Psyllid ID: psy11830

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
MKMYANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYNFTRLIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADLLFLITGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHcccccccccccccccccHHHccccccccccEEEEEEccccccEEcccEEccccccccccccccccccHHHHHHcccEEEEEEEEEEEccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEHHHHHHHHHccccccccccccccccEEEEEEEccccccccccccccccccHHHHcccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccHEHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MKMYANSLLDMKIVRTglnhipqfpvsndLVMEVIFLGYNnikiiegrafngsqiSKFVskirpeqklnprpsayntyynftrlifpgNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYdwqkgygckvAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGalpmfgissysttsiclpmdtrhlgskIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADLLFLITGIssysttsiclpmdtrhlgskIYVHTLLLFSSLVFAMICVCYFQIYSSL
Flexible Loop (DISEMBL)
MKMYANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSkirpeqklnprpsAYNTYYNFTRLIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADLLFLITGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSL
Low Complexity Region (SEG)
MKMYANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYNFTRLIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADLLFLitgissysttsiCLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSL
Disordered region (IsUnstruct)
*****NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKI**********SAYNTYYNFTRLIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADLLFLITGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIY***
Disordered Region (DISOPRED)
******SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYNFTRLIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADL**************ICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSL
Disordered Region (DISEMBL)
MKMYANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYNFTRLIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADLLFLITGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSL
Disordered Region (DISPRO)
MKMYANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYNFTRLIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNV**************YSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMYANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYNFTRLIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADLLFLITGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
P30730	700	Lutropin-choriogonadotrop	yes	N/A	0.462	0.255	0.455	9e-42
P47799	694	Follicle-stimulating horm	yes	N/A	0.462	0.257	0.466	2e-41
P16582	696	Lutropin-choriogonadotrop	yes	N/A	0.462	0.257	0.455	4e-41
P35379	695	Follicle-stimulating horm	N/A	N/A	0.462	0.257	0.472	5e-41
Q5GJ04	695	Follicle-stimulating horm	N/A	N/A	0.462	0.257	0.461	5e-41
P35376	695	Follicle-stimulating horm	yes	N/A	0.462	0.257	0.466	7e-41
Q95179	687	Follicle-stimulating horm	N/A	N/A	0.462	0.260	0.461	8e-41
Q7ZTV5	693	Follicle-stimulating horm	N/A	N/A	0.462	0.258	0.466	1e-40
Q28005	701	Lutropin-choriogonadotrop	no	N/A	0.462	0.255	0.444	1e-40
O02721	676	Lutropin-choriogonadotrop	no	N/A	0.462	0.264	0.45	2e-40

>sp|P30730|LSHR_MOUSE Lutropin-choriogonadotropic hormone receptor OS=Mus musculus GN=Lhcgr PE=2 SV=1

 Score =  171 bits (433), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 122/180 (67%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  VL V L+   + +VPRFL+ +L+ AD CM  YLLL+A  D Q+   Y+N+A DWQ 
Sbjct: 380 GNLTVLFVLLTSRYKLTVPRFLMCNLSFADFCMGLYLLLIASVDSQTKGQYYNHAIDWQT 439

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
           G GC  AGF TVFAS+LS++TL +ITLERW++I  A+  + KL +      +L G+++++
Sbjct: 440 GSGCSAAGFFTVFASELSVYTLTVITLERWHTITYAVQLDQKLRLRHAIPIMLGGWIFST 499

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
           +M  LP+ G+SSY   SICLPMD     S++Y+ ++LL +++ F +IC CY +IY ++ N
Sbjct: 500 LMATLPLVGVSSYMKVSICLPMDVESTLSQVYILSILLLNAVAFVVICACYVRIYFAVQN 559

Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.
Mus musculus (taxid: 10090)

>sp|P47799|FSHR_HORSE Follicle-stimulating hormone receptor OS=Equus caballus GN=FSHR PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 118/180 (65%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  VL + ++   + +VPRFL+ +LA ADLC+  YLLL+A  D+ +   Y NYA DWQ 
Sbjct: 378 GNIIVLVILITSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDIHTKSQYHNYAIDWQT 437

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
           G GC  AGF TVFAS+LS++TL  ITLERW++I  A+    K+ +      +LVG+++A 
Sbjct: 438 GAGCDAAGFFTVFASELSVYTLTAITLERWHTITHAMQLECKVQLRHAASVMLVGWIFAF 497

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
            +  LP+FGIS+Y   SICLPMD     S++YV +LL+ + L F +IC CY  IY ++ N
Sbjct: 498 AVALLPIFGISTYMKVSICLPMDIDSPLSQLYVMSLLVLNVLAFVVICGCYIHIYLTVRN 557

Receptor for follicle-stimulating hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Among all mammalian FSH receptors, on the horse receptor does not bind LH/chorionic gonadotrophin (CG).

Equus caballus (taxid: 9796)

>sp|P16582|LSHR_PIG Lutropin-choriogonadotropic hormone receptor OS=Sus scrofa GN=LHCGR PE=2 SV=1

 Score =  169 bits (427), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 122/180 (67%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  VL V L+   + +VPRFL+ +L+ AD CM  YLLL+A  D Q+   Y+N+A DWQ 
Sbjct: 376 GNVTVLFVLLTSHYKLTVPRFLMCNLSFADFCMGLYLLLIASVDAQTKGQYYNHAIDWQT 435

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
           G GC VAGF TVFAS+LS++TL +ITLERW++I  A+  + KL +      +L G+++++
Sbjct: 436 GNGCSVAGFFTVFASELSVYTLTVITLERWHTITYAIQLDQKLRLRHAIPIMLGGWLFST 495

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
           ++  LP+ G+SSY   SICLPMD     S++Y+ T+L+ + + F +IC CY +IY ++ N
Sbjct: 496 LIAMLPLVGVSSYMKVSICLPMDVETTLSQVYILTILILNVVAFIIICACYIKIYFAVQN 555

Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Sus scrofa (taxid: 9823)

>sp|P35379|FSHR_SHEEP Follicle-stimulating hormone receptor OS=Ovis aries GN=FSHR PE=1 SV=1

 Score =  169 bits (427), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 117/180 (65%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  VL + ++   + +VPRFL+ +LA ADLC+  YLLL+A  D+ +   Y NYA DWQ 
Sbjct: 379 GNILVLVILITSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDVHTKSQYHNYAIDWQT 438

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
           G GC  AGF TVFAS+LS++TL  ITLERW++I  A+    K+ +      +LVG+V+A 
Sbjct: 439 GAGCDAAGFFTVFASELSVYTLTAITLERWHTITHAMQLECKVHVRHAASIMLVGWVFAF 498

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
            +   P+FGISSY   SICLPMD     S++YV +LL+ + L F +IC CY  IY ++ N
Sbjct: 499 AVALFPIFGISSYMKVSICLPMDIDSPLSQLYVMSLLVLNVLAFVVICGCYTHIYLTVRN 558

Receptor for follicle-stimulating hormone. The activity of isoform FSH-R1 is mediated by G proteins which activate adenylate cyclase. Isoform FSH-R2 and isoform FSH-R3 also bind FSH, but this does not result in activation of adenylate cyclase. Isoform FSH-R3 may be involved in calcium signaling.

Ovis aries (taxid: 9940)

>sp|Q5GJ04|FSHR_FELCA Follicle-stimulating hormone receptor OS=Felis catus GN=FSHR PE=2 SV=1

 Score =  168 bits (426), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 119/180 (66%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  VL + ++   + +VPRFL+ +LA ADLC+  YLLL+A  D+ +   Y NYA DWQ 
Sbjct: 379 GNIIVLMILITSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDIYTKSQYHNYAIDWQT 438

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
           G GC  AGF TVFAS+LS++TL +ITLERW++I  A+    K+ +      +L+G+++A 
Sbjct: 439 GAGCDAAGFFTVFASELSVYTLTVITLERWHTITHAMQLECKVQLRHAAIIMLLGWIFAF 498

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
           ++   P+FGISSY   SICLPMD     S++YV +LL+ + L F +IC CY  IY ++ N
Sbjct: 499 MVALFPIFGISSYMKVSICLPMDIDSPLSQLYVMSLLVLNVLAFVVICCCYAHIYLTVRN 558

Receptor for follicle-stimulating hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Felis catus (taxid: 9685)

>sp|P35376|FSHR_BOVIN Follicle-stimulating hormone receptor OS=Bos taurus GN=FSHR PE=2 SV=1

 Score =  168 bits (425), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 117/180 (65%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  VL + ++   + +VPRFL+ +LA ADLC+  YLLL+A  D+ +   Y NYA DWQ 
Sbjct: 379 GNILVLVILITSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDVHTKTEYHNYAIDWQT 438

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
           G GC  AGF TVFAS+LS++TL  ITLERW++I  A+    K+ +      +LVG+++A 
Sbjct: 439 GAGCDAAGFFTVFASELSVYTLTAITLERWHTITHAMQLECKVQLRHAASIMLVGWIFAF 498

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
            +   P+FGISSY   SICLPMD     S++YV +LL+ + L F +IC CY  IY ++ N
Sbjct: 499 AVALFPIFGISSYMKVSICLPMDIDSPLSQLYVMSLLVLNVLAFVVICGCYTHIYLTVRN 558

Receptor for follicle-stimulating hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Bos taurus (taxid: 9913)

>sp|Q95179|FSHR_EQUAS Follicle-stimulating hormone receptor OS=Equus asinus GN=FSHR PE=2 SV=1

 Score =  168 bits (425), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 83/180 (46%), Positives = 117/180 (65%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  VL + ++   + +VPRFL+ +LA ADLC+  YLLL+A  D+ +   Y NYA DWQ 
Sbjct: 371 GNIIVLVILITSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDIHTKSQYHNYAIDWQT 430

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
           G GC  AGF TVF S+LS++TL  ITLERW++I  A+    K+ +      +LVG+++  
Sbjct: 431 GAGCDAAGFFTVFGSELSVYTLTAITLERWHTITHAMQLECKVQLRHAASVMLVGWIFGF 490

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
            +G LP+FGIS+Y   SICLPMD     S++YV +LL+ + L F +IC CY  IY ++ N
Sbjct: 491 GVGLLPIFGISTYMKVSICLPMDIDSPLSQLYVMSLLVLNVLAFVVICGCYTHIYLTVRN 550

Receptor for follicle-stimulating hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Equus asinus (taxid: 9793)

>sp|Q7ZTV5|FSHR_CAIMO Follicle-stimulating hormone receptor OS=Cairina moschata GN=FSHR PE=2 SV=1

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 118/180 (65%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  VL + +S   + +VPRFL+ +LA ADLC+  YLL +A  D+Q+   Y+NYA DWQ 
Sbjct: 379 GNIVVLIILISSQYKLTVPRFLMCNLAFADLCIGIYLLFIASVDIQTKSQYYNYAIDWQT 438

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILV-GYVYAS 266
           G GC  AGF TVFAS+LS++TL +ITLERW++I  A+  ++    R    I++ G+++A 
Sbjct: 439 GAGCNAAGFFTVFASELSVYTLTVITLERWHTITYAMQLDRKVRFRHAVIIMIFGWMFAF 498

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
            +  LP+FG+SSY   SICLPMD     S+ YV  LL+ + L F +IC CY  IY ++ N
Sbjct: 499 TVALLPIFGVSSYMKVSICLPMDIETPFSQAYVIFLLVLNVLAFVIICACYICIYFTVRN 558

Receptor for follicle-stimulating hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Cairina moschata (taxid: 8855)

>sp|Q28005|LSHR_BOVIN Lutropin-choriogonadotropic hormone receptor OS=Bos taurus GN=LHCGR PE=2 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 121/180 (67%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  VL V L+   + +VPRFL+ +L+ AD CM  YLLL+A  D Q+   Y+N+A DWQ 
Sbjct: 378 GNVTVLFVLLTSRYKLTVPRFLMCNLSFADFCMGLYLLLIASVDAQTKGQYYNHAIDWQT 437

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
           G GC  AGF TVFAS+LS++TL +ITLERW++I  A+  + KL +      +L G+++++
Sbjct: 438 GSGCSAAGFFTVFASELSVYTLTVITLERWHTITYAIQLDQKLRLKHAIPVMLGGWLFST 497

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
           ++  LP+ G+S+Y   SICLPMD     S++Y+ T+L+ + + F +IC CY +IY ++ N
Sbjct: 498 LIAVLPLVGVSNYMKVSICLPMDVESTLSQVYILTILILNVMAFIIICACYIKIYFAVQN 557

Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Bos taurus (taxid: 9913)

>sp|O02721|LSHR_CALJA Lutropin-choriogonadotropic hormone receptor OS=Callithrix jacchus GN=LHCGR PE=2 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 121/180 (67%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  VL V L+   + +VPRFL+ +L+ AD CM  YLLL+A  D Q+   Y+N+A DWQ 
Sbjct: 353 GNMTVLFVLLTSRYKLTVPRFLMCNLSFADFCMGLYLLLIASVDSQTKGQYYNHAIDWQT 412

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
           G GC  AGF TVFAS+LS++TL +ITLERW++I  A++ + KL +      +L G++++S
Sbjct: 413 GSGCNTAGFFTVFASELSVYTLTVITLERWHTITYAIHLDQKLRLRHAILIMLGGWLFSS 472

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
           ++  LP+ G+S+Y   SIC PMD     S+IY+ T+L+ + + F +IC CY +IY ++ N
Sbjct: 473 LIAMLPLVGVSNYMKVSICFPMDVETTLSQIYILTILILNVVAFIIICACYIKIYFAVRN 532

Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Callithrix jacchus (taxid: 9483)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
328720344	758	PREDICTED: follicle-stimulating hormone	0.459	0.234	0.556	5e-51
157105802	860	leucine-rich transmembrane protein [Aede	0.462	0.208	0.544	3e-50
403182641	774	AAEL004399-PA, partial [Aedes aegypti]	0.462	0.231	0.544	4e-50
170043092	841	leucine-rich transmembrane protein [Cule	0.459	0.211	0.553	8e-49
347971116	959	AGAP004035-PA [Anopheles gambiae str. PE	0.459	0.185	0.541	3e-45
195396294	752	GJ11113 [Drosophila virilis] gi|19414347	0.459	0.236	0.572	2e-44
195055187	821	GH17283 [Drosophila grimshawi] gi|193892	0.459	0.216	0.561	2e-44
210076546	749	Sl LGR1 [Spodoptera littoralis]	0.457	0.236	0.471	3e-44
328708954	731	PREDICTED: lutropin-choriogonadotropic h	0.457	0.242	0.5	7e-44
194764509	656	GF23082 [Drosophila ananassae] gi|190614	0.692	0.408	0.375	2e-43

>gi|328720344|ref|XP_001945379.2| PREDICTED: follicle-stimulating hormone receptor-like [Acyrthosiphon pisum]

 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 99/178 (55%), Positives = 122/178 (68%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
            N  V+ V   +    SVPRFL+ +LA AD C A YLLLLA KDL+S+E YFNYAY WQ 
Sbjct: 455 ANLVVMTVVFRKNFNHSVPRFLMCNLAFADFCTAIYLLLLAYKDLESSEKYFNYAYSWQN 514

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASI 267
           G GCK+ GF+TVF+SQLS+F L ++T+ERWYSI+RALY NK+T   T   +  G+VY+  
Sbjct: 515 GVGCKIGGFLTVFSSQLSVFALCLLTIERWYSIRRALYTNKMTFASTVRIMAFGWVYSIA 574

Query: 268 MGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLG 325
           M  +P+ GISSYSTTSICLPMDT       YV TLL F +  F ++  CY QIY SL 
Sbjct: 575 MATMPLLGISSYSTTSICLPMDTARASGMCYVFTLLTFGAAAFVLMLFCYVQIYMSLS 632

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105802|ref|XP_001649032.1| leucine-rich transmembrane protein [Aedes aegypti]

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 130/180 (72%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN AVL V  S  ++ +VP+FLI HLA ADLCM  YLLL+A  D  S   YFN+A+DWQ 
Sbjct: 491 GNVAVLVVLFSNRTDLTVPKFLICHLAFADLCMGLYLLLIASIDAHSMGEYFNFAFDWQY 550

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYAS 266
           G+GCKVAGF+TVFAS LSIFTL ++TLERW++I  A+Y NK + +   TY ++ G++Y++
Sbjct: 551 GFGCKVAGFLTVFASHLSIFTLTIVTLERWFAITHAIYLNKRIKLSAATYIMIAGWIYSA 610

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
           +M A P+FGIS+YS+TSICLPM+ R      Y+ T+L  + L F +I +CY QIY SLG 
Sbjct: 611 VMAAFPLFGISNYSSTSICLPMEARDTWDIAYLLTVLGINGLAFIIIVICYAQIYFSLGK 670

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403182641|gb|EAT44221.2| AAEL004399-PA, partial [Aedes aegypti]

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/180 (54%), Positives = 130/180 (72%), Gaps = 1/180 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN AVL V  S  ++ +VP+FLI HLA ADLCM  YLLL+A  D  S   YFN+A+DWQ 
Sbjct: 494 GNVAVLVVLFSNRTDLTVPKFLICHLAFADLCMGLYLLLIASIDAHSMGEYFNFAFDWQY 553

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYAS 266
           G+GCKVAGF+TVFAS LSIFTL ++TLERW++I  A+Y NK + +   TY ++ G++Y++
Sbjct: 554 GFGCKVAGFLTVFASHLSIFTLTIVTLERWFAITHAIYLNKRIKLSAATYIMIAGWIYSA 613

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
           +M A P+FGIS+YS+TSICLPM+ R      Y+ T+L  + L F +I +CY QIY SLG 
Sbjct: 614 VMAAFPLFGISNYSSTSICLPMEARDTWDIAYLLTVLGINGLAFIIIVICYAQIYFSLGK 673

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043092|ref|XP_001849235.1| leucine-rich transmembrane protein [Culex quinquefasciatus] gi|167866512|gb|EDS29895.1| leucine-rich transmembrane protein [Culex quinquefasciatus]

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN AVL V  S  ++ SVP+FLI HLA ADLCM  YLLL+A  D  S   YFN+A+DWQ 
Sbjct: 480 GNVAVLVVLFSNRTDMSVPKFLICHLAFADLCMGLYLLLIASIDAHSMGEYFNFAFDWQY 539

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYAS 266
           G GCKVAGF+TVFAS LSIFTL ++TLERW++I  A+Y NK + +   TY ++ G++Y+ 
Sbjct: 540 GSGCKVAGFLTVFASHLSIFTLTIVTLERWFAITHAIYLNKRIKLSAATYIMIAGWIYSI 599

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLG 325
           +M ALP+ GIS+YS+TSICLPM+ R      Y+ T+L  + L F +I +CY QIY SLG
Sbjct: 600 VMAALPLVGISNYSSTSICLPMEARDSWDISYLLTVLGINGLAFVIIVICYAQIYLSLG 658

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347971116|ref|XP_309589.2| AGAP004035-PA [Anopheles gambiae str. PEST] gi|333466596|gb|EAA05376.3| AGAP004035-PA [Anopheles gambiae str. PEST]

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 128/179 (71%), Gaps = 1/179 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN AV+ V  S  S+ +VP+FLI +LA ADLCM  YLLL+A  D  S   YFNYA+DWQ 
Sbjct: 585 GNVAVVVVLFSNRSDLTVPKFLICNLAFADLCMGLYLLLIASIDAHSMGEYFNYAFDWQY 644

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
           G GCKVAGF+TVFAS LSIFTL ++TLERW++I  A+Y N ++ +    Y +++G+VYA 
Sbjct: 645 GVGCKVAGFLTVFASHLSIFTLTIVTLERWFAITHAIYLNRRIKLSAAMYIMIIGWVYAI 704

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLG 325
            M ++P+FGIS+YS+TSICLPM+ R      Y+ T+L+ +   F +I VCY QIY SLG
Sbjct: 705 TMASMPLFGISNYSSTSICLPMEARDSLDIAYLLTVLVVNGCGFVVIVVCYAQIYLSLG 763

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195396294|ref|XP_002056767.1| GJ11113 [Drosophila virilis] gi|194143476|gb|EDW59879.1| GJ11113 [Drosophila virilis]

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/180 (57%), Positives = 132/180 (73%), Gaps = 2/180 (1%)

Query: 148 GNAAVLAVTLSRTSEK-SVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
           GN AVL VTLS  SE  SVPRFLI HLA ADLC+  YLLL+A  D  S   YFNYA+DWQ
Sbjct: 426 GNLAVLTVTLSIKSESPSVPRFLICHLAFADLCLGLYLLLIASIDAHSMGEYFNYAFDWQ 485

Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYA 265
            G GCK+AGF+TVFAS LSIFTL +IT+ERW++I  A+Y NK +T+ +    +L G++Y+
Sbjct: 486 YGLGCKIAGFLTVFASHLSIFTLTIITIERWFAITHAMYLNKRITLRQAAGIMLTGWIYS 545

Query: 266 SIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLG 325
            IM +LP+FGIS+YS+TSICLPM+ R +   IY+  +L  + + F +I +CY QIY SLG
Sbjct: 546 IIMSSLPLFGISNYSSTSICLPMEIRDIYDSIYLILILGCNFVAFTIIAICYSQIYLSLG 605

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055187|ref|XP_001994501.1| GH17283 [Drosophila grimshawi] gi|193892264|gb|EDV91130.1| GH17283 [Drosophila grimshawi]

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 131/180 (72%), Gaps = 2/180 (1%)

Query: 148 GNAAVLAVTLSRTSE-KSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
           GN AVL V LS  SE  SVPRFLI HLA ADLC+  YLLL+A  D  S   YFNYAYDWQ
Sbjct: 495 GNVAVLTVILSIKSESPSVPRFLICHLAFADLCLGLYLLLIASIDAHSMGQYFNYAYDWQ 554

Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYA 265
            G+GCKVAGF+TVFAS LS+FTL +IT+ERW++I  A+Y NK + + R +  ++ G++YA
Sbjct: 555 YGFGCKVAGFLTVFASHLSVFTLTVITIERWFAITHAMYLNKRIKLGRASVIMITGWLYA 614

Query: 266 SIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLG 325
             M +LP+FGIS+YS+TSICLPM+ R +   +Y+  +L  + + F +I +CY QIY SLG
Sbjct: 615 ITMSSLPLFGISNYSSTSICLPMEQRDIYDSVYLLMILGSNFIAFTIIAICYSQIYLSLG 674

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|210076546|gb|ACJ06652.1| Sl LGR1 [Spodoptera littoralis]

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/178 (47%), Positives = 127/178 (71%), Gaps = 1/178 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN AVL V L+  +E +VPRFL+ HLA +DLC   YL +LA+ DL+S   +FNYAYDWQ 
Sbjct: 425 GNVAVLLVLLTNHTEITVPRFLMCHLAFSDLCTGLYLFMLAVVDLRSYGEFFNYAYDWQY 484

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALY-ANKLTIHRTTYFILVGYVYAS 266
           G GCK+AGF++VF+ QLS+ TL ++TLERW++I  A+Y   ++++      ++ G++Y+ 
Sbjct: 485 GVGCKIAGFLSVFSGQLSVITLTIVTLERWFAITYAIYLERRISLSAAAKIMMGGWLYSF 544

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSL 324
           +M  LP+ G+S YS+TSICLP++++ +G  +Y  ++ + S+L +  I VCY QIY SL
Sbjct: 545 LMAGLPLVGVSDYSSTSICLPVESKDVGDAVYQGSIFIVSALAWVTIVVCYVQIYRSL 602

Source: Spodoptera littoralis

Species: Spodoptera littoralis

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708954|ref|XP_003243835.1| PREDICTED: lutropin-choriogonadotropic hormone receptor-like [Acyrthosiphon pisum]

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 125/178 (70%), Gaps = 1/178 (0%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN AVL V LS     +VP+FL+ +LAMAD CM  YLLL+A+ D +S   YFN+A  WQ+
Sbjct: 313 GNMAVLFVLLSSRFRLTVPKFLMCNLAMADFCMGLYLLLIAVMDARSIGQYFNHAIFWQR 372

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
           G GC+VAGF+TVF+  LS+FTL +IT ERWY+I  A++ N +L +  +   + VG++++ 
Sbjct: 373 GIGCQVAGFLTVFSCMLSVFTLMIITGERWYTITYAIHLNRRLKLGASVNIMAVGWLFSV 432

Query: 267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSL 324
           +MGALP+ G S YS TSICLPMD      K+Y+ +LL F+ + F +IC CY ++YSS+
Sbjct: 433 VMGALPLMGTSGYSKTSICLPMDNSSFADKVYLFSLLTFNGIAFVVICACYAKMYSSI 490

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194764509|ref|XP_001964371.1| GF23082 [Drosophila ananassae] gi|190614643|gb|EDV30167.1| GF23082 [Drosophila ananassae]

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 168/301 (55%), Gaps = 33/301 (10%)

Query: 35  IFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNTYYNFTRL------IFP 87
           + L  N+I  ++  AF GS+I+K    ++  +KL     +A++   + T           
Sbjct: 236 LILANNDISYVDDSAFFGSKIAKL--SLKENRKLKELHTNAFHGIIDITEFQQDDLGTLG 293

Query: 88  GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVK--DLQSTEVYFNYAYDW 145
           G+ A+ A  LS       P   + ++A A + + ++   + +   D Q  E   N+ +  
Sbjct: 294 GSEALSADVLS------TPFSSVDYMADAAMNLGYFHEEITINPDDEQFAEFCGNFTF-- 345

Query: 146 QKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDW 205
                        R     V RFL+ HLA ADLC+  YL L+A  D  S   YFNYAYDW
Sbjct: 346 -------------RPEITPVARFLMCHLAFADLCLGLYLFLVASIDAHSMGEYFNYAYDW 392

Query: 206 QKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILV-GYVY 264
           Q G GCKVAGF+TVFAS LS+FTL +IT+ERW +I +A+Y NK    R+   I++ G++Y
Sbjct: 393 QYGLGCKVAGFLTVFASHLSVFTLTLITIERWVAITQAMYLNKRIRLRSASIIMLGGWIY 452

Query: 265 ASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSL 324
           + +M +LP+FGIS+YS+TSICLPM+ R     +Y+  +L  + + F +I VCY +IY SL
Sbjct: 453 SMVMSSLPLFGISNYSSTSICLPMEVRDTFDTVYLIGILGCNGVAFFIIAVCYAKIYFSL 512

Query: 325 G 325
           G
Sbjct: 513 G 513

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
FB|FBgn0016650	831	Lgr1 [Drosophila melanogaster	0.459	0.214	0.533	1.6e-49
ZFIN|ZDB-GENE-020423-5	668	fshr "follicle stimulating hor	0.462	0.267	0.477	4.3e-46
UNIPROTKB|I3L9Z2	620	FSHR "Follicle-stimulating hor	0.462	0.288	0.466	2.4e-44
UNIPROTKB|F1MT42	695	FSHR "Follicle-stimulating hor	0.462	0.257	0.466	1.6e-43
UNIPROTKB|P49059	695	FSHR "Follicle-stimulating hor	0.462	0.257	0.466	2e-43
UNIPROTKB|P35376	695	FSHR "Follicle-stimulating hor	0.462	0.257	0.466	2e-43
ZFIN|ZDB-GENE-110524-4	757	tshr "thyroid stimulating horm	0.462	0.236	0.483	4.1e-43
MGI|MGI:96783	700	Lhcgr "luteinizing hormone/cho	0.472	0.261	0.459	4.4e-43
UNIPROTKB|E9PDH1	637	LHCGR "Lutropin-choriogonadotr	0.462	0.281	0.444	5.4e-43
UNIPROTKB|F6XXE7	689	FSHR "Uncharacterized protein"	0.462	0.259	0.461	6.6e-43

FB|FBgn0016650 Lgr1 [Drosophila melanogaster (taxid:7227)]

 Score = 491 (177.9 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 96/180 (53%), Positives = 127/180 (70%)

Query:   148 GNAAVLAVTLS-RTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
             GN AVL V LS R     VPRFL+ HLA ADLC+  YLLL+A  D  S   YFN+AYDWQ
Sbjct:   505 GNVAVLTVILSIRPESTPVPRFLMCHLAFADLCLGLYLLLVACFDAHSMGEYFNFAYDWQ 564

Query:   207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYA 265
              G GCKVAGF+TVFAS LS+FTL +IT+ERW +I +A+Y N ++ +      +  G++Y+
Sbjct:   565 YGLGCKVAGFLTVFASHLSVFTLTVITIERWLAITQAMYLNHRIKLRPAALIMRGGWIYS 624

Query:   266 SIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLG 325
              +M +LP+FGIS+YS+TSICLPM+ R +   IY+  +L  + + F++I VCY QIY SLG
Sbjct:   625 MLMSSLPLFGISNYSSTSICLPMENRDVYDTIYLIAILGSNGVAFSIIAVCYAQIYLSLG 684

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0016500 "protein-hormone receptor activity" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

ZFIN|ZDB-GENE-020423-5 fshr "follicle stimulating hormone receptor" [Danio rerio (taxid:7955)]

 Score = 444 (161.4 bits), Expect = 4.3e-46, Sum P(2) = 4.3e-46
 Identities = 86/180 (47%), Positives = 118/180 (65%)

Query:   148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
             GN  VL V L+   + +VPRFL+ HLA ADLCM  YLLL+A  D+ +   Y+NY  DWQ 
Sbjct:   360 GNTVVLLVLLTSRYKLTVPRFLMCHLAFADLCMGIYLLLIAAVDIHTQSRYYNYGIDWQT 419

Query:   208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYAS 266
             G GC VAGF TVF+S+LS++TL  ITLERW++I  A+   + + +      +  G++++ 
Sbjct:   420 GAGCHVAGFFTVFSSELSVYTLTAITLERWHTITYAMQLERQMRLRHACLVMATGWLFSL 479

Query:   267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
             +    PMFG+SSYS TSICLPMD   L S+ YV  LLL ++  F ++CVCY  IY ++ N
Sbjct:   480 LTALTPMFGVSSYSKTSICLPMDVETLLSQGYVVLLLLLNAAAFLVVCVCYTLIYLTVRN 539

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016500 "protein-hormone receptor activity" evidence=IEA

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|I3L9Z2 FSHR "Follicle-stimulating hormone receptor" [Sus scrofa (taxid:9823)]

 Score = 428 (155.7 bits), Expect = 2.4e-44, Sum P(2) = 2.4e-44
 Identities = 84/180 (46%), Positives = 117/180 (65%)

Query:   148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
             GN  VL + ++   + +VPRFL+ +LA ADLC+  YLLL+A  D+ +   Y NYA DWQ 
Sbjct:   304 GNIIVLVILITSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDIHTKTQYHNYAIDWQT 363

Query:   208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
             G GC  AGF TVFAS+LS++TL  ITLERW++I  A+    K+ +      +LVG+++A 
Sbjct:   364 GAGCDAAGFFTVFASELSVYTLTAITLERWHTITHAMQLQCKVQLRHAASIMLVGWIFAF 423

Query:   267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
              +   P+FGISSY   SICLPMD     S++YV +LL+ + L F +IC CY  IY ++ N
Sbjct:   424 TVALFPIFGISSYMKVSICLPMDIDSPLSQLYVVSLLVLNVLAFVVICGCYTHIYLTVRN 483

GO:0035093 "spermatogenesis, exchange of chromosomal proteins" evidence=IEA

GO:0033044 "regulation of chromosome organization" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA

UNIPROTKB|F1MT42 FSHR "Follicle-stimulating hormone receptor" [Bos taurus (taxid:9913)]

 Score = 429 (156.1 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 84/180 (46%), Positives = 117/180 (65%)

Query:   148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
             GN  VL + ++   + +VPRFL+ +LA ADLC+  YLLL+A  D+ +   Y NYA DWQ 
Sbjct:   379 GNILVLVILITSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDVHTKSQYHNYAIDWQT 438

Query:   208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
             G GC  AGF TVFAS+LS++TL  ITLERW++I  A+    K+ +      +LVG+++A 
Sbjct:   439 GAGCDAAGFFTVFASELSVYTLTAITLERWHTITHAMQLECKVQLRHAASIMLVGWIFAF 498

Query:   267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
              +   P+FGISSY   SICLPMD     S++YV +LL+ + L F +IC CY  IY ++ N
Sbjct:   499 AVALFPIFGISSYMKVSICLPMDIDSPLSQLYVMSLLVLNVLAFVVICGCYTHIYLTVRN 558

GO:0035093 "spermatogenesis, exchange of chromosomal proteins" evidence=IEA

GO:0033044 "regulation of chromosome organization" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA

UNIPROTKB|P49059 FSHR "Follicle-stimulating hormone receptor" [Sus scrofa (taxid:9823)]

 Score = 428 (155.7 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 84/180 (46%), Positives = 117/180 (65%)

Query:   148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
             GN  VL + ++   + +VPRFL+ +LA ADLC+  YLLL+A  D+ +   Y NYA DWQ 
Sbjct:   379 GNIIVLVILITSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDIHTKTQYHNYAIDWQT 438

Query:   208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
             G GC  AGF TVFAS+LS++TL  ITLERW++I  A+    K+ +      +LVG+++A 
Sbjct:   439 GAGCDAAGFFTVFASELSVYTLTAITLERWHTITHAMQLQCKVQLRHAASIMLVGWIFAF 498

Query:   267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
              +   P+FGISSY   SICLPMD     S++YV +LL+ + L F +IC CY  IY ++ N
Sbjct:   499 TVALFPIFGISSYMKVSICLPMDIDSPLSQLYVVSLLVLNVLAFVVICGCYTHIYLTVRN 558

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA

UNIPROTKB|P35376 FSHR "Follicle-stimulating hormone receptor" [Bos taurus (taxid:9913)]

 Score = 428 (155.7 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 84/180 (46%), Positives = 117/180 (65%)

Query:   148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
             GN  VL + ++   + +VPRFL+ +LA ADLC+  YLLL+A  D+ +   Y NYA DWQ 
Sbjct:   379 GNILVLVILITSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDVHTKTEYHNYAIDWQT 438

Query:   208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
             G GC  AGF TVFAS+LS++TL  ITLERW++I  A+    K+ +      +LVG+++A 
Sbjct:   439 GAGCDAAGFFTVFASELSVYTLTAITLERWHTITHAMQLECKVQLRHAASIMLVGWIFAF 498

Query:   267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
              +   P+FGISSY   SICLPMD     S++YV +LL+ + L F +IC CY  IY ++ N
Sbjct:   499 AVALFPIFGISSYMKVSICLPMDIDSPLSQLYVMSLLVLNVLAFVVICGCYTHIYLTVRN 558

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA

ZFIN|ZDB-GENE-110524-4 tshr "thyroid stimulating hormone receptor" [Danio rerio (taxid:7955)]

 Score = 461 (167.3 bits), Expect = 4.1e-43, P = 4.1e-43
 Identities = 87/180 (48%), Positives = 125/180 (69%)

Query:   148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
             GN  VL V L+   + SV RFL+ HLA+ADLCM  YLLL+A  DL +   Y+N+A DWQ 
Sbjct:   430 GNLLVLLVLLTSHYKLSVSRFLMCHLAVADLCMGIYLLLIASVDLHTQSEYYNHAIDWQT 489

Query:   208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
             G GC +AGF +VFAS+LS++TL  ITLERWY+I  A+  + KL +   +  +L+G+++  
Sbjct:   490 GPGCSLAGFFSVFASELSVYTLTTITLERWYAITYAMRLDRKLRLSHASVIMLIGWIFCL 549

Query:   267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
             ++G +P+ G+SSY   SICLPMDT+ L  +IY+  +L+ + L F +ICVCY +IY ++ N
Sbjct:   550 LLGLMPLVGVSSYQKVSICLPMDTQTLVDQIYIICVLVLNILAFIVICVCYIKIYCAVHN 609

GO:0016500 "protein-hormone receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004996 "thyroid-stimulating hormone receptor activity" evidence=IDA

MGI|MGI:96783 Lhcgr "luteinizing hormone/choriogonadotropin receptor" [Mus musculus (taxid:10090)]

 Score = 439 (159.6 bits), Expect = 4.4e-43, Sum P(2) = 4.4e-43
 Identities = 85/185 (45%), Positives = 125/185 (67%)

Query:   148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
             GN  VL V L+   + +VPRFL+ +L+ AD CM  YLLL+A  D Q+   Y+N+A DWQ 
Sbjct:   380 GNLTVLFVLLTSRYKLTVPRFLMCNLSFADFCMGLYLLLIASVDSQTKGQYYNHAIDWQT 439

Query:   208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
             G GC  AGF TVFAS+LS++TL +ITLERW++I  A+  + KL +      +L G+++++
Sbjct:   440 GSGCSAAGFFTVFASELSVYTLTVITLERWHTITYAVQLDQKLRLRHAIPIMLGGWIFST 499

Query:   267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
             +M  LP+ G+SSY   SICLPMD     S++Y+ ++LL +++ F +IC CY +IY ++ N
Sbjct:   500 LMATLPLVGVSSYMKVSICLPMDVESTLSQVYILSILLLNAVAFVVICACYVRIYFAVQN 559

Query:   327 V-LTA 330
               LTA
Sbjct:   560 PELTA 564

GO:0001541 "ovarian follicle development" evidence=IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004964 "luteinizing hormone receptor activity" evidence=TAS

GO:0005615 "extracellular space" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005764 "lysosome" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISO;IDA

GO:0006622 "protein targeting to lysosome" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007190 "activation of adenylate cyclase activity" evidence=ISO;IDA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=ISO;IDA

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008528 "G-protein coupled peptide receptor activity" evidence=ISO

GO:0008584 "male gonad development" evidence=IMP

GO:0008585 "female gonad development" evidence=IMP

GO:0009755 "hormone-mediated signaling pathway" evidence=ISO

GO:0010524 "positive regulation of calcium ion transport into cytosol" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016500 "protein-hormone receptor activity" evidence=IEA

GO:0017046 "peptide hormone binding" evidence=ISO

GO:0022602 "ovulation cycle process" evidence=IMP

GO:0031233 "intrinsic to external side of plasma membrane" evidence=ISO

GO:0032962 "positive regulation of inositol trisphosphate biosynthetic process" evidence=IDA

GO:0035472 "choriogonadotropin hormone receptor activity" evidence=IDA;IMP

GO:0038106 "choriogonadotropin hormone binding" evidence=IDA

GO:0042700 "luteinizing hormone signaling pathway" evidence=ISO;TAS

GO:0042802 "identical protein binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043235 "receptor complex" evidence=ISO

GO:0043950 "positive regulation of cAMP-mediated signaling" evidence=IDA

GO:0046544 "development of secondary male sexual characteristics" evidence=IMP

GO:0046886 "positive regulation of hormone biosynthetic process" evidence=ISO

GO:0050482 "arachidonic acid secretion" evidence=ISO

GO:0050850 "positive regulation of calcium-mediated signaling" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

GO:0051281 "positive regulation of release of sequestered calcium ion into cytosol" evidence=ISO

GO:0060065 "uterus development" evidence=IMP

GO:0071371 "cellular response to gonadotropin stimulus" evidence=IDA

GO:0072520 "seminiferous tubule development" evidence=IMP

GO:0090030 "regulation of steroid hormone biosynthetic process" evidence=IMP

UNIPROTKB|E9PDH1 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Homo sapiens (taxid:9606)]

 Score = 429 (156.1 bits), Expect = 5.4e-43, Sum P(2) = 5.4e-43
 Identities = 80/180 (44%), Positives = 121/180 (67%)

Query:   148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
             GN  VL V L+   + +VPRFL+ +L+ AD CM  YLLL+A  D Q+   Y+N+A DWQ 
Sbjct:   314 GNMTVLFVLLTSRYKLTVPRFLMCNLSFADFCMGLYLLLIASVDSQTKGQYYNHAIDWQT 373

Query:   208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
             G GC  AGF TVFAS+LS++TL +ITLERW++I  A++ + KL +      +L G++++S
Sbjct:   374 GSGCSTAGFFTVFASELSVYTLTVITLERWHTITYAIHLDQKLRLRHAILIMLGGWLFSS 433

Query:   267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
             ++  LP+ G+S+Y   SIC PMD     S++Y+ T+L+ + + F +IC CY +IY ++ N
Sbjct:   434 LIAMLPLVGVSNYMKVSICFPMDVETTLSQVYILTILILNVVAFFIICACYIKIYFAVRN 493

GO:0004964 "luteinizing hormone receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F6XXE7 FSHR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 425 (154.7 bits), Expect = 6.6e-43, Sum P(2) = 6.6e-43
 Identities = 83/180 (46%), Positives = 117/180 (65%)

Query:   148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
             GN  VL + ++   + +VPRFL+ +LA ADLC+  YLLL+A  D+ +   Y NYA DWQ 
Sbjct:   379 GNIIVLVILITSQYKLTVPRFLMCNLAFADLCIGIYLLLIASVDIYTKSQYHNYAIDWQT 438

Query:   208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN-KLTIHRTTYFILVGYVYAS 266
             G GC  AGF TVFAS+LS++TL  ITLERW++I  A+    K+ +      +L+G+++A 
Sbjct:   439 GAGCDAAGFFTVFASELSVYTLTAITLERWHTITHAMQLECKVQLRHAAGVMLLGWIFAF 498

Query:   267 IMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGN 326
              +   P+FGISSY   SICLPMD     S++YV +LL+ + L F +IC CY  IY ++ N
Sbjct:   499 AVALFPIFGISSYMKVSICLPMDIDSPVSQLYVMSLLVLNVLAFVVICGCYAHIYLTVRN 558

GO:0016021 "integral to membrane" evidence=IEA

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	387
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	5e-17

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 44/182 (24%), Positives = 68/182 (37%), Gaps = 15/182 (8%)

Query: 154 AVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGY-GCK 212
            V L     ++     + +LA+ADL     L   A+        Y+    DW  G   CK
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWAL--------YYLVGGDWPFGDALCK 52

Query: 213 VAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYASIMGAL 271
           + GF+ V     SI  L  I+++R+ +I   L Y    T  R    ILV +V A ++   
Sbjct: 53  LVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLP 112

Query: 272 PMFGI----SSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-FAMICVCYFQIYSSLGN 326
           P+             + CL         + Y     L   ++   +I VCY  I  +L  
Sbjct: 113 PLLFSWLRTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRK 172

Query: 327 VL 328
             
Sbjct: 173 RA 174

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
KOG2087|consensus	363		100.0
KOG4219|consensus	423		99.97
PHA03234	338	DNA packaging protein UL33; Provisional	99.96
PHA02834	323	chemokine receptor-like protein; Provisional	99.94
PHA03235	409	DNA packaging protein UL33; Provisional	99.93
KOG4220|consensus	503		99.93
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.92
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.9
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.89
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.37
KOG2087|consensus	363		99.29
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	98.99
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.62
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	98.55
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	98.45
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.21
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	98.17
KOG4237|consensus	498		98.11
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	97.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.76
KOG4194|consensus	873		97.44
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	97.38
KOG4237|consensus	498		97.35
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	97.34
KOG4194|consensus	873		97.14
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	96.83
KOG4219|consensus	423		96.73
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.44
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.23
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	96.11
smart00370	26	LRR Leucine-rich repeats, outliers.	96.03
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.03
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	95.69
KOG0444|consensus	1255		95.61
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	95.11
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	94.88
KOG0472|consensus	565		94.68
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	94.61
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	94.41
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	94.38
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.29
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.83
smart00370	26	LRR Leucine-rich repeats, outliers.	93.83
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.7
KOG0444|consensus	1255		93.43
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	93.22
KOG0618|consensus	1081		93.12
KOG1644|consensus	233		93.04
PF03383	153	Serpentine_r_xa: Caenorhabditis serpentine recepto	92.99
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	92.68
PLN03150	623	hypothetical protein; Provisional	92.57
PF10322	307	7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept	92.42
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.4
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	91.3
KOG0617|consensus	264		91.29
KOG4579|consensus	177		91.01
KOG4579|consensus	177		90.95
KOG4193|consensus	610		90.78
KOG1259|consensus	490		90.51
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.5
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	90.21
PLN03150	623	hypothetical protein; Provisional	90.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	89.91
KOG1259|consensus	490		89.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	89.12
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	88.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	88.49
PHA03234	338	DNA packaging protein UL33; Provisional	88.14
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	87.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	87.59
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	85.55
KOG0472|consensus	565		85.49
KOG0531|consensus	414		84.7
KOG4220|consensus	503		83.01
PHA02638	417	CC chemokine receptor-like protein; Provisional	82.38
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.06

>KOG2087|consensus

Probab=100.00  E-value=8.5e-33  Score=255.37  Aligned_cols=207  Identities=40%  Similarity=0.668  Sum_probs=191.4

Q ss_pred             CCCccccCCCCCCCchhhhH-----H--------hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhh
Q psy11830         63 RPEQKLNPRPSAYNTYYNFT-----R--------LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAV  129 (387)
Q Consensus        63 ~~~~~~~p~~~~~~~~~~~l-----~--------~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~  129 (387)
                      ..+..|.|+||+|+||++.+     |        +|+.||.+|+..+..++.++++++|+|+|||+||++||+|+.+++.
T Consensus         3 ~~~~~C~P~~da~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~   82 (363)
T KOG2087|consen    3 PHVITCKPSPDAFNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIAS   82 (363)
T ss_pred             CccceecCCCCCCCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHH
Confidence            35678999999999998754     4        3799999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccCc
Q psy11830        130 KDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGY  209 (387)
Q Consensus       130 ~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~  209 (387)
                      +|..++|+|.+|+++|+-|                                                            .
T Consensus        83 vD~~~~gey~~~ai~W~tg------------------------------------------------------------~  102 (363)
T KOG2087|consen   83 VDAKTRGEYYKHAIDWQTG------------------------------------------------------------L  102 (363)
T ss_pred             hhHHHHHHHHHHHHhhhhc------------------------------------------------------------C
Confidence            9999999999999999977                                                            4


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheecccCCceeeecc
Q psy11830        210 GCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPM  288 (387)
Q Consensus       210 ~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~~~~C~~~  288 (387)
                      .|++.||+..+++..|+++|+.+++||+++|++|++..+ ...|....+....|+.+++.+..|+++.+.|...+.|.|.
T Consensus       103 gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~~~vClPL  182 (363)
T KOG2087|consen  103 GCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGASSVCLPL  182 (363)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCcccceeeec
Confidence            899999999999999999999999999999999999988 6666699999999999999999999999999999999999


Q ss_pred             CcCcccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830        289 DTRHLGSK-IYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLT  329 (387)
Q Consensus       289 ~~~~~~~~-~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~  329 (387)
                      ..++.... +|...+..+..+.+++|.++|++|+..+++...
T Consensus       183 ~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~  224 (363)
T KOG2087|consen  183 HIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDL  224 (363)
T ss_pred             ccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCC
Confidence            88887777 687888888899999999999999999988665

>KOG4219|consensus

Probab=99.97  E-value=2.4e-31  Score=248.13  Aligned_cols=226  Identities=22%  Similarity=0.323  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830        117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE  196 (387)
Q Consensus       117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~  196 (387)
                      ..+.++...++.++++              .||++|++++..+|++|+.+|+|++|||+||++++++..+....-..   
T Consensus        35 ~~~wai~yg~l~~vAv--------------~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal---   97 (423)
T KOG4219|consen   35 QALWAIAYGLLVFVAV--------------VGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYAL---   97 (423)
T ss_pred             HHHHHHHHHHHHHHHH--------------hcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH---
Confidence            3445555555555555              99999999999999999999999999999999999999888764433   


Q ss_pred             eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830        197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFG  275 (387)
Q Consensus       197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~  275 (387)
                           .++|.+| ..|++..|+...+..+|+++|++||+|||.||.||++.+ .++|++++.++++|++|++++ .|...
T Consensus        98 -----~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r-~s~r~sk~iIllIW~lA~l~a-~P~~l  170 (423)
T KOG4219|consen   98 -----HQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR-PSRRSSKIIILLIWALALLLA-LPQLL  170 (423)
T ss_pred             -----HhccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC-CCCcceeehhHHHHHHHHHHh-cccee
Confidence                 2489999 899999999999999999999999999999999999988 799999999999999999999 56554


Q ss_pred             eccc----C----CceeeeccCcCc-----ccch----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeeeeee
Q psy11830        276 ISSY----S----TTSICLPMDTRH-----LGSK----IYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADLLFLITG  338 (387)
Q Consensus       276 ~~~~----~----~~~~C~~~~~~~-----~~~~----~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~  338 (387)
                      ..+.    .    ....|.-.+++.     ....    +..+.+++.+++|++++..+|..|.+.+|+.+..+..     
T Consensus       171 ~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~-----  245 (423)
T KOG4219|consen  171 YSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQ-----  245 (423)
T ss_pred             eeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccch-----
Confidence            3321    1    134554332222     1111    3344566778999999999999999999987652221     


Q ss_pred             eeeeccCCccccCCccccceeEEEEEeeeehhhhhhhhheeeeecc
Q psy11830        339 ISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIY  384 (387)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~f~~f~~cylpi~  384 (387)
                                ..++.+...+++++++++   ..+.+.|++||+|..
T Consensus       246 ----------~d~~~~~~kak~K~vkml---iiVV~~FaicWlPyh  278 (423)
T KOG4219|consen  246 ----------QDRKHEQLKAKKKVVKML---IIVVVIFAICWLPYH  278 (423)
T ss_pred             ----------hchhhHHHHHHHHHHHHH---HHHHHHHHHhccChh
Confidence                      112222222334444444   344577889999973

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.96  E-value=7.4e-29  Score=238.20  Aligned_cols=170  Identities=11%  Similarity=0.158  Sum_probs=127.4

Q ss_pred             hcccceeeee--eeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHH
Q psy11830        147 KGNAAVLAVT--LSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQ  223 (387)
Q Consensus       147 ~gN~lvi~vi--~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~  223 (387)
                      +||++|++++  .+++++|+++|+|+.|||+||+++++..+|.....          ...|++| ..||+.+++...+.+
T Consensus        48 ~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~----------~~~w~fG~~lCk~~~~~~~~~~~  117 (338)
T PHA03234         48 PMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNR----------EALFNFNQAFCQCVLFIYHASCS  117 (338)
T ss_pred             hhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCccCchhHHHHHHHHHHHHHH
Confidence            9999999954  45667799999999999999999998777765421          2369999 999999999999999


Q ss_pred             HHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhheeccc--C-CceeeeccCcCcccchhhhH
Q psy11830        224 LSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSY--S-TTSICLPMDTRHLGSKIYVH  300 (387)
Q Consensus       224 ~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~--~-~~~~C~~~~~~~~~~~~~~~  300 (387)
                      +|+++|++||+|||+||+||.+++. ++++....++++|+.+++.++|++......  + ....|...++.+.....+..
T Consensus       118 ~Si~~L~~ISiDRY~aIv~p~~~~~-~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~  196 (338)
T PHA03234        118 YSICMLAIIATIRYKTLHRRKKNDK-KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKKAYDLFIA  196 (338)
T ss_pred             HHHHHHHHHHHHhHeeeechhhhhh-hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcchhhHHHHH
Confidence            9999999999999999999988653 334444556667999999886665543222  2 22468765543222122211


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11830        301 ----TLLLFSSLVFAMICVCYFQIYSSLGNV  327 (387)
Q Consensus       301 ----~~~~~~~iPl~ii~~~Y~~I~~~lr~~  327 (387)
                          ..++.+++|+++|++||.+|.++++++
T Consensus       197 ~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~  227 (338)
T PHA03234        197 IKIVFCFIWGIFPTMIFSFFYVIFCKALHAL  227 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                122345899999999999999998763

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.94  E-value=2.8e-26  Score=219.70  Aligned_cols=186  Identities=19%  Similarity=0.273  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830        118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV  197 (387)
Q Consensus       118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~  197 (387)
                      ....+...++.+.|+              +||+++++++.+++++ ++.|+++.|||+||++. ....|..+...     
T Consensus        29 ~~~~~~~~li~v~~~--------------~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~-----   87 (323)
T PHA02834         29 YFVIVFYILLFIFGL--------------IGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND-----   87 (323)
T ss_pred             hhHHHHHHHHHHHHH--------------hhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHH-----
Confidence            445555666666776              9999999988776554 57899999999999986 44566554221     


Q ss_pred             eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhee
Q psy11830        198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGI  276 (387)
Q Consensus       198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~  276 (387)
                          .++|.+| ..|++.+++...+..+|++++++||+|||.+|++|+++++.+.+++...++++|+.+++.++||..++
T Consensus        88 ----~~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~~  163 (323)
T PHA02834         88 ----LNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLY  163 (323)
T ss_pred             ----cCCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHHHH
Confidence                1259999 89999999999999999999999999999999999987555567777888999999999997776544


Q ss_pred             ccc--CCceeeeccCcCcccch--hhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11830        277 SSY--STTSICLPMDTRHLGSK--IYVH-TLLLFSSLVFAMICVCYFQIYSSLGNVL  328 (387)
Q Consensus       277 ~~~--~~~~~C~~~~~~~~~~~--~~~~-~~~~~~~iPl~ii~~~Y~~I~~~lr~~~  328 (387)
                      ...  ++...|...........  .+.. ..+..+++|+++|++||.+|++++|+++
T Consensus       164 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~  220 (323)
T PHA02834        164 YVDNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCK  220 (323)
T ss_pred             HhccCCCceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            322  23346863222111111  1111 1245568999999999999999998753

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.93  E-value=1.5e-25  Score=220.10  Aligned_cols=192  Identities=16%  Similarity=0.166  Sum_probs=139.3

Q ss_pred             hHHHHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeee-ccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11830        114 AMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLS-RTSE-KSVPRFLISHLAMADLCMAFYLLLLAIKD  191 (387)
Q Consensus       114 ~~ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~-~~~l-~t~~~~~i~nLavaDll~~~~~~~~~~~~  191 (387)
                      +.+.....++..+++++|+              +||++|++++.+ +|.+ ++.+++|+.|||+||+++. +.+|..+..
T Consensus        29 ~~~~~~~~~~~~li~vvGi--------------igN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~   93 (409)
T PHA03235         29 SAARTTETFINLLIISVGG--------------PLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLS   93 (409)
T ss_pred             hhhHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            3345567777777777887              999999987543 3332 4567899999999999875 455555421


Q ss_pred             hhccceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhh
Q psy11830        192 LQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGA  270 (387)
Q Consensus       192 ~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~  270 (387)
                         .      ...|..| ..|++.+++...+..+|++++++||+|||++|++|.++++.+++++..+++++|+.++++++
T Consensus        94 ---~------~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~  164 (409)
T PHA03235         94 ---N------QGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSG  164 (409)
T ss_pred             ---c------CccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHH
Confidence               0      1124445 78999999999999999999999999999999999866556788999999999999999996


Q ss_pred             hhhhee-----ccc----CCceeeeccCcCcccc---hhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830        271 LPMFGI-----SSY----STTSICLPMDTRHLGS---KIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLT  329 (387)
Q Consensus       271 ~p~~~~-----~~~----~~~~~C~~~~~~~~~~---~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~  329 (387)
                      |+.+..     +.+    .+...|...+..+...   ..|.+. .++.+++|+++|++||.+|++++|++.+
T Consensus       165 P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~  236 (409)
T PHA03235        165 PAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY  236 (409)
T ss_pred             HHHHHHhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            654321     111    1244687554433221   123333 3455799999999999999999987643

>KOG4220|consensus

Probab=99.93  E-value=3.7e-26  Score=213.01  Aligned_cols=188  Identities=19%  Similarity=0.214  Sum_probs=155.9

Q ss_pred             HHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceee
Q psy11830        120 MAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYF  199 (387)
Q Consensus       120 ~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~  199 (387)
                      +++...+++.+++              .||++|++.+.-+|+++|..|+|+.+||+||+..|++.+|+.....+.     
T Consensus        33 i~~v~~~lsLVTv--------------~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lm-----   93 (503)
T KOG4220|consen   33 IVVVTGSLSLVTV--------------VGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLM-----   93 (503)
T ss_pred             eehhhhHHHHHhh--------------hccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHH-----
Confidence            4555666777776              999999999999999999999999999999999999999988755443     


Q ss_pred             ccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh-ee
Q psy11830        200 NYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF-GI  276 (387)
Q Consensus       200 ~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~-~~  276 (387)
                         +.|++| .+|.+...+.++.+.+|++.|..||+|||+.|.+|+.|+. +|.+|+..+|++.|++|+++- +|.+ .|
T Consensus        94 ---g~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLW-aPaIl~W  169 (503)
T KOG4220|consen   94 ---GYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLW-APAILFW  169 (503)
T ss_pred             ---cccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence               379999 9999999999999999999999999999999999999999 999999999999999999998 6655 44


Q ss_pred             cccC-----CceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccce
Q psy11830        277 SSYS-----TTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADL  332 (387)
Q Consensus       277 ~~~~-----~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~~  332 (387)
                      ....     ..+.|.-.+-+.+.  ......+..|-+|..+|.+.|++|++..+++.+...
T Consensus       170 qyivGkrTv~~~eC~iQFlsnp~--iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~  228 (503)
T KOG4220|consen  170 QYIVGKRTVPDGECYIQFLSNPA--ITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELA  228 (503)
T ss_pred             HhheeeeecCCCceEEEeecCce--eehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3322     35568644333211  112223556789999999999999999998877554

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.92  E-value=1.2e-24  Score=214.66  Aligned_cols=187  Identities=18%  Similarity=0.347  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy11830        116 ADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQST  195 (387)
Q Consensus       116 ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~  195 (387)
                      +.++..+|.+ +.+.|+              +||++|++++. +|++|+++|+++.|||++|++.++. .|..+...   
T Consensus        98 ~~~l~~~y~l-vfvlgl--------------iGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l~-lPf~i~~~---  157 (417)
T PHA02638         98 SEYIKIFYII-IFILGL--------------FGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVID-FPFIIYNE---  157 (417)
T ss_pred             hhHHHHHHHH-HHHHHH--------------HHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHH---
Confidence            3455555554 555565              99999997765 4788999999999999999988654 44444221   


Q ss_pred             ceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhh
Q psy11830        196 EVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPM  273 (387)
Q Consensus       196 ~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~  273 (387)
                            .++|.+| ..|++..++...+..+|+++++++++|||+||+||.++++ .+++++...++++|+.++++++|++
T Consensus       158 ------~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~  231 (417)
T PHA02638        158 ------FDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAY  231 (417)
T ss_pred             ------hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHH
Confidence                  1369999 8999999999999999999999999999999999999888 7888888899999999999998887


Q ss_pred             heeccc---------C---CceeeeccCcCcccc-----hhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11830        274 FGISSY---------S---TTSICLPMDTRHLGS-----KIYVH-TLLLFSSLVFAMICVCYFQIYSSLGNVL  328 (387)
Q Consensus       274 ~~~~~~---------~---~~~~C~~~~~~~~~~-----~~~~~-~~~~~~~iPl~ii~~~Y~~I~~~lr~~~  328 (387)
                      +..+..         +   ....|...++.+...     ..+.. ..++.+++|++++++||.+|++++++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~  304 (417)
T PHA02638        232 FIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLK  304 (417)
T ss_pred             HHhhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            643321         1   134686544322211     11111 2344568999999999999999997643

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.90  E-value=3.6e-25  Score=202.37  Aligned_cols=177  Identities=24%  Similarity=0.397  Sum_probs=148.6

Q ss_pred             cccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHHHHH
Q psy11830        148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLSI  226 (387)
Q Consensus       148 gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si  226 (387)
                      ||++++.++.++|++|++.++++.|||++|++.++..+|........        ++|..| ..|++..++...+..+|.
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~--------~~~~~~~~~C~~~~~~~~~~~~~s~   72 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLF--------DDWIFSSFLCRIFGFLFYFSSFSSI   72 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--------SSCTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccc--------ccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999999998888755442        468888 899999999999999999


Q ss_pred             HHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheecc--cC--CceeeeccCcCcccchhhhHH
Q psy11830        227 FTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGISS--YS--TTSICLPMDTRHLGSKIYVHT  301 (387)
Q Consensus       227 ~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~--~~--~~~~C~~~~~~~~~~~~~~~~  301 (387)
                      ++++++|+|||++|++|.++++ .+++++...++.+|+.+++.++++......  ..  ....|............+...
T Consensus        73 ~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~  152 (257)
T PF00001_consen   73 FSLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYF  152 (257)
T ss_dssp             HHHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999 999999999999999999999888665332  11  246798665544323334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccce
Q psy11830        302 LLLFSSLVFAMICVCYFQIYSSLGNVLTADL  332 (387)
Q Consensus       302 ~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~~  332 (387)
                      ..+.+++|++++.++|.+|++.+|+++++..
T Consensus       153 ~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~  183 (257)
T PF00001_consen  153 FIVFFILPLIIILICYIRILRKLRRQRKRIK  183 (257)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHCTC
T ss_pred             cccccccceeeeeeecccccccccccccccc
Confidence            5666789999999999999999999888543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.89  E-value=2.1e-22  Score=193.89  Aligned_cols=188  Identities=18%  Similarity=0.255  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830        118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV  197 (387)
Q Consensus       118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~  197 (387)
                      ....++..++++.|+              +||+++++++.++ ++|++.|+++.|||++|++.++..++.. ...     
T Consensus        41 ~~~~~~~~~i~~~gl--------------~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~-~~~-----   99 (335)
T PHA03087         41 TILIVVYSTIFFFGL--------------VGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQI-YYY-----   99 (335)
T ss_pred             hHHHHHHHHHHHHHH--------------HhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHH-HHH-----
Confidence            445666666777777              9999999999888 8899999999999999998877644432 221     


Q ss_pred             eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830        198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFG  275 (387)
Q Consensus       198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~  275 (387)
                         ...+|.+| ..|++..++...+..+|++++++||+|||++|++|+++++ .+++++..+++++|+.+++.+.|+...
T Consensus       100 ---~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~  176 (335)
T PHA03087        100 ---ILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFV  176 (335)
T ss_pred             ---hCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhhe
Confidence               12368888 8999999999999999999999999999999999999988 999999999999999999988666554


Q ss_pred             ecc--cCCceeeeccCcCcccc-hhhhH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830        276 ISS--YSTTSICLPMDTRHLGS-KIYVH--TLLLFSSLVFAMICVCYFQIYSSLGNVLT  329 (387)
Q Consensus       276 ~~~--~~~~~~C~~~~~~~~~~-~~~~~--~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~  329 (387)
                      +..  ..+...|.+.++..... ..+..  ...+.+++|.++++++|.+|.++++++++
T Consensus       177 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~  235 (335)
T PHA03087        177 YTTKKDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK  235 (335)
T ss_pred             eeeeccCCCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            432  23345676555422221 22221  12345689999999999999998887643

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.37  E-value=2.9e-12  Score=118.71  Aligned_cols=168  Identities=16%  Similarity=0.150  Sum_probs=114.8

Q ss_pred             hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLS  225 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~S  225 (387)
                      +||+.++.++.++|++|+|.++++..+|++|++.+....|.....+.  +        -... ..|-.+.+...++....
T Consensus         6 ~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~--~--------~~i~~~~Cf~~~~~~~f~~~~q   75 (257)
T PF10320_consen    6 FGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFR--D--------HQITRSECFWQIFFYIFFQCAQ   75 (257)
T ss_pred             EccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHh--h--------eeccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888877763321  1        1112 57988888888999999


Q ss_pred             HHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheecccCCceeeeccCcC-cccchhhhHHHH
Q psy11830        226 IFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMDTR-HLGSKIYVHTLL  303 (387)
Q Consensus       226 i~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~~~  303 (387)
                      ...+.+|++||++||+.|.+|++ .+++..........+.+.......+ ...+.+....|.+...- +.....+.... 
T Consensus        76 s~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~C~pp~a~~~~~~~~~~~~~-  153 (257)
T PF10320_consen   76 SVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGF-LYRDDETIVICNPPLAFHGTASQIWSYSN-  153 (257)
T ss_pred             HHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhhee-EecCCcccccCCCccccCccHHHHHHHHH-
Confidence            99999999999999999999999 7776555555555555554432222 22223345678754322 22222222222 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830        304 LFSSLVFAMICVCYFQIYSSLGNVLT  329 (387)
Q Consensus       304 ~~~~iPl~ii~~~Y~~I~~~lr~~~~  329 (387)
                         ++.-+++++.|...+...+++++
T Consensus       154 ---~~inv~tvivY~i~~~~~~~k~~  176 (257)
T PF10320_consen  154 ---IIINVITVIVYIITIIIFKRKSR  176 (257)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHcc
Confidence               22223345566666666666555

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=99.29  E-value=1.6e-12  Score=121.24  Aligned_cols=212  Identities=27%  Similarity=0.343  Sum_probs=144.8

Q ss_pred             ccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHH
Q psy11830         98 SRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMAD  177 (387)
Q Consensus        98 ~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaD  177 (387)
                      ..|+|++ ..+.-|..-.+....++..|+++..++              .||.+|+..+...+.+.+++.+++.|||+||
T Consensus         6 ~~C~P~~-da~~pcEdllg~~~lRi~vW~i~~lAi--------------~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad   70 (363)
T KOG2087|consen    6 ITCKPSP-DAFNPCEDLLGYWILRISVWVIALLAI--------------VGNLLVLLTRFTSRYELNSHRFLICNLAFAD   70 (363)
T ss_pred             ceecCCC-CCCCcHHHhhccceeeehhhhhhhHHh--------------ccCeeeeeeeeehhhhccchHHHHHHHHHHH
Confidence            3455544 233444444456677888999999998              9999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccceeeccccCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhh
Q psy11830        178 LCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYF  257 (387)
Q Consensus       178 ll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~  257 (387)
                      +++|++...+..+|..++|+|++++..|            +....+.-..+++..|-|                -....+
T Consensus        71 ~~mGiYl~~ia~vD~~~~gey~~~ai~W------------~tg~gC~~aGflavFASE----------------lSv~~L  122 (363)
T KOG2087|consen   71 LLMGIYLGLIASVDAKTRGEYYKHAIDW------------QTGLGCPVAGFLAVFASE----------------LSVFLL  122 (363)
T ss_pred             HHcchHHHHHHHhhHHHHHHHHHHHHhh------------hhcCCCchHHHHHHHHHH----------------HHHHHH
Confidence            9999999999999999999999998888            455555566777777777                111111


Q ss_pred             hHHHHHHHHHHhhhhhheecccCCceeeeccCcCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeeee
Q psy11830        258 ILVGYVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKI-YVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADLLFLI  336 (387)
Q Consensus       258 i~~iWi~s~~~~~~p~~~~~~~~~~~~C~~~~~~~~~~~~-~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~~~~~~  336 (387)
                      ...+|--..... -               +...+...... .....+..++..++.-                   ..+.
T Consensus       123 T~itlEr~l~i~-~---------------p~~~~~~~~lr~~~~ill~~wl~~~l~A-------------------~~Pl  167 (363)
T KOG2087|consen  123 TLITLERWLSIT-Y---------------PFRLDRKAKLRPLVLILLLGWLFAFLMA-------------------LLPL  167 (363)
T ss_pred             HHHHHHHHhhee-c---------------cccCCCcccccHHHHHHHHHHHHHHHHH-------------------hccc
Confidence            111221111111 1               11111111111 1222222222222221                   1155


Q ss_pred             eeeeeeccCCccccCCcccccee-EEEEEeeeehhhhhhhhheeeeecccCC
Q psy11830        337 TGISSYSTTSICLPMDTRHLGSK-IYVHTLLLFSSLVFAMICVCYFQIYSSL  387 (387)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~f~~f~~cylpi~~~~  387 (387)
                      .+.+.|++++.|.|.+.++.-++ -+....+.+|.+.|+++++||.-||+++
T Consensus       168 ~g~s~Y~~~~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l  219 (363)
T KOG2087|consen  168 FGISSYGASSVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSL  219 (363)
T ss_pred             cCCCCCcccceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheee
Confidence            66799999999999988887666 3666677999999999999999998864

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.99  E-value=3e-09  Score=99.53  Aligned_cols=177  Identities=12%  Similarity=0.138  Sum_probs=120.2

Q ss_pred             hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccCccchhhhHHHHHHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSI  226 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~Si  226 (387)
                      +.|.+++..+.+.+++|++-+.+-.+.|++|.+.+.............+...   ..+|.   .=.+.+.........+.
T Consensus         9 ~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~---~~~~~---~s~~~g~~~~~~y~~~~   82 (274)
T PF10328_consen    9 ILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISF---LPSSL---NSIIFGFIGMFCYFIGP   82 (274)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---CchHH---HHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999886554443333222111   11111   12334677778888899


Q ss_pred             HHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheecc---cCCceeeeccCcCcccchhhhH-H
Q psy11830        227 FTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGISS---YSTTSICLPMDTRHLGSKIYVH-T  301 (387)
Q Consensus       227 ~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~---~~~~~~C~~~~~~~~~~~~~~~-~  301 (387)
                      .+-.+||++|+.||..|.+|++ .+.+.+..++++.|+.++....++....+.   ++....-+.. +.++.-..+.. .
T Consensus        83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~-~~~~~C~~~~~~~  161 (274)
T PF10328_consen   83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSY-PTDPPCGNYSWYF  161 (274)
T ss_pred             HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeec-CCCCccchhhhHH
Confidence            9999999999999999999999 999999999999999998766455442221   1111111111 11111112222 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830        302 LLLFSSLVFAMICVCYFQIYSSLGNVLTA  330 (387)
Q Consensus       302 ~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~  330 (387)
                      ......+-.+++..++..++.++++.+++
T Consensus       162 ~~~~~~~~~~~~~~lni~t~ikl~~~~~~  190 (274)
T PF10328_consen  162 DFYKNFILVIISNILNIITFIKLRKFRKK  190 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            22233455667777888888888877664

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.81  E-value=1.6e-08  Score=96.65  Aligned_cols=186  Identities=16%  Similarity=0.065  Sum_probs=124.6

Q ss_pred             hcccceeeeeeeccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-eeeccccCcccC-ccchhhhHHHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSEKS-VPRFLISHLAMADLCMAFYLLLLAIKDLQSTE-VYFNYAYDWQKG-YGCKVAGFVTVFASQ  223 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l~t-~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~-~~~~~~~~w~~g-~~C~~~~~~~~~~~~  223 (387)
                      ++|++-+.++. +|++|+ +.|.++..+|++|++..+...+.......... ...-....+... ....+...+...+..
T Consensus        12 ~~N~~h~~VLt-rk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~   90 (318)
T PF10324_consen   12 FINIFHLIVLT-RKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRR   90 (318)
T ss_pred             HHHHHHhhhcC-ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            88988887774 566665 88999999999999999998887775543221 000000011111 234556678888999


Q ss_pred             HHHHHHHHHHHHHHhheecccccc--c-cccchhhhhhHHHHHHHHHHhhhhhheeccc------CCceeeeccC---cC
Q psy11830        224 LSIFTLGMITLERWYSIKRALYAN--K-LTIHRTTYFILVGYVYASIMGALPMFGISSY------STTSICLPMD---TR  291 (387)
Q Consensus       224 ~Si~~L~~isidRy~aI~~P~~~~--~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~------~~~~~C~~~~---~~  291 (387)
                      .|.|..++||+.|++++.+|++.+  + .+++.+...+.++++.+.++.++.++...-.      .+...|....   ..
T Consensus        91 ~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~~~~~  170 (318)
T PF10324_consen   91 ISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPENYTF  170 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeeccccccc
Confidence            999999999999999999998875  4 6778888888888888888885555433211      1344586211   11


Q ss_pred             ccc-----------c----hhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhcccee
Q psy11830        292 HLG-----------S----KIYVHTLLLF-SSLVFAMICVCYFQIYSSLGNVLTADLL  333 (387)
Q Consensus       292 ~~~-----------~----~~~~~~~~~~-~~iPl~ii~~~Y~~I~~~lr~~~~~~~~  333 (387)
                      +..           +    ..+...-.+. -++|.++..+....+.+.+||.+++++.
T Consensus       171 ~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~  228 (318)
T PF10324_consen  171 PRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKK  228 (318)
T ss_pred             cccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhc
Confidence            100           0    0111111223 4799999999999999999988876653

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.62  E-value=3.9e-08  Score=69.90  Aligned_cols=47  Identities=28%  Similarity=0.312  Sum_probs=45.8

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++|+|+.||+..|+++++|+.|+|++|.|+.+++.+|.++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l   48 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNL   48 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCC
Confidence            68999999999999999999999999999999999999999999887

...

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=98.55  E-value=1.7e-06  Score=76.81  Aligned_cols=159  Identities=15%  Similarity=0.165  Sum_probs=97.9

Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11830        160 TSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYS  239 (387)
Q Consensus       160 ~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~Si~~L~~isidRy~a  239 (387)
                      +++++-.+-++.||.+||++.++..+.........+       +....+..|..+|++......++-+...+||+.-|+.
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~-------~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~  102 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARG-------GIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLI  102 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566999999999999988665444322211       1222237999999999999999999999999999999


Q ss_pred             eecccc------ccc--c--ccchhhhhhHHHHHHHHHHhhhhhheecccCC-ceeeeccCcCcccchhhhHHHHHHHHH
Q psy11830        240 IKRALY------ANK--L--TIHRTTYFILVGYVYASIMGALPMFGISSYST-TSICLPMDTRHLGSKIYVHTLLLFSSL  308 (387)
Q Consensus       240 I~~P~~------~~~--~--t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~-~~~C~~~~~~~~~~~~~~~~~~~~~~i  308 (387)
                      |.+|-.      ..+  .  .+..+.....+.|++...++..+ .+.+.|.+ ...|+-.......+   .....+--++
T Consensus       103 v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~-~~~~~Y~~~g~WCWi~~~~~~~R---l~l~y~~~~~  178 (201)
T PF11710_consen  103 VFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIG-LGGPGYGPAGAWCWIPSRYEWYR---LWLHYIWRFI  178 (201)
T ss_pred             HhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhc-cccCcccccCcEEEECCCcHHHH---HHHHHHHHHH
Confidence            999922      111  1  11222233335555544444332 11222333 55787332222111   1122222345


Q ss_pred             HHHHHHHHHHHHHHHHhhhhc
Q psy11830        309 VFAMICVCYFQIYSSLGNVLT  329 (387)
Q Consensus       309 Pl~ii~~~Y~~I~~~lr~~~~  329 (387)
                      -.+.+++.|..|+..+||+.+
T Consensus       179 ~~~~~i~iY~~if~~lrr~~~  199 (201)
T PF11710_consen  179 IIFAIIIIYIAIFFYLRRRIR  199 (201)
T ss_pred             HHHHHHHHHHHHHHHHhhhhc
Confidence            667788899999999999876

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.45  E-value=1.3e-07  Score=88.90  Aligned_cols=162  Identities=14%  Similarity=0.156  Sum_probs=103.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccceeeccccCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhe
Q psy11830        162 EKSVPRFLISHLAMADLCMAFYLLLLAIKDLQ-STEVYFNYAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSI  240 (387)
Q Consensus       162 l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~-~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI  240 (387)
                      .+++-+-++.+-++||++..+........... ...+.+...++|.    -++...........-....+.+|+.||.||
T Consensus        29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~~~y~~~~~~~~gi~lls~nR~~ai  104 (283)
T PF10323_consen   29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYY----AAIYYNIAYYFLYIQCIGIVLLSLNRYLAI  104 (283)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchh----HHHHHHHHHHHHHHHHHhHHHHHHhhhheE
Confidence            57899999999999999998875544432222 0111111112221    244444555566667788899999999999


Q ss_pred             eccc-cccc-cccchhhhhhHHHHHHHHHHhhhhhheeccc--CCceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHH
Q psy11830        241 KRAL-YANK-LTIHRTTYFILVGYVYASIMGALPMFGISSY--STTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVC  316 (387)
Q Consensus       241 ~~P~-~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~--~~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~  316 (387)
                      ++|. ++++ .++.+...++++-|+.+.+.+ .|.+...+.  +.... .+...+................+-.+..+++
T Consensus       105 ~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~-~~~~~~~~~~f~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~cv~~iv~  182 (283)
T PF10323_consen  105 CFPTSRHTKFWQPAKIWIIILIQWIPPLLIS-LPFFFDTDFYFDNEEN-MSLFVDPEFIQRNFLIAFIFVSVTCVICIVC  182 (283)
T ss_pred             EeecHHHhhhccccchhheeeeeehhhhhhe-eeeeccCceeeecccc-eeeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999 7777 889999999999999999988 554433322  11111 2111111111222222233345667788999


Q ss_pred             HHHHHHHHhhhhc
Q psy11830        317 YFQIYSSLGNVLT  329 (387)
Q Consensus       317 Y~~I~~~lr~~~~  329 (387)
                      |..++..+||+.+
T Consensus       183 Y~~i~~~iRk~~k  195 (283)
T PF10323_consen  183 YGIIFIFIRKRNK  195 (283)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999997754

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=98.25  E-value=7.4e-06  Score=77.26  Aligned_cols=127  Identities=15%  Similarity=0.205  Sum_probs=96.5

Q ss_pred             hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccCccchhhhHHHHHHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQLSI  226 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~Si  226 (387)
                      +|-++++..+...|+.|++.+-++.-++++|++..+.........           +.-..+..|++++++...+..++.
T Consensus        22 lGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~-----------~~~~~s~lC~~Qafliq~f~~as~   90 (303)
T PF05462_consen   22 LGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLSP-----------SAGENSFLCQFQAFLIQFFMLASF   90 (303)
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cCCCCCcchhhHhHHHHHhhHHHH
Confidence            888899999999999999999999999999999876654433210           011113689999999999999999


Q ss_pred             HHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhheecccC-Cceeeecc
Q psy11830        227 FTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYS-TTSICLPM  288 (387)
Q Consensus       227 ~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~-~~~~C~~~  288 (387)
                      +-.++||++=|..+++....   .+|.-.....++|.++++.+..|+..- .++ ....|+-.
T Consensus        91 lWt~~iA~nly~~~~~~~~~---~~k~e~~Y~l~~wGiPli~a~i~l~~~-~~g~~G~WCWI~  149 (303)
T PF05462_consen   91 LWTLCIAFNLYLTFVKRYDE---LEKLEKYYHLVCWGIPLIPAVIPLIGN-DYGPAGNWCWIK  149 (303)
T ss_pred             HHHHHHHHHhhheeEEcCcc---HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCCceeec
Confidence            88899999999999875432   235556678889999999888877543 333 34578743

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.21  E-value=9e-07  Score=58.31  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=35.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR   48 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~   48 (387)
                      .+|++|++++|+|+.||+ .++++++|+.|||++|+|+.+++-
T Consensus         1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~~l   42 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDISPL   42 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEGGG
T ss_pred             CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCcCC
Confidence            378999999999999986 478999999999999999988753

...

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=98.17  E-value=1.4e-05  Score=75.80  Aligned_cols=178  Identities=15%  Similarity=0.144  Sum_probs=111.2

Q ss_pred             hcccceeeeeee---ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccCccchhhhHHHHHHHH
Q psy11830        147 KGNAAVLAVTLS---RTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFASQ  223 (387)
Q Consensus       147 ~gN~lvi~vi~~---~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~~  223 (387)
                      +||++++.+-..   +++.-+|.+..+.+||++.++.................       .+..+..++...++..+...
T Consensus        22 ~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~f~~~   94 (303)
T PF05296_consen   22 LGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPN-------IYFSENVYKIIDFLWMFSNS   94 (303)
T ss_pred             HHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch-------hhhhhhHHHHHHHHHHHHhH
Confidence            999998877653   34444799999999999999988776655554443221       12222568888888888999


Q ss_pred             HHHHHHHHHHHHHHhheeccccccc-cccc----hhhhhhHHHHHHHH--HHhhhhhheecccC--Cceeeecc---CcC
Q psy11830        224 LSIFTLGMITLERWYSIKRALYANK-LTIH----RTTYFILVGYVYAS--IMGALPMFGISSYS--TTSICLPM---DTR  291 (387)
Q Consensus       224 ~Si~~L~~isidRy~aI~~P~~~~~-~t~~----~~~~~i~~iWi~s~--~~~~~p~~~~~~~~--~~~~C~~~---~~~  291 (387)
                      .|.|..+.+++-=++.|+..-+.-- .=++    ....++...++.++  ... .|........  ....+.+.   ...
T Consensus        95 ~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~-~~~~~~~~~~~~~~~~~~N~t~~~~~  173 (303)
T PF05296_consen   95 SSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLS-IPLFIDNHINNNNTNNSRNSTSNFQE  173 (303)
T ss_pred             HHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhheeeeeccccccCCCcceEEeec
Confidence            9999999999999999987654322 1112    22234455566666  333 2322211111  11111111   111


Q ss_pred             cccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccce
Q psy11830        292 HLGSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLTADL  332 (387)
Q Consensus       292 ~~~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~~  332 (387)
                      +.....+... .....++|++++..+-..+...++||.|+.+
T Consensus       174 ~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~  215 (303)
T PF05296_consen  174 SKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQ  215 (303)
T ss_pred             chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1112222222 2355689999999999999999999999765

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>KOG4237|consensus

Probab=98.11  E-value=8.7e-07  Score=83.90  Aligned_cols=71  Identities=18%  Similarity=0.285  Sum_probs=55.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc-CCCCccccC-CCCCCCch
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK-IRPEQKLNP-RPSAYNTY   78 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~-~~~~~~~~p-~~~~~~~~   78 (387)
                      .+.++++|+.|+|++||+..|+++++|+.|||++|+|+.|.+.+|.|+  ..+.++ ...+.+... ..+.|..-
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL--~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL--ASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh--HhhhHHHhhcCCchhhhhhhHhhhH
Confidence            356899999999999999999999999999999999999999999998  333322 222233333 45666663

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.88  E-value=0.00013  Score=67.35  Aligned_cols=162  Identities=12%  Similarity=0.098  Sum_probs=103.8

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy11830        161 SEKSVPRFLISHLAMADLCMAFY-LLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWY  238 (387)
Q Consensus       161 ~l~t~~~~~i~nLavaDll~~~~-~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~  238 (387)
                      ++.+|.+..+.+||+|+.++.+. .+|.... ....        + .++ .+||+..|+.-++-..|+.+.+.+|+-.-+
T Consensus         6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~~~--------~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAI   75 (265)
T PF03402_consen    6 HRLKPIDLILIHLALANILVLLSRGIPQTMA-FFGW--------K-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAI   75 (265)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH-Hhhc--------c-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhE
Confidence            45589999999999999999876 3443321 1100        1 134 889999999999999999999999997766


Q ss_pred             heeccccc---cc-cccchhhhhhHHHHHHHHHHhhh-hhh--eecccC------CceeeeccCcCcccchhhhHHHHHH
Q psy11830        239 SIKRALYA---NK-LTIHRTTYFILVGYVYASIMGAL-PMF--GISSYS------TTSICLPMDTRHLGSKIYVHTLLLF  305 (387)
Q Consensus       239 aI~~P~~~---~~-~t~~~~~~~i~~iWi~s~~~~~~-p~~--~~~~~~------~~~~C~~~~~~~~~~~~~~~~~~~~  305 (387)
                      .|.-.-..   -+ ..++.....+...|++..++... +..  +..+..      ....|.....+......+.+...+-
T Consensus        76 tISP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~  155 (265)
T PF03402_consen   76 TISPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFR  155 (265)
T ss_pred             EEecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhh
Confidence            66533221   12 45566677788889988776532 111  111111      1235753322222223333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccce
Q psy11830        306 SSLVFAMICVCYFQIYSSLGNVLTADL  332 (387)
Q Consensus       306 ~~iPl~ii~~~Y~~I~~~lr~~~~~~~  332 (387)
                      -++.+.+|+.+-+.+...+.||++|.+
T Consensus       156 D~~fvgLM~~aSgyMV~~L~RH~q~Vq  182 (265)
T PF03402_consen  156 DVLFVGLMIWASGYMVFLLYRHHQQVQ  182 (265)
T ss_pred             HHHHHHHHHhhhhhheeeeeecccccc
Confidence            367778888888899999999988543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.76  E-value=2.1e-05  Score=55.68  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=35.7

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNI   42 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i   42 (387)
                      .+|++|++++|+|+.+|+..|.++++|+.|+|++|+|
T Consensus        25 ~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   25 PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            6899999999999999999999999999999999986

...

>KOG4194|consensus

Probab=97.44  E-value=1.9e-05  Score=78.44  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=62.6

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCc---cc-cCCCCCCCchhh
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQ---KL-NPRPSAYNTYYN   80 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~---~~-~p~~~~~~~~~~   80 (387)
                      -.+|.+|||+.|+|+.+|+..|..|..|++|+|+.|.|.++.+.+|.++  ++++.+.....   .| ++...+|++-..
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l--ssL~~LdLr~N~ls~~IEDaa~~f~gl~~  393 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL--SSLHKLDLRSNELSWCIEDAAVAFNGLPS  393 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh--hhhhhhcCcCCeEEEEEecchhhhccchh
Confidence            3689999999999999999999999999999999999999999999998  55554432222   23 447777777333


Q ss_pred             hHHhhhccCe
Q psy11830         81 FTRLIFPGNA   90 (387)
Q Consensus        81 ~l~~~~~gn~   90 (387)
                      .-++.+.||-
T Consensus       394 LrkL~l~gNq  403 (873)
T KOG4194|consen  394 LRKLRLTGNQ  403 (873)
T ss_pred             hhheeecCce
Confidence            3233344443

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.38  E-value=0.0064  Score=58.30  Aligned_cols=121  Identities=14%  Similarity=0.010  Sum_probs=78.4

Q ss_pred             hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLS  225 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~S  225 (387)
                      ..++..++...+++..|.-..+.+....++.++.++........+....- ....+-+...+ .-|-.......++...+
T Consensus        32 ~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~-~~~~~Cd~~~~~~~C~~lR~~~~~~~~~~  110 (324)
T PF10292_consen   32 PVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYF-FPDDPCDMIPSTYRCFILRIPYNFGLFLV  110 (324)
T ss_pred             HHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCcccccchhHHHHHHHHHHHHHHHH
Confidence            44444444444555567777788888888888877665544443332110 00222234444 67888888889999999


Q ss_pred             HHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHH
Q psy11830        226 IFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIM  268 (387)
Q Consensus       226 i~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~  268 (387)
                      ..+..++++||++|-++.-+|.+.++.-...+..+-|+++...
T Consensus       111 ~~t~v~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~~  153 (324)
T PF10292_consen  111 SFTTVSLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLLI  153 (324)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988743333344444445555443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>KOG4237|consensus

Probab=97.35  E-value=3.4e-05  Score=73.38  Aligned_cols=83  Identities=14%  Similarity=0.316  Sum_probs=60.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCchhhhHHh
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNTYYNFTRL   84 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~l~~   84 (387)
                      .+|+.|++++|+|+.|.++.|.++.++++|+|..|+|..+++..|.++  +.++-+..-+.+.+- .|.+|++....-++
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~l--s~L~tL~L~~N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGL--SGLKTLSLYDNQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcc--ccceeeeecCCeeEEEecccccccceeeee
Confidence            468999999999999999999999999999999999999999999998  555544433322222 45666664433333


Q ss_pred             hhccCe
Q psy11830         85 IFPGNA   90 (387)
Q Consensus        85 ~~~gn~   90 (387)
                      -+++|-
T Consensus       352 ~l~~Np  357 (498)
T KOG4237|consen  352 NLLSNP  357 (498)
T ss_pred             ehccCc
Confidence            333443

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=97.34  E-value=0.0021  Score=61.14  Aligned_cols=179  Identities=14%  Similarity=0.140  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHhhccc
Q psy11830        118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL-LLLAIKDLQSTE  196 (387)
Q Consensus       118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~-~~~~~~~~~~~~  196 (387)
                      ...|+|.++.++.-.              +-.+..+.++.+++..|++.+-.+.-||+.|++..... +..+... .   
T Consensus        33 p~~G~~~~~~g~~~~--------------~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~-i---   94 (313)
T PF10321_consen   33 PILGIYFLIFGIIII--------------ILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILA-I---   94 (313)
T ss_pred             cchhHHHHHHHHHHH--------------HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHH-h---
Confidence            446666666655543              55666666777777778899999999999999988664 2222211 1   


Q ss_pred             eeeccccCcccC-ccchh------hhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHH--H-H
Q psy11830        197 VYFNYAYDWQKG-YGCKV------AGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYV--Y-A  265 (387)
Q Consensus       197 ~~~~~~~~w~~g-~~C~~------~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi--~-s  265 (387)
                                .| ..|+.      .|.+...+..++...-..++++|..-+..|..... ...+++...+.+..+  . +
T Consensus        95 ----------~G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~  164 (313)
T PF10321_consen   95 ----------FGAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYF  164 (313)
T ss_pred             ----------cCccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHH
Confidence                      12 33433      34555667778888889999999999999987776 666665554443332  2 3


Q ss_pred             HHHhhhhhheecccCCceeeeccCc---Ccccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830        266 SIMGALPMFGISSYSTTSICLPMDT---RHLGSKIYV-HTLLLFSSLVFAMICVCYFQIYSSLGNVLT  329 (387)
Q Consensus       266 ~~~~~~p~~~~~~~~~~~~C~~~~~---~~~~~~~~~-~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~  329 (387)
                      ..+. +|...-.++    .++..++   ++.....|. .....-.++-.+.+..+|+.+...++++.+
T Consensus       165 ~~fT-~pv~Fns~~----~sw~fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~  227 (313)
T PF10321_consen  165 SFFT-PPVLFNSEY----MSWFFDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSK  227 (313)
T ss_pred             HHHc-CcccCCCCc----ceEecCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3332 554422221    1221111   111222232 233333466677788899999888888765

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG4194|consensus

Probab=97.14  E-value=0.00014  Score=72.41  Aligned_cols=48  Identities=35%  Similarity=0.534  Sum_probs=44.0

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      |+|..|+|++|+|..+|...|++|++|+.|+|--|+|+.++..+|.|+
T Consensus       197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL  244 (873)
T KOG4194|consen  197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL  244 (873)
T ss_pred             chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence            588999999999999999999999999999999999999999999887

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.83  E-value=0.00049  Score=62.93  Aligned_cols=126  Identities=10%  Similarity=0.089  Sum_probs=0.0

Q ss_pred             hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCccc---CccchhhhHHHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK---GYGCKVAGFVTVFASQ  223 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~---g~~C~~~~~~~~~~~~  223 (387)
                      ++-++.+......|+.|+..+....||++++++..+.........           .....   +..|+..+.+...+..
T Consensus        16 ~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~-----------~~~~~~~~~~~C~~~a~~~hy~~l   84 (242)
T PF00002_consen   16 ICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQT-----------FSPISTTNHCLCRAIAILLHYFFL   84 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhc-----------cccccccccccchhhhhHhHHHHH
Confidence            555555666666677888778888999999998776543321100           01111   1259999999999999


Q ss_pred             HHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhheecccCCceeee
Q psy11830        224 LSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICL  286 (387)
Q Consensus       224 ~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~~~~C~  286 (387)
                      ++..-+.+++++=|..++++...   .+++........|..+++.............+...|+
T Consensus        85 a~f~Wm~~~~~~l~~~~~~~~~~---~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~CW  144 (242)
T PF00002_consen   85 ASFFWMLVEAFYLYRLLVKVFNS---SRRRFWWYYLIGWGIPALIVVISVAVNSDGYGNDNCW  144 (242)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhheeEEEeecc---cchhhheeeeeeecCcceeeeeeeeeccccccccccc
Confidence            99999999999999999887332   3456666777889888777644444332222334575

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>KOG4219|consensus

Probab=96.73  E-value=0.0016  Score=62.37  Aligned_cols=47  Identities=26%  Similarity=0.475  Sum_probs=42.5

Q ss_pred             hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhc
Q psy11830         84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVK  130 (387)
Q Consensus        84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~  130 (387)
                      +|+.||.+|+++.+..++-+++.+..+.|||+||.+|+++-...-..
T Consensus        48 vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~   94 (423)
T KOG4219|consen   48 VAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQ   94 (423)
T ss_pred             HHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            58999999999998888999999999999999999999998776554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.44  E-value=0.0011  Score=57.61  Aligned_cols=39  Identities=13%  Similarity=0.155  Sum_probs=11.0

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      +|..|++++|+|+.|+.  +..+++|+.|+|++|+|+++++
T Consensus        43 ~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~   81 (175)
T PF14580_consen   43 KLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISE   81 (175)
T ss_dssp             T--EEE-TTS--S--TT------TT--EEE--SS---S-CH
T ss_pred             CCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCcccc
Confidence            45556666666665542  3445556666666666665543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.40  E-value=0.0013  Score=57.10  Aligned_cols=45  Identities=13%  Similarity=0.118  Sum_probs=24.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAF   50 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f   50 (387)
                      ..|.+|++++|+|..+++.....+++|+.|+|++|+|+.++.-..
T Consensus        64 ~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~  108 (175)
T PF14580_consen   64 PRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEP  108 (175)
T ss_dssp             TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGG
T ss_pred             hhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHH
Confidence            578999999999999987655678999999999999999877544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.39  E-value=0.0024  Score=35.14  Aligned_cols=18  Identities=28%  Similarity=0.265  Sum_probs=10.9

Q ss_pred             ceeEEEecCCcceeeccc
Q psy11830         31 VMEVIFLGYNNIKIIEGR   48 (387)
Q Consensus        31 ~~~~l~l~~n~i~~~~~~   48 (387)
                      +|++|||++|+|+.+|+.
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            356666666666666655

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.23  E-value=0.0023  Score=35.26  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=19.1

Q ss_pred             ceeeEEEccCccccCCCCCcccc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSND   29 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~   29 (387)
                      +|++||+++|+|+.||+. |++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT-
T ss_pred             CccEEECCCCcCEeCChh-hcCC
Confidence            589999999999999988 7654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.11  E-value=0.083  Score=49.82  Aligned_cols=123  Identities=15%  Similarity=0.147  Sum_probs=83.1

Q ss_pred             hcccceeeeeeeccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---eeeccccCcccC-ccchhhhHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSE-KSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE---VYFNYAYDWQKG-YGCKVAGFVTVFA  221 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l-~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~---~~~~~~~~w~~g-~~C~~~~~~~~~~  221 (387)
                      +.|.+.++.+.++... -+...+++.|-|+.|++.++....... .....+   .++.++.--.+| ..|.....+...+
T Consensus        14 ~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~-R~i~~~~~~~~~~~GpC~~~~~~~C~~~y~~~~~~   92 (292)
T PF10317_consen   14 ILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQP-RIIPNGTSIAVISYGPCRYFGPWFCFFCYHIMLHF   92 (292)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCCCCcEEEEeeecceecCcHHHHHHHHHHHHH
Confidence            8899888887654433 356678999999999999877655442 222221   122222222234 5687777777778


Q ss_pred             HHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830        222 SQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMF  274 (387)
Q Consensus       222 ~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~  274 (387)
                      ...|.+++..--.-||..+.++..    ++++....+.+.+..++.......+
T Consensus        93 ~~~s~~~i~~sf~yRy~iL~~~~~----~~~~~i~~~~l~~~p~~~~~i~~~~  141 (292)
T PF10317_consen   93 SIHSGWSIILSFYYRYYILRNPSP----SRKRIIFICILIYIPSFSMLIFFFF  141 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHHHHHHHHHHHhc
Confidence            888889999999999999998754    4466777777777777666544443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.03  E-value=0.0027  Score=36.45  Aligned_cols=23  Identities=17%  Similarity=0.140  Sum_probs=19.4

Q ss_pred             ccceeEEEecCCcceeecccccc
Q psy11830         29 DLVMEVIFLGYNNIKIIEGRAFN   51 (387)
Q Consensus        29 ~~~~~~l~l~~n~i~~~~~~~f~   51 (387)
                      +.+|+.|+|++|+|+.+++..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788899999999999888885

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.03  E-value=0.0027  Score=36.45  Aligned_cols=23  Identities=17%  Similarity=0.140  Sum_probs=19.4

Q ss_pred             ccceeEEEecCCcceeecccccc
Q psy11830         29 DLVMEVIFLGYNNIKIIEGRAFN   51 (387)
Q Consensus        29 ~~~~~~l~l~~n~i~~~~~~~f~   51 (387)
                      +.+|+.|+|++|+|+.+++..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788899999999999888885

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.69  E-value=0.093  Score=48.88  Aligned_cols=96  Identities=13%  Similarity=0.096  Sum_probs=59.2

Q ss_pred             hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cceeeccccCcccCccchhhhHHHHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQS--TEVYFNYAYDWQKGYGCKVAGFVTVFASQL  224 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~--~~~~~~~~~~w~~g~~C~~~~~~~~~~~~~  224 (387)
                      ..|...+..+...|+.+++.-.++---.+.|.+.+....+........  ..+..  +.++    .=-..+.........
T Consensus        21 ~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~if~~~~p~~~~~~i   94 (273)
T PF10316_consen   21 LINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFL--DYKN----LIFYIGWPSSNLGSI   94 (273)
T ss_pred             HHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhh--cccc----EEeehhhhHHHHHHH
Confidence            778888888876666545555556667889999998875544433321  11111  0011    001112222333455


Q ss_pred             HHHHHHHHHHHHHhheeccccccc
Q psy11830        225 SIFTLGMITLERWYSIKRALYANK  248 (387)
Q Consensus       225 Si~~L~~isidRy~aI~~P~~~~~  248 (387)
                      .......||+||-+|+..|..|++
T Consensus        95 R~~l~~~Ia~dR~~A~~fPI~y~~  118 (273)
T PF10316_consen   95 RSILALIIALDRVFAVYFPIFYHN  118 (273)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHc
Confidence            667778899999999999999987

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>KOG0444|consensus

Probab=95.61  E-value=0.0028  Score=64.02  Aligned_cols=46  Identities=15%  Similarity=0.234  Sum_probs=34.2

Q ss_pred             cccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecccc
Q psy11830          4 YANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRA   49 (387)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~   49 (387)
                      ||+++.+|.|++|+|+.||...|.+|..|-.||||+|++..+|++.
T Consensus       124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~  169 (1255)
T KOG0444|consen  124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI  169 (1255)
T ss_pred             hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence            5667777777777777777777777777777777777777777654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=95.11  E-value=0.013  Score=33.69  Aligned_cols=21  Identities=33%  Similarity=0.211  Sum_probs=17.9

Q ss_pred             ccceeEEEecCCcceeecccc
Q psy11830         29 DLVMEVIFLGYNNIKIIEGRA   49 (387)
Q Consensus        29 ~~~~~~l~l~~n~i~~~~~~~   49 (387)
                      +.+|+.|||+.|.|+.++.-.
T Consensus         1 L~~L~~L~L~~NkI~~IEnL~   21 (26)
T smart00365        1 LTNLEELDLSQNKIKKIENLD   21 (26)
T ss_pred             CCccCEEECCCCccceecCcc
Confidence            468999999999999998764

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=94.88  E-value=0.28  Score=47.09  Aligned_cols=97  Identities=12%  Similarity=0.140  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccceeec------cccCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhe
Q psy11830        167 RFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFN------YAYDWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSI  240 (387)
Q Consensus       167 ~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~------~~~~w~~g~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI  240 (387)
                      .-.+..||+||++.++-++.-...-..+.. ...      ..+.|+- ..|.....-..++..++.+-+.+-|+|=|+.+
T Consensus        68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~-~~~s~s~~~~~d~wp~-afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~  145 (405)
T PF02101_consen   68 RRILFWLAVADLLACLGVIVRSSVWLGFPN-FIDSISDVNGTDIWPA-AFCVGSSMWIQLFYSATFWWTFCYAVDVYLVI  145 (405)
T ss_pred             chhHHHHHHHHHHhhhhHHHHhhhhhcCCc-ccccccCCCCCccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence            457899999999998876665554333221 111      1122321 57877765556677788888889999999988


Q ss_pred             eccccccccccchhhhhhHHHHHHHHHHhh
Q psy11830        241 KRALYANKLTIHRTTYFILVGYVYASIMGA  270 (387)
Q Consensus       241 ~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~  270 (387)
                      .+.-.     +.+....=.+.|..+.++..
T Consensus       146 ~~~ag-----~~~~~lYH~~aWgl~~lL~~  170 (405)
T PF02101_consen  146 RRSAG-----RSTIWLYHMMAWGLPALLCA  170 (405)
T ss_pred             eccCC-----CcchhHHHHHHHHHHHHHHH
Confidence            54321     12234555678888877663

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>KOG0472|consensus

Probab=94.68  E-value=0.01  Score=57.09  Aligned_cols=42  Identities=24%  Similarity=0.212  Sum_probs=35.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR   48 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~   48 (387)
                      +++..||+..|++++.|.... -+.+|+.||||+|+|+.++..
T Consensus       252 ~~l~vLDLRdNklke~Pde~c-lLrsL~rLDlSNN~is~Lp~s  293 (565)
T KOG0472|consen  252 NSLLVLDLRDNKLKEVPDEIC-LLRSLERLDLSNNDISSLPYS  293 (565)
T ss_pred             ccceeeeccccccccCchHHH-HhhhhhhhcccCCccccCCcc
Confidence            678889999999999998877 577899999999999988764

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.61  E-value=0.41  Score=45.99  Aligned_cols=97  Identities=15%  Similarity=0.115  Sum_probs=59.9

Q ss_pred             ccceeeeeeeccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce-eeccccCcccC-ccchhhhHHHHHHHHHH
Q psy11830        149 NAAVLAVTLSRTSEK-SVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV-YFNYAYDWQKG-YGCKVAGFVTVFASQLS  225 (387)
Q Consensus       149 N~lvi~vi~~~~~l~-t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~-~~~~~~~w~~g-~~C~~~~~~~~~~~~~S  225 (387)
                      ....+..+.++.-.+ +....++.+|..+++=-..+.....-  ..++.- +....-+..+. ..|.........+....
T Consensus        38 s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~--~lyrsf~~~~dpC~i~f~~~eC~~~~~~~~~~~~~~  115 (328)
T PF02117_consen   38 SVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIW--SLYRSFFYSDDPCSILFTSSECFPYYYFYYFTNSGM  115 (328)
T ss_pred             HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCCeeeEeecCceeeeehHHHHHHHHH
Confidence            333333333333334 44456778888887766555432211  111211 11222245555 77998888888888888


Q ss_pred             HHHHHHHHHHHHhheecccccc
Q psy11830        226 IFTLGMITLERWYSIKRALYAN  247 (387)
Q Consensus       226 i~~L~~isidRy~aI~~P~~~~  247 (387)
                      ++.-+++++||-+|-..|-.++
T Consensus       116 ~~~q~aL~idRl~at~~~~~~~  137 (328)
T PF02117_consen  116 IFIQFALTIDRLLATFFPKYYS  137 (328)
T ss_pred             HHHHHHHHHHHHHHHhchhhhh
Confidence            9999999999999998886554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.41  E-value=0.091  Score=48.82  Aligned_cols=57  Identities=12%  Similarity=0.123  Sum_probs=41.3

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHH
Q psy11830        210 GCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASI  267 (387)
Q Consensus       210 ~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~  267 (387)
                      ..++..++......+-..+...+|++|+-++..|.++.+ -++ .....++++.++++.
T Consensus        80 ~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~-~~~~~i~~i~~~p~~  137 (275)
T PF02118_consen   80 FLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKR-YYWIIIIIIFLLPFS  137 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHh-hhhhheeeeeehhHH
Confidence            456666777778888889999999999999999999988 443 333344444444443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.38  E-value=0.029  Score=53.21  Aligned_cols=111  Identities=8%  Similarity=0.064  Sum_probs=68.7

Q ss_pred             hcccceeeeeeeccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeecc--ccCcccC-ccchhhhHHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSEKS-VPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNY--AYDWQKG-YGCKVAGFVTVFAS  222 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l~t-~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~--~~~w~~g-~~C~~~~~~~~~~~  222 (387)
                      +.|.+.+..+.++.+.+. .-.+++...|+.|+..++.-....-.-...++.....  .+.+..+ ...+....+...+.
T Consensus        14 ~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~f   93 (307)
T PF10326_consen   14 FLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQILLAIYCGCF   93 (307)
T ss_pred             HHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeehhhhhhhhH
Confidence            889888888765444333 3346677788889888876443322222222222222  2333334 45566666667777


Q ss_pred             HHHHHHHHHHHHHHHhheeccccccccccchhhhh
Q psy11830        223 QLSIFTLGMITLERWYSIKRALYANKLTIHRTTYF  257 (387)
Q Consensus       223 ~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~  257 (387)
                      ..+...++.-=+.||.++++|.+-+..+.++....
T Consensus        94 ~~~~~llaihFiYRY~av~~~~~l~~f~~~~~~~w  128 (307)
T PF10326_consen   94 GMSFSLLAIHFIYRYWAVCRPKKLRYFSGWRFIIW  128 (307)
T ss_pred             HHHHHHHHhHhhhheeeeccchhhccccccceeee
Confidence            77888888899999999999987655443444333

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.29  E-value=0.026  Score=28.90  Aligned_cols=15  Identities=13%  Similarity=0.231  Sum_probs=5.9

Q ss_pred             ceeEEEecCCcceee
Q psy11830         31 VMEVIFLGYNNIKII   45 (387)
Q Consensus        31 ~~~~l~l~~n~i~~~   45 (387)
                      +|+.|+|++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            345555555555443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.83  E-value=0.027  Score=32.18  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=20.1

Q ss_pred             cceeeEEEccCccccCCCCCcc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVS   27 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~   27 (387)
                      .+|..|++++|+|+.||+..|+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4789999999999999999886

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.83  E-value=0.027  Score=32.18  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=20.1

Q ss_pred             cceeeEEEccCccccCCCCCcc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVS   27 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~   27 (387)
                      .+|..|++++|+|+.||+..|+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4789999999999999999886

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.70  E-value=0.038  Score=28.25  Aligned_cols=16  Identities=19%  Similarity=0.465  Sum_probs=11.3

Q ss_pred             ceeeEEEccCccccCC
Q psy11830          7 SLLDMKIVRTGLNHIP   22 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~   22 (387)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            6899999999999987

...

>KOG0444|consensus

Probab=93.43  E-value=0.032  Score=56.71  Aligned_cols=47  Identities=23%  Similarity=0.256  Sum_probs=40.9

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +.|+.|||++|++++.|++.= .-.++-+|+||+|+|..||...|-.+
T Consensus       103 ~dLt~lDLShNqL~EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinL  149 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLREVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINL  149 (1255)
T ss_pred             ccceeeecchhhhhhcchhhh-hhcCcEEEEcccCccccCCchHHHhh
Confidence            468899999999999997643 55789999999999999999999776

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=93.22  E-value=0.035  Score=61.19  Aligned_cols=43  Identities=16%  Similarity=0.086  Sum_probs=16.9

Q ss_pred             eeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccc
Q psy11830          8 LLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAF   50 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f   50 (387)
                      |.+|++++|++.......+.++++|+.|+|++|.++...+..|
T Consensus       501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  543 (968)
T PLN00113        501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF  543 (968)
T ss_pred             cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhH
Confidence            3333344443333333333334444444444444444433333

>KOG0618|consensus

Probab=93.12  E-value=0.02  Score=60.52  Aligned_cols=46  Identities=15%  Similarity=0.139  Sum_probs=42.9

Q ss_pred             cccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecccc
Q psy11830          4 YANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRA   49 (387)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~   49 (387)
                      +|.+|+.|.|.+|+++.+|...+.++..||+|+||+|+++.++...
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv  426 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTV  426 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHH
Confidence            5789999999999999999999999999999999999999999543

>KOG1644|consensus

Probab=93.04  E-value=0.058  Score=47.41  Aligned_cols=83  Identities=11%  Similarity=0.136  Sum_probs=51.1

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC--CCCCCCchhhhH
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP--RPSAYNTYYNFT   82 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~l   82 (387)
                      -+..-.+|+.+|.|..++  -|..++.|..|+|++|+|+.|++....-.  .+++.+...+.+...  .-|+.-.|-..-
T Consensus        41 ~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~--p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFL--PNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhc--cccceEEecCcchhhhhhcchhccCCccc
Confidence            346678899999988886  45678899999999999999998765333  333443322222111  223333333333


Q ss_pred             HhhhccCee
Q psy11830         83 RLIFPGNAA   91 (387)
Q Consensus        83 ~~~~~gn~~   91 (387)
                      .+.++||-.
T Consensus       117 ~Ltll~Npv  125 (233)
T KOG1644|consen  117 YLTLLGNPV  125 (233)
T ss_pred             eeeecCCch
Confidence            345677765

>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.99  E-value=0.12  Score=43.54  Aligned_cols=72  Identities=17%  Similarity=0.237  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhee-------cccCCceeeecc
Q psy11830        217 VTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGI-------SSYSTTSICLPM  288 (387)
Q Consensus       217 ~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~-------~~~~~~~~C~~~  288 (387)
                      +..++.....+.-..|+++|-..|.+|.+... .|.+|....+.++.+..+..-+.|.+..       .+....+.|.|.
T Consensus        50 ~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S~C~vnf~~~~~~f~s~Cap~  129 (153)
T PF03383_consen   50 FGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFSDCYVNFDARTFSFVSACAPD  129 (153)
T ss_pred             eehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCCCCcEEEEeeeeEEEEccCCC
Confidence            34555666678888999999999999999987 9999999999988888888777888731       122235568764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=92.68  E-value=0.079  Score=58.47  Aligned_cols=48  Identities=13%  Similarity=0.094  Sum_probs=42.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|++....+..|.++++|+.|||++|+++..-+..+.++
T Consensus       523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  570 (968)
T PLN00113        523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV  570 (968)
T ss_pred             cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence            578999999999999888999999999999999999998777777554

>PLN03150 hypothetical protein; Provisional

Probab=92.57  E-value=0.069  Score=55.93  Aligned_cols=46  Identities=15%  Similarity=0.063  Sum_probs=31.5

Q ss_pred             eeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          8 LLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +..|+|++|++.......++.+.+|+.|+|++|+++..-+..+..+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l  465 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI  465 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence            6677777777775555567777777777777777776555555554

>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.42  E-value=0.88  Score=43.17  Aligned_cols=111  Identities=17%  Similarity=0.178  Sum_probs=72.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhheecccCCceeeeccC--
Q psy11830        212 KVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSICLPMD--  289 (387)
Q Consensus       212 ~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~~~~C~~~~--  289 (387)
                      ++..++.....+.|.+.-...++-|-+-+..|.++++..++-....+.++.+.+++.+. |.+     ...+.|.+..  
T Consensus       104 k~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f-~~~-----pa~G~C~Ql~~P  177 (307)
T PF10322_consen  104 KILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTF-PMF-----PALGYCRQLDPP  177 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHH-Hcc-----CCcEEEEeCCCC
Confidence            56667778888999999999999999999999988665555556666666666666663 322     2344454221  


Q ss_pred             ----------cCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11830        290 ----------TRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVL  328 (387)
Q Consensus       290 ----------~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~  328 (387)
                                .....+.............-.+.+++.+..+++++|+.+
T Consensus       178 f~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k  226 (307)
T PF10322_consen  178 FPFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK  226 (307)
T ss_pred             CCCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      112222222333333345566777888899999999876

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.40  E-value=0.12  Score=41.83  Aligned_cols=45  Identities=20%  Similarity=0.238  Sum_probs=30.6

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|.++.+.+ ++..|++..|.+..+|+.+++.+| ++.++..+|.+.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~   57 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNC   57 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecc
Confidence            688888874 788999999999988999998775 999999999887

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=91.30  E-value=3.8  Score=38.86  Aligned_cols=180  Identities=12%  Similarity=0.119  Sum_probs=92.8

Q ss_pred             hcccceeeeeee-ccCCCchhHHHH---HHHHHHHHHHHHHHHHHHHHHhhccceeeccc-cCcccCccchhhhHHHHHH
Q psy11830        147 KGNAAVLAVTLS-RTSEKSVPRFLI---SHLAMADLCMAFYLLLLAIKDLQSTEVYFNYA-YDWQKGYGCKVAGFVTVFA  221 (387)
Q Consensus       147 ~gN~lvi~vi~~-~~~l~t~~~~~i---~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~-~~w~~g~~C~~~~~~~~~~  221 (387)
                      +-|.+.++.+.. .+++.+-.++++   ....++|+-.+...-|.......  |.|...- .+| +|..+.....+..+.
T Consensus        24 ~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~--agy~~G~l~~~-f~i~~h~~~~i~~~l  100 (303)
T PF10327_consen   24 ILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIP--AGYCVGFLARY-FGISSHYLMTIWIFL  100 (303)
T ss_pred             HHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhccee--EEEEEeehhhc-CCCchHHHHHHHHHH
Confidence            888888877665 444444333322   55678999999888887775543  2122210 111 222333333444444


Q ss_pred             HHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhh--eecccC-------CceeeeccC---
Q psy11830        222 SQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMF--GISSYS-------TTSICLPMD---  289 (387)
Q Consensus       222 ~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~--~~~~~~-------~~~~C~~~~---  289 (387)
                      ...-.-.++.--+-|+-+|.+..+.++.++..-...........+..+ ..+.  +.++.+       +...|.+..   
T Consensus       101 ~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~~~~~~~~~~~~~~p~~~~-~~~~~~~~s~eeq~~yI~~nyP~~~~~F~~l  179 (303)
T PF10327_consen  101 FIFQIESLVICFLRKHQAIARILSKHVLPKWFYIFFYFFCILFPFFIF-ICFYFSGMSREEQMEYIRENYPEYLSWFSSL  179 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCcCcHHHHHHHhhHHHHHHHHHH-HHHHhcCCCHHHHHHHHHhhCCchhHHHhcC
Confidence            445556666667889999999887765444433333333343333333 2221  211110       111232211   


Q ss_pred             ------cCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830        290 ------TRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTA  330 (387)
Q Consensus       290 ------~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~  330 (387)
                            +.+...........+....-..+..+++.++++.+++.+++
T Consensus       180 ~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~  226 (303)
T PF10327_consen  180 PNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKK  226 (303)
T ss_pred             CCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  11111111112223334566777888899999988776664

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>KOG0617|consensus

Probab=91.29  E-value=0.033  Score=47.71  Aligned_cols=68  Identities=16%  Similarity=0.181  Sum_probs=47.9

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccCCCCCCCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNT   77 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~   77 (387)
                      ...+.|.+++|++..+|.+. +++.+|+.|+|.+|+|..++.+.= ++  .+++.+...-.+.+-.|..|-+
T Consensus        33 s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~is-sl--~klr~lnvgmnrl~~lprgfgs  100 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSIS-SL--PKLRILNVGMNRLNILPRGFGS  100 (264)
T ss_pred             hhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhh-hc--hhhhheecchhhhhcCccccCC
Confidence            45788999999999999887 589999999999999999987643 22  3333333332333334555443

>KOG4579|consensus

Probab=91.01  E-value=0.042  Score=45.38  Aligned_cols=47  Identities=13%  Similarity=0.157  Sum_probs=36.9

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      ..|+..++++|.++..|+..-.-.+..+.++|++|+|+.+|.+ +...
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam   99 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAM   99 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-Hhhh
Confidence            3577788899999988876655556888889999999988888 6554

>KOG4579|consensus

Probab=90.95  E-value=0.026  Score=46.60  Aligned_cols=72  Identities=8%  Similarity=0.078  Sum_probs=55.1

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCchhhhH
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNTYYNFT   82 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~l   82 (387)
                      .++.|.+++|.|..+|+. ++.++.|+-++++.|.+...+.-.+. +  .++..+..++..-.| ..|.|.+....+
T Consensus        78 t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~-L--~~l~~Lds~~na~~eid~dl~~s~~~al  150 (177)
T KOG4579|consen   78 TATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAP-L--IKLDMLDSPENARAEIDVDLFYSSLPAL  150 (177)
T ss_pred             hhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHH-H--HhHHHhcCCCCccccCcHHHhccccHHH
Confidence            567899999999999998 99999999999999999988776664 4  566666555554444 556666655443

>KOG4193|consensus

Probab=90.78  E-value=0.96  Score=46.97  Aligned_cols=144  Identities=13%  Similarity=0.112  Sum_probs=84.7

Q ss_pred             eeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC--c-cchhhhHHHHHHHHHHHHHH
Q psy11830        153 LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG--Y-GCKVAGFVTVFASQLSIFTL  229 (387)
Q Consensus       153 i~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g--~-~C~~~~~~~~~~~~~Si~~L  229 (387)
                      +++...-|++++..+....||+++ ++++-.....               +.|..+  . .|+...++..++..+..+-+
T Consensus       341 i~ty~~~~~l~~~~~~i~~~l~~~-L~l~~l~fL~---------------~~~~~~~~~~~C~~~a~llhff~LaaF~Wm  404 (610)
T KOG4193|consen  341 IATYLLFRKLQNDRTKIHINLCLC-LFLAELLFLL---------------GIDRTSTSVVLCIAAAILLHFFFLAAFFWM  404 (610)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHH-HHHHHHHHhc---------------ccccccCcccccHHHHHHHHHHHHHHHHHH
Confidence            334444455544446777788777 2222221111               134444  3 69999999999999999999


Q ss_pred             HHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhe-ecc---cCCceeeeccCcCcccchhhhHHHHHH
Q psy11830        230 GMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFG-ISS---YSTTSICLPMDTRHLGSKIYVHTLLLF  305 (387)
Q Consensus       230 ~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~-~~~---~~~~~~C~~~~~~~~~~~~~~~~~~~~  305 (387)
                      ..+++.=|..++.-.+.  ..+++........|...+++..+-... ...   |.....|+...+......         
T Consensus       405 ~leg~hl~~~~v~vf~~--~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~~---------  473 (610)
T KOG4193|consen  405 LLEGFHLYLLLVEVFRS--RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIWS---------  473 (610)
T ss_pred             HHHHHHHHHHHHHHhcc--ccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEEE---------
Confidence            99999988865544432  234444445468998877666444432 222   445566875433322211         


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy11830        306 SSLVFAMICVCYFQIYSS  323 (387)
Q Consensus       306 ~~iPl~ii~~~Y~~I~~~  323 (387)
                      |+.|+.+++.+++.++..
T Consensus       474 F~GPv~~ii~~Ni~~Fv~  491 (610)
T KOG4193|consen  474 FLGPVTLIILVNIVMFVV  491 (610)
T ss_pred             EehHHHHHHHHHHHHHHH
Confidence            566777777777655533

>KOG1259|consensus

Probab=90.51  E-value=0.1  Score=48.64  Aligned_cols=46  Identities=13%  Similarity=0.140  Sum_probs=39.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccC
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNG   52 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~   52 (387)
                      +.|+++|+++|.|+.|.|.. .-+++++.|+||.|.|+.++..+|..
T Consensus       284 q~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~nLa~L~  329 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQNLAELP  329 (490)
T ss_pred             hhhhhccccccchhhhhhhh-hhccceeEEeccccceeeehhhhhcc
Confidence            46899999999999997654 47789999999999999999977743

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.50  E-value=0.28  Score=39.58  Aligned_cols=46  Identities=28%  Similarity=0.303  Sum_probs=34.1

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|.++++.++ ++.|++..|.+.++++.+.+++ .+..+++..|...
T Consensus        35 ~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen   35 TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             ccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            36889999774 9999999999998999999975 8999999999865

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=90.21  E-value=0.54  Score=41.27  Aligned_cols=39  Identities=8%  Similarity=0.049  Sum_probs=29.2

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheecccccc
Q psy11830        209 YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYAN  247 (387)
Q Consensus       209 ~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~  247 (387)
                      ..|.+..-+........-...+++|++||+-|+.-.|..
T Consensus       115 ~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl~  153 (226)
T PF06681_consen  115 FVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRLS  153 (226)
T ss_pred             EeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccCC
Confidence            679998876666665555666689999999999765543

The function of this family is unknown.

>PLN03150 hypothetical protein; Provisional

Probab=90.06  E-value=0.14  Score=53.62  Aligned_cols=54  Identities=11%  Similarity=0.079  Sum_probs=43.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|+.|++++|++...-+..++.+.+|+.|||++|+++...+..+..+  .+|+.+
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L--~~L~~L  495 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL--TSLRIL  495 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC--CCCCEE
Confidence            578999999999985445568999999999999999998877777665  444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=89.91  E-value=0.17  Score=32.99  Aligned_cols=29  Identities=14%  Similarity=0.104  Sum_probs=19.8

Q ss_pred             cceeEEEecCCcceeeccccccCccccccccc
Q psy11830         30 LVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus        30 ~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      ++|+.|+|++|+|+.+++ .+..+  .+++.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~-~l~~l--~~L~~L   29 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-ELSNL--PNLETL   29 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-HGTTC--TTSSEE
T ss_pred             CcceEEEccCCCCcccCc-hHhCC--CCCCEE
Confidence            479999999999999988 35454  444443

...

>KOG1259|consensus

Probab=89.63  E-value=0.16  Score=47.36  Aligned_cols=42  Identities=12%  Similarity=0.133  Sum_probs=36.3

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR   48 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~   48 (387)
                      +-.++.|++++|+|..+..  .+.+.+|++||||+|.++.++.-
T Consensus       306 ~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gw  347 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGW  347 (490)
T ss_pred             ccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhh
Confidence            3468899999999999976  66789999999999999988764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=89.12  E-value=0.28  Score=52.29  Aligned_cols=40  Identities=10%  Similarity=0.208  Sum_probs=24.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR   48 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~   48 (387)
                      .+|+.|++++|+|+.+|+..+   .+|+.|+|++|+++.++..
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~  238 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPAT  238 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChh
Confidence            456667777777777766554   2556666666666665543

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=88.71  E-value=4.3  Score=37.51  Aligned_cols=170  Identities=12%  Similarity=0.106  Sum_probs=96.6

Q ss_pred             hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHH----HHHHHHhhccceeeccccCcccCccchhhhHHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLL----LLAIKDLQSTEVYFNYAYDWQKGYGCKVAGFVTVFAS  222 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~----~~~~~~~~~~~~~~~~~~~w~~g~~C~~~~~~~~~~~  222 (387)
                      .|-.+|+.++..+.=.+-+--.|+..|..+-.+......    |-...+....        +..-+..-.+..+....+.
T Consensus        30 t~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~--------~~~~s~~f~~~Sy~idf~h  101 (305)
T PF04789_consen   30 TGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITK--------EFVQSELFIFMSYLIDFCH  101 (305)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhH--------HHhccchhhHHHHHHHHHH
Confidence            333444444433333345567899999999888776543    3333222211        1111123345566777888


Q ss_pred             HHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhe-----ecc--cCCceeeecc---CcC
Q psy11830        223 QLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFG-----ISS--YSTTSICLPM---DTR  291 (387)
Q Consensus       223 ~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~-----~~~--~~~~~~C~~~---~~~  291 (387)
                      ++-.++=..+|+.|....-.-....+ ..+.-..+....+|++++.........     ++.  .+..-.|...   ...
T Consensus       102 ~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~  181 (305)
T PF04789_consen  102 YSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDI  181 (305)
T ss_pred             HHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEee
Confidence            88889999999999987764433334 667778888899999988765322221     111  1123356432   111


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11830        292 HLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLG  325 (387)
Q Consensus       292 ~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr  325 (387)
                      ++....-.+-..+-+.+|..+ ...|+.+..++-
T Consensus       182 ~~P~~IqiiE~ilQ~~IPi~I-l~iYiAIIiKI~  214 (305)
T PF04789_consen  182 SPPRGIQIIEIILQFGIPIFI-LVIYIAIIIKII  214 (305)
T ss_pred             CCCCchhHHHHHHHHhHHHHH-HHHHHHHHHHHH
Confidence            222333345556667888665 455766665543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=88.49  E-value=0.42  Score=51.00  Aligned_cols=39  Identities=15%  Similarity=0.139  Sum_probs=19.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      ++|.+|++++|+++.||...+   .+|+.|+|++|+++.+|+
T Consensus       220 ~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~  258 (754)
T PRK15370        220 GNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPE  258 (754)
T ss_pred             cCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCCh
Confidence            355666666666666654322   234444444444444433

>PHA03234 DNA packaging protein UL33; Provisional

Probab=88.14  E-value=0.16  Score=49.04  Aligned_cols=44  Identities=18%  Similarity=0.361  Sum_probs=33.3

Q ss_pred             hhhccCeeEEEeee--ccCCCCCcchhhhhhhhHHHHHHHHHHHHH
Q psy11830         84 LIFPGNAAVLAVTL--SRTSEKSVPRFLISHLAMADLCMAFYLLLL  127 (387)
Q Consensus        84 ~~~~gn~~~~~~~~--~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii  127 (387)
                      +.+.||.+|+.+..  .++..++....++.|||+||+++++.+...
T Consensus        45 ~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~   90 (338)
T PHA03234         45 LIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFL   90 (338)
T ss_pred             HHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999998543  333445778899999999999988765443

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=87.62  E-value=13  Score=33.66  Aligned_cols=40  Identities=18%  Similarity=0.138  Sum_probs=34.4

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc
Q psy11830        209 YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK  248 (387)
Q Consensus       209 ~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~  248 (387)
                      ..||.......+....+.+.-..+++||++|....-+|.+
T Consensus        83 ~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~  122 (236)
T PF02175_consen   83 TLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYEN  122 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence            4466677777888889999999999999999999888876

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=87.59  E-value=0.31  Score=52.07  Aligned_cols=42  Identities=12%  Similarity=0.267  Sum_probs=24.9

Q ss_pred             cceeeEEEccCccccCCCCCc----------------ccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPV----------------SNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|.+|++++|+|+.+|+..-                ....+|+.|+|++|+|+.++.
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~  399 (788)
T PRK15387        342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV  399 (788)
T ss_pred             cccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCC
Confidence            366777777777776664331                011356667777777766654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=85.55  E-value=0.64  Score=49.70  Aligned_cols=38  Identities=11%  Similarity=0.190  Sum_probs=25.9

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|..|++.+|+|+.||+.    .++|+.|+|++|+|+.+++
T Consensus       222 ~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~  259 (788)
T PRK15387        222 AHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPV  259 (788)
T ss_pred             cCCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccC
Confidence            4566777777777777643    4567777777777777753

>KOG0472|consensus

Probab=85.49  E-value=0.082  Score=51.13  Aligned_cols=42  Identities=17%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAF   50 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f   50 (387)
                      +|..|++.+|+|.++|  .|.+...|.+++++.|+|+.+|+..-
T Consensus       207 ~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~  248 (565)
T KOG0472|consen  207 SLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHL  248 (565)
T ss_pred             hhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHh
Confidence            3444445555555554  33444444444444444444444433

>KOG0531|consensus

Probab=84.70  E-value=0.45  Score=47.21  Aligned_cols=46  Identities=22%  Similarity=0.341  Sum_probs=37.6

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccC
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNG   52 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~   52 (387)
                      .+|..|++.+|+|+.|... ...+++|+.|+|+.|.|+.+++.+...
T Consensus        95 ~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~~l~  140 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEGLSTLT  140 (414)
T ss_pred             cceeeeeccccchhhcccc-hhhhhcchheeccccccccccchhhcc
Confidence            5788899999999998643 567889999999999999888876644

>KOG4220|consensus

Probab=83.01  E-value=0.68  Score=45.03  Aligned_cols=41  Identities=22%  Similarity=0.294  Sum_probs=35.3

Q ss_pred             hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830         84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL  124 (387)
Q Consensus        84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~  124 (387)
                      +.+.||++|.+.....++-.+|..+.+.+||+||++.|++.
T Consensus        43 VTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~S   83 (503)
T KOG4220|consen   43 VTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFS   83 (503)
T ss_pred             HhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheee
Confidence            46899999998877777778899999999999999988664

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=82.38  E-value=6.6  Score=39.06  Aligned_cols=40  Identities=28%  Similarity=0.418  Sum_probs=30.5

Q ss_pred             hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830         84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL  124 (387)
Q Consensus        84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~  124 (387)
                      ++++||.+|+....+ ++.++...+.+.|||++|++..+-+
T Consensus       111 lgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l~l  150 (417)
T PHA02638        111 LGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVIDF  150 (417)
T ss_pred             HHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHHHH
Confidence            368999999866443 5556678899999999998765433

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.06  E-value=0.87  Score=26.03  Aligned_cols=18  Identities=22%  Similarity=0.569  Sum_probs=11.8

Q ss_pred             ceeeEEEccCccccCCCC
Q psy11830          7 SLLDMKIVRTGLNHIPQF   24 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~   24 (387)
                      +|.+|..++|++..+|+.
T Consensus         3 ~L~~L~vs~N~Lt~LPeL   20 (26)
T smart00364        3 SLKELNVSNNQLTSLPEL   20 (26)
T ss_pred             ccceeecCCCccccCccc
Confidence            566666677777666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	387
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		2e-05
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		2e-05

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 204 DWQKGYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGY 262
            W  G+  CKV GF+      +SI T+ MI+++R+  I R + A+K   HR  + +++  
Sbjct: 99  KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFV 158
Query: 263 VYASIMGAL-PMFGISSYSTTSI-C-LPMDTRHLGSKIYVHTLLLFSSLVFAMICV---C 316
              S++ A+ P+FG  +Y+   + C    D     S    + L +F    F  I +   C
Sbjct: 159 WLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFC 218
Query: 317 YFQIYSSLGN 326
           YF I  S+ N
Sbjct: 219 YFNIVMSVSN 228

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 204 DWQKGYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGY 262
            W  G+  CKV GF+      +SI T+ MI+++R+  I R + A+K   HR  + +++  
Sbjct: 100 KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFV 159
Query: 263 VYASIMGAL-PMFGISSYSTTSI-C-LPMDTRHLGSKIYVHTLLLFSSLVFAMICV---C 316
              S++ A+ P+FG  +Y+   + C    D     S    + L +F    F  I +   C
Sbjct: 160 WLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFC 219
Query: 317 YFQIYSSLGN 326
           YF I  S+ N
Sbjct: 220 YFNIVMSVSN 229

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	387
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	7e-19
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-17
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	5e-13
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	1e-11
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	1e-11
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	1e-10
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	6e-10
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	1e-09
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	1e-09
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	7e-09
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	7e-09
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	1e-07
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	3e-07
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	5e-07
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	1e-06

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 85.9 bits (213), Expect = 7e-19
 Identities = 33/185 (17%), Positives = 75/185 (40%), Gaps = 16/185 (8%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
            N   L VT+     ++   +++ +LA+ADL M F      +        Y +    +  
Sbjct: 55  INFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--------YTSLHGYFVF 106

Query: 208 GY-GCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYAS 266
           G  GC + GF      ++++++L ++ +ER+  + + +   +   +     +   +V A 
Sbjct: 107 GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMAL 166

Query: 267 IMGALPMFGISSYS------TTSICLPMDTRHLGSKIYVHTLLLFSSLV-FAMICVCYFQ 319
              A P+ G S Y       +  I          ++ +V  + +   ++   +I  CY Q
Sbjct: 167 ACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQ 226

Query: 320 IYSSL 324
           +  ++
Sbjct: 227 LVFTV 231

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 83.4 bits (206), Expect = 1e-17
 Identities = 38/184 (20%), Positives = 75/184 (40%), Gaps = 14/184 (7%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  V+ +     S ++     I +LA +D   +                   +   W  
Sbjct: 51  GNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF-------PLMTISCFLKKWIF 103

Query: 208 GY-GCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYA 265
           G+  CKV GF+      +SI T+ MI+++R+  I R + A+K ++  R    I+  ++++
Sbjct: 104 GFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWS 163

Query: 266 SIMGALPMFGISSY----STTSICLPMDTRHLGSKIYVHTLLLFSSLV-FAMICVCYFQI 320
            +    P+FG  +Y       +      +R   ++  +  + +        +I  CYF I
Sbjct: 164 VLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNI 223

Query: 321 YSSL 324
             S+
Sbjct: 224 VMSV 227

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 69.1 bits (168), Expect = 5e-13
 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 20/177 (11%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
            N  VL              + I +LA++DL                  +          
Sbjct: 80  ENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANL--------LLSGATTYKLT 131

Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASI 267
                +       A   S+F+L  I +ER+ ++ +    N     R    I   +V + I
Sbjct: 132 PAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLI 191

Query: 268 MGALPMFG---ISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIY 321
           +G LP+ G   IS+ S+ S  LP+       K Y+    LF + VF ++ +    +Y
Sbjct: 192 LGGLPIMGWNCISALSSCSTVLPLY-----HKHYI----LFCTTVFTLLLLSIVILY 239

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 19/180 (10%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  V+ V   +   +S+      HL++ADL     L   A+          +   +W  
Sbjct: 65  GNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV----------DAVANWYF 114

Query: 208 GYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYAS 266
           G   CK    +       S++ L  I+L+R+ +I  A  + +         + VG    +
Sbjct: 115 GNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPA 174

Query: 267 IMGALPMF---GISSYSTTSICL---PMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQI 320
           ++  +P F    +S      IC    P D   +  +     + L    +   I  CY  I
Sbjct: 175 LLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIV--ILSCYCII 232

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 61.7 bits (149), Expect = 1e-10
 Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 25/189 (13%)

Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
           GN  V  AV L+  + ++V  + +  LA AD+ +    +  AI    ST           
Sbjct: 38  GNVLVCWAVWLNS-NLQNVTNYFVVSLAAADIAVGVLAIPFAI--TISTGFCAACHG--- 91

Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
               C       +  +Q SIF+L  I ++R+ +I+  L Y   +T  R    I + +V +
Sbjct: 92  ----CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 147

Query: 266 SIMGALPMFGISSYSTTSICLPMDTRHLGSK--------IYVHTLLLFSSLV-----FAM 312
             +G  PM G ++                 +        + ++ ++ F+          +
Sbjct: 148 FAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLL 207

Query: 313 ICVCYFQIY 321
           +   Y +I+
Sbjct: 208 MLGVYLRIF 216

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 59.4 bits (143), Expect = 6e-10
 Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 29/185 (15%)

Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
           GN  V +AV   R + ++   +L+  LA+ADL +A  ++   +      EV       W 
Sbjct: 55  GNGLVCMAVLKER-ALQTTTNYLVVSLAVADLLVATLVMPWVV----YLEVTGGV---WN 106

Query: 207 KGYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL----YANKLTIHRTTYFILVG 261
                C V   + V     SI+ L  I+++R+ ++   +       + +  R    I   
Sbjct: 107 FSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAV 166

Query: 262 YVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-----FAMICVC 316
           +V A  +    +FG ++    ++C       + +  +V    ++SS+V     F +  + 
Sbjct: 167 WVLAFAVSCPLLFGFNTTGDPTVCS------ISNPDFV----IYSSVVSFYLPFGVTVLV 216

Query: 317 YFQIY 321
           Y +IY
Sbjct: 217 YARIY 221

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 36/185 (19%), Positives = 76/185 (41%), Gaps = 18/185 (9%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  V+ + L+    ++V  + + +LA A+  MA +  ++           +    +W  
Sbjct: 49  GNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVV--------NFTYAVHNEWYY 100

Query: 208 G-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYAS 266
           G + CK   F  + A   SI+++  +  +R+ +I   L   +L+   T   I V +V A 
Sbjct: 101 GLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQP-RLSATATKVVICVIWVLAL 159

Query: 267 IMGALPMF---GISSYSTTSICL---PMDTRHLGSKIYVHTLLLFSSLV-FAMICVCYFQ 319
           ++ A P        +  +  +C+   P     +  K+Y   + +    +   +I   Y  
Sbjct: 160 LL-AFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTV 218

Query: 320 IYSSL 324
           +  +L
Sbjct: 219 VGITL 223

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 37/182 (20%), Positives = 60/182 (32%), Gaps = 20/182 (10%)

Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
           GN  V+ V +  T  K+     I +LA+AD      L   +                W  
Sbjct: 34  GNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQS---------VNYLMGTWPF 84

Query: 208 GYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYAS 266
           G   CK+   +  +    SIFTL  ++++R+ ++   + A      R    + V     S
Sbjct: 85  GNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILS 144

Query: 267 IMGALPMF---GISSYSTTSICL-----PMDTRHLGSKIYVHTLLLFSSLVFAMICVCYF 318
               LP+           +  C      P        KI V        +   +I VCY 
Sbjct: 145 SAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFI--MPVLIITVCYG 202

Query: 319 QI 320
            +
Sbjct: 203 LM 204

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 56.2 bits (135), Expect = 7e-09
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
           GN  V  AV L+  + ++V  + +  LA AD+ +    +  AI    +    F  A    
Sbjct: 48  GNVLVCWAVWLNS-NLQNVTNYFVVSLAAADIAVGVLAIPFAI----TISTGFCAACHG- 101

Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
               C       +  +Q SIF+L  I ++R+ +I+  L Y   +T  R    I + +V +
Sbjct: 102 ----CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 157

Query: 266 SIMGALPMFG--------ISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-----FAM 312
             +G  PM G             +               + ++ ++ F+          +
Sbjct: 158 FAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLL 217

Query: 313 ICVCYFQIY 321
           +   Y +I+
Sbjct: 218 MLGVYLRIF 226

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 56.5 bits (136), Expect = 7e-09
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 34/191 (17%)

Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
           GN  V  A+       ++V  + I+ LA ADL M   ++      + +    F   +   
Sbjct: 199 GNVLVITAIAKFE-RLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFW--- 254

Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
               C+    + V     SI TL +I ++R+++I     Y + LT ++    IL+ ++ +
Sbjct: 255 ----CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 310

Query: 266 SIMGALPMF----------GISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-----F 310
            +   LP+            I+ Y+  + C         ++ Y     + SS+V      
Sbjct: 311 GLTSFLPIQMHWYRATHQEAINCYAEETCCDFFT-----NQAYA----IASSIVSFYVPL 361

Query: 311 AMICVCYFQIY 321
            ++   Y +++
Sbjct: 362 VIMVFVYSRVF 372

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 32/184 (17%), Positives = 68/184 (36%), Gaps = 23/184 (12%)

Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
           GN  V +++ ++R   ++V  + +  LA ADL +  + + L         +Y    Y W 
Sbjct: 40  GNILVMVSIKVNR-HLQTVNNYFLFSLACADLIIGVFSMNLYT-------LYTVIGY-WP 90

Query: 207 KGYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVY 264
            G   C +   +    S  S+  L +I+ +R++ + + L Y  K T       I   +V 
Sbjct: 91  LGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVL 150

Query: 265 ASIMGALPMFGISSYSTTSICLPMDT--RHLGSKIYVHTLLLFSSLV-----FAMICVCY 317
           + I+ A  +               +   +   +          +++        ++ V Y
Sbjct: 151 SFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVT----FGTAIAAFYLPVIIMTVLY 206

Query: 318 FQIY 321
           + I 
Sbjct: 207 WHIS 210

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 30/187 (16%), Positives = 68/187 (36%), Gaps = 26/187 (13%)

Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
           GN  V  A+  ++   +++    I+ LA ADL +   ++      +      +       
Sbjct: 28  GNVLVIAAIGSTQ-RLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFL--- 83

Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
               C++   + V     SI TL +I ++R+ +I     Y + +T  R    I   +  +
Sbjct: 84  ----CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAIS 139

Query: 266 SIMGALPMF----------GISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-FAMIC 314
           +++  LP+            +  Y     C  +      ++ Y     + S  +   ++ 
Sbjct: 140 ALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVT-----NRAYAIASSIISFYIPLLIMI 194

Query: 315 VCYFQIY 321
               ++Y
Sbjct: 195 FVALRVY 201

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 17/181 (9%)

Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
            N  V  AV   R    +V    I  L++ADL +   ++ + I  L  ++          
Sbjct: 25  LNLLVLYAVRSER-KLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPL--- 80

Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
               C     +   AS  SIF++ ++ ++R+ S+++ L Y    T  R +  IL  +  +
Sbjct: 81  ----CLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLS 136

Query: 266 SIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-----FAMICVCYFQI 320
            +   +P+ G + +   +     D         V    + ++++       ++   Y +I
Sbjct: 137 FLW-VIPILGWNHFMQQTSVRREDKCETDF-YDVTWFKVMTAIINFYLPTLLMLWFYAKI 194

Query: 321 Y 321
           Y
Sbjct: 195 Y 195

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 34/191 (17%)

Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
           GN  V  A+       ++V  + I+ LA ADL M   ++      +      F   +   
Sbjct: 57  GNVLVITAIAKFE-RLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFW--- 112

Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
               C+    + V     SI TL +I ++R+++I     Y + LT ++    IL+ ++ +
Sbjct: 113 ----CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 168

Query: 266 SIMGALPMF----------GISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-----F 310
            +   LP+            I+ Y+  + C         ++ Y     + SS+V      
Sbjct: 169 GLTSFLPIQMHWYRATHQEAINCYAEETCCDFFT-----NQAYA----IASSIVSFYVPL 219

Query: 311 AMICVCYFQIY 321
            ++   Y +++
Sbjct: 220 VIMVFVYSRVF 230

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.96
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.95
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.95
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.94
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.94
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.94
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.94
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.94
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.93
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.93
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.93
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.93
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.93
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.93
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.92
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.92
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.92
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.92
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.4
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.02
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.97
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.96
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.95
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.78
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.78
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.75
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.72
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.58
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.58
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.53
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.51
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.44
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.44
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.38
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.38
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.35
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.23
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.2
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.2
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.17
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.02
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.01
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	96.99
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	96.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	96.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	96.87
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	96.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	96.86
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.84
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	96.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	96.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	96.81
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	96.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	96.78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.74
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	96.73
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.7
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	96.61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	96.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.51
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.39
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.35
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	96.35
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.32
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	96.28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	96.25
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	96.16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	96.14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	96.08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	95.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	95.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	95.86
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	95.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	95.77
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	95.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	95.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	95.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	95.63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	95.61
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	95.49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	95.45
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	95.4
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	95.4
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	95.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.28
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	95.25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	95.24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	95.24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	95.18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	95.15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	95.1
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	95.08
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.07
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	94.96
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	94.85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	94.84
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	94.83
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	94.82
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	94.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	94.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	94.3
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	94.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	94.18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	94.05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	93.97
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.77
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	93.36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	93.22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	93.13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	93.11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	93.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.05
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	92.21
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	91.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	91.23
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.42
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	87.37
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	86.97
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	86.68
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	85.13
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	85.05
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	85.0
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	83.0
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	82.98
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	82.7
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	81.94
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	81.45
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	81.24
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	80.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	80.28

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.96  E-value=3.9e-30  Score=259.81  Aligned_cols=176  Identities=15%  Similarity=0.250  Sum_probs=146.1

Q ss_pred             hcccceeeeeeeccCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSE---KSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFAS  222 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l---~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~  222 (387)
                      +||++|++++.++|++   ++++|+|++|||+||++++++.+|..+.....      ..+.|.+| ..|++..++..++.
T Consensus        48 ~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~------~~~~w~~g~~~C~~~~~~~~~~~  121 (510)
T 4grv_A           48 VGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIW------VHHPWAFGDAGCRGYYFLRDACT  121 (510)
T ss_dssp             HHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT------CCSSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCEEhhHHHHHHHHHHHHHHH
Confidence            9999999999887655   47889999999999999999999988765432      23479999 89999999999999


Q ss_pred             HHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheecccC--------CceeeeccCcCcc
Q psy11830        223 QLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGISSYS--------TTSICLPMDTRHL  293 (387)
Q Consensus       223 ~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~--------~~~~C~~~~~~~~  293 (387)
                      .+|++++++||+|||+||++|++|++ .|++++..+++++|++++++++|+++.++...        ....|.+.++...
T Consensus       122 ~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  201 (510)
T 4grv_A          122 YATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDTAT  201 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGGGEEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCCccccccccccch
Confidence            99999999999999999999999999 99999999999999999999988887654211        2346776665544


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11830        294 GSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVL  328 (387)
Q Consensus       294 ~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~  328 (387)
                      ...++.+..++.+++|+++|+++|.+|+++++++.
T Consensus       202 ~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~  236 (510)
T 4grv_A          202 VKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMV  236 (510)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             hhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            44444445566679999999999999999998654

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.95  E-value=3.6e-28  Score=246.00  Aligned_cols=185  Identities=20%  Similarity=0.212  Sum_probs=155.1

Q ss_pred             HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830        118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV  197 (387)
Q Consensus       118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~  197 (387)
                      .+..+..++++++|+              +||++|++++.+++++|+++|+|+.|||+||++++++.+|..+..      
T Consensus        64 ~~~~~~~~~i~~~g~--------------~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~------  123 (520)
T 3v2y_A           64 KLTSVVFILICCFII--------------LENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS------  123 (520)
T ss_dssp             HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred             HHHHHHHHHHHHHHH--------------HHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc------
Confidence            445555566666776              999999999999999999999999999999999999998887644      


Q ss_pred             eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830        198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFG  275 (387)
Q Consensus       198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~  275 (387)
                         ....|.++ ..|++..++..++..+|++++++||+|||+||+ |++|+. .+++++..+++++|+++++++++|+++
T Consensus       124 ---~~~~~~~~~~~c~~~~~~~~~~~~~S~~~l~~isidRy~aI~-p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~  199 (520)
T 3v2y_A          124 ---GATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITML-KMKLHNGSNNFRLFLLISACWVISLILGGLPIMG  199 (520)
T ss_dssp             ---GGGGTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-------CCHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             ---cccceeeCccccchHHHHHHHHHHHHHHHHHHHHHHHhhEEe-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHe
Confidence               12368888 899999999999999999999999999999999 999999 999999999999999999999999999


Q ss_pred             ecccCCceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11830        276 ISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVL  328 (387)
Q Consensus       276 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~  328 (387)
                      ++.+.+...|...++  .....|.+..++.+++|+++|++||.+|++.+|+++
T Consensus       200 ~~~~~~~~~C~~~~~--~~~~~~~~~~~~~~~lPl~ii~~~Y~~I~~~l~~~~  250 (520)
T 3v2y_A          200 WNCISALSSCSTVLP--LYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRN  250 (520)
T ss_dssp             CBCTTCGGGBCSSST--TBBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccccCCCcccccCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            998877788976553  234556666666789999999999999999999876

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.95  E-value=6.4e-28  Score=240.62  Aligned_cols=192  Identities=18%  Similarity=0.191  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy11830        116 ADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQST  195 (387)
Q Consensus       116 ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~  195 (387)
                      .+.+.++.+.+++++|+              +||+++++++.+++++|+++|+|+.|||++|+++++..++.......  
T Consensus        19 ~~~~~~~~~~~i~~~~i--------------~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~--   82 (484)
T 3vw7_A           19 LTLFVPSVYTGVFVVSL--------------PLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFS--   82 (484)
T ss_dssp             HHTHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            34556666777777777              99999999999999999999999999999999998876665553322  


Q ss_pred             ceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhh
Q psy11830        196 EVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPM  273 (387)
Q Consensus       196 ~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~  273 (387)
                            ...|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|++++++++|++
T Consensus        83 ------~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~  156 (484)
T 3vw7_A           83 ------GSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLL  156 (484)
T ss_dssp             ------TSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------cCCcccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence                  3379999 9999999999999999999999999999999999999998 9999999999999999999998888


Q ss_pred             heeccc----CCceeeeccCcCcccchh---hhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830        274 FGISSY----STTSICLPMDTRHLGSKI---YVH-TLLLFSSLVFAMICVCYFQIYSSLGNVLT  329 (387)
Q Consensus       274 ~~~~~~----~~~~~C~~~~~~~~~~~~---~~~-~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~  329 (387)
                      +.+..+    .....|...+........   |.. ..++.+++|+++++++|++|++.++++.+
T Consensus       157 ~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~  220 (484)
T 3vw7_A          157 LKEQTIQVPGLGITTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSAN  220 (484)
T ss_dssp             TSCCEEEETTTTEEEESSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HhhhccccCCCCCceeeccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhH
Confidence            766542    234679766554433322   332 33556799999999999999999998775

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.94  E-value=1.8e-27  Score=236.21  Aligned_cols=188  Identities=16%  Similarity=0.197  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830        118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV  197 (387)
Q Consensus       118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~  197 (387)
                      .+..+.+.++++.|+              +||+++++++.+++++|+++|+++.|||++|++++++.+|..+.....   
T Consensus        24 ~~~~~~~~~~~~~g~--------------~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~---   86 (467)
T 3uon_A           24 VFIVLVAGSLSLVTI--------------IGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVI---   86 (467)
T ss_dssp             HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHHHHHH--------------HHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            456666677777787              999999999999999999999999999999999999998887765443   


Q ss_pred             eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830        198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFG  275 (387)
Q Consensus       198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~  275 (387)
                           +.|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|++++++++|++++
T Consensus        87 -----~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~  161 (467)
T 3uon_A           87 -----GYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILF  161 (467)
T ss_dssp             -----SSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CCccCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 369999 8999999999999999999999999999999999999999 999999999999999999999888776


Q ss_pred             eccc-----CCceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830        276 ISSY-----STTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLT  329 (387)
Q Consensus       276 ~~~~-----~~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~  329 (387)
                      +..+     .....|...+...  ..+.....++.+++|+++++++|.+|++.+|++.+
T Consensus       162 ~~~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~  218 (467)
T 3uon_A          162 WQFIVGVRTVEDGECYIQFFSN--AAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRIN  218 (467)
T ss_dssp             HHHHHSCCCCCSSCCCCGGGGS--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             hhhcccccCCCCCcceeecCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5432     2344576443322  22233344556699999999999999999998765

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.94  E-value=1.3e-27  Score=240.50  Aligned_cols=191  Identities=18%  Similarity=0.325  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830        118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV  197 (387)
Q Consensus       118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~  197 (387)
                      ...++.+.+++++|+              +||+++++++.+++++|+++|+|+.|||++|++++++.+|..+.....   
T Consensus        41 ~~~~~~~~~i~~~gi--------------~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~---  103 (500)
T 2rh1_A           41 VGMGIVMSLIVLAIV--------------FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---  103 (500)
T ss_dssp             HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHH--------------HHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            345556666677776              999999999999999999999999999999999999988887755442   


Q ss_pred             eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh-
Q psy11830        198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF-  274 (387)
Q Consensus       198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~-  274 (387)
                           +.|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|+++++++++|.+ 
T Consensus       104 -----~~w~~~~~~C~~~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~  178 (500)
T 2rh1_A          104 -----KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM  178 (500)
T ss_dssp             -----TSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----CCCcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchhe
Confidence                 369999 8999999999999999999999999999999999999998 99999999999999999999876764 


Q ss_pred             eecccCC--ceeeeccCc--CcccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830        275 GISSYST--TSICLPMDT--RHLGSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLTA  330 (387)
Q Consensus       275 ~~~~~~~--~~~C~~~~~--~~~~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~  330 (387)
                      ++.....  ...|...+.  +......|.+. .++.+++|+++++++|.+|++.+|++.++
T Consensus       179 ~~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~  239 (500)
T 2rh1_A          179 HWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNI  239 (500)
T ss_dssp             TTTCCCSHHHHHHHHCTTCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred             eeecccccCcceecccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433222  234543221  22223444444 34556999999999999999999987665

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.94  E-value=1.1e-27  Score=228.57  Aligned_cols=192  Identities=19%  Similarity=0.296  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830        117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE  196 (387)
Q Consensus       117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~  196 (387)
                      ..+.+++..++++.|+              +||+++++++.+++++|+++|+++.|||++|++.++..+|........  
T Consensus        38 ~~~~~~~~~~i~~~gi--------------~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~--  101 (349)
T 1u19_A           38 FSMLAAYMFLLIMLGF--------------PINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH--  101 (349)
T ss_dssp             HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHH--------------HhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhc--
Confidence            3456677777888887              999999999999999999999999999999999999988877654432  


Q ss_pred             eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830        197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFG  275 (387)
Q Consensus       197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~  275 (387)
                            +.|.+| ..|++..++...+..+|++++++||+|||+||++|+++++.+++++...++++|+.+++.+++|.++
T Consensus       102 ------~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~  175 (349)
T 1u19_A          102 ------GYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVG  175 (349)
T ss_dssp             ------TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHSGGGTT
T ss_pred             ------CeeeCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCccceeeccchhHHHHHHHHHHHHHHHHHHHHh
Confidence                  358888 8999999999999999999999999999999999999876788999999999999999999888887


Q ss_pred             eccc---CCceeeeccCcCc---ccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830        276 ISSY---STTSICLPMDTRH---LGSKIYVHTL-LLFSSLVFAMICVCYFQIYSSLGNVLTA  330 (387)
Q Consensus       276 ~~~~---~~~~~C~~~~~~~---~~~~~~~~~~-~~~~~iPl~ii~~~Y~~I~~~lr~~~~~  330 (387)
                      ++.+   +....|...+...   .....|.... .+.+++|+++++++|.+|++++|++.++
T Consensus       176 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~  237 (349)
T 1u19_A          176 WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ  237 (349)
T ss_dssp             SSCCEEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCS
T ss_pred             eeeeeccCCceeecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            6543   2344686554322   2233444433 4456899999999999999999887653

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.94  E-value=4.7e-27  Score=220.00  Aligned_cols=173  Identities=19%  Similarity=0.230  Sum_probs=134.1

Q ss_pred             hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHHHH
Q psy11830        147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLS  225 (387)
Q Consensus       147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~S  225 (387)
                      +||++|+.++.++|++|+++|+++.|||+||+++++..++.....          ..+|.+| ..|+...++...+..+|
T Consensus        27 ~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~~p~~~~~~----------~~~~~~~~~~c~~~~~~~~~~~~~s   96 (296)
T 2lnl_A           27 LGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASK----------VNGWIFGTFLCKVVSLLKEVNFYSG   96 (296)
T ss_dssp             HHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHH----------HSSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHhhhHHHhhc----------cCCCccchhHHHHHhhhhhhhHHHH
Confidence            999999999999999999999999999999999988765544321          1259999 89999999999999999


Q ss_pred             HHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhheecccCC---ceeeeccC--cCcccchhhhH
Q psy11830        226 IFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYST---TSICLPMD--TRHLGSKIYVH  300 (387)
Q Consensus       226 i~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~---~~~C~~~~--~~~~~~~~~~~  300 (387)
                      ++++++||+|||.||++|++++..+++++..+++.+|+.+++.+.|+...+..+..   ...|....  ........+..
T Consensus        97 ~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (296)
T 2lnl_A           97 ILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRI  176 (296)
T ss_dssp             HHHHHHHHHHHHHHSSSCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCCSCCSCCTTTTTTHHHH
T ss_pred             HHHHHHHHhhhhhhhhhccccchhhhhhhHheehHHHHHHHHHhcchhhcceeecCCCCCceeeeeccccchhhHHHHHH
Confidence            99999999999999999999988445677778889999999999777776554432   22222221  12222223333


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830        301 -TLLLFSSLVFAMICVCYFQIYSSLGNVLT  329 (387)
Q Consensus       301 -~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~  329 (387)
                       .....+++|+.++..+|.++.++++++.+
T Consensus       177 ~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~  206 (296)
T 2lnl_A          177 LPHTFGFIVPLFVMLFCYGFTLRTLFKAHM  206 (296)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             34556689999999999998776665443

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.94  E-value=2.3e-27  Score=237.65  Aligned_cols=191  Identities=18%  Similarity=0.226  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy11830        116 ADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQST  195 (387)
Q Consensus       116 ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~  195 (387)
                      ...+..+...+++++|+              +||++|++++.+++++|+++|+|+.|||++|+++++ ..|..+....  
T Consensus        47 ~~~~~~~~~~~i~~~g~--------------~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~~-~~p~~~~~~~--  109 (502)
T 3odu_A           47 NKIFLPTIYSIIFLTGI--------------VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAV--  109 (502)
T ss_dssp             HHHHHHHHHHHHHHHHH--------------HHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHT-THHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHh--
Confidence            35666677777777887              999999999999999999999999999999999964 5555554332  


Q ss_pred             ceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhh
Q psy11830        196 EVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPM  273 (387)
Q Consensus       196 ~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~  273 (387)
                             .+|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|+++++++++++
T Consensus       110 -------~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~  182 (502)
T 3odu_A          110 -------ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF  182 (502)
T ss_dssp             -------TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHH
T ss_pred             -------cCCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHH
Confidence                   159999 8899999999999999999999999999999999999999 9999999999999999999997777


Q ss_pred             heec--ccCCceeeeccCcCcccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830        274 FGIS--SYSTTSICLPMDTRHLGSKIYVHTL-LLFSSLVFAMICVCYFQIYSSLGNVLTA  330 (387)
Q Consensus       274 ~~~~--~~~~~~~C~~~~~~~~~~~~~~~~~-~~~~~iPl~ii~~~Y~~I~~~lr~~~~~  330 (387)
                      +...  ...+...|...++.......|.+.. ++.+++|+++++++|.+|++.++++.++
T Consensus       183 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~  242 (502)
T 3odu_A          183 IFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSN  242 (502)
T ss_dssp             HHEEEEECSSSEEEEECCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCC
T ss_pred             HheeeeccCCceEEeecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            6443  2345667986665554444454443 4556899999999999999999987654

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.93  E-value=1.7e-27  Score=235.86  Aligned_cols=190  Identities=19%  Similarity=0.229  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830        117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE  196 (387)
Q Consensus       117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~  196 (387)
                      +.+..+.+.++++.|+              +||+++++++.+++++|+++|+++.|||++|+++++. .|..+.....  
T Consensus        17 ~~~~~~~~~~~~~~gi--------------~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~--   79 (464)
T 4dkl_A           17 AITIMALYSIVCVVGL--------------FGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLM--   79 (464)
T ss_dssp             HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHH--------------HHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh--
Confidence            4556666777777777              9999999999999999999999999999999999987 6655544332  


Q ss_pred             eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830        197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF  274 (387)
Q Consensus       197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~  274 (387)
                            +.|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|++++++++|+++
T Consensus        80 ------~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~  153 (464)
T 4dkl_A           80 ------GTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMF  153 (464)
T ss_dssp             ------SSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHH
Confidence                  369999 8999999999999999999999999999999999999998 99999999999999999999977666


Q ss_pred             eec--ccCCceeeeccCcCccc--chhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830        275 GIS--SYSTTSICLPMDTRHLG--SKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLT  329 (387)
Q Consensus       275 ~~~--~~~~~~~C~~~~~~~~~--~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~  329 (387)
                      ...  ...+...|...+.....  ...|... .++.+++|+++++++|.+|++.+|++++
T Consensus       154 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~  213 (464)
T 4dkl_A          154 MATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRN  213 (464)
T ss_dssp             SBCCEEETTEEECCBCCSSSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred             heeecccCCCceEEeecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            332  23345668655443322  2233333 3445689999999999999999987665

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.93  E-value=3.9e-27  Score=234.84  Aligned_cols=190  Identities=20%  Similarity=0.274  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830        117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE  196 (387)
Q Consensus       117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~  196 (387)
                      +.+..+...++++.|+              +||+++++++.+++++|+++|+|+.|||++|++++++.+|..+....   
T Consensus        21 ~~~~~~~~~~i~~~gi--------------~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~---   83 (488)
T 3eml_A           21 SSVYITVELAIAVLAI--------------LGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST---   83 (488)
T ss_dssp             THHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT---
T ss_pred             hhHHHHHHHHHHHHHH--------------HHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            3445566666777777              99999999999999999999999999999999999998887764321   


Q ss_pred             eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830        197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF  274 (387)
Q Consensus       197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~  274 (387)
                             .|..| ..|++..++..++..+|++++++||+|||++|++|++|++ .+++++..+++++|+++++++++|++
T Consensus        84 -------~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~  156 (488)
T 3eml_A           84 -------GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML  156 (488)
T ss_dssp             -------CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred             -------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   58788 8999999999999999999999999999999999999998 99999999999999999999999998


Q ss_pred             eecccCC-------ceeeeccCc-----CcccchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830        275 GISSYST-------TSICLPMDT-----RHLGSKIYVH-TLLLFSSLVFAMICVCYFQIYSSLGNVLTA  330 (387)
Q Consensus       275 ~~~~~~~-------~~~C~~~~~-----~~~~~~~~~~-~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~  330 (387)
                      ++..+..       ...|...+.     .......+.. ..++.+++|+++++++|.+|++.++++.++
T Consensus       157 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~  225 (488)
T 3eml_A          157 GWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNI  225 (488)
T ss_dssp             TCCSSCC-------CCSSCTTCEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred             ccccccccccccccccccccccceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            7765442       133543221     1112222332 345566899999999999999999987654

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.93  E-value=2.1e-27  Score=236.76  Aligned_cols=185  Identities=19%  Similarity=0.273  Sum_probs=156.1

Q ss_pred             HHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceee
Q psy11830        120 MAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYF  199 (387)
Q Consensus       120 ~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~  199 (387)
                      .++.+.+++++|+              +||+++++++.+++++|+++|+|+.|||++|++++++.+|..+.....     
T Consensus        41 ~~~~~~~~~~~g~--------------~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~-----  101 (481)
T 3pbl_A           41 YALSYCALILAIV--------------FGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVT-----  101 (481)
T ss_dssp             CCSHHHHHHHHHH--------------HHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHH--------------HHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            4445556666776              999999999999999999999999999999999999988887755443     


Q ss_pred             ccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccc---cc-cccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830        200 NYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYA---NK-LTIHRTTYFILVGYVYASIMGALPMF  274 (387)
Q Consensus       200 ~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~---~~-~t~~~~~~~i~~iWi~s~~~~~~p~~  274 (387)
                        ...|.+| ..|++..++..++..+|++++++||+|||+||++|++|   .+ .+++++..+++++|++++++++++++
T Consensus       102 --~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~  179 (481)
T 3pbl_A          102 --GGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLF  179 (481)
T ss_dssp             --TSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --cCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              2369999 89999999999999999999999999999999999998   55 88899999999999999999988888


Q ss_pred             eecccCCceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830        275 GISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTA  330 (387)
Q Consensus       275 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~  330 (387)
                      +++...+...|...+     ..+.....++.+++|+++++++|++|++.+++++++
T Consensus       180 ~~~~~~~~~~C~~~~-----~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~  230 (481)
T 3pbl_A          180 GFNTTGDPTVCSISN-----PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRK  230 (481)
T ss_dssp             TTCCCSSTTCCSCCC-----HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             eecccCCCCcccccC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            877766666786432     123333445667999999999999999999987664

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.93  E-value=1.7e-27  Score=235.42  Aligned_cols=186  Identities=20%  Similarity=0.226  Sum_probs=152.1

Q ss_pred             HHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceee
Q psy11830        120 MAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYF  199 (387)
Q Consensus       120 ~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~  199 (387)
                      .++.+.++++.|+              +||+++++++.+++++|+++|+++.|||++|+++++...|..+.....     
T Consensus        11 ~~~~~~~~~~~gi--------------~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~-----   71 (452)
T 3rze_A           11 LVVVLSTICLVTV--------------GLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM-----   71 (452)
T ss_dssp             GGTHHHHHHHHHH--------------HHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHS-----
T ss_pred             HHHHHHHHHHHHH--------------HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence            4455666667776              999999999999999999999999999999999999998888765543     


Q ss_pred             ccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheec
Q psy11830        200 NYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGIS  277 (387)
Q Consensus       200 ~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~  277 (387)
                         +.|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|+++++++ .|.+++.
T Consensus        72 ---~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~-~p~~~~~  147 (452)
T 3rze_A           72 ---SKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWV-IPILGWN  147 (452)
T ss_dssp             ---SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGH-HHHHCCC
T ss_pred             ---CCccCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence               379999 8999999999999999999999999999999999999999 999999999999999999887 6676665


Q ss_pred             ccC------CceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830        278 SYS------TTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTA  330 (387)
Q Consensus       278 ~~~------~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~  330 (387)
                      .+.      ....|...+..  ...+.....++.+++|+++++++|.+|++.+|++.++
T Consensus       148 ~~~~~~~~~~~~~C~~~~~~--~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~  204 (452)
T 3rze_A          148 HFMQQTSVRREDKCETDFYD--VTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNI  204 (452)
T ss_dssp             C-------CCSSSSCCSCTT--CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCH
T ss_pred             hcccccccCCCCeecCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            543      23356533322  1222233345566999999999999999999887554

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.93  E-value=2.4e-26  Score=221.05  Aligned_cols=188  Identities=21%  Similarity=0.298  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830        118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV  197 (387)
Q Consensus       118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~  197 (387)
                      .+.++...++++.|+              +||+++++++.+++++|+++|+++.|||++|+++++...|..+....    
T Consensus        33 ~~~~~~~~~i~~~gi--------------~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~----   94 (364)
T 2ks9_A           33 VLWAAAYTVIVVTSV--------------VGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAV----   94 (364)
T ss_dssp             HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            444555666777777              99999999999999999999999999999999999888887664433    


Q ss_pred             eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhee
Q psy11830        198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGI  276 (387)
Q Consensus       198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~  276 (387)
                          .+.|.+| ..|++.+++...+..+|++++++||+|||+||++|++++ .+++++...++++|+.+++.++|+. .+
T Consensus        95 ----~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~-~~~~~~~~~i~~~W~~s~~~~~p~~-~~  168 (364)
T 2ks9_A           95 ----HNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPR-LSATATKVVICVIWVLALLLAFPQG-YY  168 (364)
T ss_dssp             ----HTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTS-CCHHHHHHHHHHHHHHHHHHHTTTT-TT
T ss_pred             ----cCCccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccchHHHHHHHHHHHHHHHHhHHH-HH
Confidence                2369999 899999999999999999999999999999999999987 6888889999999999999985544 33


Q ss_pred             ccc---CCceeeeccCcCcc---cchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830        277 SSY---STTSICLPMDTRHL---GSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLT  329 (387)
Q Consensus       277 ~~~---~~~~~C~~~~~~~~---~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~  329 (387)
                      ...   .+...|...++...   ....|... .++.+++|+++++++|.+|.+.++++++
T Consensus       169 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~  228 (364)
T 2ks9_A          169 STTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEI  228 (364)
T ss_dssp             SCCCBCTTCSSBCCCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             hhheecCCCCEEeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            332   23456875544332   22334443 3455689999999999999999987654

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.93  E-value=3.5e-27  Score=221.35  Aligned_cols=191  Identities=17%  Similarity=0.270  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830        118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV  197 (387)
Q Consensus       118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~  197 (387)
                      ...++...++++.|+              +||++++.++.+++++|+++|+++.|||++|++.++...|..+....    
T Consensus        12 ~~~~~~~~~~~~~gi--------------~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~----   73 (315)
T 4amj_A           12 AGMSLLMALVVLLIV--------------AGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVV----   73 (315)
T ss_dssp             HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHH--------------HHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHh----
Confidence            445566667777777              99999999999999999999999999999999998888887765443    


Q ss_pred             eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830        198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFG  275 (387)
Q Consensus       198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~  275 (387)
                          .++|.+| ..|++.+++...+..+|++++++||+|||+||++|+++++ .+++++...++++|+.+++.+.+|.+.
T Consensus        74 ----~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~  149 (315)
T 4amj_A           74 ----RGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMM  149 (315)
T ss_dssp             ----HSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----cCCeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHH
Confidence                2369999 8999999999999999999999999999999999999998 999999999999999999999888774


Q ss_pred             ecccC---CceeeeccCc--CcccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830        276 ISSYS---TTSICLPMDT--RHLGSKIYVHTL-LLFSSLVFAMICVCYFQIYSSLGNVLTA  330 (387)
Q Consensus       276 ~~~~~---~~~~C~~~~~--~~~~~~~~~~~~-~~~~~iPl~ii~~~Y~~I~~~lr~~~~~  330 (387)
                      .....   +...|...+.  +......|.... .+.+++|+++++++|.+|++.+|++.++
T Consensus       150 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~  210 (315)
T 4amj_A          150 HWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRK  210 (315)
T ss_dssp             TTTCCCSHHHHHHHHCTTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HhccccCCCccccccccccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33222   1234543221  222334444443 3445899999999999999999987664

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.92  E-value=1.7e-26  Score=228.76  Aligned_cols=193  Identities=21%  Similarity=0.343  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHhhcc
Q psy11830        117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL-LLLAIKDLQST  195 (387)
Q Consensus       117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~-~~~~~~~~~~~  195 (387)
                      ....+++..+++++|+              +||+++++++.+++++|++.|++++|||++|++.+++. +|..+....  
T Consensus        34 ~~~~~i~~~ii~i~gi--------------~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~--   97 (448)
T 2z73_A           34 YYSLGIFIGICGIIGC--------------GGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF--   97 (448)
T ss_dssp             HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHH--------------hhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHh--
Confidence            3556777888888887              99999999999999999999999999999999998874 665554433  


Q ss_pred             ceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhh
Q psy11830        196 EVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPM  273 (387)
Q Consensus       196 ~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~  273 (387)
                            ...|.+| ..|++..++..++..+|++++++||+|||++|++|+++++ .+++++..+++++|+++++++++++
T Consensus        98 ------~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~  171 (448)
T 2z73_A           98 ------LKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPI  171 (448)
T ss_dssp             ------TTSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred             ------cCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHH
Confidence                  2368888 8999999999999999999999999999999999999988 9999999999999999999998888


Q ss_pred             heecccC---CceeeeccCcC-cccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy11830        274 FGISSYS---TTSICLPMDTR-HLGSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLTAD  331 (387)
Q Consensus       274 ~~~~~~~---~~~~C~~~~~~-~~~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~  331 (387)
                      ++++.+.   ....|...+.. +.....+... .++.+++|+++++++|.+|++.++|+.++.
T Consensus       172 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~  234 (448)
T 2z73_A          172 FGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEM  234 (448)
T ss_dssp             GTSSCEEECTTSSSEEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             hceeeeeecCCceeEecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8765432   23457644332 2223334333 344468999999999999999998877643

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.92  E-value=1e-26  Score=234.78  Aligned_cols=193  Identities=18%  Similarity=0.315  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830        117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE  196 (387)
Q Consensus       117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~  196 (387)
                      ....++++.+++++|+              +||+++++++.+++++|+++|++++|||++|++++++.+|..+.....  
T Consensus       182 ~~~~~i~~~ii~~~gi--------------~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~--  245 (514)
T 3sn6_R          182 VVGMGIVMSLIVLAIV--------------FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT--  245 (514)
T ss_dssp             HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHH--------------HhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHc--
Confidence            3556777788888887              999999999999999999999999999999999999888887765542  


Q ss_pred             eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830        197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF  274 (387)
Q Consensus       197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~  274 (387)
                            ..|.+| ..|++..++..++..+|++++++||+|||++|++|++|++ .+++++..+++++|+++++++++|..
T Consensus       246 ------~~~~~~~~~C~~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~  319 (514)
T 3sn6_R          246 ------KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ  319 (514)
T ss_dssp             ------TSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             ------CCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence                  369999 8999999999999999999999999999999999999999 99999999999999999999877764


Q ss_pred             -eecccCC--ceeeeccC--cCcccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy11830        275 -GISSYST--TSICLPMD--TRHLGSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLTAD  331 (387)
Q Consensus       275 -~~~~~~~--~~~C~~~~--~~~~~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~  331 (387)
                       .+..+..  ...|....  ........|... .++.+++|+++++++|.+|++.+|++.++.
T Consensus       320 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~  382 (514)
T 3sn6_R          320 MHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKI  382 (514)
T ss_dssp             TTTTC---CHHHHHHHSSSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceecccCcccceeecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence             3333221  22343221  122233344443 455568999999999999999998876543

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.92  E-value=1.3e-26  Score=228.75  Aligned_cols=190  Identities=20%  Similarity=0.265  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830        117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE  196 (387)
Q Consensus       117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~  196 (387)
                      +.+..+...++++.|+              +||+++++++.+++++|+++|+++.|||++|+++++..+|..+...    
T Consensus        31 ~~~~~~i~~~i~~~gi--------------~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~----   92 (447)
T 4eiy_A           31 SSVYITVELAIAVLAI--------------LGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS----   92 (447)
T ss_dssp             HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH----
T ss_pred             cchHHHHHHHHHHHHH--------------HHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            3445555666677776              9999999999999999999999999999999999998888776432    


Q ss_pred             eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830        197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF  274 (387)
Q Consensus       197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~  274 (387)
                            ..|..| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|+++++++++|.+
T Consensus        93 ------~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~  166 (447)
T 4eiy_A           93 ------TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML  166 (447)
T ss_dssp             ------TTCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred             ------cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhhh
Confidence                  157677 8899999999999999999999999999999999999998 99999999999999999999989998


Q ss_pred             eecccCCc-------eeeeccCc-----CcccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830        275 GISSYSTT-------SICLPMDT-----RHLGSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLTA  330 (387)
Q Consensus       275 ~~~~~~~~-------~~C~~~~~-----~~~~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~  330 (387)
                      ++..+...       ..|.+.+.     .......+... .++.+++|+++++++|.+|++.+|++.++
T Consensus       167 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~  235 (447)
T 4eiy_A          167 GWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLAD  235 (447)
T ss_dssp             TCSSTTSCCHHHHHHTTCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccccCccccccccccccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77654421       22432211     11111222222 23445899999999999999999987554

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.40  E-value=6.4e-08  Score=58.31  Aligned_cols=29  Identities=38%  Similarity=0.442  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHhheeccccccc-cccc
Q psy11830        224 LSIFTLGMITLERWYSIKRALYANK-LTIH  252 (387)
Q Consensus       224 ~Si~~L~~isidRy~aI~~P~~~~~-~t~~  252 (387)
                      +|++++++||+|||+||++|++|.. .+++
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~   31 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAIEYNLKRTPR   31 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHGGGSSCCCC
T ss_pred             cHHHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence            6899999999999999999999987 6654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.25  E-value=5.9e-07  Score=85.51  Aligned_cols=48  Identities=8%  Similarity=0.137  Sum_probs=43.4

Q ss_pred             cceeeEEEc-cCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIV-RTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|.+|++. +|+++.||++.|+++++|+.|||++|+|+.+++..|.++
T Consensus       177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L  225 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  225 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTC
T ss_pred             cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccc
Confidence            468888886 589999999999999999999999999999999988876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.09  E-value=1.9e-06  Score=73.18  Aligned_cols=56  Identities=5%  Similarity=0.077  Sum_probs=46.2

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccC
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKI   62 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~   62 (387)
                      ..+|++|++++|+|+.++...|.++.+|+.|+|++|+|+.+++..|.++  .+++.+.
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l--~~L~~L~   84 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL--TQLTQLS   84 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC--TTCCEEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC--CCCCEEE
Confidence            4678889999999999988889999999999999999999998888776  4444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.07  E-value=2.5e-06  Score=74.08  Aligned_cols=47  Identities=21%  Similarity=0.384  Sum_probs=23.7

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++|+|..++...|.++.+|+.|+|++|+|+.+++.+|.++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l  101 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL  101 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence            34455555555555555555555555555555555555555544443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.02  E-value=3.4e-06  Score=71.96  Aligned_cols=55  Identities=5%  Similarity=0.136  Sum_probs=44.8

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      ..+|++|++++|+|+.+++..|.++++|+.|+|++|+|+.+++..|.++  .+++.+
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l--~~L~~L   86 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL--TQLTQL   86 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc--chhhEE
Confidence            3678889999999999988888889999999999999999888888665  444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.97  E-value=5.4e-06  Score=70.40  Aligned_cols=54  Identities=17%  Similarity=0.182  Sum_probs=48.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++++|+|+.+|+..|..+++|+.|+|++|+|+.+++..|..+  .+++.+
T Consensus        54 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L  107 (170)
T 3g39_A           54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL--KSLTHI  107 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEE
T ss_pred             ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCC--CCCCEE
Confidence            579999999999999999999999999999999999999999999776  444433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.96  E-value=5.4e-06  Score=73.49  Aligned_cols=48  Identities=13%  Similarity=0.162  Sum_probs=35.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|..++...|.++++|+.|+|++|+|+.+++..|.++
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l  103 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL  103 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence            467777777777777777777777777777777777777777777655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.95  E-value=6.4e-06  Score=70.26  Aligned_cols=54  Identities=19%  Similarity=0.158  Sum_probs=48.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++++|+|+.+|+..|.++++|+.|+|++|+|+.+++..|..+  .+++.+
T Consensus        57 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l--~~L~~L  110 (174)
T 2r9u_A           57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL--KSLTHI  110 (174)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCSEE
T ss_pred             cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccc--cCCCEE
Confidence            579999999999999999999999999999999999999999989776  444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.84  E-value=9.5e-06  Score=71.87  Aligned_cols=54  Identities=13%  Similarity=0.213  Sum_probs=43.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++++|+|+.+++..|.++.+|+.|+|++|+|+.+++..|.++  .+++.+
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L  110 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL--ESLKTL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC--SSCCEE
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC--cCCCEE
Confidence            468888888888888888888888888888888888888888888766  444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.83  E-value=1.1e-05  Score=69.80  Aligned_cols=48  Identities=19%  Similarity=0.136  Sum_probs=32.3

Q ss_pred             cceeeEEEccCccccCCCC-CcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQF-PVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|..+|+. .|..+++|+.|+|++|+|+.+++..|.++
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   77 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence            3666777777777777653 46667777777777777777766666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.81  E-value=1.1e-05  Score=71.45  Aligned_cols=56  Identities=20%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccC
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKI   62 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~   62 (387)
                      ..+|++|++++|+|+.+|+..|.++++|+.|+|++|+|+.+++.+|.++  .+++.+.
T Consensus        31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l--~~L~~L~   86 (220)
T 2v9t_B           31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL--RSLNSLV   86 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC--SSCCEEE
T ss_pred             CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC--cCCCEEE
Confidence            3578999999999999999999999999999999999999999999887  4454443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.80  E-value=6.8e-06  Score=83.62  Aligned_cols=49  Identities=18%  Similarity=0.217  Sum_probs=40.6

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      -.++++||+++|+|+.||+..|+++++|+.|||++|+|+.+++.+|.++
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L   99 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL   99 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCC
Confidence            3577888888888888888888888888888888888888888888776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.79  E-value=1.3e-05  Score=71.39  Aligned_cols=48  Identities=8%  Similarity=0.157  Sum_probs=29.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|..++...|.++.+|+.|+|++|+|+.+++..|.++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l   87 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL   87 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence            455666666666666666666666666666666666666666555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.78  E-value=1.3e-05  Score=70.94  Aligned_cols=55  Identities=16%  Similarity=0.145  Sum_probs=45.0

Q ss_pred             ccceeeEEEccCccccC-CCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          5 ANSLLDMKIVRTGLNHI-PQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+.+++|++++|+|+.+ |+..|..+++|+.|+|++|+|+.+++.+|.++  .+++.+
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l--~~L~~L   86 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA--SGVNEI   86 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC--TTCCEE
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCC--CCCCEE
Confidence            45678899999999999 45778999999999999999999999888776  444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.78  E-value=1.4e-05  Score=69.37  Aligned_cols=70  Identities=16%  Similarity=0.301  Sum_probs=54.3

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNT   77 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~   77 (387)
                      ..+|++|++++|+|+.+| ..|.++.+|+.|+|++|+|+.+++.+|.++  .+++.+...+..-+. .++.|..
T Consensus        30 ~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l--~~L~~L~Ls~N~l~~i~~~~f~~  100 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLRCIPPRTFDG  100 (193)
T ss_dssp             CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCBCCTTTTTT
T ss_pred             CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCC--CCCCEEECCCCccCEeCHHHhCC
Confidence            468999999999999999 689999999999999999999999999887  555555433332222 3445544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.75  E-value=1.8e-05  Score=67.20  Aligned_cols=48  Identities=15%  Similarity=0.193  Sum_probs=35.0

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.+|...|+++++|+.|+|++|+|+.+++..|.+.
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   75 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL   75 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCC
Confidence            467777777777777777777777777777777777777777766555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.72  E-value=1.6e-05  Score=80.77  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=49.0

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccC
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKI   62 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~   62 (387)
                      .+|++|++++|+|+.||+..|+++.+|+.|+|++|+|+.+++..|.++  .+++.+.
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L--~~L~~L~  130 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL--SSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC--TTCCEEE
T ss_pred             CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC--CCCCEEE
Confidence            479999999999999999999999999999999999999999999887  5555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.69  E-value=2.2e-05  Score=74.13  Aligned_cols=57  Identities=11%  Similarity=0.120  Sum_probs=47.4

Q ss_pred             cceeeEEEcc-CccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCC
Q psy11830          6 NSLLDMKIVR-TGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRP   64 (387)
Q Consensus         6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~   64 (387)
                      .+|++|+|++ |+|..+|+..|.++.+|+.|||++|+|+.+++.+|.++  .+|+.+...
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~l~   88 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT--PRLSRLNLS   88 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC--SCCCEEECC
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC--cCCCEEeCC
Confidence            3589999996 99999999999999999999999999999999999877  555544333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.61  E-value=3.7e-05  Score=69.25  Aligned_cols=48  Identities=17%  Similarity=0.279  Sum_probs=38.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|..+|...|+.+++|+.|+|++|+|+.+++..|...
T Consensus        83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  130 (251)
T 3m19_A           83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL  130 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC
Confidence            467888888888888888888888888888888888888887777655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.61  E-value=3.9e-05  Score=66.90  Aligned_cols=48  Identities=15%  Similarity=0.194  Sum_probs=37.7

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.+|...|.++++|+.|+|++|+|+.+++..|.+.
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   99 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL   99 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence            467788888888888888778888888888888888888877777655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.59  E-value=2.4e-05  Score=73.52  Aligned_cols=82  Identities=21%  Similarity=0.333  Sum_probs=65.2

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccc-ccCCCCccccC-CCCCCCchhhhH
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFV-SKIRPEQKLNP-RPSAYNTYYNFT   82 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~-~~~~~~~~~~p-~~~~~~~~~~~l   82 (387)
                      ..+|+++++++|+++.||+..|.++.+|+.++|++| ++.|++.+|.++  ..++ .+..++ .... ++++|..|...-
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~--~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNC--GRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC--TTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCC--hhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            468999999999999999999999999999999998 999999999998  6665 554444 3322 678888887655


Q ss_pred             HhhhccCe
Q psy11830         83 RLIFPGNA   90 (387)
Q Consensus        83 ~~~~~gn~   90 (387)
                      .+.+-+|.
T Consensus       301 ~l~l~~n~  308 (329)
T 3sb4_A          301 YVLATGDK  308 (329)
T ss_dssp             EEEECSSC
T ss_pred             EEEeCCCc
Confidence            54443443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.59  E-value=4.3e-05  Score=64.87  Aligned_cols=54  Identities=9%  Similarity=0.258  Sum_probs=45.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++++|+|..+|+..|.++++|+.|+|++|+|+.+++..|.+.  .+++.+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L  105 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL--TQLKEL  105 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEE
T ss_pred             ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCC--cccCEE
Confidence            578999999999999999999999999999999999999998888765  444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.58  E-value=3.4e-05  Score=73.55  Aligned_cols=48  Identities=13%  Similarity=0.134  Sum_probs=34.9

Q ss_pred             cceeeEEEccCccccCCCCCcc-cccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVS-NDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +.+++|++++|+|+.+++..|. ++.+|+.|+|++|+|+.+++.+|.++
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l   87 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV   87 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence            4566777777777777777776 77777777777777777777777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.58  E-value=3.6e-05  Score=72.67  Aligned_cols=49  Identities=16%  Similarity=0.308  Sum_probs=46.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQ   54 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~   54 (387)
                      .+|++|+|++|+|+.+|+..|.++++|+.|||++|+|+.+++..|..++
T Consensus        56 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~  104 (347)
T 2ifg_A           56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS  104 (347)
T ss_dssp             CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred             cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC
Confidence            5799999999999999999999999999999999999999999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.55  E-value=5.3e-05  Score=66.03  Aligned_cols=55  Identities=13%  Similarity=0.216  Sum_probs=47.6

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      ..+|++|++++|+++.+|+..|+++++|+.|+|++|+++.+++..|.+.  .+++.+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L   81 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL--TSLTYL   81 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC--TTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCC--CCcCEE
Confidence            3578999999999999999999999999999999999999999888776  444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.54  E-value=5.5e-05  Score=67.28  Aligned_cols=68  Identities=16%  Similarity=0.190  Sum_probs=53.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccCCCCCC
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAY   75 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~~~   75 (387)
                      .+|++|++++|+|..+|...|.++++|+.|+|++|+|+.+++..|..+  .+++.+...+.+-..-|+.+
T Consensus        64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l--~~L~~L~Ls~N~l~~lp~~~  131 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL--VHLKELFMCCNKLTELPRGI  131 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCSCCTTG
T ss_pred             cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc--hhhCeEeccCCcccccCccc
Confidence            579999999999999999999999999999999999999999998776  55555543333333344444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.53  E-value=5.7e-05  Score=67.99  Aligned_cols=54  Identities=9%  Similarity=0.039  Sum_probs=47.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++++|+|+.+++..|.++++|+.|+|++|+|+.+++..|...  .+++.+
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L  112 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL--TQLDKL  112 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC--TTCCEE
T ss_pred             ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhccc--CCCCEE
Confidence            579999999999999999999999999999999999999999988776  444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.53  E-value=5.2e-05  Score=70.07  Aligned_cols=48  Identities=13%  Similarity=0.155  Sum_probs=41.0

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|+.+|...|.++.+|+.|+|++|+|+.+++..|..+
T Consensus       100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  147 (290)
T 1p9a_G          100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT  147 (290)
T ss_dssp             TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc
Confidence            468888888888888888888888888888888888888888888765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.51  E-value=5.9e-05  Score=65.14  Aligned_cols=55  Identities=22%  Similarity=0.288  Sum_probs=46.9

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccC
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKI   62 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~   62 (387)
                      .+|++|++++|+|+.++...|.++++|+.|+|++|+|+.+++..|.++  .+++.+.
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~  108 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL--HQLKTLN  108 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC--TTCCEEE
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCC--CCCCEEE
Confidence            478999999999999998999999999999999999999999988776  4454443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.44  E-value=3.5e-05  Score=68.77  Aligned_cols=49  Identities=22%  Similarity=0.354  Sum_probs=43.5

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCc-ceeeccccccCc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNN-IKIIEGRAFNGS   53 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~-i~~~~~~~f~~~   53 (387)
                      ..+|++|++++|+|+.+|+..|+++++|+.|+|++|+ ++.+++.+|.++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l   79 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL   79 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESC
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCC
Confidence            4578999999999999999999999999999999997 999999888776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.44  E-value=8.4e-05  Score=68.61  Aligned_cols=53  Identities=13%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++++|+|..+|+ .+..+++|+.|+|++|+|+.+++..|.++  ..++.+
T Consensus        77 ~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l--~~L~~L  129 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQEL  129 (290)
T ss_dssp             TTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTC--TTCCEE
T ss_pred             CcCCEEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCC--CCCCEE
Confidence            578999999999999986 56789999999999999999999999876  444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.43  E-value=8.4e-05  Score=70.45  Aligned_cols=49  Identities=22%  Similarity=0.289  Sum_probs=45.0

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcc-eeeccccccCc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNI-KIIEGRAFNGS   53 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i-~~~~~~~f~~~   53 (387)
                      -.++++|++++|+|+.||++.|+++++|+.|+|++|+| +.+++.+|.++
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L   78 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL   78 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence            35799999999999999999999999999999999998 56899999876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.38  E-value=9.1e-05  Score=70.54  Aligned_cols=71  Identities=11%  Similarity=0.123  Sum_probs=55.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCch
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNTY   78 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~~   78 (387)
                      .+|++|++++|+|..++...|.++++|+.|||++|+|+.+++..|.++  .+++.+...+..... .++.|...
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~l  135 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL--QALEVLLLYNNHIVVVDRNAFEDM  135 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTTC
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC--cCCCEEECCCCcccEECHHHhCCc
Confidence            579999999999999999999999999999999999999999999887  555555333322221 34555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.38  E-value=0.00011  Score=66.87  Aligned_cols=48  Identities=19%  Similarity=0.360  Sum_probs=37.0

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.+|...|+++++|+.|+|++|+|+.+++..|.+.
T Consensus       109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  156 (270)
T 2o6q_A          109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL  156 (270)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence            467778888888888887777777888888888888887777777655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.36  E-value=0.00012  Score=66.59  Aligned_cols=48  Identities=10%  Similarity=0.247  Sum_probs=36.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|..+|...|.++++|+.|+|++|+|+.+++..|.++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l   84 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL   84 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence            467777777777777777777777777777777777777777777655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.35  E-value=0.00012  Score=71.61  Aligned_cols=45  Identities=20%  Similarity=0.339  Sum_probs=22.5

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++|+++.+|+  +.++.+|+.|+|++|+|+.+++..|.++
T Consensus       186 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  230 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGL  230 (440)
T ss_dssp             SCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred             ccCeecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccC
Confidence            45555555555555543  3444455555555555555555444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.25  E-value=0.00017  Score=65.74  Aligned_cols=56  Identities=18%  Similarity=0.210  Sum_probs=44.2

Q ss_pred             cccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          4 YANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      +..+|++|++++|+++.+|...|.++++|+.|+|++|+|+.+++..|.+.  .+++.+
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L   81 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTL   81 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTC--TTCCEE
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCC--cCCCEE
Confidence            34578888888888888888888888888888888888888888888765  444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.23  E-value=0.00018  Score=70.64  Aligned_cols=48  Identities=27%  Similarity=0.340  Sum_probs=39.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .++++|++++|+|+.++...|+++++|+.|+|++|+|+.+++..|.++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  122 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL  122 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc
Confidence            567888888888888888888888888888888888888888888765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.22  E-value=0.00013  Score=61.76  Aligned_cols=45  Identities=7%  Similarity=-0.017  Sum_probs=36.5

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++|+|+.+  ..+..+++|+.|+|++|+|+.+++..|.+.
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL   87 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence            788888888888888  467788888888888888888887776554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.22  E-value=0.00021  Score=65.34  Aligned_cols=48  Identities=15%  Similarity=0.256  Sum_probs=33.0

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|++..++...|.++++|+.|+|++|+++.+++..|...
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  152 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL  152 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence            356677777777777766667777777777777777777766666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.21  E-value=0.00019  Score=70.09  Aligned_cols=49  Identities=22%  Similarity=0.248  Sum_probs=40.8

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      ..++++|++++|+|+.++...|+++++|+.|+|++|+|+.+++.+|.++
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l  111 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL  111 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence            3567888888888888888888888888888888888888888888776

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.20  E-value=0.00023  Score=64.77  Aligned_cols=48  Identities=15%  Similarity=0.230  Sum_probs=38.1

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.+|...|..+++|+.|+|++|+++.+++..|...
T Consensus       109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  156 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL  156 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC
Confidence            567888888888888888888888888888888888888887777655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.20  E-value=0.00018  Score=70.62  Aligned_cols=45  Identities=16%  Similarity=0.253  Sum_probs=25.3

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++|+++.+|+  +..+.+|+.|+|++|+|+.+++..|.++
T Consensus       197 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  241 (452)
T 3zyi_A          197 NLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGL  241 (452)
T ss_dssp             TCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred             CCCEEECCCCccccccc--ccccccccEEECcCCcCcccCcccccCc
Confidence            45556666666665553  4455555555555555555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.18  E-value=0.00022  Score=64.84  Aligned_cols=54  Identities=19%  Similarity=0.170  Sum_probs=47.6

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++++|+++.++...|.++++|+.|+|++|+++.+++..|.++  .+++.+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L  105 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL--SSLQKL  105 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC--TTCCEE
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC--ccccEE
Confidence            579999999999999999999999999999999999999999999776  444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.18  E-value=0.00012  Score=65.33  Aligned_cols=48  Identities=13%  Similarity=0.096  Sum_probs=43.8

Q ss_pred             cceeeEEEccCc-cccCCCCCcccccceeEEEecC-CcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTG-LNHIPQFPVSNDLVMEVIFLGY-NNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~-n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+ ++.+|+..|+++++|+.|+|++ |+|+.+++..|.+.
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l  104 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL  104 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence            578999999997 9999999999999999999998 99999999998776

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.17  E-value=0.00026  Score=64.50  Aligned_cols=48  Identities=13%  Similarity=0.164  Sum_probs=34.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.+|...|.++++|+.|+|++|+++.+++..|.++
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  132 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL  132 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccC
Confidence            356777777777777777777777777777777777777777666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.15  E-value=0.0001  Score=62.55  Aligned_cols=44  Identities=14%  Similarity=0.139  Sum_probs=32.9

Q ss_pred             cceeeEEEccCccccCCCCCccccc-ceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDL-VMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.+|+  +..+. +|+.|+|++|.|+.+  ..|.++
T Consensus        19 ~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l   63 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLL   63 (176)
T ss_dssp             TSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCC
T ss_pred             CCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccC
Confidence            468889999999988854  33444 889999999998888  455544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.07  E-value=0.00021  Score=67.59  Aligned_cols=49  Identities=14%  Similarity=0.272  Sum_probs=41.1

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      ..+|++|++++|+|+.+|...|+++++|+.|+|++|+|+.+++..|.+.
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL   99 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence            3578888888888888888888888888888888888888888888765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.06  E-value=0.00035  Score=63.85  Aligned_cols=55  Identities=15%  Similarity=0.236  Sum_probs=47.0

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      ..+|++|++++|+|+.+|...|+++++|+.|+|++|+|+.+++..|.+.  ..++.+
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L   85 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL--ALLEQL   85 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC--TTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc--cCCCEE
Confidence            4678999999999999999999999999999999999999999888776  444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.04  E-value=0.00032  Score=69.14  Aligned_cols=47  Identities=17%  Similarity=0.130  Sum_probs=24.0

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++|+++.+|+..|.++++|+.|+|++|+|+.+.+..|.++
T Consensus        81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  127 (477)
T 2id5_A           81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL  127 (477)
T ss_dssp             TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence            44555555555555555555555555555555555555555444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.02  E-value=0.00037  Score=68.60  Aligned_cols=47  Identities=26%  Similarity=0.446  Sum_probs=36.6

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++|+++.+|...|.++++|+.|+|++|.|+.+++..|.++
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence            67788888888888877777777788888888888887777777665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.01  E-value=0.00038  Score=70.70  Aligned_cols=55  Identities=18%  Similarity=0.242  Sum_probs=44.6

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      ..++++|++++|+++.+++..|+++++|+.|+|++|+|+.+++.+|.++  .+++.+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l--~~L~~L   85 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL--HHLSNL   85 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC--TTCCEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhch--hhcCEe
Confidence            4678888888888888888888888888888888888888888888776  444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.00  E-value=0.00043  Score=66.30  Aligned_cols=47  Identities=11%  Similarity=0.357  Sum_probs=27.8

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++|++..+|...|+.+++|+.|+|++|.|+.+++..|.+.
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  116 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  116 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence            45566666666666665566666666666666666666655555444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=96.99  E-value=0.00026  Score=66.97  Aligned_cols=54  Identities=20%  Similarity=0.207  Sum_probs=46.6

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++++|+++.++...|+++++|+.|+|++|+|+.+++..|.+.  .+++.+
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L  129 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL--SSLTFL  129 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTC--TTCSEE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCC--ccCCEE
Confidence            578999999999999999999999999999999999999999888776  444444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=96.92  E-value=0.00045  Score=70.14  Aligned_cols=55  Identities=16%  Similarity=0.098  Sum_probs=45.1

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      -+++++|++++|+|+.+++..|+++++|+.|+|++|+|+.+++.+|.++  .+++.+
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L   86 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ--HRLDTL   86 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTC--TTCCEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCc--cccCee
Confidence            4578889999999999988888889999999999999998888888776  444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=96.88  E-value=0.00052  Score=68.91  Aligned_cols=49  Identities=18%  Similarity=0.217  Sum_probs=37.7

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      ..+++.|++++|+++.+++..|+++++|+.|||++|+|+.+++.+|.++
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l   75 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL   75 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTC
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCc
Confidence            3567778888888888877777778888888888888888777777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=96.87  E-value=0.0005  Score=67.07  Aligned_cols=48  Identities=17%  Similarity=0.191  Sum_probs=37.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|++..++...|.++++|+.|+|++|+++.+++..|.+.
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  346 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL  346 (455)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred             CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence            467788888888888877778888888888888888888877777665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.87  E-value=0.0004  Score=70.36  Aligned_cols=37  Identities=11%  Similarity=0.207  Sum_probs=20.1

Q ss_pred             eeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830          8 LLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      |+.|++++|+|+.+|+  +.++++|+.|+|++|+|+.+|
T Consensus       443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp  479 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALP  479 (567)
T ss_dssp             CSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCC
T ss_pred             ceEEEecCCCCCCCcC--ccccccCcEeecCcccccccc
Confidence            4455555555555553  555555555555555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=96.86  E-value=0.0009  Score=62.45  Aligned_cols=55  Identities=16%  Similarity=0.088  Sum_probs=47.1

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      ..+|++|++++|+|+.+|+..|+++++|+.|+|++|+|+.+++..|.++  .+++.+
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L  105 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL--VKLERL  105 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC--TTCCEE
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC--CCCCEE
Confidence            4578899999999999999999999999999999999999999888776  444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=96.86  E-value=0.00052  Score=64.12  Aligned_cols=48  Identities=10%  Similarity=0.223  Sum_probs=31.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.++...|..+++|+.|+|++|+|+.+++..|.+.
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence            456666666666666666666666667777777777766666666544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=96.85  E-value=0.00046  Score=57.75  Aligned_cols=48  Identities=10%  Similarity=0.021  Sum_probs=39.1

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc-ccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG-RAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~-~~f~~~   53 (387)
                      .+|++|++++|++...++..+.++++|+.|+|++|+|+.++. ..+..+
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l  119 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL  119 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSC
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcC
Confidence            478899999999998667777788999999999999998865 566554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.84  E-value=0.00065  Score=54.84  Aligned_cols=41  Identities=17%  Similarity=0.146  Sum_probs=27.9

Q ss_pred             eEEEccCccc--cCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830         10 DMKIVRTGLN--HIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus        10 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .++.++++++  .+|+....   +|+.|||++|+|+.+++..|.++
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~---~l~~L~Ls~N~l~~l~~~~f~~l   54 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPV---DTTELVLTGNNLTALPPGLLDAL   54 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCT---TCSEEECTTSCCSSCCTTTGGGC
T ss_pred             EEEeCCCCCccccCCCCCCc---CCCEEECCCCcCCccChhhhhhc
Confidence            5667777777  77754332   46677777777777777777665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=96.84  E-value=0.00063  Score=68.31  Aligned_cols=48  Identities=19%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.+++..|+++++|+.|+|++|+++.+++.+|.++
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence            478899999999999999999999999999999999999998888776

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=96.82  E-value=0.00064  Score=66.28  Aligned_cols=48  Identities=19%  Similarity=0.208  Sum_probs=43.7

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|++..++...++.+++|+.|+|++|+|+.+++..|.+.
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  322 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL  322 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc
Confidence            689999999999999999999999999999999999999999888776

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=96.81  E-value=0.00067  Score=64.95  Aligned_cols=48  Identities=17%  Similarity=0.153  Sum_probs=26.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      ++++.|++++|+++.+|+..|+.+++|+.|+|++|+|+.+++..|.+.
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l   92 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA   92 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCC
Confidence            445555555555555555555555555555555555555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=0.0005  Score=64.40  Aligned_cols=72  Identities=25%  Similarity=0.330  Sum_probs=53.5

Q ss_pred             cceeeEEEccCccc--------------------cCCCCCccc--------ccceeEEEecCCcceeeccccccCccccc
Q psy11830          6 NSLLDMKIVRTGLN--------------------HIPQFPVSN--------DLVMEVIFLGYNNIKIIEGRAFNGSQISK   57 (387)
Q Consensus         6 ~~~~~~~~~~~~~~--------------------~~~~~~~~~--------~~~~~~l~l~~n~i~~~~~~~f~~~~~~~   57 (387)
                      .+|++|||++|+|.                    .||+..|.+        +.+|+.++|++ .++.|++.+|.++  .+
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~--~~  125 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC--DN  125 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC--TT
T ss_pred             ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC--cc
Confidence            57899999999998                    788999999        99999999998 9999999999887  55


Q ss_pred             ccccCCCCccc-cCCCCCCCchhh
Q psy11830         58 FVSKIRPEQKL-NPRPSAYNTYYN   80 (387)
Q Consensus        58 ~~~~~~~~~~~-~p~~~~~~~~~~   80 (387)
                      ++.+..++... .=.+++|..|..
T Consensus       126 L~~l~l~~n~i~~i~~~aF~~~~~  149 (329)
T 3sb4_A          126 LKICQIRKKTAPNLLPEALADSVT  149 (329)
T ss_dssp             CCEEEBCCSSCCEECTTSSCTTTC
T ss_pred             cceEEcCCCCccccchhhhcCCCc
Confidence            55554433322 125567766543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=96.79  E-value=0.00077  Score=62.14  Aligned_cols=45  Identities=11%  Similarity=0.192  Sum_probs=21.1

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecccccc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFN   51 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~   51 (387)
                      +|++|++++|++..++...+..+++|+.|+|++|+|+.+++..|.
T Consensus       176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  220 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK  220 (306)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred             CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence            344444444444444444444444444444444444444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=96.78  E-value=0.00046  Score=69.05  Aligned_cols=48  Identities=19%  Similarity=0.245  Sum_probs=29.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.++...|+++++|+.|+|++|+|+.+++.+|.++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   73 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL   73 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccc
Confidence            356666666666666665666666666666666666666666555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.78  E-value=0.00026  Score=72.97  Aligned_cols=48  Identities=23%  Similarity=0.416  Sum_probs=32.1

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.||+..|.++++|+.|||++|+++.+++..|.+.
T Consensus       536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l  583 (680)
T 1ziw_A          536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ  583 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence            356666666666666666666666667777777777766666666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.77  E-value=0.0012  Score=61.78  Aligned_cols=55  Identities=13%  Similarity=0.113  Sum_probs=46.5

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      ..+|++|++++|+|..++...|+++++|+.|+|++|+|+.+++..|.++  .+++.+
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L  107 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL--RKLQKL  107 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC--TTCCEE
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc--CCCCEE
Confidence            3578999999999999999899999999999999999999988888776  444444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.76  E-value=0.0004  Score=65.04  Aligned_cols=48  Identities=17%  Similarity=0.171  Sum_probs=36.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.++...+.++++|+.|+|++|+|+.+++..|...
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  240 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL  240 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence            467777777777777777777777788888888888887777777554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.74  E-value=0.00089  Score=68.94  Aligned_cols=48  Identities=15%  Similarity=0.145  Sum_probs=34.1

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|++..+|+..|+++.+|+.|+|++|+++.+++..|.++
T Consensus        73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  120 (680)
T 1ziw_A           73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ  120 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred             cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence            356777777777777777777777777777777777777777766655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=96.74  E-value=0.00046  Score=57.75  Aligned_cols=46  Identities=13%  Similarity=-0.034  Sum_probs=39.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|+.+  ..+..+++|+.|+|++|+|+...+..+..+
T Consensus        49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   94 (168)
T 2ell_A           49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL   94 (168)
T ss_dssp             GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred             CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence            5799999999999999  778899999999999999999655555433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.74  E-value=0.00089  Score=68.13  Aligned_cols=46  Identities=13%  Similarity=0.265  Sum_probs=21.1

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccC
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNG   52 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~   52 (387)
                      +|++|++++|+|..+|+..|+++++|+.|+|++|.|+.+++..|.+
T Consensus       100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~  145 (597)
T 3oja_B          100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN  145 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence            3444444444444444444444444444444444444444444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=96.73  E-value=0.00075  Score=68.48  Aligned_cols=54  Identities=15%  Similarity=0.150  Sum_probs=43.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++++|+++.+++..|.++.+|+.|+|++|+|+.+++..|.++  .+++.+
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L  109 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL--TSLENL  109 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC--TTCCEE
T ss_pred             ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc--ccCCEE
Confidence            468888888888888888888888888888888888888888888776  444433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.70  E-value=0.00085  Score=67.60  Aligned_cols=48  Identities=13%  Similarity=0.107  Sum_probs=40.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|..+|+..|+++++|+.|+|++|+|+.+++.+|.++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   99 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN   99 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence            578888888888888888888888888888888888888888888775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=96.61  E-value=0.0007  Score=67.74  Aligned_cols=71  Identities=13%  Similarity=0.019  Sum_probs=55.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCcccc--CCCCCCCch
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLN--PRPSAYNTY   78 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~--p~~~~~~~~   78 (387)
                      .+|++|++++|+|+.+++..|+++.+|+.|||++|+++.+++..|.++  .+++.+........  +.++.|...
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l  122 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL--SSLKYLNLMGNPYQTLGVTSLFPNL  122 (549)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC--TTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred             CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC--CCCcEEECCCCcccccchhhhhhcc
Confidence            579999999999999999999999999999999999999999989776  55555533332222  344455443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=96.56  E-value=0.001  Score=67.40  Aligned_cols=48  Identities=15%  Similarity=0.225  Sum_probs=40.1

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|++..+++..|+++.+|+.|+|++|+++.+++..|.++
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  104 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP  104 (606)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred             ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence            468888888888888888888888888888888888888888888776

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.51  E-value=0.00092  Score=69.80  Aligned_cols=37  Identities=19%  Similarity=0.290  Sum_probs=16.0

Q ss_pred             eeeEEEccCccccCCCCCcccccceeEEEecCCcceee
Q psy11830          8 LLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKII   45 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~   45 (387)
                      |++|+|++|+|+.||+ .+.++.+|+.|||++|+|+.+
T Consensus       249 L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l  285 (727)
T 4b8c_D          249 LTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSL  285 (727)
T ss_dssp             CSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSC
T ss_pred             CCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCcc
Confidence            4444444444444432 234444444444444444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.39  E-value=0.0022  Score=64.54  Aligned_cols=47  Identities=11%  Similarity=0.159  Sum_probs=40.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|+.||+..+ .+++|+.|||++|+|+.+++..|...
T Consensus       450 ~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l  496 (562)
T 3a79_B          450 PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRL  496 (562)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred             CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcC
Confidence            578899999999999998888 88899999999999998888877655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.36  E-value=0.0019  Score=65.69  Aligned_cols=48  Identities=10%  Similarity=0.351  Sum_probs=41.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|+.|++++|+|..+|...|+++++|+.|+|++|.|+.+++..|.++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            468888888888888888888888889999999998888888888766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.35  E-value=0.0021  Score=65.09  Aligned_cols=80  Identities=11%  Similarity=0.181  Sum_probs=53.7

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccCC--CCCCCchhhhHH
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPR--PSAYNTYYNFTR   83 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~l~   83 (387)
                      .+|+.|++++|+|+.+|+ .+.++++|+.|+|++|+|+.+|  .|.++  ..++.+...+...+..  |+.+......-.
T Consensus       463 ~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l--~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~  537 (567)
T 1dce_A          463 LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVL  537 (567)
T ss_dssp             TTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTC--SSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             ccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCC--CCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence            479999999999999987 7889999999999999999987  56555  4444443333222222  555544333333


Q ss_pred             hhhccCe
Q psy11830         84 LIFPGNA   90 (387)
Q Consensus        84 ~~~~gn~   90 (387)
                      +.+-||-
T Consensus       538 L~L~~N~  544 (567)
T 1dce_A          538 LNLQGNS  544 (567)
T ss_dssp             EECTTSG
T ss_pred             EEecCCc
Confidence            3444553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=96.35  E-value=0.0017  Score=59.84  Aligned_cols=40  Identities=15%  Similarity=0.096  Sum_probs=20.4

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      +|++|++++|++..+|+. +..+++|+.|+|++|+++.+++
T Consensus        79 ~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~  118 (306)
T 2z66_A           79 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE  118 (306)
T ss_dssp             CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTT
T ss_pred             ccCEEECCCCccccChhh-cCCCCCCCEEECCCCccccccc
Confidence            455555555555555443 4445555555555555555444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=96.32  E-value=0.00065  Score=55.56  Aligned_cols=46  Identities=7%  Similarity=-0.005  Sum_probs=36.2

Q ss_pred             ccceeeEEEccCccc--cCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          5 ANSLLDMKIVRTGLN--HIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      ..+|++|++++|+++  .+|+ .+..+++|+.|+|++|.|+.+  ..|...
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l   63 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKL   63 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCC
T ss_pred             CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcC
Confidence            467888999999988  7775 677888899999999988888  445444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=96.31  E-value=0.00072  Score=55.28  Aligned_cols=48  Identities=13%  Similarity=0.070  Sum_probs=39.0

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc-ccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG-RAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~-~~f~~~   53 (387)
                      .+|++|++++|+|....+..+..+++|+.|+|++|+|+.++. ..+.+.
T Consensus        64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l  112 (149)
T 2je0_A           64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL  112 (149)
T ss_dssp             TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGC
T ss_pred             CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhC
Confidence            478999999999999555677789999999999999998753 556554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=96.28  E-value=0.0012  Score=65.55  Aligned_cols=48  Identities=8%  Similarity=0.113  Sum_probs=36.6

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|+.+++..|+++++|+.|+|++|+|+.+++..|.++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   68 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN   68 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc
Confidence            567777777777777777777777777777777777777777777665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.27  E-value=0.0024  Score=67.73  Aligned_cols=47  Identities=13%  Similarity=0.109  Sum_probs=22.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCC-cceeeccccccC
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYN-NIKIIEGRAFNG   52 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n-~i~~~~~~~f~~   52 (387)
                      .+|++||+++|+|+.+++..|+++.+|+.|+|++| .+..+++.+|.+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~   71 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN   71 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC
Confidence            34555666666655555444444444444444444 333344444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.26  E-value=0.0025  Score=67.54  Aligned_cols=54  Identities=17%  Similarity=0.152  Sum_probs=44.7

Q ss_pred             cceeeEEEccC-ccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRT-GLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++++| .+..|++..|+++++|+.|+|++|.|+.+++..|.++  .+++.+
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L  102 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL--FHLFEL  102 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC--SSCCCE
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC--cccCEe
Confidence            46889999998 6778888889999999999999999999999988876  444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=96.25  E-value=0.0016  Score=60.49  Aligned_cols=45  Identities=13%  Similarity=0.210  Sum_probs=31.2

Q ss_pred             cceeeEEEccCccccCCCCCc-ccccceeEEEecCCcceeeccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPV-SNDLVMEVIFLGYNNIKIIEGRAF   50 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~n~i~~~~~~~f   50 (387)
                      .+|++|++++|++..++...+ ..+++|+.|+|++|.|+.+++..+
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  189 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV  189 (317)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred             CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc
Confidence            467777777777777765554 356777777777777777765544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.17  E-value=0.0016  Score=68.06  Aligned_cols=68  Identities=9%  Similarity=0.103  Sum_probs=49.0

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccCCCCCCCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNT   77 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~   77 (387)
                      .+|++|+|++|+|..||+..| .+.+|+.|+|++|.|+.+++ .|..+  .+|+.+.......+.-|+.|..
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~-~~~~l--~~L~~L~Ls~N~l~~lp~~~~~  291 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPA-EIKNL--SNLRVLDLSHNRLTSLPAELGS  291 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCG-GGGGG--TTCCEEECTTSCCSSCCSSGGG
T ss_pred             CCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccCh-hhhCC--CCCCEEeCcCCcCCccChhhcC
Confidence            568899999999999998888 88999999999999998874 45554  4455444333333344555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=96.16  E-value=0.0029  Score=59.17  Aligned_cols=47  Identities=11%  Similarity=0.203  Sum_probs=37.1

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      ..+|++|++++|+++.+|+. +..+++|+.|+|++|+++.+++. |..+
T Consensus       182 l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~~-l~~l  228 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPA-IHHL  228 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCCGG-GGGC
T ss_pred             CCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCchh-hccC
Confidence            35788899999999888865 77888899999999988887763 5443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=96.14  E-value=0.0026  Score=59.56  Aligned_cols=40  Identities=15%  Similarity=0.264  Sum_probs=18.9

Q ss_pred             ceeeEEEcc-CccccCCCCC--------cccccceeEEEecCCcceeec
Q psy11830          7 SLLDMKIVR-TGLNHIPQFP--------VSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         7 ~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      +|++|++++ |.+..+|+..        |.++++|+.|+|++|+|+.++
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp  199 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP  199 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch
Confidence            455555555 2334444332        223555555555555555444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=96.08  E-value=0.0031  Score=62.60  Aligned_cols=47  Identities=13%  Similarity=0.200  Sum_probs=38.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|+.+|+..+ .+++|+.|+|++|+|+.+++..|...
T Consensus       421 ~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l  467 (520)
T 2z7x_B          421 PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRL  467 (520)
T ss_dssp             TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccC
Confidence            578888888888888888777 88888888888888888888767555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=95.89  E-value=0.0043  Score=57.43  Aligned_cols=44  Identities=9%  Similarity=0.115  Sum_probs=22.2

Q ss_pred             ceeeEEEccCccccCC-CCCcccccceeEEEecCCcceeeccccc
Q psy11830          7 SLLDMKIVRTGLNHIP-QFPVSNDLVMEVIFLGYNNIKIIEGRAF   50 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~~n~i~~~~~~~f   50 (387)
                      +|++|++++|++...+ ...+..+++|+.|+|++|+|+.+++..+
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~  273 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP  273 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence            4555555555555543 2344445555555555555555544443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=95.87  E-value=0.0068  Score=63.52  Aligned_cols=48  Identities=13%  Similarity=0.042  Sum_probs=27.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|+.||+++|++....+..++++++|+.|||++|++++..+..|.++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L  679 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL  679 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence            455666666666664444555566666666666666665555555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=95.86  E-value=0.0027  Score=58.89  Aligned_cols=48  Identities=8%  Similarity=-0.070  Sum_probs=28.2

Q ss_pred             cceeeEEEcc-CccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVR-TGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++ |++.......|.++++|+.|+|++|+|+...+..|..+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  124 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence            3566666663 66664444455666666666666666665555555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=95.86  E-value=0.003  Score=57.12  Aligned_cols=39  Identities=15%  Similarity=0.158  Sum_probs=33.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      .+|++|++++|+|..+|  .++.+++|+.|+|++|+|+.++
T Consensus       106 ~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~  144 (263)
T 1xeu_A          106 ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV  144 (263)
T ss_dssp             SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG
T ss_pred             CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh
Confidence            57888999999999986  4788899999999999999886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.80  E-value=0.0036  Score=56.94  Aligned_cols=41  Identities=17%  Similarity=0.224  Sum_probs=36.5

Q ss_pred             ceeeEEEccCccccCCC--CCcccccceeEEEecCCcceeecc
Q psy11830          7 SLLDMKIVRTGLNHIPQ--FPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      +|..|+|++|+|..++.  ..++.+++|+.|+|++|+|+.+++
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~  213 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE  213 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh
Confidence            79999999999999985  566789999999999999998843

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=95.77  E-value=0.0074  Score=54.51  Aligned_cols=44  Identities=7%  Similarity=0.081  Sum_probs=33.7

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|+.+|  .++.+++|+.|+|++|+|+.+++  |.++
T Consensus        41 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l   84 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDL   84 (263)
T ss_dssp             TTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             CcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccC
Confidence            46778888888888887  46777888888888888888776  5444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.74  E-value=0.0069  Score=48.66  Aligned_cols=40  Identities=13%  Similarity=0.204  Sum_probs=36.9

Q ss_pred             cccceeeEEEccCccccCCCCCcccccceeEEEecCCcce
Q psy11830          4 YANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIK   43 (387)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~   43 (387)
                      +..+|++|+|++|+|+.||+..|..+.+|+.|+|++|.+.
T Consensus        29 lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4568999999999999999999999999999999999764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=95.71  E-value=0.0041  Score=57.12  Aligned_cols=44  Identities=18%  Similarity=0.148  Sum_probs=34.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|++..+  ..++.+++|+.|+|++|+|+.+++  +..+
T Consensus       134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l  177 (291)
T 1h6t_A          134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL  177 (291)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCC
Confidence            4688888888888888  367788888888888888888876  5444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=95.66  E-value=0.0075  Score=55.90  Aligned_cols=46  Identities=7%  Similarity=0.092  Sum_probs=34.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFN   51 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~   51 (387)
                      .+|++|++++|+++.+++..|..+++|+.|+|++|.|+.+++..+.
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  165 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence            3577777777777777777777778888888888888877766663

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=95.63  E-value=0.0055  Score=52.59  Aligned_cols=46  Identities=13%  Similarity=0.127  Sum_probs=30.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|++..++  .++.+++|+.|+|++|+++...+..|.++
T Consensus        66 ~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  111 (197)
T 4ezg_A           66 HNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGL  111 (197)
T ss_dssp             TTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred             CCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCC
Confidence            45677777777666664  45666777777777777776555556554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=95.63  E-value=0.0052  Score=56.84  Aligned_cols=44  Identities=7%  Similarity=0.068  Sum_probs=31.6

Q ss_pred             cceeeEEEccCccc-cCCCCCc-ccccceeEEEecCCcceeeccccc
Q psy11830          6 NSLLDMKIVRTGLN-HIPQFPV-SNDLVMEVIFLGYNNIKIIEGRAF   50 (387)
Q Consensus         6 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~l~l~~n~i~~~~~~~f   50 (387)
                      .+|++|++++|+++ .+|+..| ..+++|+.|+|++|+|+.+ +..|
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~  140 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL  140 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH
Confidence            56778888888887 4666554 7777888888888888777 4444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=95.61  E-value=0.0046  Score=57.35  Aligned_cols=47  Identities=17%  Similarity=0.202  Sum_probs=35.4

Q ss_pred             cceeeEEEccCcccc---CCCCCcccccceeEEEecC-CcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNH---IPQFPVSNDLVMEVIFLGY-NNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~l~~-n~i~~~~~~~f~~~   53 (387)
                      .++++|++++|++..   +| ..+.++++|+.|+|++ |.++...+..|..+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l  100 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKL  100 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGC
T ss_pred             ceEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcC
Confidence            468888888888884   54 4677888888888884 88887767777554

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=95.49  E-value=0.041  Score=49.92  Aligned_cols=44  Identities=34%  Similarity=0.431  Sum_probs=36.5

Q ss_pred             hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHH
Q psy11830         84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL  127 (387)
Q Consensus        84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii  127 (387)
                      +++.||.+++....++++.++....++.|||+||++.++.+...
T Consensus        24 ~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~~p~~   67 (296)
T 2lnl_A           24 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIW   67 (296)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence            36899999998877777778888999999999999988765443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=95.45  E-value=0.0044  Score=63.55  Aligned_cols=47  Identities=13%  Similarity=0.153  Sum_probs=34.8

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++|+++.+|+..|..+++|+.|+|++|+|+.+++..|.+.
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~  480 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE  480 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred             CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence            67777777777777777777777777777777777777777776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=95.40  E-value=0.006  Score=56.46  Aligned_cols=39  Identities=8%  Similarity=0.131  Sum_probs=21.8

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      +|++|++++|++..+|.  +..+++|+.|+|++|+++.+++
T Consensus       130 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~  168 (308)
T 1h6u_A          130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP  168 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh
Confidence            45555555555555554  5555555555555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.40  E-value=0.0058  Score=60.50  Aligned_cols=45  Identities=13%  Similarity=0.210  Sum_probs=33.8

Q ss_pred             cceeeEEEccCccccCCCCCcc-cccceeEEEecCCcceeeccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVS-NDLVMEVIFLGYNNIKIIEGRAF   50 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~~n~i~~~~~~~f   50 (387)
                      .+|..|++++|++..++...+. .+++|+.|+|++|.|+.+++..+
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~  189 (487)
T 3oja_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV  189 (487)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred             CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc
Confidence            4688888888888886655554 67888888888888888866554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=95.28  E-value=0.01  Score=54.81  Aligned_cols=46  Identities=4%  Similarity=0.033  Sum_probs=35.8

Q ss_pred             cceeeEEEccCccccCCCCCcccc---cceeEEEecCCcceeecccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSND---LVMEVIFLGYNNIKIIEGRAFN   51 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~l~~n~i~~~~~~~f~   51 (387)
                      .+|++|++++|+|..+.+..+..+   ++|+.|+|++|+|+.+++..+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~  272 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA  272 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCS
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcC
Confidence            578999999999999833333343   6999999999999998877663

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.28  E-value=0.017  Score=54.71  Aligned_cols=73  Identities=16%  Similarity=0.268  Sum_probs=43.1

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCchhhhH
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNTYYNFT   82 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~l   82 (387)
                      .+|..+++. ++++.|++..|.++.+|+.++|.+|.++.|++.+|.+.  .+|+....|+- ... +..+|..|..+-
T Consensus       263 ~~l~~i~l~-~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c--~~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          263 TALKTLNFY-AKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC--VKLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TTCCEEEEC-CCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC--TTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ehhcccccc-ccceeccccccccccccccccccccccceehhhhhcCC--CCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            356666663 45777777777777777777777777777777777775  33433322221 111 445565554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=95.25  E-value=0.0071  Score=55.93  Aligned_cols=40  Identities=8%  Similarity=0.187  Sum_probs=25.9

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|++|++++|+++.+|  .+..+++|+.|+|++|+|+.+++
T Consensus        85 ~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~  124 (308)
T 1h6u_A           85 TKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP  124 (308)
T ss_dssp             CSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGG
T ss_pred             CCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCCCCCchh
Confidence            35666777777776665  35666666666666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.24  E-value=0.011  Score=58.60  Aligned_cols=46  Identities=11%  Similarity=0.092  Sum_probs=41.0

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|..+|...|+.+++|+.|+|++|.|+.+.+  |.++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l   79 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL   79 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC
Confidence            379999999999999999999999999999999999998776  5554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=95.24  E-value=0.014  Score=49.88  Aligned_cols=39  Identities=8%  Similarity=0.099  Sum_probs=32.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      .+|++|++++|+|..+|  .+..+++|+.|+|++|.++.++
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~   82 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN   82 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG
T ss_pred             CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch
Confidence            46888999999999888  4778889999999999887765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=95.18  E-value=0.011  Score=60.46  Aligned_cols=42  Identities=17%  Similarity=0.358  Sum_probs=21.4

Q ss_pred             ceeeEEEccCccccCCCCCccccc-------ceeEEEecCCcceeeccc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDL-------VMEVIFLGYNNIKIIEGR   48 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~l~~n~i~~~~~~   48 (387)
                      +|++|++++|+|..+|+..|..+.       +|+.|+|++|+|+.+++.
T Consensus       458 ~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  506 (636)
T 4eco_A          458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD  506 (636)
T ss_dssp             CCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred             CCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence            455555555555555555544332       555555555555554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=95.15  E-value=0.0078  Score=63.98  Aligned_cols=51  Identities=14%  Similarity=0.191  Sum_probs=37.9

Q ss_pred             ceeeEEEccCccccCCC-CCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          7 SLLDMKIVRTGLNHIPQ-FPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      +|++|++++|++..||+ ..++++++|+.|+|++|+|+.++  .|..+  .+++.+
T Consensus       549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L--~~L~~L  600 (876)
T 4ecn_A          549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTN--VKLTDL  600 (876)
T ss_dssp             TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTT--SEESEE
T ss_pred             CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCC--CcceEE
Confidence            68888888888888876 56778888888888888888777  56554  444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=95.10  E-value=0.0092  Score=54.73  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      .+|++|++++|+|..++  .+..+++|+.|+|++|+|+.++
T Consensus       112 ~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~~  150 (291)
T 1h6t_A          112 KKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT  150 (291)
T ss_dssp             TTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG
T ss_pred             CCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcch
Confidence            57889999999999885  4778899999999999999883

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=95.08  E-value=0.018  Score=53.09  Aligned_cols=38  Identities=13%  Similarity=-0.104  Sum_probs=24.1

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCccee
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKI   44 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~   44 (387)
                      +|++|++++|++..+|...|+.+++|+.|||++|++..
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  183 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG  183 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc
Confidence            56666666666666666666666666666666666544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.07  E-value=0.015  Score=56.07  Aligned_cols=47  Identities=11%  Similarity=0.147  Sum_probs=33.0

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcce-----eeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIK-----IIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~-----~~~~~~f~~~   53 (387)
                      .+|+.+++ +|+++.|++..|.++.+|+.++|.+|.++     .|++.+|.++
T Consensus       248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c  299 (401)
T 4fdw_A          248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC  299 (401)
T ss_dssp             CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred             CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence            35666666 56677777777777777777777776665     6777777766

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.97  E-value=0.011  Score=56.96  Aligned_cols=80  Identities=15%  Similarity=0.199  Sum_probs=58.3

Q ss_pred             cceeeEEEccCccc-----cCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccCCCCCCCchhh
Q psy11830          6 NSLLDMKIVRTGLN-----HIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYN   80 (387)
Q Consensus         6 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~   80 (387)
                      .+|+++++.+|.+.     .|++..|.++.+|+.++|. |.++.|++.+|.++  .+++.+..++.--.=+.++|..| .
T Consensus       271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c--~~L~~l~lp~~l~~I~~~aF~~~-~  346 (401)
T 4fdw_A          271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN--RKVTQLTIPANVTQINFSAFNNT-G  346 (401)
T ss_dssp             TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC--CSCCEEEECTTCCEECTTSSSSS-C
T ss_pred             CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC--CCccEEEECccccEEcHHhCCCC-C
Confidence            57999999988877     8999999999999999999 56999999999986  44444433322111156788877 5


Q ss_pred             hHHhhhccC
Q psy11830         81 FTRLIFPGN   89 (387)
Q Consensus        81 ~l~~~~~gn   89 (387)
                      +-.+.+-||
T Consensus       347 L~~l~l~~n  355 (401)
T 4fdw_A          347 IKEVKVEGT  355 (401)
T ss_dssp             CCEEEECCS
T ss_pred             CCEEEEcCC
Confidence            444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=94.96  E-value=0.01  Score=55.46  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=19.3

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceee
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKII   45 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~   45 (387)
                      +|++|++++|+++.+|.  +..+++|+.|+|++|.++.+
T Consensus        67 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~  103 (347)
T 4fmz_A           67 NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI  103 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             CccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc
Confidence            45555555555555544  44555555555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=94.85  E-value=0.017  Score=58.75  Aligned_cols=40  Identities=18%  Similarity=0.111  Sum_probs=26.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|+.|++++|+|..+  ..++.+++|+.|+|++|+|+.+++
T Consensus       131 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          131 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            3566777777777766  345666677777777777766655

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=94.84  E-value=0.013  Score=61.24  Aligned_cols=94  Identities=13%  Similarity=0.109  Sum_probs=62.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCcc---ccCCCCCCCchhhhH
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQK---LNPRPSAYNTYYNFT   82 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~l   82 (387)
                      .+|++|++++|++....+..++++++|+.|||++|++++..+..|.++  ..++.+......   .-|+..+|..   +-
T Consensus       656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l--~~L~~L~ls~N~l~g~iP~~~~~~~---~~  730 (768)
T 3rgz_A          656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL--TMLTEIDLSNNNLSGPIPEMGQFET---FP  730 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC--CCCSEEECCSSEEEEECCSSSSGGG---SC
T ss_pred             ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC--CCCCEEECcCCcccccCCCchhhcc---CC
Confidence            468999999999997667889999999999999999999999998776  444444322221   2233333322   22


Q ss_pred             HhhhccCeeEEEeeeccCCCCC
Q psy11830         83 RLIFPGNAAVLAVTLSRTSEKS  104 (387)
Q Consensus        83 ~~~~~gn~~~~~~~~~~~~~~~  104 (387)
                      ...+.||.-.+-..+..|++..
T Consensus       731 ~~~~~gN~~Lcg~~l~~C~~~~  752 (768)
T 3rgz_A          731 PAKFLNNPGLCGYPLPRCDPSN  752 (768)
T ss_dssp             GGGGCSCTEEESTTSCCCCSCC
T ss_pred             HHHhcCCchhcCCCCcCCCCCc
Confidence            2357788765533233455444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=94.83  E-value=0.0053  Score=52.74  Aligned_cols=40  Identities=23%  Similarity=0.319  Sum_probs=30.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|++|++++|++..+|  .+.++++|+.|+|++|+|+.+++
T Consensus        48 ~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~   87 (198)
T 1ds9_A           48 KACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN   87 (198)
T ss_dssp             TTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS
T ss_pred             CCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc
Confidence            36777888888888877  67777788888888887776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=94.82  E-value=0.0078  Score=63.98  Aligned_cols=47  Identities=11%  Similarity=0.152  Sum_probs=35.8

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++|++..+|+..+..+++|+.|+|++|+|+.+++..|...
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~  720 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK  720 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence            67777777777777777777777778888888888887777777643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=94.69  E-value=0.014  Score=54.54  Aligned_cols=44  Identities=18%  Similarity=0.228  Sum_probs=38.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+++.+|  .+..+++|+.|+|++|+++.+++  +...
T Consensus        88 ~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~--~~~l  131 (347)
T 4fmz_A           88 VKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDISP--LANL  131 (347)
T ss_dssp             TTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTSCCCCCGG--GTTC
T ss_pred             CcCCEEEccCCcccCch--HHcCCCcCCEEECcCCcccCchh--hccC
Confidence            57999999999999987  48899999999999999999887  5444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=94.46  E-value=0.017  Score=58.47  Aligned_cols=37  Identities=16%  Similarity=0.219  Sum_probs=23.9

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      +|..|++++|+|+.||+    .+++|+.|+|++|+|+.+++
T Consensus       141 ~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~  177 (571)
T 3cvr_A          141 LLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE  177 (571)
T ss_dssp             TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred             cccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch
Confidence            46666666666666665    35566777777777766666

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=94.30  E-value=0.003  Score=54.35  Aligned_cols=40  Identities=18%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      .+|+.|++++|+|..+|+ .+..+++|+.|+|++|+|+.++
T Consensus        70 ~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~  109 (198)
T 1ds9_A           70 ENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS  109 (198)
T ss_dssp             TTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH
T ss_pred             CCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC
Confidence            467788888888888864 4556677888888888888775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=94.28  E-value=0.02  Score=58.55  Aligned_cols=17  Identities=6%  Similarity=0.124  Sum_probs=9.1

Q ss_pred             cceeEEEecCCcceeec
Q psy11830         30 LVMEVIFLGYNNIKIIE   46 (387)
Q Consensus        30 ~~~~~l~l~~n~i~~~~   46 (387)
                      ++|+.|+|++|.|+.++
T Consensus       221 ~~L~~L~Ls~N~L~~lp  237 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP  237 (622)
T ss_dssp             TTCCEEECCSSCCSCCC
T ss_pred             CCCCEEEccCCccCcCC
Confidence            44555555555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.18  E-value=0.039  Score=52.24  Aligned_cols=53  Identities=11%  Similarity=0.159  Sum_probs=39.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|+++++.+++++.|++..|.++.+|+.++|.+ .++.|++.+|.+.  ..|+..
T Consensus       286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C--~~L~~i  338 (379)
T 4h09_A          286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNC--KALSTI  338 (379)
T ss_dssp             TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTC--TTCCCC
T ss_pred             cccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCC--CCCCEE
Confidence            5677888887788888888888888888888864 4788888888776  444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=94.18  E-value=0.018  Score=56.38  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=24.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|++|++++|+++.+|+  +.++++|+.|+|++|+++.+++
T Consensus        68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~  107 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP  107 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh
Confidence            455666666666666654  5566666666666666665554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=94.05  E-value=0.038  Score=55.85  Aligned_cols=38  Identities=16%  Similarity=0.270  Sum_probs=26.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|.+|++++|+|+.+|+  +.  .+|+.|+|++|+|+.+++
T Consensus       160 ~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred             CCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence            466777777777777776  43  667777777777776666

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=93.97  E-value=0.021  Score=58.20  Aligned_cols=38  Identities=13%  Similarity=0.106  Sum_probs=21.9

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      +|++|++++|+|..+|  .+..+++|+.|+|++|+|+.++
T Consensus        88 ~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~  125 (605)
T 1m9s_A           88 NLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN  125 (605)
T ss_dssp             TCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCCG
T ss_pred             CCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCCc
Confidence            4566666666666655  3455555666666665555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.77  E-value=0.026  Score=53.96  Aligned_cols=46  Identities=20%  Similarity=0.321  Sum_probs=28.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|.++++ +++++.|++..|.++.+|+.++|.+ .++.|.+.+|.+.
T Consensus       288 ~~L~~i~l-~~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C  333 (394)
T 4gt6_A          288 PALQDIEF-SSRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGC  333 (394)
T ss_dssp             TTCCEEEC-CTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTC
T ss_pred             cccccccC-CCcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCC
Confidence            34555555 3556666666666666666666654 3666666666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=93.36  E-value=0.044  Score=53.64  Aligned_cols=39  Identities=10%  Similarity=0.206  Sum_probs=24.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      .+|++|++++|+++.+|  .+..+++|+.|+|++|+|+.++
T Consensus        42 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~   80 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD   80 (457)
T ss_dssp             TTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC
T ss_pred             CCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc
Confidence            35666666666666665  3556666666666666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=93.22  E-value=0.072  Score=54.37  Aligned_cols=38  Identities=11%  Similarity=0.146  Sum_probs=20.6

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|++|++++|+|+.||.    .+++|+.|+|++|+|+.+++
T Consensus        61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~   98 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV   98 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC
T ss_pred             CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC
Confidence            345555555555555554    34455555555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=93.13  E-value=0.047  Score=53.43  Aligned_cols=40  Identities=18%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|++|++++|+++.+|  .|+++++|+.|+|++|+++.+++
T Consensus       131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~  170 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPD  170 (454)
T ss_dssp             TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCC
T ss_pred             CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCC
Confidence            46777777777777777  37777788888888887777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=93.11  E-value=0.05  Score=53.26  Aligned_cols=41  Identities=12%  Similarity=0.066  Sum_probs=19.6

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAF   50 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f   50 (387)
                      +|++|++++|+++.+|   +..+++|+.|+|++|+++.++...+
T Consensus       213 ~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l  253 (457)
T 3bz5_A          213 QLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTL  253 (457)
T ss_dssp             TCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred             CCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHC
Confidence            3444445555554444   4444445555555555554444333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=93.11  E-value=0.044  Score=53.56  Aligned_cols=44  Identities=16%  Similarity=0.171  Sum_probs=39.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .++++|++.+++++.+|.  +..+++|+.|+|++|+++.+++  |.++
T Consensus        46 ~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l   89 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNL   89 (466)
T ss_dssp             HTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             ccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhcc
Confidence            578999999999999985  7889999999999999999987  6555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.05  E-value=0.073  Score=50.77  Aligned_cols=71  Identities=21%  Similarity=0.296  Sum_probs=48.1

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCchhhh
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNTYYNF   81 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~   81 (387)
                      .+|.++++.+ +++.|++..|.++.+|+.++|.+ .++.|++.+|.+.  ..|+....|.- ... +.++|..|..+
T Consensus       297 ~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c--~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          297 SSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGC--TSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTCCEEEECT-TCCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC--TTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccc-ccceechhhhcCCCCCCEEEeCC-cccEEhHHhccCC--CCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            5677888754 48888888888888888888864 4888888888886  44444433321 111 55667766543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.52  E-value=0.11  Score=49.66  Aligned_cols=46  Identities=24%  Similarity=0.411  Sum_probs=35.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|+++++. ++++.|++..|.++.+|+.++|.+| ++.|++.+|.+.
T Consensus        71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c  116 (394)
T 4fs7_A           71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGC  116 (394)
T ss_dssp             TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred             CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhccc
Confidence            467778775 4588888888888888888888644 788888888776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=92.21  E-value=0.072  Score=52.06  Aligned_cols=40  Identities=20%  Similarity=0.242  Sum_probs=29.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|++|++++|+++.+|+  +..+++|+.|+|++|+++.+++
T Consensus       215 ~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          215 LSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCS
T ss_pred             CcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcccc
Confidence            367777777777777774  6777777777777777777664

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=91.88  E-value=0.03  Score=55.68  Aligned_cols=63  Identities=17%  Similarity=0.152  Sum_probs=46.4

Q ss_pred             hhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhccccccchhhchhhhhhhcc
Q psy11830         85 IFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGN  149 (387)
Q Consensus        85 ~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN  149 (387)
                      ++.||.+|++...+.++.++...+++.|||+||+++++......+..  ..+.|......|.++.
T Consensus        77 g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~--~~~~~~~~~~~c~~~~  139 (520)
T 3v2y_A           77 IILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS--GATTYKLTPAQWFLRE  139 (520)
T ss_dssp             HHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS--GGGGTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc--cccceeeCccccchHH
Confidence            68999999988777777778888999999999999998876665544  2333444445555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=91.23  E-value=0.039  Score=51.98  Aligned_cols=47  Identities=11%  Similarity=0.132  Sum_probs=39.2

Q ss_pred             cceeeEEEccCccccCCC----CCccccc-ceeEEEecCCcceeeccccccC
Q psy11830          6 NSLLDMKIVRTGLNHIPQ----FPVSNDL-VMEVIFLGYNNIKIIEGRAFNG   52 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~l~l~~n~i~~~~~~~f~~   52 (387)
                      ++|++||+++|+|+.++.    ..+..++ +|+.|+|++|+|+......+.+
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~   73 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ   73 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH
Confidence            458999999999999887    7777887 8999999999998887776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.42  E-value=0.29  Score=46.56  Aligned_cols=47  Identities=19%  Similarity=0.147  Sum_probs=41.1

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCc---ceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNN---IKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~---i~~~~~~~f~~~   53 (387)
                      ++|+...+. ++++.|++..|.++.+|+.+.++.|.   ++.|.+.+|.+.
T Consensus        64 ~~L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c  113 (394)
T 4gt6_A           64 YVLTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC  113 (394)
T ss_dssp             SCCCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTC
T ss_pred             CcCEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhc
Confidence            458888885 56999999999999999999998765   999999999886

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=87.37  E-value=0.096  Score=49.28  Aligned_cols=46  Identities=9%  Similarity=0.000  Sum_probs=36.5

Q ss_pred             ceeeEEEccCccccCCCCCcccc-----cceeEEEecCCcceeeccccccC
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSND-----LVMEVIFLGYNNIKIIEGRAFNG   52 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~l~~n~i~~~~~~~f~~   52 (387)
                      +|++|++++|+|...+...+..+     .+|+.|+|++|+|+......+.+
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            78888888888888877777776     78888888888888777665433

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=86.97  E-value=1.6  Score=41.76  Aligned_cols=47  Identities=21%  Similarity=0.289  Sum_probs=36.6

Q ss_pred             hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhc
Q psy11830         84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVK  130 (387)
Q Consensus        84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~  130 (387)
                      ++++||.+++....+.++.++....++.|||++|++.++......+.
T Consensus        36 ~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~   82 (467)
T 3uon_A           36 VTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTL   82 (467)
T ss_dssp             HHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999998776666656778889999999999987766554433

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=86.68  E-value=0.83  Score=34.50  Aligned_cols=39  Identities=15%  Similarity=0.180  Sum_probs=35.6

Q ss_pred             ccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830         14 VRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      ++.+++.|.+..|.+..+|+.+.|.. .++.|.+.+|.+.
T Consensus         4 ~g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C   42 (100)
T 2lz0_A            4 EGEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGC   42 (100)
T ss_dssp             CCCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTC
T ss_pred             CCCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhcc
Confidence            56789999999999999999999976 5899999999997

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=85.13  E-value=2  Score=41.19  Aligned_cols=46  Identities=28%  Similarity=0.375  Sum_probs=37.0

Q ss_pred             hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhh
Q psy11830         84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAV  129 (387)
Q Consensus        84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~  129 (387)
                      ++++||.+++....+.++.++...+++.|||++|+++++......+
T Consensus        51 ~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~   96 (481)
T 3pbl_A           51 AIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVV   96 (481)
T ss_dssp             HHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999998877776666777888999999999999877655444

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=85.05  E-value=0.12  Score=51.05  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             hhccCeeEEEeeeccCCCC---CcchhhhhhhhHHHHHHHHHHHHHhhc
Q psy11830         85 IFPGNAAVLAVTLSRTSEK---SVPRFLISHLAMADLCMAFYLLLLAVK  130 (387)
Q Consensus        85 ~~~gn~~~~~~~~~~~~~~---~~~~~~~~~l~~ad~~~~~~~~ii~~~  130 (387)
                      +++||.+|++...+.++.+   +...+++.|||+||++++++.+.+.+.
T Consensus        46 g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~   94 (510)
T 4grv_A           46 GTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELY   94 (510)
T ss_dssp             HHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999988766554333   355689999999999988887655544

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=85.00  E-value=0.96  Score=43.21  Aligned_cols=41  Identities=29%  Similarity=0.254  Sum_probs=34.0

Q ss_pred             hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830         84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL  124 (387)
Q Consensus        84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~  124 (387)
                      ++++||.+++....+.++.++...+++.|||++|+++++.+
T Consensus        30 ~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~   70 (464)
T 4dkl_A           30 VGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTL   70 (464)
T ss_dssp             HHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            36899999988877766666778889999999999888764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=83.00  E-value=0.16  Score=48.11  Aligned_cols=41  Identities=7%  Similarity=-0.014  Sum_probs=21.9

Q ss_pred             cceeeEEEccCcccc-----CCCCCcccccceeEEEecCCcceeec
Q psy11830          6 NSLLDMKIVRTGLNH-----IPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      .+|+.|++++|+|..     +|+..+.++++|+.|+|++|.++...
T Consensus       274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            345555555555555     55544445555555555555555444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=82.98  E-value=0.14  Score=47.16  Aligned_cols=48  Identities=6%  Similarity=0.063  Sum_probs=37.3

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceee-ccccccCc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKII-EGRAFNGS   53 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~-~~~~f~~~   53 (387)
                      ..+++.|++.+|++...+...+ .+++|+.|+|++|.++.. -+..+...
T Consensus        69 ~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~  117 (336)
T 2ast_B           69 SQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQC  117 (336)
T ss_dssp             HTTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred             hccceEEEcCCccccccchhhc-cCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence            3678999999999999987755 689999999999988754 33344443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=82.70  E-value=0.56  Score=42.30  Aligned_cols=37  Identities=14%  Similarity=0.113  Sum_probs=30.6

Q ss_pred             cceeeEEEccCccccCCCCCccccc--ceeEEEecCCccee
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDL--VMEVIFLGYNNIKI   44 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~l~~n~i~~   44 (387)
                      .+|..|+|++|+|+.+++  +..+.  +|+.|+|++|.+..
T Consensus       196 ~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          196 PNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             TTCCEEECTTSCCCSGGG--GGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCCEEECCCCccCCchh--hhhcccCCcceEEccCCcCcc
Confidence            579999999999999843  33344  99999999999975

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=81.94  E-value=0.25  Score=48.11  Aligned_cols=41  Identities=27%  Similarity=0.238  Sum_probs=33.4

Q ss_pred             hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830         84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL  124 (387)
Q Consensus        84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~  124 (387)
                      ++++||.+++....+.++.++...+++.|||++|+++++.+
T Consensus        61 ~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~  101 (502)
T 3odu_A           61 TGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITL  101 (502)
T ss_dssp             HHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            36899999998877766667788889999999999886543

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=81.24  E-value=0.26  Score=47.18  Aligned_cols=47  Identities=21%  Similarity=0.212  Sum_probs=37.5

Q ss_pred             hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhc
Q psy11830         84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVK  130 (387)
Q Consensus        84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~  130 (387)
                      ++++||.++++...+.++.++....++.|||++|++.++......+.
T Consensus        21 ~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~   67 (452)
T 3rze_A           21 VTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNIL   67 (452)
T ss_dssp             HHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999998777766667788899999999999987766555444

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=80.56  E-value=0.18  Score=49.53  Aligned_cols=47  Identities=26%  Similarity=0.364  Sum_probs=36.8

Q ss_pred             hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhc
Q psy11830         84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVK  130 (387)
Q Consensus        84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~  130 (387)
                      ++++||.++++...+.++.++...+++.|||+||+++++..+...+.
T Consensus        53 ~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~   99 (500)
T 2rh1_A           53 AIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA   99 (500)
T ss_dssp             HHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999998776666666778899999999999998765544433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=80.28  E-value=0.52  Score=43.24  Aligned_cols=39  Identities=3%  Similarity=-0.174  Sum_probs=19.4

Q ss_pred             eeeEEEccCccccCCCCCcccc--cceeEEEecCCcceeecccc
Q psy11830          8 LLDMKIVRTGLNHIPQFPVSND--LVMEVIFLGYNNIKIIEGRA   49 (387)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~~n~i~~~~~~~   49 (387)
                      ++.+|+++|++.   +..+..+  .+++.|+|++|.++...+..
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~   89 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH   89 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh
Confidence            445555555443   2333344  45555555555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	387
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	0.001

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 29/267 (10%), Positives = 71/267 (26%), Gaps = 18/267 (6%)

Query: 84  LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAY 143
           L FP N   L VT+     ++   +++ +LA+ADL M F      +         F    
Sbjct: 50  LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG 109

Query: 144 DWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAY 203
              +G  A L   ++  S                  +A    ++  K + +     N+A 
Sbjct: 110 CNLEGFFATLGGEIALWSLV---------------VLAIERYVVVCKPMSNFRFGENHAI 154

Query: 204 DWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYV 263
                                S +    +                        F++   +
Sbjct: 155 MGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFII 214

Query: 264 YASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQI--- 320
              ++       + +    +           ++  V  +++   + F +  + Y  +   
Sbjct: 215 PLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFY 274

Query: 321 YSSLGNVLTADLLFLITGISSYSTTSI 347
             +        +   I    + ++   
Sbjct: 275 IFTHQGSDFGPIFMTIPAFFAKTSAVY 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.18
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.0
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.96
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.48
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.35
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.3
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.29
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.2
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.14
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.12
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.09
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.55
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.53
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	95.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	95.6
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	95.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.29
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.07
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	94.92
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.3
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	94.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	92.56
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	91.79
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	89.24

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=6.3e-24  Score=200.37  Aligned_cols=191  Identities=19%  Similarity=0.312  Sum_probs=149.8

Q ss_pred             HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830        118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV  197 (387)
Q Consensus       118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~  197 (387)
                      .+.+.++.++++.|+              +||+++++++.++|++|++.|+++.|||++|++.++...|..+.....   
T Consensus        38 ~~~~~~~~ii~v~gi--------------~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~---  100 (348)
T d1u19a_          38 SMLAAYMFLLIMLGF--------------PINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH---  100 (348)
T ss_dssp             HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHH--------------HHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhcc---
Confidence            456677777777887              999999999999999999999999999999999999988887755443   


Q ss_pred             eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhee
Q psy11830        198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGI  276 (387)
Q Consensus       198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~  276 (387)
                           +.|..+ ..|+...++...+..+|+++++++++|||.+|++|++++..++++....+..+|..+.++..+|.++.
T Consensus       101 -----~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (348)
T d1u19a_         101 -----GYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGW  175 (348)
T ss_dssp             -----TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHSGGGTTS
T ss_pred             -----CccccCchhhhhhhhccccceeeecchhhhhhcccceeeeccccccccccccccccceeeehhhhheeccccccc
Confidence                 257777 88999999999999999999999999999999999998877777888888888988888887887754


Q ss_pred             ccc---CCceeeeccC---cCcccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830        277 SSY---STTSICLPMD---TRHLGSKIYVHTL-LLFSSLVFAMICVCYFQIYSSLGNVLTA  330 (387)
Q Consensus       277 ~~~---~~~~~C~~~~---~~~~~~~~~~~~~-~~~~~iPl~ii~~~Y~~I~~~lr~~~~~  330 (387)
                      ...   .....|....   ........+.... .+.+++|++++.++|.++.+++|++.++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~  236 (348)
T d1u19a_         176 SRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ  236 (348)
T ss_dssp             SCCEEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCS
T ss_pred             ceeccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence            432   2233343222   1222233333333 3445899999999999998888876653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.18  E-value=4.6e-07  Score=76.56  Aligned_cols=47  Identities=26%  Similarity=0.355  Sum_probs=26.9

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++|++..++...|..+.+|+.|+|++|+|+++++.+|.++
T Consensus        55 ~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l  101 (192)
T d1w8aa_          55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL  101 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred             eEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCC
Confidence            45555555555555555555555555555555555555555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.06  E-value=1.1e-06  Score=74.25  Aligned_cols=54  Identities=11%  Similarity=0.114  Sum_probs=48.9

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|.+|++++|+|++||+..|+++++|++|+|++|+|+.+++.+|.+.  .+++.+
T Consensus        78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l--~~L~~l  131 (192)
T d1w8aa_          78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL--NSLTSL  131 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC--TTCCEE
T ss_pred             cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCC--cccccc
Confidence            579999999999999999999999999999999999999999999887  444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.6e-06  Score=70.77  Aligned_cols=54  Identities=11%  Similarity=0.155  Sum_probs=43.1

Q ss_pred             cceeeEEEccC-ccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRT-GLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++++| .|+.|+...|.++++|+.|+|++|+|++|++.+|.+.  .+++.+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l--~~L~~L   85 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT--PRLSRL   85 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC--SCCCEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccc--ccccce
Confidence            56788888765 5888888888888888888888888888888888876  444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.6e-06  Score=70.83  Aligned_cols=53  Identities=15%  Similarity=0.324  Sum_probs=47.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKF   58 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~   58 (387)
                      .+|++|++++|+|++|++..|.++++|+.|||++|+|+.+++..|...++..+
T Consensus        56 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L  108 (156)
T d2ifga3          56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL  108 (156)
T ss_dssp             CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEE
T ss_pred             cccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccccccc
Confidence            47999999999999999999999999999999999999999999976644443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=8.9e-06  Score=63.43  Aligned_cols=41  Identities=15%  Similarity=0.285  Sum_probs=33.8

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|++|++++|+|+.+|+ .++.+++|+.|+|++|.|+.+++
T Consensus        20 ~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~   60 (124)
T d1dcea3          20 LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG   60 (124)
T ss_dssp             TTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCEEECCCCccCcchh-hhhhhhcccccccccccccccCc
Confidence            468888888888888875 47788888888888888888864

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.3e-05  Score=68.68  Aligned_cols=57  Identities=19%  Similarity=0.212  Sum_probs=43.6

Q ss_pred             cccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccC
Q psy11830          4 YANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKI   62 (387)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~   62 (387)
                      +..+|..+++++|+|+.||+..|+++.+|+.|+|++|+++++++.+|.+.  .+++.+.
T Consensus       127 ~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l--~~L~~l~  183 (284)
T d1ozna_         127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL--HSLDRLL  183 (284)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC--TTCCEEE
T ss_pred             hhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc--cccchhh
Confidence            34667888888888888888888888888888888888888888888776  4444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.48  E-value=4.5e-05  Score=68.40  Aligned_cols=54  Identities=17%  Similarity=0.088  Sum_probs=47.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .++++|++++|+|++||+..|.++++|+.|++++|++..+++.+|..+  .+++.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l--~~L~~L   84 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL--VKLERL   84 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC--TTCCEE
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCC--CccCEe
Confidence            568999999999999999999999999999999999999999999876  444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=2.7e-05  Score=63.52  Aligned_cols=50  Identities=12%  Similarity=0.068  Sum_probs=40.5

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+++||+++|+|..|| +.+..+++|+.|||++|+|+.+++  |..+  .+++.+
T Consensus        19 ~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l--~~L~~L   68 (162)
T d1a9na_          19 RDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLL--RRLKTL   68 (162)
T ss_dssp             SCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEECC--CCCC--SSCCEE
T ss_pred             cCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccCC--cccC--cchhhh
Confidence            5789999999999996 678889999999999999999964  5444  444444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=6.3e-05  Score=67.40  Aligned_cols=47  Identities=21%  Similarity=0.394  Sum_probs=33.9

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|+.||+ .+.++++|+.|+|++|+|+++++.+|...
T Consensus       219 ~~L~~L~L~~N~L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         219 PHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             TTCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             ccceeeeccccccccccc-ccccccCCCEEECCCCccCccChhhccCc
Confidence            467777777777777765 46667777777777777777777777543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=8.1e-05  Score=65.51  Aligned_cols=47  Identities=19%  Similarity=0.270  Sum_probs=25.9

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      ++.+|++++|++..+|+..|..+.+++.+++++|+|+.+++..|.++
T Consensus       125 ~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l  171 (266)
T d1p9ag_         125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL  171 (266)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred             ccccccccccccceeccccccccccchhcccccccccccCccccccc
Confidence            44555555555555555555555555555555555555555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=3.4e-05  Score=68.63  Aligned_cols=54  Identities=11%  Similarity=0.247  Sum_probs=48.2

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      .+|++|++.+|+++.+|+..|.++++|+.++|++|+++.+++..|.+.  .+++.+
T Consensus       153 ~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l--~~L~~L  206 (284)
T d1ozna_         153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL--GRLMTL  206 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC--TTCCEE
T ss_pred             cchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhh--hhcccc
Confidence            578999999999999999999999999999999999999999999876  444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=9.8e-05  Score=63.64  Aligned_cols=49  Identities=8%  Similarity=0.061  Sum_probs=37.9

Q ss_pred             EEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830         11 MKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK   61 (387)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~   61 (387)
                      +++++|+|++||+..|.++++|+.|||++|+|+.+++..|.++  .+++.+
T Consensus       182 ~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l--~~L~~l  230 (242)
T d1xwdc1         182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL--KKLRAR  230 (242)
T ss_dssp             ECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC--CEEESS
T ss_pred             ccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC--cccccC
Confidence            3567788888888888888888888888888888888888776  444433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=8.8e-05  Score=60.38  Aligned_cols=46  Identities=7%  Similarity=0.031  Sum_probs=40.0

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|+.|++++|+|+.++.  |+.+++|+.|+|++|+|+.+++..|...
T Consensus        41 ~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_          41 DQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             TCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             ccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCccccccc
Confidence            578999999999999963  7889999999999999999998877554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00012  Score=62.97  Aligned_cols=48  Identities=23%  Similarity=0.230  Sum_probs=43.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCccee-eccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKI-IEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~-~~~~~f~~~   53 (387)
                      .++++||+++|+|+.||+..|.++++|++|+|++|.+.. +++.+|.+.
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l   77 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL   77 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESC
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccc
Confidence            478999999999999999999999999999999999864 788888776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00015  Score=63.65  Aligned_cols=44  Identities=16%  Similarity=0.244  Sum_probs=21.9

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAF   50 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f   50 (387)
                      +|.++++++|+|+.+|...|..+.+|+.|||++|+|+.+++..|
T Consensus       149 ~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~  192 (266)
T d1p9ag_         149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF  192 (266)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cchhcccccccccccCccccccccccceeecccCCCcccChhHC
Confidence            34445555555555555555555555555555555555544444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.00016  Score=56.00  Aligned_cols=46  Identities=13%  Similarity=0.181  Sum_probs=39.7

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc-ccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG-RAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~-~~f~~~   53 (387)
                      .+|++|++++|+|+.+|.  +..+++|+.+++++|+|+.+++ ..+...
T Consensus        43 ~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~~   89 (124)
T d1dcea3          43 RCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSC   89 (124)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred             hcccccccccccccccCc--cccccccCeEECCCCccCCCCCchhhcCC
Confidence            579999999999999974  8899999999999999999886 445444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00028  Score=57.19  Aligned_cols=48  Identities=15%  Similarity=0.121  Sum_probs=41.5

Q ss_pred             cceeeEEEccCccccCCC--CCcccccceeEEEecCCcceeeccccccCc
Q psy11830          6 NSLLDMKIVRTGLNHIPQ--FPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      .+|++|++++|+|+.++.  ..+..+++|+.|||++|+|+.+++..+.+.
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~  114 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG  114 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhc
Confidence            479999999999999974  557789999999999999999998777554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.53  E-value=0.00054  Score=58.32  Aligned_cols=39  Identities=15%  Similarity=0.126  Sum_probs=23.4

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      +|++|++.+|++..++.  ++++++|+.|||++|+++.+++
T Consensus       152 ~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~  190 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP  190 (227)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             ccccccccccccccchh--hcccccceecccCCCccCCChh
Confidence            46666666666655443  5556666666666666666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.00  E-value=0.0016  Score=54.76  Aligned_cols=39  Identities=13%  Similarity=0.233  Sum_probs=29.5

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      .+|+++++++|++.+++.  ++++++|+.|+|++|+|+.++
T Consensus       156 ~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred             cccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh
Confidence            467778888888877764  677788888888888887775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.93  E-value=0.0018  Score=58.87  Aligned_cols=40  Identities=15%  Similarity=0.262  Sum_probs=30.9

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      ..++..|++++|+|..+++  +..+++|+.|+|++|.|+.++
T Consensus       306 ~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~  345 (384)
T d2omza2         306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS  345 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             hcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh
Confidence            3567788888888888764  677788888888888888776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.86  E-value=0.0024  Score=56.76  Aligned_cols=40  Identities=15%  Similarity=0.292  Sum_probs=29.8

Q ss_pred             cceeeEEEccCccc-cCCCCCcccccceeEEEecCCcce-eec
Q psy11830          6 NSLLDMKIVRTGLN-HIPQFPVSNDLVMEVIFLGYNNIK-IIE   46 (387)
Q Consensus         6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~n~i~-~~~   46 (387)
                      .+|++|++++|+++ .+|+ .+.++++|+.|||++|+++ .+|
T Consensus       244 ~~L~~L~Ls~N~l~g~iP~-~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         244 KNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             TTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccccccCccCeecccCCh-HHhCCCCCCEEECcCCcccccCC
Confidence            56778888888887 5665 3677888888888888887 344

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.80  E-value=0.0015  Score=58.27  Aligned_cols=46  Identities=13%  Similarity=0.066  Sum_probs=27.8

Q ss_pred             ceeeEEEcc-Cccc-cCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830          7 SLLDMKIVR-TGLN-HIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS   53 (387)
Q Consensus         7 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~   53 (387)
                      +|++|++++ |++. .||+. ++++++|+.|||++|+|+.+++..+...
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~  124 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             cccccccccccccccccccc-cccccccchhhhccccccccccccccch
Confidence            566666654 5555 45543 5566666666666666666666666544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.60  E-value=0.0033  Score=57.07  Aligned_cols=39  Identities=23%  Similarity=0.283  Sum_probs=21.7

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      .+|++|++++|+|+.+|+  ++++++|+.|+|++|+|+.++
T Consensus        66 ~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~  104 (384)
T d2omza2          66 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT  104 (384)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc
Confidence            445555555555555553  555555555555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=95.41  E-value=0.0013  Score=54.98  Aligned_cols=40  Identities=23%  Similarity=0.317  Sum_probs=32.7

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|++|++++|+|+.|+.  ++.+++|+.|+|++|.|+.+++
T Consensus        48 ~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~   87 (198)
T d1m9la_          48 KACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIEN   87 (198)
T ss_dssp             TTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSS
T ss_pred             cccceeECcccCCCCccc--ccCCccccChhhcccccccccc
Confidence            467888888888888863  7788889999999988888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.29  E-value=0.0055  Score=51.22  Aligned_cols=38  Identities=18%  Similarity=0.244  Sum_probs=18.5

Q ss_pred             ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830          7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE   46 (387)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~   46 (387)
                      +|++|++++|+|+.++.  ++.+++|+.|+|++|+|+.++
T Consensus        69 ~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~  106 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS  106 (210)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG
T ss_pred             CCCEEeCCCccccCccc--cccCccccccccccccccccc
Confidence            44555555555554442  344445555555555554443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.07  E-value=0.0066  Score=50.21  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=28.3

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .++++|++++|+|+.++.  .+.+++|+.|+|++|+|+.+++
T Consensus        40 ~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~   79 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP   79 (199)
T ss_dssp             TTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             cCCCEEECCCCCCCCccc--cccCCCcCcCccccccccCccc
Confidence            466777777777777753  4567777777777777777665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.92  E-value=0.0062  Score=50.37  Aligned_cols=41  Identities=22%  Similarity=0.246  Sum_probs=37.3

Q ss_pred             ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      ..+|++|++++|+|+.++.  ++++++|+.|++++|.+..+++
T Consensus        61 l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~  101 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP  101 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCcCcCccccccccCccc--ccCCcccccccccccccccccc
Confidence            3689999999999999975  8899999999999999999885

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.73  E-value=0.0086  Score=53.26  Aligned_cols=39  Identities=13%  Similarity=0.303  Sum_probs=33.6

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR   48 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~   48 (387)
                      +++++||+++|+++.+|+.    .++|+.|+|++|+|+.+|+.
T Consensus        38 ~~l~~LdLs~~~L~~lp~~----~~~L~~L~Ls~N~l~~lp~~   76 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPEL   76 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC----CTTCSEEECCSSCCSSCCCC
T ss_pred             cCCCEEEeCCCCCCCCCCC----CCCCCEEECCCCCCcccccc
Confidence            6789999999999999953    46899999999999999753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.30  E-value=0.018  Score=51.05  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=33.1

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|++|++++|+|.+||+    .+++|+.|+|++|+|+.+++
T Consensus       284 ~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~  321 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE  321 (353)
T ss_dssp             TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred             CCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCcccc
Confidence            579999999999999985    46789999999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.26  E-value=0.014  Score=49.00  Aligned_cols=40  Identities=18%  Similarity=0.116  Sum_probs=35.4

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      ++|++|++.+|+|+.++.  ++.+++|+.|+|++|+|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~ls~n~i~~~~~   80 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP   80 (227)
T ss_dssp             HTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCcCEEECCCCCCCcchh--HhcCCCCcEeecCCceeecccc
Confidence            578999999999999953  7899999999999999998875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=92.56  E-value=0.0057  Score=50.79  Aligned_cols=52  Identities=12%  Similarity=0.204  Sum_probs=39.9

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc-ccccCccccccccc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG-RAFNGSQISKFVSK   61 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~-~~f~~~~~~~~~~~   61 (387)
                      .+|.+|++++|+|+.++  .+..+++|+.|+|++|+|+.+++ ..+.++  .+++.+
T Consensus        93 ~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l--~~L~~L  145 (198)
T d1m9la_          93 DTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAAL--DKLEDL  145 (198)
T ss_dssp             HHCCEEECSEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTT--TTCSEE
T ss_pred             ccccccccccccccccc--cccccccccccccccchhccccccccccCC--Ccccee
Confidence            46889999999999885  37788999999999999998876 345554  444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.0078  Score=48.16  Aligned_cols=42  Identities=14%  Similarity=0.123  Sum_probs=37.6

Q ss_pred             cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830          6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG   47 (387)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~   47 (387)
                      .+|+.|++++|+|+.+++..+....+|+.|+|++|.+.....
T Consensus        91 ~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          91 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             TTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             CcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            579999999999999999888888899999999999987644

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.24  E-value=0.11  Score=45.58  Aligned_cols=47  Identities=30%  Similarity=0.347  Sum_probs=36.6

Q ss_pred             hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhc
Q psy11830         84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVK  130 (387)
Q Consensus        84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~  130 (387)
                      +++.||.+++....++++.++....++.|||+||++.++......+.
T Consensus        50 ~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~   96 (348)
T d1u19a_          50 LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLY   96 (348)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            36899999988877766666777889999999999987766554433