Psyllid ID: psy11793

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRyrtkslktpsnlFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR
Flexible Loop (DISEMBL)
MMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR
Low Complexity Region (SEG)
MMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR
Disordered region (IsUnstruct)
*****PMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYD***
Disordered Region (DISOPRED)
***NMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR
Disordered Region (DISEMBL)
MMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR
Disordered Region (DISPRO)
*MVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
Q26495	380	Opsin-2 OS=Schistocerca g	N/A	N/A	0.699	0.226	0.574	4e-24
P90680	377	Opsin, blue-sensitive OS=	yes	N/A	0.699	0.228	0.546	3e-23
P91657	382	Opsin Rh5 OS=Drosophila m	yes	N/A	0.715	0.230	0.443	2e-15
O96107	384	Opsin-3 OS=Manduca sexta	N/A	N/A	0.699	0.223	0.488	3e-15
P29404	380	Opsin Rh4 OS=Drosophila p	no	N/A	0.731	0.236	0.4	1e-13
O61303	371	Opsin, ultraviolet-sensit	no	N/A	0.707	0.234	0.402	4e-13
P08255	378	Opsin Rh4 OS=Drosophila m	no	N/A	0.658	0.214	0.406	1e-12
P28680	382	Opsin Rh3 OS=Drosophila p	no	N/A	0.756	0.243	0.391	1e-12
Q17053	377	Rhodopsin, long-wavelengt	no	N/A	0.788	0.257	0.418	1e-12
P04950	383	Opsin Rh3 OS=Drosophila m	no	N/A	0.691	0.221	0.4	2e-12

>sp|Q26495|OPS2_SCHGR Opsin-2 OS=Schistocerca gregaria GN=Lo2 PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query: 38  SAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNS-FYQRVIGWETGC 96
           S++ N ++ +    TKS++TPSN+FI N AL D+ M++ MPMLVV+S FYQR +GWE GC
Sbjct: 66  SSLGNGIVLWIYATTKSIRTPSNMFIVNLALFDVLMLLEMPMLVVSSLFYQRPVGWELGC 125

Query: 97  DIYGLFGSISGFGSAMNNAVIAYDRYR 123
           DIY   GS++G GSA+NNA IA+DRYR
Sbjct: 126 DIYAALGSVAGIGSAINNAAIAFDRYR 152

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.
Schistocerca gregaria (taxid: 7010)

>sp|P90680|OPSB_APIME Opsin, blue-sensitive OS=Apis mellifera GN=BLOP PE=1 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/86 (54%), Positives = 63/86 (73%)

Query: 38  SAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCD 97
           S + N  + +    +KSL+TPSN+FI + A+ D+ M   MPMLV++SF +R+IGWE GCD
Sbjct: 71  SLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEMPMLVISSFMERMIGWEIGCD 130

Query: 98  IYGLFGSISGFGSAMNNAVIAYDRYR 123
           +Y +FGSISG G AM NA IA+DRYR
Sbjct: 131 VYSVFGSISGMGQAMTNAAIAFDRYR 156

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to 11-cis-retinal.

Apis mellifera (taxid: 7460)

>sp|P91657|OPS5_DROME Opsin Rh5 OS=Drosophila melanogaster GN=Rh5 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 56/88 (63%)

Query: 36  FGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETG 95
             S   N ++ +    +KSL+TPSNL I N A+ DL M  NMP  ++N+    ++G + G
Sbjct: 64  LSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLFMCTNMPHYLINATVGYIVGGDLG 123

Query: 96  CDIYGLFGSISGFGSAMNNAVIAYDRYR 123
           CDIY L G ISG G+++ NA IA+DRY+
Sbjct: 124 CDIYALNGGISGMGASITNAFIAFDRYK 151

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila melanogaster (taxid: 7227)

>sp|O96107|OPS3_MANSE Opsin-3 OS=Manduca sexta GN=OP3 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 65/86 (75%)

Query: 38  SAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCD 97
           S   N ++ +    +KSL++ SN+F+ N A+ DL MM+ MP+L++NSFYQR++G++ GCD
Sbjct: 72  SLTGNGIVIWIFSTSKSLRSASNMFVINLAVFDLMMMLEMPLLIMNSFYQRLVGYQLGCD 131

Query: 98  IYGLFGSISGFGSAMNNAVIAYDRYR 123
           +Y + GS+SG G A+ NAVIA+DRY+
Sbjct: 132 VYAVLGSLSGIGGAITNAVIAFDRYK 157

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. May play a role in photoperiodic photoreception.

Manduca sexta (taxid: 7130)

>sp|P29404|OPS4_DROPS Opsin Rh4 OS=Drosophila pseudoobscura pseudoobscura GN=Rh4 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 55/95 (57%)

Query: 28  GLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQ 87
           G+F     F S + N ++ +    +KSL+TPSN+F+ N A+ DL M +  P+ + NSF++
Sbjct: 59  GVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLKAPIFIYNSFHR 118

Query: 88  RVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
                 T C I+   GS SG G+ M NA I YDRY
Sbjct: 119 GFALGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY 153

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|O61303|OPSUV_APIME Opsin, ultraviolet-sensitive OS=Apis mellifera GN=UVOP PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 53/87 (60%)

Query: 36  FGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETG 95
           F + + N ++ +     KSL+TPSN+F+ N A+ D  MM+  P+ + NSF         G
Sbjct: 60  FLALLGNGLVIWIFCAAKSLRTPSNMFVVNLAICDFFMMIKTPIFIYNSFNTGFALGNLG 119

Query: 96  CDIYGLFGSISGFGSAMNNAVIAYDRY 122
           C I+ + GS++G G+A+ NA IAYDRY
Sbjct: 120 CQIFAVIGSLTGIGAAITNAAIAYDRY 146

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to 11-cis-retinal.

Apis mellifera (taxid: 7460)

>sp|P08255|OPS4_DROME Opsin Rh4 OS=Drosophila melanogaster GN=Rh4 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 51/86 (59%)

Query: 37  GSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGC 96
            S + N ++ +    +KSL+TPSN+F+ N A+ DL M +  P+ + NSF++      T C
Sbjct: 67  ASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLKAPIFIYNSFHRGFALGNTWC 126

Query: 97  DIYGLFGSISGFGSAMNNAVIAYDRY 122
            I+   GS SG G+ M NA I YDRY
Sbjct: 127 QIFASIGSYSGIGAGMTNAAIGYDRY 152

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila melanogaster (taxid: 7227)

>sp|P28680|OPS3_DROPS Opsin Rh3 OS=Drosophila pseudoobscura pseudoobscura GN=Rh3 PE=1 SV=3

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 4/97 (4%)

Query: 26  IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSF 85
           +Y  F  IS  G    N ++ +     KSL+TPSN+ + N A  D  MM+  P+ + NSF
Sbjct: 63  LYIFFTVISMIG----NGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIKTPIFIYNSF 118

Query: 86  YQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
           +Q       GC I+G+ GS +G  +   NA IAYDRY
Sbjct: 119 HQGYALGHLGCQIFGVIGSYTGIAAGATNAFIAYDRY 155

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q17053|OPSD_APIME Rhodopsin, long-wavelength OS=Apis mellifera PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 1/98 (1%)

Query: 26  IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNM-PMLVVNS 84
           I G    + GF SAM N ++ Y    TKSL+TPSNLF+ N A+ +  MM  M P +V+N 
Sbjct: 54  ILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMSPPMVINC 113

Query: 85  FYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
           +Y+  +     C IY + GS+ G GS     +IA+DRY
Sbjct: 114 YYETWVLGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRY 151

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to 11-cis-retinal.

Apis mellifera (taxid: 7460)

>sp|P04950|OPS3_DROME Opsin Rh3 OS=Drosophila melanogaster GN=Rh3 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 49/85 (57%)

Query: 38  SAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCD 97
           S + N ++ +     KSL+TPSN+ + N A  D  MMV  P+ + NSF+Q       GC 
Sbjct: 72  SMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVKTPIFIYNSFHQGYALGHLGCQ 131

Query: 98  IYGLFGSISGFGSAMNNAVIAYDRY 122
           I+G+ GS +G  +   NA IAYDR+
Sbjct: 132 IFGIIGSYTGIAAGATNAFIAYDRF 156

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
124107290	379	blue-sensitive opsin precursor [Dianemob	0.699	0.226	0.643	1e-25
334363048	379	blue-sensitive opsin [Gryllus bimaculatu	0.699	0.226	0.632	4e-25
422001809	325	violet-sensitive opsin 1, partial [Eurem	0.699	0.264	0.569	1e-23
332020583	435	Opsin, blue-sensitive [Acromyrmex echina	0.666	0.188	0.573	3e-23
322801667	342	hypothetical protein SINV_01756 [Solenop	0.666	0.239	0.585	4e-23
227203900	373	violet-sensitive opsin 1 [Colias erate]	0.796	0.262	0.520	6e-23
62860650	373	violet-sensitive visual pigment [Colias	0.796	0.262	0.520	7e-23
307166135	356	Opsin, blue-sensitive [Camponotus florid	0.666	0.230	0.573	2e-22
2499365	380	RecName: Full=Opsin-2 gi|1431582|emb|CAA	0.699	0.226	0.574	2e-22
422001799	372	violet-sensitive opsin 1 [Eurema hecabe]	0.699	0.231	0.546	3e-22

>gi|124107290|dbj|BAF45422.1| blue-sensitive opsin precursor [Dianemobius nigrofasciatus]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 38  SAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNS-FYQRVIGWETGC 96
           S + N ++ +    TKSL+TPSN+F+ NQALLDL MM+ MPM V+NS FYQR IGWE GC
Sbjct: 65  SCLGNGIVLWIFATTKSLRTPSNMFVVNQALLDLLMMIEMPMFVLNSLFYQRPIGWEMGC 124

Query: 97  DIYGLFGSISGFGSAMNNAVIAYDRYR 123
           DIY L G++SG GSA+NNA IAYDRYR
Sbjct: 125 DIYALLGAVSGIGSAINNAAIAYDRYR 151

Source: Dianemobius nigrofasciatus

Species: Dianemobius nigrofasciatus

Genus: Dianemobius

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|334363048|gb|AEG78685.1| blue-sensitive opsin [Gryllus bimaculatus]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 68/87 (78%), Gaps = 1/87 (1%)

Query: 38  SAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNS-FYQRVIGWETGC 96
           S + N ++ +    TKSL+TPSN+F+ NQALLD+ MM+ MP+ V+NS FYQR IGWE GC
Sbjct: 65  SCLGNGIVLWIFGTTKSLRTPSNMFVVNQALLDMLMMIEMPLFVLNSLFYQRPIGWEVGC 124

Query: 97  DIYGLFGSISGFGSAMNNAVIAYDRYR 123
           DIY L GS+SG GSA+NNA IAYDRYR
Sbjct: 125 DIYALLGSVSGIGSAINNAAIAYDRYR 151

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|422001809|dbj|BAM67005.1| violet-sensitive opsin 1, partial [Eurema laeta]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 66/86 (76%)

Query: 38  SAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCD 97
           S   N ++ +    +KSL++PSN+F+ N AL D+CMM  MP L+VNSFYQR++GWE GCD
Sbjct: 67  SITGNGLVIWIFSTSKSLRSPSNMFVINLALFDICMMFEMPHLIVNSFYQRMLGWELGCD 126

Query: 98  IYGLFGSISGFGSAMNNAVIAYDRYR 123
           IY +FGS+SG G ++ NAVIAYDRY+
Sbjct: 127 IYAVFGSLSGIGGSITNAVIAYDRYK 152

Source: Eurema laeta

Species: Eurema laeta

Genus: Eurema

Family: Pieridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020583|gb|EGI60991.1| Opsin, blue-sensitive [Acromyrmex echinatior]

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 61/82 (74%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGL 101
           N ++ +    +KSL+TPSN+FI N A+ DL M   MPML++NSF +R IGWETGCD+Y L
Sbjct: 133 NGIVIWIFSTSKSLRTPSNIFILNLAVFDLLMATEMPMLIINSFLERTIGWETGCDVYAL 192

Query: 102 FGSISGFGSAMNNAVIAYDRYR 123
            G+ISG G A+ NA IA+DRYR
Sbjct: 193 LGAISGMGQAITNAAIAFDRYR 214

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801667|gb|EFZ22290.1| hypothetical protein SINV_01756 [Solenopsis invicta]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 63/82 (76%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGL 101
           N ++ +    +KSL+TPSN+FI N A+ DL M + MPML++NSF +R IGWETGCD+Y L
Sbjct: 77  NGIVIWIFSTSKSLRTPSNIFILNLAVFDLLMAMEMPMLIINSFLERTIGWETGCDVYAL 136

Query: 102 FGSISGFGSAMNNAVIAYDRYR 123
           FG+ISG G A+ NA IA+DRYR
Sbjct: 137 FGAISGMGQAITNAAIAFDRYR 158

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|227203900|dbj|BAH57293.1| violet-sensitive opsin 1 [Colias erate]

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/98 (52%), Positives = 68/98 (69%)

Query: 26  IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSF 85
           +  L  +I    S   N ++ +    +KSL+TPSN+F+ N AL DL MM  MP L++NSF
Sbjct: 56  LLALIYTILTISSVTGNGLVIWIFSTSKSLRTPSNMFVINLALFDLAMMGEMPHLILNSF 115

Query: 86  YQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR 123
           YQR++G+E GCDIY + GS+SG G AM NAVIAYDRY+
Sbjct: 116 YQRMLGYELGCDIYAVLGSLSGIGGAMTNAVIAYDRYK 153

Source: Colias erate

Species: Colias erate

Genus: Colias

Family: Pieridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62860650|gb|AAY16532.1| violet-sensitive visual pigment [Colias philodice]

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/98 (52%), Positives = 68/98 (69%)

Query: 26  IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSF 85
           +  L  +I    S   N ++ +    +KSL+TPSN+F+ N AL DL MM  MP L++NSF
Sbjct: 56  LLALIYTILTISSVTGNGLVIWIFSTSKSLRTPSNMFVINLALFDLAMMGEMPHLILNSF 115

Query: 86  YQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR 123
           YQR++G+E GCDIY + GS+SG G AM NAVIAYDRY+
Sbjct: 116 YQRMLGYELGCDIYAVLGSLSGIGGAMTNAVIAYDRYK 153

Source: Colias philodice

Species: Colias philodice

Genus: Colias

Family: Pieridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166135|gb|EFN60384.1| Opsin, blue-sensitive [Camponotus floridanus]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 61/82 (74%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGL 101
           N ++ +    +KSL+TPSN+FI N A+ DL M   MPML++NSF +R IGWETGCD+Y L
Sbjct: 54  NGIVIWIFSTSKSLRTPSNIFILNLAVFDLLMATEMPMLIINSFLERTIGWETGCDVYAL 113

Query: 102 FGSISGFGSAMNNAVIAYDRYR 123
            G+ISG G A+ NA IA+DRYR
Sbjct: 114 LGAISGMGQAITNAAIAFDRYR 135

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2499365|sp|Q26495.1|OPS2_SCHGR RecName: Full=Opsin-2 gi|1431582|emb|CAA56378.1| locust opsin 2 [Schistocerca gregaria]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query: 38  SAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNS-FYQRVIGWETGC 96
           S++ N ++ +    TKS++TPSN+FI N AL D+ M++ MPMLVV+S FYQR +GWE GC
Sbjct: 66  SSLGNGIVLWIYATTKSIRTPSNMFIVNLALFDVLMLLEMPMLVVSSLFYQRPVGWELGC 125

Query: 97  DIYGLFGSISGFGSAMNNAVIAYDRYR 123
           DIY   GS++G GSA+NNA IA+DRYR
Sbjct: 126 DIYAALGSVAGIGSAINNAAIAFDRYR 152

Source: Schistocerca gregaria

Species: Schistocerca gregaria

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|422001799|dbj|BAM67000.1| violet-sensitive opsin 1 [Eurema hecabe]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 64/86 (74%)

Query: 38  SAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCD 97
           S   N ++ +    +KSL++PSN+F+ N AL D+ MM  MP L+ NSFYQR++GWE GCD
Sbjct: 67  SVTGNGLVIWIFSTSKSLRSPSNMFVINLALFDIAMMFEMPHLIANSFYQRMLGWELGCD 126

Query: 98  IYGLFGSISGFGSAMNNAVIAYDRYR 123
           IY +FGS+SG G ++ NAVIAYDRY+
Sbjct: 127 IYAVFGSLSGIGGSITNAVIAYDRYK 152

Source: Eurema hecabe

Species: Eurema hecabe

Genus: Eurema

Family: Pieridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
FB|FBgn0014019	382	Rh5 "Rhodopsin 5" [Drosophila	0.699	0.225	0.453	4.4e-16
FB|FBgn0003250	378	Rh4 "Rhodopsin 4" [Drosophila	0.772	0.251	0.389	7e-14
FB|FBgn0003249	383	Rh3 "Rhodopsin 3" [Drosophila	0.691	0.221	0.4	2.6e-13
FB|FBgn0019940	369	Rh6 "Rhodopsin 6" [Drosophila	0.780	0.260	0.4	1.4e-12
FB|FBgn0003248	381	Rh2 "Rhodopsin 2" [Drosophila	0.926	0.299	0.353	1.9e-12
UNIPROTKB|Q4R1I4	706	OPN4 "Melanopsin" [Branchiosto	0.658	0.114	0.414	9.4e-11
UNIPROTKB|Q9UHM6	478	OPN4 "Melanopsin" [Homo sapien	0.715	0.184	0.348	2.2e-10
MGI|MGI:1353425	521	Opn4 "opsin 4 (melanopsin)" [M	0.715	0.168	0.348	3.3e-10
UNIPROTKB|F1NEY8	528	OPN4 "Uncharacterized protein"	0.731	0.170	0.351	4.3e-10
UNIPROTKB|E2R3W5	481	OPN4 "Uncharacterized protein"	0.788	0.201	0.336	6.1e-10

FB|FBgn0014019 Rh5 "Rhodopsin 5" [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 4.4e-16, P = 4.4e-16
 Identities = 39/86 (45%), Positives = 56/86 (65%)

Query:    38 SAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCD 97
             S   N ++ +    +KSL+TPSNL I N A+ DL M  NMP  ++N+    ++G + GCD
Sbjct:    66 SIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLFMCTNMPHYLINATVGYIVGGDLGCD 125

Query:    98 IYGLFGSISGFGSAMNNAVIAYDRYR 123
             IY L G ISG G+++ NA IA+DRY+
Sbjct:   126 IYALNGGISGMGASITNAFIAFDRYK 151

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IGI;ISS;NAS

GO:0016021 "integral to membrane" evidence=ISS;NAS

GO:0007602 "phototransduction" evidence=IGI;ISS;NAS

GO:0009588 "UV-A, blue light phototransduction" evidence=NAS

GO:0016028 "rhabdomere" evidence=IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016038 "absorption of visible light" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=IMP

FB|FBgn0003250 Rh4 "Rhodopsin 4" [Drosophila melanogaster (taxid:7227)]

 Score = 185 (70.2 bits), Expect = 7.0e-14, P = 7.0e-14
 Identities = 37/95 (38%), Positives = 54/95 (56%)

Query:    28 GLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQ 87
             G+F       S + N ++ +    +KSL+TPSN+F+ N A+ DL M +  P+ + NSF++
Sbjct:    58 GVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLKAPIFIYNSFHR 117

Query:    88 RVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
                   T C I+   GS SG G+ M NA I YDRY
Sbjct:   118 GFALGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY 152

GO:0007604 "phototransduction, UV" evidence=NAS;IDA;TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0009589 "detection of UV" evidence=TAS

GO:0007602 "phototransduction" evidence=NAS

GO:0004930 "G-protein coupled receptor activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007601 "visual perception" evidence=IEA

FB|FBgn0003249 Rh3 "Rhodopsin 3" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 34/85 (40%), Positives = 49/85 (57%)

Query:    38 SAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCD 97
             S + N ++ +     KSL+TPSN+ + N A  D  MMV  P+ + NSF+Q       GC 
Sbjct:    72 SMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVKTPIFIYNSFHQGYALGHLGCQ 131

Query:    98 IYGLFGSISGFGSAMNNAVIAYDRY 122
             I+G+ GS +G  +   NA IAYDR+
Sbjct:   132 IFGIIGSYTGIAAGATNAFIAYDRF 156

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0007604 "phototransduction, UV" evidence=NAS;IDA;TAS

GO:0009589 "detection of UV" evidence=TAS

GO:0007602 "phototransduction" evidence=NAS

GO:0004930 "G-protein coupled receptor activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016039 "absorption of UV light" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

FB|FBgn0019940 Rh6 "Rhodopsin 6" [Drosophila melanogaster (taxid:7227)]

 Score = 173 (66.0 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 40/100 (40%), Positives = 57/100 (57%)

Query:    27 YGLFG---SISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNM-PMLVV 82
             +G+ G   +I G  S   N ++ Y    +K L+TPSN+F+ N A  D  MM  M P +V+
Sbjct:    47 FGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPVVL 106

Query:    83 NSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
             N FY   I     C++YG+FGS+ G  S  +  +IAYDRY
Sbjct:   107 NGFYGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRY 146

GO:0007602 "phototransduction" evidence=IGI;ISS;NAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IGI;ISS;NAS

GO:0016028 "rhabdomere" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007601 "visual perception" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

FB|FBgn0003248 Rh2 "Rhodopsin 2" [Drosophila melanogaster (taxid:7227)]

 Score = 172 (65.6 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 41/116 (35%), Positives = 61/116 (52%)

Query:     9 VVNSFYQRVIGWETGCD-IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQA 67
             +VN ++ R    +     I GLF       S   N V+ Y    TKSL+TP+NL + N A
Sbjct:    41 LVNPYWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA 100

Query:    68 LLDLCMMVNM-PMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
               D CMM +  P++++N +Y+  +     CDIY   GS+ G  S  +  +IA+DRY
Sbjct:   101 FSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRY 156

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0007602 "phototransduction" evidence=IGI;NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007601 "visual perception" evidence=IEA

UNIPROTKB|Q4R1I4 OPN4 "Melanopsin" [Branchiostoma belcheri (taxid:7741)]

 Score = 161 (61.7 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 34/82 (41%), Positives = 48/82 (58%)

Query:    42 NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETGCDIYG 100
             NAV+ Y   ++K L+TP+N FI N AL D  M + NMP+  VNS +QR +  +  C++YG
Sbjct:   103 NAVVVYSFIKSKGLRTPANFFIINLALSDFLMNLTNMPIFAVNSAFQRWLLSDFACELYG 162

Query:   101 LFGSISGFGSAMNNAVIAYDRY 122
               G + G  S      I+ DRY
Sbjct:   163 FAGGLFGCLSINTLMAISMDRY 184

GO:0004744 "retinal isomerase activity" evidence=IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA

GO:0007602 "phototransduction" evidence=TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IDA

GO:0009584 "detection of visible light" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

UNIPROTKB|Q9UHM6 OPN4 "Melanopsin" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 31/89 (34%), Positives = 48/89 (53%)

Query:    35 GFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWE 93
             G    + N  + Y   R++SL+TP+N+FI N A+ D  M     P+   +S Y++ +  E
Sbjct:    81 GLTGMLGNLTVIYTFCRSRSLRTPANMFIINLAVSDFLMSFTQAPVFFTSSLYKQWLFGE 140

Query:    94 TGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
             TGC+ Y   G++ G  S +    IA DRY
Sbjct:   141 TGCEFYAFCGALFGISSMITLTAIALDRY 169

GO:0007601 "visual perception" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IDA

GO:0007602 "phototransduction" evidence=IDA

GO:0005502 "11-cis retinal binding" evidence=IDA

GO:0042752 "regulation of circadian rhythm" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0009584 "detection of visible light" evidence=IDA

MGI|MGI:1353425 Opn4 "opsin 4 (melanopsin)" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 31/89 (34%), Positives = 47/89 (52%)

Query:    35 GFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNM-PMLVVNSFYQRVIGWE 93
             G    + N  + Y   R + L+TP+N+FI N A+ D  M V   P+   +S Y++ +  E
Sbjct:    80 GLTGMLGNLTVIYTFCRNRGLRTPANMFIINLAVSDFLMSVTQAPVFFASSLYKKWLFGE 139

Query:    94 TGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
             TGC+ Y   G++ G  S +    IA DRY
Sbjct:   140 TGCEFYAFCGAVFGITSMITLTAIAMDRY 168

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

GO:0007602 "phototransduction" evidence=ISO;IMP

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISO;IDA;IMP

GO:0009584 "detection of visible light" evidence=ISO;IMP

GO:0009881 "photoreceptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=TAS

GO:0016056 "rhodopsin mediated signaling pathway" evidence=IDA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0048511 "rhythmic process" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

UNIPROTKB|F1NEY8 OPN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 4.3e-10, P = 4.3e-10
 Identities = 32/91 (35%), Positives = 51/91 (56%)

Query:    33 ISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNM-PMLVVNSFYQRVIG 91
             I G    + N ++ Y   R+++L+ P+N+FI N A+ D  M +   P+   NS ++R I 
Sbjct:    39 IVGITGTLGNFLVIYAFCRSRTLQKPANIFIINLAVSDFLMSITQSPVFFTNSLHKRWIF 98

Query:    92 WETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
              E GC++Y   G++ G  S +   VIA DRY
Sbjct:    99 GEKGCELYAFCGALFGITSMITLMVIALDRY 129

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IEA

UNIPROTKB|E2R3W5 OPN4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 151 (58.2 bits), Expect = 6.1e-10, P = 6.1e-10
 Identities = 33/98 (33%), Positives = 50/98 (51%)

Query:    26 IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNS 84
             I G    + G    + N ++ Y   RT+ L+TPSN+FI N A+ D  M     P+   +S
Sbjct:    67 ILGTVILLVGLTGMLGNLMVIYTFCRTRGLRTPSNMFIINLAVSDFFMSFTQAPVFFASS 126

Query:    85 FYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
              ++R +  E GC+ Y   G++ G  S +    IA DRY
Sbjct:   127 LHKRWLFGEAGCEFYAFCGALFGITSMITLTAIALDRY 164

GO:0042752 "regulation of circadian rhythm" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P90680	OPSB_APIME	No assigned EC number	0.5465	0.6991	0.2281	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	123
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	7e-12
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	0.001

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 59.6 bits (145), Expect = 7e-12
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 50  YRTKSLKTPSNLFIFNQALLDLCMMV-NMPMLVVNS-FYQRVIGWETGCDIYGLFGSISG 107
            RTK L+TP+N+F+ N A+ DL  ++   P  +          G +  C + G    ++G
Sbjct: 4   LRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFG-DALCKLVGFLFVVNG 62

Query: 108 FGSAMNNAVIAYDRY 122
           + S +    I+ DRY
Sbjct: 63  YASILLLTAISIDRY 77

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 3  VNMPMLVVNS-FYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRT 52
             P  +          G +  C + G    ++G+ S +    I+ DRY  
Sbjct: 30 TLPPWALYYLVGGDWPFG-DALCKLVGFLFVVNGYASILLLTAISIDRYLA 79

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
PHA03234	338	DNA packaging protein UL33; Provisional	99.82
KOG4219|consensus	423		99.79
PHA02834	323	chemokine receptor-like protein; Provisional	99.72
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.66
KOG4220|consensus	503		99.65
PHA03235	409	DNA packaging protein UL33; Provisional	99.63
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.61
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.54
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.37
KOG2087|consensus	363		98.74
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.95
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	97.86
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	97.81
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	97.73
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	97.45
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	97.33
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	96.64
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	95.65
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	95.46
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	94.15
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	93.5
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	89.72
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	87.98
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	82.2
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	80.09

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.82  E-value=1.4e-19  Score=132.47  Aligned_cols=102  Identities=14%  Similarity=0.010  Sum_probs=86.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhHHHh--hccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchhh
Q psy11793         21 ETGCDIYGLFGSISGFGSAMNNAVIAYDR--YRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDI   98 (123)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~--~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~~   98 (123)
                      +....+..+++.+++++|+.||++++++.  .+++++|+++|+++.|||++|++.++..|..... ..+.|..|+..|++
T Consensus        29 ~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~-~~~~w~fG~~lCk~  107 (338)
T PHA03234         29 KKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLN-REALFNFNQAFCQC  107 (338)
T ss_pred             HHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCccCchhHHHH
Confidence            34566677888889999999999999854  4666778999999999999999998775555443 34569999999999


Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         99 YGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        99 ~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ..+......++|++++++||+|||+
T Consensus       108 ~~~~~~~~~~~Si~~L~~ISiDRY~  132 (338)
T PHA03234        108 VLFIYHASCSYSICMLAIIATIRYK  132 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHe
Confidence            9999999999999999999999995

>KOG4219|consensus

Probab=99.79  E-value=2.9e-19  Score=130.57  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=100.0

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHccccccccc
Q psy11793         16 RVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWET   94 (123)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~   94 (123)
                      ....+..+..+..+++.++..+++.||+++++++..+|++|+-+|+|+.|||++|++.+.+ .|..........|.+|..
T Consensus        27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f  106 (423)
T KOG4219|consen   27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSF  106 (423)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccc
Confidence            4566788888899999999999999999999999999999999999999999999999999 888776666778999999


Q ss_pred             chhhhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         95 GCDIYGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        95 ~C~~~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      .|++..|+......+|+++|+++|+|||.
T Consensus       107 ~C~f~nf~~itav~vSVfTlvAiA~DRy~  135 (423)
T KOG4219|consen  107 YCRFVNFFPITAVFVSVFTLVAIAIDRYM  135 (423)
T ss_pred             eeeeccccchhhhhHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999994

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.72  E-value=9.4e-17  Score=116.73  Aligned_cols=99  Identities=18%  Similarity=0.145  Sum_probs=83.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhh
Q psy11793         22 TGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG  100 (123)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~  100 (123)
                      ....+..+++.+++++|++||+++++++.++|+ +++.|+++.|||++|++. .. +|..+... .++|..|+..|+...
T Consensus        26 ~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~  102 (323)
T PHA02834         26 DVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVL  102 (323)
T ss_pred             chhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHH
Confidence            344566788888899999999999998887665 457899999999999976 55 89876644 446889999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        101 LFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       101 ~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      +.......+|++++++||+|||+
T Consensus       103 ~~~~~~~~~Si~tL~~IsidRY~  125 (323)
T PHA02834        103 GVYFVGFFSNMFFVTLISIDRYI  125 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            99888999999999999999994

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.66  E-value=1.3e-15  Score=114.31  Aligned_cols=99  Identities=23%  Similarity=0.334  Sum_probs=85.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchhhhhHh
Q psy11793         23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGLF  102 (123)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~  102 (123)
                      ...+..+++.+++++|++||+++++++. +|++|+++|+++.|||++|++.....|.++... .++|..++..|+...+.
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l~lPf~i~~~-~~~W~fg~~~Ck~~~~l  174 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVIDFPFIIYNE-FDQWIFGDFMCKVISAS  174 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccchhhHHHH
Confidence            3445566778889999999999997765 478899999999999999998765589887654 45798999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcC
Q psy11793        103 GSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       103 ~~~~~~~s~~~l~~is~dRyi  123 (123)
                      .....+++++.++++++|||+
T Consensus       175 ~~~~~~~Si~~L~~isiDRYl  195 (417)
T PHA02638        175 YYIGFFSNMFLITLMSIDRYF  195 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999994

>KOG4220|consensus

Probab=99.65  E-value=1.3e-17  Score=122.36  Aligned_cols=102  Identities=19%  Similarity=0.206  Sum_probs=94.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhh
Q psy11793         22 TGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG  100 (123)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~  100 (123)
                      .+....+++...+.++.+.||+++++.+..+|+||+..|+|+.+||++|++.+.+ +|+......-+.|..|...|++..
T Consensus        28 ~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWL  107 (503)
T KOG4220|consen   28 WQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWL  107 (503)
T ss_pred             eEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHH
Confidence            4455566667777899999999999999999999999999999999999999999 999998888899999999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        101 LFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       101 ~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      .+.+...-+|+++|.+|++|||.
T Consensus       108 alDYvaSNASVmNLLiISFDRYF  130 (503)
T KOG4220|consen  108 ALDYVASNASVMNLLIISFDRYF  130 (503)
T ss_pred             HHHHHhhhhhhhhhheeeeecce
Confidence            99999999999999999999993

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.63  E-value=3.2e-15  Score=111.92  Aligned_cols=100  Identities=18%  Similarity=0.223  Sum_probs=78.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCC--CChhHHHHHHHHHHHHHHHhHHHHHHHHHHccccc--ccccch
Q psy11793         21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSL--KTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVI--GWETGC   96 (123)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l--~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~--~~~~~C   96 (123)
                      +.......+++.+++++|++||+++++++.++++.  +++.++++.|||++|++....+|..+..   +.|.  .++..|
T Consensus        29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~~lP~~i~~---~~~~~~~g~~~C  105 (409)
T PHA03235         29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFIMLS---NQGLLSGSVAGC  105 (409)
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHh---cCccccCCCCee
Confidence            33455677888888999999999999876533332  3466789999999999864338877643   2343  346899


Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         97 DIYGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        97 ~~~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ++..+....+..+|++++++||+|||+
T Consensus       106 k~~~~l~~~~~~~Si~tL~~ISiDRY~  132 (409)
T PHA03235        106 KFASLLYYASCTVGFATVALIAADRYR  132 (409)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999994

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.61  E-value=6.2e-15  Score=107.29  Aligned_cols=102  Identities=24%  Similarity=0.280  Sum_probs=88.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchhhhh
Q psy11793         21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYG  100 (123)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~~~~  100 (123)
                      +....+..+++.+++++|++||+++++++.++ ++|++.|+++.|+|++|++.++..|........++|..++..|+...
T Consensus        37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~~~~~~~~~~~~~~~C~~~~  115 (335)
T PHA03087         37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQIYYYILFQWSFGEFACKIVS  115 (335)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCCCCcHHHHHHH
Confidence            34556677788888999999999999998887 88999999999999999987766666655555667888999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        101 LFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       101 ~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      +.......+|.++++++|+|||+
T Consensus       116 ~~~~~~~~~S~~~l~~iaidRy~  138 (335)
T PHA03087        116 GLYYIGFYNSMNFITVMSVDRYI  138 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999984

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.54  E-value=3.6e-14  Score=97.65  Aligned_cols=83  Identities=29%  Similarity=0.463  Sum_probs=76.4

Q ss_pred             HHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhHhhHHHHHHHHHHHHHHHH
Q psy11793         41 NNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAY  119 (123)
Q Consensus        41 gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~  119 (123)
                      ||.++++++.++|++|++.++++.|||++|++.+.. .|........+.|..++..|+...++......++.++++++++
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~   80 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI   80 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            899999999999999999999999999999999998 8877776666778899999999999999999999999999999


Q ss_pred             HhcC
Q psy11793        120 DRYR  123 (123)
Q Consensus       120 dRyi  123 (123)
                      |||+
T Consensus        81 dRy~   84 (257)
T PF00001_consen   81 DRYL   84 (257)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            9984

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.37  E-value=7.5e-13  Score=93.72  Aligned_cols=86  Identities=19%  Similarity=0.210  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhHhhHHHHHHHHHHH
Q psy11793         36 FGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNN  114 (123)
Q Consensus        36 ~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l  114 (123)
                      ++|++||..++..+.++|+||+|++++++.+|++|+++... .|.....+  +..+.....|..+.++..++..++...+
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~   79 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM   79 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999998 88877433  3456788899999999999999999999


Q ss_pred             HHHHHHhcC
Q psy11793        115 AVIAYDRYR  123 (123)
Q Consensus       115 ~~is~dRyi  123 (123)
                      .+|++||++
T Consensus        80 l~i~iDr~i   88 (257)
T PF10320_consen   80 LAIAIDRLI   88 (257)
T ss_pred             HHHHhhhee
Confidence            999999984

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=98.74  E-value=1.6e-08  Score=73.80  Aligned_cols=89  Identities=17%  Similarity=0.213  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHH--------cccccccccchhhhhHhhH
Q psy11793         34 SGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSF--------YQRVIGWETGCDIYGLFGS  104 (123)
Q Consensus        34 ~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~--------~~~~~~~~~~C~~~~~~~~  104 (123)
                      +..+++.||.+++......+...++..+++.|+|++|++++.. .-....+..        .-.| ....+|+..+|+..
T Consensus        34 i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W-~tg~gC~~aGflav  112 (363)
T KOG2087|consen   34 IALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDW-QTGLGCPVAGFLAV  112 (363)
T ss_pred             hhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhh-hhcCCCchHHHHHH
Confidence            3789999999999988887777778999999999999999887 333333221        1224 45589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcC
Q psy11793        105 ISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       105 ~~~~~s~~~l~~is~dRyi  123 (123)
                      +..-.|++.|+.+++||++
T Consensus       113 FASElSv~~LT~itlEr~l  131 (363)
T KOG2087|consen  113 FASELSVFLLTLITLERWL  131 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999973

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.95  E-value=0.00016  Score=52.58  Aligned_cols=96  Identities=18%  Similarity=0.129  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhH
Q psy11793         23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGL  101 (123)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~  101 (123)
                      |.....++..+...++++|-++++....+.|++|++.+=++.-++++|++.... +....    ......++..|+.|++
T Consensus         5 ~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~----~~~~~~~s~lC~~Qaf   80 (303)
T PF05462_consen    5 QIRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTL----SPSAGENSFLCQFQAF   80 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCCCcchhhHhH
Confidence            344444555566889999999999999999999999999999999999987765 33222    1223445788999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhc
Q psy11793        102 FGSISGFGSAMNNAVIAYDRY  122 (123)
Q Consensus       102 ~~~~~~~~s~~~l~~is~dRy  122 (123)
                      +..++..++.+=.++||++=|
T Consensus        81 liq~f~~as~lWt~~iA~nly  101 (303)
T PF05462_consen   81 LIQFFMLASFLWTLCIAFNLY  101 (303)
T ss_pred             HHHHhhHHHHHHHHHHHHHhh
Confidence            999999999988888988654

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.86  E-value=0.00028  Score=48.44  Aligned_cols=70  Identities=16%  Similarity=0.124  Sum_probs=53.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhHhhHHHHHHHHHHHHHHHHHhc
Q psy11793         53 KSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY  122 (123)
Q Consensus        53 ~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy  122 (123)
                      ++.+.-.+-++.||.++|++.++. +.........+....++..|..|+++......++-+...+||+.=|
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~  100 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTF  100 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677999999999999998 4433333333444457799999999999999999999999988643

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.81  E-value=0.00027  Score=50.37  Aligned_cols=85  Identities=18%  Similarity=0.275  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-H----HHHHHHHHcccccccccchh-hhhHhhHHHHH
Q psy11793         35 GFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-M----PMLVVNSFYQRVIGWETGCD-IYGLFGSISGF  108 (123)
Q Consensus        35 ~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~----p~~~~~~~~~~~~~~~~~C~-~~~~~~~~~~~  108 (123)
                      .++|++.|..+++.+.|.+++|++-+.+-.+.|++|.+.... .    |..+.    +.....+.... ..+.....+-.
T Consensus         4 s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~----~~~~~~~~~~s~~~g~~~~~~y~   79 (274)
T PF10328_consen    4 SIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLL----DISFLPSSLNSIIFGFIGMFCYF   79 (274)
T ss_pred             eHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----ccccCchHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999998876 2    43333    22223333333 33666667777


Q ss_pred             HHHHHHHHHHHHhcC
Q psy11793        109 GSAMNNAVIAYDRYR  123 (123)
Q Consensus       109 ~s~~~l~~is~dRyi  123 (123)
                      .+..+-.+||++|+.
T Consensus        80 ~~~~~~~liaiNRf~   94 (274)
T PF10328_consen   80 IGPLSHLLIAINRFC   94 (274)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            889999999999973

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=97.73  E-value=0.0014  Score=47.65  Aligned_cols=96  Identities=13%  Similarity=0.085  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhh----ccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhh
Q psy11793         24 CDIYGLFGSISGFGSAMNNAVIAYDRY----RTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDI   98 (123)
Q Consensus        24 ~~~~~~~~~~~~~~~~~gN~~~i~~~~----~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~   98 (123)
                      .....++..+..++|++||+.++.+..    |+|++ +|.+..+.+||+++++.... ........+.......+..++.
T Consensus         6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l-~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (303)
T PF05296_consen    6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKL-SPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKI   84 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence            445566777778999999999987755    33333 49999999999999998877 4444444444444455667777


Q ss_pred             hhHhhHHHHHHHHHHHHHHHHH
Q psy11793         99 YGLFGSISGFGSAMNNAVIAYD  120 (123)
Q Consensus        99 ~~~~~~~~~~~s~~~l~~is~d  120 (123)
                      ..++-.+....+.+.-+.+++-
T Consensus        85 ~~~~~~f~~~~s~W~tt~Lsvf  106 (303)
T PF05296_consen   85 IDFLWMFSNSSSLWFTTWLSVF  106 (303)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHH
Confidence            7777777888888888887763

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.45  E-value=0.0013  Score=47.71  Aligned_cols=85  Identities=19%  Similarity=0.125  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHhHHHhhccCCCCC-hhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccch------------hhhh
Q psy11793         35 GFGSAMNNAVIAYDRYRTKSLKT-PSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGC------------DIYG  100 (123)
Q Consensus        35 ~~~~~~gN~~~i~~~~~~~~l~~-~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C------------~~~~  100 (123)
                      .++|+++|.+-+.+..| |++|+ +.|.++..+|++|+..... .+..........   .+..|            ....
T Consensus         7 ~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~---~~~~C~~~~sy~~~~~~~~~~   82 (318)
T PF10324_consen    7 SIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFY---EDDECIPPYSYFWAYFKLIME   82 (318)
T ss_pred             eHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cccCCCCcccHHHHHHHHHHH
Confidence            57899999998876644 77776 8899999999999999998 777664443321   11222            2334


Q ss_pred             HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        101 LFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       101 ~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      .....+--.|.+.-++||..|++
T Consensus        83 ~l~~~~~~~S~WL~V~mA~iR~l  105 (318)
T PF10324_consen   83 SLSDIFRRISIWLGVLMALIRYL  105 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667788999999999999973

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=97.33  E-value=0.0055  Score=44.90  Aligned_cols=100  Identities=15%  Similarity=0.065  Sum_probs=71.5

Q ss_pred             cccc-chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH--HHHHHHHHHcccccccc
Q psy11793         17 VIGW-ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN--MPMLVVNSFYQRVIGWE   93 (123)
Q Consensus        17 ~~~~-~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~--~p~~~~~~~~~~~~~~~   93 (123)
                      +... +++++..++...+.+++..+-+...+.++.+++..|.|.|-.+.-|++.|+.....  .-.....+      .|.
T Consensus        24 ~~~~~g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i------~G~   97 (313)
T PF10321_consen   24 WSESYGVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAI------FGA   97 (313)
T ss_pred             cccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh------cCc
Confidence            4444 78889999999999999999999999999988777789999999999999988765  22222111      244


Q ss_pred             cchhhhh------HhhHHHHHHHHHHHHHHHHHhc
Q psy11793         94 TGCDIYG------LFGSISGFGSAMNNAVIAYDRY  122 (123)
Q Consensus        94 ~~C~~~~------~~~~~~~~~s~~~l~~is~dRy  122 (123)
                      ..|....      .....+=.++...-..++++|.
T Consensus        98 vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~  132 (313)
T PF10321_consen   98 VFCSYPRFIYIMGCIALGSWCGSCIICILLAINRC  132 (313)
T ss_pred             cccCCchHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence            5564433      2233334556667777888884

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.64  E-value=0.0057  Score=43.77  Aligned_cols=63  Identities=14%  Similarity=0.209  Sum_probs=52.2

Q ss_pred             CChhHHHHHHHHHHHHHHHhH--HHHHHHHHHcccccccccchhhhhHhhHHHHHHHHHHHHHHHHH
Q psy11793         56 KTPSNLFIFNQALLDLCMMVN--MPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYD  120 (123)
Q Consensus        56 ~~~~~~~l~~La~~dl~~~~~--~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~d  120 (123)
                      .+|.|..+.||++++.+..+.  .|.... . .+....++.+||...|..-..-+.|+.+.+.+|.-
T Consensus         8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~-~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvf   72 (265)
T PF03402_consen    8 LKPIDLILIHLALANILVLLSRGIPQTMA-F-FGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVF   72 (265)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhHHHHHH-H-hhcccCCCceeeeeeeehHHhchhhHHhhhHHHHH
Confidence            459999999999999999988  886543 2 23345689999999999999999999999888764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.65  E-value=0.12  Score=37.18  Aligned_cols=92  Identities=13%  Similarity=0.011  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHhhccCCC-CChhHHHHHHHHHHHHHHHhH-HHHHHHHHHccc-----------ccccccch
Q psy11793         30 FGSISGFGSAMNNAVIAYDRYRTKSL-KTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQR-----------VIGWETGC   96 (123)
Q Consensus        30 ~~~~~~~~~~~gN~~~i~~~~~~~~l-~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~-----------~~~~~~~C   96 (123)
                      ++.+.+.+|+.-|.+.++.+.++..- -++..+++.|-|+.|++.... .-.... .....           ...++..|
T Consensus         4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R-~i~~~~~~~~~~~GpC~~~~~~~C   82 (292)
T PF10317_consen    4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPR-IIPNGTSIAVISYGPCRYFGPWFC   82 (292)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCCCcEEEEeeecceecCcHHH
Confidence            34566889999999999888865432 347788999999999998876 222211 11221           12445556


Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHHHhc
Q psy11793         97 DIYGLFGSISGFGSAMNNAVIAYDRY  122 (123)
Q Consensus        97 ~~~~~~~~~~~~~s~~~l~~is~dRy  122 (123)
                      .........+...+.+.+..--+-||
T Consensus        83 ~~~y~~~~~~~~~s~~~i~~sf~yRy  108 (292)
T PF10317_consen   83 FFCYHIMLHFSIHSGWSIILSFYYRY  108 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555554555555555555555565

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.46  E-value=0.41  Score=35.12  Aligned_cols=94  Identities=11%  Similarity=0.102  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHH---HHHHHccc----ccccccchhhhh
Q psy11793         29 LFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPML---VVNSFYQR----VIGWETGCDIYG  100 (123)
Q Consensus        29 ~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~---~~~~~~~~----~~~~~~~C~~~~  100 (123)
                      .+-.++.++|+..+...++...+++..|....+++....++.++.+.. .-.-   +..+....    ...+...|....
T Consensus        21 ~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR  100 (324)
T PF10292_consen   21 IFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILR  100 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHH
Confidence            344555677777777777778788888988888888888888888765 3222   23222211    223556687778


Q ss_pred             HhhHHHHHHHHHHHHHHHHHhc
Q psy11793        101 LFGSISGFGSAMNNAVIAYDRY  122 (123)
Q Consensus       101 ~~~~~~~~~s~~~l~~is~dRy  122 (123)
                      ....++......+..++++||+
T Consensus       101 ~~~~~~~~~~~~t~v~l~IER~  122 (324)
T PF10292_consen  101 IPYNFGLFLVSFTTVSLVIERT  122 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999996

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.15  E-value=0.89  Score=32.79  Aligned_cols=98  Identities=17%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcc--cccc-cccchhhhh
Q psy11793         25 DIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQ--RVIG-WETGCDIYG  100 (123)
Q Consensus        25 ~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~--~~~~-~~~~C~~~~  100 (123)
                      .....+.++...+....|...++.+..+|+.+++...++---...|.+.+.. .+.........  .... .+..=...+
T Consensus         6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~   85 (273)
T PF10316_consen    6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIG   85 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehh
Confidence            3445566677888999999999998877773334444555567889999988 55443333221  1111 111223444


Q ss_pred             HhhHHHHHHHHHHHHHHHHHhc
Q psy11793        101 LFGSISGFGSAMNNAVIAYDRY  122 (123)
Q Consensus       101 ~~~~~~~~~s~~~l~~is~dRy  122 (123)
                      +...............+|+||-
T Consensus        86 ~p~~~~~~iR~~l~~~Ia~dR~  107 (273)
T PF10316_consen   86 WPSSNLGSIRSILALIIALDRV  107 (273)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            5666667788899999999994

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.50  E-value=0.05  Score=37.81  Aligned_cols=87  Identities=14%  Similarity=-0.019  Sum_probs=0.8

Q ss_pred             HHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhHhhHHHHHHHHHH
Q psy11793         35 GFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMN  113 (123)
Q Consensus        35 ~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~  113 (123)
                      ..+++.+-.+++......|++|++.+....||++++++.... ...... ...+..+..+..|.....+.+++..++..=
T Consensus        11 ~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~-~~~~~~~~~~~~C~~~a~~~hy~~la~f~W   89 (242)
T PF00002_consen   11 CSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQ-TFSPISTTNHCLCRAIAILLHYFFLASFFW   89 (242)
T ss_dssp             HH------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhh-ccccccccccccchhhhhHhHHHHHHHHHH
Confidence            344555545555555556788887788889999999887765 322111 111111112335999999999988888777


Q ss_pred             HHHHHHHhc
Q psy11793        114 NAVIAYDRY  122 (123)
Q Consensus       114 l~~is~dRy  122 (123)
                      +.+.++|-|
T Consensus        90 m~~~~~~l~   98 (242)
T PF00002_consen   90 MLVEAFYLY   98 (242)
T ss_dssp             ---------
T ss_pred             HHHHHHHhh
Confidence            777777654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=89.72  E-value=3.9  Score=29.40  Aligned_cols=69  Identities=12%  Similarity=0.118  Sum_probs=44.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHhH-HHHHHHHH---Hccc-ccccccchhhhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         55 LKTPSNLFIFNQALLDLCMMVN-MPMLVVNS---FYQR-VIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        55 l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~---~~~~-~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ++++-+-++.+-+++|++.... ........   ..+- ...++..-+.................+.+|..||.
T Consensus        29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~  102 (283)
T PF10323_consen   29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYL  102 (283)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Confidence            5678899999999999998765 22111111   1110 11222334555666677788888889999999973

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=87.98  E-value=7.3  Score=27.42  Aligned_cols=89  Identities=13%  Similarity=0.171  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHhHHHhhccCC--C-CChhHHHHHHHHHHHHHHHhH-HHHH-HHHH-------HcccccccccchhhhhH
Q psy11793         34 SGFGSAMNNAVIAYDRYRTKS--L-KTPSNLFIFNQALLDLCMMVN-MPML-VVNS-------FYQRVIGWETGCDIYGL  101 (123)
Q Consensus        34 ~~~~~~~gN~~~i~~~~~~~~--l-~~~~~~~l~~La~~dl~~~~~-~p~~-~~~~-------~~~~~~~~~~~C~~~~~  101 (123)
                      -++.+++.+..+++.+.++|+  . +++-+-+...=++.|++.-.. .+.. +...       .....+..+...+...+
T Consensus         7 Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~   86 (275)
T PF02118_consen    7 YGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYF   86 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHH
Confidence            355677777788888877776  3 445555555555566655443 3221 1111       00001223445667777


Q ss_pred             hhHHHHHHHHHHHHHHHHHhc
Q psy11793        102 FGSISGFGSAMNNAVIAYDRY  122 (123)
Q Consensus       102 ~~~~~~~~s~~~l~~is~dRy  122 (123)
                      +...+..+.......++++|+
T Consensus        87 l~~~~~~~Q~~~~~~is~nR~  107 (275)
T PF02118_consen   87 LQYYFAYVQYLSTILISLNRF  107 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999995

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=82.20  E-value=20  Score=27.36  Aligned_cols=102  Identities=16%  Similarity=0.029  Sum_probs=61.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCC----CCCh--hHHHHHHHHHHHHHHHhH-HHHHHHHHHccc-cc---
Q psy11793         22 TGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKS----LKTP--SNLFIFNQALLDLCMMVN-MPMLVVNSFYQR-VI---   90 (123)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~----l~~~--~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~-~~---   90 (123)
                      .+...+-.+.+..+.+|+.|-...+.--.+...    .++|  ..-.+..++++|++.++. +......+-..+ ..   
T Consensus        24 Fq~~~f~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s  103 (405)
T PF02101_consen   24 FQPDAFNAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSIS  103 (405)
T ss_pred             cChhhhhhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCccccccc
Confidence            344555666777778888876666553222111    1112  234677899999998877 555444332211 10   


Q ss_pred             -------ccccchhhhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         91 -------GWETGCDIYGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        91 -------~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                             .+...|....-...++..++.+=..+-|+|-|+
T Consensus       104 ~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~L  143 (405)
T PF02101_consen  104 DVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYL  143 (405)
T ss_pred             CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                   133678776666667777787778888888663

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=80.09  E-value=21  Score=26.33  Aligned_cols=95  Identities=14%  Similarity=0.162  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhccCCCCC-hhHHHHHHHHHHHHHHHhH--HHHH-HHH-HHccc----ccccccchhh
Q psy11793         28 GLFGSISGFGSAMNNAVIAYDRYRTKSLKT-PSNLFIFNQALLDLCMMVN--MPML-VVN-SFYQR----VIGWETGCDI   98 (123)
Q Consensus        28 ~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~-~~~~~l~~La~~dl~~~~~--~p~~-~~~-~~~~~----~~~~~~~C~~   98 (123)
                      ..+..++.+++.......+-...++.-.+. +...++.+|..+++-....  .... +.. +...+    ....+..|..
T Consensus        24 ~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC~~  103 (328)
T PF02117_consen   24 QIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSECFP  103 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCceee
Confidence            344455566777776777777767666665 4466777777777766554  2222 222 22111    3356778888


Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHhc
Q psy11793         99 YGLFGSISGFGSAMNNAVIAYDRY  122 (123)
Q Consensus        99 ~~~~~~~~~~~s~~~l~~is~dRy  122 (123)
                      ......++....++...++.+||-
T Consensus       104 ~~~~~~~~~~~~~~~q~aL~idRl  127 (328)
T PF02117_consen  104 YYYFYYFTNSGMIFIQFALTIDRL  127 (328)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888999999999994

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	123
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		2e-09
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		2e-09
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		3e-04

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 51  RTKSLKTPSNLFIFNQALLDLCM-MVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGF 108
           +TKSL+TP+N+FI N A  D    +VN  P++ ++ F ++ I     C +YG  G I GF
Sbjct: 60  KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 119
Query: 109 GSAMNNAVIAYDRY 122
            S M  A+I+ DRY
Sbjct: 120 MSIMTMAMISIDRY 133

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 51  RTKSLKTPSNLFIFNQALLDLCM-MVN-MPMLVVNSFYQRVIGWETGCDIYGLFGSISGF 108
           +TKSL+TP+N+FI N A  D    +VN  P++ ++ F ++ I     C +YG  G I GF
Sbjct: 61  KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGF 120
Query: 109 GSAMNNAVIAYDRY 122
            S M  A+I+ DRY
Sbjct: 121 MSIMTMAMISIDRY 134

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 26  IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSF 85
           I GL+ ++   G  + N ++ Y   R   +KT +N++IFN AL D  +++ +P       
Sbjct: 128 IVGLYLAVC-VGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPF------ 180
Query: 86  YQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
                    G DI  L G    FG+A+   VIA D Y
Sbjct: 181 --------QGTDI--LLG-FWPFGNALCKTVIAIDYY 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-23
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-11
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	4e-21
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	2e-10
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	8e-08
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	2e-06
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	2e-06
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	8e-06
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	1e-05
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	1e-05
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	2e-05
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	2e-05
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	2e-05
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	3e-05
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	4e-05
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	5e-05
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	1e-04

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 92.3 bits (229), Expect = 2e-23
 Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 6/99 (6%)

Query: 26  IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMV--NMPMLVVN 83
             G+ G I   G    N ++ Y   +TKSL+TP+N+FI N A  D    +    P++ ++
Sbjct: 40  FIGICGIIGCGG----NGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTIS 95

Query: 84  SFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
            F ++ I     C +YG  G I GF S M  A+I+ DRY
Sbjct: 96  CFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRY 134

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 1   MMV--NMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRT 52
             +    P++ ++ F ++ I     C +YG  G I GF S M  A+I+ DRY  
Sbjct: 83  FSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNV 136

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 85.1 bits (211), Expect = 4e-21
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 26  IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMV-NMPMLVVNS 84
              L   +        N +  Y   + K L+TP N  + N A+ DL M+       +  S
Sbjct: 44  YMFLLIMLGFPI----NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99

Query: 85  FYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
            +   +   TGC++ G F ++ G  +  +  V+A +RY
Sbjct: 100 LHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERY 137

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 1   MMVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRT 52
           +       +  S +   +   TGC++ G F ++ G  +  +  V+A +RY  
Sbjct: 88  VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVV 139

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 48.3 bits (114), Expect = 8e-08
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 19  GWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCM-MVNM 77
             E    +  +   +      + N  +    ++TK    P   FI N AL DL   +   
Sbjct: 58  DKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYT 117

Query: 78  PMLVVNSFYQRVIGWETGCDIYGLFGSISGFGSAMNNAVIAYDRY 122
             L+++      +       +      ++   S  +   IA +RY
Sbjct: 118 ANLLLSGATTYKLTPAQ-WFLREGSMFVALSASVFSLLAIAIERY 161

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 50  YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETG---CDIYGLFGSI 105
           +   +L+  +N F+ + A  D+ + ++ +P  +         G+      C     F  +
Sbjct: 47  WLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT-----ISTGFCAACHGCLFIACFVLV 101

Query: 106 SGFGSAMNNAVIAYDRY 122
               S  +   IA DRY
Sbjct: 102 LTQSSIFSLLAIAIDRY 118

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYGL 101
           N ++       K L++ ++ +  + ++ DL  ++ +P   V++      G    C    +
Sbjct: 66  NGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFG-NFLCKAVHV 124

Query: 102 FGSISGFGSAMNNAVIAYDRY 122
             +++ + S    A I+ DRY
Sbjct: 125 IYTVNLYSSVWILAFISLDRY 145

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 42.4 bits (99), Expect = 8e-06
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 50  YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETG---CDIYGLFGSI 105
           +   +L+  +N F+ + A  D+ + ++ +P  +  S      G+      C     F  +
Sbjct: 57  WLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS-----TGFCAACHGCLFIACFVLV 111

Query: 106 SGFGSAMNNAVIAYDRY 122
               S  +   IA DRY
Sbjct: 112 LTQSSIFSLLAIAIDRY 128

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 50  YRTKSLKTPSNLFIFNQALLDLCMMV-NMPMLVVNSFYQRVIGWETGCDIYGLFGSISGF 108
              K ++T +N F+ N A  +  M   N  +    + +         C  +  F   + F
Sbjct: 58  LAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVF 117

Query: 109 GSAMNNAVIAYDRYR 123
            S  +   +A+DRY 
Sbjct: 118 ASIYSMTAVAFDRYM 132

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 50  YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGF 108
            + + L+T +N FI + A  DL M +  +P    +   +        C+ +     +   
Sbjct: 208 AKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVT 267

Query: 109 GSAMNNAVIAYDRY 122
            S     VIA DRY
Sbjct: 268 ASIETLCVIAVDRY 281

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 29  LFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQR 88
           L+  +   G   N  V+ Y   R   +KT +N++IFN AL D      +P   VN     
Sbjct: 23  LYSIVCVVGLFGNFLVM-YVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGT 81

Query: 89  VIGWETG---CDIYGLFGSISGFGSAMNNAVIAYDRY 122
              W  G   C I       + F S      ++ DRY
Sbjct: 82  ---WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRY 115

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 50  YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETG---CDIYGLFGSI 105
              + L+T +N F+F+ A  DL + + +M +  + +       W  G   CD++     +
Sbjct: 49  KVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGY---WPLGPVVCDLWLALDYV 105

Query: 106 SGFGSAMNNAVIAYDRYR 123
               S MN  +I++DRY 
Sbjct: 106 VSNASVMNLLIISFDRYF 123

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 50  YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETG---CDIYGLFGSI 105
            + ++L+T +N  + + A+ DL +  + MP +V       V  W      CD++     +
Sbjct: 64  LKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGV--WNFSRICCDVFVTLDVM 121

Query: 106 SGFGSAMNNAVIAYDRYR 123
               S  N   I+ DRY 
Sbjct: 122 MCTASIWNLCAISIDRYT 139

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 50  YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETG---CDIYGLFGSI 105
              + L T  NL+I + ++ DL +  V MPM ++     +   W  G   C  +     +
Sbjct: 34  RSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSK---WSLGRPLCLFWLSMDYV 90

Query: 106 SGFGSAMNNAVIAYDRYR 123
           +   S  +  ++  DRYR
Sbjct: 91  ASTASIFSVFILCIDRYR 108

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 40.5 bits (94), Expect = 5e-05
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 26  IYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNS 84
           +  +   I       N  VI     + + L+T +N FI + A  DL M +  +P    + 
Sbjct: 43  MGIVMSLIVLAIVFGNVLVIT-AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHI 101

Query: 85  FYQRVIGWETG---CDIYGLFGSISGFGSAMNNAVIAYDRYR 123
             +    W  G   C+ +     +    S     VIA DRY 
Sbjct: 102 LMKM---WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYF 140

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 50  YRTKSLKTPSNLFIFNQALLDLCM-MVNMPMLVVNSFYQRVIGWETGCDIYGLFGSISGF 108
             T+ L+T +NLFI + A  DL + ++ +P           +     C+++     +   
Sbjct: 37  GSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVT 96

Query: 109 GSAMNNAVIAYDRY 122
            S     VIA DRY
Sbjct: 97  ASIETLCVIAIDRY 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.83
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.82
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.8
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.8
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.8
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.79
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.79
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.79
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.78
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.78
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.77
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.77
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.77
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.76
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.75
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.75
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.75
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.74
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	96.38
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	96.06

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.83  E-value=9.9e-20  Score=128.19  Aligned_cols=105  Identities=15%  Similarity=0.178  Sum_probs=92.2

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchh
Q psy11793         18 IGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCD   97 (123)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~   97 (123)
                      |.++.+..+..+.+.+++++|++||+++++++.++|++|+++|+++.|||++|++.+...|....... ++|..++..|+
T Consensus         5 e~~~~~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~~p~~~~~~~-~~~~~~~~~c~   83 (296)
T 2lnl_A            5 ETETLNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKV-NGWIFGTFLCK   83 (296)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-SSSCCSSHHHH
T ss_pred             cccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHhhhHHHhhcc-CCCccchhHHH
Confidence            34455667777888888999999999999999999999999999999999999998766666665444 46999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         98 IYGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        98 ~~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ...+....+..+|+++++++|+|||+
T Consensus        84 ~~~~~~~~~~~~s~~~l~~isidRy~  109 (296)
T 2lnl_A           84 VVSLLKEVNFYSGILLLACISVDRYL  109 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999983

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.82  E-value=9.4e-20  Score=134.68  Aligned_cols=105  Identities=20%  Similarity=0.200  Sum_probs=95.6

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchh
Q psy11793         19 GWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCD   97 (123)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~   97 (123)
                      ..+....+..+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.++. .|..+.....+.|..++..|+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~   97 (467)
T 3uon_A           18 YKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCD   97 (467)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHh
Confidence            3445567777888888999999999999999999999999999999999999999888 999888888888999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         98 IYGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        98 ~~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      +..++..++..+|++++++||+|||+
T Consensus        98 ~~~~~~~~~~~~s~~~l~~isidRy~  123 (467)
T 3uon_A           98 LWLALDYVVSNASVMNLLIISFDRYF  123 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999984

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.80  E-value=4.1e-19  Score=131.01  Aligned_cols=106  Identities=23%  Similarity=0.178  Sum_probs=94.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchh
Q psy11793         18 IGWETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCD   97 (123)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~   97 (123)
                      ........+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++.+|..+.....+.|..++..|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~p~~~~~~~~~~~~~~~~~C~   90 (464)
T 4dkl_A           11 SPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILCK   90 (464)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCSHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhh
Confidence            33445567777888888999999999999999999999999999999999999998877888877777788999999999


Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         98 IYGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        98 ~~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      +..++..++..+|++++++||+|||+
T Consensus        91 ~~~~~~~~~~~~s~~~l~~is~dRy~  116 (464)
T 4dkl_A           91 IVISIDYYNMFTSIFTLCTMSVDRYI  116 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999984

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.80  E-value=1.1e-18  Score=125.67  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=92.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhh
Q psy11793         21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIY   99 (123)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~   99 (123)
                      +.+..+..+++.+++++|++||+++++++.++|++|++.|+++.|||++|++.+.. .|........+.|..++..|+..
T Consensus        29 ~~~~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~  108 (364)
T 2ks9_A           29 AWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFH  108 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhH
Confidence            33445557778888999999999999999999999999999999999999999888 88877766777899999999999


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        100 GLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       100 ~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      .++...+..+|+++++++|+|||+
T Consensus       109 ~~~~~~~~~~s~~~l~~isidRy~  132 (364)
T 2ks9_A          109 NFFPIAAVFASIYSMTAVAFDRYM  132 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999984

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.80  E-value=4.9e-19  Score=133.17  Aligned_cols=103  Identities=21%  Similarity=0.189  Sum_probs=94.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhh
Q psy11793         21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIY   99 (123)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~   99 (123)
                      +....+..+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.++. +|..+.....+.|..++..|++.
T Consensus        37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~  116 (500)
T 2rh1_A           37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFW  116 (500)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHH
Confidence            34455567778888999999999999999999999999999999999999999999 99988877778899999999999


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        100 GLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       100 ~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      .++..++..+|++++++||+|||+
T Consensus       117 ~~~~~~~~~~Si~~l~~isidRy~  140 (500)
T 2rh1_A          117 TSIDVLCVTASIETLCVIAVDRYF  140 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999984

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.79  E-value=2.4e-18  Score=122.79  Aligned_cols=102  Identities=23%  Similarity=0.293  Sum_probs=93.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhh
Q psy11793         22 TGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYG  100 (123)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~  100 (123)
                      ....+..+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.+.. .|........+.|..++..|+...
T Consensus        36 ~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  115 (349)
T 1u19_A           36 WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG  115 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHHHH
Confidence            3455667778888999999999999999999999999999999999999999999 998887777778999999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        101 LFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       101 ~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ++...+..+|+++++++|+|||+
T Consensus       116 ~~~~~~~~~s~~~l~~isidRy~  138 (349)
T 1u19_A          116 FFATLGGEIALWSLVVLAIERYV  138 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999984

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.79  E-value=6.5e-19  Score=133.03  Aligned_cols=101  Identities=21%  Similarity=0.243  Sum_probs=86.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCC---ChhHHHHHHHHHHHHHHHhH-HHHHHHHHHc--ccccccccch
Q psy11793         23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLK---TPSNLFIFNQALLDLCMMVN-MPMLVVNSFY--QRVIGWETGC   96 (123)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~---~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~--~~~~~~~~~C   96 (123)
                      ...+..+++.+++++|++||+++++++.++|++|   +++|+|+.|||++|++.++. +|..+.....  +.|..|+..|
T Consensus        31 ~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C  110 (510)
T 4grv_A           31 SKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGC  110 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHH
Confidence            3456667778889999999999999998876654   68899999999999999999 9998876543  4589999999


Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         97 DIYGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        97 ~~~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ++..++...+..+|++++++||+|||+
T Consensus       111 ~~~~~~~~~~~~~S~~~l~~is~dRy~  137 (510)
T 4grv_A          111 RGYYFLRDACTYATALNVASLSVARYL  137 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheE
Confidence            999999999999999999999999984

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.79  E-value=1e-18  Score=132.11  Aligned_cols=102  Identities=19%  Similarity=0.065  Sum_probs=91.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhh
Q psy11793         21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIY   99 (123)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~   99 (123)
                      +.+..+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++. .|..+.. ....|..+...|++.
T Consensus        60 ~~~~~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~  138 (520)
T 3v2y_A           60 ENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLR  138 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchH
Confidence            33446777888888999999999999999999999999999999999999999999 8877765 455688899999999


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        100 GLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       100 ~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      .++..++.++|++++++||+|||+
T Consensus       139 ~~~~~~~~~~S~~~l~~isidRy~  162 (520)
T 3v2y_A          139 EGSMFVALSASVFSLLAIAIERYI  162 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999994

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.78  E-value=5e-19  Score=131.43  Aligned_cols=104  Identities=13%  Similarity=-0.049  Sum_probs=91.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHH-HHHHHHcccccccccchhh
Q psy11793         20 WETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPM-LVVNSFYQRVIGWETGCDI   98 (123)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~-~~~~~~~~~~~~~~~~C~~   98 (123)
                      .+....+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++..|. .......+.|..++..|++
T Consensus        16 ~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~~~~~~~~~~~C~~   95 (484)
T 3vw7_A           16 SSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFGSELCRF   95 (484)
T ss_dssp             CHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTSCCCSCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHhH
Confidence            455566777788888999999999999999999999999999999999999999776544 4444444579999999999


Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         99 YGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        99 ~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ..++..++..+|++++++||+|||+
T Consensus        96 ~~~~~~~~~~~S~~~l~~is~dRy~  120 (484)
T 3vw7_A           96 VTAAFYCNMYASILLMTVISIDRFL  120 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhe
Confidence            9999999999999999999999984

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.78  E-value=6.9e-19  Score=129.57  Aligned_cols=101  Identities=19%  Similarity=0.186  Sum_probs=91.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhH
Q psy11793         23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGL  101 (123)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~  101 (123)
                      ...+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++. +|..+.....+.|..++..|++..+
T Consensus         7 ~~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~   86 (452)
T 3rze_A            7 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLS   86 (452)
T ss_dssp             --CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHH
Confidence            344455667777999999999999999999999999999999999999999888 9999988888889999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcC
Q psy11793        102 FGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       102 ~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      +..++..+|++++++||+|||+
T Consensus        87 ~~~~~~~~s~~~l~~is~dRy~  108 (452)
T 3rze_A           87 MDYVASTASIFSVFILCIDRYR  108 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999984

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.77  E-value=7e-19  Score=123.69  Aligned_cols=104  Identities=20%  Similarity=0.128  Sum_probs=94.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhh
Q psy11793         20 WETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDI   98 (123)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~   98 (123)
                      ++.......+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.+.. .|........+.|..++..|+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~   86 (315)
T 4amj_A            7 SQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCEL   86 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHH
Confidence            344556677778888999999999999999999999999999999999999999888 9988887777889999999999


Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         99 YGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        99 ~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ..++...+..+|.++++++|+|||+
T Consensus        87 ~~~~~~~~~~~S~~~l~~isidRy~  111 (315)
T 4amj_A           87 WTSLDVLCVTASIETLCVIAIDRYL  111 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999984

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.77  E-value=4.1e-18  Score=127.03  Aligned_cols=102  Identities=16%  Similarity=0.160  Sum_probs=91.4

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcccccccccchhhhh
Q psy11793         21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQRVIGWETGCDIYG  100 (123)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~~p~~~~~~~~~~~~~~~~~C~~~~  100 (123)
                      .....+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++.+|..+..... .|..++..|++..
T Consensus        45 ~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~p~~~~~~~~-~~~~~~~~C~~~~  123 (502)
T 3odu_A           45 NFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVA-NWYFGNFLCKAVH  123 (502)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHT-CCCSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCchhhhhHH
Confidence            445667778888889999999999999999999999999999999999999996448988876554 6889999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        101 LFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       101 ~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ++..++..+|++++++||+|||+
T Consensus       124 ~~~~~~~~~s~~~l~~is~dRy~  146 (502)
T 3odu_A          124 VIYTVNLYSSVWILAFISLDRYL  146 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999984

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.77  E-value=1.6e-18  Score=128.67  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=88.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHc-ccccccccchhhhh
Q psy11793         23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFY-QRVIGWETGCDIYG  100 (123)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~-~~~~~~~~~C~~~~  100 (123)
                      ...+..+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.++. +|..+..... +.|..++..|++..
T Consensus        37 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~  116 (481)
T 3pbl_A           37 PHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFV  116 (481)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHH
Confidence            344555677778999999999999999999999999999999999999999999 9988766555 56899999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        101 LFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       101 ~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ++..++..++++++++||+|||+
T Consensus       117 ~~~~~~~~~s~~~l~~is~dRy~  139 (481)
T 3pbl_A          117 TLDVMMCTASIWNLCAISIDRYT  139 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999984

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.76  E-value=3.4e-18  Score=126.81  Aligned_cols=102  Identities=20%  Similarity=0.250  Sum_probs=90.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhh
Q psy11793         20 WETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDI   98 (123)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~   98 (123)
                      +.....+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++. +|..+...  ..|..+...|++
T Consensus        17 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~--~~~~~~~~~C~~   94 (488)
T 3eml_A           17 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLF   94 (488)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT--TCCEECHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccchHHHH
Confidence            444556777788888999999999999999999999999999999999999999888 99877643  357888999999


Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         99 YGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        99 ~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ..++..++..+|++++++||+|||+
T Consensus        95 ~~~~~~~~~~~s~~~l~~is~dRy~  119 (488)
T 3eml_A           95 IACFVLVLTQSSIFSLLAIAIDRYI  119 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhe
Confidence            9999999999999999999999984

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.75  E-value=5.4e-18  Score=124.65  Aligned_cols=102  Identities=20%  Similarity=0.250  Sum_probs=90.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhh
Q psy11793         20 WETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDI   98 (123)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~   98 (123)
                      +.....+..+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++. +|..+...  ..|..+...|++
T Consensus        27 ~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~~~~C~~  104 (447)
T 4eiy_A           27 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLF  104 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEEHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCccHHHH
Confidence            344556677788888999999999999999999999999999999999999999888 99877633  357778899999


Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793         99 YGLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus        99 ~~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ..++...+..+|++++++||+|||+
T Consensus       105 ~~~~~~~~~~~S~~~l~~is~dRy~  129 (447)
T 4eiy_A          105 IACFVLVLTQSSIFSLLAIAIDRYI  129 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            9999999999999999999999984

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.75  E-value=1.2e-17  Score=123.56  Aligned_cols=101  Identities=35%  Similarity=0.574  Sum_probs=90.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH--HHHHHHHHHcccccccccchhhhh
Q psy11793         23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN--MPMLVVNSFYQRVIGWETGCDIYG  100 (123)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~--~p~~~~~~~~~~~~~~~~~C~~~~  100 (123)
                      ......+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++.  +|..+.....+.|..++..|++..
T Consensus        33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~  112 (448)
T 2z73_A           33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYG  112 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHHH
Confidence            345566777888999999999999999999999999999999999999999875  787777777778989999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        101 LFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       101 ~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      ++...+..+|+++++++|+|||+
T Consensus       113 ~~~~~~~~~S~~~l~~isidRy~  135 (448)
T 2z73_A          113 FIGGIFGFMSIMTMAMISIDRYN  135 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999984

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.74  E-value=8.5e-18  Score=126.67  Aligned_cols=103  Identities=21%  Similarity=0.188  Sum_probs=94.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhh
Q psy11793         21 ETGCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIY   99 (123)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~   99 (123)
                      +.......+++.+++++|++||+++++++.+++++|++.|+++.|||++|++.++. .|..+.....+.|..++..|++.
T Consensus       179 ~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~  258 (514)
T 3sn6_R          179 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFW  258 (514)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhH
Confidence            44456667788888999999999999999999999999999999999999999988 99888888888899999999999


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHhcC
Q psy11793        100 GLFGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       100 ~~~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      .++..++..+|++++++||+|||+
T Consensus       259 ~~l~~~~~~~S~~~l~~isidRy~  282 (514)
T 3sn6_R          259 TSIDVLCVTASIETLCVIAVDRYF  282 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999984

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=96.38  E-value=0.0015  Score=30.39  Aligned_cols=15  Identities=33%  Similarity=0.510  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHhcC
Q psy11793        109 GSAMNNAVIAYDRYR  123 (123)
Q Consensus       109 ~s~~~l~~is~dRyi  123 (123)
                      +|++++++||+|||+
T Consensus         2 ~Si~~L~~is~dRy~   16 (32)
T 1hll_A            2 SSIVHLCAISLDRYW   16 (32)
T ss_dssp             HHHHHHHHHHTHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            689999999999984

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=96.06  E-value=0.0003  Score=38.72  Aligned_cols=31  Identities=10%  Similarity=0.133  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhccCCCC
Q psy11793         26 IYGLFGSISGFGSAMNNAVIAYDRYRTKSLK   56 (123)
Q Consensus        26 ~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~   56 (123)
                      +..+++.+++++|++||+++++++.++|.-+
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~~   60 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGHH   60 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEecccc
Confidence            5567788889999999999999998877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	0.003

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 42  NAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVNMPMLVVNSFYQ 87
           N +  Y   + K L+TP N  + N A+ DL M+       + +   
Sbjct: 55  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.73

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=2.8e-17  Score=115.71  Aligned_cols=101  Identities=23%  Similarity=0.307  Sum_probs=92.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCCChhHHHHHHHHHHHHHHHhH-HHHHHHHHHcccccccccchhhhhH
Q psy11793         23 GCDIYGLFGSISGFGSAMNNAVIAYDRYRTKSLKTPSNLFIFNQALLDLCMMVN-MPMLVVNSFYQRVIGWETGCDIYGL  101 (123)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~dl~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~  101 (123)
                      +..+.++++.+++++|++||+++++++.++|++|++.|+++.|||++|++.++. .|..+.....+.|..++..|+...+
T Consensus        36 ~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  115 (348)
T d1u19a_          36 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGF  115 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhhh
Confidence            355667778888999999999999999999999999999999999999999999 9988887778888889999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcC
Q psy11793        102 FGSISGFGSAMNNAVIAYDRYR  123 (123)
Q Consensus       102 ~~~~~~~~s~~~l~~is~dRyi  123 (123)
                      +...+..++.++++++++|||+
T Consensus       116 ~~~~~~~~s~~~l~~is~~R~~  137 (348)
T d1u19a_         116 FATLGGEIALWSLVVLAIERYV  137 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceeeecchhhhhhcccce
Confidence            9999999999999999999983