ss_pred CHHHHHHHHHHHHHHHhCC-------------chHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHH----------
Confidence 4555777777777776655 34779999999999999999999999999998875 56
Q ss_pred HHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q psy11738 121 TIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGK 200 (323)
Q Consensus 121 ~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~ 200 (323)
+|+.+++++++++|++..+|+.+|.++..+|++ ++|+..|.++++++|++ ..+|.++|.
T Consensus 96 eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~--------------------~eAl~~~~kal~~dp~n-~~a~~~~~~ 154 (315)
T d2h6fa1 96 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP--------------------SQELEFIADILNQDAKN-YHAWQHRQW 154 (315)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC--------------------TTHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccH--------------------HHHHHHHhhhhhhhhcc-hHHHHHHHH
Confidence 899999999999999999999999999999877 99999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhH
Q psy11738 201 TYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 279 (323)
Q Consensus 201 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~ 279 (323)
++..+|++++|+++|++++.++|.+..... .+..+.... .....+.+++|+..+.+++.++|++ ..+|+
T Consensus 155 ~~~~~~~~~~Al~~~~~al~~~p~n~~a~~---------~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~-~~~~~ 224 (315)
T d2h6fa1 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWN---------QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-ESAWN 224 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHH---------HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-HHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHCCccHHHHH---------HHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc-hHHHH
Confidence 999999999999999999999999876532 222111111 1223456899999999999999998 79999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 280 MLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 280 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
.+|.++...| .+++...+.+++++.|...
T Consensus 225 ~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 225 YLKGILQDRG-LSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp HHHHHHTTTC-GGGCHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhcC-hHHHHHHHHHHHHhCCCcC
Confidence 9999876554 6888899999988877643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.4e-23 Score=175.69 Aligned_cols=225 Identities=13% Similarity=0.077 Sum_probs=180.4
Q ss_pred hccHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHH
Q psy11738 27 EQQFEEVNKMLESS------EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLA 100 (323)
Q Consensus 27 ~~~~~~A~~~~~~~------~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 100 (323)
..+++.|+..++.+ .++..+.+++.+|.+|...|+ +++|+..|+++++++|+++.+++.+|
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~-------------~~~A~~~~~~al~l~p~~~~a~~~lg 78 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL-------------RALARNDFSQALAIRPDMPEVFNYLG 78 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCC-------------HHHHHHHHHHhhccCCCCHHHHhhhc
Confidence 44555555555443 244567789999999999885 57799999999999999999999999
Q ss_pred HHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHH
Q psy11738 101 VILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 180 (323)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 180 (323)
.++..+|++. +|++.|+++++++|+++.++..+|.++...|++ ++|+..|
T Consensus 79 ~~~~~~g~~~----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~--------------------~~A~~~~ 128 (259)
T d1xnfa_ 79 IYLTQAGNFD----------AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD--------------------KLAQDDL 128 (259)
T ss_dssp HHHHHTTCHH----------HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH--------------------HHHHHHH
T ss_pred hHHHHHHHHH----------HhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhH--------------------HHHHHHH
Confidence 9999999999 899999999999999999999999999998765 9999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhcc-CCCCcHHHH
Q psy11738 181 LEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDT-LPTSSYEEA 259 (323)
Q Consensus 181 ~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~A 259 (323)
+++++++|++ ......++.++...+..+.+..........++....... .....+. ...+.++.+
T Consensus 129 ~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 194 (259)
T d1xnfa_ 129 LAFYQDDPND-PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-------------VEFYLGNISEQTLMERL 194 (259)
T ss_dssp HHHHHHCTTC-HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-------------HHHHTTSSCHHHHHHHH
T ss_pred HHHHhhcccc-HHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-------------HHHHHHHHHHHHHHHHH
Confidence 9999999997 578888899999998887777777666666554432111 0000111 112346677
Q ss_pred HHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH
Q psy11738 260 LKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE 309 (323)
Q Consensus 260 l~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 309 (323)
...+..+....|.. ..+++.+|.+|..+|++++|+.+|++|+..+|++-
T Consensus 195 ~~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 195 KADATDNTSLAEHL-SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHCCSHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHhhhcCccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 77777777888877 68899999999999999999999999999999753
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.1e-22 Score=174.01 Aligned_cols=236 Identities=8% Similarity=-0.004 Sum_probs=191.0
Q ss_pred hhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhcc
Q psy11738 10 VSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALP 87 (323)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 87 (323)
.|+-.+..--.+..+.+.+++++|+.+++++ .+|.+..+|...|.++..++. .+++|+.+++++++
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~------------~~~eal~~~~~al~ 106 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK------------DLHEEMNYITAIIE 106 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCc------------CHHHHHHHHHHHHH
Confidence 3444444445677777889999999999998 599999999999999988774 25679999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcC
Q psy11738 88 QHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDT 167 (323)
Q Consensus 88 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 167 (323)
++|++..++.++|.++..+|++. +|++.+.++++++|++..+|..+|.++...+++
T Consensus 107 ~~p~~~~a~~~~~~~~~~l~~~~----------eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~-------------- 162 (315)
T d2h6fa1 107 EQPKNYQVWHHRRVLVEWLRDPS----------QELEFIADILNQDAKNYHAWQHRQWVIQEFKLW-------------- 162 (315)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCT----------THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC--------------
T ss_pred HHHhhhhHHHHHhHHHHhhccHH----------HHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhh--------------
Confidence 99999999999999999999999 899999999999999999999999999999877
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCC------HHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHH
Q psy11738 168 LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLEN------YEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQR 241 (323)
Q Consensus 168 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 241 (323)
++|+.+|+++++++|++ ..+|.++|.++...+. +++|+..+.++++++|.+..... ..
T Consensus 163 ------~~Al~~~~~al~~~p~n-~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~---------~l 226 (315)
T d2h6fa1 163 ------DNELQYVDQLLKEDVRN-NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN---------YL 226 (315)
T ss_dssp ------TTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHH---------HH
T ss_pred ------HHHHHHHHHHHHHCCcc-HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHH---------HH
Confidence 99999999999999998 6999999999998887 68999999999999999865422 11
Q ss_pred HHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch-hhhhHHHHHHHHHh--cCHHHHHHHHHHhhC
Q psy11738 242 KIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-SQNVLMLGKTYMRL--ENYEQAAYYLEMTKN 303 (323)
Q Consensus 242 ~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~-~~~~~~lg~~y~~~--g~~~~A~~~~~~al~ 303 (323)
. . ++. .....++...+.+++++.|+.. ...+..++.+|... ++.+.+...+.++++
T Consensus 227 ~--~-ll~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 227 K--G-ILQ---DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp H--H-HHT---TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H--H-HHH---hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 1 111 2335678888888988888641 23456677777643 444445555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.5e-21 Score=168.53 Aligned_cols=206 Identities=14% Similarity=0.084 Sum_probs=172.9
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
+.+..+..|..+...|+ +++|+..|+++++.+|+++.++..+|.++...|++. +|+.
T Consensus 18 ~~~~~~~~g~~~~~~g~-------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~----------~A~~ 74 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGD-------------LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL----------LAIS 74 (323)
T ss_dssp TCSSHHHHHHHHHHTTC-------------HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH----------HHHH
T ss_pred chHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH----------HHHH
Confidence 33445788999988885 577999999999999999999999999999999999 8999
Q ss_pred HHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHH----------
Q psy11738 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN---------- 194 (323)
Q Consensus 125 ~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---------- 194 (323)
+|.++++++|+++..+..+|.++...|++ ++|+..+++++.++|+. ...
T Consensus 75 ~~~~al~~~p~~~~~~~~la~~~~~~~~~--------------------~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 133 (323)
T d1fcha_ 75 ALRRCLELKPDNQTALMALAVSFTNESLQ--------------------RQACEILRDWLRYTPAY-AHLVTPAEEGAGG 133 (323)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHTSTTT-GGGCC--------
T ss_pred HHHhhhccccccccccccccccccccccc--------------------cccccchhhHHHhccch-HHHHHhhhhhhhh
Confidence 99999999999999999999999998765 99999999999999875 221
Q ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh
Q psy11738 195 -----VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ 269 (323)
Q Consensus 195 -----~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~ 269 (323)
.......+...+.+.+|+..|++++.++|....... ...++..+.. .|++++|+..|++++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~---------~~~l~~~~~~---~~~~~~A~~~~~~al~~ 201 (323)
T d1fcha_ 134 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV---------QCGLGVLFNL---SGEYDKAVDCFTAALSV 201 (323)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH---------HHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccccc---------chhhHHHHHH---HHHHhhhhccccccccc
Confidence 111223455678899999999999999988754322 1112222222 68999999999999999
Q ss_pred CCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 270 HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 270 ~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
+|++ +.+++.+|.+|..+|++++|+.+|+++++++|+
T Consensus 202 ~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 238 (323)
T d1fcha_ 202 RPND-YLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238 (323)
T ss_dssp CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccc-ccchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence 9998 799999999999999999999999999999887
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.86 E-value=3.4e-21 Score=167.53 Aligned_cols=247 Identities=11% Similarity=-0.006 Sum_probs=188.7
Q ss_pred hhcc-HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHH
Q psy11738 26 EEQQ-FEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVI 102 (323)
Q Consensus 26 ~~~~-~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 102 (323)
..++ .++|+.++.++ .+|++.++|...+.++..++.... .....+.+++|+.+++++++.+|+++.+++.+|.+
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~---~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~ 116 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKS---PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcc---hHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHH
Confidence 3444 48999999987 599999999988988888876655 45678889999999999999999999999999999
Q ss_pred HHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHH-HHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q psy11738 103 LNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLF-MLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFL 181 (323)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 181 (323)
+...++.. ..+++..+.+++.++|.+..++. .+|.++...+. +++|+..++
T Consensus 117 ~~~~~~~~--------~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~Al~~~~ 168 (334)
T d1dcea1 117 LSRLPEPN--------WARELELCARFLEADERNFHCWDYRRFVAAQAAVA--------------------PAEELAFTD 168 (334)
T ss_dssp HHTCSSCC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC--------------------HHHHHHHHH
T ss_pred HHHhcccc--------HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccc--------------------cHHHHHHHH
Confidence 98887643 12788999999999999999865 56666665544 499999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh--h---hcchhHHHHH--------------
Q psy11738 182 EAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF--E---ITDMPWYQRK-------------- 242 (323)
Q Consensus 182 ~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~---~~~~~~~~~~-------------- 242 (323)
++++++|++ ..++.++|.++..+|++++|+..+++++.+.|........ . .....+....
T Consensus 169 ~~i~~~p~~-~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~ 247 (334)
T d1dcea1 169 SLITRNFSN-YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCEL 247 (334)
T ss_dssp TTTTTTCCC-HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCC
T ss_pred HHHHcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHH
Confidence 999999998 6999999999999999765544443333332222110000 0 0000000000
Q ss_pred HHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 243 IANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 243 ~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
++.... ..+++.+|+..+.+++..+|+. ..+++.+|.+|..+|++++|+.+|+++++++|..
T Consensus 248 l~~~~~---~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~ 309 (334)
T d1dcea1 248 SVEKST---VLQSELESCKELQELEPENKWC-LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 309 (334)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHH---HHhhHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence 000000 1467999999999999999998 7999999999999999999999999999999963
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=8.5e-20 Score=152.33 Aligned_cols=196 Identities=11% Similarity=-0.001 Sum_probs=158.6
Q ss_pred chhhhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhc
Q psy11738 9 TVSKVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNAL 86 (323)
Q Consensus 9 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 86 (323)
.++..+..++..|..++..|++++|+..++++ .+|++++++..+|.+|..+|+ +++|+.+|++++
T Consensus 32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~al 98 (259)
T d1xnfa_ 32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-------------FDAAYEAFDSVL 98 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH-------------HHHhhhhhhHHH
Confidence 45666777899999999999999999999998 599999999999999999885 467999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHH-------
Q psy11738 87 PQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRK------- 159 (323)
Q Consensus 87 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~------- 159 (323)
+++|+++.++..+|.++..+|++. +|+..|+++++++|++......++..+...+........
T Consensus 99 ~~~p~~~~a~~~lg~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 99 ELDPTYNYAHLNRGIALYYGGRDK----------LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHCTTCTHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHhhhhhhHHHHHHHHHHHhhHH----------HHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 999999999999999999999998 899999999999999999888888776665532111000
Q ss_pred --------HHHHhhcC-CCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 160 --------IANAIFDT-LPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 160 --------~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
+.....+. ...+.+..+...+..+..+.|.. ..+++++|.+|..+|++++|+.+|+++++.+|.+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 169 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHL-SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 00011111 11223466666666677777775 6889999999999999999999999999999987543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=5.8e-17 Score=140.35 Aligned_cols=208 Identities=6% Similarity=-0.060 Sum_probs=170.5
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcH
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPW 155 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 155 (323)
++|+.+++++++++|+++.++...+.++..++.........+...+|+.+++++++.+|+++.+|+.+|.++...+.
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~--- 122 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE--- 122 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS---
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc---
Confidence 67999999999999999999999999999988888777888888899999999999999999999999998877654
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHH-HHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhc
Q psy11738 156 YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN-VLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEIT 234 (323)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 234 (323)
+++++|+..+.++++++|.+ ..+ +..+|.++...|.+++|+.++++++.++|.+...... ++
T Consensus 123 ---------------~~~~~a~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~-l~ 185 (334)
T d1dcea1 123 ---------------PNWARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY-RS 185 (334)
T ss_dssp ---------------CCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH-HH
T ss_pred ---------------ccHHHHHHHHHHHHhhCchh-hhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHH-HH
Confidence 24599999999999999998 465 4577899999999999999999999999998665331 00
Q ss_pred chhH--------------------HHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHH
Q psy11738 235 DMPW--------------------YQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQA 294 (323)
Q Consensus 235 ~~~~--------------------~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A 294 (323)
.+.. .......... ..+.+++++..+.+++..+|.. ...+..+|.++...|++.+|
T Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~a~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF---FTDPNDQSAWFYHRWLLGRAEP-LFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHH---HHCSSCSHHHHHHHHHHSCCCC-SSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHH---HhcchhHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHhhHHHH
Confidence 0000 0000000011 0234567888899999999988 68888999999999999999
Q ss_pred HHHHHHhhCCCCh
Q psy11738 295 AYYLEMTKNYPAV 307 (323)
Q Consensus 295 ~~~~~~al~~~~~ 307 (323)
+..+.+++..+|.
T Consensus 262 ~~~~~~~~~~~p~ 274 (334)
T d1dcea1 262 CKELQELEPENKW 274 (334)
T ss_dssp HHHHHHHCTTCHH
T ss_pred HHHHHHHHhhCch
Confidence 9999999999987
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.73 E-value=2.8e-17 Score=124.86 Aligned_cols=133 Identities=11% Similarity=0.082 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 68 DADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
..++.++|++|+..++++++++|++++++.++|.++..++++....+..+...+|+..|+++++++|+++.+++++|.++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 34678899999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHH
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ 210 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~ 210 (323)
...|.+........ +.|++|+++|+++++++|++ ..++..|+.+....+.+.+
T Consensus 86 ~~~g~~~~~~~~~~---------~~~~~A~~~~~kal~l~P~~-~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 86 TSFAFLTPDETEAK---------HNFDLATQFFQQAVDEQPDN-THYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHHCCCHHHHH---------HHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTHHHHHHH
T ss_pred HHcccchhhHHHHH---------HhHHHhhhhhhcccccCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 98875421111111 13599999999999999998 6888888887644443333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.9e-16 Score=126.14 Aligned_cols=153 Identities=13% Similarity=0.158 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHH
Q psy11738 49 IWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNK 128 (323)
Q Consensus 49 ~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 128 (323)
+|..|..+...|+ +++|+..|.++ .|.++.+++++|.++..+|+++ +|+++|++
T Consensus 8 l~~~g~~~~~~~d-------------~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~----------~A~~~~~k 61 (192)
T d1hh8a_ 8 LWNEGVLAADKKD-------------WKGALDAFSAV---QDPHSRICFNIGCMYTILKNMT----------EAEKAFTR 61 (192)
T ss_dssp HHHHHHHHHHTTC-------------HHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHH----------HHHHHHHH
T ss_pred HHHHHHHHHHCCC-------------HHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCch----------hHHHHHHH
Confidence 4556777777774 56799999874 5668899999999999999999 89999999
Q ss_pred HHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch---------------hH
Q psy11738 129 AIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY---------------SQ 193 (323)
Q Consensus 129 al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~ 193 (323)
|++++|+++.+|+++|.++..+|++ ++|+..|++++...|.+. ..
T Consensus 62 Al~ldp~~~~a~~~~g~~~~~~g~~--------------------~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e 121 (192)
T d1hh8a_ 62 SINRDKHLAVAYFQRGMLYYQTEKY--------------------DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 121 (192)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred HHHHhhhhhhhHHHHHHHHHhhccH--------------------HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHH
Confidence 9999999999999999999998765 999999999998755431 26
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 194 NVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 194 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
+++++|.+|..+|++++|++.+++|+.+.|... ....+.|+..+.+.....|..
T Consensus 122 ~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~--------------------------~~~~~~Al~~~~~~~~~~~~~ 175 (192)
T d1hh8a_ 122 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR--------------------------HSKIDKAMECVWKQKLYEPVV 175 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG--------------------------GGHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc--------------------------hHHHHHHHHHHHhhhhCCccc
Confidence 688999999999999999999999999987642 223567777777777666643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.3e-16 Score=124.67 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHH
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEE 175 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
++..|..+...+++. +|++.|.+ +.|.++.+++++|.+|+.+|++ ++
T Consensus 8 l~~~g~~~~~~~d~~----------~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~--------------------~~ 54 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWK----------GALDAFSA---VQDPHSRICFNIGCMYTILKNM--------------------TE 54 (192)
T ss_dssp HHHHHHHHHHTTCHH----------HHHHHHHT---SSSCCHHHHHHHHHHHHHTTCH--------------------HH
T ss_pred HHHHHHHHHHCCCHH----------HHHHHHHh---cCCCCHHHHHHHHHHHHHcCCc--------------------hh
Confidence 456789999999998 78888875 5677899999999999998766 99
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCc
Q psy11738 176 ALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSS 255 (323)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 255 (323)
|+.+|++|++++|++ +.+++++|.+|.++|++++|+..|++|+...|.+.......++.
T Consensus 55 A~~~~~kAl~ldp~~-~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~-------------------- 113 (192)
T d1hh8a_ 55 AEKAFTRSINRDKHL-AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL-------------------- 113 (192)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB--------------------
T ss_pred HHHHHHHHHHHhhhh-hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhh--------------------
Confidence 999999999999998 79999999999999999999999999998877654321111100
Q ss_pred HHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 256 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 256 ~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
...+.. ..+++++|.+|..+|++++|+..+.+|+.+.|..
T Consensus 114 ------------~~~~~~-~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 114 ------------QFKLFA-CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp ------------CCEEEH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ------------hcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 001111 3567788888888888888888888888876663
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=2.8e-16 Score=133.47 Aligned_cols=245 Identities=12% Similarity=0.028 Sum_probs=168.9
Q ss_pred hHHHHHHhhhHHHhh-------------ccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHH
Q psy11738 13 VSEEFLKKSDDLFEE-------------QQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAY 79 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~-------------~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~ 79 (323)
++++++.+++..... ++|++|..+ +.+.|.+|...+++ ++|+
T Consensus 3 ~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~------------y~~aa~~y~~~~~~-------------~~A~ 57 (290)
T d1qqea_ 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADL------------CVQAATIYRLRKEL-------------NLAG 57 (290)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHH------------HHHHHHHHHHTTCT-------------HHHH
T ss_pred CHHHHHHHHHHhcCcchhHHHHhcCCccccHHHHHHH------------HHHHHHHHHHCcCH-------------HHHH
Confidence 355667777666653 356666654 44568888887755 5688
Q ss_pred HHHHhhccCC------CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC------hhHHHHHhhHH
Q psy11738 80 FLVYNALPQH------EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD------STTLFMLGMWC 147 (323)
Q Consensus 80 ~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~------~~~~~~lg~~~ 147 (323)
.+|++|+++. |..+..+..+|.+|..+|++. +|++++.+++++.+.. ..++..+|.++
T Consensus 58 ~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~----------~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 127 (290)
T d1qqea_ 58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV----------NAVDSLENAIQIFTHRGQFRRGANFKFELGEIL 127 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcH----------HHHHHHHHhhHHhhhcccchhHHHHHHHHHHhH
Confidence 8888888763 334567888999999999988 8889999999987765 34566667666
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCC
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF-----YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYP 222 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 222 (323)
... .+++++|+.+|++++++.+.. ...++..+|.+|..+|++++|+++|++++...
T Consensus 128 ~~~-------------------~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~ 188 (290)
T d1qqea_ 128 END-------------------LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (290)
T ss_dssp HHT-------------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhH-------------------HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence 442 135599999999999873221 23568999999999999999999999999998
Q ss_pred CCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhh-----hHHHHHHHHH--hcCHHHHH
Q psy11738 223 VKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQN-----VLMLGKTYMR--LENYEQAA 295 (323)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~-----~~~lg~~y~~--~g~~~~A~ 295 (323)
|....... . ...+....+...+. .+++..|...+.++.+++|.+ ... ...+..++.. .+.+++|+
T Consensus 189 ~~~~~~~~-~---~~~~~~~~~~~~l~---~~d~~~A~~~~~~~~~~~~~~-~~sre~~~l~~l~~a~~~~d~e~~~eai 260 (290)
T d1qqea_ 189 MGNRLSQW-S---LKDYFLKKGLCQLA---ATDAVAAARTLQEGQSEDPNF-ADSRESNFLKSLIDAVNEGDSEQLSEHC 260 (290)
T ss_dssp SSCTTTGG-G---HHHHHHHHHHHHHH---TTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHH
T ss_pred ccchhhhh-h---HHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCc-cchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 87754322 0 11111111111222 688999999999999999975 332 3445555554 45689999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHhhh
Q psy11738 296 YYLEMTKNYPAVQEATKLLEKAKSYL 321 (323)
Q Consensus 296 ~~~~~al~~~~~~~~~~~l~~~~~~~ 321 (323)
..|.++..++|.. ..+|.++++.+
T Consensus 261 ~~y~~~~~lD~~~--~~~L~~~k~~l 284 (290)
T d1qqea_ 261 KEFDNFMRLDKWK--ITILNKIKESI 284 (290)
T ss_dssp HHHTTSSCCCHHH--HHHHHHHHHHH
T ss_pred HHHHHHhhcCHHH--HHHHHHHHHhh
Confidence 9999999997643 34677777665
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.7e-15 Score=130.33 Aligned_cols=262 Identities=14% Similarity=0.026 Sum_probs=186.2
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCC-----HHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHh
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKED-----VEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYN 84 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~-----~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 84 (323)
..++-...+|..++..|++++|+.+++++ ..|.+ +.++..+|.+|...|+ +++|+..+++
T Consensus 10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~ 76 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE-------------LTRSLALMQQ 76 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC-------------HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCC-------------HHHHHHHHHH
Confidence 34455566899999999999999999986 45554 4567788888888885 4668999998
Q ss_pred hccCCCCc------HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCC--------ChhHHHHHhhHHHHh
Q psy11738 85 ALPQHEDH------YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPD--------DSTTLFMLGMWCFEI 150 (323)
Q Consensus 85 al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~--------~~~~~~~lg~~~~~~ 150 (323)
++++.|.. ..++..++.++...+++. .+...+.+++.+.+. ....+..+|.++...
T Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 146 (366)
T d1hz4a_ 77 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQ----------TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 146 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh
Confidence 88876543 345566777777777777 666777777665322 234677789999888
Q ss_pred cCCcHHHHHHHHHhhcC-------------------CCCCCHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHc
Q psy11738 151 TDMPWYQRKIANAIFDT-------------------LPTSSYEEALKYFLEAEKQHPLF------YSQNVLMLGKTYMRL 205 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~lg~~y~~~ 205 (323)
|++......+....... ...+.+..+...+.++..+.+.. ...++..+|.++...
T Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 87643322222111100 12356788888888888763321 124577789999999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhh------CCcchhhhhH
Q psy11738 206 ENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ------HPLFYSQNVL 279 (323)
Q Consensus 206 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~------~p~~~~~~~~ 279 (323)
|++++|..++++++...|.+....... ...++..++. .|++++|+..+.+++.. .|.. ..++.
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~ 295 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQ-------WRNIARAQIL---LGEFEPAEIVLEELNENARSLRLMSDL-NRNLL 295 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHH-------HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHH
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHH-------HHHHHHHHHH---cCCHHHHHHHHHHHHHHHhhcccChHH-HHHHH
Confidence 999999999999999988765432211 1122333332 68999999999998854 3444 57899
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 280 MLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 280 ~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.+|.+|...|++++|+.++++|+++.+.
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.4e-16 Score=114.24 Aligned_cols=112 Identities=9% Similarity=-0.032 Sum_probs=105.2
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCC
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHE 90 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 90 (323)
.++++..+|+.++..|+|++|+..++++ .+|.++.++..+|.+|..+|+ +++|+..++++++++|
T Consensus 2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~-------------~~~A~~~~~~al~~~p 68 (117)
T d1elwa_ 2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD-------------YQKAYEDGCKTVDLKP 68 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccccc-------------ccccchhhhhHHHhcc
Confidence 5678899999999999999999999998 599999999999999999885 4679999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHH
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWC 147 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~ 147 (323)
+++.+++++|.++..+|++. +|+..|+++++++|+++.++..++++.
T Consensus 69 ~~~~~~~~~g~~~~~~~~~~----------~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 69 DWGKGYSRKAAALEFLNRFE----------EAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp TCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999999 899999999999999999999998763
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=8.3e-16 Score=112.17 Aligned_cols=103 Identities=12% Similarity=0.005 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHH
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE 174 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
-+...|..+...|++. +|+..|+++++++|+++.+|..+|.++...|++ +
T Consensus 5 ~l~~~g~~~~~~g~~~----------eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--------------------~ 54 (117)
T d1elwa_ 5 ELKEKGNKALSVGNID----------DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY--------------------Q 54 (117)
T ss_dssp HHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--------------------H
T ss_pred HHHHHHHHHHHcCCHH----------HHHHHHHHHHhcCCcchhhhhcccccccccccc--------------------c
Confidence 3456788899999998 899999999999999999999999999998766 9
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
+|+..|.++++++|++ +.+++++|.++..+|++++|+.+|+++++++|++...
T Consensus 55 ~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 107 (117)
T d1elwa_ 55 KAYEDGCKTVDLKPDW-GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 107 (117)
T ss_dssp HHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred ccchhhhhHHHhccch-hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999998 6999999999999999999999999999999998653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.8e-15 Score=116.57 Aligned_cols=123 Identities=10% Similarity=0.001 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHH
Q psy11738 48 IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMN 127 (323)
Q Consensus 48 ~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 127 (323)
.+...|..|+..| +|++|+.+|+++++++|+++.++..+|.++..+|++. +|+..|+
T Consensus 12 ~l~~~gn~~~~~~-------------~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~----------~A~~~~~ 68 (159)
T d1a17a_ 12 ELKTQANDYFKAK-------------DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG----------YALGDAT 68 (159)
T ss_dssp HHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHH----------HHHHHHH
T ss_pred HHHHHHHHHHHcC-------------CHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccc----------hHHHHHH
Confidence 3445566777666 4577999999999999999999999999999999998 8889999
Q ss_pred HHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH--Hc
Q psy11738 128 KAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM--RL 205 (323)
Q Consensus 128 ~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~--~~ 205 (323)
++++++|++..+++.+|.++..+|++ ++|+.+|+++++++|++ +.++..++.+.. ..
T Consensus 69 kal~~~p~~~~a~~~~g~~~~~~g~~--------------------~eA~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~ 127 (159)
T d1a17a_ 69 RAIELDKKYIKGYYRRAASNMALGKF--------------------RAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQ 127 (159)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHcccchHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999888765 99999999999999998 688777776643 44
Q ss_pred CCHHHHHHH
Q psy11738 206 ENYEQAAYY 214 (323)
Q Consensus 206 g~~~~A~~~ 214 (323)
+.+++|+..
T Consensus 128 ~~~~~a~~~ 136 (159)
T d1a17a_ 128 KAFERAIAG 136 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 446666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7e-16 Score=114.46 Aligned_cols=122 Identities=17% Similarity=0.226 Sum_probs=104.3
Q ss_pred hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11738 138 TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEM 217 (323)
Q Consensus 138 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 217 (323)
..+..+|..++..|++ ++|+.+|.++++++|++ +.++.++|.+|.++|++++|+..+++
T Consensus 5 ~~~k~~G~~~~~~~~y--------------------~~Ai~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (128)
T d1elra_ 5 LKEKELGNDAYKKKDF--------------------DTALKHYDKAKELDPTN-MTYITNQAAVYFEKGDYNKCRELCEK 63 (128)
T ss_dssp HHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhCccc-HHHHHhHHHHHHHcCchHHHHHHHHH
Confidence 3456789988888655 99999999999999998 69999999999999999999999999
Q ss_pred HhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHH
Q psy11738 218 TKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYY 297 (323)
Q Consensus 218 al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~ 297 (323)
+++++|.+.... +.. ..+++.+|.++..++++++|+.+
T Consensus 64 al~l~~~~~~~~-----------------------------------------~~~-a~~~~~lg~~~~~~~~~~~A~~~ 101 (128)
T d1elra_ 64 AIEVGRENREDY-----------------------------------------RQI-AKAYARIGNSYFKEEKYKDAIHF 101 (128)
T ss_dssp HHHHHHHSTTCH-----------------------------------------HHH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhCcccHHHH-----------------------------------------HHH-HHHHHHHHHHHHHhCCHHHHHHH
Confidence 999877654321 012 46788999999999999999999
Q ss_pred HHHhhCCCChhHHHHHHHHHHhhhc
Q psy11738 298 LEMTKNYPAVQEATKLLEKAKSYLK 322 (323)
Q Consensus 298 ~~~al~~~~~~~~~~~l~~~~~~~~ 322 (323)
|++++..+|+.+....+.++.+.++
T Consensus 102 ~~kal~~~~~~~~~~~l~~~~k~lk 126 (128)
T d1elra_ 102 YNKSLAEHRTPDVLKKCQQAEKILK 126 (128)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 9999999999888888888887765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=1.9e-15 Score=120.65 Aligned_cols=105 Identities=15% Similarity=0.072 Sum_probs=97.6
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
+++.+...|..+...|++. +|+.+|.+|++++|+++.+|.++|.+|...|++
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~----------~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~------------------ 54 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYP----------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQP------------------ 54 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH------------------
T ss_pred hHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhh------------------
Confidence 4566788999999999999 999999999999999999999999999998766
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.+|++|++++|++ +.+|+++|.+|..+|++++|+.+|++++.++|.+..
T Consensus 55 --~~Ai~~~~~al~l~p~~-~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 55 --EQALADCRRALELDGQS-VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp --HHHHHHHHHHTTSCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --hhhhHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 99999999999999998 699999999999999999999999999999886643
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.60 E-value=7.6e-15 Score=111.12 Aligned_cols=123 Identities=19% Similarity=0.154 Sum_probs=107.7
Q ss_pred hhHHHhhccHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHH
Q psy11738 21 SDDLFEEQQFEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKW 98 (323)
Q Consensus 21 a~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 98 (323)
+..+-+.+.|++|+..++++ .+|++++++..+|.++..++++.. ..+..+.+++|+..|+++++++|+++.++++
T Consensus 4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~---~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~ 80 (145)
T d1zu2a1 4 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS---ISDAKQMIQEAITKFEEALLIDPKKDEAVWC 80 (145)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHhcchhhHHHhh
Confidence 44566788999999999998 699999999999999999998776 3456788999999999999999999999999
Q ss_pred HHHHHHHhhcccchH-HHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH
Q psy11738 99 LAVILNEKATLEGTK-ARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 99 ~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
+|.+|..+|++.+.. .......+|.++|+++++++|++..++..|+.+
T Consensus 81 lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 81 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence 999999998875433 334567789999999999999999999999977
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.2e-16 Score=145.91 Aligned_cols=208 Identities=11% Similarity=-0.017 Sum_probs=121.8
Q ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhH----------
Q psy11738 77 SAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMW---------- 146 (323)
Q Consensus 77 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~---------- 146 (323)
+|++++++|+.+.|+.++++..+|.++...+++. +| |+++|.++|+...++...+.+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~----------ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie 70 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ----------DL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQIT 70 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHH----------HH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHH----------HH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999998888776 33 788888888765543222211
Q ss_pred -HHHhcC------CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 147 -CFEITD------MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 147 -~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
+..... .......+...+. ...+.|+.|+..+.+++.++|++ ..++.++|.++...|++++|+..+++++
T Consensus 71 ~~r~~~k~~~~~~~~~~~~~~~~~l~--~a~~~Y~~ai~~l~~~~~l~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al 147 (497)
T d1ya0a1 71 TLQGQAKNRANPNRSEVQANLSLFLE--AASGFYTQLLQELCTVFNVDLPC-RVKSSQLGIISNKQTHTSAIVKPQSSSC 147 (497)
T ss_dssp HHHHHHSCSSCTTTTHHHHHHHHHHH--HHHHHHHHHHHHHTC--------------------------------CCHHH
T ss_pred HHHHhcccccCccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCChhh-HHHHHHhHHHHHhCCCHHHHHHHHHHHh
Confidence 111000 0000000000000 01134678888888888899997 6889999999999999999999999998
Q ss_pred CCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHH
Q psy11738 220 NYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLE 299 (323)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 299 (323)
..+|... ...+ +..... .+++++|+.+|.+|+.++|++ +..++.||.+|...|++.+|+.+|.
T Consensus 148 ~~~~~~~---~~~L----------G~l~~~---~~~~~~A~~~y~~A~~l~P~~-~~~~~~Lg~~~~~~~~~~~A~~~y~ 210 (497)
T d1ya0a1 148 SYICQHC---LVHL----------GDIARY---RNQTSQAESYYRHAAQLVPSN-GQPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHH---HHHH----------HHHHHH---TTCHHHHHHHHHHHHHHCTTB-SHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHH---HHHH----------HHHHHH---cccHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7654311 1111 221111 689999999999999999999 7999999999999999999999999
Q ss_pred HhhCC-CChhHHHHHHHHH
Q psy11738 300 MTKNY-PAVQEATKLLEKA 317 (323)
Q Consensus 300 ~al~~-~~~~~~~~~l~~~ 317 (323)
+|+.+ +|...+..-|..+
T Consensus 211 ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 211 RSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHSSSBCCHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHH
Confidence 99999 6666666655544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=5.1e-15 Score=113.99 Aligned_cols=103 Identities=15% Similarity=0.023 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHH
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYE 174 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
.+...|..+...|++. +|+.+|.++++++|+++.+|..+|.++..+|++ +
T Consensus 12 ~l~~~gn~~~~~~~y~----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~--------------------~ 61 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYE----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY--------------------G 61 (159)
T ss_dssp HHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH--------------------H
T ss_pred HHHHHHHHHHHcCCHH----------HHHHHhhhccccchhhhhhhhhhHHHHHhcccc--------------------c
Confidence 3556788899999999 899999999999999999999999999999766 9
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchh
Q psy11738 175 EALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKD 228 (323)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 228 (323)
+|+..|+++++++|++ ..++..+|.+|..+|++++|+.+|++++.++|++...
T Consensus 62 ~A~~~~~kal~~~p~~-~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~ 114 (159)
T d1a17a_ 62 YALGDATRAIELDKKY-IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 114 (159)
T ss_dssp HHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred hHHHHHHHHHHHcccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 9999999999999998 6999999999999999999999999999999998654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=1.9e-15 Score=120.69 Aligned_cols=126 Identities=13% Similarity=-0.013 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHH
Q psy11738 44 EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIK 123 (323)
Q Consensus 44 ~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 123 (323)
.+++.+...|..|+..|+ |++|+.+|++|++++|.++.++..+|.+|..+|++. +|+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~-------------~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~----------~Ai 58 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRK-------------YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE----------QAL 58 (201)
T ss_dssp CCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH----------HHH
T ss_pred hhHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhh----------hhh
Confidence 356667788999988884 577999999999999999999999999999999999 999
Q ss_pred HHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q psy11738 124 HHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYM 203 (323)
Q Consensus 124 ~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~ 203 (323)
.+|.+|++++|+++.+|+.+|.++..+|++ ++|+..|+++++++|++ ...+...+..+.
T Consensus 59 ~~~~~al~l~p~~~~a~~~lg~~~~~l~~~--------------------~~A~~~~~~al~l~p~~-~~~~~~~~~~~l 117 (201)
T d2c2la1 59 ADCRRALELDGQSVKAHFFLGQCQLEMESY--------------------DEAIANLQRAYSLAKEQ-RLNFGDDIPSAL 117 (201)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHT-TCCCCSHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH--------------------HHHHHHHHHHHHhCccc-HHHHHHHHHHHH
Confidence 999999999999999999999999998765 99999999999998875 344444444444
Q ss_pred HcCCHHHHHH
Q psy11738 204 RLENYEQAAY 213 (323)
Q Consensus 204 ~~g~~~~A~~ 213 (323)
..++...+..
T Consensus 118 ~~~~~~~~~~ 127 (201)
T d2c2la1 118 RIAKKKRWNS 127 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhHHHH
Confidence 4444444333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.57 E-value=7.7e-15 Score=106.01 Aligned_cols=95 Identities=14% Similarity=-0.042 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 94 AIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
..++..|.++...|++. +|+..|+++++++|+++.+|..+|.++...+++
T Consensus 17 ~~~~~~g~~~~~~g~~~----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~-------------------- 66 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLA----------EAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-------------------- 66 (112)
T ss_dssp SCHHHHHHHHHHTTCHH----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH--------------------
T ss_pred HHHHHHHHHHHHHhhhH----------HHHHHHhhhcccccccchhhhhhhhhhhhhhhH--------------------
Confidence 34578999999999999 899999999999999999999999999998766
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTK 219 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 219 (323)
++|+.+|+++++++|++ +.+++.+|.+|..+|++++|++++++.+
T Consensus 67 ~~A~~~~~~al~~~p~~-~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 67 GLAIIALNHARMLDPKD-IAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccccccccccccc-ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999998 7999999999999999999999999875
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=8.2e-13 Score=112.58 Aligned_cols=200 Identities=12% Similarity=-0.014 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhccc----chHHHHHhHHHHHHHHHHHHcc-CCCChhHHHHHhhHH
Q psy11738 73 QLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLE----GTKARIQQLETIKHHMNKAIEL-KPDDSTTLFMLGMWC 147 (323)
Q Consensus 73 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~al~l-~p~~~~~~~~lg~~~ 147 (323)
...+.+...|++|+...|.++..+...+..+...++.. ..........++...|++|+.. .|.+...|..++.+.
T Consensus 30 ~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 30 LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34566788899999999999999888877665544331 1223445566888999999975 788888999999888
Q ss_pred HHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 148 FEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
...|++ +.|...|+++++..|.+...++..++.+..+.|+++.|.+.|++++...|....
T Consensus 110 ~~~~~~--------------------~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~ 169 (308)
T d2onda1 110 ESRMKY--------------------EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp HHTTCH--------------------HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred HhcccH--------------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Confidence 877655 999999999999999874457899999999999999999999999999988764
Q ss_pred hhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCC
Q psy11738 228 DQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPA 306 (323)
Q Consensus 228 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 306 (323)
... .. +... ....++.+.|...|.+++..+|++ +..+...+......|++++|...|++|+...|
T Consensus 170 ~~~-~~----------a~~e--~~~~~~~~~a~~i~e~~l~~~p~~-~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 170 VYV-TA----------ALME--YYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHH-HH----------HHHH--HHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHH-HH----------HHHH--HHhccCHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 322 11 1000 112578899999999999999998 78999999999999999999999999998754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=6.1e-14 Score=118.73 Aligned_cols=210 Identities=10% Similarity=-0.037 Sum_probs=146.7
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC-C----C---CCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhh
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS-E----Y---KEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNA 85 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~-~----~---~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 85 (323)
++.+..-|+.+...|+|++|+..+.++ . . +.-+.++..+|.+|..+|+ +++|+.+++++
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~-------------~~~A~~~~~~a 103 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-------------SVNAVDSLENA 103 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC-------------cHHHHHHHHHh
Confidence 334555666667789999999999876 1 1 2234677888888888774 46688888888
Q ss_pred ccCCCCc------HHHHHHHHHHHHH-hhcccchHHHHHhHHHHHHHHHHHHccCCCC------hhHHHHHhhHHHHhcC
Q psy11738 86 LPQHEDH------YAIHKWLAVILNE-KATLEGTKARIQQLETIKHHMNKAIELKPDD------STTLFMLGMWCFEITD 152 (323)
Q Consensus 86 l~~~p~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~------~~~~~~lg~~~~~~~~ 152 (323)
+++.+.+ ..++..+|.++.. .+++. +|+++|.+++++.+.+ ..++..+|.++...|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~ 173 (290)
T d1qqea_ 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYA----------KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHhhhcccchhHHHHHHHHHHhHhhHHHHHH----------HHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh
Confidence 8887665 4455566666643 46666 8999999999875432 3457778888888765
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh------HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 153 MPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS------QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
+ ++|+..|++++...|.... ..++.+|.++...|+++.|...++++..++|...
T Consensus 174 y--------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~ 233 (290)
T d1qqea_ 174 Y--------------------IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (290)
T ss_dssp H--------------------HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred H--------------------HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc
Confidence 5 9999999999999877521 3467889999999999999999999999998765
Q ss_pred hhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcc
Q psy11738 227 KDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLF 273 (323)
Q Consensus 227 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~ 273 (323)
..+...+ ...+..++ ...+.+.+++|+..|.++..++|..
T Consensus 234 ~sre~~~------l~~l~~a~-~~~d~e~~~eai~~y~~~~~lD~~~ 273 (290)
T d1qqea_ 234 DSRESNF------LKSLIDAV-NEGDSEQLSEHCKEFDNFMRLDKWK 273 (290)
T ss_dssp ----HHH------HHHHHHHH-HTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred chHHHHH------HHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCHHH
Confidence 4322111 11222222 2234678999999999888888743
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=1.3e-12 Score=111.42 Aligned_cols=234 Identities=7% Similarity=-0.076 Sum_probs=179.6
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcccCCC-CcHHHHHHHHHHHHHHHHhhccC-CCCcHHHHHHHHHHHHH
Q psy11738 30 FEEVNKMLESS--EYKEDVEIIWRLVRVKYNLATHSSS-LSDADKKQLILSAYFLVYNALPQ-HEDHYAIHKWLAVILNE 105 (323)
Q Consensus 30 ~~~A~~~~~~~--~~~~~~~~~~~la~~y~~~~~~~~~-~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~ 105 (323)
...+...++++ ..|.++++|+..+......+..... .......+.+++|...++++++. .|.+...+..++.++..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 45566677776 4789999998888766544432110 01234566789999999999975 78888888989999988
Q ss_pred hhcccchHHHHHhHHHHHHHHHHHHccCCCChh-HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q psy11738 106 KATLEGTKARIQQLETIKHHMNKAIELKPDDST-TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAE 184 (323)
Q Consensus 106 ~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~-~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 184 (323)
.|+.+ .++..|+++++..|.+.. +|..++.+....++. +.|...|++++
T Consensus 112 ~~~~~----------~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~--------------------~~ar~i~~~al 161 (308)
T d2onda1 112 RMKYE----------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI--------------------KSGRMIFKKAR 161 (308)
T ss_dssp TTCHH----------HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH--------------------HHHHHHHHHHH
T ss_pred cccHH----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHH
Confidence 88887 888999999999998865 678888888777765 99999999999
Q ss_pred hcCCCchhHHHHHHHHHHH-HcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHH
Q psy11738 185 KQHPLFYSQNVLMLGKTYM-RLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYF 263 (323)
Q Consensus 185 ~~~p~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~ 263 (323)
+..|.. ...+...+.... ..|+.+.|...|++++...|.+..... .+ +.... ..|+++.|...|
T Consensus 162 ~~~~~~-~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~-~y----------~~~~~---~~g~~~~aR~~f 226 (308)
T d2onda1 162 EDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL-AY----------IDYLS---HLNEDNNTRVLF 226 (308)
T ss_dssp TSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHH-HH----------HHHHH---TTCCHHHHHHHH
T ss_pred HhCCCc-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHH-HH----------HHHHH---HcCChHHHHHHH
Confidence 999997 588888887654 468999999999999999888754321 11 11111 268899999999
Q ss_pred HHHHhhCCcc---hhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChh
Q psy11738 264 LEAEKQHPLF---YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQ 308 (323)
Q Consensus 264 ~~a~~~~p~~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 308 (323)
++++...|.. ....|......-...|+.+.+..+++++.++.|..
T Consensus 227 e~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 227 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 9999977643 12456666776678899999999999998876653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.50 E-value=6.9e-14 Score=100.85 Aligned_cols=94 Identities=17% Similarity=0.037 Sum_probs=72.9
Q ss_pred HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 139 TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 139 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
.++.+|..++..|++ ++|+..|+++++++|++ +.++..+|.++.++|++++|+.+|+++
T Consensus 18 ~~~~~g~~~~~~g~~--------------------~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~a 76 (112)
T d1hxia_ 18 NPMEEGLSMLKLANL--------------------AEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHA 76 (112)
T ss_dssp CHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--------------------HHHHHHHhhhccccccc-chhhhhhhhhhhhhhhHHHhhcccccc
Confidence 356677777776654 88888888888888876 577888887777777776666666555
Q ss_pred hCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHH
Q psy11738 219 KNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL 298 (323)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 298 (323)
+.++|++ +.+++.||.+|...|++++|++++
T Consensus 77 ------------------------------------------------l~~~p~~-~~a~~~la~~y~~~g~~~~A~~~l 107 (112)
T d1hxia_ 77 ------------------------------------------------RMLDPKD-IAVHAALAVSHTNEHNANAALASL 107 (112)
T ss_dssp ------------------------------------------------HHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------ccccccc-ccchHHHHHHHHHCCCHHHHHHHH
Confidence 4456776 688999999999999999999999
Q ss_pred HHhh
Q psy11738 299 EMTK 302 (323)
Q Consensus 299 ~~al 302 (323)
++.|
T Consensus 108 ~~~l 111 (112)
T d1hxia_ 108 RAWL 111 (112)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.7e-14 Score=104.45 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCch-hHHHHH
Q psy11738 119 LETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY-SQNVLM 197 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~ 197 (323)
..+|.+.|+++++++|+++.+++++|.++...++. +++++|+..|+++++.+|... ..++++
T Consensus 15 l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~-----------------~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 15 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-----------------DDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH-----------------HHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcch-----------------HHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 33899999999999999999999999998754433 234889999999999988642 358999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhCCCCCCchhh
Q psy11738 198 LGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQ 229 (323)
Q Consensus 198 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 229 (323)
||.+|.++|++++|+.+|+++++++|.+..+.
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~ 109 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 109 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHH
Confidence 99999999999999999999999999987653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=5.9e-14 Score=102.61 Aligned_cols=106 Identities=11% Similarity=0.024 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC--hhHHHHHhhHHHH
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD--STTLFMLGMWCFE 149 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~--~~~~~~lg~~~~~ 149 (323)
.+.+++|...|++++.++|.++++++++|.++...++.. +..+|+..|++++..+|.+ ..+++++|.+|+.
T Consensus 12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~-------d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYND-------DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHH-------HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999997644443 2237999999999999865 4589999999999
Q ss_pred hcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc
Q psy11738 150 ITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 205 (323)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~ 205 (323)
.|++ ++|+++|+++++++|++ ..+...++.+..++
T Consensus 85 ~g~~--------------------~~A~~~~~~aL~~~P~~-~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 85 LKEY--------------------EKALKYVRGLLQTEPQN-NQAKELERLIDKAM 119 (122)
T ss_dssp TTCH--------------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred Hhhh--------------------HHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHH
Confidence 8765 99999999999999998 68888887776544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.47 E-value=2e-11 Score=101.21 Aligned_cols=249 Identities=16% Similarity=0.129 Sum_probs=180.2
Q ss_pred hHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCc
Q psy11738 13 VSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDH 92 (323)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 92 (323)
+++.++..|..++.++++++|+..++++.+.+++++.+.||.+|..-..... .+..|..+++++.... +
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~---------d~~~a~~~~~~a~~~~--~ 69 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEK---------NLKKAASFYAKACDLN--Y 69 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC---------CHHHHHHHHHHHHHTT--C
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcch---------hHHHHHHhhccccccc--c
Confidence 3668899999999999999999999998667899999999999987443333 4677999999988754 7
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
+.+...+|.++........ ....|...+.++.+.. ...+...+|..+..... ....
T Consensus 70 ~~a~~~l~~~~~~~~~~~~------~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~----------------~~~~ 125 (265)
T d1ouva_ 70 SNGCHLLGNLYYSGQGVSQ------NTNKALQYYSKACDLK--YAEGCASLGGIYHDGKV----------------VTRD 125 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCC------CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSS----------------SCCC
T ss_pred cchhhccccccccccccch------hhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCc----------------ccch
Confidence 7888888888765443332 2236778888888764 45666777766554221 1234
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh
Q psy11738 173 YEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF 248 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 248 (323)
...|+..+.+.... .+ ..++..||.+|.. ..+...+..+++.+.... +.... +. ++..++
T Consensus 126 ~~~a~~~~~~~~~~--~~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~A~-~~----------lg~~y~ 189 (265)
T d1ouva_ 126 FKKAVEYFTKACDL--ND-GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGC-FN----------AGNMYH 189 (265)
T ss_dssp HHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH-HH----------HHHHHH
T ss_pred hHHHHHHhhhhhcc--cc-cchhhhhhhhhccCCCcccccccchhhhhcccccc--ccccc-cc----------hhhhcc
Confidence 57888888887664 33 4778999999986 667888999999887642 22221 11 222222
Q ss_pred -ccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy11738 249 -DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYPAVQEATKLLEK 316 (323)
Q Consensus 249 -~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 316 (323)
+.....++++|+.+|.++.+... +.+++.||.+|.. .+++++|+.+|++|.+..+.. +...|.+
T Consensus 190 ~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~-A~~~l~~ 258 (265)
T d1ouva_ 190 HGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG-ACDILKQ 258 (265)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH-HHHHHHT
T ss_pred cCcccccchhhhhhhHhhhhcccC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH-HHHHHHH
Confidence 23345789999999999998853 6789999999986 448999999999998886443 4444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.45 E-value=1.7e-13 Score=106.42 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+..|.++++++|++ +.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 94 ~~Ai~~~~~al~~~p~~-~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~ 145 (169)
T d1ihga1 94 QGAVDSCLEALEIDPSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 145 (169)
T ss_dssp HHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred chhhhhhhhhhhhhhhh-hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 55555555555555554 35555555555555555555555555555555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=5.4e-13 Score=103.58 Aligned_cols=118 Identities=18% Similarity=0.082 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHH---------------HHHHHHHHHHHhhcccch
Q psy11738 48 IIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYA---------------IHKWLAVILNEKATLEGT 112 (323)
Q Consensus 48 ~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------------~~~~~~~~~~~~~~~~~~ 112 (323)
.+...|..++..| ++++|+..|++++...|.... ++.++|.+|..+|++.
T Consensus 15 ~l~~~G~~~~~~~-------------~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~-- 79 (170)
T d1p5qa1 15 IVKERGTVYFKEG-------------KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS-- 79 (170)
T ss_dssp HHHHHHHHHHHHT-------------CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHcC-------------CHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcc--
Confidence 3445566666655 567799999999988776432 3344555555555555
Q ss_pred HHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchh
Q psy11738 113 KARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYS 192 (323)
Q Consensus 113 ~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 192 (323)
+|+.++.++|+++|+++.+++.+|.+++.+|++ ++|+..|+++++++|++ +
T Consensus 80 --------~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~--------------------~~A~~~~~~al~l~P~n-~ 130 (170)
T d1p5qa1 80 --------AAIESCNKALELDSNNEKGLSRRGEAHLAVNDF--------------------ELARADFQKVLQLYPNN-K 130 (170)
T ss_dssp --------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHCSSC-H
T ss_pred --------cccchhhhhhhccccchhhhHHHHHHHHHhhhH--------------------HHHHHHHHHHHHhCCCC-H
Confidence 555556666666666666666666655555433 66666666666666655 4
Q ss_pred HHHHHHHHHHHHcCCHH
Q psy11738 193 QNVLMLGKTYMRLENYE 209 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~ 209 (323)
.+...++.+....++..
T Consensus 131 ~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 131 AAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555554444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.9e-13 Score=100.95 Aligned_cols=102 Identities=20% Similarity=0.173 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCC
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSS 172 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
+..+..+|..+...|++. +|+.+|.++++++|+++.++.++|.+++.+|++
T Consensus 4 a~~~k~~G~~~~~~~~y~----------~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~------------------- 54 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFD----------TALKHYDKAKELDPTNMTYITNQAAVYFEKGDY------------------- 54 (128)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-------------------
T ss_pred HHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhCcccHHHHHhHHHHHHHcCch-------------------
Confidence 345667899999999998 999999999999999999999999999999866
Q ss_pred HHHHHHHHHHHHhcCCCch------hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCC
Q psy11738 173 YEEALKYFLEAEKQHPLFY------SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVK 224 (323)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~------~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 224 (323)
++|+..|+++++++|++. ..++..+|.++..++++++|+.+|++++..+|+
T Consensus 55 -~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 55 -NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp -HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred -HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 999999999999988762 146777888999999999999999999987664
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.2e-12 Score=101.54 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh----hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHh
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF----EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEK 268 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~ 268 (323)
..+...|..++..|++++|+.+|++++...|........ ...........++.+++. .++|++|+.++.+++.
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k---~~~~~~A~~~~~~al~ 90 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK---LQAFSAAIESCNKALE 90 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh---hhhcccccchhhhhhh
Confidence 556778999999999999999999999987766432110 000000111224444443 6899999999999999
Q ss_pred hCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH-HHHHHHHHhh
Q psy11738 269 QHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA-TKLLEKAKSY 320 (323)
Q Consensus 269 ~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~~~~~ 320 (323)
++|++ +.+++.+|.+|..+|++++|+.+|+++++++|++.. ...+..+.+.
T Consensus 91 ~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 91 LDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred ccccc-hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99998 899999999999999999999999999999887544 3555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.41 E-value=2.8e-12 Score=99.20 Aligned_cols=145 Identities=12% Similarity=0.023 Sum_probs=106.7
Q ss_pred hhHHHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCC
Q psy11738 12 KVSEEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHED 91 (323)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 91 (323)
..++.+-+.|..++..|+|.+|+..|.++. .+... ..... .+. ..... +.
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al-------------~~~~~-~~~~~--~~~-----~~~~~---------~~ 62 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIV-------------SWLEM-EYGLS--EKE-----SKASE---------SF 62 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHTT-CCSCC--HHH-----HHHHH---------HH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------HHHHH-hhccc--hhh-----hhhcc---------hh
Confidence 345667789999999999999999887741 00000 00000 000 00111 11
Q ss_pred cHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCC
Q psy11738 92 HYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTS 171 (323)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
...++.++|.||..++++. +|+.+++++++++|++..+++.+|.++..+|++
T Consensus 63 ~~~~~~Nla~~~~~l~~~~----------~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~------------------ 114 (168)
T d1kt1a1 63 LLAAFLNLAMCYLKLREYT----------KAVECCDKALGLDSANEKGLYRRGEAQLLMNEF------------------ 114 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH------------------
T ss_pred HHHHHHhHHHHHHHhhhcc----------cchhhhhhhhhcccchHHHHHHHHHHHHHcCCH------------------
Confidence 2446778999999999999 899999999999999999999999999998765
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHH-HHHHHHH
Q psy11738 172 SYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQ-AAYYLEM 217 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~-A~~~~~~ 217 (323)
++|+.+|.++++++|++ +.+...++.+....++..+ ..+.|.+
T Consensus 115 --~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~~~~~~e~~kk~~~~ 158 (168)
T d1kt1a1 115 --ESAKGDFEKVLEVNPQN-KAARLQIFMCQKKAKEHNERDRRTYAN 158 (168)
T ss_dssp --HHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999998 6899999999877776653 3333333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.1e-13 Score=124.04 Aligned_cols=122 Identities=11% Similarity=0.011 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.++|+.|+..+.+++.++|.+..++..+|..+...++.. +|...+.+++.++|. .++..+|.++...+
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~----------~A~~~~~~al~~~~~--~~~~~LG~l~~~~~ 166 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS----------AIVKPQSSSCSYICQ--HCLVHLGDIARYRN 166 (497)
T ss_dssp HHHHHHHHHHHTC-----------------------------------------CCHHHHHHHH--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHH----------HHHHHHHHHhCCCHH--HHHHHHHHHHHHcc
Confidence 455566666666666666666666666666666666665 555566666655543 45556666665554
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++ ++|+.+|++|++++|++ ..++.+||.+|...|++.+|+.+|.+|+.++|...
T Consensus 167 ~~--------------------~~A~~~y~~A~~l~P~~-~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~ 220 (497)
T d1ya0a1 167 QT--------------------SQAESYYRHAAQLVPSN-GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp CH--------------------HHHHHHHHHHHHHCTTB-SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred cH--------------------HHHHHHHHHHHHHCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Confidence 33 66666666666666665 56666666666666666666666666666665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.38 E-value=2.3e-12 Score=98.13 Aligned_cols=69 Identities=14% Similarity=-0.012 Sum_probs=50.0
Q ss_pred HHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 139 TLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 139 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
++.++|.+|+.++++ ++|+.+++++++++|++ ..+++.+|.+|..+|++++|+.+|+++
T Consensus 69 ~~~Nla~~~~~l~~~--------------------~~Al~~~~~al~~~p~~-~ka~~~~g~~~~~lg~~~~A~~~~~~a 127 (153)
T d2fbna1 69 CNLNLATCYNKNKDY--------------------PKAIDHASKVLKIDKNN-VKALYKLGVANMYFGFLEEAKENLYKA 127 (153)
T ss_dssp HHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhccc--------------------chhhhhhhccccccchh-hhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence 456677777776544 77777777777777776 577777777777777777777777777
Q ss_pred hCCCCCCchh
Q psy11738 219 KNYPVKQDKD 228 (323)
Q Consensus 219 l~~~~~~~~~ 228 (323)
++++|.+...
T Consensus 128 l~l~P~n~~~ 137 (153)
T d2fbna1 128 ASLNPNNLDI 137 (153)
T ss_dssp HHHSTTCHHH
T ss_pred HHhCCCCHHH
Confidence 7777776544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.37 E-value=4.3e-12 Score=96.55 Aligned_cols=124 Identities=11% Similarity=0.069 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh------hhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHH
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF------EITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEA 266 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a 266 (323)
..+...|..+.+.|+|.+|+..|++++...|........ ..... .....++.+++. .+++++|+.+|.++
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~Nla~~~~~---l~~~~~Al~~~~~a 93 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI-SCNLNLATCYNK---NKDYPKAIDHASKV 93 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH-HHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHH-HHHhhHHHHHHH---hcccchhhhhhhcc
Confidence 446668899999999999999999999876655422110 00000 011123334443 68999999999999
Q ss_pred HhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHH-HHHHHHHHhhh
Q psy11738 267 EKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEA-TKLLEKAKSYL 321 (323)
Q Consensus 267 ~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~~~~~~ 321 (323)
+.++|++ ..+++.+|.+|..+|++++|+.+|+++++++|++.. ...+..+.+.|
T Consensus 94 l~~~p~~-~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 94 LKIDKNN-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred ccccchh-hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999998 799999999999999999999999999999887544 45566655544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=3.9e-11 Score=102.37 Aligned_cols=220 Identities=12% Similarity=-0.019 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHh
Q psy11738 44 EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY-----AIHKWLAVILNEKATLEGTKARIQQ 118 (323)
Q Consensus 44 ~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (323)
.++++....|.++...|+ +++|+.+++++++..|.+. .++..+|.++...|++.
T Consensus 10 ~~ae~~~lrA~~~~~~g~-------------~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~-------- 68 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGN-------------PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT-------- 68 (366)
T ss_dssp HHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHH--------
T ss_pred hhHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHH--------
Confidence 456777778888888775 5779999999999999874 46778899999999998
Q ss_pred HHHHHHHHHHHHccCCCCh------hHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC---
Q psy11738 119 LETIKHHMNKAIELKPDDS------TTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL--- 189 (323)
Q Consensus 119 ~~~a~~~~~~al~l~p~~~------~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 189 (323)
+|...|.+++++.|... .++..+|.++...+++ ..|+..+.+++.+.+.
T Consensus 69 --~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~a~~~~~~al~~~~~~~~ 126 (366)
T d1hz4a_ 69 --RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL--------------------QTAWETQEKAFQLINEQHL 126 (366)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhHhccc
Confidence 88999999998876543 3456667777776654 7888888887765221
Q ss_pred --c--hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh-hhcch----------------------------
Q psy11738 190 --F--YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF-EITDM---------------------------- 236 (323)
Q Consensus 190 --~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~---------------------------- 236 (323)
. ....+..+|.++...|+++.+..++++++...+........ .....
T Consensus 127 ~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 206 (366)
T d1hz4a_ 127 EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 206 (366)
T ss_dssp TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC
T ss_pred chhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence 1 12456678888888888888888888888776654322110 00000
Q ss_pred ------hHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcch---hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 237 ------PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFY---SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 237 ------~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~---~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
.......+... ...+++++|...+.+++...|... ...+..+|.+|...|++++|..++++++.....
T Consensus 207 ~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 283 (366)
T d1hz4a_ 207 YHSDWISNANKVRVIYW---QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 283 (366)
T ss_dssp CCHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 00000011111 114677788888887777765431 234566788888888888888888888766544
Q ss_pred hH
Q psy11738 308 QE 309 (323)
Q Consensus 308 ~~ 309 (323)
..
T Consensus 284 ~~ 285 (366)
T d1hz4a_ 284 LR 285 (366)
T ss_dssp TT
T ss_pred cc
Confidence 33
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.34 E-value=2.2e-12 Score=99.93 Aligned_cols=114 Identities=16% Similarity=0.092 Sum_probs=97.1
Q ss_pred HHHHHHhhhHHHhhccHHHHHHHHHhC-C-----------------CCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHH
Q psy11738 14 SEEFLKKSDDLFEEQQFEEVNKMLESS-E-----------------YKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLI 75 (323)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~A~~~~~~~-~-----------------~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~ 75 (323)
++.+...|..++..|+|++|+..+.++ . .|.++.++..+|.+|..+|+ +
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-------------~ 93 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD-------------W 93 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC-------------H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcc-------------c
Confidence 344567788999999999998888654 1 34566677778888888774 5
Q ss_pred HHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHh
Q psy11738 76 LSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEI 150 (323)
Q Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~ 150 (323)
++|+.++.++++++|+++.+++++|.++..+|++. +|+..|.++++++|+++.+...++.+....
T Consensus 94 ~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~----------~A~~~~~~al~l~p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 94 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD----------QALADLKKAQEIAPEDKAIQAELLKVKQKI 158 (169)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999 899999999999999999999998876544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.33 E-value=2.2e-11 Score=94.07 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh---------------hHHHHHhhHHHHhcCCcHHH
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS---------------TTLFMLGMWCFEITDMPWYQ 157 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~---------------~~~~~lg~~~~~~~~~~~~~ 157 (323)
+..+...|..+...|++. +|+.+|.+|+.+.|... .++.++|.+++.++++
T Consensus 15 a~~~~e~G~~~~~~~~~~----------~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~---- 80 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYV----------QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY---- 80 (168)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH----
T ss_pred HHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc----
Confidence 455677899999999998 88889999998765432 2344566666666544
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 158 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
++|+.++.++++++|++ ..+++.+|.+|..+|++++|+..|++++.++|++..
T Consensus 81 ----------------~~Ai~~~~~al~l~p~~-~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~ 133 (168)
T d1kt1a1 81 ----------------TKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133 (168)
T ss_dssp ----------------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred ----------------ccchhhhhhhhhcccch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 77777777777777776 577777777777777777777777777777776643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.21 E-value=7.5e-11 Score=89.81 Aligned_cols=98 Identities=12% Similarity=0.026 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhcCCCch-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHH
Q psy11738 172 SYEEALKYFLEAEKQHPLFY-----------SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQ 240 (323)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~-----------~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 240 (323)
+|++|+..|++++++.|+.+ +.+|.++|.+|..+|++++|+..+++++++.|......
T Consensus 24 ~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~----------- 92 (156)
T d2hr2a1 24 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN----------- 92 (156)
T ss_dssp CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-----------
T ss_pred CHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc-----------
Confidence 45999999999999987642 25788999999999999999999998887643321100
Q ss_pred HHHHHHhhccCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 241 RKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
... .|.. ..+++++|.+|..+|++++|+.+|++|+++.|.
T Consensus 93 -------------~~~-------------~~~~-~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 93 -------------QDE-------------GKLW-ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp -------------STH-------------HHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------ccc-------------cchh-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 000 1112 356889999999999999999999999998665
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=6e-11 Score=82.30 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhhCCc
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPL 272 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~Al~~~~~a~~~~p~ 272 (323)
...+.+|.++.+.|+|++|+.+|++|+++.|.+... .++
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~-----------------------------------------~~~ 44 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-----------------------------------------TID 44 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-----------------------------------------SSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc-----------------------------------------Ccc
Confidence 557899999999999999999999998876554321 222
Q ss_pred chhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhH-HHHHHHHHHhhhcC
Q psy11738 273 FYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQE-ATKLLEKAKSYLKK 323 (323)
Q Consensus 273 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~l~~~~~~~~~ 323 (323)
. +.++.+||.+|..+|++++|+.+|+++++++|++. +..-+...++.|+|
T Consensus 45 ~-~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l~k 95 (95)
T d1tjca_ 45 K-VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95 (95)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC
T ss_pred H-HHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 2 56678888888888888888888888888877744 34566666666654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.08 E-value=5.8e-11 Score=90.43 Aligned_cols=104 Identities=12% Similarity=-0.067 Sum_probs=82.4
Q ss_pred HHHHHHH--HHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCCh------------hHHHHHhhHHHHhcCCcHHHH
Q psy11738 93 YAIHKWL--AVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDS------------TTLFMLGMWCFEITDMPWYQR 158 (323)
Q Consensus 93 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~------------~~~~~lg~~~~~~~~~~~~~~ 158 (323)
+.++..+ |..+...|+++ +|+..|.+++++.|+.+ .++.++|.++..+|++
T Consensus 7 a~a~~~l~~g~~~~~~g~y~----------~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~----- 71 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYD----------EAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF----- 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCcc-----
Confidence 3444444 56666777787 89999999999998764 4688899998888765
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCC-------c---hhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCc
Q psy11738 159 KIANAIFDTLPTSSYEEALKYFLEAEKQHPL-------F---YSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQD 226 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 226 (323)
++|+..+++++++.|. . ...+++++|.+|..+|++++|+.+|++++++.|...
T Consensus 72 ---------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 72 ---------------DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ---------------chhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 8888888888876432 1 124689999999999999999999999999876554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.5e-10 Score=79.02 Aligned_cols=82 Identities=13% Similarity=0.022 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC-------hhHHHHHhhHHHHhcCCcHHHHHHHHHhh
Q psy11738 93 YAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD-------STTLFMLGMWCFEITDMPWYQRKIANAIF 165 (323)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~-------~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 165 (323)
++-.+.+|.++...|++. +|+..|++|+++.|.+ ..++.+||.+++..|++
T Consensus 5 addc~~lG~~~~~~g~y~----------~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~------------ 62 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYY----------HTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL------------ 62 (95)
T ss_dssp HHHHHHHHHHHHHTTCHH----------HHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH------------
T ss_pred HHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCCh------------
Confidence 455689999999999999 8999999999987654 46789999999998766
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc
Q psy11738 166 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRL 205 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~ 205 (323)
++|+.+|+++++++|++ +.++.+++.+...+
T Consensus 63 --------~~A~~~y~~aL~l~P~~-~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 63 --------DKALLLTKKLLELDPEH-QRANGNLKYFEYIM 93 (95)
T ss_dssp --------HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 99999999999999998 69999998766544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.99 E-value=1.4e-07 Score=77.34 Aligned_cols=203 Identities=16% Similarity=0.148 Sum_probs=146.7
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHH
Q psy11738 45 DVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKH 124 (323)
Q Consensus 45 ~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (323)
||++++.+|..+...++ +++|+.+|++|.+. .++.+++.+|.+|....... .+...+..
T Consensus 1 ~p~~~~~lG~~~~~~~d-------------~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~------~d~~~a~~ 59 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKD-------------FTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVE------KNLKKAAS 59 (265)
T ss_dssp CHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC------CCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcc------hhHHHHHH
Confidence 67889999999988774 46799999999875 58899999999987633222 22337778
Q ss_pred HHHHHHccCCCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q psy11738 125 HMNKAIELKPDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR 204 (323)
Q Consensus 125 ~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~ 204 (323)
++.++.. +.++.+...+|.++...... ......|+..|+.+.+..+. .+...+|..+..
T Consensus 60 ~~~~a~~--~~~~~a~~~l~~~~~~~~~~----------------~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~ 118 (265)
T d1ouva_ 60 FYAKACD--LNYSNGCHLLGNLYYSGQGV----------------SQNTNKALQYYSKACDLKYA---EGCASLGGIYHD 118 (265)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHHTSSS----------------CCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHH
T ss_pred hhccccc--ccccchhhcccccccccccc----------------chhhHHHHHHHhhhhhhhhh---hHHHhhcccccC
Confidence 8888774 45888899999876543221 24568999999999987553 556777777765
Q ss_pred ----cCCHHHHHHHHHHHhCCCCCCchhhhhhhcchhHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHHhhCCcchhhhhH
Q psy11738 205 ----LENYEQAAYYLEMTKNYPVKQDKDQCFEITDMPWYQRKIANAIF-DTLPTSSYEEALKYFLEAEKQHPLFYSQNVL 279 (323)
Q Consensus 205 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~ 279 (323)
......|+..+.+....... .. ... ++..+. +.....+...+..++..+.+. .+ +.+++
T Consensus 119 ~~~~~~~~~~a~~~~~~~~~~~~~--~~-~~~----------L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~-~~A~~ 182 (265)
T d1ouva_ 119 GKVVTRDFKKAVEYFTKACDLNDG--DG-CTI----------LGSLYDAGRGTPKDLKKALASYDKACDL--KD-SPGCF 182 (265)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTTCH--HH-HHH----------HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC-HHHHH
T ss_pred CCcccchhHHHHHHhhhhhccccc--ch-hhh----------hhhhhccCCCcccccccchhhhhccccc--cc-ccccc
Confidence 55577888888887664221 11 111 111111 233456788999999998864 34 68899
Q ss_pred HHHHHHHH----hcCHHHHHHHHHHhhCCC
Q psy11738 280 MLGKTYMR----LENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 280 ~lg~~y~~----~g~~~~A~~~~~~al~~~ 305 (323)
.||.+|.. ..++++|+.+|+++.+..
T Consensus 183 ~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 183 NAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp HHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred chhhhcccCcccccchhhhhhhHhhhhccc
Confidence 99999997 779999999999998884
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.93 E-value=3.3e-10 Score=93.60 Aligned_cols=125 Identities=12% Similarity=0.035 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
.|++++|+..++++++.+|+++.++..+|.+|...|+++ +|...|+++++++|++..++..++.++...+
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e----------~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~ 78 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFE----------RADEQLMQSIKLFPEYLPGASQLRHLVKAAQ 78 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999999999999999 8999999999999999999999998765543
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCch
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQ-HPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDK 227 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 227 (323)
.. .++...+.+.... +|.. ...+...+.++...|++++|+..++++....|....
T Consensus 79 ~~--------------------~~a~~~~~~~~~~~~p~~-~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 79 AR--------------------KDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp HH--------------------HHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred cc--------------------HHHHHHhhhhhcccCchH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 22 3333333332222 4543 466788899999999999999999999999998753
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.84 E-value=2.9e-09 Score=87.86 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCCh
Q psy11738 275 SQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAV 307 (323)
Q Consensus 275 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 307 (323)
...+...+.++...|++++|...+.++.++.|.
T Consensus 99 ~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 99 LTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 355566677777777777777777777777655
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.83 E-value=9.5e-08 Score=73.78 Aligned_cols=120 Identities=13% Similarity=-0.035 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCchhhhh----------hhcc-hhHHHHHHHHHhhccCCCCcHHHHHH
Q psy11738 193 QNVLMLGKTYMRLENYEQAAYYLEMTKNYPVKQDKDQCF----------EITD-MPWYQRKIANAIFDTLPTSSYEEALK 261 (323)
Q Consensus 193 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~-~~~~~~~~a~~~~~~~~~~~~~~Al~ 261 (323)
..+...|......|++++|+..|.+|+.+.+........ .+.. ..-....++..++. .|++++|+.
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~---~g~~~~Al~ 88 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA---CGRASAVIA 88 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCchHHHH
Confidence 568888999999999999999999999997766422110 0000 00011123333333 689999999
Q ss_pred HHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHh-------hCCCChhHHHHHHHH
Q psy11738 262 YFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT-------KNYPAVQEATKLLEK 316 (323)
Q Consensus 262 ~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-------l~~~~~~~~~~~l~~ 316 (323)
.+++++.++|.+ ...|..++.+|...|++.+|+..|+++ +-+.|..+...+...
T Consensus 89 ~~~~al~~~P~~-e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~ 149 (179)
T d2ff4a2 89 ELEALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 149 (179)
T ss_dssp HHHHHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHhCCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 999999999998 899999999999999999999999998 778888776555444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.72 E-value=1e-07 Score=73.67 Aligned_cols=116 Identities=11% Similarity=0.013 Sum_probs=81.6
Q ss_pred CcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcC-C----cHHHHHHHHHhh
Q psy11738 91 DHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITD-M----PWYQRKIANAIF 165 (323)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~-~----~~~~~~~~~~~~ 165 (323)
...+.+...|......|+++ +|.++|.+|+.+.|.+.......+.+...... + -......+...
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e----------~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~- 77 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFE----------QASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAE- 77 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34556778888888899998 89999999999988765433222211111100 0 00000011111
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Q psy11738 166 DTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKN 220 (323)
Q Consensus 166 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 220 (323)
...|++++|+.+++++++++|.+ ..+|..++.+|...|++.+|+..|+++..
T Consensus 78 --~~~g~~~~Al~~~~~al~~~P~~-e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 78 --IACGRASAVIAELEALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp --HHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred --HHCCCchHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 12367799999999999999998 79999999999999999999999999833
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.43 E-value=2.3e-06 Score=62.30 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhc
Q psy11738 72 KQLILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEIT 151 (323)
Q Consensus 72 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 151 (323)
+.++++|+.+|+++.+.. ++.+.+.++.. ... +..+|.++++++.+. +++.+.+.||.+|..-.
T Consensus 6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~~--~~~----------~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~ 69 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELN--EMFGCLSLVSN--SQI----------NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGK 69 (133)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHHHHHHTC--TTS----------CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHHCC--Chhhhhhhccc--ccc----------CHHHHHHHHhhhhcc--cchhhhhhHHHhhhhcc
Confidence 357889999999999875 55666665531 112 223788899999864 68999999998876421
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----cCCHHHHHHHHHHHhCC
Q psy11738 152 DMPWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNY 221 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 221 (323)
. ...++++|+++|+++.+.. + +.+.+.||.+|.. ..++++|+.+|++|.+.
T Consensus 70 ~----------------~~~d~~~A~~~~~~aa~~g--~-~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 70 Y----------------VKKDLRKAAQYYSKACGLN--D-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp S----------------SCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred c----------------cchhhHHHHHHHhhhhccC--c-chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 1 1246799999999998863 3 5889999999987 57899999999999876
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.33 E-value=3.7e-06 Score=61.12 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHH----hcCHHHHHHHHHHhhCCC
Q psy11738 254 SSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMR----LENYEQAAYYLEMTKNYP 305 (323)
Q Consensus 254 ~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~ 305 (323)
.++++|+.+|+++.+... +.+.+.||.+|.. ..+..+|+.+|++|.++.
T Consensus 73 ~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 456777788887776543 5677888888876 567888888888887763
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=2.9e-06 Score=59.96 Aligned_cols=83 Identities=6% Similarity=-0.025 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcH-HHHHHHHHHHHHhhcccchHHHHHhHHHH
Q psy11738 44 EDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHY-AIHKWLAVILNEKATLEGTKARIQQLETI 122 (323)
Q Consensus 44 ~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (323)
-.+++.|.+|.++....+ ....++|+..++.+++.+|.+. ++++.+|..|..+|+++ +|
T Consensus 33 ~s~qt~F~YAw~Lv~S~~----------~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~----------~A 92 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTD----------VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS----------MA 92 (124)
T ss_dssp SCHHHHHHHHHHHHHSSC----------HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHH----------HH
T ss_pred CCcchHHHHHHHHHcCCc----------HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHH----------HH
Confidence 347888888988876653 3467899999999999999775 89999999999999999 99
Q ss_pred HHHHHHHHccCCCChhHHHHHhhH
Q psy11738 123 KHHMNKAIELKPDDSTTLFMLGMW 146 (323)
Q Consensus 123 ~~~~~~al~l~p~~~~~~~~lg~~ 146 (323)
+++++++++++|+|..+....-.+
T Consensus 93 ~~~~~~~L~ieP~n~qA~~L~~~I 116 (124)
T d2pqrb1 93 KRYVDTLFEHERNNKQVGALKSMV 116 (124)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHH
Confidence 999999999999998887665554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.26 E-value=1.2e-06 Score=61.96 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=56.8
Q ss_pred cCCCCcHHHHHHHHHHHHhhCCcchhhhhHHHHHHHHHhcCHHHHHHHHHHhhCCCChhHHH-HHHHHHHh
Q psy11738 250 TLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMTKNYPAVQEAT-KLLEKAKS 319 (323)
Q Consensus 250 ~~~~~~~~~Al~~~~~a~~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~ 319 (323)
.....+.++++..+..++..+|....+.++.||.+|.++|++++|..+++++|+++|.+.-. .+.+-+++
T Consensus 48 S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~ 118 (124)
T d2pqrb1 48 STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED 118 (124)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence 33456788999999999999997634788999999999999999999999999998885544 44444433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.53 E-value=2.2 Score=34.65 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=76.9
Q ss_pred HHHHHhhhHHHhhccHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHhhccCCCCcHH
Q psy11738 15 EEFLKKSDDLFEEQQFEEVNKMLESSEYKEDVEIIWRLVRVKYNLATHSSSLSDADKKQLILSAYFLVYNALPQHEDHYA 94 (323)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~la~~y~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 94 (323)
-+.-..|+.+++.|.|+.|..+|....+ +-++..+|..+++ +..|..++.++ +++.
T Consensus 15 ~d~~~i~~~c~~~~lye~A~~lY~~~~d------~~rl~~~~v~l~~-------------~~~avd~~~k~-----~~~~ 70 (336)
T d1b89a_ 15 AHIQQVGDRCYDEKMYDAAKLLYNNVSN------FGRLASTLVHLGE-------------YQAAVDGARKA-----NSTR 70 (336)
T ss_dssp --------------CTTTHHHHHHHTTC------HHHHHHHHHTTTC-------------HHHHHHHHHHH-----TCHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHhCCC------HHHHHHHHHhhcc-------------HHHHHHHHHHc-----CCHH
Confidence 3455678888889999999999887533 2345566666664 34577777665 3566
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccC-CCChhHHHHHhhHHHHhcCCcHHHHHHHHHhhcCCCCCCH
Q psy11738 95 IHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELK-PDDSTTLFMLGMWCFEITDMPWYQRKIANAIFDTLPTSSY 173 (323)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~-p~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
.+......+....+.. ...+..+. ..+++-...+-..|...| .+
T Consensus 71 ~~k~~~~~l~~~~e~~---------------la~i~~~~~~~~~d~l~~~v~~ye~~~--------------------~~ 115 (336)
T d1b89a_ 71 TWKEVCFACVDGKEFR---------------LAQMCGLHIVVHADELEELINYYQDRG--------------------YF 115 (336)
T ss_dssp HHHHHHHHHHHTTCHH---------------HHHHTTTTTTTCHHHHHHHHHHHHHTT--------------------CH
T ss_pred HHHHHHHHHHhCcHHH---------------HHHHHHHHhhcCHHHHHHHHHHHHHcC--------------------Ch
Confidence 6666666665443332 11111111 123332233333333333 45
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy11738 174 EEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYLEMT 218 (323)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 218 (323)
++.+.+++.++..++.+ ...+..++.+|.+.+ .++-.++++..
T Consensus 116 e~Li~~Le~~~~~~~~~-~~~~~~L~~lyak~~-~~kl~e~l~~~ 158 (336)
T d1b89a_ 116 EELITMLEAALGLERAH-MGMFTELAILYSKFK-PQKMREHLELF 158 (336)
T ss_dssp HHHHHHHHHHTTSTTCC-HHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccc-hHHHHHHHHHHHHhC-hHHHHHHHHhc
Confidence 88999999998887776 577888888887754 56666666653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.54 E-value=6 Score=33.08 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCChhHHHHHhhHHHHhcCC-
Q psy11738 75 ILSAYFLVYNALPQHEDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDDSTTLFMLGMWCFEITDM- 153 (323)
Q Consensus 75 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~- 153 (323)
+..+...+.....-....+...||+|..+..+|+.. +|...|..+.. .++ .|-.|+.- ..|.-
T Consensus 301 ~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~----------~A~~~~~~~a~-~~~---fYG~LAa~--~Lg~~~ 364 (450)
T d1qsaa1 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA----------EAKEILHQLMQ-QRG---FYPMVAAQ--RIGEEY 364 (450)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH----------HHHHHHHHHHT-SCS---HHHHHHHH--HTTCCC
T ss_pred hHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChh----------hHHHHHHHHhc-CCC---hHHHHHHH--HcCCCC
Confidence 455777777655544456778899999999999888 77777887764 332 33333322 22211
Q ss_pred ------------------cHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCHHHHHHHH
Q psy11738 154 ------------------PWYQRKIANAIFDTLPTSSYEEALKYFLEAEKQHPLFYSQNVLMLGKTYMRLENYEQAAYYL 215 (323)
Q Consensus 154 ------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~y~~~g~~~~A~~~~ 215 (323)
..+.+.. .+ ...|....|...|..++..-+ ..-...++....+.|.++.||...
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~ra~--~L---~~~g~~~~A~~e~~~l~~~~~---~~~~~~la~lA~~~g~~~~aI~a~ 436 (450)
T d1qsaa1 365 ELKIDKAPQNVDSALTQGPEMARVR--EL---MYWNLDNTARSEWANLVKSKS---KTEQAQLARYAFNNQWWDLSVQAT 436 (450)
T ss_dssp CCCCCCCCSCCCCHHHHSHHHHHHH--HH---HHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCCCCccHHHhhhcChHHHHHH--HH---HHcCCchHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCChhHHHHHH
Confidence 0111110 11 123667888888887765322 245667888899999999999888
Q ss_pred HHHhC
Q psy11738 216 EMTKN 220 (323)
Q Consensus 216 ~~al~ 220 (323)
.++-.
T Consensus 437 ~~~~~ 441 (450)
T d1qsaa1 437 IAGKL 441 (450)
T ss_dssp HHTTC
T ss_pred HHHHc
Confidence 77743
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| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.30 E-value=1.3 Score=27.35 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=18.7
Q ss_pred HHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 16 EFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 16 ~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
-.-.+|+.+...|+|++||.+.++
T Consensus 10 ~~~RrAer~l~~~rydeAIech~k 33 (83)
T d2crba1 10 QQSRRADRLLAAGKYEEAISCHRK 33 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345588888999999999876665
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| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.55 E-value=3.1 Score=26.59 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=21.6
Q ss_pred hhhHHHHHHhhhHHHhhccHHHHHHHHHh
Q psy11738 11 SKVSEEFLKKSDDLFEEQQFEEVNKMLES 39 (323)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 39 (323)
...+..++.+|-.+-..|+|++|+.+|..
T Consensus 12 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~ 40 (93)
T d1wfda_ 12 STAAVAVLKRAVELDAESRYQQALVCYQE 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556677888888888888888876665
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=85.53 E-value=6.1 Score=30.02 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=32.7
Q ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHcc--CCC-ChhHHHHHhhHH
Q psy11738 90 EDHYAIHKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIEL--KPD-DSTTLFMLGMWC 147 (323)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l--~p~-~~~~~~~lg~~~ 147 (323)
|..-+-+..++.+....++++ +...+.+++++. +|. +.+-...+..+|
T Consensus 1 ~~~Re~lv~~AklaeqaeRy~----------dm~~~mk~v~~~~~~~~Ls~eERnLlsvay 51 (236)
T d1o9da_ 1 PTAREENVYMAKLAEQAERYE----------EMVEFMEKVSNSLGSEELTVEERNLLSVAY 51 (236)
T ss_dssp CCHHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 334445667788887788887 777888889887 554 555555666554
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| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.93 E-value=9.4 Score=28.78 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcccchHHHHHhHHHHHHHHHHHHccCCCC-hhHHHHHhhHH
Q psy11738 96 HKWLAVILNEKATLEGTKARIQQLETIKHHMNKAIELKPDD-STTLFMLGMWC 147 (323)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~l~p~~-~~~~~~lg~~~ 147 (323)
+..++.+....++++ +..++.+++++.+|.- .+-...+..+|
T Consensus 6 ~v~~Aklaeq~eRy~----------dm~~~mk~~~~~~~eLt~eERnLlsvay 48 (230)
T d2o02a1 6 LVQKAKLAEQAERYD----------DMAACMKSVTEQGAELSNEERNLLSVAY 48 (230)
T ss_dssp HHHHHHHHHHTTCHH----------HHHHHHHHHHHTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHH----------HHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 466777777778887 7888899999998873 33444444443
|