Psyllid ID: psy11834

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQYVWRY
Secondary Structure (PSIPRED)
cccccEEEEEEEccccEEEEEEEEEEEccEEEcEEEEEEcEEEEEEcEEEEEEEEEEEEEEEEEEEcccccccEEEEEEcccEEEEccccccccEEEEEEEcccccccEEEEEEcccccccccHHHHHHHHHHcccccccccccEEEccEEEccccccccEEEEEEEEEEcccccccccccccccEEEEEEcHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccccccEEEEEEEEEEcccEEEEEccccHHHHEccccEEEEEEEccccEEEEEEEccccccEEEEEEEEccccHcccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHcccccHHHHHHHHEEEccccccccEEEEEEEEEccHHcccccccccccEEEEEEEcHHHHHHHHHcccccccHHHHHHHHHHHHcccccEEEEc
Coil and Loop (DISEMBL)
MNKITEAQIIEtqssqfiqpySVKFVQEALIKEnqychpqflitqhKDYYIVMNKITEAQIIEtrssqfiqpySVKFVQVLLSVYINsipeedrtgsidvtkypaelgVTLEFCAGIVDKNKSLAEIAREEVLEecgydvpveKLEKIQTFrsgvgsagdrqtLFFVEVTDdmkvnsgggvdeELIEVVEMGLEEAREYLaqdevrspsgfLFAMHWFLAAKAGQYVWRY
Flexible Loop (DISEMBL)
mnkiteaqiietqssqfiqpySVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSipeedrtgsidVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQtfrsgvgsagdrQTLFFVEVTddmkvnsgggvdeeLIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQYVWRY
Low Complexity Region (SEG)
MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQYVWRY
Disordered region (IsUnstruct)
**************SQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQYVW**
Disordered Region (DISOPRED)
**KITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKV****GVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAG******
Disordered Region (DISEMBL)
MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQYVWRY
Disordered Region (DISPRO)
**KITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPE*DRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQYVWRY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQYVWRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
O95848	222	Uridine diphosphate gluco	yes	N/A	0.9	0.932	0.305	1e-22
Q05B60	222	Uridine diphosphate gluco	yes	N/A	0.926	0.959	0.296	9e-22
Q9D142	222	Uridine diphosphate gluco	yes	N/A	0.9	0.932	0.283	1e-19
A7ML00	191	GDP-mannose pyrophosphata	yes	N/A	0.473	0.570	0.357	3e-08
A6TC90	198	GDP-mannose pyrophosphata	yes	N/A	0.443	0.515	0.364	8e-08
Q6D8X4	193	GDP-mannose pyrophosphata	yes	N/A	0.478	0.569	0.330	1e-07
A8ADC6	191	GDP-mannose pyrophosphata	yes	N/A	0.456	0.549	0.333	3e-07
Q32DA4	191	GDP-mannose pyrophosphata	yes	N/A	0.456	0.549	0.324	4e-07
Q8XBE7	191	GDP-mannose pyrophosphata	N/A	N/A	0.456	0.549	0.324	4e-07
Q83K58	191	GDP-mannose pyrophosphata	yes	N/A	0.456	0.549	0.324	4e-07

>sp|O95848|NUD14_HUMAN Uridine diphosphate glucose pyrophosphatase OS=Homo sapiens GN=NUDT14 PE=1 SV=2

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 19/226 (8%)

Query: 1   MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQ 60
           M +I  A +    +S +++P ++ + Q    K        F+ T      ++ N    + 
Sbjct: 1   MERIEGASVGRCAASPYLRPLTLHYRQNGAQKSWD-----FMKTHDSVTVLLFNSSRRSL 55

Query: 61  II--ETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDV-TKYPAELGVTLEFCAGI 117
           ++  + R + +      +F   L +V        D+ G  ++    P   GVT+E CAG+
Sbjct: 56  VLVKQFRPAVYAGEVERRFPGSLAAV--------DQDGPRELQPALPGSAGVTVELCAGL 107

Query: 118 VDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVN 176
           VD+   SL E+A +E  EECGY +    L ++ T+ SGVG  G RQT+F+ EVTD  +  
Sbjct: 108 VDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSG 167

Query: 177 SGGGVDE--ELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLA 220
            GGG+ E  ELIEVV + LE A+ +    ++    G +F + WFL+
Sbjct: 168 PGGGLVEEGELIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSWFLS 213

Hydrolyzes UDP-glucose to glucose 1-phosphate and UMP and ADP-ribose to ribose 5-phosphate and AMP. The physiological substrate is probably UDP-glucose. Poor activity on other substrates such as ADP-glucose, CDP-glucose, GDP-glucose and GDP-mannose.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 4EC: 5

>sp|Q05B60|NUD14_BOVIN Uridine diphosphate glucose pyrophosphatase OS=Bos taurus GN=NUDT14 PE=2 SV=1

 Score =  103 bits (257), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 1   MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQ 60
           M +I    +    +S ++ P ++ + Q    K   +      +  H    I+M   +   
Sbjct: 1   MERIEGVAVGRCAASPYLVPLTLHYRQNGAQKSWDF------MKTHDSVTILMFNSSRRS 54

Query: 61  IIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDK 120
           ++  +  QF        V+ L    + +  E+DR  ++     P   GVT E CAG++D+
Sbjct: 55  LVLVK--QFRPAVYAGEVERLFPGSLAAA-EQDRPQALQAA-LPGSAGVTYELCAGLLDQ 110

Query: 121 -NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGG 179
              SL E+A +E  EECGY +    L ++ +++SGVG  G  QT+F+ EVTD  + + GG
Sbjct: 111 PGLSLEEVACKEAWEECGYRLAPSDLRRVTSYKSGVGLTGSSQTMFYAEVTDAQRGSPGG 170

Query: 180 GVDE--ELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA 223
           G+ E  ELIEVV + L+ AR +    +V    G +F + WF +  A
Sbjct: 171 GLAEEGELIEVVHLPLDGARTFADDPDVPKTLGVIFGISWFFSCVA 216

Hydrolyzes UDP-glucose to glucose 1-phosphate and UMP and ADP-ribose to ribose 5-phosphate and AMP. The physiological substrate is probably UDP-glucose. Poor activity on other substrates such as ADP-glucose, CDP-glucose, GDP-glucose and GDP-mannose.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 5

>sp|Q9D142|NUD14_MOUSE Uridine diphosphate glucose pyrophosphatase OS=Mus musculus GN=Nudt14 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 19/226 (8%)

Query: 1   MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQ 60
           M +I    +     S +++P+++ + Q+ + K   +      +  H    I+M   +   
Sbjct: 1   MERIDGVAVGLCAHSPYLRPFTLHYRQDGVQKSWDF------MKTHDSVTILMFNSSRRS 54

Query: 61  II---ETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGI 117
           ++   + R + +       F   L +V  +  P+E +         P   GV +E CAGI
Sbjct: 55  LVLVKQFRPAVYAGEVERHFPGSLTAVNQDQ-PQELQQA------LPGSAGVMVELCAGI 107

Query: 118 VDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVN 176
           VD+   SL E A +E  EECGY +    L ++ T+ SGVG    RQT+F+ EVTD  +  
Sbjct: 108 VDQPGLSLEEAACKEAWEECGYRLVPTDLRRVATYMSGVGLTSSRQTMFYAEVTDAQRGG 167

Query: 177 SGGGVDE--ELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLA 220
            GGG+ E  ELIEV+ + L++A+ +    ++    G ++A+ WF +
Sbjct: 168 PGGGLAEEGELIEVIHLNLDDAQAFADNPDIPKTLGVIYAISWFFS 213

Hydrolyzes UDP-glucose to glucose 1-phosphate and UMP and ADP-ribose to ribose 5-phosphate and AMP. The physiological substrate is probably UDP-glucose. Poor activity on other substrates such as ADP-glucose, CDP-glucose, GDP-glucose and GDP-mannose.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 5

>sp|A7ML00|NUDK_CROS8 GDP-mannose pyrophosphatase NudK OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=nudK PE=3 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 3/112 (2%)

Query: 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFV 167
           G+ +E CAG++D ++    I R+E +EE GY   V   EK+    +  G   +   LF  
Sbjct: 78  GMLIEACAGLLDDDEPEVCI-RKEAIEETGY--RVNAAEKVFELYTSPGGVTELIHLFIA 134

Query: 168 EVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFL 219
           E  D  + N GGGV++E IEV+EM   EA E + Q  +R     L   H  L
Sbjct: 135 EYDDASRANEGGGVEDEEIEVLEMPFSEALEKVRQGVIRDAKTVLLLQHLQL 186

Catalyzes the hydrolysis of GDP-mannose.

Cronobacter sakazakii (strain ATCC BAA-894) (taxid: 290339)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A6TC90|NUDK_KLEP7 GDP-mannose pyrophosphatase NudK OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=nudK PE=3 SV=1

 Score = 57.4 bits (137), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 5/107 (4%)

Query: 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVP-VEKLEKIQTFRSGVGSAGDRQTLFF 166
           G+ +E CAG++D ++  A I R+E +EE GY+V  V KL   + F S  G   +    F 
Sbjct: 78  GMLIETCAGLLDNDEPEACI-RKEAVEETGYEVGEVRKL--FELFMS-PGGVTEVVHFFI 133

Query: 167 VEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
            E +D  +  SGGGVD+E IEV+E+   +A + +A  E+R     + 
Sbjct: 134 AEYSDAQRTTSGGGVDDEAIEVLELPFSQALQMVADGEIRDGKAVIL 180

Catalyzes the hydrolysis of GDP-mannose.

Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q6D8X4|NUDK_ERWCT GDP-mannose pyrophosphatase NudK OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=nudK PE=3 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
           E G+ LE CAG++D + S  E  R E +EE GY   V  +EK+       G   +R   F
Sbjct: 76  ESGMLLEACAGLLD-DYSPEECIRNEAIEETGY--AVGNVEKLFDAYMSPGGVTERLHFF 132

Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMH-----WF 218
             E  + ++ NSGGGV++E IEV+E+   EA   +    ++     +   H     WF
Sbjct: 133 AAEYDESLRDNSGGGVEDEDIEVLELPFSEAIAMMNDGRIKDGKTIMLLQHAIIRGWF 190

Catalyzes the hydrolysis of GDP-mannose.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A8ADC6|NUDK_CITK8 GDP-mannose pyrophosphatase NudK OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=nudK PE=3 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
           E G  +E CAG++D ++  A I R+E +EE GY+V   ++ K+       G   +    F
Sbjct: 76  ESGQLIETCAGLLDNDEPEACI-RKEAIEETGYEVG--EVRKLFELYMSPGGVTELIHFF 132

Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
             E +D  + N+GGGV++E IEV+E+ L +A   +   E+R     L 
Sbjct: 133 IAEYSDSQRANAGGGVEDEDIEVLELPLTQALAMIKTGEIRDGKTVLL 180

Catalyzes the hydrolysis of GDP-mannose.

Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q32DA4|NUDK_SHIDS GDP-mannose pyrophosphatase NudK OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nudK PE=3 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
           E G  +E CAG++D ++    I R+E +EE GY+V   ++ K+       G   +    F
Sbjct: 76  ESGQLIETCAGLLDNDEPEVCI-RKEAIEETGYEVG--EVRKLFELYMSPGGVTELIHFF 132

Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
             E +D+ + N+GGGV++E IEV+E+   +A E +   E+R     L 
Sbjct: 133 IAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLL 180

Catalyzes the hydrolysis of GDP-mannose.

Shigella dysenteriae serotype 1 (strain Sd197) (taxid: 300267)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8XBE7|NUDK_ECO57 GDP-mannose pyrophosphatase NudK OS=Escherichia coli O157:H7 GN=nudK PE=3 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
           E G  +E CAG++D ++    I R+E +EE GY+V   ++ K+       G   +    F
Sbjct: 76  ESGQLIETCAGLLDNDEPEVCI-RKEAIEETGYEVG--EVRKLFELYMSPGGVTELIHFF 132

Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
             E +D+ + N+GGGV++E IEV+E+   +A E +   E+R     L 
Sbjct: 133 IAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLL 180

Catalyzes the hydrolysis of GDP-mannose.

Escherichia coli O157:H7 (taxid: 83334)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q83K58|NUDK_SHIFL GDP-mannose pyrophosphatase NudK OS=Shigella flexneri GN=nudK PE=3 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
           E G  +E CAG++D ++    I R+E +EE GY+V   ++ K+       G   +    F
Sbjct: 76  ESGQLIETCAGLLDNDEPEVCI-RKEAIEETGYEVG--EVRKLFELYMSPGGVTELIHFF 132

Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
             E +D+ + N+GGGV++E IEV+E+   +A E +   E+R     L 
Sbjct: 133 IAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLL 180

Catalyzes the hydrolysis of GDP-mannose.

Shigella flexneri (taxid: 623)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
91081183	205	PREDICTED: similar to UDP-glucose pyroph	0.886	0.995	0.466	2e-50
321466727	211	hypothetical protein DAPPUDRAFT_213302 [	0.904	0.985	0.484	5e-50
91085093	210	PREDICTED: similar to AGAP004158-PA [Tri	0.608	0.666	0.585	1e-42
389609917	211	UDP-glucose pyrophosphatase [Papilio xut	0.9	0.981	0.416	6e-40
195053610	211	GH21306 [Drosophila grimshawi] gi|193895	0.886	0.966	0.411	5e-39
357623953	211	hypothetical protein KGM_22654 [Danaus p	0.9	0.981	0.407	1e-38
195574324	438	GD18086 [Drosophila simulans] gi|1942010	0.834	0.438	0.413	1e-37
320543347	212	CG42813 [Drosophila melanogaster] gi|318	0.834	0.905	0.413	1e-37
326633289	232	RH24252p [Drosophila melanogaster]	0.834	0.827	0.413	1e-37
195503835	404	GE10580 [Drosophila yakuba] gi|194184921	0.834	0.475	0.413	1e-37

>gi|91081183|ref|XP_975594.1| PREDICTED: similar to UDP-glucose pyrophosphatase [Tribolium castaneum] gi|270005275|gb|EFA01723.1| hypothetical protein TcasGA2_TC007303 [Tribolium castaneum]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/223 (46%), Positives = 145/223 (65%), Gaps = 19/223 (8%)

Query: 1   MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQ 60
           MNKI++  +   + S +++P ++ FVQ      N       L+  H    I+++   +  
Sbjct: 1   MNKISDVVLKPLEKSIYVKPQTMHFVQ------NGRKRTWDLLDVHDSVAILLHNTRKQT 54

Query: 61  IIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDK 120
           +I  +  QF  P           VY  SIPEEDR G+IDV KYPAELG+TLE CAG+VDK
Sbjct: 55  LIFVK--QFRPP-----------VYFGSIPEEDRKGTIDVNKYPAELGITLEMCAGLVDK 101

Query: 121 NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGG 180
           +K L EIA+EE+LEECGYDVP+  L K+ ++RSGVG+ G  QT ++ EVTDDMKV+ GGG
Sbjct: 102 DKPLVEIAKEEILEECGYDVPLSSLVKVGSYRSGVGTLGSLQTTYYCEVTDDMKVSQGGG 161

Query: 181 VDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA 223
           V +E+I+VVEM + E ++Y+ QD++ SP  FLFA++WFL  K 
Sbjct: 162 VGDEIIDVVEMTVPEVKKYITQDKIPSPPSFLFAVYWFLLNKV 204

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466727|gb|EFX77721.1| hypothetical protein DAPPUDRAFT_213302 [Daphnia pulex]

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 111/229 (48%), Positives = 145/229 (63%), Gaps = 21/229 (9%)

Query: 1   MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQ 60
           MN +++  I+  ++S F+QP+ + F      K+  +     L+  H+   I++  I++ +
Sbjct: 1   MNDLSDVTIVPLENSNFVQPFRMLFKHAG--KDRLWD----LVRVHESVAIIIFNISKKK 54

Query: 61  IIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDK 120
           +I  R             Q   +VYINSIP+EDRT  ID  KYPA+LG TLE CAGIVDK
Sbjct: 55  LIFVR-------------QFRPAVYINSIPQEDRTNPIDTEKYPAKLGFTLELCAGIVDK 101

Query: 121 NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGG 180
            K+LAEIA EEVLEECGY V  +KLE I  F SGVG +GD QT+F+ EVTD+MKV+SGGG
Sbjct: 102 KKTLAEIAAEEVLEECGYKVDPDKLEYIIQFHSGVGLSGDPQTVFYAEVTDEMKVSSGGG 161

Query: 181 VDE--ELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQYV 227
             E  ELI+VVEM + E  E+LAQ  V SP GFLF + WF   KA  +V
Sbjct: 162 NPEEGELIDVVEMSMSEVEEFLAQKRVPSPGGFLFGLQWFFNKKASLFV 210

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085093|ref|XP_967751.1| PREDICTED: similar to AGAP004158-PA [Tribolium castaneum] gi|270008500|gb|EFA04948.1| hypothetical protein TcasGA2_TC015015 [Tribolium castaneum]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 104/140 (74%)

Query: 83  SVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPV 142
           SVY++ IP+ DR G+ID  KYPA LG+TLEFCAG+ DK     +IAREE+LEECGYDVP+
Sbjct: 64  SVYLSRIPQGDRVGTIDTGKYPASLGITLEFCAGLEDKTAPTEQIAREEILEECGYDVPL 123

Query: 143 EKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQ 202
           EKLEKI TF++   + G R T+++ EVTDDM+V  GGGVD+E+I+VVEM +EE  EY  Q
Sbjct: 124 EKLEKIATFKNLTETTGARSTMYYCEVTDDMRVAQGGGVDDEIIDVVEMPVEEVLEYAQQ 183

Query: 203 DEVRSPSGFLFAMHWFLAAK 222
             V SP  F+F + WFL  K
Sbjct: 184 GYVNSPMNFMFGLQWFLYHK 203

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609917|dbj|BAM18570.1| UDP-glucose pyrophosphatase [Papilio xuthus]

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 95/228 (41%), Positives = 133/228 (58%), Gaps = 21/228 (9%)

Query: 1   MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQ 60
           M  +    I     S +++P+   + Q    KE  +     L+  H    IV+  ++   
Sbjct: 1   MEDLKNVYISPLPDSPYVKPFRFNYTQNG--KEKTW----DLLEVHDSVAIVVFNVSRKV 54

Query: 61  IIETRSSQFIQPYSVKFVQVLLSVYINSI-PEEDRTGSIDVTKYPAELGVTLEFCAGIVD 119
           +I      F++       Q   ++Y N I PE+ +  +ID TKYPA LG+ LE CAGI+D
Sbjct: 55  MI------FVK-------QFRPAIYYNCISPEDRKKTTIDTTKYPASLGLALEMCAGIID 101

Query: 120 KNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGG 179
           KNK++ EIA+EEVLEECGYDVP+ KL +I ++RSGVG  G  QT F+ EVTDDMK   GG
Sbjct: 102 KNKTVEEIAKEEVLEECGYDVPLSKLHRITSYRSGVGVQGALQTFFYCEVTDDMKTEKGG 161

Query: 180 GVDEELIEVVEMGLEEAREYL-AQDEVRSPSGFLFAMHWFLAAKAGQY 226
           GVD+ELIEV+E  + E  E + +   + SP   LFA+ WFL  KA ++
Sbjct: 162 GVDDELIEVIEKTIPEIEEMVNSPGPITSPPSCLFALMWFLHYKADKF 209

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195053610|ref|XP_001993719.1| GH21306 [Drosophila grimshawi] gi|193895589|gb|EDV94455.1| GH21306 [Drosophila grimshawi]

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 134/226 (59%), Gaps = 22/226 (9%)

Query: 1   MNKITEAQIIE-TQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEA 59
           M  IT+  + +  + S +++P+ + +VQ  + K         L+  H    IV+   +  
Sbjct: 1   MENITKVWVGKLPEDSPYVKPFRMYYVQNGVEKNWD------LLKVHDSVAIVLYNTSRQ 54

Query: 60  QIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRT-GSIDVTKYPAELGVTLEFCAGIV 118
           +++  R             Q   +VY   I  E  T   +D+  +P  +GVTLE CAGIV
Sbjct: 55  KLVLVR-------------QFRPAVYHGVITSEKGTFDKVDLAAFPPAIGVTLELCAGIV 101

Query: 119 DKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSG 178
           DK+KS AEIAREE++EECGYDVPVE++E++  +RSGVGS+G +Q +++ EVTDD K NSG
Sbjct: 102 DKSKSWAEIAREEMVEECGYDVPVERIEQVMVYRSGVGSSGAKQAMYYCEVTDDDKANSG 161

Query: 179 GGVDEELIEVVEMGLEEAREYLAQDEV-RSPSGFLFAMHWFLAAKA 223
           GGV +ELIEVVE+ L+E R+ + Q  V  SP   L  + WF A KA
Sbjct: 162 GGVGDELIEVVELSLDEGRQMVQQGAVNNSPPSCLMGLMWFFANKA 207

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623953|gb|EHJ74903.1| hypothetical protein KGM_22654 [Danaus plexippus]

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/228 (40%), Positives = 131/228 (57%), Gaps = 21/228 (9%)

Query: 1   MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQ 60
           M  + +  I     S +++P+   + Q    KE  +     L+  H    IV+  +T   
Sbjct: 1   MEDLKDVYISPLPDSPYVKPFRFNYTQNG--KEKTW----DLLEVHDSVAIVVFNVTRKV 54

Query: 61  IIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGS-IDVTKYPAELGVTLEFCAGIVD 119
           ++      F++       Q   ++Y N I  +DR    ID  KYPA LG+ LE CAGI+D
Sbjct: 55  MV------FVK-------QFRPAIYYNCIHPDDRKEEVIDTKKYPASLGIALEMCAGIID 101

Query: 120 KNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGG 179
           KNK +  IA+EEVLEECGYDVP+E+L+KI ++RSGVG  G  QT F+ EVTDDMK   GG
Sbjct: 102 KNKPVEHIAKEEVLEECGYDVPIERLQKITSYRSGVGVQGALQTFFYCEVTDDMKTEQGG 161

Query: 180 GVDEELIEVVEMGLEEAREYL-AQDEVRSPSGFLFAMHWFLAAKAGQY 226
           GVD+E+IEV+E  + E  E + +   + SP   LFA+ WFL  KA ++
Sbjct: 162 GVDDEIIEVIEKTIPEIEEMVNSPGPIASPPSCLFALMWFLHYKADKF 209

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195574324|ref|XP_002105139.1| GD18086 [Drosophila simulans] gi|194201066|gb|EDX14642.1| GD18086 [Drosophila simulans]

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 21/213 (9%)

Query: 13  QSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQP 72
           Q S +++P+ + +VQ  + K         L+  H    I++   +  +++  R       
Sbjct: 240 QDSPYVKPFRLYYVQNGVEKNWD------LLKVHDSVAIILYNTSRQKLVLVR------- 286

Query: 73  YSVKFVQVLLSVYINSIPEEDRT-GSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREE 131
                 Q   +VY   I     T   +D+ ++P  +GVTLE CAGIVDKNKS  EIAREE
Sbjct: 287 ------QFRPAVYHGIISSAKGTFDEVDLKEFPPAIGVTLELCAGIVDKNKSWVEIAREE 340

Query: 132 VLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEM 191
           V+EECGYDVPVE++E++  +RSGVGS+G +QT+++ EVTD  K   GGGVD+E+IEVVE+
Sbjct: 341 VVEECGYDVPVERIEEVMVYRSGVGSSGAKQTMYYCEVTDADKATGGGGVDDEIIEVVEL 400

Query: 192 GLEEAREYLAQDEV-RSPSGFLFAMHWFLAAKA 223
            LEEA++ + Q  V  SP   L  + WF A +A
Sbjct: 401 SLEEAKQMIQQGAVNNSPPSCLMGLMWFFANRA 433

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320543347|ref|NP_733202.2| CG42813 [Drosophila melanogaster] gi|318068877|gb|AAF56679.3| CG42813 [Drosophila melanogaster]

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 126/213 (59%), Gaps = 21/213 (9%)

Query: 13  QSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQP 72
           Q S +++P+ + +VQ  + K         L+  H    I++   +  +++  R       
Sbjct: 14  QDSPYVKPFRLYYVQNGVEKNWD------LLKVHDSVAIILYNTSRQKLVLVR------- 60

Query: 73  YSVKFVQVLLSVYINSIPEEDRT-GSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREE 131
                 Q   +VY   I     T   +D+ ++P  +GVTLE CAGIVDKNKS  EIAREE
Sbjct: 61  ------QFRPAVYHGIISSAKGTFDEVDLKEFPPAIGVTLELCAGIVDKNKSWVEIAREE 114

Query: 132 VLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEM 191
           V+EECGYDVPVE++E++  +RSGVGS+G +QT+++ EVTD  K   GGGVD+E+IEVVE+
Sbjct: 115 VVEECGYDVPVERIEEVMVYRSGVGSSGAKQTMYYCEVTDADKATGGGGVDDEIIEVVEL 174

Query: 192 GLEEAREYLAQDEV-RSPSGFLFAMHWFLAAKA 223
            LEEA+  + Q  V  SP   L  + WF A +A
Sbjct: 175 SLEEAKRMIQQGAVNNSPPSCLMGLMWFFANRA 207

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326633289|gb|ADZ99412.1| RH24252p [Drosophila melanogaster]

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 126/213 (59%), Gaps = 21/213 (9%)

Query: 13  QSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQP 72
           Q S +++P+ + +VQ  + K         L+  H    I++   +  +++  R       
Sbjct: 34  QDSPYVKPFRLYYVQNGVEKNWD------LLKVHDSVAIILYNTSRQKLVLVR------- 80

Query: 73  YSVKFVQVLLSVYINSIPEEDRT-GSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREE 131
                 Q   +VY   I     T   +D+ ++P  +GVTLE CAGIVDKNKS  EIAREE
Sbjct: 81  ------QFRPAVYHGIISSAKGTFDEVDLKEFPPAIGVTLELCAGIVDKNKSWVEIAREE 134

Query: 132 VLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEM 191
           V+EECGYDVPVE++E++  +RSGVGS+G +QT+++ EVTD  K   GGGVD+E+IEVVE+
Sbjct: 135 VVEECGYDVPVERIEEVMVYRSGVGSSGAKQTMYYCEVTDADKATGGGGVDDEIIEVVEL 194

Query: 192 GLEEAREYLAQDEV-RSPSGFLFAMHWFLAAKA 223
            LEEA+  + Q  V  SP   L  + WF A +A
Sbjct: 195 SLEEAKRMIQQGAVNNSPPSCLMGLMWFFANRA 227

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195503835|ref|XP_002098820.1| GE10580 [Drosophila yakuba] gi|194184921|gb|EDW98532.1| GE10580 [Drosophila yakuba]

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 126/213 (59%), Gaps = 21/213 (9%)

Query: 13  QSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQP 72
           Q S +++P+ + +VQ  + K         L+  H    I++   +  +++  R       
Sbjct: 206 QDSPYVKPFRLYYVQNGVEKNWD------LLKVHDSVAIILYNTSRQKLVLVR------- 252

Query: 73  YSVKFVQVLLSVYINSIPEEDRT-GSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREE 131
                 Q   +VY   I     T   +D+ ++P  +GVTLE CAGIVDKNKS  EIAREE
Sbjct: 253 ------QFRPAVYHGIISSAKGTFDEVDLKEFPPAIGVTLELCAGIVDKNKSWVEIAREE 306

Query: 132 VLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEM 191
           V+EECGYDVPVE++E++  +RSGVGS+G +QT+++ EVTD  K   GGGVD+E+IEVVE+
Sbjct: 307 VVEECGYDVPVERIEEVMVYRSGVGSSGAKQTMYYCEVTDADKATGGGGVDDEIIEVVEL 366

Query: 192 GLEEAREYLAQDEV-RSPSGFLFAMHWFLAAKA 223
            LEEA+  + Q  V  SP   L  + WF A +A
Sbjct: 367 SLEEAKRMIQQGAVNNSPPSCLMGLMWFFANRA 399

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
FB|FBgn0261995	404	CG42813 [Drosophila melanogast	0.613	0.349	0.538	1.1e-38
ZFIN|ZDB-GENE-041014-254	242	nudt14 "nudix (nucleoside diph	0.960	0.913	0.356	7.7e-32
UNIPROTKB|Q5ZJ67	227	NUDT14 "Uncharacterized protei	0.5	0.506	0.559	1.5e-28
UNIPROTKB|F1PRK5	186	NUDT14 "Uncharacterized protei	0.573	0.709	0.411	1.6e-22
UNIPROTKB|O95848	222	NUDT14 "Uridine diphosphate gl	0.591	0.612	0.414	2.1e-22
UNIPROTKB|Q05B60	222	NUDT14 "Uridine diphosphate gl	0.573	0.594	0.397	7e-22
RGD|1310583	222	Nudt14 "nudix (nucleoside diph	0.508	0.527	0.425	9e-22
UNIPROTKB|F1S972	176	NUDT14 "Uncharacterized protei	0.573	0.75	0.389	4.9e-21
UNIPROTKB|Q5HW20	198	CJE0497 "NUDIX domain protein"	0.504	0.585	0.45	1.7e-20
TIGR_CMR|CJE_0497	198	CJE_0497 "NUDIX domain protein	0.504	0.585	0.45	1.7e-20

FB|FBgn0261995 CG42813 [Drosophila melanogaster (taxid:7227)]

 Score = 392 (143.0 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 77/143 (53%), Positives = 101/143 (70%)

Query:    83 SVYINSIPEEDRT-GSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVP 141
             +VY   I     T   +D+ ++P  +GVTLE CAGIVDKNKS  EIAREEV+EECGYDVP
Sbjct:   257 AVYHGIISSAKGTFDEVDLKEFPPAIGVTLELCAGIVDKNKSWVEIAREEVVEECGYDVP 316

Query:   142 VEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA 201
             VE++E++  +RSGVGS+G +QT+++ EVTD  K   GGGVD+E+IEVVE+ LEEA+  + 
Sbjct:   317 VERIEEVMVYRSGVGSSGAKQTMYYCEVTDADKATGGGGVDDEIIEVVELSLEEAKRMIQ 376

Query:   202 QDEVR-SPSGFLFAMHWFLAAKA 223
             Q  V  SP   L  + WF A +A
Sbjct:   377 QGAVNNSPPSCLMGLMWFFANRA 399

GO:0046872 "metal ion binding" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

ZFIN|ZDB-GENE-041014-254 nudt14 "nudix (nucleoside diphosphate linked moiety X)-type motif 14" [Danio rerio (taxid:7955)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 86/241 (35%), Positives = 132/241 (54%)

Query:     1 MNKITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQ 60
             M +I   Q++   SS +++P+ V + Q    K        F+ T      ++ N  +   
Sbjct:     1 MEQINNIQVVPCTSSNYLRPFRVHYNQNGTKKSWD-----FMQTHDSVSVLIFNTTSHCF 55

Query:    61 II--ETRSSQFIQPYSVKFVQVLLSVYINS------IPEEDRTG--SIDVTKY--PAELG 108
             I+  + R + ++  +     + L      S      +PEED+ G  S + + +  PA  G
Sbjct:    56 ILVKQFRPAVYMSEWERSKPKPLQPAEEESESTEPKVPEEDKAGETSEETSSHQPPASAG 115

Query:   109 VTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFV 167
             VT E CAG+VDK N SL EIAR+EVLEECGYDVPV KL KI ++RSGVG  G +QT+F+ 
Sbjct:   116 VTFELCAGLVDKPNLSLEEIARQEVLEECGYDVPVTKLRKITSYRSGVGVTGSKQTMFYA 175

Query:   168 EVTDDMKVNSGGGVDEE--LIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQ 225
             EV+++ +V  GGG  +E  LIEVV++ L EA  +   + +    G +F+  WF +  + +
Sbjct:   176 EVSEENRVGEGGGKPQEGELIEVVKVPLHEAMTFAFDESIPKTMGVIFSFIWFHSNMSPK 235

Query:   226 Y 226
             Y
Sbjct:   236 Y 236

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5ZJ67 NUDT14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 66/118 (55%), Positives = 83/118 (70%)

Query:   104 PAELGVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
             PA +GVT E CAGIVDK + SL EIA EE+LEECGY VPV  L+KI ++RSGVG  G RQ
Sbjct:    94 PAVVGVTYELCAGIVDKPHLSLEEIACEEILEECGYRVPVTNLKKITSYRSGVGVTGSRQ 153

Query:   163 TLFFVEVTDDMKVNSGGGVDEE--LIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWF 218
             TLF+ EVTD MK + GGG  EE  LIEVVE+ LE++ ++   + +    G +F+  WF
Sbjct:   154 TLFYAEVTDQMKTSGGGGQPEEGELIEVVEIPLEDSMKFAYDETLPKTMGVIFSFTWF 211

GO:0046872 "metal ion binding" evidence=IEA

GO:0008768 "UDP-sugar diphosphatase activity" evidence=IEA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IEA

UNIPROTKB|F1PRK5 NUDT14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/136 (41%), Positives = 78/136 (57%)

Query:    91 EEDRTGSIDVTKYPAELGVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQ 149
             ++DR   + V   P   GVT E CAG+VD+   SL E+A  E  EECGY +    L ++ 
Sbjct:    46 DQDRPQELQVA-LPGSAGVTYELCAGLVDQPGLSLEEVACSEAWEECGYRLAPSDLRRVA 104

Query:   150 TFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEE--LIEVVEMGLEEAREYLAQDEVRS 207
             T++SGVG  G  QT+F+ EVTD  +   GGG+ EE  LIEVV + L+ AR +    +V  
Sbjct:   105 TYKSGVGLTGSSQTMFYAEVTDGQRGGPGGGLAEEGELIEVVHLPLDGARAFADDPDVPK 164

Query:   208 PSGFLFAMHWFLAAKA 223
               G +F + WF +  A
Sbjct:   165 TLGVIFGISWFFSCVA 180

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IEA

GO:0008768 "UDP-sugar diphosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|O95848 NUDT14 "Uridine diphosphate glucose pyrophosphatase" [Homo sapiens (taxid:9606)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 58/140 (41%), Positives = 83/140 (59%)

Query:    88 SIPEEDRTGSIDVTK-YPAELGVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKL 145
             S+   D+ G  ++    P   GVT+E CAG+VD+   SL E+A +E  EECGY +    L
Sbjct:    77 SLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDL 136

Query:   146 EKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGG-VDE-ELIEVVEMGLEEAREYLAQD 203
              ++ T+ SGVG  G RQT+F+ EVTD  +   GGG V+E ELIEVV + LE A+ +    
Sbjct:   137 RRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDP 196

Query:   204 EVRSPSGFLFAMHWFLAAKA 223
             ++    G +F + WFL+  A
Sbjct:   197 DIPKTLGVIFGVSWFLSQVA 216

GO:0046872 "metal ion binding" evidence=IEA

GO:0008768 "UDP-sugar diphosphatase activity" evidence=IEA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q05B60 NUDT14 "Uridine diphosphate glucose pyrophosphatase" [Bos taurus (taxid:9913)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 54/136 (39%), Positives = 80/136 (58%)

Query:    91 EEDRTGSIDVTKYPAELGVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQ 149
             E+DR  ++     P   GVT E CAG++D+   SL E+A +E  EECGY +    L ++ 
Sbjct:    82 EQDRPQALQAA-LPGSAGVTYELCAGLLDQPGLSLEEVACKEAWEECGYRLAPSDLRRVT 140

Query:   150 TFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEE--LIEVVEMGLEEAREYLAQDEVRS 207
             +++SGVG  G  QT+F+ EVTD  + + GGG+ EE  LIEVV + L+ AR +    +V  
Sbjct:   141 SYKSGVGLTGSSQTMFYAEVTDAQRGSPGGGLAEEGELIEVVHLPLDGARTFADDPDVPK 200

Query:   208 PSGFLFAMHWFLAAKA 223
               G +F + WF +  A
Sbjct:   201 TLGVIFGISWFFSCVA 216

GO:0005737 "cytoplasm" evidence=IEA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IEA

GO:0008768 "UDP-sugar diphosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1310583 Nudt14 "nudix (nucleoside diphosphate linked moiety X)-type motif 14" [Rattus norvegicus (taxid:10116)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 51/120 (42%), Positives = 75/120 (62%)

Query:   104 PAELGVTLEFCAGIVDKNK-SLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
             P   GV +E CAGIVD+ + SL E+A +E  EECGY +    L ++ T+ SGVG  G RQ
Sbjct:    94 PGSAGVMVELCAGIVDQPELSLEEVACKEAWEECGYHLVPADLRRVATYMSGVGLTGSRQ 153

Query:   163 TLFFVEVTDDMKVNSGGGVDEE--LIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLA 220
             T+F+ EVTD  +   GGG+ EE  LIEVV + +++A+ +    ++    G +FA+ WF +
Sbjct:   154 TMFYAEVTDAQRGGPGGGLAEEGELIEVVHLNVDDAQAFADNPDIPKTLGVIFAISWFFS 213

GO:0008768 "UDP-sugar diphosphatase activity" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IEA;ISO

UNIPROTKB|F1S972 NUDT14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 53/136 (38%), Positives = 78/136 (57%)

Query:    91 EEDRTGSIDVTKYPAELGVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQ 149
             ++DR   +     P   GVT E CAG+VD+   SL E+A +E  EECGY +    L ++ 
Sbjct:    36 DQDRPRELPAA-LPGSAGVTFELCAGLVDQPGLSLEEVACKEAWEECGYRLAPSDLRRVA 94

Query:   150 TFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEE--LIEVVEMGLEEAREYLAQDEVRS 207
             +++SGVG  G  QT+F+  VTD  +   GGG+ EE  LIEVV + L+ A+ +    +V  
Sbjct:    95 SYKSGVGLTGSSQTMFYAAVTDAQRGGPGGGLAEEGELIEVVHLPLDGAQAFADDPDVPK 154

Query:   208 PSGFLFAMHWFLAAKA 223
               G +F + WFL+  A
Sbjct:   155 TLGVIFGISWFLSCVA 170

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IEA

GO:0008768 "UDP-sugar diphosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5HW20 CJE0497 "NUDIX domain protein" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 54/120 (45%), Positives = 79/120 (65%)

Query:   106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
             ++G T+E C+G+VDK  SL EIA+EE +EE GY  P + LEKI  F +G GS   +Q+ +
Sbjct:    79 DMGYTIELCSGLVDKKLSLEEIAKEECIEELGY-AP-KNLEKIGDFYTGFGSGVSKQSFY 136

Query:   166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQ 225
             FVEV +  K++SGGGVD+E IE V + +++  E   ++ +R+P    FA  WFL  K G+
Sbjct:   137 FVEVDEKDKISSGGGVDDEEIEAVYVKVQDF-EKKCKNMIRTPL-LDFAYMWFLKEKWGK 194

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_0497 CJE_0497 "NUDIX domain protein" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 54/120 (45%), Positives = 79/120 (65%)

Query:   106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
             ++G T+E C+G+VDK  SL EIA+EE +EE GY  P + LEKI  F +G GS   +Q+ +
Sbjct:    79 DMGYTIELCSGLVDKKLSLEEIAKEECIEELGY-AP-KNLEKIGDFYTGFGSGVSKQSFY 136

Query:   166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQ 225
             FVEV +  K++SGGGVD+E IE V + +++  E   ++ +R+P    FA  WFL  K G+
Sbjct:   137 FVEVDEKDKISSGGGVDDEEIEAVYVKVQDF-EKKCKNMIRTPL-LDFAYMWFLKEKWGK 194

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05B60	NUD14_BOVIN	3, ., 6, ., 1, ., 4, 5	0.2964	0.9260	0.9594	yes	N/A
Q9D142	NUD14_MOUSE	3, ., 6, ., 1, ., 4, 5	0.2831	0.9	0.9324	yes	N/A
O95848	NUD14_HUMAN	3, ., 6, ., 1, ., 4, 5	0.3053	0.9	0.9324	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691
3rd Layer	3.6.1.45	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	230
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	2e-24
TIGR00052	185	TIGR00052, TIGR00052, nudix-type nucleoside diphos	2e-21
pfam00293	133	pfam00293, NUDIX, NUDIX domain	1e-11
PRK15009	191	PRK15009, PRK15009, GDP-mannose pyrophosphatase Nu	9e-11
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	4e-05
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	8e-04

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 93.7 bits (234), Expect = 2e-24
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
            P   G  LE  AG++D  +   E AR E+ EE GY+     LEK+ +F    G + +R 
Sbjct: 24  PPVG-GWLLELPAGLIDPGEDPEEAARRELEEETGYE--AGDLEKLGSFYPSPGFSDERI 80

Query: 163 TLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFL 219
            LF  E     +   G   + E IEVV + L+EA E LA  E+   +  +  + W  
Sbjct: 81  HLFLAEDLSPGEE--GLLDEGEDIEVVLVPLDEALELLADGEIIDDATLIALLLWLA 135

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|129162 TIGR00052, TIGR00052, nudix-type nucleoside diphosphatase, YffH/AdpP family

 Score = 87.2 bits (216), Expect = 2e-21
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 16/196 (8%)

Query: 27  QEALIKENQYCHPQFL---ITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLS 83
           QE +IK+  Y     L   I  H+ +    +     +I +  ++  +  Y  K   V+L 
Sbjct: 3   QEIIIKDTLYSGFFSLLHNIFYHRLFKGGESIRVTREIYDRGNAAAVLLYDPKKDTVVLI 62

Query: 84  VYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVE 143
                  E+ R  +    + P  L    E  AG+V+K +S  ++AR E +EE GY V  +
Sbjct: 63  -------EQFRIAAYVNGEEPWLL----ELSAGMVEKGESPEDVARREAIEEAGYQV--K 109

Query: 144 KLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQD 203
            L K+ +F    G   +   LF  EV D+     GGG DEE IEV+ +   +A +++ + 
Sbjct: 110 NLRKLLSFYMSPGGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169

Query: 204 EVRSPSGFLFAMHWFL 219
           ++ +    +      L
Sbjct: 170 KIDNGKTVILLQWLQL 185

Members of this family include proteins of about 200 amino acids, including the recently characterized nudix hydrolase YffH, shows to be highly active as a GDP-mannose pyrophosphatase. It also includes the C-terminal half of a 361-amino acid protein, TrgB from Rhodobacter sphaeroides, shown experimentally to help confer tellurite resistance. This model also hits a region near the C-terminus of a 1092-amino acid protein of C. elegans [Unknown function, Enzymes of unknown specificity]. Length = 185

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
           P       E   G V+  +S  E A  E+ EE G  V +  L  +  + +     G+   
Sbjct: 24  PPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRVLLLLLLGVLEYPAPGRDGGEHVH 83

Query: 164 LFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAA 221
           +F  E+            ++E+ EV  + LEE  E L   E+R        +   LA 
Sbjct: 84  VFLAELLGGEPEPQPN--EDEVSEVRWVPLEELLELLLAGEIR------EVIALLLAL 133

Length = 133

>gnl|CDD|184971 PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional

 Score = 58.7 bits (142), Expect = 9e-11
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDV-PVEKLEKIQTFRSGVGSAGDRQTL 164
           E G  +E CAG++D ++    I R+E +EE GY+V  V KL ++     GV    +    
Sbjct: 76  ESGQLIETCAGLLDNDEPEVCI-RKEAIEETGYEVGEVRKLFELYMSPGGVT---ELIHF 131

Query: 165 FFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
           F  E +D  + N+GGGV++E IEV+E+   +A E +   E+R
Sbjct: 132 FIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIR 173

Length = 191

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 3/115 (2%)

Query: 92  EDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF 151
            D  G + + +     G   E   G V+  ++L E A  EV EE G DV V +L  +   
Sbjct: 8   LDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEV 67

Query: 152 RSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
            S          +F   +             +E+ EV  + L+E         +R
Sbjct: 68  ESPDEGEHAVVFVFLARLVGGEPTLL---PPDEISEVRWVTLDELPALALSPALR 119

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 116 GIVDKNKSLAEIAREEVLEECGYDV-PVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMK 174
           G ++  ++  E A  EV EE G      + L  I+ + S  G    +   +++     M+
Sbjct: 34  GKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHKTVHWWL-----MR 88

Query: 175 VNSGGGVDEELIEVVEMG---LEEAREYLAQDEVRS 207
              G    +   EV E+     +EAR+ L+    R 
Sbjct: 89  ALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRE 124

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	100.0
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.98
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.97
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.97
KOG4432|consensus	405		99.96
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.9
KOG4432|consensus	405		99.9
PLN03143	291	nudix hydrolase; Provisional	99.89
KOG3041|consensus	225		99.86
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.82
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.78
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.77
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.76
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.76
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.75
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.75
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.74
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.74
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.74
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.73
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.73
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.72
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.72
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.72
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.72
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.72
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.71
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.71
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.71
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.71
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.7
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.7
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.7
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.69
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.68
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.68
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.68
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.67
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.67
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.67
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.67
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.66
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.66
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.65
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.64
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.64
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.64
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.64
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.64
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.64
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.63
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.63
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.63
PRK10707	190	putative NUDIX hydrolase; Provisional	99.63
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.63
PLN02325	144	nudix hydrolase	99.63
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.62
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.62
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.62
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.61
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.6
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.6
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.57
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.56
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.56
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.56
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.55
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.54
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.52
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.52
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.52
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.49
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.48
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.48
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.48
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.43
PLN02791	770	Nudix hydrolase homolog	99.4
KOG3084|consensus	345		99.38
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.34
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.34
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.31
PRK08999	312	hypothetical protein; Provisional	99.29
PLN02709	222	nudix hydrolase	99.29
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.27
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.18
KOG2839|consensus	145		99.11
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	98.96
KOG3069|consensus	246		98.78
PLN02839	372	nudix hydrolase	98.5
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.46
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.32
KOG0648|consensus	295		98.21
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.1
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	96.96
KOG0142|consensus	225		96.59
KOG4195|consensus	275		96.08
KOG2937|consensus	348		95.88
COG4112	203	Predicted phosphoesterase (MutT family) [General f	92.8
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	89.97
KOG1689|consensus	221		82.74
KOG4313|consensus	306		80.41

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=100.00  E-value=3.2e-32  Score=230.66  Aligned_cols=178  Identities=21%  Similarity=0.409  Sum_probs=151.4

Q ss_pred             EeEEEEeeecCeeeEEEEEEe---ecCeE--eecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceec
Q psy11834          6 EAQIIETQSSQFIQPYSVKFV---QEALI--KENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQV   80 (230)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~---~~g~~--~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~   80 (230)
                      ++...+++.++|+++++.+++   +||..  ..|      +++.++++|+|++++.++++++|+|             ||
T Consensus         6 ~~~~~~~~~~~~~~v~~~~~~~~~pdG~~~~~~r------~vv~~~~~v~Vl~~~~~~~~vvLvr-------------Qy   66 (191)
T PRK15009          6 TLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKR------EVYDRGNGATILLYNAKKKTVVLIR-------------QF   66 (191)
T ss_pred             EEEEEEEEeCCeEEEEEEEEEEECCCCCccceEE------EEEEECCEEEEEEEECCCCEEEEEE-------------cc
Confidence            355667789999999997754   68874  345      8999999999999987678999999             99


Q ss_pred             ccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCe
Q psy11834         81 LLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGD  160 (230)
Q Consensus        81 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~  160 (230)
                      |++++....                ..+++||+|||.+|+| ++++||+|||+||||+.+  ..+.+++.+++++|.+++
T Consensus        67 R~~v~~~~~----------------~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a--~~~~~l~~~~~spG~s~e  127 (191)
T PRK15009         67 RVATWVNGN----------------ESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEV--GEVRKLFELYMSPGGVTE  127 (191)
T ss_pred             cccccccCC----------------CCceEEEEeccccCCC-CHHHHHHHHHHHhhCCcc--ceEEEeeEEEcCCcccCc
Confidence            999864321                1579999999999976 799999999999999999  999999999999999999


Q ss_pred             EEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q psy11834        161 RQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAK  222 (230)
Q Consensus       161 ~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~  222 (230)
                      .+|+|+|+.......+.+..+++|.++++|+|++++.+++.+|++.+ +.++.|++|++.++
T Consensus       128 ~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~d-a~ti~al~~~~~~~  188 (191)
T PRK15009        128 LIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRD-GKTVLLLNYLQTSH  188 (191)
T ss_pred             EEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCc-HHHHHHHHHHHHhc
Confidence            99999999753333344445788999999999999999999999997 78899999988763

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.98  E-value=1.9e-30  Score=221.64  Aligned_cols=181  Identities=17%  Similarity=0.272  Sum_probs=147.4

Q ss_pred             ceEeEEEEeeecCeeeEEEEEEe---ecCe---EeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccc
Q psy11834          4 ITEAQIIETQSSQFIQPYSVKFV---QEAL---IKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKF   77 (230)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~---~~g~---~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~   77 (230)
                      ++.++...++++ |+++.+.+++   ++|.   ...|      +++.++++|+|++++..+++++|+|            
T Consensus         8 ~~~~~~~~v~~~-~~~v~~~~~~~~~~~G~~~~~~~~------~vv~~~~~V~il~~~~~~~~vlLvr------------   68 (202)
T PRK10729          8 VEIIARETLYRG-FFSLDLYRFRHRLFNGEMSGEVRR------EIFERGHAAVLLPFDPVRDEVVLIE------------   68 (202)
T ss_pred             eEEEEEEEEEcC-eEEEEEEEEEEEecCCccccEEeE------EEEEcCCeEEEEEEECCCCEEEEEE------------
Confidence            444566666774 8877655443   4775   3455      8899999999999986568999999            


Q ss_pred             eecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc
Q psy11834         78 VQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS  157 (230)
Q Consensus        78 ~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~  157 (230)
                       |||+++..++                 ..+++||+|||.+|+||++.+||+|||.|||||.+  ..+..++.++++++.
T Consensus        69 -QyR~~~~~~~-----------------~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a--~~~~~l~~~~~spg~  128 (202)
T PRK10729         69 -QIRIAAYDTS-----------------ETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIV--GRTKPVLSYLASPGG  128 (202)
T ss_pred             -eeecccccCC-----------------CCCeEEEccceEcCCCCCHHHHHHHHHHHHhCcee--eEEEEEEEEEcCCCc
Confidence             9999984211                 14699999999999999999999999999999999  899999999999999


Q ss_pred             cCeEEEEEEEEEcCccccc-CCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q psy11834        158 AGDRQTLFFVEVTDDMKVN-SGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAG  224 (230)
Q Consensus       158 s~~~~~~y~a~~~~~~~~~-~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  224 (230)
                      +++.+|+|++..+...... .+..++.|.+++.|+|++++.+++.+|++.+ +.+++|++|++.++..
T Consensus       129 ~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d-~~ti~al~~~~~~~~~  195 (202)
T PRK10729        129 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN-AASVIALQWLQLHHQA  195 (202)
T ss_pred             CceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCc-HHHHHHHHHHHHhhHH
Confidence            9999999999964321111 1334789999999999999999999999997 7889999998877543

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.97  E-value=1.1e-29  Score=214.04  Aligned_cols=178  Identities=23%  Similarity=0.363  Sum_probs=147.5

Q ss_pred             cceEeEEEEeeecCeeeEEEEE--Eee-cC--eEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccc
Q psy11834          3 KITEAQIIETQSSQFIQPYSVK--FVQ-EA--LIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKF   77 (230)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~g--~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~   77 (230)
                      .++.++...++.++|+.++...  ... +|  ....|      +++.++++|+|++++.++++++|+|            
T Consensus         2 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~v~~~~~v~vl~~~~~~~~vlLvr------------   63 (185)
T TIGR00052         2 QQEIIIKDTLYSGFFSLLHNIFYHRLFKGGESIRVTR------EIYDRGNAAAVLLYDPKKDTVVLIE------------   63 (185)
T ss_pred             ceEEEEEEEEecCCcEEEEEEEEEEeeCCCCCceEEE------EEEEcCCeEEEEEEECCCCEEEEEE------------
Confidence            3455667788999999997432  333 55  34566      8999999999999986678999999            


Q ss_pred             eecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc
Q psy11834         78 VQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS  157 (230)
Q Consensus        78 ~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~  157 (230)
                       |||++.+.+..                 .+++||+|||++|+||++++||+|||+||||+.+  ..+..++.++.+++.
T Consensus        64 -q~R~~~~~~~~-----------------~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~--~~~~~~~~~~~~~g~  123 (185)
T TIGR00052        64 -QFRIAAYVNGE-----------------EPWLLELSAGMVEKGESPEDVARREAIEEAGYQV--KNLRKLLSFYSSPGG  123 (185)
T ss_pred             -CceeeeeecCC-----------------cceEEEECcEecCCCCCHHHHHHHHcccccccee--cceEEEEEEEcCCCC
Confidence             99999853311                 4689999999999999999999999999999999  899999999999999


Q ss_pred             cCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHH
Q psy11834        158 AGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFL  219 (230)
Q Consensus       158 s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~  219 (230)
                      +++.+++|++.+......+....+++|.+++.|++++++.+++.+|++.+ +.++.|++|+.
T Consensus       124 ~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d-~~t~~al~~~~  184 (185)
T TIGR00052       124 VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDN-GKTVILLQWLQ  184 (185)
T ss_pred             CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCC-HHHHHHHHHHh
Confidence            99999999999765443333344667889999999999999999999997 68888988875

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.97  E-value=7.5e-29  Score=208.33  Aligned_cols=168  Identities=17%  Similarity=0.173  Sum_probs=143.0

Q ss_pred             cceEeEEEEeeecCeeeEEEEEEe-ecCeEeecccccceeeEe--ecCeEEEEEEEcCCCEEEEEEecCCcCCcccccee
Q psy11834          3 KITEAQIIETQSSQFIQPYSVKFV-QEALIKENQYCHPQFLIT--QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQ   79 (230)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~--~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q   79 (230)
                      +++.++...+++++|+++++.+++ ++|....|      +.+.  .+++|.|++++ .++++||+|             |
T Consensus         7 ~~~~~~~~~v~~~~~~~v~~~~~~~~~G~~~~~------~~v~~~~~~~v~v~~~~-~~~~vlLvr-------------q   66 (185)
T PRK11762          7 KPEILNRETVAKSRLFRVESVDLEFSNGVERVY------ERMRPSGRGAVMIVPIL-DDDTLLLIR-------------E   66 (185)
T ss_pred             CCEEeeEEEEEeCCEEEEEEEEEEcCCCCEEEE------EEEecCCCCEEEEEEEe-CCCEEEEEE-------------e
Confidence            456677788899999999999997 68988888      6665  34578888876 478999999             9


Q ss_pred             cccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccC
Q psy11834         80 VLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAG  159 (230)
Q Consensus        80 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~  159 (230)
                      ||++.                      ..+.||||||.+|+||++.+||+||++||||+.+  ..+..++.++++++..+
T Consensus        67 ~r~~~----------------------~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~--~~l~~l~~~~~~~~~~~  122 (185)
T PRK11762         67 YAAGT----------------------ERYELGFPKGLIDPGETPLEAANRELKEEVGFGA--RQLTFLKELSLAPSYFS  122 (185)
T ss_pred             ecCCC----------------------CCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCC--cceEEEEEEecCCCccC
Confidence            99887                      5788999999999999999999999999999999  99999999999898889


Q ss_pred             eEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHH
Q psy11834        160 DRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWF  218 (230)
Q Consensus       160 ~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~  218 (230)
                      ..+++|++.....   .....++.|.+++.|++++++.+++.+|++.+ +.++.|+.|+
T Consensus       123 ~~~~~f~a~~~~~---~~~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d-~~ti~al~~~  177 (185)
T PRK11762        123 SKMNIVLAEDLYP---ERLEGDEPEPLEVVRWPLADLDELLARPDFSE-ARSVAALFLA  177 (185)
T ss_pred             cEEEEEEEEcccc---ccCCCCCCceeEEEEEcHHHHHHHHHcCCCCc-HHHHHHHHHH
Confidence            9999999984322   12234678889999999999999999999997 6778887554

>KOG4432|consensus

Probab=99.96  E-value=3.9e-29  Score=220.43  Aligned_cols=205  Identities=31%  Similarity=0.536  Sum_probs=186.4

Q ss_pred             CcceEeEEEEe-eecCeeeEEEEEEeecCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceec
Q psy11834          2 NKITEAQIIET-QSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQV   80 (230)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~   80 (230)
                      ..+.+.+.... .+|+|+++.++.|++||.++.|      +++..|++|.|+++|..+.+++|+|             ||
T Consensus       190 e~V~~~~~g~l~a~spy~~P~rl~y~qNGi~knW------Dl~k~hdSvt~iL~n~srk~LVlvq-------------qf  250 (405)
T KOG4432|consen  190 ELVLDPKKGGLIATSPYYNPKRLIYTQNGITKNW------DLAKCHDSVTCILVNMSRKELVLVQ-------------QF  250 (405)
T ss_pred             HHhcccccCCcccCCCCcCceEEEEEecCccccc------chhhCCCceEEEEEeccchheehhh-------------hc
Confidence            34555555555 4599999999999999999999      9999999999999999899999999             99


Q ss_pred             ccceeccCCc---c--cccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCC
Q psy11834         81 LLSVYINSIP---E--EDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGV  155 (230)
Q Consensus        81 r~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~  155 (230)
                      |+++|++.+.   +  ++..-+|+.+..++..++|+||++|.|+..-|..+-|.||..||+||+++++++..+..+.+..
T Consensus       251 RpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGV  330 (405)
T KOG4432|consen  251 RPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGV  330 (405)
T ss_pred             CcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeeccc
Confidence            9999998875   3  8888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCeEEEEEEEEEcCcccccCCCC--CCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q psy11834        156 GSAGDRQTLFFVEVTDDMKVNSGGG--VDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQ  225 (230)
Q Consensus       156 ~~s~~~~~~y~a~~~~~~~~~~~~~--~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  225 (230)
                      |.++..+++|++++.++.+..++..  +++|+|+++.++++++.+++.++.|..|.++++++.|||.|.|..
T Consensus       331 G~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~~q~~I~~~lt~~~gi~wfl~q~ap~  402 (405)
T KOG4432|consen  331 GQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLYRQHNIGPPLTTYYGIGWFLDQLAPR  402 (405)
T ss_pred             CCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHHhccCCCCCcceeeeHHHHHhhhccc
Confidence            9999999999999998876555544  678999999999999999999999988789999999999998864

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.90  E-value=1.8e-22  Score=159.96  Aligned_cols=136  Identities=32%  Similarity=0.386  Sum_probs=111.0

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      ++++|.+++++. ++++||+|             |+|++.                      .+..|++|||++|+||++
T Consensus         1 ~~~~v~v~~~~~-~~~iLl~~-------------~~~~~~----------------------~~~~w~~PgG~ve~gEs~   44 (137)
T cd03424           1 HPDAVAVLPYDD-DGKVVLVR-------------QYRPPV----------------------GGWLLELPAGLIDPGEDP   44 (137)
T ss_pred             CCCEEEEEEEcC-CCeEEEEE-------------eeecCC----------------------CCEEEEeCCccCCCCCCH
Confidence            478999999985 68999999             888765                      467899999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCC
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDE  204 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~  204 (230)
                      .+||.||++||||+.+  ..+..++.++...+.....+++|++.......  ....++.|+.++.|++++++.+++.+++
T Consensus        45 ~~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~w~~~~el~~~~~~~~  120 (137)
T cd03424          45 EEAARRELEEETGYEA--GDLEKLGSFYPSPGFSDERIHLFLAEDLSPGE--EGLLDEGEDIEVVLVPLDEALELLADGE  120 (137)
T ss_pred             HHHHHHHHHHHHCCCc--cceEEEeeEecCCcccCccEEEEEEEcccccc--cCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence            9999999999999999  78888888777666666778888888654321  0234567899999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHh
Q psy11834        205 VRSPSGFLFAMHWFLAA  221 (230)
Q Consensus       205 ~~~~~~~~~a~~~~~~~  221 (230)
                      +.. ..+++++..|++.
T Consensus       121 ~~~-~~~~~~~~~~~~~  136 (137)
T cd03424         121 IID-DATLIALLLWLAL  136 (137)
T ss_pred             Ccc-cHHHHHHHHHHHc
Confidence            865 5667777666654

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>KOG4432|consensus

Probab=99.90  E-value=1.2e-23  Score=185.81  Aligned_cols=188  Identities=31%  Similarity=0.515  Sum_probs=170.3

Q ss_pred             cCeeeEEEEEEeecCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCc-c--
Q psy11834         15 SQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIP-E--   91 (230)
Q Consensus        15 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~-~--   91 (230)
                      |+|++.-++.+..||..+.-      ++...-++|+|++++++..+++|+|             |||+++|-+++. +  
T Consensus         1 s~~~k~~~m~y~~~~~~r~~------e~~q~~~~v~ill~~r~~eq~l~vr-------------qfr~ai~~~~~s~~~~   61 (405)
T KOG4432|consen    1 SKYQKGMEMSYTLDGNSRVS------EFNQKMSSVSILLFHRDLEQFLLVR-------------QFRPAIFTASNSPENH   61 (405)
T ss_pred             CCcccCceEEEEecCchHHH------HHHhhccceEEEEEccchhhhehhh-------------hhchhheecccCCCCC
Confidence            68999999999999877766      7788899999999998889999999             999999988874 4  


Q ss_pred             cccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcC
Q psy11834         92 EDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD  171 (230)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~  171 (230)
                      ++.-+.|||+-||.+-++|+||+||.||+..|+.+-|..|+.||+||+++++++.++.+|....+.+...+|+|+|++++
T Consensus        62 ~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~e  141 (405)
T KOG4432|consen   62 GKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDE  141 (405)
T ss_pred             CcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecch
Confidence            89999999999999999999999999999999999999999999999999999999999999988888899999999999


Q ss_pred             cccccCCCCCCCceEEEEEEcHHHHHHHhhcC-CCCChHHHHHHHHHHHHh
Q psy11834        172 DMKVNSGGGVDEELIEVVEMGLEEAREYLAQD-EVRSPSGFLFAMHWFLAA  221 (230)
Q Consensus       172 ~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~-~~~~~~~~~~a~~~~~~~  221 (230)
                      .++++++++--.+.+..+-+++++++.++.-+ +...|++.++|++|+.+-
T Consensus       142 s~kis~gggv~~~~~~~~~~a~e~ar~~i~t~a~~~g~p~~l~~~~~me~V  192 (405)
T KOG4432|consen  142 SMKISEGGGVITKVYYPVNVAREIARPAIGTHAEVKGPPGVLFAFQWMELV  192 (405)
T ss_pred             hhccccCCceeeEEEEeehhhHHHHHHhhccCccccCCCeeeeHHHHHHHh
Confidence            99999888777778888889999999988754 456778899999988653

>PLN03143 nudix hydrolase; Provisional

Probab=99.89  E-value=2.2e-21  Score=173.64  Aligned_cols=162  Identities=20%  Similarity=0.230  Sum_probs=125.5

Q ss_pred             cCeeeEEEEEEe-ecCeEeecccccceeeEeecCeEEEEEEEcCCC--EEEEEEecCCcCCccccceecccceeccCCcc
Q psy11834         15 SQFIQPYSVKFV-QEALIKENQYCHPQFLITQHKDYYIVMNKITEA--QIIETRSSQFIQPYSVKFVQVLLSVYINSIPE   91 (230)
Q Consensus        15 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~--~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~   91 (230)
                      =.|++++...+. ++|....+      .++.++++|+|++....++  .++|+|             |||+++       
T Consensus       102 ~gflkv~~d~~~l~~G~~~~~------~v~~rg~aVaVL~~l~~~ge~~VlLVr-------------Q~R~pv-------  155 (291)
T PLN03143        102 IGFLKFKADIIDKETGQKVPG------IVFARGPAVAVLILLESEGETYAVLTE-------------QVRVPV-------  155 (291)
T ss_pred             eeEEEEEEEEEECCCCCEeeE------EEEEcCCeEEEEEEEeCCCCEEEEEEE-------------eEecCC-------
Confidence            468888888887 47865555      7788899999987732234  499999             999988       


Q ss_pred             cccCCccccccCCCCCCcEEEeeeeecCC-CCCHHHHHHHHHHhhhCCccCCCceEEEE---------EEEcCCCccCeE
Q psy11834         92 EDRTGSIDVTKYPAELGVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQ---------TFRSGVGSAGDR  161 (230)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~elPgG~VE~-GEs~~eAA~REl~EETGl~v~~~~l~~l~---------~~~~~~~~s~~~  161 (230)
                                     +.+.||||||++|+ +|++.+||+||++|||||.+...++..+.         .+++++|.+++.
T Consensus       156 ---------------g~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~  220 (291)
T PLN03143        156 ---------------GKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEE  220 (291)
T ss_pred             ---------------CcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCe
Confidence                           67899999999998 58999999999999999987546777774         789999999999


Q ss_pred             EEEEEEEEcCccc-c----c--CCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q psy11834        162 QTLFFVEVTDDMK-V----N--SGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA  223 (230)
Q Consensus       162 ~~~y~a~~~~~~~-~----~--~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~  223 (230)
                      +++|++...-+.. +    .  .+..+++|.+++.|++++++..++++      ++++.|+.++...|.
T Consensus       221 i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD------~ktl~al~l~~~~k~  283 (291)
T PLN03143        221 ISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTAD------AKVLMAIALYEMAKR  283 (291)
T ss_pred             EEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHh------HHHHHHHHHHHHHHh
Confidence            9999987432110 0    1  11236789999999999999999752      467777766655444

>KOG3041|consensus

Probab=99.86  E-value=1.1e-20  Score=158.45  Aligned_cols=155  Identities=19%  Similarity=0.182  Sum_probs=124.1

Q ss_pred             eecCeeeEEEEEEe-ecCeEeecccccceee-EeecCeEEEEEEEcCCC--EEEEEEecCCcCCccccceecccceeccC
Q psy11834         13 QSSQFIQPYSVKFV-QEALIKENQYCHPQFL-ITQHKDYYIVMNKITEA--QIIETRSSQFIQPYSVKFVQVLLSVYINS   88 (230)
Q Consensus        13 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~-~~~~~~v~vl~~~~~~~--~vll~r~~~~~~~~~~~~~q~r~~~~~~~   88 (230)
                      .+.+|+++.++.+. +.|+++.|...++..- ..+.|+|+|+..-..++  .++|++             |||+|.    
T Consensus        38 ~~~kWi~Lkkv~~qD~~GKir~wes~~Rttr~ea~~dgVaIl~il~~dG~~~ivL~k-------------QfRpP~----  100 (225)
T KOG3041|consen   38 SDGKWIRLKKVLYQDPTGKIRDWESVQRTTRVEARADGVAILAILESDGKPYIVLVK-------------QFRPPT----  100 (225)
T ss_pred             CCccEEEEEEEEEEcCCCceeeeehheecccccccCCeEEEEEEEecCCcEEEEEEE-------------eecCCC----
Confidence            78999999999998 5899999976664422 24679999988765444  899999             999998    


Q ss_pred             CcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEE
Q psy11834         89 IPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVE  168 (230)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~  168 (230)
                                        ++..+|+|+|.||.||++..||.|||+|||||.-+  ....--..+.+||.++...++.++.
T Consensus       101 ------------------Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gk--v~~~s~~~f~DPGltn~~~~iv~v~  160 (225)
T KOG3041|consen  101 ------------------GKICIELPAGLIDDGEDFEGAAIRELEEETGYKGK--VDMVSPTVFLDPGLTNCNLCIVVVD  160 (225)
T ss_pred             ------------------CcEEEEcccccccCCCchHHHHHHHHHHHhCccce--eeeccccEEcCCCCCCCceEEEEEE
Confidence                              79999999999999999999999999999999852  2222224677789999999998888


Q ss_pred             EcCccccc--C-CCCCCCceEEEEEEcHHHHHHHhhcCC
Q psy11834        169 VTDDMKVN--S-GGGVDEELIEVVEMGLEEAREYLAQDE  204 (230)
Q Consensus       169 ~~~~~~~~--~-~~~~~~E~~~v~wv~~eE~~~~~~~~~  204 (230)
                      ++.+..-+  + +..+++|.|++.-++..++.+.+.+-+
T Consensus       161 idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l~  199 (225)
T KOG3041|consen  161 IDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADLD  199 (225)
T ss_pred             ecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhhh
Confidence            87654312  2 234789999999999999998876543

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.82  E-value=1.9e-19  Score=144.89  Aligned_cols=120  Identities=14%  Similarity=0.118  Sum_probs=90.1

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      ..+|++++++ .++++||++             + |.+.                      .+..|++|||++++|||+.
T Consensus        13 ~~av~~vv~~-~~~~vLL~~-------------r-~~~~----------------------~~~~w~lPgG~ve~gEt~~   55 (142)
T cd04700          13 ARAAGAVILN-ERNDVLLVQ-------------E-KGGP----------------------KKGLWHIPSGAVEDGEFPQ   55 (142)
T ss_pred             eeeEEEEEEe-CCCcEEEEE-------------E-cCCC----------------------CCCeEECCceecCCCCCHH
Confidence            5688888887 467899988             5 3222                      3577999999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEEEc-CCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCC
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTFRS-GVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDE  204 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~~~-~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~  204 (230)
                      +||+||++||||+++  ..+..++.+.. .+.......++|++......   ......+|+.++.|++++++.+++.+|+
T Consensus        56 ~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~E~~~~~w~~~~el~~~~~~g~  130 (142)
T cd04700          56 DAAVREACEETGLRV--RPVKFLGTYLGRFDDGVLVLRHVWLAEPEGQT---LAPKFTDEIAEASFFSREDVAQLYAQGQ  130 (142)
T ss_pred             HHHHHHHHHhhCcee--eccEEEEEEEEEcCCCcEEEEEEEEEEecCCc---cccCCCCCEEEEEEECHHHhhhcccccc
Confidence            999999999999998  66666665432 12222344578888864221   1112346899999999999999999999


Q ss_pred             CCC
Q psy11834        205 VRS  207 (230)
Q Consensus       205 ~~~  207 (230)
                      +.+
T Consensus       131 i~~  133 (142)
T cd04700         131 LRM  133 (142)
T ss_pred             ccc
Confidence            986

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.78  E-value=4.6e-18  Score=137.87  Aligned_cols=131  Identities=13%  Similarity=0.136  Sum_probs=88.5

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      +.+++++++.+++++||+|             ++++                         + .|+||||++|+|||+.+
T Consensus         2 p~~gaii~~~~~~~vLLvr-------------~~~~-------------------------~-~W~lPGG~ve~gEs~~~   42 (145)
T cd03672           2 PVYGAIILNEDLDKVLLVK-------------GWKS-------------------------K-SWSFPKGKINKDEDDHD   42 (145)
T ss_pred             CeeEEEEEeCCCCEEEEEE-------------ecCC-------------------------C-CEECCCccCCCCcCHHH
Confidence            4567777775457999999             7543                         2 58999999999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCC-CCCceEEEEEEcHHHHHHHhhcC--
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGG-VDEELIEVVEMGLEEAREYLAQD--  203 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~-~~~E~~~v~wv~~eE~~~~~~~~--  203 (230)
                      ||+||++||||+.+  ..+.... .+...+..+..+++|++......  ..... .++|+.++.|++++++..++..-  
T Consensus        43 AA~REl~EETGl~v--~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~  117 (145)
T cd03672          43 CAIREVYEETGFDI--SKYIDKD-DYIELIIRGQNVKLYIVPGVPED--TPFEPKTRKEISKIEWFDIKDLPTKKNKKIP  117 (145)
T ss_pred             HHHHHHHHhhCccc--eeccccc-eeeecccCCcEEEEEEEecCCCC--cccCcCChhhhheEEEeeHHHhhhhhhhccc
Confidence            99999999999988  4433222 22223344556777777632211  11112 35789999999999999997764  


Q ss_pred             -----CCCChHHHHHHHHHHHHh
Q psy11834        204 -----EVRSPSGFLFAMHWFLAA  221 (230)
Q Consensus       204 -----~~~~~~~~~~a~~~~~~~  221 (230)
                           .+..-..++.++.-|++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~  140 (145)
T cd03672         118 GLNSNKFFMVIPFIKPLKKWINR  140 (145)
T ss_pred             cccccceEEEhHHHHHHHHHHHH
Confidence                 332224556677444443

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=6.7e-18  Score=130.71  Aligned_cols=114  Identities=17%  Similarity=0.197  Sum_probs=81.2

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      +|++++.+  ++++||+|             +.+.+.                      .+..|++|||++++||++.+|
T Consensus         2 ~v~~vi~~--~~~vLL~~-------------r~~~~~----------------------~~~~w~lPgG~ve~gE~~~~a   44 (120)
T cd04683           2 AVYVLLRR--DDEVLLQR-------------RANTGY----------------------MDGQWALPAGHLEKGEDAVTA   44 (120)
T ss_pred             cEEEEEEE--CCEEEEEE-------------ccCCCC----------------------CCCeEeCCccccCCCCCHHHH
Confidence            56777765  68999999             665433                      356899999999999999999


Q ss_pred             HHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEE-EEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834        128 AREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTL-FFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       128 A~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~-y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~  201 (230)
                      |.||++||||+.+.+..+..++.+....+.....+++ |.+......   ....+++|+.++.|++++++...+.
T Consensus        45 a~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~e~~~~~W~~~~~l~~~~~  116 (120)
T cd04683          45 AVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIGLFFTVRRWSGE---PRNCEPDKCAELRWFPLDALPDDTV  116 (120)
T ss_pred             HHHHHHHHHCCccChhheEEEEEEEecCCCCceEEEEEEEEEeecCc---cccCCCCcEeeEEEEchHHCcchhc
Confidence            9999999999998544777777655544333344444 445432211   1122456788999999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.76  E-value=9.5e-18  Score=130.43  Aligned_cols=123  Identities=23%  Similarity=0.303  Sum_probs=90.3

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      +|.+|.+++++. +++|||+|             +.+.+.                     ..+..|.+|||++++|||+
T Consensus         1 ~~~~v~~ii~~~-~~~vLl~~-------------r~~~~~---------------------~~~~~~~~pgG~i~~~E~~   45 (134)
T PF00293_consen    1 WRRAVGVIIFNE-DGKVLLIK-------------RSRSPI---------------------TFPGYWELPGGGIEPGESP   45 (134)
T ss_dssp             EEEEEEEEEEET-TTEEEEEE-------------ESTTSS---------------------SSTTEEESSEEEECTTSHH
T ss_pred             CCCEEEEEEEeC-CcEEEEEE-------------ecCCCC---------------------CCCCeEecceeeEEcCCch
Confidence            367899999985 55999999             776542                     1357899999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEE--EEEcCCCcc-CeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQ--TFRSGVGSA-GDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~--~~~~~~~~s-~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~  201 (230)
                      .+||+||+.||||+.+  .....+.  .+....+.. ....++|++.+......  ......|..++.|++++++.+++.
T Consensus        46 ~~aa~REl~EE~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~~~  121 (134)
T PF00293_consen   46 EEAARRELKEETGLDV--SPLELLGLFSYPSPSGDPEGEIVIFFIAELPSEQSE--IQPQDEEISEVKWVPPDELLELLL  121 (134)
T ss_dssp             HHHHHHHHHHHHSEEE--EEEEEEEEEEEEETTTESSEEEEEEEEEEEEEEESE--CHTTTTTEEEEEEEEHHHHHHHHH
T ss_pred             hhhHHhhhhhccccee--cccccceeeeecccCCCcccEEEEEEEEEEeCCccc--cCCCCccEEEEEEEEHHHhhhchh
Confidence            9999999999999998  4444433  333332222 35677777776543211  122334999999999999999999


Q ss_pred             cCCCC
Q psy11834        202 QDEVR  206 (230)
Q Consensus       202 ~~~~~  206 (230)
                      .+..+
T Consensus       122 ~~~~~  126 (134)
T PF00293_consen  122 NGRIR  126 (134)
T ss_dssp             TTHHH
T ss_pred             Ccchh
Confidence            87553

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1.1e-17  Score=131.70  Aligned_cols=117  Identities=17%  Similarity=0.189  Sum_probs=88.7

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEe-eeeecCCCCCHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEF-CAGIVDKNKSLAE  126 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el-PgG~VE~GEs~~e  126 (230)
                      +++|++++ .++++||.+             +.....                     ..+..|++ |||++++||++.+
T Consensus         2 ~~~v~i~~-~~~~iLl~~-------------R~~~~~---------------------~~~g~w~~~~GG~ve~gE~~~~   46 (126)
T cd04697           2 ATYIFVFN-SEGKLCVHK-------------RTLTKD---------------------WCPGYWDIAFGGVVQAGESYLQ   46 (126)
T ss_pred             eEEEEEEc-CCCeEEEEE-------------CCCCCC---------------------CCCCcccCcCCcccCCCCCHHH
Confidence            57888888 478999977             322211                     02345888 6899999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCC
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR  206 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~  206 (230)
                      ||+||++||||+.+  ..+..++.+...........++|.+.....     ....++|+.++.|++++++.+++..+++.
T Consensus        47 aa~REl~EEtGl~~--~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~E~~~~~w~~~~el~~~~~~~~~~  119 (126)
T cd04697          47 NAQRELEEELGIDG--VQLTPLGLFYYDTDGNRVWGKVFSCVYDGP-----LKLQEEEVEEITWLSINEILQFKEGENIT  119 (126)
T ss_pred             HHHHHHHHHHCCCc--cccEEeeEEEecCCCceEEEEEEEEEECCC-----CCCCHhHhhheEEcCHHHHHHHhhcCccc
Confidence            99999999999998  688888877665444445567787765321     12356788899999999999999999885

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=2.4e-17  Score=137.47  Aligned_cols=110  Identities=17%  Similarity=0.239  Sum_probs=82.7

Q ss_pred             CcEE-EeeeeecCCCCCHHHHHHHHHHhhhCCccCCCc-eEEEEE---EE--cCCCccCeEEEEEEEEEcCcccccCCCC
Q psy11834        108 GVTL-EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEK-LEKIQT---FR--SGVGSAGDRQTLFFVEVTDDMKVNSGGG  180 (230)
Q Consensus       108 ~~~~-elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~-l~~l~~---~~--~~~~~s~~~~~~y~a~~~~~~~~~~~~~  180 (230)
                      +..| ++|||++++||++.+||+||++||||+.+.... +..++.   ++  .+.+..++.+++|.+.+....   ....
T Consensus        63 Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~---~~~~  139 (180)
T cd03676          63 PGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDF---IPAP  139 (180)
T ss_pred             CCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCC---eeCC
Confidence            3456 699999999999999999999999999883222 433332   22  233445677888888753221   1234


Q ss_pred             CCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q psy11834        181 VDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAA  221 (230)
Q Consensus       181 ~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~  221 (230)
                      +++|+.++.|++++|+.+++.+|++.. .++++++.|+..+
T Consensus       140 ~~~Ev~~~~~~~~~el~~~l~~g~~~~-~~~lv~~~~~~~~  179 (180)
T cd03676         140 QDGEVESFRLLTIDEVLRALKEGEFKP-NCALVTLDFLIRH  179 (180)
T ss_pred             CCCcEeEEEEECHHHHHHHHHcCCCCc-ccHhHHHHHHhhc
Confidence            678999999999999999999999984 7889999998764

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.75  E-value=1.1e-17  Score=134.67  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=82.9

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      .+.+|++++++. ++++||+|             +.+.                         +..|++|||++|+|||+
T Consensus         6 ~~~~v~~vi~~~-~~~vLl~~-------------r~~~-------------------------~~~W~lPgG~ve~gEs~   46 (148)
T PRK09438          6 RPVSVLVVIYTP-DLGVLMLQ-------------RADD-------------------------PDFWQSVTGSLEEGETP   46 (148)
T ss_pred             CceEEEEEEEeC-CCeEEEEE-------------ecCC-------------------------CCcEeCCcccCCCCCCH
Confidence            467888898884 77899998             4321                         24689999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEE-------EEE------cCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEE
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQ-------TFR------SGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEM  191 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~-------~~~------~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv  191 (230)
                      .+||+||++||||+.+....+..+.       .++      ..++..+..+++|++.....     .....+|..++.|+
T Consensus        47 ~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~E~~~~~W~  121 (148)
T PRK09438         47 AQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHE-----RPVVLTEHLAYQWL  121 (148)
T ss_pred             HHHHHHHHHHHhCcCccccceeecccccccccccchhhhhccccccCCceeEEEEEecCCC-----CccccCcccceeeC
Confidence            9999999999999988433333321       111      12344556778898875421     12234488999999


Q ss_pred             cHHHHHHHhhcC
Q psy11834        192 GLEEAREYLAQD  203 (230)
Q Consensus       192 ~~eE~~~~~~~~  203 (230)
                      +++++.+++...
T Consensus       122 ~~~e~~~~~~~~  133 (148)
T PRK09438        122 DAREAAALTKSW  133 (148)
T ss_pred             CHHHHHHHhcCh
Confidence            999999987544

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=3.3e-17  Score=127.97  Aligned_cols=113  Identities=11%  Similarity=0.088  Sum_probs=78.8

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      .+|++++++ .++++||++             +.+.+                       ....|++|||++|+||++.+
T Consensus         3 ~~~~~~i~~-~~~~vLL~~-------------r~~~~-----------------------~~~~w~lPgG~ve~gEt~~e   45 (125)
T cd04679           3 VGCGAAILR-DDGKLLLVK-------------RLRAP-----------------------EAGHWGIPGGKVDWMEAVED   45 (125)
T ss_pred             eEEEEEEEC-CCCEEEEEE-------------ecCCC-----------------------CCCeEeCCeeeccCCCCHHH
Confidence            467778777 368999999             54422                       24679999999999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEEEcCC--CccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTFRSGV--GSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~~~~~--~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~  201 (230)
                      ||+||++||||+.+  .....++.+....  .......++|++......   ....+++|+.++.|++++++.+.+.
T Consensus        46 aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~E~~~~~W~~~~~l~~~l~  117 (125)
T cd04679          46 AVVREIEEETGLSI--HSTRLLCVVDHIIEEPPQHWVAPVYLAENFSGE---PRLMEPDKLLELGWFALDALPQPLT  117 (125)
T ss_pred             HHHHHHHHHHCCCc--ccceEEEEEeecccCCCCeEEEEEEEEeecCCc---cccCCCccccEEEEeCHHHCCchhH
Confidence            99999999999998  5555554432211  122334456777754321   1112456888999999999976554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.74  E-value=1.3e-16  Score=125.89  Aligned_cols=91  Identities=24%  Similarity=0.286  Sum_probs=63.5

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE  187 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~  187 (230)
                      +..|++|||++++||++.+||.||++||||+.+....+.....+...........++|++.......   ....+.|+.+
T Consensus        23 ~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~e~~~   99 (134)
T cd03675          23 GLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAELLEHLP---DQPLDSGIVR   99 (134)
T ss_pred             CceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEEECCCCC---CCCCCCCcee
Confidence            4679999999999999999999999999999984333333333332221222334567777653211   1123568899


Q ss_pred             EEEEcHHHHHHHhh
Q psy11834        188 VVEMGLEEAREYLA  201 (230)
Q Consensus       188 v~wv~~eE~~~~~~  201 (230)
                      +.|++++++..+..
T Consensus       100 ~~w~~~~el~~~~~  113 (134)
T cd03675         100 AHWLTLEEILALAA  113 (134)
T ss_pred             eEEEeHHHHHhhhh
Confidence            99999999999876

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.3e-17  Score=127.14  Aligned_cols=108  Identities=17%  Similarity=0.166  Sum_probs=81.8

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      ++.+++++. ++++||+|             +..                         .+ .|++|||++++||++.+|
T Consensus         2 ~~~~~i~~~-~~~vLL~~-------------r~~-------------------------~~-~w~~PgG~ve~gEt~~~a   41 (120)
T cd04680           2 GARAVVTDA-DGRVLLVR-------------HTY-------------------------GP-GWYLPGGGLERGETFAEA   41 (120)
T ss_pred             ceEEEEECC-CCeEEEEE-------------ECC-------------------------CC-cEeCCCCcCCCCCCHHHH
Confidence            567788874 67999998             432                         12 688999999999999999


Q ss_pred             HHHHHHhhhCCccCCC-ceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834        128 AREEVLEECGYDVPVE-KLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       128 A~REl~EETGl~v~~~-~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~  201 (230)
                      |+||++||||+.+  . .+..++.+..........+++|.+......    ...+++|+.++.|++++++.+++.
T Consensus        42 a~REl~EEtG~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~E~~~~~w~~~~~l~~~~~  110 (120)
T cd04680          42 ARRELLEELGIRL--AVVAELLGVYYHSASGSWDHVIVFRARADTQP----VIRPSHEISEARFFPPDALPEPTT  110 (120)
T ss_pred             HHHHHHHHHCCcc--ccccceEEEEecCCCCCceEEEEEEecccCCC----ccCCcccEEEEEEECHHHCcccCC
Confidence            9999999999999  6 666666665554445567788888754321    123567899999999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=5.2e-17  Score=126.35  Aligned_cols=88  Identities=19%  Similarity=0.091  Sum_probs=68.4

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||||++++||++.+||.||++||||+.+  ..+.++..++...+ ....+++|.+....      +....+|..
T Consensus        25 ~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~E~~   95 (117)
T cd04691          25 DPGKLNIPGGHIEAGESQEEALLREVQEELGVDP--LSYTYLCSLYHPTS-ELQLLHYYVVTFWQ------GEIPAQEAA   95 (117)
T ss_pred             CCCeEECcceeecCCCCHHHHHHHHHHHHHCCCc--ccceEEEEEeccCC-CeEEEEEEEEEEec------CCCCccccc
Confidence            3567999999999999999999999999999997  67777777766544 44567777777432      122346888


Q ss_pred             EEEEEcHHHHHHHhhcC
Q psy11834        187 EVVEMGLEEAREYLAQD  203 (230)
Q Consensus       187 ~v~wv~~eE~~~~~~~~  203 (230)
                      ++.|++++++..+...+
T Consensus        96 ~~~W~~~~~l~~~~~~~  112 (117)
T cd04691          96 EVHWMTANDIVLASEAD  112 (117)
T ss_pred             ccEEcCHHHcchhhhhH
Confidence            99999999998765443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.73  E-value=1.5e-16  Score=130.92  Aligned_cols=113  Identities=22%  Similarity=0.259  Sum_probs=94.1

Q ss_pred             eeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCC
Q psy11834         41 FLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDK  120 (230)
Q Consensus        41 ~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~  120 (230)
                      ..+..++.|.|++..  ++++||++             |++                           ..|++|||++|+
T Consensus        19 ~~~~~~~~V~ii~~~--~~~~LL~~-------------~~~---------------------------~~~elPgG~vE~   56 (156)
T TIGR02705        19 PFSPNPNHVLVIPRY--KDQWLLTE-------------HKR---------------------------RGLEFPGGKVEP   56 (156)
T ss_pred             cccCCCCEEEEEEEE--CCEEEEEE-------------EcC---------------------------CcEECCceecCC
Confidence            345667888887775  56999999             653                           348999999999


Q ss_pred             CCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEE-EEcHHHHHHH
Q psy11834        121 NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVV-EMGLEEAREY  199 (230)
Q Consensus       121 GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~-wv~~eE~~~~  199 (230)
                      |||+.+||+||++||||+.+  ..+..++.+..+++.++...++|+|.+....       ..+|.+++. +++++++.++
T Consensus        57 gEt~~eaA~REl~EETG~~~--~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~~-------~~~e~~E~~~~~~~~~~~~~  127 (156)
T TIGR02705        57 GETSKEAAIREVMEETGAIV--KELHYIGQYEVEGESTDFVKDVYFAEVSALE-------SKDDYLETKGPVLLQEIPDI  127 (156)
T ss_pred             CCCHHHHHHHHHHHHhCcEe--eeeEEEEEEEecCCCcEEEEEEEEEEEeccc-------cCCCceeeEeEEEHHHHHHH
Confidence            99999999999999999999  8999999998888778888999999975221       225667777 7999999999


Q ss_pred             hhcCC
Q psy11834        200 LAQDE  204 (230)
Q Consensus       200 ~~~~~  204 (230)
                      +..|.
T Consensus       128 ~~~g~  132 (156)
T TIGR02705       128 IKADP  132 (156)
T ss_pred             HhcCC
Confidence            99997

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=4.3e-17  Score=127.82  Aligned_cols=119  Identities=16%  Similarity=0.151  Sum_probs=83.2

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCCCHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNKSLAE  126 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GEs~~e  126 (230)
                      .|.+++++ .++++||+|             +.+...                     ..+..|++| ||++++||++ +
T Consensus         2 ~v~v~~~~-~~g~vLl~~-------------R~~~~~---------------------~~pg~w~~p~GG~ve~gE~~-~   45 (127)
T cd04693           2 VVHVCIFN-SKGELLLQK-------------RSPNKD---------------------GWPGMWDLSVGGHVQAGETS-T   45 (127)
T ss_pred             eEEEEEEe-CCCeEEEEE-------------ccCCCC---------------------CCCCcccccCCCcCCCCCCH-H
Confidence            46777777 478999987             433221                     124578998 8999999999 9


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCC
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR  206 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~  206 (230)
                      ||+||++||||+.+....+..+..+..... .....++|++....    .....+.+|+.++.|++++++.+++.++++.
T Consensus        46 aa~REl~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~  120 (127)
T cd04693          46 AAEREVKEELGLELDFSELRPLFRYFFEAE-GFDDYYLFYADVEI----GKLILQKEEVDEVKFVSKDEIDGLIGHGEFT  120 (127)
T ss_pred             HHHHHHHHHhCCCcChhhcEEEEEEEeecC-CeEEEEEEEecCcc----cccccCHHHhhhEEEeCHHHHHHHHhcCCcc
Confidence            999999999999985556666666654332 12223344333211    1122356788999999999999999999986


Q ss_pred             C
Q psy11834        207 S  207 (230)
Q Consensus       207 ~  207 (230)
                      .
T Consensus       121 ~  121 (127)
T cd04693         121 P  121 (127)
T ss_pred             c
Confidence            3

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.72  E-value=4.4e-17  Score=133.34  Aligned_cols=115  Identities=17%  Similarity=0.082  Sum_probs=85.4

Q ss_pred             cCeEEEEEEEcC-CCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCC-CC
Q psy11834         46 HKDYYIVMNKIT-EAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKN-KS  123 (230)
Q Consensus        46 ~~~v~vl~~~~~-~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~G-Es  123 (230)
                      +.+|.|++++.+ ++++||+|             +.+...                     ..+..|++|||++|+| |+
T Consensus         2 ~~av~v~l~~~~~~~~vLL~~-------------R~~~~~---------------------~~~g~w~lPGG~ve~gdEs   47 (157)
T cd03426           2 RAAVLVLLVEREGELRVLLTK-------------RASHLR---------------------SHPGQVAFPGGKVDPGDED   47 (157)
T ss_pred             ceEEEEEEEeCCCceEEEEEE-------------cccccc---------------------cCCCcEECCCCCcCCCcCC
Confidence            567888888754 36999998             443321                     1345789999999999 99


Q ss_pred             HHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834        124 LAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       124 ~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      +.+||+||++||||+.+  ..+..++.+.......+..+++|++.....   .....+++|+.++.|++++++.+.
T Consensus        48 ~~eaa~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          48 PVATALREAEEEIGLPP--DSVEVLGRLPPYYTRSGFVVTPVVGLVPPP---LPLVLNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             HHHHHHHHHHHHhCCCc--cceEEEEECCCccccCCCEEEEEEEEECCC---CCCCCCHHHhheeEEEcHHHHhCc
Confidence            99999999999999998  777777765433334456677888876432   122335668999999999999875

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=9.3e-17  Score=129.06  Aligned_cols=125  Identities=18%  Similarity=0.194  Sum_probs=89.3

Q ss_pred             cCeEEEEEEEcCC--CEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEe-eeeecCCCC
Q psy11834         46 HKDYYIVMNKITE--AQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEF-CAGIVDKNK  122 (230)
Q Consensus        46 ~~~v~vl~~~~~~--~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el-PgG~VE~GE  122 (230)
                      |.+|.|++++..+  +++|+.+               |.....                   ..+..|++ |||++++||
T Consensus         2 h~~v~~~v~~~~~~~~~vLl~~---------------R~~~~~-------------------~~pg~W~~~~gG~ve~gE   47 (144)
T cd04692           2 HRTFHCWIITKDEGKGYVLLQK---------------RSANKK-------------------TYPGLWDISSAGHILAGE   47 (144)
T ss_pred             ceEEEEEEEEccCCCCEEEEEe---------------cCCCCC-------------------CCCCccccccCcccCCCC
Confidence            7889999998642  6777766               543210                   12457888 599999999


Q ss_pred             CHHHHHHHHHHhhhCCccCCCceEEEEEEEcCC-----CccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHH
Q psy11834        123 SLAEIAREEVLEECGYDVPVEKLEKIQTFRSGV-----GSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAR  197 (230)
Q Consensus       123 s~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~-----~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~  197 (230)
                      ++.+||+||++||||+.+....+..++.+....     .......++|++......  ......++|+.++.|++++++.
T Consensus        48 t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~  125 (144)
T cd04692          48 TPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPL--EEFTLQKEEVAGVVLIPLDEFA  125 (144)
T ss_pred             CHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccccCCCccceEEEEEEEeccCCh--hhcCCChhHhheEEEECHHHHH
Confidence            999999999999999987556777776644321     123345678888754211  1122356789999999999999


Q ss_pred             HHhhcCCCC
Q psy11834        198 EYLAQDEVR  206 (230)
Q Consensus       198 ~~~~~~~~~  206 (230)
                      +++.+....
T Consensus       126 ~~~~~~~~~  134 (144)
T cd04692         126 ELLEEEDHK  134 (144)
T ss_pred             HHHHcCCCC
Confidence            999887654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=1e-16  Score=123.66  Aligned_cols=108  Identities=15%  Similarity=0.119  Sum_probs=75.1

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      ++++++++  ++++||+|             +.+.+                       ....|++|||++++||++.+|
T Consensus         2 ~v~~ii~~--~~~vLl~~-------------r~~~~-----------------------~~~~w~~PgG~ie~gE~~~~a   43 (122)
T cd04673           2 AVGAVVFR--GGRVLLVR-------------RANPP-----------------------DAGLWSFPGGKVELGETLEQA   43 (122)
T ss_pred             cEEEEEEE--CCEEEEEE-------------EcCCC-----------------------CCCeEECCCcccCCCCCHHHH
Confidence            45667776  57999999             65532                       245789999999999999999


Q ss_pred             HHHHHHhhhCCccCCCceEEEEE--E-EcCCC---ccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHh
Q psy11834        128 AREEVLEECGYDVPVEKLEKIQT--F-RSGVG---SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYL  200 (230)
Q Consensus       128 A~REl~EETGl~v~~~~l~~l~~--~-~~~~~---~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~  200 (230)
                      |.||++||||+.+  ..+..++.  + +..++   .....++.|++......     ...+.|+.++.|++++++.++.
T Consensus        44 a~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~E~~~~~w~~~~el~~~~  115 (122)
T cd04673          44 ALRELLEETGLEA--EVGRLLTVVDVIERDAAGRVEFHYVLIDFLCRYLGGE-----PVAGDDALDARWVPLDELAALS  115 (122)
T ss_pred             HHHHHHHhhCcEe--eeceeEEEEEEeeccCCCccceEEEEEEEEEEeCCCc-----ccCCcccceeEEECHHHHhhCc
Confidence            9999999999998  44444443  2 22211   12234455666643221     1245688899999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=2.4e-16  Score=123.75  Aligned_cols=93  Identities=20%  Similarity=0.234  Sum_probs=64.3

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCC------CccCeEEEEEEEEEcCcccccCCCCC
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGV------GSAGDRQTLFFVEVTDDMKVNSGGGV  181 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~------~~s~~~~~~y~a~~~~~~~~~~~~~~  181 (230)
                      +..|++|||++++||++.+||.||+.||||+.+....+..+..+....      ...+...++|++..............
T Consensus        24 ~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~  103 (128)
T cd04687          24 GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKP  103 (128)
T ss_pred             CCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCC
Confidence            356899999999999999999999999999999655666665554221      12234456777776533211111123


Q ss_pred             CCceEEEEEEcHHHHHHHh
Q psy11834        182 DEELIEVVEMGLEEAREYL  200 (230)
Q Consensus       182 ~~E~~~v~wv~~eE~~~~~  200 (230)
                      +.+..++.|++++++.++-
T Consensus       104 ~~~~~~~~W~~~~~l~~~~  122 (128)
T cd04687         104 DPNQIGVEWLKLKELGDIP  122 (128)
T ss_pred             CCCEEeeEEEcHHHhCccc
Confidence            4556789999999987653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.71  E-value=2.3e-16  Score=127.27  Aligned_cols=114  Identities=20%  Similarity=0.244  Sum_probs=82.1

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      +.+|++++++ .++++||+|             +.+.                         +..|.+|||++++||++.
T Consensus         3 ~~~v~~ii~~-~~~~vLL~~-------------r~~~-------------------------~~~W~~PgG~~e~gE~~~   43 (147)
T cd03671           3 RPNVGVVLFN-EDGKVFVGR-------------RIDT-------------------------PGAWQFPQGGIDEGEDPE   43 (147)
T ss_pred             CceEEEEEEe-CCCEEEEEE-------------EcCC-------------------------CCCEECCcCCCCCCcCHH
Confidence            5688888887 478999999             5442                         146899999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEE-----EcCC----------CccCeEEEEEEEEEcCc-ccccCCCC-CCCceEEE
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTF-----RSGV----------GSAGDRQTLFFVEVTDD-MKVNSGGG-VDEELIEV  188 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~-----~~~~----------~~s~~~~~~y~a~~~~~-~~~~~~~~-~~~E~~~v  188 (230)
                      +||.||++||||+.+  .....++..     +..+          ...+...++|++.+... ..+. ... ++.|+.++
T Consensus        44 ~aA~REv~EEtGl~~--~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-l~~~~~~E~~~~  120 (147)
T cd03671          44 QAALRELEEETGLDP--DSVEIIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEID-LNAPEHPEFDEW  120 (147)
T ss_pred             HHHHHHHHHHHCCCc--CceEEEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCcccc-CCCCCCCCEeeE
Confidence            999999999999998  554444431     1111          02355678888876542 1111 112 36799999


Q ss_pred             EEEcHHHHHHHhh
Q psy11834        189 VEMGLEEAREYLA  201 (230)
Q Consensus       189 ~wv~~eE~~~~~~  201 (230)
                      .|++++++.+++.
T Consensus       121 ~W~~~~el~~~~~  133 (147)
T cd03671         121 RWVPLEELPDLIV  133 (147)
T ss_pred             EeCCHHHHHHhch
Confidence            9999999999864

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.71  E-value=1.3e-16  Score=124.45  Aligned_cols=89  Identities=22%  Similarity=0.175  Sum_probs=65.7

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEc-CC---CccCeEEEEEEEEEcCcccccCCCCCCCc
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRS-GV---GSAGDRQTLFFVEVTDDMKVNSGGGVDEE  184 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~-~~---~~s~~~~~~y~a~~~~~~~~~~~~~~~~E  184 (230)
                      ..|++|||++++||++.+||.||++||||+.+  ..+..++.+.. .+   ......+++|.+....... .  ..++.|
T Consensus        27 ~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~E  101 (131)
T cd03673          27 DDWSLPKGKLEPGETPPEAAVREVEEETGIRA--EVGDPLGTIRYWFSSSGKRVHKTVHWWLMRALGGEF-T--PQPDEE  101 (131)
T ss_pred             CcccCCCCccCCCCCHHHHHHHHHhhhhCCce--EecceEEEEEEeccCCCCCcceEEEEEEEEEcCCCc-c--cCCCCc
Confidence            35889999999999999999999999999988  55555554322 11   2345567778777643211 1  125678


Q ss_pred             eEEEEEEcHHHHHHHhhc
Q psy11834        185 LIEVVEMGLEEAREYLAQ  202 (230)
Q Consensus       185 ~~~v~wv~~eE~~~~~~~  202 (230)
                      +.++.|++++++.+++..
T Consensus       102 ~~~~~W~~~~el~~~~~~  119 (131)
T cd03673         102 VDEVRWLPPDEARDRLSY  119 (131)
T ss_pred             EEEEEEcCHHHHHHHcCC
Confidence            999999999999988763

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.71  E-value=2.3e-16  Score=132.25  Aligned_cols=116  Identities=23%  Similarity=0.211  Sum_probs=84.0

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      .|.++.++++| .++++||.+             +.....+                 +   .++.+.+|||++++|||+
T Consensus        36 ~h~~~~v~v~~-~~g~iLL~~-------------R~~~~~~-----------------~---pg~~~~~pGG~ve~GEs~   81 (180)
T PRK15393         36 RHRATYIVVHD-GMGKILVQR-------------RTETKDF-----------------L---PGMLDATAGGVVQAGEQL   81 (180)
T ss_pred             ceEEEEEEEEC-CCCeEEEEE-------------eCCCCCC-----------------C---CCcccccCCCcCCCCCCH
Confidence            47888888887 478999977             4332221                 0   133456899999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~  201 (230)
                      .+||+|||+||||+.+  ..+..++.++..........++|.+...     .....++.|+.++.|++++++.+++.
T Consensus        82 ~eAA~REL~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~-----~~~~~~~~E~~~~~W~~~~el~~~~~  151 (180)
T PRK15393         82 LESARREAEEELGIAG--VPFAEHGQFYFEDENCRVWGALFSCVSH-----GPFALQEEEVSEVCWMTPEEITARCD  151 (180)
T ss_pred             HHHHHHHHHHHHCCCC--ccceeceeEEecCCCceEEEEEEEEEeC-----CCCCCChHHeeEEEECCHHHHhhhhh
Confidence            9999999999999987  6666666665554444444566666532     12233577999999999999999875

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.71  E-value=1.9e-16  Score=122.98  Aligned_cols=114  Identities=18%  Similarity=0.171  Sum_probs=80.6

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      ++.+++++  ++++||+|             +.+.+                       .+..|.+|||++|+||++.+|
T Consensus         2 ~~~~ii~~--~~~vLl~~-------------~~~~~-----------------------~~~~w~lPgG~ve~gE~~~~a   43 (128)
T cd04684           2 GAYAVIPR--DGKLLLIQ-------------KNGGP-----------------------YEGRWDLPGGGIEPGESPEEA   43 (128)
T ss_pred             eeEEEEEe--CCEEEEEE-------------ccCCC-----------------------CCCeEECCCcccCCCCCHHHH
Confidence            45666676  49999999             65543                       246789999999999999999


Q ss_pred             HHHHHHhhhCCccCCCceEEEEE---EEcCCCc---cCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834        128 AREEVLEECGYDVPVEKLEKIQT---FRSGVGS---AGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       128 A~REl~EETGl~v~~~~l~~l~~---~~~~~~~---s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~  201 (230)
                      |+||++||||+.+  ..+..++.   ++..+..   .....++|.+.......  .....+.|..++.|++++++.+...
T Consensus        44 a~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~e~~~~~W~~~~~l~~~~~  119 (128)
T cd04684          44 LHREVLEETGLTV--EIGRRLGSASRYFYSPDGDYDAHHLCVFYDARVVGGAL--PVQEPGEDSHGAAWLPLDEAIERLL  119 (128)
T ss_pred             HHHHHHHHhCcEe--ecceeeeEEEEEEECCCCCeeccEEEEEEEEEEecCcc--ccCCCCCCceeeEEECHHHhhccCC
Confidence            9999999999998  55555543   2233322   24566778887653321  0123566788999999999986655


Q ss_pred             cC
Q psy11834        202 QD  203 (230)
Q Consensus       202 ~~  203 (230)
                      .+
T Consensus       120 ~~  121 (128)
T cd04684         120 SP  121 (128)
T ss_pred             CH
Confidence            43

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=2.5e-16  Score=124.02  Aligned_cols=112  Identities=15%  Similarity=0.126  Sum_probs=78.2

Q ss_pred             EEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHH
Q psy11834         49 YYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIA  128 (230)
Q Consensus        49 v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA  128 (230)
                      +++++++ .++++||+|             +.+.+.                       ...|++|||+++.||++.+||
T Consensus         3 ~~~vv~~-~~~~vLl~~-------------r~~~~~-----------------------~~~w~lPgG~ve~gEt~~~aa   45 (123)
T cd04671           3 VAAVILN-NQGEVLLIQ-------------EAKRSC-----------------------RGKWYLPAGRMEPGETIEEAV   45 (123)
T ss_pred             EEEEEEc-CCCEEEEEE-------------ecCCCC-----------------------CCeEECceeecCCCCCHHHHH
Confidence            5667676 478999999             665432                       457999999999999999999


Q ss_pred             HHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcC
Q psy11834        129 REEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       129 ~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~  203 (230)
                      .||++||||+.+  .....+..... .  .....++|.|...+.. ......++.|+.++.|++++++...+..+
T Consensus        46 ~REl~EEtG~~~--~~~~~~~~~~~-~--~~~~~~~f~a~~~~g~-~~~~~~~~~e~~~~~W~~~~el~~~~~~~  114 (123)
T cd04671          46 KREVKEETGLDC--EPTTLLSVEEQ-G--GSWFRFVFTGNITGGD-LKTEKEADSESLQARWYSNKDLPLPLRAH  114 (123)
T ss_pred             HHHHHHHHCCee--ecceEEEEEcc-C--CeEEEEEEEEEEeCCe-EccCCCCCcceEEEEEECHHHCCCccchh
Confidence            999999999999  55544443222 2  2245567777755322 11112245688899999999995444333

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.70  E-value=2e-16  Score=125.61  Aligned_cols=111  Identities=21%  Similarity=0.176  Sum_probs=80.7

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      +|.+++.+ .++++||+|             +.+.+                        ...|.+|||++++||++.+|
T Consensus         2 ~v~i~l~~-~~~~vLL~~-------------r~~~~------------------------~~~w~lPgG~ie~gEt~~~a   43 (131)
T cd03429           2 AVIVLVID-GGDRILLAR-------------QPRFP------------------------PGMYSLLAGFVEPGESLEEA   43 (131)
T ss_pred             eEEEEEEe-CCCEEEEEE-------------ecCCC------------------------CCcCcCCcccccCCCCHHHH
Confidence            46666666 358999999             65432                        23577999999999999999


Q ss_pred             HHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCC
Q psy11834        128 AREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV  205 (230)
Q Consensus       128 A~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~  205 (230)
                      |.||++||||+.+  ..+..++.+...  ..+...+.|++.....    ....++.|+.++.|++++++.++ ..+..
T Consensus        44 A~REl~EEtGl~~--~~~~~l~~~~~~--~~~~~~~~f~~~~~~~----~~~~~~~E~~~~~w~~~~el~~~-~~~~~  112 (131)
T cd03429          44 VRREVKEEVGIRV--KNIRYVGSQPWP--FPSSLMLGFTAEADSG----EIVVDDDELEDARWFSRDEVRAA-GEGLP  112 (131)
T ss_pred             HhhhhhhccCcee--eeeEEEeecCCC--CCceEEEEEEEEEcCC----cccCCchhhhccEeecHHHHhhc-ccCCc
Confidence            9999999999999  777777653222  1244567788876531    12235678889999999999997 44433

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.70  E-value=4.6e-16  Score=127.46  Aligned_cols=115  Identities=19%  Similarity=0.217  Sum_probs=83.6

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      +.+|++++++ .++++||+|             +.+.                         +..|++|||++++||++.
T Consensus         8 ~~~v~~~i~~-~~g~vLL~~-------------r~~~-------------------------~~~w~~P~G~~~~gE~~~   48 (156)
T PRK00714          8 RPNVGIILLN-RQGQVFWGR-------------RIGQ-------------------------GHSWQFPQGGIDPGETPE   48 (156)
T ss_pred             CCeEEEEEEe-cCCEEEEEE-------------EcCC-------------------------CCeEECCcccCCCCcCHH
Confidence            5688888888 478999999             5432                         246899999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEEE--------------cCCCccCeEEEEEEEEEcCcc-cccCCCCCCCceEEEEE
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTFR--------------SGVGSAGDRQTLFFVEVTDDM-KVNSGGGVDEELIEVVE  190 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~~--------------~~~~~s~~~~~~y~a~~~~~~-~~~~~~~~~~E~~~v~w  190 (230)
                      +||.||++||||+.+  ..+..++.+.              ..++..+...++|++...... .+.....+++|+.++.|
T Consensus        49 ~aa~REl~EEtG~~~--~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W  126 (156)
T PRK00714         49 QAMYRELYEEVGLRP--EDVEILAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRW  126 (156)
T ss_pred             HHHHHHHHHHhCCCc--cceEEEEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEe
Confidence            999999999999988  6666555431              122334456778888864321 11111124579999999


Q ss_pred             EcHHHHHHHhh
Q psy11834        191 MGLEEAREYLA  201 (230)
Q Consensus       191 v~~eE~~~~~~  201 (230)
                      ++++++.+++.
T Consensus       127 ~~~del~~~~~  137 (156)
T PRK00714        127 VSYWYPLDQVV  137 (156)
T ss_pred             CCHHHHHHhch
Confidence            99999998763

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=5.3e-16  Score=121.33  Aligned_cols=86  Identities=22%  Similarity=0.252  Sum_probs=59.4

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCccccc-CCC----CCC
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVN-SGG----GVD  182 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~-~~~----~~~  182 (230)
                      ...|+||||++++||++.+||+||++||||+.+.  ....++.+.. .   +...++|.|......... ...    .++
T Consensus        24 ~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~--~~~~~~~~~~-~---~~~~~~f~~~~~~g~~~~~~~~e~~~~~~   97 (121)
T cd04669          24 KTYYVFPGGGIEEGETPEEAAKREALEELGLDVR--VEEIFLIVNQ-N---GRTEHYFLARVISGKLGLGVGEEFERQSD   97 (121)
T ss_pred             CCcEECCceeccCCCCHHHHHHHHHHHhhCeeEe--eeeEEEEEee-C---CcEEEEEEEEEECCeecCCCchhhcccCC
Confidence            3579999999999999999999999999999983  3333333222 1   234678888764322111 100    124


Q ss_pred             CceEEEEEEcHHHHHHH
Q psy11834        183 EELIEVVEMGLEEAREY  199 (230)
Q Consensus       183 ~E~~~v~wv~~eE~~~~  199 (230)
                      .+..++.|++++++..+
T Consensus        98 ~~~~~~~Wv~~~el~~l  114 (121)
T cd04669          98 DNQYHPVWVDLDQLETI  114 (121)
T ss_pred             CCceEEEEEEHHHcccC
Confidence            56788999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=1e-15  Score=120.57  Aligned_cols=89  Identities=21%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCce-EEEEEEEcCCCc----cCeEEEEEEEEEcCcccccCCCCCCC
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKL-EKIQTFRSGVGS----AGDRQTLFFVEVTDDMKVNSGGGVDE  183 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l-~~l~~~~~~~~~----s~~~~~~y~a~~~~~~~~~~~~~~~~  183 (230)
                      ..|.+|||++|+|||+.+||+||++||||+.+  ... ..++.+......    ....+++|.+......    ....+.
T Consensus        26 ~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~   99 (122)
T cd04666          26 GRWIVPKGGPEKDESPAEAAAREAWEEAGVRG--KIGKRPLGRFEYRKRSKNRPPRCEVAVFPLEVTEEL----DEWPEM   99 (122)
T ss_pred             CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcc--cccceEEEEEEeeecCCCCCceEEEEEEEEEEeccc----cCCccc
Confidence            35789999999999999999999999999988  444 666665432221    2445667777654321    122345


Q ss_pred             ceEEEEEEcHHHHHHHhhcC
Q psy11834        184 ELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       184 E~~~v~wv~~eE~~~~~~~~  203 (230)
                      +..++.|++++++.+++...
T Consensus       100 e~~~~~W~~~~ea~~~~~~~  119 (122)
T cd04666         100 HQRKRKWFSPEEAALLVEEP  119 (122)
T ss_pred             CceEEEEecHHHHHHhcCCh
Confidence            67899999999999988654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=5.5e-16  Score=121.67  Aligned_cols=118  Identities=22%  Similarity=0.155  Sum_probs=83.4

Q ss_pred             cCeEEEEEEEc-CCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         46 HKDYYIVMNKI-TEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        46 ~~~v~vl~~~~-~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      +++|+|++++. .++++||+|             +.+.                        .+..|++|||++++||++
T Consensus         1 ~~~~~v~~~~~~~~~~vLL~~-------------r~~~------------------------~~~~w~~PgG~ve~~Es~   43 (129)
T cd04664           1 PRSVLVVPYRLTGEGRVLLLR-------------RSDK------------------------YAGFWQSVTGGIEDGESP   43 (129)
T ss_pred             CcEEEEEEEEeCCCCEEEEEE-------------eCCC------------------------CCCcccccCcccCCCCCH
Confidence            35788898883 168999999             5443                        135688999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEEEE-----cCCC-ccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQTFR-----SGVG-SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE  198 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~~~-----~~~~-~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~  198 (230)
                      .+||.||++||||+.+  ..+..+....     .... ......++|++.+....    ....++|..++.|++++++.+
T Consensus        44 ~~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~E~~~~~W~~~~e~~~  117 (129)
T cd04664          44 AEAARREVAEETGLDP--ERLTLLDRGASIAFVEFTDNGRVWTEHPFAFHLPSDA----VVTLDWEHDAFEWVPPEEAAA  117 (129)
T ss_pred             HHHHHHHHHHHHCCCh--hheEEEeecccccccccCCCceEEEEeEEEEEcCCCC----cccCCccccccEecCHHHHHH
Confidence            9999999999999988  5555444321     1111 12345678888764321    112456788999999999999


Q ss_pred             HhhcCCCC
Q psy11834        199 YLAQDEVR  206 (230)
Q Consensus       199 ~~~~~~~~  206 (230)
                      ++..+..+
T Consensus       118 ~~~~~~~~  125 (129)
T cd04664         118 LLLWESNR  125 (129)
T ss_pred             HHcChhhh
Confidence            87765443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=6.3e-16  Score=123.50  Aligned_cols=111  Identities=19%  Similarity=0.136  Sum_probs=74.7

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      +|.++++++++..++++||+|             +.+.                          ..|.+|||++|+||++
T Consensus         1 ~~~~~~~~v~~~~~~~vLLv~-------------r~~~--------------------------~~w~lPgG~ve~gE~~   41 (138)
T cd03674           1 GHFTASAFVVNPDRGKVLLTH-------------HRKL--------------------------GSWLQPGGHIDPDESL   41 (138)
T ss_pred             CcEEEEEEEEeCCCCeEEEEE-------------EcCC--------------------------CcEECCceecCCCCCH
Confidence            367888999985338999999             5431                          2467999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEE-----EEEcCCCc------cC-eEEEEEEEEEcCcccccCCCCCCCceEEEEEEc
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQ-----TFRSGVGS------AG-DRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMG  192 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~-----~~~~~~~~------s~-~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~  192 (230)
                      .+||.||++||||+.+  ..+...+     .+....+.      .. ....+|++.......   ....++|..++.|++
T Consensus        42 ~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~---~~~~~~E~~~~~W~~  116 (138)
T cd03674          42 LEAALRELREETGIEL--LGLRPLSVLVDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADDV---APPKSDESDAVRWFP  116 (138)
T ss_pred             HHHHHHHHHHHHCCCc--ccceeccccccceeEeecCCCCCCCCCcEEEEEEEEEEccCccc---cCCCCCcccccEEEc
Confidence            9999999999999987  4443321     11111111      11 123357776432211   012466888999999


Q ss_pred             HHHHHHH
Q psy11834        193 LEEAREY  199 (230)
Q Consensus       193 ~eE~~~~  199 (230)
                      ++++..+
T Consensus       117 ~~el~~~  123 (138)
T cd03674         117 LDELASL  123 (138)
T ss_pred             HHHhhhc
Confidence            9999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=9.1e-16  Score=120.12  Aligned_cols=111  Identities=18%  Similarity=0.120  Sum_probs=73.6

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      ..+|++++++ .++++||+|             +...                        ....|++|||++++|||+.
T Consensus         2 ~~~~~~~v~~-~~~~vLl~~-------------r~~~------------------------~~~~w~~PGG~ve~gEt~~   43 (127)
T cd04670           2 TVGVGGLVLN-EKNEVLVVQ-------------ERNK------------------------TPNGWKLPGGLVDPGEDIF   43 (127)
T ss_pred             eeEEEEEEEc-CCCeEEEEE-------------ccCC------------------------CCCcEECCCccCCCCCCHH
Confidence            3467777777 368999998             4322                        1356899999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE  198 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~  198 (230)
                      +||.||++||||+.+  .....+...............+|++.+....  .....+++|..++.|++++++.+
T Consensus        44 ~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~E~~~~~w~~~~el~~  112 (127)
T cd04670          44 DGAVREVLEETGIDT--EFVSVVGFRHAHPGAFGKSDLYFICRLKPLS--FDINFDTSEIAAAKWMPLEEYIS  112 (127)
T ss_pred             HHHHHHHHHHHCCCc--ceeEEEEEEecCCCCcCceeEEEEEEEccCc--CcCCCChhhhheeEEEcHHHHhc
Confidence            999999999999988  5454444332222222222233444442111  11123567888999999999954

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=6.3e-16  Score=121.19  Aligned_cols=107  Identities=19%  Similarity=0.206  Sum_probs=75.0

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      +|++++++. ++++||++             +.+.+                       ....|++|||++++||++.+|
T Consensus         3 av~~~i~~~-~~~vLL~~-------------r~~~~-----------------------~~~~w~~PgG~ve~gEs~~~a   45 (130)
T cd04681           3 AVGVLILNE-DGELLVVR-------------RAREP-----------------------GKGTLDLPGGFVDPGESAEEA   45 (130)
T ss_pred             eEEEEEEcC-CCcEEEEE-------------ecCCC-----------------------CCCcEeCCceeecCCCCHHHH
Confidence            677888874 67999998             54432                       134689999999999999999


Q ss_pred             HHHHHHhhhCCccCCCceEEEEEEE---cCCCccCeEEE-EEEEEEcCcccccCCCCCCCceEEEEEEcHHHHH
Q psy11834        128 AREEVLEECGYDVPVEKLEKIQTFR---SGVGSAGDRQT-LFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAR  197 (230)
Q Consensus       128 A~REl~EETGl~v~~~~l~~l~~~~---~~~~~s~~~~~-~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~  197 (230)
                      |.||++||||+.+  ..+..++.+.   ...+.....++ +|++.....    ....+.+|+.++.|++++++.
T Consensus        46 a~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          46 LIREIREETGLKV--TELSYLFSLPNTYPYGGMEYDTLDLFFVCQVDDK----PIVKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             HHHHHHHHhCCcc--cceeEEEeecceeeeCCceeEEEEEEEEEEeCCC----CCcCChHHhheeEEecHHHCC
Confidence            9999999999998  6677666542   22222223333 455654322    112245688899999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=1.1e-15  Score=119.26  Aligned_cols=87  Identities=20%  Similarity=0.199  Sum_probs=64.2

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE  187 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~  187 (230)
                      +..|++|||++++||++.+||.||+.||||+.+....+.....+.. . ......++|.+......   .....++|+.+
T Consensus        28 ~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~-~-~~~~~~~~f~~~~~~~~---~~~~~~~E~~~  102 (122)
T cd04682          28 PGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPS-A-SPPGTEHVFVVPLTARE---DAILFGDEGQA  102 (122)
T ss_pred             CCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEeccc-C-CCCceEEEEEEEEecCC---CccccCchhhe
Confidence            4578999999999999999999999999999984334433333322 2 34557788888865321   12235778889


Q ss_pred             EEEEcHHHHHHH
Q psy11834        188 VVEMGLEEAREY  199 (230)
Q Consensus       188 v~wv~~eE~~~~  199 (230)
                      +.|++++++.+.
T Consensus       103 ~~W~~~~el~~~  114 (122)
T cd04682         103 LRLMTVEEFLAH  114 (122)
T ss_pred             eecccHHHHhhc
Confidence            999999999765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=1.5e-15  Score=118.74  Aligned_cols=86  Identities=23%  Similarity=0.151  Sum_probs=57.6

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc---cCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS---AGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~---s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      ..|++|||++++|||+.+||.||++||||+.+....+..+..+...+..   .......|++.....     ....++|.
T Consensus        26 ~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~  100 (125)
T cd04696          26 GLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHFVLFDFFARTDGT-----EVTPNEEI  100 (125)
T ss_pred             CcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEEEEEEEEEEecCC-----cccCCccc
Confidence            4689999999999999999999999999999843333222223222221   122234456664321     11234678


Q ss_pred             EEEEEEcHHHHHHH
Q psy11834        186 IEVVEMGLEEAREY  199 (230)
Q Consensus       186 ~~v~wv~~eE~~~~  199 (230)
                      .++.|++++++.++
T Consensus       101 ~~~~W~~~~el~~~  114 (125)
T cd04696         101 VEWEWVTPEEALDY  114 (125)
T ss_pred             ceeEEECHHHHhcC
Confidence            89999999999765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.66  E-value=2.2e-15  Score=126.45  Aligned_cols=120  Identities=15%  Similarity=0.176  Sum_probs=83.4

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCCC
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNKS  123 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GEs  123 (230)
                      .|.+++|++++ .++++||+|             +  ....               ..+    +..|.+| ||++++||+
T Consensus        33 ~h~av~v~i~~-~~g~vLL~r-------------R--~~~~---------------~~~----PG~w~~~~gG~ve~GEt   77 (184)
T PRK03759         33 LHLAFSCYLFD-ADGRLLVTR-------------R--ALSK---------------KTW----PGVWTNSCCGHPQPGES   77 (184)
T ss_pred             eeeEEEEEEEc-CCCeEEEEE-------------c--cCCC---------------CCC----CCcccccccCCCCCCCC
Confidence            47889998888 478999998             3  2110               011    2235565 899999999


Q ss_pred             HHHHHHHHHHhhhCCccCCCceEE-EEEEE----cCCCc-cCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHH
Q psy11834        124 LAEIAREEVLEECGYDVPVEKLEK-IQTFR----SGVGS-AGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAR  197 (230)
Q Consensus       124 ~~eAA~REl~EETGl~v~~~~l~~-l~~~~----~~~~~-s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~  197 (230)
                      +.+||+||++||||+++  ..+.. ++.+.    ...+. .+...++|++....     ....+++|+.++.|++++++.
T Consensus        78 ~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~-----~~~~~~~Ev~~~~W~~~~el~  150 (184)
T PRK03759         78 LEDAVIRRCREELGVEI--TDLELVLPDFRYRATDPNGIVENEVCPVFAARVTS-----ALQPNPDEVMDYQWVDPADLL  150 (184)
T ss_pred             HHHHHHHHHHHHhCCCc--cccccccceEEEEEecCCCceeeEEEEEEEEEECC-----CCCCChhHeeeEEEECHHHHH
Confidence            99999999999999988  44332 22211    11222 23456788887542     223356789999999999999


Q ss_pred             HHhhcCCCC
Q psy11834        198 EYLAQDEVR  206 (230)
Q Consensus       198 ~~~~~~~~~  206 (230)
                      +++.++...
T Consensus       151 ~~i~~~~~~  159 (184)
T PRK03759        151 RAVDATPWA  159 (184)
T ss_pred             HHHHhCCcc
Confidence            999999775

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.66  E-value=2.3e-15  Score=121.61  Aligned_cols=111  Identities=13%  Similarity=0.065  Sum_probs=74.5

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      +|++++++ .++++||+|             +.+.+                       .+..|.+|||++++|||+.+|
T Consensus        14 ~v~~vI~~-~~g~vLl~~-------------R~~~p-----------------------~~g~w~lPGG~ve~gEs~~~a   56 (144)
T cd03430          14 SIDLIVEN-EDGQYLLGK-------------RTNRP-----------------------AQGYWFVPGGRIRKNETLTEA   56 (144)
T ss_pred             EEEEEEEe-CCCeEEEEE-------------ccCCC-----------------------CCCcEECCCceecCCCCHHHH
Confidence            67788887 478999998             43221                       235688999999999999999


Q ss_pred             HHHHHHhhhCCccCCCceEEEEEE---EcC----CCcc-CeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834        128 AREEVLEECGYDVPVEKLEKIQTF---RSG----VGSA-GDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       128 A~REl~EETGl~v~~~~l~~l~~~---~~~----~~~s-~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      |+||++||||+.+....+..++.+   +..    ++.. +....+|.+.....    .....+.|..++.|++++++.++
T Consensus        57 a~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~~~W~~~~el~~~  132 (144)
T cd03430          57 FERIAKDELGLEFLISDAELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSN----ELLLPDEQHSEYQWLTSDELLAD  132 (144)
T ss_pred             HHHHHHHHHCCCcccccceEEEEEEEEeccccccCCCccEEEEEEEEEEEcCC----cccCCchhccEeEEecHHHHhcC
Confidence            999999999998854422333322   211    1122 22334455654322    11225678889999999999854

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.65  E-value=1.4e-15  Score=134.38  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=85.1

Q ss_pred             ccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeee
Q psy11834         37 CHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAG  116 (230)
Q Consensus        37 ~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG  116 (230)
                      |....+....++|.+++.+  ++++||+|             +.|.+                        ...|.+|||
T Consensus       123 c~~~~yp~~~paViv~V~~--~~~iLL~r-------------r~~~~------------------------~g~wslPgG  163 (256)
T PRK00241        123 CRERYYPRIAPCIIVAVRR--GDEILLAR-------------HPRHR------------------------NGVYTVLAG  163 (256)
T ss_pred             CCCEECCCCCCEEEEEEEe--CCEEEEEE-------------ccCCC------------------------CCcEeCccc
Confidence            3333444444566555553  68999999             76643                        245789999


Q ss_pred             ecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHH
Q psy11834        117 IVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEA  196 (230)
Q Consensus       117 ~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~  196 (230)
                      ++|+|||+++||+||++||||+++  ..+.+++.....  ..+...+.|.+.....    +...+++|+.++.|++++++
T Consensus       164 ~vE~GEs~eeAa~REv~EEtGl~v--~~~~~~~s~~~~--~p~~lm~~f~a~~~~~----~~~~~~~Ei~~a~W~~~del  235 (256)
T PRK00241        164 FVEVGETLEQCVAREVMEESGIKV--KNLRYVGSQPWP--FPHSLMLGFHADYDSG----EIVFDPKEIADAQWFRYDEL  235 (256)
T ss_pred             CCCCCCCHHHHhhhhhhhccCcee--eeeEEEEeEeec--CCCeEEEEEEEEecCC----cccCCcccEEEEEEECHHHC
Confidence            999999999999999999999999  788887765332  2344667888886432    12235679999999999998


Q ss_pred             HHHhh
Q psy11834        197 REYLA  201 (230)
Q Consensus       197 ~~~~~  201 (230)
                      ..+..
T Consensus       236 ~~lp~  240 (256)
T PRK00241        236 PLLPP  240 (256)
T ss_pred             cccCC
Confidence            75433

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.64  E-value=2e-15  Score=118.17  Aligned_cols=91  Identities=25%  Similarity=0.248  Sum_probs=66.2

Q ss_pred             EEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEE----EEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQ----TFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~----~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      .|++|||++++|||+.+||.||++||||+.+  ..+..+.    .+.......+..+++|++.......   ...+ +|.
T Consensus        28 ~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~-~E~  101 (130)
T cd03428          28 HWDFPKGHVEPGEDDLEAALRETEEETGITA--EQLFIVLGFKETLNYQVRGKLKTVTYFLAELRPDVE---VKLS-EEH  101 (130)
T ss_pred             cCcCCcCCCCCCCCHHHHHHHHHHHHHCCCh--hhhhhhccceeEEEccccCcceEEEEEEEEeCCCCc---cccc-cce
Confidence            4789999999999999999999999999998  5544432    2222222345667788888652211   1123 688


Q ss_pred             EEEEEEcHHHHHHHhhcCCCC
Q psy11834        186 IEVVEMGLEEAREYLAQDEVR  206 (230)
Q Consensus       186 ~~v~wv~~eE~~~~~~~~~~~  206 (230)
                      .++.|++++++.+++..+.++
T Consensus       102 ~~~~W~~~~e~~~~~~~~~~~  122 (130)
T cd03428         102 QDYRWLPYEEALKLLTYEDLK  122 (130)
T ss_pred             eeEEeecHHHHHHHcCchhHH
Confidence            999999999999998766554

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.64  E-value=3.4e-15  Score=123.23  Aligned_cols=112  Identities=11%  Similarity=0.025  Sum_probs=73.9

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      +|.+++.+ .+++|||+|             +-.. .                      ....|+||||+|++|||+.+|
T Consensus        19 ~v~~vI~~-~~g~VLL~k-------------R~~~-~----------------------~~g~W~lPGG~VE~GEt~~~A   61 (159)
T PRK15434         19 SLDFIVEN-SRGEFLLGK-------------RTNR-P----------------------AQGYWFVPGGRVQKDETLEAA   61 (159)
T ss_pred             EEEEEEEC-CCCEEEEEE-------------ccCC-C----------------------CCCcEECCceecCCCCCHHHH
Confidence            67777776 468999998             3211 1                      246799999999999999999


Q ss_pred             HHHHHHhhhCCccCCCceEEEE--E-EEcCC-Cc---c-CeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834        128 AREEVLEECGYDVPVEKLEKIQ--T-FRSGV-GS---A-GDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       128 A~REl~EETGl~v~~~~l~~l~--~-~~~~~-~~---s-~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      |+||++||||+.+.......++  . ++... ..   . .....+|.+.....    .....+.|..++.|++++++.+.
T Consensus        62 a~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g----~~~~~~~E~~~~~W~~~~el~~~  137 (159)
T PRK15434         62 FERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEE----DLLLPDEQHDDYRWLTPDALLAS  137 (159)
T ss_pred             HHHHHHHHHCCccccccceEEEEEEeecccccCCCccceEEEEEEEEEEecCC----cccCChHHeeEEEEEeHHHhhhc
Confidence            9999999999987322222222  2 22211 11   1 12344566665321    11224568999999999999865


Q ss_pred             h
Q psy11834        200 L  200 (230)
Q Consensus       200 ~  200 (230)
                      .
T Consensus       138 ~  138 (159)
T PRK15434        138 D  138 (159)
T ss_pred             c
Confidence            3

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=5.2e-15  Score=115.52  Aligned_cols=86  Identities=16%  Similarity=0.140  Sum_probs=59.0

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEE---EEcCCCc-cCeEEEEEEEEEcCcccccCCCCCCCc
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT---FRSGVGS-AGDRQTLFFVEVTDDMKVNSGGGVDEE  184 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~---~~~~~~~-s~~~~~~y~a~~~~~~~~~~~~~~~~E  184 (230)
                      ..|++|||++|+||++.+||.||++||||+++  .....++.   ++...+. .....++|++....... ......++|
T Consensus        23 ~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~e   99 (125)
T cd04689          23 PHYFLPGGHVEPGETAENALRRELQEELGVAV--SDGRFLGAIENQWHEKGVRTHEINHIFAVESSWLAS-DGPPQADED   99 (125)
T ss_pred             CCEECCCCcCCCCCCHHHHHHHHHHHHhCcee--eccEEEEEEeeeeccCCceEEEEEEEEEEEcccccc-cCCccCccc
Confidence            35889999999999999999999999999998  55555543   2222232 23345677776542210 111124567


Q ss_pred             eEEEEEEcHHHHH
Q psy11834        185 LIEVVEMGLEEAR  197 (230)
Q Consensus       185 ~~~v~wv~~eE~~  197 (230)
                      +.++.|++++++.
T Consensus       100 ~~~~~W~~~~el~  112 (125)
T cd04689         100 HLSFSWVPVSDLS  112 (125)
T ss_pred             eEEEEEccHHHcc
Confidence            8999999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.64  E-value=2.2e-15  Score=119.10  Aligned_cols=86  Identities=14%  Similarity=0.060  Sum_probs=61.1

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcC-CC-ccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSG-VG-SAGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~-~~-~s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      ...|++|||++++||++.+||+||++||||+.+  ..+..++.+... ++ ......++|.+......     .....|.
T Consensus        25 ~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~~~e~   97 (137)
T cd03427          25 WGGWNGPGGKVEPGETPEECAIRELKEETGLTI--DNLKLVGIIKFPFPGEEERYGVFVFLATEFEGE-----PLKESEE   97 (137)
T ss_pred             CCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEe--ecceEEEEEEEEcCCCCcEEEEEEEEECCcccc-----cCCCCcc
Confidence            456899999999999999999999999999999  555555554322 22 23445666776643211     1124555


Q ss_pred             EEEEEEcHHHHHHHh
Q psy11834        186 IEVVEMGLEEAREYL  200 (230)
Q Consensus       186 ~~v~wv~~eE~~~~~  200 (230)
                      .++.|++++++.++.
T Consensus        98 ~~~~W~~~~el~~~~  112 (137)
T cd03427          98 GILDWFDIDDLPLLP  112 (137)
T ss_pred             ccceEEcHhhccccc
Confidence            789999999988653

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.64  E-value=3.7e-15  Score=122.75  Aligned_cols=121  Identities=16%  Similarity=0.190  Sum_probs=82.3

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCCC
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNKS  123 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GEs  123 (230)
                      .|.+|++++++ .++++||.|             +-....                 .    .+..|++| ||++++||+
T Consensus        29 ~~~~v~v~i~~-~~~~iLl~k-------------R~~~~~-----------------~----~Pg~w~~~~gG~ie~GEt   73 (165)
T cd02885          29 LHRAFSVFLFN-SKGRLLLQR-------------RALSKY-----------------T----FPGLWTNTCCSHPLPGEG   73 (165)
T ss_pred             ceeEEEEEEEc-CCCcEEEEe-------------ccCCCc-----------------c----CCCcccccccCCCCCCCC
Confidence            37888999888 478999988             322111                 1    23557786 899999999


Q ss_pred             HHHHHHHHHHhhhCCccCCCceEEEEEEE-c--C-CC-ccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834        124 LAEIAREEVLEECGYDVPVEKLEKIQTFR-S--G-VG-SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE  198 (230)
Q Consensus       124 ~~eAA~REl~EETGl~v~~~~l~~l~~~~-~--~-~~-~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~  198 (230)
                      +.+||+||++||||+.+....+. +..+. .  . .+ ......++|.+.....     ...+.+|+.++.|++++++.+
T Consensus        74 ~~eaa~REl~EEtGl~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~-----~~~~~~Ev~~~~w~~~~el~~  147 (165)
T cd02885          74 VKDAAQRRLREELGITGDLLELV-LPRFRYRAPDDGGLVEHEIDHVFFARADVT-----LIPNPDEVSEYRWVSLEDLKE  147 (165)
T ss_pred             HHHHHHHHHHHHhCCCccchhhc-cceEEEEEEcCCCceeeEEEEEEEEEeCCC-----CCCCccceeEEEEECHHHHHH
Confidence            99999999999999998433332 13221 1  1 11 1223456777764321     123567888999999999999


Q ss_pred             HhhcCCCC
Q psy11834        199 YLAQDEVR  206 (230)
Q Consensus       199 ~~~~~~~~  206 (230)
                      ++..+.-.
T Consensus       148 ~~~~~~~~  155 (165)
T cd02885         148 LVAAAPEA  155 (165)
T ss_pred             HHHhCchh
Confidence            99998544

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=2.7e-15  Score=116.61  Aligned_cols=91  Identities=21%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEE-EEEcCCCc-cCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQ-TFRSGVGS-AGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~-~~~~~~~~-s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      +..|++|||++++||++.+||.||++||||+.+  .....+. ...+.... .....++|.+.....     ....+.|.
T Consensus        28 ~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~  100 (129)
T cd04699          28 PGKWELPGGKVEEGETFEEALKREVYEETGLTV--TPFLRYPSTVTHEDSGVYNVIYLVFVCEALSG-----AVKLSDEH  100 (129)
T ss_pred             CCcCcCCccCccCCCCHHHHHHHHHHHhhCcEE--EeeeeeeEEEEEcCCCEEEEEEEEEEeeecCC-----cccCChhh
Confidence            567899999999999999999999999999988  4444432 22322221 222334445443211     11245677


Q ss_pred             EEEEEEcHHHHHHHhhcCCC
Q psy11834        186 IEVVEMGLEEAREYLAQDEV  205 (230)
Q Consensus       186 ~~v~wv~~eE~~~~~~~~~~  205 (230)
                      .++.|++++++..+...+..
T Consensus       101 ~~~~w~~~~el~~~~~~~~~  120 (129)
T cd04699         101 EEYAWVTLEELAILKADILF  120 (129)
T ss_pred             eEEEEecHHHhhhhhccccc
Confidence            88999999999766655544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=3.9e-15  Score=116.62  Aligned_cols=112  Identities=20%  Similarity=0.219  Sum_probs=75.9

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      ..++++++++. ++++||++             +  ..                        ...|.||||++++|||+.
T Consensus         7 ~~~~~~~v~~~-~~~vLL~~-------------r--~~------------------------~~~w~~PgG~v~~gEt~~   46 (132)
T cd04677           7 LVGAGVILLNE-QGEVLLQK-------------R--SD------------------------TGDWGLPGGAMELGESLE   46 (132)
T ss_pred             ccceEEEEEeC-CCCEEEEE-------------e--cC------------------------CCcEECCeeecCCCCCHH
Confidence            56777777773 67999987             3  21                        134889999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEE-----Ec--CCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTF-----RS--GVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE  198 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~-----~~--~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~  198 (230)
                      +||.||++||||+.+  .....++.+     +.  ..+.....+.+|++......   .....++|..++.|++++++.+
T Consensus        47 ~aa~REl~EE~Gi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~e~~~  121 (132)
T cd04677          47 ETARRELKEETGLEV--EELELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFGG---KLVPDGDETLELKFFSLDELPE  121 (132)
T ss_pred             HHHHHHHHHHhCCee--eeeEEEEEecCCceeecCCCCcEEEEEEEEEEEeccCC---cccCCCCceeeEEEEChhHCcc
Confidence            999999999999998  555554432     22  11222234445555432111   1123567889999999999987


Q ss_pred             Hhhc
Q psy11834        199 YLAQ  202 (230)
Q Consensus       199 ~~~~  202 (230)
                      ++..
T Consensus       122 ~~~~  125 (132)
T cd04677         122 LINP  125 (132)
T ss_pred             chhH
Confidence            7654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=4.2e-15  Score=117.86  Aligned_cols=109  Identities=20%  Similarity=0.149  Sum_probs=71.0

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      ++|.+++++  +++|||++             +.+.                          ..|+||||++|+||++.+
T Consensus         1 ~~~~~ii~~--~~~vLLv~-------------~~~~--------------------------~~w~lPgG~ve~gEt~~~   39 (131)
T cd04686           1 KAVRAIILQ--GDKILLLY-------------TKRY--------------------------GDYKFPGGGVEKGEDHIE   39 (131)
T ss_pred             CcEEEEEEE--CCEEEEEE-------------EcCC--------------------------CcEECccccCCCCCCHHH
Confidence            367778776  58999999             6542                          148899999999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEE---EcC--CC--ccCeEEEEEEEEEcCcccccCCCCCCCc---eEEEEEEcHHHH
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTF---RSG--VG--SAGDRQTLFFVEVTDDMKVNSGGGVDEE---LIEVVEMGLEEA  196 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~---~~~--~~--~s~~~~~~y~a~~~~~~~~~~~~~~~~E---~~~v~wv~~eE~  196 (230)
                      ||+||++||||+.+. .....++.+   +..  +.  ......++|+|......  .....++.|   .....|++++++
T Consensus        40 aa~REl~EEtGl~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~W~~~~ea  116 (131)
T cd04686          40 GLIRELQEETGATNI-RVIEKFGTYTERRPWRKPDADIFHMISYYYLCEVDAEL--GAQQLEDYEAELGMKPIWINIHEA  116 (131)
T ss_pred             HHHHHHHHHHCCccc-ccceEEEEEEeeccccCCCCceeEEEEEEEEEEEcCCc--CCcccchhhHhcCCCcEEecHHHH
Confidence            999999999999862 122233322   221  11  11234567777765321  111222222   246899999998


Q ss_pred             HHH
Q psy11834        197 REY  199 (230)
Q Consensus       197 ~~~  199 (230)
                      .+-
T Consensus       117 ~~~  119 (131)
T cd04686         117 IEH  119 (131)
T ss_pred             HHh
Confidence            863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=4.7e-15  Score=116.20  Aligned_cols=113  Identities=16%  Similarity=0.076  Sum_probs=75.9

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      -++++++++. ++++||+|             +... .                      ....|.+|||++++||++.+
T Consensus         3 ~~v~~ii~~~-~~~iLl~~-------------r~~~-~----------------------~~~~w~~PGG~ve~gEt~~~   45 (129)
T cd04678           3 VGVGVFVLNP-KGKVLLGK-------------RKGS-H----------------------GAGTWALPGGHLEFGESFEE   45 (129)
T ss_pred             eEEEEEEECC-CCeEEEEe-------------ccCC-C----------------------CCCeEECCcccccCCCCHHH
Confidence            4677888874 68999998             3321 1                      24568899999999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEEEc--CCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTFRS--GVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~~~--~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      ||.||++||||+.+  ..+..++.+..  ..........+|.+....... .....+.+|..++.|++++++..+
T Consensus        46 Aa~REl~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          46 CAAREVLEETGLHI--ENVQFLTVTNDVFEEEGKHYVTIFVKAEVDDGEA-EPNKMEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             HHHHHHHHHhCCcc--cceEEEEEEeEEeCCCCcEEEEEEEEEEeCCCCc-ccCCCCCceeCceEEeCHHHCCCc
Confidence            99999999999998  56555543322  111222344455566543211 111114567778999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.63  E-value=3.8e-15  Score=126.22  Aligned_cols=88  Identities=26%  Similarity=0.222  Sum_probs=68.8

Q ss_pred             cEEEeeeeecCCC-CCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834        109 VTLEFCAGIVDKN-KSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE  187 (230)
Q Consensus       109 ~~~elPgG~VE~G-Es~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~  187 (230)
                      ..|+||||++|++ |++++||+||++||||+..  ..+..++.+++.....+..++.|++.+....   ....+++|..+
T Consensus        60 G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~--~~~~~lg~l~~~~~~~~~~~~~~v~~~~~~~---~~~~d~~Ev~~  134 (190)
T PRK10707         60 GQVAFPGGAVDPTDASLIATALREAQEEVAIPP--SAVEVIGVLPPVDSSTGYQVTPVVGIIPPDL---PYRANEDEVAA  134 (190)
T ss_pred             CcEEcCCcccCCCcccHHHHHHHHHHHHHCCCc--cceEEEEEeeeeeccCCcEEEEEEEEECCCC---CCCCChhhhhe
Confidence            4679999999984 6899999999999999998  8999999877544455556666666654321   22346789999


Q ss_pred             EEEEcHHHHHHHhh
Q psy11834        188 VVEMGLEEAREYLA  201 (230)
Q Consensus       188 v~wv~~eE~~~~~~  201 (230)
                      +.|+|++++.++..
T Consensus       135 v~~vpl~e~~~~~~  148 (190)
T PRK10707        135 VFEMPLAEALHLGR  148 (190)
T ss_pred             EEEEeHHHHhCccc
Confidence            99999999988753

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.63  E-value=3.3e-15  Score=119.38  Aligned_cols=90  Identities=16%  Similarity=0.187  Sum_probs=55.3

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEE---E---EEcCCCccCeEEEEEEEEEcCcccccCCCCC
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQ---T---FRSGVGSAGDRQTLFFVEVTDDMKVNSGGGV  181 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~---~---~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~  181 (230)
                      +..|++|||++++|||+.+||.||++||||+.+....+....   .   .....+......++|++......  +.....
T Consensus        30 ~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  107 (141)
T PRK15472         30 PGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMIYLIFDCVSA--NRDVKI  107 (141)
T ss_pred             CCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEEEEEEEeecC--CCcccC
Confidence            467999999999999999999999999999987333222110   0   01111222233333322211010  111123


Q ss_pred             CCceEEEEEEcHHHHHHH
Q psy11834        182 DEELIEVVEMGLEEAREY  199 (230)
Q Consensus       182 ~~E~~~v~wv~~eE~~~~  199 (230)
                      .+|+.++.|++++++.++
T Consensus       108 ~~E~~~~~w~~~~el~~l  125 (141)
T PRK15472        108 NEEFQDYAWVKPEDLVHY  125 (141)
T ss_pred             ChhhheEEEccHHHhccc
Confidence            468889999999999876

>PLN02325 nudix hydrolase

Probab=99.63  E-value=6.5e-15  Score=119.15  Aligned_cols=89  Identities=19%  Similarity=0.128  Sum_probs=58.5

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEE---EcCCCccCeEEE-EEEEEEcCcccccCCCCCCC
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF---RSGVGSAGDRQT-LFFVEVTDDMKVNSGGGVDE  183 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~---~~~~~~s~~~~~-~y~a~~~~~~~~~~~~~~~~  183 (230)
                      ...|.+|||+++.||++.+||.||++||||+.+  ..+..++.+   +.......+.+. +|.+...+... .....+.+
T Consensus        33 ~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v--~~~~~l~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~-~~~~~e~~  109 (144)
T PLN02325         33 DSTFALPGGHLEFGESFEECAAREVKEETGLEI--EKIELLTVTNNVFLEEPKPSHYVTVFMRAVLADPSQ-VPQNLEPE  109 (144)
T ss_pred             CCeEECCceeCCCCCCHHHHHHHHHHHHHCCCC--cceEEEEEecceeecCCCCcEEEEEEEEEEECCCCC-CCCcCCch
Confidence            357999999999999999999999999999999  555544432   222222233344 44455432211 11122445


Q ss_pred             ceEEEEEEcHHHHHHH
Q psy11834        184 ELIEVVEMGLEEAREY  199 (230)
Q Consensus       184 E~~~v~wv~~eE~~~~  199 (230)
                      +..++.|++++++...
T Consensus       110 e~~~~~W~~~d~Lp~~  125 (144)
T PLN02325        110 KCYGWDWYEWDNLPEP  125 (144)
T ss_pred             hcCceEEEChHHCChh
Confidence            5678999999998864

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=7.5e-15  Score=113.08  Aligned_cols=84  Identities=20%  Similarity=0.290  Sum_probs=61.7

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCC---ccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVG---SAGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~---~s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      ..|.+|||++++||++.+||.||++||||+.+....+..++.+.....   ......++|++....      ......|+
T Consensus        23 ~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~------~~~~~~e~   96 (118)
T cd04690          23 DVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAELTG------EPVPAAEI   96 (118)
T ss_pred             CcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEcccC------CcCCCchh
Confidence            358899999999999999999999999999883323888877654321   123466777777542      11234678


Q ss_pred             EEEEEEcHHHHHH
Q psy11834        186 IEVVEMGLEEARE  198 (230)
Q Consensus       186 ~~v~wv~~eE~~~  198 (230)
                      .++.|++++++..
T Consensus        97 ~~~~W~~~~e~~~  109 (118)
T cd04690          97 EEIRWVDYDDPAD  109 (118)
T ss_pred             hccEEecHHHccc
Confidence            8899999999743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=6.7e-15  Score=115.04  Aligned_cols=89  Identities=17%  Similarity=0.115  Sum_probs=63.1

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEE---EcCCCc-cCeEEEEEEEEEcCcccccC---CCCC
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF---RSGVGS-AGDRQTLFFVEVTDDMKVNS---GGGV  181 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~---~~~~~~-s~~~~~~y~a~~~~~~~~~~---~~~~  181 (230)
                      ..|++|||++++||++.+||.||+.||||+.+  .....++.+   +...+. .+...++|.+...+......   ...+
T Consensus        23 ~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  100 (126)
T cd04688          23 TFYRPPGGGIEFGESSEEALIREFKEELGLKI--EITRLLGVVENIFTYNGKPGHEIEFYYLVTLLDESLYQQDIEILEE  100 (126)
T ss_pred             CeEECCCccccCCCCHHHHHHHHHHHHhCCce--ecceeeEEEEEeeccCCcccEEEEEEEEEEeCCCcccccccceecc
Confidence            46899999999999999999999999999988  555544432   222222 34456788888754322110   0125


Q ss_pred             CCceEEEEEEcHHHHHHH
Q psy11834        182 DEELIEVVEMGLEEAREY  199 (230)
Q Consensus       182 ~~E~~~v~wv~~eE~~~~  199 (230)
                      +.|..++.|++++++..+
T Consensus       101 ~~e~~~~~W~~~~~l~~~  118 (126)
T cd04688         101 EGEKIVFRWIPIDELKEI  118 (126)
T ss_pred             CCCEEEEEEeeHHHcccC
Confidence            678999999999998843

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=6.9e-15  Score=116.11  Aligned_cols=81  Identities=20%  Similarity=0.057  Sum_probs=59.5

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE  187 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~  187 (230)
                      ...|++|||++|+||++.+||+||++||||+++  .....++ .+..+. .....++|++......     .....|..+
T Consensus        37 ~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~--~~~~~~~-~~~~~~-~~~~~~~f~~~~~~~~-----~~~~~e~~~  107 (130)
T cd04511          37 HGFWTLPAGFMENGETTEQGALRETWEEAGARV--EIDGLYA-VYSVPH-ISQVYMFYRARLLDLD-----FAPGPESLE  107 (130)
T ss_pred             CCeEECCcccccCCCCHHHHHHHHHHHHhCCEE--EeeeEEE-EEecCC-ceEEEEEEEEEEcCCc-----ccCCcchhc
Confidence            457999999999999999999999999999988  4444333 333333 2346677888865321     113456788


Q ss_pred             EEEEcHHHHH
Q psy11834        188 VVEMGLEEAR  197 (230)
Q Consensus       188 v~wv~~eE~~  197 (230)
                      +.|++++++.
T Consensus       108 ~~~~~~~~l~  117 (130)
T cd04511         108 VRLFTEEEIP  117 (130)
T ss_pred             eEEECHHHCC
Confidence            9999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=1.5e-14  Score=111.20  Aligned_cols=84  Identities=18%  Similarity=0.243  Sum_probs=64.3

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV  188 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v  188 (230)
                      ..|++|||++++||++.+||.||++||||+.+  ..+..++.+...    ....++|++.+...    .......|..++
T Consensus        21 ~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~--~~~~~~~~~~~~----~~~~~~f~~~~~~~----~~~~~~~e~~~~   90 (112)
T cd04667          21 SRWALPGGKIEPGETPLQAARRELQEETGLQG--LDLLYLFHVDGG----STRHHVFVASVPPS----AQPKPSNEIADC   90 (112)
T ss_pred             CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcc--cceEEEEEEeCC----CEEEEEEEEEcCCc----CCCCCchheeEE
Confidence            35889999999999999999999999999988  777777665432    34557787775422    111245788999


Q ss_pred             EEEcHHHHHHHhhc
Q psy11834        189 VEMGLEEAREYLAQ  202 (230)
Q Consensus       189 ~wv~~eE~~~~~~~  202 (230)
                      .|++++++.++...
T Consensus        91 ~W~~~~el~~~~~~  104 (112)
T cd04667          91 RWLSLDALGDLNAS  104 (112)
T ss_pred             EEecHHHhhhcccc
Confidence            99999999886543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=1.1e-14  Score=115.11  Aligned_cols=88  Identities=19%  Similarity=0.088  Sum_probs=61.6

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceE---EEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLE---KIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~---~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      ..|.+|||++++|||+.+||.||++||||+++  ..+.   .+..++...........+|++.......    ...++|.
T Consensus        27 g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~E~  100 (131)
T cd04695          27 GFWCHVAGGVEAGETAWQAALRELKEETGISL--PELYNADYLEQFYEANDNRILMAPVFVGFVPPHQE----VVLNHEH  100 (131)
T ss_pred             CcEECCcccccCCCCHHHHHHHHHHHHhCCCc--cccccccceeeEeecCCceEEEEEEEEEEecCCCc----cccCchh
Confidence            45789999999999999999999999999988  4442   2233444333223345567776542211    1124688


Q ss_pred             EEEEEEcHHHHHHHhhc
Q psy11834        186 IEVVEMGLEEAREYLAQ  202 (230)
Q Consensus       186 ~~v~wv~~eE~~~~~~~  202 (230)
                      .++.|++++++.+++..
T Consensus       101 ~~~~W~~~~e~~~~~~~  117 (131)
T cd04695         101 TEYRWCSFAEALELAPF  117 (131)
T ss_pred             cccEecCHHHHHHhcCC
Confidence            89999999999988653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=1.4e-14  Score=113.14  Aligned_cols=88  Identities=20%  Similarity=0.098  Sum_probs=58.0

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEc---CCC-cc-CeEEEEEEEEEcCcccccCCCCCCC
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRS---GVG-SA-GDRQTLFFVEVTDDMKVNSGGGVDE  183 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~---~~~-~s-~~~~~~y~a~~~~~~~~~~~~~~~~  183 (230)
                      ..|++|||++++|||+.+||+||++||||+.+  .....++.+..   ... .. +....+|++.....     ......
T Consensus        24 ~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~   96 (123)
T cd04672          24 GLWSLPGGWADVGLSPAENVVKEVKEETGLDV--KVRKLAAVDDRNKHHPPPQPYQVYKLFFLCEILGG-----EFKPNI   96 (123)
T ss_pred             CcEeCCccccCCCCCHHHHHHHHHHHHhCCee--eEeEEEEEeccccccCCCCceEEEEEEEEEEecCC-----cccCCC
Confidence            35889999999999999999999999999988  33333332221   111 11 12234555654321     111236


Q ss_pred             ceEEEEEEcHHHHHHHhhcC
Q psy11834        184 ELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       184 E~~~v~wv~~eE~~~~~~~~  203 (230)
                      |+.++.|++++++..+..-.
T Consensus        97 E~~~~~W~~~~el~~l~~~~  116 (123)
T cd04672          97 ETSEVGFFALDDLPPLSEKR  116 (123)
T ss_pred             ceeeeEEECHHHCcccccCC
Confidence            78899999999998776443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=4.2e-14  Score=111.23  Aligned_cols=82  Identities=21%  Similarity=0.186  Sum_probs=66.3

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV  188 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v  188 (230)
                      ..|++|||++++||++.+||+||++||||+.+  ..+..++.+....+.......+|++.......    .....|+...
T Consensus        21 ~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~--~~~~~l~~~~~~~~~~~~~~~~y~a~~~~~~~----~~~~~E~~~~   94 (118)
T cd04665          21 RGWEFPGGHVEPGETIEEAARREVWEETGAEL--GSLTLVGYYQVDLFESGFETLVYPAVSAQLEE----KASYLETDGP   94 (118)
T ss_pred             CEEECCccccCCCCCHHHHHHHHHHHHHCCcc--CceEEEEEEEecCCCCcEEEEEEEEEEEeccc----ccccccccCc
Confidence            36999999999999999999999999999999  89999998877665566778889998754321    1245788889


Q ss_pred             EEEcHHHH
Q psy11834        189 VEMGLEEA  196 (230)
Q Consensus       189 ~wv~~eE~  196 (230)
                      .|++.+..
T Consensus        95 ~~~~~~~~  102 (118)
T cd04665          95 VLFKNEPE  102 (118)
T ss_pred             EEeccCCc
Confidence            99986554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.56  E-value=4.5e-14  Score=115.83  Aligned_cols=118  Identities=18%  Similarity=0.126  Sum_probs=81.8

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCCC
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNKS  123 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GEs  123 (230)
                      .|.+++++++| .++++||.|               |....               .    ..+..|++| ||++++|| 
T Consensus        26 ~h~~v~v~v~~-~~g~vLl~k---------------R~~~k---------------~----~~PG~W~~~~gG~v~~GE-   69 (158)
T TIGR02150        26 LHRAFSVFLFN-EEGQLLLQR---------------RALSK---------------I----TWPGVWTNSCCSHPLPGE-   69 (158)
T ss_pred             eEEEEEEEEEc-CCCeEEEEe---------------ccCCC---------------c----CCCCCccccccCCCCccc-
Confidence            48899999988 478999988               43320               0    134568887 89999999 


Q ss_pred             HHHHHHHHHHhhhCCccCCCceEEEEE--EEcC-CCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHh
Q psy11834        124 LAEIAREEVLEECGYDVPVEKLEKIQT--FRSG-VGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYL  200 (230)
Q Consensus       124 ~~eAA~REl~EETGl~v~~~~l~~l~~--~~~~-~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~  200 (230)
                       .+||.||++||||+.+....+..+..  +... +.......++|.+....     .....++|+.++.|++++++.+++
T Consensus        70 -~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g~~~~~~~f~~~~~~-----~~~~~~~Ev~~~~W~~~~el~~~~  143 (158)
T TIGR02150        70 -LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWGEHELCPVFFARAPV-----PLNPNPEEVAEYRWVSLEELKEIL  143 (158)
T ss_pred             -HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCCcEEEEEEEEEecCC-----cccCChhHeeeEEEeCHHHHHHHH
Confidence             49999999999999984433333332  2221 11123456777776432     122346699999999999999999


Q ss_pred             hcCC
Q psy11834        201 AQDE  204 (230)
Q Consensus       201 ~~~~  204 (230)
                      +...
T Consensus       144 ~~~~  147 (158)
T TIGR02150       144 KAPW  147 (158)
T ss_pred             hcCc
Confidence            9876

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.56  E-value=3.6e-14  Score=111.89  Aligned_cols=86  Identities=22%  Similarity=0.160  Sum_probs=58.2

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||||++++||++.+||.||+.||||+.+  .....++.+.+.........++|.+....      +.....|..
T Consensus        28 ~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~e~~   99 (135)
T PRK10546         28 QAGLWEFAGGKVEPGESQPQALIRELREELGIEA--TVGEYVASHQREVSGRRIHLHAWHVPDFH------GELQAHEHQ   99 (135)
T ss_pred             CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCcc--ccceeEEEEEEecCCcEEEEEEEEEEEec------Ccccccccc
Confidence            3567999999999999999999999999999998  43344444333222222234555554321      112234566


Q ss_pred             EEEEEcHHHHHHHh
Q psy11834        187 EVVEMGLEEAREYL  200 (230)
Q Consensus       187 ~v~wv~~eE~~~~~  200 (230)
                      ++.|++++++..+.
T Consensus       100 ~~~W~~~~el~~~~  113 (135)
T PRK10546        100 ALVWCTPEEALRYP  113 (135)
T ss_pred             eeEEcCHHHcccCC
Confidence            88999999998763

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.56  E-value=5.8e-14  Score=112.29  Aligned_cols=118  Identities=14%  Similarity=0.014  Sum_probs=76.2

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      .++.+++++. ++++||+|             +.+...                     ..+..|.+|||++++||++.+
T Consensus         1 ~~~~~~i~~~-~g~vLl~r-------------~~~~~~---------------------~~~~~w~~PgG~ve~gE~~~~   45 (133)
T cd04685           1 RAARVVLLDP-DDRVLLLR-------------GDDPDS---------------------PGPDWWFTPGGGVEPGESPEQ   45 (133)
T ss_pred             CeEEEEEEcC-CCeEEEEE-------------EeCCCC---------------------CCCCEEECCcCCCCCCCCHHH
Confidence            3678888884 78999998             443210                     024579999999999999999


Q ss_pred             HHHHHHHhhhCCcc-CCCceEEEEE--EEcCCCccCeEEEEEEEEEcCcccccCC--CCCCCceEEEEEEcHHHHHHH
Q psy11834        127 IAREEVLEECGYDV-PVEKLEKIQT--FRSGVGSAGDRQTLFFVEVTDDMKVNSG--GGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       127 AA~REl~EETGl~v-~~~~l~~l~~--~~~~~~~s~~~~~~y~a~~~~~~~~~~~--~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      ||.||+.||||+.+ ....+.....  +...........++|++...........  ..+..++.++.|++++++.+.
T Consensus        46 a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          46 AARRELREETGITVADLGPPVWRRDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             HHHHHHHHHHCCccccccceEEEEEEEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            99999999999988 3233322212  2222222234566777775432211111  112345668999999998764

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=4.7e-14  Score=109.03  Aligned_cols=86  Identities=23%  Similarity=0.163  Sum_probs=57.0

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEE-------EEcCCCc-cCeEEEEEEEEEcCcccccCCCC
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT-------FRSGVGS-AGDRQTLFFVEVTDDMKVNSGGG  180 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~-------~~~~~~~-s~~~~~~y~a~~~~~~~~~~~~~  180 (230)
                      ..|++|||++++||++.+||.||++||||+.+  .....++.       +....+. ......+|++......    ...
T Consensus        25 ~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   98 (129)
T cd04676          25 GLWALPGGAVEPGESPADTAVREVREETGLDV--EVTGLVGIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGE----LRV   98 (129)
T ss_pred             CcEECCeeccCCCCCHHHHHHHHHHHHhCcee--EeeEEEEEeecccceeecCCCCcEEEEEEEEEEEeeCCe----ecC
Confidence            45889999999999999999999999999988  44433221       1111111 1223345555543211    112


Q ss_pred             CCCceEEEEEEcHHHHHHHh
Q psy11834        181 VDEELIEVVEMGLEEAREYL  200 (230)
Q Consensus       181 ~~~E~~~v~wv~~eE~~~~~  200 (230)
                      ...|..++.|++++++.++.
T Consensus        99 ~~~e~~~~~w~~~~el~~~~  118 (129)
T cd04676          99 GDDESLDVAWFDPDGLPPLL  118 (129)
T ss_pred             CCCceeEEEEEChhhCcccc
Confidence            45678899999999988764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=1.5e-13  Score=111.40  Aligned_cols=120  Identities=11%  Similarity=0.109  Sum_probs=77.2

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      +|+|++++ .++++||+|             +.+...                     ..+..|++|||++++||++.+|
T Consensus         3 ~v~viv~~-~~~~vLl~r-------------r~~~~~---------------------~~~g~w~~PgG~v~~~E~~~~a   47 (143)
T cd04694           3 GVAVLLQS-SDQKLLLTR-------------RASSLR---------------------IFPNVWVPPGGHVELGENLLEA   47 (143)
T ss_pred             EEEEEEEc-CCCEEEEEE-------------ECCCCC---------------------CCCCeEECcccccCCCCCHHHH
Confidence            56788787 478999999             543221                     1356789999999999999999


Q ss_pred             HHHHHHhhhCCccCCCc--eEEEEEE---EcC---CCcc-CeEEEEEEEEEcCcc--ccc-CCCCCCCceEEEEEEcHHH
Q psy11834        128 AREEVLEECGYDVPVEK--LEKIQTF---RSG---VGSA-GDRQTLFFVEVTDDM--KVN-SGGGVDEELIEVVEMGLEE  195 (230)
Q Consensus       128 A~REl~EETGl~v~~~~--l~~l~~~---~~~---~~~s-~~~~~~y~a~~~~~~--~~~-~~~~~~~E~~~v~wv~~eE  195 (230)
                      |+||++||||+.+....  +..++.+   ++.   .+.. +..+.+|+.......  ... .......|+.++.|+++++
T Consensus        48 a~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~  127 (143)
T cd04694          48 GLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSL  127 (143)
T ss_pred             HHHHHHHHHCCCccccccceeEEeeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHH
Confidence            99999999999883221  2333322   111   1111 234444444322110  000 1123457889999999999


Q ss_pred             HHHHhhc
Q psy11834        196 AREYLAQ  202 (230)
Q Consensus       196 ~~~~~~~  202 (230)
                      +.+++..
T Consensus       128 a~~~~~~  134 (143)
T cd04694         128 AKAVVSA  134 (143)
T ss_pred             HHHHHHh
Confidence            9999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.52  E-value=2.2e-13  Score=103.09  Aligned_cols=87  Identities=25%  Similarity=0.227  Sum_probs=62.2

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEE--EEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQ--TFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~--~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      ...|.+|||++++||++.++|.||++||+|+.+  .......  .+...........++|.+.......   ....+.|.
T Consensus        24 ~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~   98 (123)
T cd02883          24 GGLWELPGGGVEPGETLEEAAIREVREETGLDV--DVLRLLGVYEVESPDEGEHAVVFVFLARLVGGEP---TLLPPDEI   98 (123)
T ss_pred             CCeEeCCcccccCCCCHHHHHHHHHHHhhCccc--eeeeEEEEEEeeccCCCceEEEEEEEEEeCCCCc---CCCCCCcc
Confidence            357899999999999999999999999999988  4333333  3333323455667788887653321   11345677


Q ss_pred             EEEEEEcHHHHHHH
Q psy11834        186 IEVVEMGLEEAREY  199 (230)
Q Consensus       186 ~~v~wv~~eE~~~~  199 (230)
                      ....|++++++.++
T Consensus        99 ~~~~w~~~~~l~~~  112 (123)
T cd02883          99 SEVRWVTLDELPAL  112 (123)
T ss_pred             ceEEEEcHHHCccc
Confidence            78899999998874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.52  E-value=1.1e-13  Score=110.11  Aligned_cols=88  Identities=15%  Similarity=0.232  Sum_probs=60.3

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEE--EEEE-EcCC------CccCeEEEEEEEEEcCcccccCCC
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEK--IQTF-RSGV------GSAGDRQTLFFVEVTDDMKVNSGG  179 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~--l~~~-~~~~------~~s~~~~~~y~a~~~~~~~~~~~~  179 (230)
                      ..|+||||++++|||+.+||.||++||||+.+....+..  +..+ +..+      ...+..+++|.|...+...     
T Consensus        26 g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~-----  100 (132)
T cd04661          26 NHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFKARYMSGQF-----  100 (132)
T ss_pred             CeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEEEEEEecCcc-----
Confidence            579999999999999999999999999999873221111  1111 1111      1122467788888653311     


Q ss_pred             CCCCceEEEEEEcHHHHHHHhh
Q psy11834        180 GVDEELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       180 ~~~~E~~~v~wv~~eE~~~~~~  201 (230)
                      ....|+.++.|++++++..++.
T Consensus       101 ~~~~e~~~~~W~~~~el~~~l~  122 (132)
T cd04661         101 ELSQNQVDFKWLAKEELQKYLN  122 (132)
T ss_pred             ccCCCcceeEecCHHHHHhhcC
Confidence            1236788999999999998764

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.52  E-value=2.5e-13  Score=103.91  Aligned_cols=85  Identities=25%  Similarity=0.198  Sum_probs=61.9

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||||++++||++.+||.||+.||||+.+  .....++.+.+........+++|.+.....      .....|..
T Consensus        26 ~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~   97 (124)
T cd03425          26 LGGLWEFPGGKVEPGETPEQALVRELREELGIEV--EVGELLATVEHDYPDKRVTLHVFLVELWSG------EPQLLEHQ   97 (124)
T ss_pred             CCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEE--eccceEEEEEeeCCCCeEEEEEEEEeeeCC------CcccccCc
Confidence            3568999999999999999999999999999988  555556555443333444566776764321      11244567


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      ++.|++++++..+
T Consensus        98 ~~~W~~~~el~~~  110 (124)
T cd03425          98 ELRWVPPEELDDL  110 (124)
T ss_pred             eEEEeeHHHcccC
Confidence            8999999999764

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.49  E-value=4.6e-13  Score=103.79  Aligned_cols=85  Identities=13%  Similarity=0.068  Sum_probs=56.3

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||||++++||++.+||.||++||||+.+  .....++.+.+........+++|.+.....      .....|..
T Consensus        29 ~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~  100 (129)
T PRK10776         29 MAGKWEFPGGKIEAGETPEQALIRELQEEVGITV--QHATLFEKLEYEFPDRHITLWFWLVESWEG------EPWGKEGQ  100 (129)
T ss_pred             CCCeEECCceecCCCCCHHHHHHHHHHHHHCCce--ecceEEEEEEeeCCCcEEEEEEEEEEEECC------ccCCccCC
Confidence            3568999999999999999999999999999987  444444443332222222344454542211      11233556


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      ++.|++++++..+
T Consensus       101 ~~~W~~~~~l~~~  113 (129)
T PRK10776        101 PGRWVSQVALNAD  113 (129)
T ss_pred             ccEEecHHHCccC
Confidence            7899999998764

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.48  E-value=1.7e-13  Score=111.34  Aligned_cols=89  Identities=26%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCC--ccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVG--SAGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~--~s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      ...|.||||++|.||++++||+||++||||+++  ..+..++.+-....  .......+|++....+.   ....+.++.
T Consensus        34 ~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~--~~~~~~~v~~~~~rd~r~~~v~~~~~~~~~~g~---~~~~~~~d~  108 (145)
T COG1051          34 AGYWALPGGFVEIGETLEEAARRELKEETGLRV--RVLELLAVFDDPGRDPRGHHVSFLFFAAEPEGE---LLAGDGDDA  108 (145)
T ss_pred             CCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcc--cceeEEEEecCCCCCCceeEEEEEEEEEecCCC---cccCChhhH
Confidence            456899999999999999999999999999997  55555544333211  12334445555532211   111133356


Q ss_pred             EEEEEEcHHHHHHHhh
Q psy11834        186 IEVVEMGLEEAREYLA  201 (230)
Q Consensus       186 ~~v~wv~~eE~~~~~~  201 (230)
                      -++.|++.+++..+..
T Consensus       109 ~~~~~~~~~~l~~~~~  124 (145)
T COG1051         109 AEVGWFPLDELPELPL  124 (145)
T ss_pred             hhcceecHhHcccccc
Confidence            6789999999987544

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.48  E-value=7.1e-13  Score=105.57  Aligned_cols=60  Identities=17%  Similarity=0.136  Sum_probs=45.4

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcC
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD  171 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~  171 (230)
                      ...|++|||+++.||++.+||+||++||||+.+. ..+..+..+..+.   ...+++|++..+.
T Consensus        32 ~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~~~~~---~~~v~~fl~~~~~   91 (126)
T cd04662          32 LGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSLKQSG---GKVVHAWAVEADL   91 (126)
T ss_pred             CCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEEECCC---CeEEEEEEEEecC
Confidence            4679999999999999999999999999999884 3444444444332   2366777777653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>TIGR00586 mutt mutator mutT protein

Probab=99.48  E-value=5.9e-13  Score=103.53  Aligned_cols=85  Identities=13%  Similarity=-0.094  Sum_probs=58.1

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||||.+++||++.+||.||+.||||+.+  .....++.+.+..+......++|.+...+.      .....+..
T Consensus        29 ~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~------~~~~~~~~  100 (128)
T TIGR00586        29 FAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQ--HFSEFEKLEYEFYPRHITLWFWLLERWEGG------PPGKEGQP  100 (128)
T ss_pred             CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcc--eeeeEEEEEEEECCCcEEEEEEEEEEEcCC------CcCccccc
Confidence            4678999999999999999999999999999987  444444444443322233445555554321      11123445


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      ++.|++++++..+
T Consensus       101 ~~~W~~~~~l~~~  113 (128)
T TIGR00586       101 EEWWVLVGLLADD  113 (128)
T ss_pred             ccEEeCHHHCCcc
Confidence            6899999988765

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.43  E-value=2.7e-12  Score=117.66  Aligned_cols=90  Identities=14%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEE---EEEcCCCc---cCeEEEEEEEEEcCcccccCCCCC
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQ---TFRSGVGS---AGDRQTLFFVEVTDDMKVNSGGGV  181 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~---~~~~~~~~---s~~~~~~y~a~~~~~~~~~~~~~~  181 (230)
                      ...|.+|||++|+||++.+||+||++||||+++....+....   ..+..++.   .....++|++...... . .....
T Consensus       227 ~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~~~~~i~~~f~~~~~~~~-~-~~~~~  304 (340)
T PRK05379        227 KGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSLRGRTITHAFLFEFPAGE-L-PRVKG  304 (340)
T ss_pred             CCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCCCCcEEEEEEEEEecCCc-c-CccCC
Confidence            467899999999999999999999999999988444332211   12222321   2334566777654221 1 11123


Q ss_pred             CCceEEEEEEcHHHHHHH
Q psy11834        182 DEELIEVVEMGLEEAREY  199 (230)
Q Consensus       182 ~~E~~~v~wv~~eE~~~~  199 (230)
                      .+|..++.|++++++..+
T Consensus       305 ~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        305 GDDADKARWVPLAELLAM  322 (340)
T ss_pred             CCceeeEEEEEHHHhhhh
Confidence            457889999999999865

>PLN02791 Nudix hydrolase homolog

Probab=99.40  E-value=2.1e-12  Score=128.52  Aligned_cols=135  Identities=19%  Similarity=0.230  Sum_probs=96.0

Q ss_pred             eecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEE
Q psy11834         32 KENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTL  111 (230)
Q Consensus        32 ~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (230)
                      .....||.+-.  .|.++.|++++..++++||.|               |....               ..||    ..|
T Consensus        20 ~~R~evH~~Gl--~HrAvhVwIfn~~~gelLLQk---------------RS~~K---------------~~~P----G~W   63 (770)
T PLN02791         20 KPRGEVHRDGD--YHRAVHVWIYSESTQELLLQR---------------RADCK---------------DSWP----GQW   63 (770)
T ss_pred             ccHHhhccCCC--ceEEEEEEEEECCCCeEEEEE---------------ecCCC---------------CCCC----Ccc
Confidence            34455676654  489999999986568998877               44321               1233    345


Q ss_pred             Ee-eeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEc----CCC--ccCeEEEEEEEEEcCcccccCCCCCCCc
Q psy11834        112 EF-CAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRS----GVG--SAGDRQTLFFVEVTDDMKVNSGGGVDEE  184 (230)
Q Consensus       112 el-PgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~----~~~--~s~~~~~~y~a~~~~~~~~~~~~~~~~E  184 (230)
                      .+ |||+++.||++.+||.||++||+|+.++...+..++.+..    ..+  ..++.+++|++.........+..++++|
T Consensus        64 DiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eE  143 (770)
T PLN02791         64 DISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESE  143 (770)
T ss_pred             cCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhh
Confidence            55 7999999999999999999999999886666776665321    111  2346788898875433222223346789


Q ss_pred             eEEEEEEcHHHHHHHhhc
Q psy11834        185 LIEVVEMGLEEAREYLAQ  202 (230)
Q Consensus       185 ~~~v~wv~~eE~~~~~~~  202 (230)
                      +.++.|++++|+.+++..
T Consensus       144 V~~v~wvsl~El~~~l~~  161 (770)
T PLN02791        144 VSAVKYMSIEEYKSALAK  161 (770)
T ss_pred             hheeEEEcHHHHHHHHhc
Confidence            999999999999999986

>KOG3084|consensus

Probab=99.38  E-value=2.3e-13  Score=121.69  Aligned_cols=130  Identities=18%  Similarity=0.154  Sum_probs=88.7

Q ss_pred             eecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCC
Q psy11834         44 TQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKS  123 (230)
Q Consensus        44 ~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs  123 (230)
                      +..+.|.+++.++++.+.||.|             |.|++.                        ..|.++||.+|+|||
T Consensus       185 r~dPvVIm~li~~d~~~~LL~R-------------~~r~~~------------------------gl~t~lAGFlEpGES  227 (345)
T KOG3084|consen  185 RTDPVVIMLLIDHDGKHALLGR-------------QKRYPP------------------------GLWTCLAGFLEPGES  227 (345)
T ss_pred             CCCCeEEEEEEcCCCCEeeeec-------------ccCCCC------------------------chhhhhhccCCcccc
Confidence            4456667777888888999999             888765                        378899999999999


Q ss_pred             HHHHHHHHHHhhhCCccCCCceEEEEEEEcC-CCccCeEEEEEEEEEcCcccccCCCCCCC-ceEEEEEEcHHHHHHHhh
Q psy11834        124 LAEIAREEVLEECGYDVPVEKLEKIQTFRSG-VGSAGDRQTLFFVEVTDDMKVNSGGGVDE-ELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       124 ~~eAA~REl~EETGl~v~~~~l~~l~~~~~~-~~~s~~~~~~y~a~~~~~~~~~~~~~~~~-E~~~v~wv~~eE~~~~~~  201 (230)
                      ++|||+||++||||++|  +.+.+......+ .+.+-...++-++..+.  +   ...+.+ |+.++.|++.+|+.+.+.
T Consensus       228 ~eeav~REtwEEtGi~V--~~I~~~asQPWP~~p~SLMIgc~ala~~~~--~---I~vd~dlEleDaqwF~r~ev~~aL~  300 (345)
T KOG3084|consen  228 IEEAVRRETWEETGIEV--EVISYVASQPWPLMPQSLMIGCLALAKLNG--K---ISVDKDLELEDAQWFDREEVKSALT  300 (345)
T ss_pred             HHHHHHHHHHHHhCcee--eeEeeeecCCCCCCchHHHHHHHHHHhhCC--c---cccCcchhhhhcccccHHHHHHHHH
Confidence            99999999999999999  777654432221 22221111222333221  1   122334 888999999999999887


Q ss_pred             -cCCC---------CChHHHHHHHHH
Q psy11834        202 -QDEV---------RSPSGFLFAMHW  217 (230)
Q Consensus       202 -~~~~---------~~~~~~~~a~~~  217 (230)
                       .|..         -.|+++..|.++
T Consensus       301 ~kg~~Rv~~~~a~i~~P~~~aIA~qL  326 (345)
T KOG3084|consen  301 TKGLVRVQIEKALILIPPPFAIAHQL  326 (345)
T ss_pred             hcCCccccccCcceecCChhHHHHHH
Confidence             3333         245566666543

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.34  E-value=3e-12  Score=113.68  Aligned_cols=86  Identities=19%  Similarity=0.166  Sum_probs=66.7

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV  188 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v  188 (230)
                      ..+.+-+|.||+|||+++|+.||++||+|+++  .++.++++..-....+  .+--|++++..++    -..++.|+.++
T Consensus       168 g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V--~~vrY~~SQPWPfP~S--LMigf~aey~sge----I~~d~~Eleda  239 (279)
T COG2816         168 GMYSLLAGFVEPGETLEQAVAREVFEEVGIKV--KNVRYVGSQPWPFPHS--LMLGFMAEYDSGE----ITPDEGELEDA  239 (279)
T ss_pred             cceeeeeecccCCccHHHHHHHHHHHhhCeEE--eeeeEEeccCCCCchh--hhhhheeeecccc----ccCCcchhhhc
Confidence            46779999999999999999999999999999  9999988744332222  3345667765432    23467899999


Q ss_pred             EEEcHHHHHHHhhc
Q psy11834        189 VEMGLEEAREYLAQ  202 (230)
Q Consensus       189 ~wv~~eE~~~~~~~  202 (230)
                      .|++.+|++.++..
T Consensus       240 ~WFs~~evl~~L~~  253 (279)
T COG2816         240 RWFSRDEVLPALPP  253 (279)
T ss_pred             cccCHhHHhhhcCC
Confidence            99999998877765

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.34  E-value=1.6e-11  Score=97.78  Aligned_cols=89  Identities=13%  Similarity=0.109  Sum_probs=57.2

Q ss_pred             EEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccC---CCCCCCceE
Q psy11834        110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNS---GGGVDEELI  186 (230)
Q Consensus       110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~---~~~~~~E~~  186 (230)
                      .|+||||++++||++.+||+||++||||+.+..... ....+.+.....+...+++++.+.....-..   ...++++.+
T Consensus        25 ~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~E~~~i  103 (126)
T cd04663          25 GFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDY-ILHVWERRFYQKRHFWHLTLCEVDQDLPDSWVHFVQDDGGHEF  103 (126)
T ss_pred             cEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeee-cceeeeCCEeeccEEEEEEEEEecCCCcccccCcccCCCCceE
Confidence            379999999999999999999999999998711111 1111111111245566677776532211111   123577788


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      .+.|++++++...
T Consensus       104 ~~~Wv~l~~~~~~  116 (126)
T cd04663         104 RFFWVDLASCLDE  116 (126)
T ss_pred             EEEEEcccccccc
Confidence            8889999998543

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.31  E-value=3.9e-11  Score=94.53  Aligned_cols=43  Identities=19%  Similarity=0.313  Sum_probs=35.5

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEE
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT  150 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~  150 (230)
                      ...|+||||++++||++.+||.||+.||||+.+....+..+..
T Consensus        28 ~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~~   70 (118)
T cd04674          28 RGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFDV   70 (118)
T ss_pred             CCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEEE
Confidence            4568999999999999999999999999999984334444433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK08999 hypothetical protein; Provisional

Probab=99.29  E-value=2.5e-11  Score=109.15  Aligned_cols=85  Identities=20%  Similarity=0.172  Sum_probs=59.0

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||||++++||++.+||.||++||||+.+  .....+....+.........++|.+.....      .....|..
T Consensus        30 ~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~--~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~------~~~~~e~~  101 (312)
T PRK08999         30 QGGLWEFPGGKVEPGETVEQALARELQEELGIEV--TAARPLITVRHDYPDKRVRLDVRRVTAWQG------EPHGREGQ  101 (312)
T ss_pred             CCCeEECCccCCCCCCCHHHHHHHHHHHHhCCce--ecceeEEEEEEEcCCCeEEEEEEEEEEecC------cccCccCC
Confidence            4578999999999999999999999999999988  444444443332222334566776653211      12234556


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      ++.|++++++.++
T Consensus       102 ~~~Wv~~~el~~~  114 (312)
T PRK08999        102 PLAWVAPDELAVY  114 (312)
T ss_pred             ccEEecHHHcccC
Confidence            7899999988753

>PLN02709 nudix hydrolase

Probab=99.29  E-value=2.9e-11  Score=104.72  Aligned_cols=89  Identities=19%  Similarity=0.095  Sum_probs=65.3

Q ss_pred             CcEEEeeeeecCCC-CCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        108 GVTLEFCAGIVDKN-KSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       108 ~~~~elPgG~VE~G-Es~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      +..|.||||++|++ +++.+||+||++||+|+..  ..+..++.+......++..++-|++.+...... ....+++|.-
T Consensus        66 ~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~--~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~~~-~~~~np~EV~  142 (222)
T PLN02709         66 PGEVALPGGKRDEEDKDDIATALREAREEIGLDP--SLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAF-KPLPNPAEVE  142 (222)
T ss_pred             CCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCc--hheEEeeecCCeECCCCCEEEEEEEEecCCCCc-cccCChhhhh
Confidence            45678999999996 5799999999999999988  666666654332234566788888876532111 1123678999


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      ++.|+|++.+.+-
T Consensus       143 ~vf~vPL~~ll~~  155 (222)
T PLN02709        143 EIFDVPLEMFLKD  155 (222)
T ss_pred             eeEEecHHHHhCC
Confidence            9999999988753

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.27  E-value=1.6e-10  Score=101.77  Aligned_cols=121  Identities=11%  Similarity=0.170  Sum_probs=76.9

Q ss_pred             eecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCC
Q psy11834         44 TQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNK  122 (230)
Q Consensus        44 ~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GE  122 (230)
                      ..|.+++|+++|. ++++||.|               |....               ..|    +..|+.. +|++..||
T Consensus        54 l~Hra~~v~i~n~-~g~lLLQk---------------Rs~~K---------------~~~----Pg~Wd~s~~GHp~~ge   98 (247)
T PLN02552         54 LLHRAFSVFLFNS-KYELLLQQ---------------RAATK---------------VTF----PLVWTNTCCSHPLYGQ   98 (247)
T ss_pred             ceEEEEEEEEEcC-CCeEEEEE---------------ecCCC---------------CCC----CcceecccCCcccccc
Confidence            3589999999984 78999977               54431               112    3345444 45554443


Q ss_pred             C-----------------HHHHHHHHHHhhhCCccCC---CceEEEEEEEcCCCc-----------cCeEEEEEEEEEcC
Q psy11834        123 S-----------------LAEIAREEVLEECGYDVPV---EKLEKIQTFRSGVGS-----------AGDRQTLFFVEVTD  171 (230)
Q Consensus       123 s-----------------~~eAA~REl~EETGl~v~~---~~l~~l~~~~~~~~~-----------s~~~~~~y~a~~~~  171 (230)
                      +                 ..+||+|||.||||+.+..   ..+..++.+......           .++.+++|+.....
T Consensus        99 ~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~  178 (247)
T PLN02552         99 DPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVR  178 (247)
T ss_pred             ccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecC
Confidence            2                 6789999999999998632   236666543322211           13555665543221


Q ss_pred             cccccCCCCCCCceEEEEEEcHHHHHHHhhc
Q psy11834        172 DMKVNSGGGVDEELIEVVEMGLEEAREYLAQ  202 (230)
Q Consensus       172 ~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~  202 (230)
                      .   .+...+++|..++.|++++++.+++..
T Consensus       179 ~---~~l~lq~eEV~~~~wvs~~el~~~~~~  206 (247)
T PLN02552        179 D---VKVNPNPDEVADVKYVNREELKEMMRK  206 (247)
T ss_pred             C---CcccCCHHHhheEEEEeHHHHHHHHhh
Confidence            1   122346789999999999999999873

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.18  E-value=4.5e-10  Score=86.28  Aligned_cols=96  Identities=26%  Similarity=0.333  Sum_probs=59.9

Q ss_pred             cEEEeeeeecCCCCCHHH-HHHHHHHhhhCCccCCCceEEEEEEEcCCCccC---eEEEEEEEEEcCcccccCCC-CC--
Q psy11834        109 VTLEFCAGIVDKNKSLAE-IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAG---DRQTLFFVEVTDDMKVNSGG-GV--  181 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~e-AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~---~~~~~y~a~~~~~~~~~~~~-~~--  181 (230)
                      ..|++|||++|+||++.+ ||+||++||||+.+....+..++.+........   .....++............. ..  
T Consensus        36 ~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (161)
T COG0494          36 GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSA  115 (161)
T ss_pred             CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccceEEEEEEeeeccccccccccccCC
Confidence            368999999999999988 999999999999993215666666555443321   12222222211111001001 11  


Q ss_pred             -CCceEEEEEEcHHHHHHHhhcCC
Q psy11834        182 -DEELIEVVEMGLEEAREYLAQDE  204 (230)
Q Consensus       182 -~~E~~~v~wv~~eE~~~~~~~~~  204 (230)
                       ..+...+.|++++++........
T Consensus       116 ~~~e~~~~~~~~~~~~~~~~~~~~  139 (161)
T COG0494         116 PSEELEDLEWVPLDELAALVLAED  139 (161)
T ss_pred             CcchhhceeeeeHHHcccccccch
Confidence             35788899999999887765543

>KOG2839|consensus

Probab=99.11  E-value=6.4e-10  Score=89.73  Aligned_cols=89  Identities=20%  Similarity=0.199  Sum_probs=57.5

Q ss_pred             EEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEE---cCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834        111 LEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFR---SGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE  187 (230)
Q Consensus       111 ~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~---~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~  187 (230)
                      |-+|+|++|++|+..+||.||..||.|+..  .....++.+.   +....+....++|...+...  ...-...+.+.-+
T Consensus        38 wi~PKGGwE~dE~~~eAA~REt~EEAGv~G--~l~~~~~g~~~~~~~~~~~~~k~~~~~l~v~e~--le~wp~~~~~~r~  113 (145)
T KOG2839|consen   38 WIVPKGGWEPDESVEEAALRETWEEAGVKG--KLGRLLGGFEDFLSKKHRTKPKGVMYVLAVTEE--LEDWPESEHEFRE  113 (145)
T ss_pred             ccCCCCCCCCCCCHHHHHHHHHHHHhCcee--eeeccccchhhccChhhcccccceeehhhhhhh--cccChhhhcccce
Confidence            449999999999999999999999999987  3333344333   11111222334454443211  0101113455888


Q ss_pred             EEEEcHHHHHHHhhcC
Q psy11834        188 VVEMGLEEAREYLAQD  203 (230)
Q Consensus       188 v~wv~~eE~~~~~~~~  203 (230)
                      ..|++++|+...+...
T Consensus       114 r~W~~ledA~~~~~~~  129 (145)
T KOG2839|consen  114 REWLKLEDAIELCQHK  129 (145)
T ss_pred             eEEeeHHHHHHHHhhH
Confidence            9999999999998833

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=98.96  E-value=5e-09  Score=88.68  Aligned_cols=32  Identities=19%  Similarity=0.224  Sum_probs=29.0

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCcc
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDV  140 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v  140 (230)
                      ..|.||||++++||++.+||+|||.||||+.+
T Consensus        60 g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          60 GEWAIPGGMVDPGEKISATLKREFGEEALNSL   91 (186)
T ss_pred             CcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence            45889999999999999999999999997654

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>KOG3069|consensus

Probab=98.78  E-value=2.5e-08  Score=86.40  Aligned_cols=93  Identities=20%  Similarity=0.039  Sum_probs=60.2

Q ss_pred             CcEEEeeeeecCC-CCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        108 GVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       108 ~~~~elPgG~VE~-GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      ..-..||||+.|+ +++-.++|.||..||.|+..  ..+..++.+.+-....+..++-+++...............+|..
T Consensus        73 sGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~--~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~  150 (246)
T KOG3069|consen   73 SGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDP--ELVDVLGALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVE  150 (246)
T ss_pred             CCceeCCCCcCCccccchHHHHHHHHHHHhCCCH--HHhhhhhhccceeeccCcccceeEEEEecccccccccCCchhee
Confidence            3445699999998 56788999999999999987  66555554222111122233444444332211133345788999


Q ss_pred             EEEEEcHHHHHHHhhc
Q psy11834        187 EVVEMGLEEAREYLAQ  202 (230)
Q Consensus       187 ~v~wv~~eE~~~~~~~  202 (230)
                      ++.|+|++++..-..+
T Consensus       151 ~~F~VPL~~ll~~~~~  166 (246)
T KOG3069|consen  151 SAFWVPLTDLLLPKHQ  166 (246)
T ss_pred             eeeeeeHHHHhhhhcc
Confidence            9999999998765433

>PLN02839 nudix hydrolase

Probab=98.50  E-value=4.3e-06  Score=77.26  Aligned_cols=115  Identities=15%  Similarity=0.139  Sum_probs=77.4

Q ss_pred             ccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccC-CCceEEEEEEEc----CCCccCeEEEEEEEEEcCcccc
Q psy11834        101 TKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVP-VEKLEKIQTFRS----GVGSAGDRQTLFFVEVTDDMKV  175 (230)
Q Consensus       101 ~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~-~~~l~~l~~~~~----~~~~s~~~~~~y~a~~~~~~~~  175 (230)
                      +.||..   .=.+.||++..||++.+++.||..||.|+... ...+...+.+..    ..+...+..++|=.++..+ .+
T Consensus       230 ~t~PGm---LDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YDLeLP~d-f~  305 (372)
T PLN02839        230 STYPGM---LDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYDLELPQD-FV  305 (372)
T ss_pred             CCCCCh---hhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEeeeecCCc-cc
Confidence            456643   33588999999999999999999999999651 124555554221    2233333444444443322 11


Q ss_pred             cCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q psy11834        176 NSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAA  221 (230)
Q Consensus       176 ~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~  221 (230)
                        ....++|..+...++++|+.+.+.+++...|...++.+.+++++
T Consensus       306 --P~~qDGEVe~F~Lm~v~EV~~~l~~~~~fKpn~aLViiDFLiRh  349 (372)
T PLN02839        306 --PKNQDGEVESFKLIPVAQVANVIRKTSFFKANCSLVIIDFLFRH  349 (372)
T ss_pred             --cCCCccceeEEEEecHHHHHHHHHcCCCCCcccHHHHHHHHHHc
Confidence              13467899999999999999999998643356667777777765

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.46  E-value=4.3e-07  Score=75.66  Aligned_cols=145  Identities=14%  Similarity=0.081  Sum_probs=98.9

Q ss_pred             eecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEE
Q psy11834         32 KENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTL  111 (230)
Q Consensus        32 ~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (230)
                      .+-..||-.+-+.-|.+.++.++| .+|++|+.|               |....            +.   +|  .-|| 
T Consensus        19 ~~k~~~Ht~d~~~LHrAFS~~lFn-e~g~LLltr---------------RA~~K------------~t---wP--~vWT-   64 (185)
T COG1443          19 AEKLAAHTGDTPRLHRAFSSFLFN-ERGQLLLTR---------------RALSK------------KT---WP--GVWT-   64 (185)
T ss_pred             chhhhhhccccHHHHhhhheeEEC-CCCceeeeh---------------hhhhc------------cc---Cc--cccc-
Confidence            344567766766569999999999 599999988               43321            11   22  1233 


Q ss_pred             EeeeeecCCCCCHHHHHHHHHHhhhCCccCCCce-EEEEEE--Ec---CCCccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKL-EKIQTF--RS---GVGSAGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       112 elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l-~~l~~~--~~---~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      ....|+=-+||+..+||+|.+.+|+|+...-.+. ..+..|  ..   +...-++.+.++++....     .....++|.
T Consensus        65 NSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~-----~~~~npdEV  139 (185)
T COG1443          65 NSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDGIVENEICPVLAARLDS-----ALDPNPDEV  139 (185)
T ss_pred             ccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCCcceeeeeeEEEEeecC-----CCCCChHHh
Confidence            4566776789999999999999999998831122 222222  21   223456788899998653     223457899


Q ss_pred             EEEEEEcHHHHHHHhhcCCCCChHHHHHHH
Q psy11834        186 IEVVEMGLEEAREYLAQDEVRSPSGFLFAM  215 (230)
Q Consensus       186 ~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~  215 (230)
                      .+.+|++++++..++....+.-.+.+...+
T Consensus       140 ~~~~wv~~e~l~~~~~~~~~~fsPW~~~~~  169 (185)
T COG1443         140 MDYRWVSPEDLKEMVDATPWAFSPWFVIQA  169 (185)
T ss_pred             hheeccCHHHHHHhhcCCceeeChHHHHHh
Confidence            999999999999999988776334433333

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.32  E-value=8.5e-06  Score=61.80  Aligned_cols=79  Identities=16%  Similarity=0.069  Sum_probs=50.5

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||+|.++.+|+..++..|++.+|.++..  ..   ++.+.+.-+.-.-.+++|.+.....      .   .+..
T Consensus        27 ~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~H~fth~~~~~~~~~~~~~~~------~---~~~~   92 (118)
T cd03431          27 LAGLWEFPSVEWEEEADGEEALLSALKKALRLSL--EP---LGTVKHTFTHFRLTLHVYLARLEGD------L---LAPD   92 (118)
T ss_pred             CCcceeCCCccccCCcCHHHHHHHHHHHHhCccc--cc---ceeEEEecCCeEEEEEEEEEEEeCC------C---cCcc
Confidence            5789999999999999999999999999876411  11   2222222112223455666664311      0   1223


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      +..|++++++..+
T Consensus        93 ~~~W~~~eel~~~  105 (118)
T cd03431          93 EGRWVPLEELDEY  105 (118)
T ss_pred             ccEEccHHHHhhC
Confidence            5789999988864

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG0648|consensus

Probab=98.21  E-value=5e-07  Score=81.00  Aligned_cols=118  Identities=14%  Similarity=0.066  Sum_probs=72.4

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      .-+++..+.|. +++|++++             ......                     .....|-+|+|.|+++|++.
T Consensus       115 ~vgvg~~V~n~-~~eVlVv~-------------e~d~~~---------------------~~~~~wK~ptG~v~~~e~i~  159 (295)
T KOG0648|consen  115 RVGVGAFVLNK-KKEVLVVQ-------------EKDGAV---------------------KIRGGWKLPTGRVEEGEDIW  159 (295)
T ss_pred             heeeeeeEecC-CceeEEEE-------------ecccce---------------------eecccccccceEecccccch
Confidence            35667777775 47888887             422222                     14567889999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEEEcCCCcc-CeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTFRSGVGSA-GDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s-~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~  201 (230)
                      ++|.||++||||++..-..+..+...+.+. .. .....+|.|.... .. -.....+.|+....|+++++......
T Consensus       160 ~gavrEvkeetgid~ef~eVla~r~~H~~~-~~~~ksd~f~~c~L~p-~s-~~i~~~~~ei~~~~Wmp~~e~v~qp~  233 (295)
T KOG0648|consen  160 HGAVREVKEETGIDTEFVEVLAFRRAHNAT-FGLIKSDMFFTCELRP-RS-LDITKCKREIEAAAWMPIEEYVSQPL  233 (295)
T ss_pred             hhhhhhhHHHhCcchhhhhHHHHHhhhcch-hhcccccceeEEEeec-cc-cccchhHHHHHHHhcccHHHhhcccc
Confidence            999999999999866222222211222221 12 1233455555421 11 11123567777789999997665544

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.10  E-value=3.1e-05  Score=61.71  Aligned_cols=95  Identities=22%  Similarity=0.105  Sum_probs=62.0

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcc---c---------
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDM---K---------  174 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~---~---------  174 (230)
                      +...|.+|.|....||++..||+||.-||+|+.+. ..+..++.+.-+-   +..+..|-++..-+.   +         
T Consensus        34 D~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd-GP~~~lG~~kQ~G---GKvVta~~veae~Dva~~rSntFe~eWP  109 (161)
T COG4119          34 DDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD-GPRIDLGSLKQSG---GKVVTAFGVEAELDVADARSNTFELEWP  109 (161)
T ss_pred             CCCcccccccccCCCcCHHHHHHHHhhhhhceeec-CchhhhhhhccCC---CcEEEEEeeeeeeehhhhhcceeeeecC
Confidence            35678899999999999999999999999999883 4555555544321   122333333211000   0         


Q ss_pred             ccCCCC-CCCceEEEEEEcHHHHHHHhhcCCC
Q psy11834        175 VNSGGG-VDEELIEVVEMGLEEAREYLAQDEV  205 (230)
Q Consensus       175 ~~~~~~-~~~E~~~v~wv~~eE~~~~~~~~~~  205 (230)
                      ..++.. .-.|.-.+-|+++++++..+.++.-
T Consensus       110 prSG~M~~FPEVDRagWF~l~eAr~Kil~gQR  141 (161)
T COG4119         110 PRSGKMRKFPEVDRAGWFPLAEARTKILKGQR  141 (161)
T ss_pred             CCCCccccCcccccccceecHHHHhHHhhccc
Confidence            011111 3356667889999999998887743

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=96.96  E-value=0.0012  Score=50.54  Aligned_cols=82  Identities=24%  Similarity=0.183  Sum_probs=44.2

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||.--.+. ++..+++.+.+.+..|+.+  .....++.+.+.-+.-...+++|.+.+.....     .   +..
T Consensus        22 l~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~--~~~~~~~~v~H~fSH~~~~~~~~~~~~~~~~~-----~---~~~   90 (114)
T PF14815_consen   22 LAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSI--RSVEPLGTVKHVFSHRRWTIHVYEVEVSADPP-----A---EPE   90 (114)
T ss_dssp             TTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EE--EE-S-SEEEEEE-SSEEEEEEEEEEEEE-SS------------T
T ss_pred             hhcCcccCEeCccC-CCCHHHHHHHHHHHcCCCh--hhheecCcEEEEccceEEEEEEEEEEecCCCC-----C---CCC
Confidence            68899999988774 4446666667778888876  33334555554422333455677777653211     0   122


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      +..|++++++.++
T Consensus        91 ~~~W~~~~~l~~~  103 (114)
T PF14815_consen   91 EGQWVSLEELDQY  103 (114)
T ss_dssp             TEEEEEGGGGGGS
T ss_pred             CcEEEEHHHHhhC
Confidence            4899999998753

>KOG0142|consensus

Probab=96.59  E-value=0.0081  Score=51.44  Aligned_cols=81  Identities=17%  Similarity=0.259  Sum_probs=55.3

Q ss_pred             CCCHHHHHHHHHHhhhCCcc---CCCceEEEEEEEc-CC--C--ccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEc
Q psy11834        121 NKSLAEIAREEVLEECGYDV---PVEKLEKIQTFRS-GV--G--SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMG  192 (230)
Q Consensus       121 GEs~~eAA~REl~EETGl~v---~~~~l~~l~~~~~-~~--~--~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~  192 (230)
                      +.....||+|-|.-|+|+..   ++.++.+++.+.. ++  +  +-++..++.+..  .+..   ..++++|..++.|++
T Consensus       102 ~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~--~~~~---~nPnpnEv~e~ryvs  176 (225)
T KOG0142|consen  102 ALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLV--KDVT---LNPNPNEVSEIRYVS  176 (225)
T ss_pred             hHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEe--ccCC---CCCChhhhhHhheec
Confidence            34688999999999999965   3456777776433 22  2  223344444444  2222   234578999999999


Q ss_pred             HHHHHHHhhcCCCC
Q psy11834        193 LEEAREYLAQDEVR  206 (230)
Q Consensus       193 ~eE~~~~~~~~~~~  206 (230)
                      .+|+..+++.....
T Consensus       177 ~eelkel~~~~~~~  190 (225)
T KOG0142|consen  177 REELKELVAKASAG  190 (225)
T ss_pred             HHHHHHHHhccccC
Confidence            99999999987665

>KOG4195|consensus

Probab=96.08  E-value=0.0053  Score=53.32  Aligned_cols=29  Identities=21%  Similarity=0.235  Sum_probs=26.3

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhC
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECG  137 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETG  137 (230)
                      ..|.+|||++|+||.+-.+.+||+.||.=
T Consensus       150 ~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  150 GEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             CcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            45779999999999999999999999963

>KOG2937|consensus

Probab=95.88  E-value=0.0015  Score=59.52  Aligned_cols=108  Identities=19%  Similarity=0.171  Sum_probs=71.1

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      +.+..+.++.|....++||++             +..                          +-.|.+|-|++.++|+-
T Consensus        81 ~iPv~ga~ild~~~sr~llv~-------------g~q--------------------------a~sw~fprgK~~kdesd  121 (348)
T KOG2937|consen   81 RIPVRGAIILDEKRSRCLLVK-------------GWQ--------------------------ASSWSFPRGKISKDESD  121 (348)
T ss_pred             CCCCchHhhhhhhhhhhheee-------------cee--------------------------cccccccCccccccchh
Confidence            345555666787778999998             543                          23478999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEE-EcCcccccCCCCCCCceEEEEEEcHHHH
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVE-VTDDMKVNSGGGVDEELIEVVEMGLEEA  196 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~-~~~~~~~~~~~~~~~E~~~v~wv~~eE~  196 (230)
                      .+||.||+.||||.++  .....-..+. .....++...+|+.. +..+.  +.....-.|+....|..++++
T Consensus       122 ~~caiReV~eetgfD~--skql~~~e~I-e~nI~dq~~~~fIi~gvs~d~--~f~~~v~~eis~ihW~~l~~l  189 (348)
T KOG2937|consen  122 SDCAIREVTEETGFDY--SKQLQDNEGI-ETNIRDQLVRLFIINGVSEDT--NFNPRVRKEISKIHWHYLDHL  189 (348)
T ss_pred             hhcchhcccchhhcCH--HHHhccccCc-ccchhhceeeeeeeccceeee--ecchhhhccccceeeeehhhh
Confidence            9999999999999998  5433222221 122344455555553 11111  112224567778899999888

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=92.80  E-value=0.85  Score=38.14  Aligned_cols=82  Identities=18%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             eeecCCCC--CHHHH-----HHHHHHhhhCCccC-CCceEEEEEEEcCCCccCeEEE---EEEEEEcCcccccCCCCCCC
Q psy11834        115 AGIVDKNK--SLAEI-----AREEVLEECGYDVP-VEKLEKIQTFRSGVGSAGDRQT---LFFVEVTDDMKVNSGGGVDE  183 (230)
Q Consensus       115 gG~VE~GE--s~~eA-----A~REl~EETGl~v~-~~~l~~l~~~~~~~~~s~~~~~---~y~a~~~~~~~~~~~~~~~~  183 (230)
                      ||++..++  ++.++     +.|||.||.++.-. ...+.+++-.-.+.. .--++|   +|......    ++-...+.
T Consensus        97 GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~n-eVgkVHiG~lf~~~~k~----ndvevKEk  171 (203)
T COG4112          97 GGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTN-EVGKVHIGALFLGRGKF----NDVEVKEK  171 (203)
T ss_pred             ccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCc-ccceEEEEEEEEeeccc----cceeeeec
Confidence            78887643  33333     56999999998731 145666665444332 212333   44444321    22223577


Q ss_pred             ceEEEEEEcHHHHHHHhh
Q psy11834        184 ELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       184 E~~~v~wv~~eE~~~~~~  201 (230)
                      +.+++.|+.++++.++..
T Consensus       172 d~~~~kwik~~ele~~y~  189 (203)
T COG4112         172 DLFEWKWIKLEELEKFYG  189 (203)
T ss_pred             ceeeeeeeeHHHHHHHhh
Confidence            899999999999998543

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=89.97  E-value=1.7  Score=37.03  Aligned_cols=61  Identities=13%  Similarity=0.192  Sum_probs=34.5

Q ss_pred             EEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCC-ce---EEEEEEEcC-------------CCccCeEEEEEEEEEc
Q psy11834        110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVE-KL---EKIQTFRSG-------------VGSAGDRQTLFFVEVT  170 (230)
Q Consensus       110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~-~l---~~l~~~~~~-------------~~~s~~~~~~y~a~~~  170 (230)
                      .+-||||.+.+||+..++.+|.|.+-.|..-... .+   ..++.++..             .....+...+|++...
T Consensus        69 ~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lp  146 (188)
T PF13869_consen   69 FFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLP  146 (188)
T ss_dssp             EEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--
T ss_pred             cccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecC
Confidence            6889999999999999999999999998753111 11   234443321             1234466778888764

...

>KOG1689|consensus

Probab=82.74  E-value=3.8  Score=34.56  Aligned_cols=30  Identities=13%  Similarity=0.161  Sum_probs=27.4

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhC
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECG  137 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETG  137 (230)
                      ...+.+|||.+++||+-.+..+|=+-|-+|
T Consensus        93 ~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   93 NTFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            345789999999999999999999999999

>KOG4313|consensus

Probab=80.41  E-value=6.8  Score=34.97  Aligned_cols=92  Identities=22%  Similarity=0.222  Sum_probs=65.2

Q ss_pred             EeeeeecCCCCCHHHHHHHHHHhhhCCccC-CCceEEEEE--EE---cCCCccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        112 EFCAGIVDKNKSLAEIAREEVLEECGYDVP-VEKLEKIQT--FR---SGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       112 elPgG~VE~GEs~~eAA~REl~EETGl~v~-~~~l~~l~~--~~---~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      ...||++--|-...++|+.|..||+.+... ..++...|.  |+   +..+..-+.+++|=..++.+ .++  ...++|.
T Consensus       168 N~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d-~iP--~~nDGEV  244 (306)
T KOG4313|consen  168 NMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVFDLELPLD-FIP--QNNDGEV  244 (306)
T ss_pred             hhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEEeccCchh-hcC--CCCCCce
Confidence            467899999999999999999999999772 334554443  33   22344445667776665432 222  2357788


Q ss_pred             EEEEEEcHHHHHHHhhcCCCC
Q psy11834        186 IEVVEMGLEEAREYLAQDEVR  206 (230)
Q Consensus       186 ~~v~wv~~eE~~~~~~~~~~~  206 (230)
                      ...--+++.+..+.+...++.
T Consensus       245 ~~F~Lltl~~~v~~l~~k~FK  265 (306)
T KOG4313|consen  245 QAFELLTLKDCVERLFTKDFK  265 (306)
T ss_pred             eeEeeecHHHHHHHHHhhccC
Confidence            888889999999998888775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
3q91_A	218	Crystal Structure Of Human Uridine Diphosphate Gluc		2e-22
3o6z_A	191	Structure Of The D152a E.Coli Gdp-Mannose Hydrolase		2e-08
3o52_A	191	Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh		3e-08
1viu_A	203	Crystal Structure Of Putative Adp Ribose Pyrophosph		4e-08
3o61_A	191	Structure Of The E100a E.Coli Gdp-Mannose Hydrolase		1e-07
1g0s_A	209	The Crystal Structure Of The E.Coli Adp-Ribose Pyro		8e-04

>pdb|3Q91|A Chain A, Crystal Structure Of Human Uridine Diphosphate Glucose Pyrophosphatase (Nudt14) Length = 218

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 104 PAELGVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
           P   GVT+E CAG+VD+   SL E+A +E  EECGY +    L ++ T+ SGVG  G RQ
Sbjct: 90  PGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQ 149
Query: 163 TLFFVEVTDDMKVNSGGGVDE--ELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLA 220
           T+F+ EVTD  +   GGG+ E  ELIEVV + LE A+ +    ++    G +F + WFL+
Sbjct: 150 TMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSWFLS 209

>pdb|3O6Z|A Chain A, Structure Of The D152a E.Coli Gdp-Mannose Hydrolase (Yffh) In Complex With Mg++ Length = 191

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
           E G  +E CAG++D ++    I R+E +EE GY+V   ++ K+       G   +    F
Sbjct: 76  ESGQLIESCAGLLDNDEPEVCI-RKEAIEETGYEVG--EVRKLFELYMSPGGVTELIHFF 132
Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
             E +D+ + N+GGGV++E IEV+E+   +A E +   E+R     L 
Sbjct: 133 IAEYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTGEIRDGKTVLL 180

>pdb|3O52|A Chain A, Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh) In Complex With Tartrate Length = 191

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
           E G  +E CAG++D ++    I R+E +EE GY+V   ++ K+       G   +    F
Sbjct: 76  ESGQLIESCAGLLDNDEPEVCI-RKEAIEETGYEVG--EVRKLFELYMSPGGVTELIHFF 132
Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
             E +D+ + N+GGGV++E IEV+E+   +A E +   E+R     L 
Sbjct: 133 IAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLL 180

>pdb|1VIU|A Chain A, Crystal Structure Of Putative Adp Ribose Pyrophosphatase Length = 203

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
           E G  +E CAG++D ++    I R+E +EE GY+V   ++ K+       G   +    F
Sbjct: 78  ESGQLIESCAGLLDNDEPEVCI-RKEAIEETGYEVG--EVRKLFELYXSPGGVTELIHFF 134
Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
             E +D+ + N+GGGV++E IEV+E+   +A E +   E+R     L 
Sbjct: 135 IAEYSDNQRANAGGGVEDEDIEVLELPFSQALEXIKTGEIRDGKTVLL 182

>pdb|3O61|A Chain A, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh) In Complex With Gdp-Mannose And Mg++ Length = 191

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
           E G  +E CAG++D ++    I R+  +EE GY+V   ++ K+       G   +    F
Sbjct: 76  ESGQLIESCAGLLDNDEPEVCI-RKAAIEETGYEVG--EVRKLFELYMSPGGVTELIHFF 132
Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
             E +D+ + N+GGGV++E IEV+E+   +A E +   E+R     L 
Sbjct: 133 IAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLL 180

>pdb|1G0S|A Chain A, The Crystal Structure Of The E.Coli Adp-Ribose Pyrophosphatase Length = 209

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 91  EEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT 150
           E+ R  + D ++ P      LE  AG++++ +S+ ++AR E +EE G  + V++ + + +
Sbjct: 76  EQIRIAAYDTSETPW----LLEMVAGMIEEGESVEDVARREAIEEAG--LIVKRTKPVLS 129
Query: 151 FRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDE-ELIEVVEMGLEEAREYLAQDEVRSPS 209
           F +  G   +R ++   EV         G  DE E I V  +  E+A +++ + ++ + +
Sbjct: 130 FLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAA 189
Query: 210 GFLFAMHWF 218
             + A+ W 
Sbjct: 190 SVI-ALQWL 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	1e-32
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	2e-20
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	3e-15
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	3e-13
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	3e-12
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	1e-10
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	8e-10
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	2e-09
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	4e-07
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	2e-06
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	4e-06
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	5e-06
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	3e-04
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	6e-04

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens} Length = 218

 Score =  116 bits (292), Expect = 1e-32
 Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 5/160 (3%)

Query: 68  QFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDK-NKSLAE 126
           QF     V   +V      +    +           P   GVT+E CAG+VD+   SL E
Sbjct: 56  QFRPA--VYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEE 113

Query: 127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDE--E 184
           +A +E  EECGY +    L ++ T+ SGVG  G RQT+F+ EVTD  +   GGG+ E  E
Sbjct: 114 VACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGE 173

Query: 185 LIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAG 224
           LIEVV + LE A+ +    ++    G +F + WFL+  A 
Sbjct: 174 LIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSWFLSQVAP 213

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A Length = 191

 Score = 83.8 bits (208), Expect = 2e-20
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFV 167
           G  +E CAG++D ++    I +E  +EE GY+V   ++ K+       G   +    F  
Sbjct: 78  GQLIESCAGLLDNDEPEVCIRKE-AIEETGYEV--GEVRKLFELYMSPGGVTELIHFFIA 134

Query: 168 EVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
           E +D+ + N+GGGV++E IEV+E+   +A E +   E+R
Sbjct: 135 EYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTGEIR 173

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 70.5 bits (173), Expect = 3e-15
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 111 LEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVT 170
           LE  AG++++ +S+ ++AR E +EE G    V++ + + +F +  G   +R ++   EV 
Sbjct: 92  LEMVAGMIEEGESVEDVARREAIEEAGLI--VKRTKPVLSFLASPGGTSERSSIMVGEVD 149

Query: 171 DDMKVNSGGGVDE-ELIEVVEMGLEEAREYLAQDEVR 206
                   G  DE E I V  +  E+A +++ + ++ 
Sbjct: 150 ATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKID 186

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
            P   G  +EF AG++D  ++    A  E+ EE GY    +  E         G +    
Sbjct: 87  PPMG-GYCIEFPAGLIDDGETPEAAALRELEEETGYK--GDIAECSPAVCMDPGLSNCTI 143

Query: 163 TLFFVEVTDDMKVNSGGGV---DEELIEVVEMGLEEAREYLAQDEVR 206
            +  V +  D   N+       D E +EV+ +   +  + L      
Sbjct: 144 HIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDALVAE 190

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
           +P      LE  AG VD+ ++    AR E+ EE G +   E L  + +F           
Sbjct: 63  HPTG-KFLLEVPAGKVDEGETPEAAARRELREEVGAE--AETLIPLPSFHPQPSFTAVVF 119

Query: 163 TLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV---RSPSGFLFAMHWF 218
             F         V      + EL+E +E+ L E    LA+ E+    +     +A    
Sbjct: 120 HPFL--ALKARVVTPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHL 176

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 57.1 bits (139), Expect = 1e-10
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
           YP       E  AG V+K + L   A  E+LEE G      +   +  F      +G   
Sbjct: 27  YPLR-ATITEIVAGGVEKGEDLGAAAARELLEEVGGA--ASEWVPLPGFYPQPSISGVVF 83

Query: 163 TLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
                 +   + + +    D E IE V + L E    L   E++
Sbjct: 84  YPL---LALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAGEIQ 124

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 55.7 bits (135), Expect = 8e-10
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 9/118 (7%)

Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
              E    L F  G++D  +S+ E A  E+ EE G+      L  ++           + 
Sbjct: 70  VGTE-SYELGFSKGLIDPGESVYEAANRELKEEVGFG--ANDLTFLKKLSMAPSYFSSKM 126

Query: 163 TLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV---RSPSGFLFAMHW 217
            +   +   D+   S  G + E +  V   L    + L   +    R+ S       W
Sbjct: 127 NIVVAQ---DLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREW 181

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
                   LE  AG+++  +   E AR E+ E+ G       L  + ++    G   ++ 
Sbjct: 55  PAVG-LAPLEIPAGLIEPGEDPLEAARRELAEQTGL---SGDLTYLFSYFVSPGFTDEKT 110

Query: 163 TLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAK 222
            +F  E   ++K       ++E IEVV M  EEA E   + EV   +  L  + ++ A  
Sbjct: 111 HVFLAE---NLKEVEAHPDEDEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHAFL 167

Query: 223 AGQ 225
            G+
Sbjct: 168 RGR 170

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 7/106 (6%)

Query: 103 YPAELGVTLEFCAGIVD-KNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDR 161
           +        E  AG++D   +     A  E+ EE G        + +    +  G + + 
Sbjct: 65  HTYG-RRLWELPAGLLDVAGEPPHLTAARELREEVGLQA--STWQVLVDLDTAPGFSDES 121

Query: 162 QTLFFVEVTDDMKVNSGGGVDE-ELIEVVEMGLEEAREYLAQDEVR 206
             ++    T   +V       E   + +    + EA   + + E+ 
Sbjct: 122 VRVYLA--TGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIV 165

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFV 167
            + L   AG ++  +S+ +    EVLEE G+    E L  I  +     ++     L F 
Sbjct: 32  AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTC---ASNGTTYLRFT 88

Query: 168 EVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPS 209
                +  +    +D  ++      ++E R    Q   R+P 
Sbjct: 89  FSGQVVSFDPDRKLDTGIVRAAWFSIDEIRA--KQAMHRTPL 128

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 116 GIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKV 175
           G  +  +SL E A  EV EE G     E L  +   R       +R+  +F+     M+ 
Sbjct: 31  GHPEPGESLEEAAVREVWEETGVR--AEVLLPLYPTRYVNPKGVEREVHWFL-----MRG 83

Query: 176 NSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
                ++E +        EEAR  LA  E  
Sbjct: 84  EGAPRLEEGMTGAGWFSPEEARALLAFPEDL 114

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 115 AGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMK 174
           AG ++ +++L E A  E+ EE G     +   ++  + +   +   R  LF +E+     
Sbjct: 35  AGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLR-FLFAIELEQICP 93

Query: 175 VNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSP 208
                  D ++     +  E   E L    +RSP
Sbjct: 94  TQPH---DSDIDCCRWVSAE---EILQASNLRSP 121

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 3/104 (2%)

Query: 115 AGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMK 174
           +G V+  ++  + A  E  EE G  V   K       R   G    R             
Sbjct: 49  SGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTL 108

Query: 175 VNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWF 218
                   +E+ E   +  E+  +  A  ++R     LF     
Sbjct: 109 AP---AFTDEIAEASFVSREDFAQLYAAGQIRMYQTKLFYADAL 149

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 33/194 (17%)

Query: 45  QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYP 104
            H D+    ++     I+      F+  +  K VQ +    ++   E D      +    
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEID-----HIIMSK 58

Query: 105 AELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKL--EKIQTFRSGVGSAGDRQ 162
             +  TL     ++ K + + +   EEVL    Y   +  +  E+ Q           R 
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 163 TLF-FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAR--EY-------------LAQDEVR 206
            L+   +V     V+       +    +   L E R  +              +A D   
Sbjct: 118 RLYNDNQVFAKYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 207 SPS---GFLFAMHW 217
           S        F + W
Sbjct: 173 SYKVQCKMDFKIFW 186

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 67/216 (31%)

Query: 9   IIETQSSQFIQPYSVKFVQEAL---IKENQYCHPQFLITQHKD-----YYIVMNKITEAQ 60
           I+      F+  +  K VQ+     + + +  H    I   KD       +         
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----IIMSKDAVSGTLRLF-------W 69

Query: 61  IIETRSSQFIQPYSVKFVQVLLSV-Y---INSIPEEDRTGSIDVTKYPAELGVTLEFCAG 116
            + ++  + +Q    KFV+ +L + Y   ++ I  E R  S+    Y  +          
Sbjct: 70  TLLSKQEEMVQ----KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY----- 120

Query: 117 IVDKNKSLAE--IAREEVLEECGYDVPVEKL-EKIQTFRS-------GVGSAGDRQTLFF 166
             + N+  A+  ++R +         P  KL + +   R        GV  +G +  +  
Sbjct: 121 --NDNQVFAKYNVSRLQ---------PYLKLRQALLELRPAKNVLIDGVLGSG-KTWV-A 167

Query: 167 VEVTDDMKV--NSGGGV----------DEELIEVVE 190
           ++V    KV       +           E ++E+++
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 116 GIVDKNKSLAEIAREEVLEECGYDVPVEKL--EKIQTFRSGVGSAGDRQTLFFVEVTD-D 172
           G V+  +   E A     EE G +     +     +       +       +  EV D D
Sbjct: 48  GHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYD 107

Query: 173 MKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
           +++        E      +GLEEA +     E++
Sbjct: 108 VEIRL----SHEHQAYRWLGLEEACQLAQFKEMK 137

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 115 AGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD-DM 173
           AG ++  +++ E  + EV EE G     E L         V   G     F         
Sbjct: 52  AGRMEPGETIVEALQREVKEEAGLHCEPETL-------LSVEERGPSWVRFVFLARPTGG 104

Query: 174 KVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
            + +    D E ++            L   ++ 
Sbjct: 105 ILKTSKEADAESLQAAWYPRTSLPTPLRAHDIL 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.98
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.97
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.96
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.96
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.95
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.95
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.94
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.94
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.92
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.81
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.77
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.77
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.75
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.75
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.74
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.74
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.73
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.73
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.72
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.72
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.72
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.71
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.71
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.7
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.7
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.7
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.7
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.69
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.69
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.69
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.69
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.68
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.68
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.68
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.68
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.67
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.67
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.67
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.67
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.66
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.66
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.65
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.65
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.64
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.64
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.63
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.63
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.63
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.63
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.61
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.6
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.6
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.59
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.57
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.57
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.56
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.55
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.54
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.53
3f13_A	163	Putative nudix hydrolase family member; structural	99.53
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.53
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.53
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.52
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.51
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.51
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.51
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.51
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.5
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.5
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.48
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.44
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.39
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.25
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.19
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.7
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.7
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.68

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.98  E-value=1.1e-31  Score=230.12  Aligned_cols=190  Identities=30%  Similarity=0.523  Sum_probs=127.5

Q ss_pred             eeEEEEEEe-ecCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcc-----
Q psy11834         18 IQPYSVKFV-QEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPE-----   91 (230)
Q Consensus        18 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~-----   91 (230)
                      +...++++. +||....|      +++.++++|+|++++.+++++||+|             |||++.+.+.++.     
T Consensus        13 ~~~~~~~~~~~~G~~~~~------e~v~~~~aV~vl~~~~~~~~vlLvr-------------Q~R~~~~~~~~~~~~~~~   73 (218)
T 3q91_A           13 LGTENLYFQSMNGAQKSW------DFMKTHDSVTVLLFNSSRRSLVLVK-------------QFRPAVYAGEVERRFPGS   73 (218)
T ss_dssp             ----------------------------CCCEEEEEEEEGGGTEEEEEE-------------EECHHHHHHHTC------
T ss_pred             cceeEEEEECCCCCEEEE------EEEEcCCeEEEEEEECCCCEEEEEE-------------cccccccccccccccccc
Confidence            556777877 79998899      9999999999999997789999999             9999986433211     


Q ss_pred             ----cccCCccccccCCCCCCcEEEeeeeecCC-CCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEE
Q psy11834         92 ----EDRTGSIDVTKYPAELGVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFF  166 (230)
Q Consensus        92 ----~~~~~~~~~~~~~~~~~~~~elPgG~VE~-GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~  166 (230)
                          ..+.-++.-.+||.+.+++|+||||++|+ ||++.+||+||++||||+.+.+..+..++.++++++.++..+++|+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~  153 (218)
T 3q91_A           74 LAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFY  153 (218)
T ss_dssp             -------------------CCEEEECEEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEE
T ss_pred             ccccccccccccccccccCCCeEEECCcceeCCCCCCHHHHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEE
Confidence                01111233446888889999999999999 9999999999999999999876789999999998888899999999


Q ss_pred             EEEcCcccccC--CCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCc
Q psy11834        167 VEVTDDMKVNS--GGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQY  226 (230)
Q Consensus       167 a~~~~~~~~~~--~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  226 (230)
                      +.+.....+..  ...+++|++++.|++++++.+++.+|++..+.+.++|++||+++|.+++
T Consensus       154 a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~i~~g~i~~~~~~l~al~W~~~~~~~~~  215 (218)
T 3q91_A          154 TEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSWFLSQVAPNL  215 (218)
T ss_dssp             EEECGGGBCC---------CCEEEEEEEGGGHHHHHHCTTSCBBHHHHHHHHHHHHHTGGGC
T ss_pred             EEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcCCCCccHHHHHHHHHHHhcccccc
Confidence            99765433222  2346889999999999999999999999888888899999999998764

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.97  E-value=8.7e-30  Score=215.65  Aligned_cols=180  Identities=17%  Similarity=0.285  Sum_probs=144.9

Q ss_pred             cceEeEEEEeeecCeeeEEEEEEe---ecC---eEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCcccc
Q psy11834          3 KITEAQIIETQSSQFIQPYSVKFV---QEA---LIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVK   76 (230)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~---~~g---~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~   76 (230)
                      .++.++...++++ |+++++.+++   ++|   ....+      +++.++++|+|++++..++++||+|           
T Consensus        15 ~~~~~~~~~v~~g-~~~v~~~~~~~~~~~g~~~~~~~r------~~~~~~~av~vl~~~~~~~~vLLvr-----------   76 (209)
T 1g0s_A           15 DVEIIARETLYRG-FFSLDLYRFRHRLFNGQMSHEVRR------EIFERGHAAVLLPFDPVRDEVVLIE-----------   76 (209)
T ss_dssp             GEEEEEEEEEEES-SSEEEEEEEEEBCTTSCBCCCEEE------EEEECCCEEEEEEEETTTTEEEEEE-----------
T ss_pred             CcEEEEEEEEEee-eEEEEEEEEEEEcCCCCcceEEEE------EEEeCCCEEEEEEEECCCCEEEEEE-----------
Confidence            3555666777876 9999998886   466   34455      8889999999999986688999999           


Q ss_pred             ceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCC
Q psy11834         77 FVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVG  156 (230)
Q Consensus        77 ~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~  156 (230)
                        |+|++....                 ...++.|+||||++|+||++.+||+||++||||+.+  ..+..++.++++++
T Consensus        77 --q~R~~~~~~-----------------~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~--~~~~~l~~~~~~~g  135 (209)
T 1g0s_A           77 --QIRIAAYDT-----------------SETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIV--KRTKPVLSFLASPG  135 (209)
T ss_dssp             --EECGGGGGG-----------------SSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCC--CCEEEEEEEESCTT
T ss_pred             --eecccCCCC-----------------CCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCccc--CcEEEeEEEecCCC
Confidence              999876210                 013689999999999999999999999999999999  88999999999998


Q ss_pred             ccCeEEEEEEEEEcCcccccC--CCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q psy11834        157 SAGDRQTLFFVEVTDDMKVNS--GGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA  223 (230)
Q Consensus       157 ~s~~~~~~y~a~~~~~~~~~~--~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~  223 (230)
                      .+++.+++|+|...... ...  ...+++|.+++.|++++++.+++.+|++.+ +.+++|++|++.+++
T Consensus       136 ~~~~~~~~f~a~~~~~~-~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g~i~d-~~t~~al~~~~~~~~  202 (209)
T 1g0s_A          136 GTSERSSIMVGEVDATT-ASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN-AASVIALQWLQLHHQ  202 (209)
T ss_dssp             TBCCEEEEEEEECCGGG-CC--------CCSCEEEEEEHHHHHHHHHTTSSCB-HHHHHHHHHHHHHHH
T ss_pred             ccCcEEEEEEEEEcccc-ccCCCCCCCCCcEEEEEEEEHHHHHHHHHcCCCCC-HHHHHHHHHHHHhhH
Confidence            88889999999863221 111  123678899999999999999999999997 678999999888754

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.96  E-value=1.8e-28  Score=204.58  Aligned_cols=181  Identities=22%  Similarity=0.410  Sum_probs=140.3

Q ss_pred             ceEeEEEEeeecCeeeEEEEEEe---ecCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceec
Q psy11834          4 ITEAQIIETQSSQFIQPYSVKFV---QEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQV   80 (230)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~   80 (230)
                      ++.++... ..++|+++++.+++   +||.....    .++++.++++|+|++++.+++++||+|             |+
T Consensus         5 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~----~r~~~~~~~av~v~~~~~~~~~vlLv~-------------~~   66 (191)
T 3o6z_A            5 ITLIKDKI-LSDNYFTLHNITYDLTRKDGEVIRH----KREVYDRGNGATILLYNTKKKTVVLIR-------------QF   66 (191)
T ss_dssp             EEEEEEEE-EECSSSEEEEEEEEEECTTSCEEEE----EEEEEECCCEEEEEEEETTTTEEEEEE-------------EE
T ss_pred             eEEeEeEE-EecCcEEEEEEEEEEECCCCCEEEE----EEEEEecCCEEEEEEEECCCCEEEEEE-------------cC
Confidence            44444444 46699999988875   47754221    237889999999999997679999999             99


Q ss_pred             ccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCe
Q psy11834         81 LLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGD  160 (230)
Q Consensus        81 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~  160 (230)
                      |++.+.+..+                .++.|+||||++| ||++.+||+||++||||+.+  ..+..++.++..++..+.
T Consensus        67 r~~~~~~~~~----------------~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~--~~~~~l~~~~~~~~~~~~  127 (191)
T 3o6z_A           67 RVATWVNGNE----------------SGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEV--GEVRKLFELYMSPGGVTE  127 (191)
T ss_dssp             CHHHHTTTCT----------------TCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCC--SCEEEEEEEESCTTTBCC
T ss_pred             CccccccCCC----------------CCeEEEecceEeC-CCCHHHHHHHHHHHHhCCcc--CcEEEEEEEEeCCCccCc
Confidence            9876422110                3688999999999 99999999999999999999  889999999999888888


Q ss_pred             EEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q psy11834        161 RQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAK  222 (230)
Q Consensus       161 ~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~  222 (230)
                      .+++|++..............++|++++.|++++++.+++.+|++.+ +.++.|++|+..+.
T Consensus       128 ~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~d-~~t~~al~~~~~~~  188 (191)
T 3o6z_A          128 LIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTGEIRD-GKTVLLLNYLQTSH  188 (191)
T ss_dssp             EEEEEEEECCTTCC--------CCSSEEEEEEHHHHHHHHHHSSCCB-HHHHHHHHHHHHHS
T ss_pred             EEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC
Confidence            99999999654322221112377899999999999999999999997 78899998887653

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.96  E-value=5.9e-28  Score=202.83  Aligned_cols=169  Identities=17%  Similarity=0.180  Sum_probs=142.6

Q ss_pred             cceEeEEEEeeecCeeeEEEEEEe-ecCeEeecccccceeeEe--ecCeEEEEEEEcCCCEEEEEEecCCcCCcccccee
Q psy11834          3 KITEAQIIETQSSQFIQPYSVKFV-QEALIKENQYCHPQFLIT--QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQ   79 (230)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~--~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q   79 (230)
                      .++.++...+++++|+++++.+++ ++|....|      +++.  ++++|+|++++. + ++||+|             |
T Consensus         9 ~~~~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~------~~~~~~~~~av~vl~~~~-~-~vLLvr-------------q   67 (198)
T 1vhz_A            9 KPTILNVETVARSRLFTVESVDLEFSNGVRRVY------ERMRPTNREAVMIVPIVD-D-HLILIR-------------E   67 (198)
T ss_dssp             CCEEEEEEEEEECSSCEEEEEEEECTTSCEEEE------EEECCCCCCEEEEEEEET-T-EEEEEE-------------E
T ss_pred             CcEEeeEEEEEECCEEEEEEEEEEcCCCCEEEE------EEEEeCCCCEEEEEEEEC-C-EEEEEE-------------c
Confidence            356778888899999999999998 58988888      6665  678899988874 3 999999             9


Q ss_pred             cccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccC
Q psy11834         80 VLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAG  159 (230)
Q Consensus        80 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~  159 (230)
                      +|.+.                      .++.|+||||++|+||++.+||+||++||||+.+  ..+..++.+...++..+
T Consensus        68 ~r~~~----------------------~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~--~~~~~l~~~~~~~~~~~  123 (198)
T 1vhz_A           68 YAVGT----------------------ESYELGFSKGLIDPGESVYEAANRELKEEVGFGA--NDLTFLKKLSMAPSYFS  123 (198)
T ss_dssp             EETTT----------------------TEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEE--EEEEEEEEEECCTTTCC
T ss_pred             ccCCC----------------------CCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCc--CceEEEEEEeCCCCccC
Confidence            98765                      4678999999999999999999999999999999  78888999888888888


Q ss_pred             eEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q psy11834        160 DRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLA  220 (230)
Q Consensus       160 ~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~  220 (230)
                      ..+++|++.....   .....+++|.+++.|++++++.+++.++++.+ +.++.|++|++.
T Consensus       124 ~~~~~f~a~~~~~---~~~~~~~~E~~~~~w~~~~el~~~~~~~~i~~-~~~~~al~~~~~  180 (198)
T 1vhz_A          124 SKMNIVVAQDLYP---ESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNE-ARNVSALFLVRE  180 (198)
T ss_dssp             CEEEEEEEEEEEE---CCCCCCCSSCCCEEEEEGGGGGGGGGCTTTCB-HHHHHHHHHHHH
T ss_pred             cEEEEEEEEeCCc---ccCCCCCCceEEEEEEEHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Confidence            8899999985432   12234678889999999999999999999997 678888877654

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.95  E-value=3.2e-27  Score=199.06  Aligned_cols=175  Identities=13%  Similarity=0.079  Sum_probs=138.2

Q ss_pred             ceEeEEEEeeecCeeeEEEEEEe-ecCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceeccc
Q psy11834          4 ITEAQIIETQSSQFIQPYSVKFV-QEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLL   82 (230)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~   82 (230)
                      ++.++...+++++|+++++.+++ ++|....|      +++.++++|++++++ .++++||+|             |+|.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~G~~~~~------~~~~~~~av~v~i~~-~~~~vLLvr-------------r~r~   65 (207)
T 1mk1_A            6 FETISSETLHTGAIFALRRDQVRMPGGGIVTR------EVVEHFGAVAIVAMD-DNGNIPMVY-------------QYRH   65 (207)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEEC-----CEEE------EEEEECCEEEEEECC-TTSEEEEEE-------------EEET
T ss_pred             cEEEeEEEEEeCCEEEEEEEEEECCCCCEEEE------EEEeCCCEEEEEEEc-CCCEEEEEE-------------eecC
Confidence            56678888899999999999998 58887778      888899999999987 588999999             9887


Q ss_pred             ceeccCCcccccCCccccccCCCCCCcEEEeeeeecC-CCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeE
Q psy11834         83 SVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVD-KNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDR  161 (230)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE-~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~  161 (230)
                      +.                      .+..|+||||++| +||++.+||+||++||||+.+  ..+..++.++..++...+.
T Consensus        66 ~~----------------------~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~  121 (207)
T 1mk1_A           66 TY----------------------GRRLWELPAGLLDVAGEPPHLTAARELREEVGLQA--STWQVLVDLDTAPGFSDES  121 (207)
T ss_dssp             TT----------------------TEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEE--EEEEEEEEECSCTTTBCCC
T ss_pred             CC----------------------CCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcc--cccEEEEEEEcCCCccccE
Confidence            65                      4678999999999 999999999999999999999  7788888887777777667


Q ss_pred             EEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q psy11834        162 QTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAG  224 (230)
Q Consensus       162 ~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  224 (230)
                      +++|++....... .....+++|+.++.|++++++.+++..+++.+ +.++.+++|++.+++|
T Consensus       122 ~~~f~~~~~~~~~-~~~~~~~~E~~~~~Wv~~~el~~~~~~~~i~~-~~~~~al~~~~~~~~~  182 (207)
T 1mk1_A          122 VRVYLATGLREVG-RPEAHHEEADMTMGWYPIAEAARRVLRGEIVN-SIAIAGVLAVHAVTTG  182 (207)
T ss_dssp             EEEEEEEEEEECC-C----------CEEEEEHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHTT
T ss_pred             EEEEEEEccccCC-CCCCCCCCceEEEEEEEHHHHHHHHHcCCcCC-HHHHHHHHHHHHHhcc
Confidence            8899988543211 11113577899999999999999999999997 6778899888887666

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.95  E-value=1.4e-26  Score=195.80  Aligned_cols=169  Identities=14%  Similarity=0.139  Sum_probs=135.7

Q ss_pred             ceEeEEEEeeecCeeeEEEEEEe-ecCeEeecccccceeeEee-------cCeEEEEEEEcCC---CEEEEEEecCCcCC
Q psy11834          4 ITEAQIIETQSSQFIQPYSVKFV-QEALIKENQYCHPQFLITQ-------HKDYYIVMNKITE---AQIIETRSSQFIQP   72 (230)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~-------~~~v~vl~~~~~~---~~vll~r~~~~~~~   72 (230)
                      ++.++...+++++|+++++.+++ ++|..+.|      +++.+       +++|+|+++...+   +++||+|       
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~------~~v~~~~~~~~~~~av~v~~v~~~~~~~~~vlLv~-------   83 (212)
T 2dsc_A           17 QYIISEELISEGKWVKLEKTTYMDPTGKTRTW------ESVKRTTRKEQTADGVAVIPVLQRTLHYECIVLVK-------   83 (212)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEEECTTSCEEEE------EEEEETTCCTTSCSEEEEEEEEECTTSCCEEEEEE-------
T ss_pred             ceEeeEEEEeeCCEEEEEEEEEECCCCCEEEE------EEEEeeccCCCCCCEEEEEEEEeCCCCCcEEEEEE-------
Confidence            56677778899999999999998 69998999      77765       7899888765432   4899999       


Q ss_pred             ccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEE
Q psy11834         73 YSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFR  152 (230)
Q Consensus        73 ~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~  152 (230)
                            |+|++.                      .++.|+||||++|+||++.+||+||++||||+.+  ..+..++.++
T Consensus        84 ------q~R~~~----------------------~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~--~~~~~l~~~~  133 (212)
T 2dsc_A           84 ------QFRPPM----------------------GGYCIEFPAGLIDDGETPEAAALRELEEETGYKG--DIAECSPAVC  133 (212)
T ss_dssp             ------EEEGGG----------------------TEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCC--EEEEECCCEE
T ss_pred             ------eecCCC----------------------CCcEEECCccccCCCCCHHHHHHHHHHHHhCCCc--cceEEeccEE
Confidence                  999875                      4678999999999999999999999999999998  6677666778


Q ss_pred             cCCCccCeEEEEEEEEEcCcccc---cCCCCCCCceEEEEEEcHHHHHHHhh-----cCCCCChHHHHHHH
Q psy11834        153 SGVGSAGDRQTLFFVEVTDDMKV---NSGGGVDEELIEVVEMGLEEAREYLA-----QDEVRSPSGFLFAM  215 (230)
Q Consensus       153 ~~~~~s~~~~~~y~a~~~~~~~~---~~~~~~~~E~~~v~wv~~eE~~~~~~-----~~~~~~~~~~~~a~  215 (230)
                      ..++.++..+++|++.+......   .....+++|.+++.|++++++.+++.     +|.+.++....+++
T Consensus       134 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~g~i~~a~~~~~a~  204 (212)
T 2dsc_A          134 MDPGLSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDALVAEEHLTVDARVYSYAL  204 (212)
T ss_dssp             SCTTTBCCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHHHHHHHHHHCCEEBHHHHHHHH
T ss_pred             cCCCccCceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHHHHhccccCCEEEEHHHHHHHH
Confidence            88888888899999886532211   12234678999999999999999998     78877644333333

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.94  E-value=7.6e-26  Score=185.57  Aligned_cols=170  Identities=18%  Similarity=0.173  Sum_probs=138.4

Q ss_pred             CCcceEeEEEEeeecCeeeEEEEEEe-ecCeE-eecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccce
Q psy11834          1 MNKITEAQIIETQSSQFIQPYSVKFV-QEALI-KENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFV   78 (230)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~   78 (230)
                      |+.++.++...+++++ +++++.+++ ++|.. ..|      +++.+++++++++++ .++++||+|             
T Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~------~~~~~~~~v~v~i~~-~~~~vLL~~-------------   59 (182)
T 2yvp_A            1 MSPWERILLEEILSEP-VRLVKERVRTHTGRELTYV------YRPGPVAASFVLPVT-ERGTALLVR-------------   59 (182)
T ss_dssp             CCSSEEEEEEEEECSS-SCEEEEEEECTTSCEEEEE------EBCSSCEEEEEEEBC-TTSEEEEEE-------------
T ss_pred             CCCceEeeeEEEEeCc-EEEEEEEEECCCCCEeeEE------EEEecCCEEEEEEEc-CCCEEEEEE-------------
Confidence            4667888888889999 999999988 58876 677      778888899998887 478999999             


Q ss_pred             ecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCcc
Q psy11834         79 QVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSA  158 (230)
Q Consensus        79 q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s  158 (230)
                      ++|.+.                      .+..|+||||++|+||++.+||+||++||||+.+  ..+..++.+++.++..
T Consensus        60 r~~~~~----------------------~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~~~  115 (182)
T 2yvp_A           60 QYRHPT----------------------GKFLLEVPAGKVDEGETPEAAARRELREEVGAEA--ETLIPLPSFHPQPSFT  115 (182)
T ss_dssp             EEEGGG----------------------TEEEEECCEEECCTTCCHHHHHHHHHHHHHCEEC--SCEEECCCBCSCTTTB
T ss_pred             eccCCC----------------------CCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCc--ccEEEEEEEeCCCCcc
Confidence            887654                      4578999999999999999999999999999999  7888888777776666


Q ss_pred             CeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHH
Q psy11834        159 GDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWF  218 (230)
Q Consensus       159 ~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~  218 (230)
                      +..+++|++.....  ......+++|..++.|++++++.+++..+.+.+ +.++.|+.++
T Consensus       116 ~~~~~~f~~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~-~~~~~al~~~  172 (182)
T 2yvp_A          116 AVVFHPFLALKARV--VTPPTLEEGELLESLELPLTEVYALLAKGEIQD-ASTALTLFYA  172 (182)
T ss_dssp             CCEEEEEEECSCEE--CSCCCCCTTCCEEEEEEEHHHHHHHHHTTCCCC-HHHHHHHHHH
T ss_pred             ccEEEEEEEecccc--CCCCCCCCCceEEEEEEEHHHHHHHHHcCCcCC-hHHHHHHHHH
Confidence            77888888873211  112223678899999999999999999999987 5667776543

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.94  E-value=2.1e-25  Score=181.30  Aligned_cols=163  Identities=21%  Similarity=0.229  Sum_probs=126.6

Q ss_pred             ceEeEEEEeeecCeeeEEEEEEeecCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccc
Q psy11834          4 ITEAQIIETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLS   83 (230)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~   83 (230)
                      ++.++...+++++|+++++.        ..|      +++.++++|++++++  ++++||+|             |+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~v~~~--------~~~------~~~~~~~~v~vii~~--~~~vLL~~-------------~~r~~   56 (170)
T 1v8y_A            6 YGGVERTYLYRGRILNLALE--------GRY------EIVEHKPAVAVIALR--EGRMLFVR-------------QMRPA   56 (170)
T ss_dssp             -----CEEEEECSSEEEEEE--------TTE------EEEEECCEEEEEEEE--TTEEEEEE-------------CCBTT
T ss_pred             eEEEeEEEEEECCeEEEEEE--------eeE------EEEecCCeEEEEEEE--CCEEEEEE-------------EEeCC
Confidence            55667778899999999887        334      778888899999988  78999999             88876


Q ss_pred             eeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEE
Q psy11834         84 VYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT  163 (230)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~  163 (230)
                      .                      .+..|++|||++|+||++.+||+||++||||+ +  ..+..++.++..++..+...+
T Consensus        57 ~----------------------~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~--~~~~~l~~~~~~~~~~~~~~~  111 (170)
T 1v8y_A           57 V----------------------GLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-S--GDLTYLFSYFVSPGFTDEKTH  111 (170)
T ss_dssp             T----------------------TBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-E--EEEEEEEEEESCTTTBCCEEE
T ss_pred             C----------------------CCCEEECCccccCCCCCHHHHHHHHHHHHHCC-C--cCceeeEEEecCCCccccEEE
Confidence            4                      34678999999999999999999999999999 7  888888888877777777888


Q ss_pred             EEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCC-ChHHHHHHHHHHHHhhcC
Q psy11834        164 LFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR-SPSGFLFAMHWFLAAKAG  224 (230)
Q Consensus       164 ~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~  224 (230)
                      +|++.....   .....+++|..++.|++++++.+++.++.+. + +.+++|+.+++..+++
T Consensus       112 ~f~~~~~~~---~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~-~~~~~al~~~~~~~~~  169 (170)
T 1v8y_A          112 VFLAENLKE---VEAHPDEDEAIEVVWMRPEEALERHQRGEVEFS-ATGLVGVLYYHAFLRG  169 (170)
T ss_dssp             EEEEEEEEE---CC--------CEEEEECHHHHHHHHHTTSCCBC-HHHHHHHHHHHHHCC-
T ss_pred             EEEEEeccc---cCCCCCCCceEEEEEEEHHHHHHHHHCCCEecC-HHHHHHHHHHHHHhhc
Confidence            999885422   1122356788899999999999999999998 6 6889999888877653

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.92  E-value=1.2e-24  Score=172.69  Aligned_cols=135  Identities=19%  Similarity=0.166  Sum_probs=105.2

Q ss_pred             EeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCC
Q psy11834         43 ITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNK  122 (230)
Q Consensus        43 ~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GE  122 (230)
                      +.++++|++++++ .++++||++             |+|.+.                      .++.|+||||++|+||
T Consensus         2 ~~~~~~v~vi~~~-~~~~vLLv~-------------~~r~~~----------------------~~~~w~~PgG~ve~gE   45 (145)
T 2w4e_A            2 PRGPRAVFILPVT-AQGEAVLIR-------------QFRYPL----------------------RATITEIVAGGVEKGE   45 (145)
T ss_dssp             CCCCEEEEEEEEE-TTSEEEEEE-------------EEETTT----------------------TEEEEECEEEECCTTC
T ss_pred             eeeCCEEEEEEEc-CCCEEEEEE-------------EEecCC----------------------CCCEEEeCCccCCCCC
Confidence            4567889999988 478999999             888754                      3568999999999999


Q ss_pred             CHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhc
Q psy11834        123 SLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQ  202 (230)
Q Consensus       123 s~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~  202 (230)
                      |+.+||+||++||||+.+  ..+..++.++..++..+..+++|++.....   +....+++|..++.|++++++.+++.+
T Consensus        46 t~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~~E~~~~~w~~~~el~~~~~~  120 (145)
T 2w4e_A           46 DLGAAAARELLEEVGGAA--SEWVPLPGFYPQPSISGVVFYPLLALGVTL---GAAQLEDTETIERVVLPLAEVYRMLEA  120 (145)
T ss_dssp             CHHHHHHHHHHHHHCEEC--SEEEECCCBBSCTTTCCCEEEEEEEEEEEE---C--------CEEEEEEEHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhCCcc--CeEEEEecCcCCCCccCceEEEEEEEeccc---CCCCCCCCCeEEEEEEeHHHHHHHHHc
Confidence            999999999999999998  778888777777666677888898874321   122236778999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHH
Q psy11834        203 DEVRSPSGFLFAMHWFL  219 (230)
Q Consensus       203 ~~~~~~~~~~~a~~~~~  219 (230)
                      +++.+ +.++.|+.++.
T Consensus       121 ~~~~~-~~~~~a~~~~~  136 (145)
T 2w4e_A          121 GEIQD-GPSSLTLWQAR  136 (145)
T ss_dssp             TCCCB-HHHHHHHHHHH
T ss_pred             CCcCc-HHHHHHHHHHH
Confidence            99987 56777775444

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.81  E-value=7.6e-19  Score=139.49  Aligned_cols=138  Identities=14%  Similarity=0.099  Sum_probs=98.7

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      +.++++++++ .++++||+|             +.+.+..                   ...+..|+||||++|+||++.
T Consensus        13 ~~~~~~vi~~-~~~~vLl~~-------------r~~~~~~-------------------~~~~~~w~~PgG~ve~gE~~~   59 (159)
T 1sjy_A           13 LRAAGVVLLN-ERGDILLVQ-------------EKGIPGH-------------------PEKAGLWHIPSGAVEDGENPQ   59 (159)
T ss_dssp             EEEEEEEEBC-TTCCEEEEE-------------ESCC-----------------------CCCCCEECSEEECCTTSCHH
T ss_pred             EEeEEEEEEe-CCCCEEEEE-------------ecccCcC-------------------CCCCCeEECCccccCCCCCHH
Confidence            4567777776 478999999             7652110                   003467899999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEEEcC-CCccCeEEEEEEEEEcCcccccCCCC-CCCceEEEEEEcHHHHHHHhhcC
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTFRSG-VGSAGDRQTLFFVEVTDDMKVNSGGG-VDEELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~~~~-~~~s~~~~~~y~a~~~~~~~~~~~~~-~~~E~~~v~wv~~eE~~~~~~~~  203 (230)
                      +||+||++||||+.+  ..+..++.+... +.......++|.+.......   ... +++|+.++.|++++++.+++..+
T Consensus        60 ~aa~RE~~EEtGl~~--~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~~E~~~~~W~~~~el~~~~~~~  134 (159)
T 1sjy_A           60 DAAVREACEETGLRV--RPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQT---LAPAFTDEIAEASFVSREDFAQLYAAG  134 (159)
T ss_dssp             HHHHHHHHHHHSCCE--EEEEEEEEEEEECTTSCEEEEEEEEEEECSSCC---CCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCccc--eeeEEEEEEecccCCCceEEEEEEEEEccCCCc---cccCCCCceeEEEEecHHHHHHhhhcc
Confidence            999999999999999  666666654432 11144567888888643210   222 56789999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhh
Q psy11834        204 EVRSPSGFLFAMHWFLAAK  222 (230)
Q Consensus       204 ~~~~~~~~~~a~~~~~~~~  222 (230)
                      .++.. .+..++..+++++
T Consensus       135 ~~~~~-~~~~~~~~~~~~~  152 (159)
T 1sjy_A          135 QIRMY-QTKLFYADALREK  152 (159)
T ss_dssp             CBSCT-HHHHHHHHHHHHH
T ss_pred             cchhh-hhHHHHHHHHhcC
Confidence            99874 4455555555443

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.77  E-value=1.5e-17  Score=131.57  Aligned_cols=106  Identities=19%  Similarity=0.183  Sum_probs=74.4

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEE-EcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF-RSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~-~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      +..|++|||++|+|||+.+||+||++||||+.+  .....++.+ +..++......++|.+......   ....++.|+.
T Consensus        28 ~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~E~~  102 (153)
T 3shd_A           28 KALWNQPAGHLEADETLVEAAARELWEETGISA--QPQHFIRMHQWIAPDKTPFLRFLFAIELEQIC---PTQPHDSDID  102 (153)
T ss_dssp             EEEEECSEEECCTTCCHHHHHHHHHHHHHCCCC--CCCEEEEEEEECCTTSCCEEEEEEEEECSSCC---CCCCCSTTCC
T ss_pred             CCCEECCeEEeCCCCCHHHHHHHHHHHHHCccc--ccCcEEEEEEEecCCCceEEEEEEEEEccccC---cCCCCcccce
Confidence            467999999999999999999999999999999  555555554 3444455556678888765321   1233577889


Q ss_pred             EEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q psy11834        187 EVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAK  222 (230)
Q Consensus       187 ~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~  222 (230)
                      ++.|++++++   ........| ...-++..+++.+
T Consensus       103 ~~~W~~~~el---~~~~~~~~~-~~~~~l~~~~~~~  134 (153)
T 3shd_A          103 CCRWVSAEEI---LQASNLRSP-LVAESIRCYQSGQ  134 (153)
T ss_dssp             EEEEECHHHH---HTCSCBSST-HHHHHHHHHHHTC
T ss_pred             eeEEecHHHh---hccccccCc-hHHHHHHHHHhCC
Confidence            9999999999   333344443 3345555555543

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.77  E-value=6.9e-18  Score=137.36  Aligned_cols=134  Identities=22%  Similarity=0.200  Sum_probs=95.2

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEe-eeeecCCCCCH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEF-CAGIVDKNKSL  124 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el-PgG~VE~GEs~  124 (230)
                      +.++++++++ .++++||.+             +.....                     ..+..|+| |||++++||++
T Consensus        37 ~~~~~v~i~~-~~~~vLl~~-------------R~~~~~---------------------~~~g~w~l~pGG~ve~gE~~   81 (180)
T 2fkb_A           37 HRATYIVVHD-GMGKILVQR-------------RTETKD---------------------FLPGMLDATAGGVVQADEQL   81 (180)
T ss_dssp             EEEEEEEEEC-SSSCEEEEE-------------ECSSCS---------------------SSTTCEESSBCCBCBTTCCH
T ss_pred             eeEEEEEEEC-CCCEEEEEE-------------CCCCCc---------------------cCCCcEEeecCCCCCCCCCH
Confidence            4577888877 467888877             322111                     02456999 99999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCC
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDE  204 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~  204 (230)
                      .+||+||++||||+.+  ..+..++.+....+......++|++...     .....++.|+.++.|++++++.+++.  .
T Consensus        82 ~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~~~~f~~~~~-----~~~~~~~~E~~~~~W~~~~el~~~~~--~  152 (180)
T 2fkb_A           82 LESARREAEEELGIAG--VPFAEHGQFYFEDKNCRVWGALFSCVSH-----GPFALQEDEVSEVCWLTPEEITARCD--E  152 (180)
T ss_dssp             HHHHHHHHHHHHCCBS--CCCEEEEEEEEEETTEEEEEEEEEEECC-----CCCCCCTTTEEEEEEECHHHHHTTGG--G
T ss_pred             HHHHHHHHHHHHCCCc--cceEEEEEEEecCCCceEEEEEEEEecC-----CCcCCChhHhheEEEecHHHHHHHHH--H
Confidence            9999999999999988  6777777766555555556778887732     12223578899999999999999876  4


Q ss_pred             CCChHHHHHHHHHHHHhhcCC
Q psy11834        205 VRSPSGFLFAMHWFLAAKAGQ  225 (230)
Q Consensus       205 ~~~~~~~~~a~~~~~~~~~~~  225 (230)
                      +.  +.+..++..+++.....
T Consensus       153 ~~--~~~~~~l~~~~~~~~~~  171 (180)
T 2fkb_A          153 FT--PDSLKALALWMKRNAKN  171 (180)
T ss_dssp             BC--HHHHHHHHHHHHHC---
T ss_pred             hC--CcHHHHHHHHHHhhcCC
Confidence            43  45566676666655443

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.75  E-value=6.9e-18  Score=132.82  Aligned_cols=107  Identities=18%  Similarity=0.168  Sum_probs=76.1

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      +-++++|+++  ++++||+|             +.                           ...|+||||++|+|||+.
T Consensus         4 ~~aag~vv~~--~~~vLL~~-------------r~---------------------------~g~W~~PgG~ve~gEt~~   41 (134)
T 3i7u_A            4 EFSAGGVLFK--DGEVLLIK-------------TP---------------------------SNVWSFPKGNIEPGEKPE   41 (134)
T ss_dssp             EEEEEEEEEE--TTEEEEEE-------------CT---------------------------TSCEECCEEECCTTCCHH
T ss_pred             EEEEEEEEEE--CCEEEEEE-------------eC---------------------------CCcEECCeeEecCCCCHH
Confidence            4467777776  68999999             31                           134889999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEE---EcCCCc-cCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTF---RSGVGS-AGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~---~~~~~~-s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~  201 (230)
                      +||+||++||||+.+  ..+..++.+   +...+. ....+++|++......    . ..+.|+.++.|++++++.+++.
T Consensus        42 ~aa~RE~~EEtGl~~--~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~-~~~~E~~~~~W~~~~e~~~~l~  114 (134)
T 3i7u_A           42 ETAVREVWEETGVKG--EILDYIGEIHYWYTLKGERIFKTVKYYLMKYKEGE----P-RPSWEVKDAKFFPIKEAKKLLK  114 (134)
T ss_dssp             HHHHHHHHHHHSEEE--EEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEC----C-CCCTTSSEEEEEEHHHHHHHBC
T ss_pred             HHHHHHHHHhcCceE--EEeeeeeeeeEEecCCCceEEEEEEEEEEEEcCCc----C-cCChhheEEEEEEHHHHhhhcC
Confidence            999999999999998  555555532   222222 1223466777754321    1 1245788999999999999864

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.75  E-value=7.5e-18  Score=136.07  Aligned_cols=132  Identities=11%  Similarity=0.044  Sum_probs=94.9

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEE-eeeeecCCCCCH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLE-FCAGIVDKNKSL  124 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-lPgG~VE~GEs~  124 (230)
                      +.++++++++. ++++||+|             +.....                     ..+..|+ +|||++++||++
T Consensus        34 ~~~v~v~i~~~-~~~vLl~~-------------r~~~~~---------------------~~~g~w~~~PgG~ve~gEs~   78 (171)
T 1q27_A           34 VRVVNAFLRNS-QGQLWIPR-------------RSPSKS---------------------LFPNALDVSVGGAVQSGETY   78 (171)
T ss_dssp             CEEEEEEEEET-TTEEEECC-------------SCCSSS---------------------CCCCSCCCSEEEECSSSSCH
T ss_pred             ceEEEEEEECC-CCeEEEEE-------------ecCCCC---------------------CCCCccccccCccccCCCCH
Confidence            66788888874 78999987             321111                     1246788 999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEEEE-cCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcC
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQTFR-SGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~~~-~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~  203 (230)
                      .+||+||++||||+.+....+..++.+. .... .....++|.+... .    ....++.|..++.|++++++.+++...
T Consensus        79 ~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~-~~~~~~~f~~~~~-~----~~~~~~~E~~~~~W~~~~el~~~~~~~  152 (171)
T 1q27_A           79 EEAFRREAREELNVEIDALSWRPLASFSPFQTT-LSSFMCVYELRSD-A----TPIFNPNDISGGEWLTPEHLLARIAAG  152 (171)
T ss_dssp             HHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSC-CSSEEEEEEEECC-C----CCCSCTTTCSCCEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCcccccceEEEEEEeccCCC-CccEEEEEEEEEC-C----ccccCchhhheEEEecHHHHHHHHhcC
Confidence            9999999999999999655578888776 3322 2237778888752 1    122345678889999999999998887


Q ss_pred             CCCChHHHHHHHHHHH
Q psy11834        204 EVRSPSGFLFAMHWFL  219 (230)
Q Consensus       204 ~~~~~~~~~~a~~~~~  219 (230)
                      .... ..++-++..++
T Consensus       153 ~~~~-~~~~~~l~~~~  167 (171)
T 1q27_A          153 EAAK-GDLAELVRRCY  167 (171)
T ss_dssp             SSCC-HHHHHHHHHHH
T ss_pred             CCCc-hhHHHHHHHHH
Confidence            7765 45455554443

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.74  E-value=4.5e-17  Score=130.03  Aligned_cols=90  Identities=22%  Similarity=0.168  Sum_probs=63.2

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEE----cCCCccCeEEEEEEEEEcCcccccCCCCCCCc
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFR----SGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEE  184 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~----~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E  184 (230)
                      ..|.||||++|+|||+.+||.||++||||+.+  .....+..+.    ...........+|++......   .....++|
T Consensus        36 ~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~E  110 (155)
T 3u53_A           36 HHWTPPKGHVEPGEDDLETALRETQEEAGIEA--GQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYD---VEIRLSHE  110 (155)
T ss_dssp             CCEECSEEECCSSCCHHHHHHHHHHHHHCCCG--GGEEEEEEEEEEEEEEETTEEEEEEEEEEEESCTT---CCCCCCTT
T ss_pred             CCEECCeeeccCCCCHHHHHHHHHHHHHCCcc--ccceeeeeEeeeeecCCCcceeEEEEEEEEEeccC---CccCCCcc
Confidence            45899999999999999999999999999998  5554443321    112223334556666654321   11124568


Q ss_pred             eEEEEEEcHHHHHHHhhcC
Q psy11834        185 LIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       185 ~~~v~wv~~eE~~~~~~~~  203 (230)
                      +.++.|++++|+.+++...
T Consensus       111 ~~~~~W~~~~ea~~~~~~~  129 (155)
T 3u53_A          111 HQAYRWLGLEEACQLAQFK  129 (155)
T ss_dssp             EEEEEEECHHHHHHHHCSH
T ss_pred             eeEEEEeEHHHHHHHcCCH
Confidence            9999999999999987643

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.74  E-value=4.5e-18  Score=135.22  Aligned_cols=116  Identities=14%  Similarity=0.132  Sum_probs=86.6

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      .+++++++ .++++||+|             +.+.+                       ....|+||||++|+||++.+|
T Consensus        22 ~v~~~i~~-~~~~vLl~~-------------r~~~~-----------------------~~~~w~~PgG~ve~gE~~~~a   64 (156)
T 3gg6_A           22 VVLAVFLS-EQDEVLLIQ-------------EAKRE-----------------------CRGSWYLPAGRMEPGETIVEA   64 (156)
T ss_dssp             EEEEECBC-TTSEEEEEE-------------CCCTT-----------------------STTCEECSEEECCTTCCHHHH
T ss_pred             EEEEEEEe-CCCEEEEEE-------------ecCCC-----------------------CCCEEECCeeeccCCCCHHHH
Confidence            44555555 478999999             65433                       245789999999999999999


Q ss_pred             HHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCC
Q psy11834        128 AREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR  206 (230)
Q Consensus       128 A~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~  206 (230)
                      |+||++||||+.+  .....++.+....   ....++|++....... .....+++|+.++.|++++++.+++..+.+.
T Consensus        65 a~REl~EEtGl~~--~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~  137 (156)
T 3gg6_A           65 LQREVKEEAGLHC--EPETLLSVEERGP---SWVRFVFLARPTGGIL-KTSKEADAESLQAAWYPRTSLPTPLRAHDIL  137 (156)
T ss_dssp             HHHHHHHHHCEEE--EEEEEEEEEESST---TEEEEEEEEEEEEECC-CCGGGCSSSCSEEEEEETTSCCSSBSCTHHH
T ss_pred             HHHHHHHhhCcee--EeeeEEEEEcCCC---CEEEEEEEEEeeCCee-ccCCCCCcceeeeEEEcHHHCcccccchhHH
Confidence            9999999999999  7777777666532   3456788887643321 1112256788999999999999988877765

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.73  E-value=1.3e-16  Score=125.83  Aligned_cols=106  Identities=16%  Similarity=0.149  Sum_probs=71.1

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEE-EcCCC-ccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF-RSGVG-SAGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~-~~~~~-~s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      +..|+||||++++||++.+||+||++||||+.+  .....++.+ +..++ ......++|.+......   .....+.|+
T Consensus        32 ~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~e~  106 (153)
T 2b0v_A           32 AIKLNQPAGHLEPGESIIQACSREVLEETGHSF--LPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFD---PDRKLDTGI  106 (153)
T ss_dssp             CCEEECSEEECCTTSCHHHHHHHHHHHHHSEEE--EEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEC---TTSCCCTTE
T ss_pred             CCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEe--ccceEEEEEEEeCCCCCcEEEEEEEEEEeCCCC---CCCCCCCCe
Confidence            457999999999999999999999999999999  555555543 22222 22234456777754321   112346788


Q ss_pred             EEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q psy11834        186 IEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAA  221 (230)
Q Consensus       186 ~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~  221 (230)
                      .++.|++++++.++.  ..... +...-++..+++.
T Consensus       107 ~~~~W~~~~el~~~~--~~~~~-~~~~~~l~~~~~~  139 (153)
T 2b0v_A          107 VRAAWFSIDEIRAKQ--AMHRT-PLVMQCIEDYHAG  139 (153)
T ss_dssp             EEEEEEEHHHHHHTG--GGBSS-THHHHHHHHHHTT
T ss_pred             eeEEEecHHHHhhhh--cccCc-HHHHHHHHHHHhC
Confidence            999999999999972  22222 3344455555543

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.73  E-value=2.1e-17  Score=136.27  Aligned_cols=134  Identities=13%  Similarity=0.071  Sum_probs=90.9

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEe-eeeecCCCCCH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEF-CAGIVDKNKSL  124 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el-PgG~VE~GEs~  124 (230)
                      +.+|++++++ .++++||+|             +.....                     ..+..|++ |||++++||++
T Consensus        32 ~~~v~~~i~~-~~g~vLl~~-------------R~~~~~---------------------~~~g~w~~~PgG~ve~gEt~   76 (190)
T 1hzt_A           32 HLAFSSWLFN-AKGQLLVTR-------------RALSKK---------------------AWPGVWTNSVCGHPQLGESN   76 (190)
T ss_dssp             EECEEEEEEC-TTCCEEEEE-------------ECTTCS---------------------SSTTCEEESEEECCCTTCCH
T ss_pred             EEEEEEEEEc-CCCEEEEEE-------------eCCCCC---------------------CCCCcccCcccccCCCCCCH
Confidence            3478888887 478899988             432111                     02467999 99999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCce-EEEEEEEc---CC-Cc-cCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834        125 AEIAREEVLEECGYDVPVEKL-EKIQTFRS---GV-GS-AGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE  198 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l-~~l~~~~~---~~-~~-s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~  198 (230)
                      .+||+||++||||+.+  ..+ ..++.+..   .+ +. .....++|++....     ....+++|+.++.|++++++.+
T Consensus        77 ~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-----~~~~~~~E~~~~~W~~~~el~~  149 (190)
T 1hzt_A           77 EDAVIRRCRYELGVEI--TPPESIYPDFRYRATDPSGIVENEVCPVFAARTTS-----ALQINDDEVMDYQWCDLADVLH  149 (190)
T ss_dssp             HHHHHHHHHHHHCCCB--SCCEEEETTCEEEEECTTSCEEEEECCEEEEEBCS-----CCCCCTTTEEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHCCCc--hhhheeeeeEEEEeeCCCCCcceEEEEEEEEecCC-----CCcCCccceeeEEEecHHHHHH
Confidence            9999999999999999  555 44433211   11 11 23445677777432     1223567899999999999999


Q ss_pred             HhhcCCCCChHHHHHHHHHHHHh
Q psy11834        199 YLAQDEVRSPSGFLFAMHWFLAA  221 (230)
Q Consensus       199 ~~~~~~~~~~~~~~~a~~~~~~~  221 (230)
                      ++..+...-.+.+..++..+++.
T Consensus       150 ~~~~~~~~~~p~~~~~~~~~~~~  172 (190)
T 1hzt_A          150 GIDATPWAFSPWMVMQATNREAR  172 (190)
T ss_dssp             HHHHCGGGBCHHHHHHHHSHHHH
T ss_pred             HHHcChhhcCchHHHHHHHHHHH
Confidence            99988732224445555444443

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.72  E-value=8.2e-17  Score=125.92  Aligned_cols=110  Identities=19%  Similarity=0.141  Sum_probs=79.8

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      ..+++++.+  ++++||+|             +.+.+..                    ..+..|+||||++++||++.+
T Consensus         7 ~~v~~vi~~--~~~vLL~~-------------r~~~~~~--------------------~~~g~w~lPgG~ve~gE~~~~   51 (140)
T 3gwy_A            7 EVVAAVIRL--GEKYLCVQ-------------RGQTKFS--------------------YTSFRYEFPGGKVEEGESLQE   51 (140)
T ss_dssp             EEEEEEEEE--TTEEEEEE-------------C-----------------------------CCEECSEEECCTTCCHHH
T ss_pred             EEEEEEEEe--CCEEEEEE-------------ecCCCCC--------------------CCCCeEECCCccCCCCCCHHH
Confidence            345666665  78999999             5544320                    024568999999999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      ||.||++||||+.+  .....++.+...........++|.+.....      .....|..++.|++++++.++
T Consensus        52 aa~REl~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~------~~~~~E~~~~~W~~~~el~~~  116 (140)
T 3gwy_A           52 ALQREIMEEMDYVI--EVGEKLLTVHHTYPDFEITMHAFLCHPVGQ------RYVLKEHIAAQWLSTREMAIL  116 (140)
T ss_dssp             HHHHHHHHHHCCCE--EEEEEEEEEECCCSSCCEEEEEEEEEECCS------CCCCCSSCEEEEECHHHHTTS
T ss_pred             HHHHHHHHhhCcEE--EeceEEEEEEEEeCCceEEEEEEEEEecCC------cccccccceeEeccHHHHhhC
Confidence            99999999999999  777777766555445566778888886532      223467889999999999875

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.72  E-value=7e-17  Score=128.12  Aligned_cols=111  Identities=16%  Similarity=0.073  Sum_probs=79.6

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceeccc-ceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLL-SVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      +.+|++++++ .++++||++             +.+. +.                      .+..|+||||++++||++
T Consensus         8 ~~~v~~vi~~-~~~~vLL~~-------------r~~~~~~----------------------~~g~w~~PgG~ve~gE~~   51 (153)
T 3grn_A            8 IISVYALIRN-EKGEFLLLR-------------RSENSRT----------------------NAGKWDLPGGKVNPDESL   51 (153)
T ss_dssp             EEEEEEEEEC-TTCCEEEEE-------------ECTTCSS----------------------STTCEECSEEECCTTCCH
T ss_pred             EEEEEEEEEc-CCCcEEEEE-------------EcCCCCC----------------------CCCeEECceeecCCCCCH
Confidence            3466777776 478999998             5543 22                      356799999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      .+||+||++||||+.+  .....++.+...........++|++......     .....|..++.|++++++.++
T Consensus        52 ~~aa~REl~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~~~  119 (153)
T 3grn_A           52 KEGVAREVWEETGITM--VPGDIAGQVNFELTEKKVIAIVFDGGYVVAD-----VKLSYEHIEYSWVSLEKILGM  119 (153)
T ss_dssp             HHHHHHHHHHHHCCCC--CCCSEEEEEEEECSSCEEEEEEEEEEECCCC-----CCCCTTEEEEEEECHHHHTTC
T ss_pred             HHHHHhhhhhhhCcEe--ecceEEEEEEEecCCceEEEEEEEEEecCCc-----EecCCCcceEEEEEHHHhhhc
Confidence            9999999999999999  4444455443333334455677777654221     112478889999999999764

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.72  E-value=2.6e-17  Score=137.21  Aligned_cols=123  Identities=14%  Similarity=0.145  Sum_probs=78.6

Q ss_pred             eEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCC
Q psy11834         42 LITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKN  121 (230)
Q Consensus        42 ~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~G  121 (230)
                      .....-+|++++++..+++|||+|             + +.+                       .+..|+||||++|+|
T Consensus        22 ~~~~~v~v~~~v~~~~~~~vLL~~-------------r-~~~-----------------------~~g~w~lPGG~ve~g   64 (199)
T 3h95_A           22 SMSHQVGVAGAVFDESTRKILVVQ-------------D-RNK-----------------------LKNMWKFPGGLSEPE   64 (199)
T ss_dssp             ----CCEEEEEEEETTTTEEEEEE-------------E-SSS-----------------------STTSBBCCEEECCTT
T ss_pred             cCcccceEEEEEEeCCCCEEEEEE-------------E-cCC-----------------------CCCCEECCccccCCC
Confidence            345567788888886678999988             3 221                       134678999999999


Q ss_pred             CCHHHHHHHHHHhhhCCccCCCceEEEE--EEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834        122 KSLAEIAREEVLEECGYDVPVEKLEKIQ--TFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       122 Es~~eAA~REl~EETGl~v~~~~l~~l~--~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      |++.+||+||++||||+.+  .....++  ..+..++.......+|++......  .....+++|+.++.|++++++.++
T Consensus        65 Es~~~aA~REl~EEtGl~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~  140 (199)
T 3h95_A           65 EDIGDTAVREVFEETGIKS--EFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYS--FTINFCQEECLRCEWMDLNDLAKT  140 (199)
T ss_dssp             CCHHHHHHHHHHHHHCCCE--EEEEEEEEEECC---------CEEEEEEEEESC--CCCCCCTTTEEEEEEEEHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhCCcc--ccceEEEEEeeecCCCCceeEEEEEEEEEcCCC--cccCCCccceeeeEEEeHHHHhhh
Confidence            9999999999999999998  4333333  223333333333344555543211  122346789999999999999998


Q ss_pred             hhcCCC
Q psy11834        200 LAQDEV  205 (230)
Q Consensus       200 ~~~~~~  205 (230)
                      ...+.+
T Consensus       141 ~~~~~~  146 (199)
T 3h95_A          141 ENTTPI  146 (199)
T ss_dssp             SSBCHH
T ss_pred             hhcChH
Confidence            655544

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.71  E-value=1.3e-16  Score=121.77  Aligned_cols=107  Identities=23%  Similarity=0.192  Sum_probs=79.5

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      -++++++++ .++++||+|             +.+                           ..|++|||++++||++.+
T Consensus         3 ~~~~~vi~~-~~~~vLl~~-------------r~~---------------------------g~w~~PgG~ve~gE~~~~   41 (126)
T 1vcd_A            3 LGAGGVVFN-AKREVLLLR-------------DRM---------------------------GFWVFPKGHPEPGESLEE   41 (126)
T ss_dssp             EEEEEEEEC-TTSCEEEEE-------------CTT---------------------------SCEECCEECCCTTCCHHH
T ss_pred             eEEEEEEEc-CCCEEEEEE-------------ECC---------------------------CCccCCcCcCCCCCCHHH
Confidence            367778777 467999998             432                           248899999999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~  201 (230)
                      ||.||++||||+.+  .....++.+..........+++|++......     ...+.|..++.|++++++.+++.
T Consensus        42 aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~w~~~~el~~~~~  109 (126)
T 1vcd_A           42 AAVREVWEETGVRA--EVLLPLYPTRYVNPKGVEREVHWFLMRGEGA-----PRLEEGMTGAGWFSPEEARALLA  109 (126)
T ss_dssp             HHHHHHHHHHCCEE--EEEEEEEEEEEECTTSCEEEEEEEEEEEESC-----CCCCTTCCEEEEECHHHHHHHBC
T ss_pred             HHHHHHHHhhCcEe--eeccEEeEEEEecCCceEEEEEEEEEEcCCC-----CCCCcceeeeEEcCHHHHHHhhc
Confidence            99999999999999  6666666543322333456677877654221     22456788999999999998754

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.3e-17  Score=129.52  Aligned_cols=118  Identities=13%  Similarity=0.158  Sum_probs=82.4

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      .+.+++++++..++++||+|             +.+                          ...|++|||++++|||+.
T Consensus         4 i~~~~~~i~~~~~~~vLl~~-------------r~~--------------------------~g~w~~PgG~ve~gEs~~   44 (146)
T 2jvb_A            4 IPVRGAAIFNENLSKILLVQ-------------GTE--------------------------SDSWSFPRGKISKDENDI   44 (146)
T ss_dssp             SCCEEEEEBCTTSSEEEEEC-------------CSS--------------------------SSCCBCCEECCCSSSCHH
T ss_pred             eEEEEEEEEeCCCCEEEEEE-------------EcC--------------------------CCcEECCcccCCCCCCHH
Confidence            45677777774458999998             432                          235789999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCC-CCCceEEEEEEcHHHHHHHhhcCC
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGG-VDEELIEVVEMGLEEAREYLAQDE  204 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~-~~~E~~~v~wv~~eE~~~~~~~~~  204 (230)
                      +||.||++||||+.+  ..+..+..++.. ...+...++|++......  ..... +++|+.++.|++++++.+++..+.
T Consensus        45 ~aa~RE~~EEtGl~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~~~~~~  119 (146)
T 2jvb_A           45 DCCIREVKEEIGFDL--TDYIDDNQFIER-NIQGKNYKIFLISGVSEV--FNFKPQVRNEIDKIEWFDFKKISKTMYKSN  119 (146)
T ss_dssp             HHHHHHHHHHTSCCC--SSSSCSSCEEEE-EETTEEEEEEEECCCCSS--SCCCCCCSSSCCCEEEEEHHHHHTGGGCSS
T ss_pred             HHHHHHHHHHHCCCc--hHhccccccccc-ccCCceEEEEEEEecccc--ccCCcCCcchhheeEEeEHHHHHhhhcccc
Confidence            999999999999988  443333333322 123345666666532211  11122 467889999999999999999887


Q ss_pred             CCC
Q psy11834        205 VRS  207 (230)
Q Consensus       205 ~~~  207 (230)
                      ++.
T Consensus       120 ~~~  122 (146)
T 2jvb_A          120 IKY  122 (146)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            763

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.70  E-value=6.4e-17  Score=129.56  Aligned_cols=110  Identities=9%  Similarity=0.036  Sum_probs=78.2

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      +-+|++++++  +++|||+|             +.+.+                       .+..|+||||++++||++.
T Consensus        29 ~~~v~~vi~~--~~~vLL~~-------------r~~~~-----------------------~~~~w~lPgG~ve~gEs~~   70 (157)
T 4dyw_A           29 RVGCGAAIVR--DGRILLIK-------------RKRAP-----------------------EAGCWGLPGGKVDWLEPVE   70 (157)
T ss_dssp             EEEEEEEEEE--TTEEEEEE-------------ECSSS-----------------------STTCEECCEEECCTTCCHH
T ss_pred             eeEEEEEEEE--CCEEEEEE-------------ecCCC-----------------------CCCEEECCcccCCCCCCHH
Confidence            3466677776  68999999             65533                       2467899999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEEEcC--CCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTFRSG--VGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE  198 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~~~~--~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~  198 (230)
                      +||+||++||||+.+  .....++.+...  ........++|++......   ....+++|+.++.|++++++.+
T Consensus        71 ~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~E~~~~~W~~~~el~~  140 (157)
T 4dyw_A           71 RAVCREIEEELGIAL--ERATLLCVVDHIDAANGEHWVAPVYLAHAFSGE---PRVVEPDRHEALGWFALDDLPQ  140 (157)
T ss_dssp             HHHHHHHHHHHSCEE--ESCEEEEEEEEEETTTTEEEEEEEEEESEEESC---CCCSCTTTEEEEEEEETTSCCS
T ss_pred             HHHHHHHHHHHCccc--ccCcEEEEEEeeccCCCcEEEEEEEEEEEcCCC---cccCCCCcEeEEEEECHHHccc
Confidence            999999999999999  555555443322  1233345567777654221   1122567899999999999875

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.70  E-value=4.6e-16  Score=122.67  Aligned_cols=116  Identities=18%  Similarity=0.107  Sum_probs=78.4

Q ss_pred             eecCeEEEEEEEc--CCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCC
Q psy11834         44 TQHKDYYIVMNKI--TEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKN  121 (230)
Q Consensus        44 ~~~~~v~vl~~~~--~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~G  121 (230)
                      .++.+|.|+++..  .++++||+|             +.+                          +..|++|||++|+|
T Consensus         3 ~~~~~v~vvi~~~~~~~~~vLl~~-------------r~~--------------------------~g~w~~PgG~ve~g   43 (149)
T 3son_A            3 RQPFQVLVIPFIKTEANYQFGVLH-------------RTD--------------------------ADVWQFVAGGGEDE   43 (149)
T ss_dssp             -CCCEEEEEEEEECSSSEEEEEEE-------------ESS--------------------------SSCEECEEEECCTT
T ss_pred             CCceEEEEEEEEecCCCeEEEEEE-------------EcC--------------------------CCCEeCCccccCCC
Confidence            3466787777643  356899998             432                          24588999999999


Q ss_pred             CCHHHHHHHHHHhhhCCccCCCceEEEEEEEc------C-CCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHH
Q psy11834        122 KSLAEIAREEVLEECGYDVPVEKLEKIQTFRS------G-VGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLE  194 (230)
Q Consensus       122 Es~~eAA~REl~EETGl~v~~~~l~~l~~~~~------~-~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~e  194 (230)
                      |++.+||+||++||||+.+... ...+..++.      . ++......++|.+......  ..... ..|..++.|++++
T Consensus        44 E~~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~-~~E~~~~~W~~~~  119 (149)
T 3son_A           44 EAISETAKRESIEELNLDVDVK-MYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCS--YQVTL-SLEHSELRWVSYE  119 (149)
T ss_dssp             CCHHHHHHHHHHHHHTCCSCCC-EEEEEEEEEEEGGGTCSSSCSEEEEEEEEEECTTTG--GGCCC-CTTEEEEEEECHH
T ss_pred             CCHHHHHHHHHHHHhCCCcccc-eEEEEeeecccceeeccCCceEeEEEEEEEEcCCCC--CcccC-CCceeeEEEeCHH
Confidence            9999999999999999998542 112222111      1 2223345677888764211  11112 4789999999999


Q ss_pred             HHHHHhhc
Q psy11834        195 EAREYLAQ  202 (230)
Q Consensus       195 E~~~~~~~  202 (230)
                      ++.+++..
T Consensus       120 el~~~~~~  127 (149)
T 3son_A          120 SAIQLLEW  127 (149)
T ss_dssp             HHHHHCCC
T ss_pred             HHHHHhcC
Confidence            99988653

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.70  E-value=1.5e-16  Score=126.42  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      +.++++++++ .++++||+|             +.+.                         +..|++|||++++|||+.
T Consensus        14 ~~~v~~~i~~-~~~~vLl~~-------------r~~~-------------------------~g~w~~PgG~ve~gE~~~   54 (165)
T 1f3y_A           14 RRNVGICLMN-NDKKIFAAS-------------RLDI-------------------------PDAWQMPQGGIDEGEDPR   54 (165)
T ss_dssp             CCEEEEEEEC-TTSCEEEEE-------------ETTE-------------------------EEEEECCEEECCTTCCHH
T ss_pred             eeeEEEEEEC-CCCcEEEEe-------------cCCC-------------------------CCcEECCeeccCCCCCHH
Confidence            6788888887 478999999             5432                         246999999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEEEcCCC----------------ccCeEEEEEEEEEcCcc-cccC--CCCCCCceE
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTFRSGVG----------------SAGDRQTLFFVEVTDDM-KVNS--GGGVDEELI  186 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~~~~~~----------------~s~~~~~~y~a~~~~~~-~~~~--~~~~~~E~~  186 (230)
                      +||+||++||||+.+  ..+...........                ..+...++|++...... .+..  ...++.|+.
T Consensus        55 ~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~  132 (165)
T 1f3y_A           55 NAAIRELREETGVTS--AEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFG  132 (165)
T ss_dssp             HHHHHHHHHHHCCCS--EEEEEECSSCCBCCCCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEE
T ss_pred             HHHHHHHHHhhCCCh--hhhhcccccceeeecCccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhh
Confidence            999999999999987  44433221111111                11235678888865432 1111  111467999


Q ss_pred             EEEEEcHHHHHHHhhcC
Q psy11834        187 EVVEMGLEEAREYLAQD  203 (230)
Q Consensus       187 ~v~wv~~eE~~~~~~~~  203 (230)
                      ++.|++++++.+++...
T Consensus       133 ~~~W~~~~el~~~~~~~  149 (165)
T 1f3y_A          133 EWSWVTPEQLIDLTVEF  149 (165)
T ss_dssp             EEEEECHHHHHHHBCGG
T ss_pred             eeEEecHHHHHHHhhhh
Confidence            99999999999987543

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.70  E-value=2.2e-16  Score=122.42  Aligned_cols=88  Identities=16%  Similarity=0.058  Sum_probs=63.8

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEE----EEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCC
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKI----QTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDE  183 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l----~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~  183 (230)
                      +..|++|||++++||++.+||+||++||||+.+  ..+..+    +.+...........++|++.....    .....+.
T Consensus        29 ~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~  102 (138)
T 1ktg_A           29 PHHWTPPKGHVDPGEDEWQAAIRETKEEANITK--EQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNP----DDVQLSH  102 (138)
T ss_dssp             TCCEESSEEECCTTCCHHHHHHHHHHHHHCCCG--GGEEEEEEEEEEEEEEETTEEEEEEEEEEEECSC----CCCCCCT
T ss_pred             CCcEeCCccccCCCCCHHHHHHHHHHHHHCCCc--cceEEeccccceEEEEeCCCceEEEEEEEEecCC----cccCCCc
Confidence            346899999999999999999999999999976  443332    222221123345677888886532    1123567


Q ss_pred             ceEEEEEEcHHHHHHHhh
Q psy11834        184 ELIEVVEMGLEEAREYLA  201 (230)
Q Consensus       184 E~~~v~wv~~eE~~~~~~  201 (230)
                      |..++.|++++++.+++.
T Consensus       103 e~~~~~W~~~~el~~~~~  120 (138)
T 1ktg_A          103 EHQNWKWCELEDAIKIAD  120 (138)
T ss_dssp             TEEEEEEECHHHHHHHHC
T ss_pred             hhcEeEeccHHHHHHhhc
Confidence            899999999999999864

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.69  E-value=1.9e-16  Score=127.80  Aligned_cols=116  Identities=15%  Similarity=0.137  Sum_probs=76.3

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      ..|++++++  ++++||+|             +.+.                         +..|+||||++|+||++.+
T Consensus        24 ~~v~~ii~~--~~~vLL~~-------------r~~~-------------------------~~~w~~PgG~ve~gEs~~~   63 (171)
T 3id9_A           24 VRVTGILIE--DEKVLLVK-------------QKVA-------------------------NRDWSLPGGRVENGETLEE   63 (171)
T ss_dssp             EEEEEEEEE--TTEEEEEE-------------CSST-------------------------TCCEECCEEECCTTCCHHH
T ss_pred             EEEEEEEEE--CCEEEEEE-------------EECC-------------------------CCeEECCCccCCCCCCHHH
Confidence            355666665  68999999             6542                         3468999999999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccc-cCCCCCCCceEEEEEEcHHHHHHHhhcCC
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKV-NSGGGVDEELIEVVEMGLEEAREYLAQDE  204 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~-~~~~~~~~E~~~v~wv~~eE~~~~~~~~~  204 (230)
                      ||+||++||||+.+  .....++.+............+|++........ .....++.|..++.|++++++.++.....
T Consensus        64 aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~  140 (171)
T 3id9_A           64 AMIREMREETGLEV--KIKKLLYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSET  140 (171)
T ss_dssp             HHHHHHHHHHCCCE--EEEEEEEEEEETTSSSCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGTCCTT
T ss_pred             HHHHHHHHHHCCcc--ccceEEEEEcccCCCCcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCHH
Confidence            99999999999998  555555544443333333445566665432211 11122567888999999999998754433

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.69  E-value=1.1e-16  Score=124.26  Aligned_cols=84  Identities=21%  Similarity=0.155  Sum_probs=61.0

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE  187 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~  187 (230)
                      +..|+||||++++||++.+||.||++||||+.+  ..+..++.+.+........+++|.+.....      .....|+.+
T Consensus        34 ~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~~  105 (140)
T 2rrk_A           34 AGLWEFAGGKVEPDESQRQALVRELREELGIEA--TVGEYVASHQREVSGRIIHLHAWHVPDFHG------TLQAHEHQA  105 (140)
T ss_dssp             CCCEECCEEECCTTSCHHHHHHHHHHHHSCEEE--ECCEEEEEEEEEETTEEEEEEEEEESEEEE------CCCCSSCSC
T ss_pred             CCEEECCceecCCCCCHHHHHHHHHHHHHCCee--ecccEEEEEEEecCCcEEEEEEEEEEeeCC------CcCCCccce
Confidence            467999999999999999999999999999998  555666554332222334556777764321      122446668


Q ss_pred             EEEEcHHHHHHH
Q psy11834        188 VVEMGLEEAREY  199 (230)
Q Consensus       188 v~wv~~eE~~~~  199 (230)
                      +.|++++++.++
T Consensus       106 ~~W~~~~el~~~  117 (140)
T 2rrk_A          106 LVWCSPEEALQY  117 (140)
T ss_dssp             EEEECHHHHTTS
T ss_pred             eEEeCHHHHhhC
Confidence            999999999875

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.69  E-value=2.8e-16  Score=124.67  Aligned_cols=112  Identities=11%  Similarity=0.048  Sum_probs=78.1

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      .++++++++ .++++||+|             +.+.+                       .+..|+||||++++||++.+
T Consensus        19 ~~v~~vi~~-~~~~vLl~~-------------r~~~~-----------------------~~g~w~~PgG~ve~gE~~~~   61 (160)
T 1rya_A           19 VSLDFIVEN-SRGEFLLGK-------------RTNRP-----------------------AQGYWFVPGGRVQKDETLEA   61 (160)
T ss_dssp             EEEEEEEEC-TTSCEEEEE-------------ECSSS-----------------------STTSEECCEEECCTTCCHHH
T ss_pred             EEEEEEEEc-CCCEEEEEe-------------ccCCC-----------------------CCCEEECCccccCCCCCHHH
Confidence            366777776 478999998             54422                       24568999999999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEE---EcCC--C---ccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTF---RSGV--G---SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE  198 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~---~~~~--~---~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~  198 (230)
                      ||+||++||||+.+....+..++.+   +...  +   ......++|.+.....    ....++.|..++.|++++++.+
T Consensus        62 aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~e~~~~~W~~~~el~~  137 (160)
T 1rya_A           62 AFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEE----ELLLPDEQHDDYRWLTSDALLA  137 (160)
T ss_dssp             HHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBSSSCEEEEEEEEEEECCGG----GCCCCSSSEEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHCCCCCcccceEEEEEeEEEcccccCCCcCcEEEEEEEEEEcCcc----ccccCCCccceEEEecHHHHhh
Confidence            9999999999999633455555543   2221  0   1134556777775422    1123467889999999999987


Q ss_pred             H
Q psy11834        199 Y  199 (230)
Q Consensus       199 ~  199 (230)
                      +
T Consensus       138 ~  138 (160)
T 1rya_A          138 S  138 (160)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.68  E-value=2.3e-17  Score=145.11  Aligned_cols=118  Identities=16%  Similarity=0.118  Sum_probs=78.6

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      +..++++++++..++++||+|             +++.+                         ..|++|||++|+||++
T Consensus       100 ~v~~v~avv~~~~~~~vLLv~-------------r~~~~-------------------------g~W~lPgG~ve~gEs~  141 (271)
T 2a6t_A          100 RIPVRGAIMLDMSMQQCVLVK-------------GWKAS-------------------------SGWGFPKGKIDKDESD  141 (271)
T ss_dssp             CCCEEEEEEBCSSSSEEEEEE-------------ESSTT-------------------------CCCBCSEEECCTTCCH
T ss_pred             CCCeEEEEEEECCCCEEEEEE-------------EeCCC-------------------------CeEECCcccCCCCcCH
Confidence            346778888875568999999             76532                         3478999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCC-CCCCceEEEEEEcHHHHHHHhhcC
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGG-GVDEELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~-~~~~E~~~v~wv~~eE~~~~~~~~  203 (230)
                      .+||+||++||||+.+  ..+..+.. +..++..+..+++|++......  .... .+++|+.++.|++++++.++...+
T Consensus       142 ~eAA~REl~EEtGl~~--~~l~~~~~-~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~E~~~~~W~~~~el~~~~~~~  216 (271)
T 2a6t_A          142 VDCAIREVYEETGFDC--SSRINPNE-FIDMTIRGQNVRLYIIPGISLD--TRFESRTRKEISKIEWHNLMDLPTFKKNK  216 (271)
T ss_dssp             HHHHHHHHHHHHCCCC--TTTCCTTC-EEEEEETTEEEEEEEECCCCTT--CCCC------EEEEEEEEGGGSTTCC---
T ss_pred             HHHHHHHHHHHhCCCc--eeeeeeee-eccCCcCCceEEEEEEEEecCc--ccCCCCCccceeEEEEEEHHHHHHHHhcC
Confidence            9999999999999998  44433322 2222334556778887643211  1112 256799999999999999987776


Q ss_pred             CC
Q psy11834        204 EV  205 (230)
Q Consensus       204 ~~  205 (230)
                      .+
T Consensus       217 ~~  218 (271)
T 2a6t_A          217 PQ  218 (271)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.68  E-value=1.9e-16  Score=123.60  Aligned_cols=117  Identities=14%  Similarity=0.065  Sum_probs=82.4

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      ..+++++++ .++++||+|             +.+.+.                      .+..|+||||++++||++.+
T Consensus         9 ~~~~~vi~~-~~~~vLl~~-------------r~~~~~----------------------~~g~w~lPgG~ve~gE~~~~   52 (144)
T 3r03_A            9 LVTAAALID-PDGRVLLAQ-------------RPPGKS----------------------LAGLWEFPGGKLEPGETPEA   52 (144)
T ss_dssp             EEEEEEEBC-TTSCEEEEE-------------CCTTSS----------------------STTCEECSEEECCTTCCHHH
T ss_pred             EEEEEEEEc-CCCEEEEEE-------------eCCCCC----------------------CCCcEECCCcEecCCCCHHH
Confidence            445556665 478999998             543332                      35679999999999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCC
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV  205 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~  205 (230)
                      ||.||++||||+.+....+..+..+..........+++|.+.....      .....|..++.|++++++.++......
T Consensus        53 aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~~~~W~~~~el~~~~~~~~~  125 (144)
T 3r03_A           53 ALVRELAEELGVDTRASCLAPLAFASHSYDTFHLLMPLYACRSWRG------RATAREGQTLAWVRAERLREYPMPPAD  125 (144)
T ss_dssp             HHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEEEEEEEEECCCBS------CCCCCSSCEEEEECGGGGGGSCCCTTT
T ss_pred             HHHHHHHHHhCceeeccceEEEEeeeccCCCeEEEEEEEEEEecCC------ccCCCCcceEEEEeHHHhccCCCCcch
Confidence            9999999999999965555666554444344445566777764321      223566778999999999886544333

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.68  E-value=8.7e-16  Score=126.94  Aligned_cols=124  Identities=19%  Similarity=0.090  Sum_probs=83.3

Q ss_pred             ecCeEeecccccceee--Eee-cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccC
Q psy11834         27 QEALIKENQYCHPQFL--ITQ-HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKY  103 (230)
Q Consensus        27 ~~g~~~~~~~~~~~~~--~~~-~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~  103 (230)
                      ++|....+..|..-..  ..+ ..++++++++  +++|||+|             +.+.+.                   
T Consensus        18 ~~G~~~~~~~~~~~~~~~~~~~~~~v~~ii~~--~~~vLL~~-------------r~~~~~-------------------   63 (189)
T 3cng_A           18 PEGDTLPRYICPKCHTIHYQNPKVIVGCIPEW--ENKVLLCK-------------RAIAPY-------------------   63 (189)
T ss_dssp             CTTCSSCEEEETTTTEEECCCCEEEEEEEEEE--TTEEEEEE-------------ESSSSS-------------------
T ss_pred             ccCCCCcceECCCCCCccCCCCceEEEEEEEe--CCEEEEEE-------------ccCCCC-------------------
Confidence            4666655543432211  111 2255666665  78999999             665432                   


Q ss_pred             CCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCC
Q psy11834        104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDE  183 (230)
Q Consensus       104 ~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~  183 (230)
                          ...|+||||++|+||++.+||+||++||||+.+  .....+.. +..+. .....++|++......     ...+.
T Consensus        64 ----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~~~~-~~~~~-~~~~~~~f~~~~~~~~-----~~~~~  130 (189)
T 3cng_A           64 ----RGKWTLPAGFMENNETLVQGAARETLEEANARV--EIRELYAV-YSLPH-ISQVYMLFRAKLLDLD-----FFPGI  130 (189)
T ss_dssp             ----TTCEECSEEECCTTCCHHHHHHHHHHHHHCCCE--EEEEEEEE-EEEGG-GTEEEEEEEEEECCSC-----CCCCT
T ss_pred             ----CCeEECceeeccCCCCHHHHHHHHHHHHHCCcc--ccceeEEE-EecCC-CcEEEEEEEEEeCCCc-----cCCCc
Confidence                346899999999999999999999999999998  43333332 22222 3567788888865321     11367


Q ss_pred             ceEEEEEEcHHHHH
Q psy11834        184 ELIEVVEMGLEEAR  197 (230)
Q Consensus       184 E~~~v~wv~~eE~~  197 (230)
                      |..++.|++++++.
T Consensus       131 E~~~~~W~~~~el~  144 (189)
T 3cng_A          131 ESLEVRLFGEQEIP  144 (189)
T ss_dssp             TEEEEEEECTTTCC
T ss_pred             cceeEEEECHHHcC
Confidence            89999999999986

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.68  E-value=1.3e-16  Score=131.70  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=68.6

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE  187 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~  187 (230)
                      ...|+||||++|+||++.+||+||++||||+.+  ..+..++.+....+..+..+++|++.......  ....+++|+.+
T Consensus        63 ~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~E~~~  138 (194)
T 1nqz_A           63 KGQIAFPGGSLDAGETPTQAALREAQEEVALDP--AAVTLLGELDDVFTPVGFHVTPVLGRIAPEAL--DTLRVTPEVAQ  138 (194)
T ss_dssp             CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCG--GGCEEEEECCCEEETTTEEEEEEEEEECGGGG--GGCCCCTTEEE
T ss_pred             CCeEECCcccCCCCCCHHHHHHHHHHHHHCCCc--cceEEEEEccCccCCCCeEEEEEEEEecCCcc--ccCCCccceeE
Confidence            356899999999999999999999999999999  77777776544333456678889888653211  02346778999


Q ss_pred             EEEEcHHHH-HHHh
Q psy11834        188 VVEMGLEEA-REYL  200 (230)
Q Consensus       188 v~wv~~eE~-~~~~  200 (230)
                      +.|++++++ .+.+
T Consensus       139 ~~W~~~~el~~~~~  152 (194)
T 1nqz_A          139 IITPTLAELRAVPL  152 (194)
T ss_dssp             EECCBHHHHHHSCC
T ss_pred             EEEEEHHHhccCCC
Confidence            999999999 6643

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.67  E-value=2.7e-16  Score=123.07  Aligned_cols=113  Identities=17%  Similarity=0.122  Sum_probs=78.9

Q ss_pred             eecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCC
Q psy11834         44 TQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKS  123 (230)
Q Consensus        44 ~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs  123 (230)
                      ..+.++++++++..++++||+|             +  +                         ...|+||||++++||+
T Consensus        16 ~~~~~~~~vi~~~~~~~vLl~~-------------r--~-------------------------~g~w~~PgG~ve~gE~   55 (148)
T 2azw_A           16 QTRYAAYIIVSKPENNTMVLVQ-------------A--P-------------------------NGAYFLPGGEIEGTET   55 (148)
T ss_dssp             EECCEEEEECEEGGGTEEEEEE-------------C--T-------------------------TSCEECSEEECCTTCC
T ss_pred             eeeeEEEEEEECCCCCeEEEEE-------------c--C-------------------------CCCEeCCCcccCCCCC
Confidence            3466777777774478999998             3  2                         1358899999999999


Q ss_pred             HHHHHHHHHHhhhCCccCCCceEEEEEE----EcCCCc--cCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHH
Q psy11834        124 LAEIAREEVLEECGYDVPVEKLEKIQTF----RSGVGS--AGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAR  197 (230)
Q Consensus       124 ~~eAA~REl~EETGl~v~~~~l~~l~~~----~~~~~~--s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~  197 (230)
                      +.+||+||++||||+.+  .....++.+    +...+.  .....++|.+......     ....+|..++.|++++++.
T Consensus        56 ~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~W~~~~el~  128 (148)
T 2azw_A           56 KEEAIHREVLEELGISV--EIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQL-----SEPLERTNTLHWVAPEEAV  128 (148)
T ss_dssp             HHHHHHHHHHHHHSEEE--EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEC-----SSCC-CCSEEEEECHHHHH
T ss_pred             HHHHHHHHHHHHhCCee--EeeeEEEEEEEEEcCCCCCcceEEEEEEEEEEcCcCC-----cCCCCceeeEEEeeHHHHH
Confidence            99999999999999998  555555442    222222  2234677777754321     1123456689999999999


Q ss_pred             HHhhcC
Q psy11834        198 EYLAQD  203 (230)
Q Consensus       198 ~~~~~~  203 (230)
                      +++..+
T Consensus       129 ~~~~~~  134 (148)
T 2azw_A          129 RLLKRG  134 (148)
T ss_dssp             HHBSCH
T ss_pred             hhhcch
Confidence            986543

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.67  E-value=4.8e-16  Score=121.48  Aligned_cols=113  Identities=18%  Similarity=0.164  Sum_probs=78.7

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      .+.++++++++.+++++||+|             +.+.                         +..|++|||++|+||++
T Consensus         8 ~~~~v~~~i~~~~~~~vLl~~-------------r~~~-------------------------~g~w~~PgG~ve~gE~~   49 (150)
T 2o1c_A            8 RPVSILVVIYAQDTKRVLMLQ-------------RRDD-------------------------PDFWQSVTGSVEEGETA   49 (150)
T ss_dssp             CSEEEEEEEEETTTCEEEEEE-------------CSSS-------------------------TTCEESEEEECCTTCCH
T ss_pred             CceEEEEEEEeCCCCEEEEEE-------------ecCC-------------------------CCceECCccccCCCCCH
Confidence            345788888885458999998             4221                         23688999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEE-----E--Ec------CCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEE
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQT-----F--RS------GVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEM  191 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~-----~--~~------~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv  191 (230)
                      .+||+||++||||+.+....+..++.     +  ..      ..+......++|.+......     .....|..++.|+
T Consensus        50 ~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~~~E~~~~~W~  124 (150)
T 2o1c_A           50 PQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHER-----QIVFTEHLAYKWL  124 (150)
T ss_dssp             HHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCGGGGGGBCTTCCEEEEEEEEEEESSCC-----CCCCSSSSCEEEE
T ss_pred             HHHHHHHHHHHhCCCccccceeEEeeeceeeeeeecccccccCCCCcceEEEEEEEEcCCCC-----CcChhHhhccEee
Confidence            99999999999999984332333321     1  10      11223456778888865321     1123677889999


Q ss_pred             cHHHHHHHh
Q psy11834        192 GLEEAREYL  200 (230)
Q Consensus       192 ~~eE~~~~~  200 (230)
                      +++++.++.
T Consensus       125 ~~~el~~~~  133 (150)
T 2o1c_A          125 DAPAAAALT  133 (150)
T ss_dssp             EHHHHHHHC
T ss_pred             cHHHHHhhh
Confidence            999999875

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.67  E-value=8.7e-17  Score=134.43  Aligned_cols=91  Identities=15%  Similarity=0.058  Sum_probs=66.7

Q ss_pred             EEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEE
Q psy11834        110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVV  189 (230)
Q Consensus       110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~  189 (230)
                      .|+||||++|+||++.+||+||++||||+.+  ..+..++.+....  .....++|++.+...  .........+..++.
T Consensus        67 ~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~--~~~~~l~~~~~~~--~~~~~~~f~~~~~~~--~~~~~~~~e~~~~~~  140 (194)
T 2fvv_A           67 RWIVPGGGMEPEEEPSVAAVREVCEEAGVKG--TLGRLVGIFENQE--RKHRTYVYVLIVTEV--LEDWEDSVNIGRKRE  140 (194)
T ss_dssp             SEECSEEECCTTCCHHHHHHHHHHHHHCEEE--EEEEEEEEEEETT--TTEEEEEEEEEEEEE--CSSCHHHHHHCCCEE
T ss_pred             cEECCCCcCCCCcCHHHHHHHHHHHHhCCcc--ccceEEEEEEcCC--CceEEEEEEEEEccc--cCCCCCcccccceEE
Confidence            5889999999999999999999999999998  6677777766432  345677888775321  111001112345799


Q ss_pred             EEcHHHHHHHhhcCCCC
Q psy11834        190 EMGLEEAREYLAQDEVR  206 (230)
Q Consensus       190 wv~~eE~~~~~~~~~~~  206 (230)
                      |++++++.+++..+...
T Consensus       141 W~~~~el~~~l~~~~~~  157 (194)
T 2fvv_A          141 WFKIEDAIKVLQYHKPV  157 (194)
T ss_dssp             EEEHHHHHHHHTTTCHH
T ss_pred             EEEHHHHHHHHhcCcHH
Confidence            99999999998877554

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.67  E-value=4.4e-16  Score=129.36  Aligned_cols=121  Identities=14%  Similarity=0.131  Sum_probs=76.6

Q ss_pred             EeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCC
Q psy11834         43 ITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNK  122 (230)
Q Consensus        43 ~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GE  122 (230)
                      ...|.++++++++.+++++||+|             +.+                          ...|++|||++|+||
T Consensus        42 ~~~h~~~~~vv~~~~~~~vLL~~-------------r~~--------------------------~g~w~lPgG~ve~gE   82 (197)
T 3fcm_A           42 TIAHLTSSAFAVNKERNKFLMIH-------------HNI--------------------------YNSWAWTGGHSDNEK   82 (197)
T ss_dssp             SSEEEEEEEEEECTTSCEEEEEE-------------ETT--------------------------TTEEECEEEECTTCC
T ss_pred             CCccEEEEEEEEECCCCEEEEEE-------------ecC--------------------------CCCEECCccccCCCC
Confidence            34567888888886556999999             432                          236899999999999


Q ss_pred             CHHHHHHHHHHhhhCCc-cCCC--ceEEEEEEEcCCCc---------cCeEEEEEEEEEcCcccccCCCCCCCceEEEEE
Q psy11834        123 SLAEIAREEVLEECGYD-VPVE--KLEKIQTFRSGVGS---------AGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVE  190 (230)
Q Consensus       123 s~~eAA~REl~EETGl~-v~~~--~l~~l~~~~~~~~~---------s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~w  190 (230)
                      |+.+||+||++||||+. +...  .+..+. ++..++.         .......|++.....   .....+++|+.++.|
T Consensus        83 s~~eaa~REl~EEtGl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~E~~~~~W  158 (197)
T 3fcm_A           83 DQLKVAIKELKEETGVKNPTPLLDKAFALD-VLTVNGHIKRGKYVSSHLHLNLTYLIECSED---ETLMLKEDENSGVMW  158 (197)
T ss_dssp             BHHHHHHHHHHHHHCCSSCEESCSSCSEEE-EEEECCEEETTEEECCEEEEEEEEEEECCTT---SCCCCCC----CEEE
T ss_pred             CHHHHHHHHHHHHHCCCcccccCCCceEEE-EeeecCccccCcccCCceeEEEEEEEEeCCC---cccCCCcccccceEE
Confidence            99999999999999997 4211  111221 2211110         111224455553321   112235688999999


Q ss_pred             EcHHHHHHHhhcCCCC
Q psy11834        191 MGLEEAREYLAQDEVR  206 (230)
Q Consensus       191 v~~eE~~~~~~~~~~~  206 (230)
                      ++++++.+++....+.
T Consensus       159 ~~~~el~~~~~~~~~~  174 (197)
T 3fcm_A          159 IPFNEISKYCSEPHMI  174 (197)
T ss_dssp             EEGGGHHHHCCCGGGH
T ss_pred             ccHHHHHhhcCCHHHH
Confidence            9999999998766553

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.66  E-value=2.3e-16  Score=125.73  Aligned_cols=113  Identities=16%  Similarity=0.118  Sum_probs=79.7

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      ...+++++++ .++++||+|             +.+.+.                      .+..|+||||++|+||++.
T Consensus        29 ~~~~~~~i~~-~~~~vLL~~-------------r~~~~~----------------------~~g~w~~PgG~ve~gE~~~   72 (158)
T 3hhj_A           29 LIVVACALLD-QDNRVLLTQ-------------RPEGKS----------------------LAGLWEFPGGKVEQGETPE   72 (158)
T ss_dssp             EEEEEEEEBC-TTSEEEEEE-------------CCCTTS----------------------CCCCCBCCEEECCTTCCHH
T ss_pred             EEEEEEEEEe-CCCEEEEEE-------------eCCCCC----------------------CCCEEECCceeecCCCCHH
Confidence            3455556665 478999999             544333                      3467899999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHh
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYL  200 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~  200 (230)
                      +||.||++||||+.+....+..++.+...........++|.+....      +.....|..++.|++++++.++.
T Consensus        73 ~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~e~~~~~W~~~~el~~~~  141 (158)
T 3hhj_A           73 ASLIRELEEELGVHVQADNLFPLTFASHGYETFHLLMPLYFCSHYK------GVAQGREGQNLKWIFINDLDKYP  141 (158)
T ss_dssp             HHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSCEEEEEEEEESCCB------SCCCCTTSCEEEEEEGGGGGGSC
T ss_pred             HHHHHHHHHHhCcEeecceEEEEEEEeeccCCcEEEEEEEEEEECC------CccCCccccceEEEcHHHHhhCC
Confidence            9999999999999996555555655444333334455666665332      12345677789999999997754

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.66  E-value=6.4e-16  Score=123.99  Aligned_cols=87  Identities=16%  Similarity=0.142  Sum_probs=55.2

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEE------EEEcCCCccC-e--EEEEEEEEEcCcccccCC
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQ------TFRSGVGSAG-D--RQTLFFVEVTDDMKVNSG  178 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~------~~~~~~~~s~-~--~~~~y~a~~~~~~~~~~~  178 (230)
                      +..|++|||++++||++.+||+||++||||+.+....+..+.      .+....+... .  ...+|.+.....     .
T Consensus        54 ~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  128 (165)
T 3oga_A           54 PGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANR-----D  128 (165)
T ss_dssp             -CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--CCEEEEEEEEEEEEEEESCC-----C
T ss_pred             CCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecCCCCceeEEEEEEEEEeeccCC-----C
Confidence            467999999999999999999999999999998433332211      1111111111 1  123344443211     1


Q ss_pred             CCCCCceEEEEEEcHHHHHHH
Q psy11834        179 GGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       179 ~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      ...++|..++.|++++++.++
T Consensus       129 ~~~~~E~~~~~W~~~~el~~~  149 (165)
T 3oga_A          129 ICINDEFQDYAWVKPEELALY  149 (165)
T ss_dssp             CCCCTTEEEEEEECGGGGGGS
T ss_pred             ccCCchheeeEEccHHHHhhC
Confidence            123468899999999999875

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.65  E-value=3e-16  Score=123.19  Aligned_cols=85  Identities=18%  Similarity=0.135  Sum_probs=61.1

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||||++++||++.+||.||+.||||+.+  .....++.+..........+++|.+.....      .....|..
T Consensus        46 ~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~  117 (153)
T 3ees_A           46 LAGQWEFPGGKIENGETPEEALARELNEELGIEA--EVGELKLACTHSYGDVGILILFYEILYWKG------EPRAKHHM  117 (153)
T ss_dssp             TTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEE--ECCCEEEEEEEEETTEEEEEEEEEECEEES------CCCCSSSS
T ss_pred             CCCeEECCceeeCCCCCHHHHHHHHHHHHHCCcc--ccCceEEEEEEecCCCeEEEEEEEEEECCC------CcCCCccc
Confidence            3567999999999999999999999999999998  444444443332223334456666664321      23456677


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      ++.|++++++.++
T Consensus       118 ~~~W~~~~el~~~  130 (153)
T 3ees_A          118 MLEWIHPEELKHR  130 (153)
T ss_dssp             EEEEECGGGGGGS
T ss_pred             eEEEecHHHhhhC
Confidence            8999999998865

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.65  E-value=2.3e-16  Score=126.79  Aligned_cols=134  Identities=12%  Similarity=0.023  Sum_probs=85.1

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      +.++++++.+..++++||+|             +.+.+                       ....|+||||++++||++.
T Consensus        10 ~~~v~~vi~~~~~~~vLL~~-------------r~~~~-----------------------~~g~w~lPgG~ve~gEs~~   53 (161)
T 3exq_A           10 ELVTMVMVTDPETQRVLVED-------------KVNVP-----------------------WKAGHSFPGGHVEVGEPCA   53 (161)
T ss_dssp             EEEEEEEEBCTTTCCEEEEC-------------CCCCT-----------------------TTCSBBCCCCBCCTTSCHH
T ss_pred             eEEEEEEEEeCCCCEEEEEE-------------ccCCC-----------------------CCCCEEccceecCCCCCHH
Confidence            44566677664336999998             44321                       2234789999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEEEcCC--CccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcC
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTFRSGV--GSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~~~~~--~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~  203 (230)
                      +||+||++||||+.+  ..+..++.+....  .......++|.+.....      .....|..++.|++++++.++... 
T Consensus        54 ~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~~~~W~~~~el~~~~~~-  124 (161)
T 3exq_A           54 TAAIREVFEETGLRL--SGVTFCGTCEWFDDDRQHRKLGLLYRASNFTG------TLKASAEGQLSWLPITALTRENSA-  124 (161)
T ss_dssp             HHHHHHHHHHHCCEE--SCCEEEEEEEEECSSCSSEEEEEEEEECCEES------CCCGGGTTTEEEECGGGCCTTTBC-
T ss_pred             HHHHHHHHHhhCcEe--cCCcEEEEEecccCCCCeEEEEEEEEEeccCC------ccCCCccceEEEeeHHHhhhCccC-
Confidence            999999999999999  5555555543332  22333445555543211      123445567999999998765332 


Q ss_pred             CCCChHHHHHHHHHHHHhhcCCceecC
Q psy11834        204 EVRSPSGFLFAMHWFLAAKAGQYVWRY  230 (230)
Q Consensus       204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~  230 (230)
                           ....-.+..+++ +...+.|.|
T Consensus       125 -----~~~~~~l~~~~~-~~~e~~~~~  145 (161)
T 3exq_A          125 -----ASLPEFLQVFTG-TASTLVSDS  145 (161)
T ss_dssp             -----TTHHHHHHHHTT-SCSEEEESS
T ss_pred             -----hHHHHHHHHHhh-cceeEEEEe
Confidence                 233334455555 556566643

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.64  E-value=5.1e-16  Score=124.04  Aligned_cols=108  Identities=12%  Similarity=0.072  Sum_probs=75.1

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      ++.++++++++  ++++||+|             +.+                          ...|+||||++|+|||+
T Consensus         5 ~~~~v~~vi~~--~~~vLL~~-------------r~~--------------------------~g~w~lPgG~ve~gEs~   43 (159)
T 3f6a_A            5 RHFTVSVFIVC--KDKVLLHL-------------HKK--------------------------AKKMLPLGGHIEVNELP   43 (159)
T ss_dssp             SCEEEEEEEEE--TTEEEEEE-------------CSS--------------------------SCCEECEEEECCTTCCH
T ss_pred             ceEEEEEEEEE--CCEEEEEE-------------cCC--------------------------CCeEECCccCccCCCCH
Confidence            46677888886  68999999             543                          23578999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEE------------EEEcCC---------CccCeEEEEEEEEEcCcccccCCCCCCC
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQ------------TFRSGV---------GSAGDRQTLFFVEVTDDMKVNSGGGVDE  183 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~------------~~~~~~---------~~s~~~~~~y~a~~~~~~~~~~~~~~~~  183 (230)
                      .+||+||++||||+.+  ..+..++            ..+..+         ........+|++.....    ....+++
T Consensus        44 ~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~~  117 (159)
T 3f6a_A           44 EEACIREAKEEAGLNV--TLYNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSF----ETSPEIG  117 (159)
T ss_dssp             HHHHHHHHHHHHCCCC--EECCCCCHHHHHHHHHTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSCS----CCCCCTT
T ss_pred             HHHHHHHHHHHhCCCc--eecccccccccccccccccccccCccccccccCCCCceEEEEEEEEEeCCC----CcCCCCC
Confidence            9999999999999988  3333321            111111         11223446777775432    1122567


Q ss_pred             ceEEEEEEcHHHHHHH
Q psy11834        184 ELIEVVEMGLEEAREY  199 (230)
Q Consensus       184 E~~~v~wv~~eE~~~~  199 (230)
                      |..++.|++++++.++
T Consensus       118 E~~~~~W~~~~el~~~  133 (159)
T 3f6a_A          118 ESKILKWYSKEDLKNA  133 (159)
T ss_dssp             SCCCEEEECSSSSTTC
T ss_pred             cccceEEeeHHHHhhC
Confidence            8889999999998865

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.63  E-value=6.9e-16  Score=129.51  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=79.7

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      ...+|.+++++  ++++||+|             +..                          ...|+||||++|+||++
T Consensus        67 ~~~~v~~vv~~--~~~vLLv~-------------r~~--------------------------~g~w~lPgG~ve~gEs~  105 (205)
T 3q1p_A           67 PKVDIRAVVFQ--NEKLLFVK-------------EKS--------------------------DGKWALPGGWADVGYTP  105 (205)
T ss_dssp             CEEEEEEEEEE--TTEEEEEE-------------C-----------------------------CCEECSEEECCTTCCH
T ss_pred             CcceEEEEEEE--CCEEEEEE-------------EcC--------------------------CCcEECCcCccCCCCCH
Confidence            34566667776  68999999             431                          23588999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEEEEcC----CC-ccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQTFRSG----VG-SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~~----~~-~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      .+||.||++||||+.+  .....++.+...    ++ .......+|.+......    .. .+.|..++.|++++++..+
T Consensus       106 ~~aa~REl~EEtGl~v--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~E~~~~~w~~~~el~~l  178 (205)
T 3q1p_A          106 TEVAAKEVFEETGYEV--DHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGE----KK-TSIETEEVEFFGENELPNL  178 (205)
T ss_dssp             HHHHHHHHHHHHSEEE--EEEEEEEEEEHHHHSCCCCSSCEEEEEEEEEEEEEC----CC-CCTTSCCEEEECTTSCCCB
T ss_pred             HHHHHHHHHHHHCCcc--ccceEEEEEeccccCCCCCCceEEEEEEEEEecCCc----cC-CCCcceEEEEEeHHHhhhc
Confidence            9999999999999999  555555554321    22 23344556666654221    11 2378889999999999887


Q ss_pred             hhcCCCC
Q psy11834        200 LAQDEVR  206 (230)
Q Consensus       200 ~~~~~~~  206 (230)
                      .......
T Consensus       179 ~~~~~~~  185 (205)
T 3q1p_A          179 SIARNTE  185 (205)
T ss_dssp             CTTTCCH
T ss_pred             CCCccHH
Confidence            6665543

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.63  E-value=2.3e-15  Score=117.29  Aligned_cols=79  Identities=19%  Similarity=0.224  Sum_probs=59.3

Q ss_pred             EEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCC--ccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834        111 LEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVG--SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV  188 (230)
Q Consensus       111 ~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~--~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v  188 (230)
                      |+||||++++|||+.+||+||++||||+.+  .....++.+.....  ......++|.+... .    . ...++|..++
T Consensus        39 w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~----~-~~~~~e~~~~  110 (139)
T 2yyh_A           39 LALPGGFVEVGERVEEAAAREMREETGLEV--RLHKLMGVYSDPERDPRAHVVSVVWIGDAQ-G----E-PKAGSDAKKV  110 (139)
T ss_dssp             EECCEEECCTTCCHHHHHHHHHHHHHCCCC--EEEEEEEEECCTTSCTTSCEEEEEEEEEEE-S----C-CCCCTTEEEE
T ss_pred             EECccccCCCCCCHHHHHHHHHHHHHCCCc--ccceEEEEECCCCcCCCceEEEEEEEEecC-C----c-cCCCCCcceE
Confidence            899999999999999999999999999998  55555554433211  13345677888763 1    1 1245688999


Q ss_pred             EEEcHHHHH
Q psy11834        189 VEMGLEEAR  197 (230)
Q Consensus       189 ~wv~~eE~~  197 (230)
                      .|++++++.
T Consensus       111 ~W~~~~el~  119 (139)
T 2yyh_A          111 KVYRLEEIP  119 (139)
T ss_dssp             EEECTTSCC
T ss_pred             EEEEHHHCC
Confidence            999999988

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.63  E-value=2.6e-15  Score=121.59  Aligned_cols=113  Identities=14%  Similarity=0.153  Sum_probs=80.4

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      +.+|++++++. ++++||++             +.+                          ...|++|||++++||++.
T Consensus         8 ~~~v~~~i~~~-~~~vLl~~-------------r~~--------------------------~~~w~~p~G~~e~gE~~~   47 (164)
T 2kdv_A            8 RPNVGIVICNR-QGQVMWAR-------------RFG--------------------------QHSWQFPQGGINPGESAE   47 (164)
T ss_dssp             EEEEEEEEECT-TSEEEEEE-------------ETT--------------------------CCCEECCEEECCTTCCHH
T ss_pred             CcEEEEEEEcc-CCEEEEEE-------------EcC--------------------------CCeEECCeeecCCCCCHH
Confidence            56788888874 68999998             543                          135889999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCceEEEEEE-----EcCCC----------ccCeEEEEEEEEEcCcc-cccCCCCCCCceEEEE
Q psy11834        126 EIAREEVLEECGYDVPVEKLEKIQTF-----RSGVG----------SAGDRQTLFFVEVTDDM-KVNSGGGVDEELIEVV  189 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~l~~l~~~-----~~~~~----------~s~~~~~~y~a~~~~~~-~~~~~~~~~~E~~~v~  189 (230)
                      +||.||++||||+.+  ..+..++.+     +..+.          ..+...++|++...... .+......+.|+.++.
T Consensus        48 ~aa~RE~~EE~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~  125 (164)
T 2kdv_A           48 QAMYRELFEEVGLSR--KDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWR  125 (164)
T ss_dssp             HHHHHHHHHHHCCCG--GGEEEEEECSSCEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEE
T ss_pred             HHHHHHHHHHHCCCc--cceEEEEEecceeEEecCcceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEE
Confidence            999999999999999  667766653     22221          12335678888875432 1111111356899999


Q ss_pred             EEcHHHHHHHh
Q psy11834        190 EMGLEEAREYL  200 (230)
Q Consensus       190 wv~~eE~~~~~  200 (230)
                      |++++++.+.+
T Consensus       126 W~~~~e~~~~l  136 (164)
T 2kdv_A          126 WVSYWYPVRQV  136 (164)
T ss_dssp             EEETTTGGGGS
T ss_pred             EecHHHhhhhh
Confidence            99999886643

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.63  E-value=1.4e-15  Score=124.50  Aligned_cols=84  Identities=18%  Similarity=0.191  Sum_probs=60.8

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc--cCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS--AGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~--s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      +..|+||||++|+||++.+||+||++||||+.+  ..+..++.+......  .....++|.+....      +.....|.
T Consensus        49 ~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~------~~~~~~e~  120 (176)
T 3q93_A           49 AGRWNGFGGKVQEGETIEDGARRELQEESGLTV--DALHKVGQIVFEFVGEPELMDVHVFCTDSIQ------GTPVESDE  120 (176)
T ss_dssp             TTSEECEEEECCTTSCHHHHHHHHHHHHHSCEE--SCCEEEEEEEEEETTCSCEEEEEEEEESCEE------SCCCCCSS
T ss_pred             CCeEECceecCCCCCCHHHHHHHHHHHHHCCcc--eeeEEEEEEEEEcCCCCcEEEEEEEEEECCC------CCcCCCcc
Confidence            456899999999999999999999999999999  677777664332222  22344666665321      12234566


Q ss_pred             EEEEEEcHHHHHHH
Q psy11834        186 IEVVEMGLEEAREY  199 (230)
Q Consensus       186 ~~v~wv~~eE~~~~  199 (230)
                      .++.|++++++..+
T Consensus       121 ~~~~W~~~~el~~~  134 (176)
T 3q93_A          121 MRPCWFQLDQIPFK  134 (176)
T ss_dssp             EEEEEEETTCCCGG
T ss_pred             eeeEEeeHHHcccc
Confidence            78899999998865

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.61  E-value=3.7e-15  Score=117.98  Aligned_cols=105  Identities=14%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             EEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcC-CCccCeEEEEEEEEEcCcccccCCCCCCCceEEEE
Q psy11834        111 LEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSG-VGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVV  189 (230)
Q Consensus       111 ~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~-~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~  189 (230)
                      |++|||++++||++.+||+||++||||+.+  .....++.+... ........++|.+.....      .....|..++.
T Consensus        38 w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~~~~  109 (155)
T 2b06_A           38 YAFPGGHVENDEAFAESVIREIYEETGLTI--QNPQLVGIKNWPLDTGGRYIVICYKATEFSG------TLQSSEEGEVS  109 (155)
T ss_dssp             EECCCCBCCTTSCHHHHHHHHHHHHHSEEE--ESCEEEEEEEEECTTSCEEEEEEEEECEEEE------CCCCBTTBEEE
T ss_pred             EeccceecCCCCCHHHHHHHHHHHHhCccc--cCCcEEEEEeeccCCCceEEEEEEEEEecCC------CCCCCcceeeE
Confidence            789999999999999999999999999999  444444432221 122344556676654321      12235677899


Q ss_pred             EEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCceec
Q psy11834        190 EMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQYVWR  229 (230)
Q Consensus       190 wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  229 (230)
                      |++++++.++....      ...-.+..++.++...+.|.
T Consensus       110 W~~~~el~~~~~~~------~~~~~l~~~~~~~~~~~~~~  143 (155)
T 2b06_A          110 WVQKDQIPNLNLAY------DMLPLMEMMEAPDKSEFFYP  143 (155)
T ss_dssp             EEEGGGGGGSCBCT------THHHHHHHHHCTTCCEEECC
T ss_pred             EeeHHHhhhCCCCh------hHHHHHHHHhCCCceeeEec
Confidence            99999998764432      22223445666666555543

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.60  E-value=2.1e-15  Score=132.65  Aligned_cols=86  Identities=20%  Similarity=0.159  Sum_probs=66.1

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV  188 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v  188 (230)
                      ..|++|||++|+|||+++||+||++||||+.+  ..+.+++.+...  ..+....+|++.....    ....+++|+.++
T Consensus       164 g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v--~~~~~~~~~~~~--~~~~~~~~f~a~~~~~----~~~~~~~E~~~~  235 (269)
T 1vk6_A          164 GVHTVLAGFVEVGETLEQAVAREVMEESGIKV--KNLRYVTSQPWP--FPQSLMTAFMAEYDSG----DIVIDPKELLEA  235 (269)
T ss_dssp             SCCBCEEEECCTTCCHHHHHHHHHHHHHCCEE--EEEEEEEEEEEE--TTEEEEEEEEEEEEEC----CCCCCTTTEEEE
T ss_pred             CcEECCcCcCCCCCCHHHHHHHHHHHHhCcee--eeEEEEEEEecC--CCCEEEEEEEEEECCC----CcCCCCcceEEE
Confidence            35789999999999999999999999999999  778777765432  2334667788876432    122356789999


Q ss_pred             EEEcHHHHHHHhhc
Q psy11834        189 VEMGLEEAREYLAQ  202 (230)
Q Consensus       189 ~wv~~eE~~~~~~~  202 (230)
                      .|++++++..+...
T Consensus       236 ~W~~~~el~~l~~~  249 (269)
T 1vk6_A          236 NWYRYDDLPLLPPP  249 (269)
T ss_dssp             EEEETTSCCSCCCT
T ss_pred             EEEEHHHhhhcccC
Confidence            99999998765433

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.60  E-value=1.5e-16  Score=121.48  Aligned_cols=85  Identities=15%  Similarity=0.112  Sum_probs=60.4

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||||++++||++.+||.||++||||+.+  ..+..++.+.+........+++|.+.....      .....|..
T Consensus        29 ~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~  100 (129)
T 1mut_A           29 MANKLEFPGGKIEMGETPEQAVVRELQEEVGITP--QHFSLFEKLEYEFPDRHITLWFWLVERWEG------EPWGKEGQ  100 (129)
T ss_dssp             SSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSS--CEECCCCCCBCCCSSCEEECCCEEEEECSS------CCCCCSSC
T ss_pred             CCCeEECCccCcCCCCCHHHHHHHHHHHHhCCcc--ccceEEEEEEEecCCceEEEEEEEEEccCC------ccCCcccc
Confidence            3567999999999999999999999999999998  544444443332222223446777775422      12345677


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      ++.|++++++.++
T Consensus       101 ~~~W~~~~el~~~  113 (129)
T 1mut_A          101 PGEWMSLVGLNAD  113 (129)
T ss_dssp             CCEEEESSSCCTT
T ss_pred             eeEEeCHHHcccc
Confidence            8999999998765

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.59  E-value=1.6e-15  Score=124.81  Aligned_cols=89  Identities=20%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc--cCeEEEEEEEEEcCcccccCCCCCCCc
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS--AGDRQTLFFVEVTDDMKVNSGGGVDEE  184 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~--s~~~~~~y~a~~~~~~~~~~~~~~~~E  184 (230)
                      .+..|++|||++|+||++.+||+||++||||+.+  ..+..++.+......  ......+|++....... . .....+|
T Consensus        65 ~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~E  140 (187)
T 3i9x_A           65 EGGKWAVPGGFVDENESAEQAAERELEEETSLTD--IPLIPFGVFDKPGRDPRGWIISRAFYAIVPPEAL-E-KRAAGDD  140 (187)
T ss_dssp             TTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCS--CCCEEEEEECCTTSSTTSSEEEEEEEEECCHHHH-H-HHHHSTT
T ss_pred             CCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCC--cceEEEEEEcCCccCCCCCEEEEEEEEEEcCccc-C-CcCCCCc
Confidence            3567999999999999999999999999999988  777777665432211  12334556555432211 0 0112456


Q ss_pred             eEEEEEEcHHHHHHH
Q psy11834        185 LIEVVEMGLEEAREY  199 (230)
Q Consensus       185 ~~~v~wv~~eE~~~~  199 (230)
                      ..++.|++++++..+
T Consensus       141 ~~~~~W~~~~el~~~  155 (187)
T 3i9x_A          141 AAEIGLFPMTEALEL  155 (187)
T ss_dssp             TTTEEEEEHHHHTTS
T ss_pred             eeEEEEEeHHHcccC
Confidence            667999999999864

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.57  E-value=7.8e-15  Score=116.16  Aligned_cols=86  Identities=16%  Similarity=0.127  Sum_probs=58.9

Q ss_pred             EEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEE---EcCCCcc-CeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF---RSGVGSA-GDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~---~~~~~~s-~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      .|+||||++++||++.+||+||++||||+.+  .....++.+   +...+.. ....++|.+.......  ....+++|.
T Consensus        40 ~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~e~  115 (154)
T 2pqv_A           40 KYYTIGGAIQVNESTEDAVVREVKEELGVKA--QAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAP--LTMQEDEKR  115 (154)
T ss_dssp             EEECEEEECBTTCCHHHHHHHHHHHHHCCCE--EEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSCCC--SEEEETTEE
T ss_pred             eEECcccCcCCCCCHHHHHHHHHHHHhCCee--eeceEEEEEeeeecCCCCcceEEEEEEEEEecCCCC--cccCCCCce
Confidence            5789999999999999999999999999998  444433322   2222221 2244577777543211  001145678


Q ss_pred             EEEEEEcHHHHHHH
Q psy11834        186 IEVVEMGLEEAREY  199 (230)
Q Consensus       186 ~~v~wv~~eE~~~~  199 (230)
                      .++.|++++++..+
T Consensus       116 ~~~~W~~~~el~~~  129 (154)
T 2pqv_A          116 QPCEWIDLDKLQNI  129 (154)
T ss_dssp             EEEEEEEGGGGGGS
T ss_pred             eeEEEeEHHHHhhc
Confidence            89999999999875

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.57  E-value=8.7e-15  Score=122.87  Aligned_cols=91  Identities=14%  Similarity=0.146  Sum_probs=63.9

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEE----cCCC-ccCeEEEEEEEEEcCcccccCCCCCCC
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFR----SGVG-SAGDRQTLFFVEVTDDMKVNSGGGVDE  183 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~----~~~~-~s~~~~~~y~a~~~~~~~~~~~~~~~~  183 (230)
                      ..|+||||++|+||++.+||.||++||||+.+  .....++.+.    ..++ .......+|.+......    .. .+.
T Consensus        91 g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~  163 (206)
T 3o8s_A           91 GLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDV--EAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGE----FQ-PNS  163 (206)
T ss_dssp             SCEECSEEECCTTSCHHHHHHHHHHHHHCEEE--EEEEEEEEEEHHHHCC-----CEEEEEEEEEEEEEC----CC-CCS
T ss_pred             CeEECCeeccCCCCCHHHHHHHHHHHHHCCcc--eeeeEEEEEeccccCCCCCCceEEEEEEEEEecCCe----ec-CCC
Confidence            35789999999999999999999999999999  6666666554    2222 22334456666654221    11 237


Q ss_pred             ceEEEEEEcHHHHHHHhhcCCCC
Q psy11834        184 ELIEVVEMGLEEAREYLAQDEVR  206 (230)
Q Consensus       184 E~~~v~wv~~eE~~~~~~~~~~~  206 (230)
                      |..++.|++++++..+.....+.
T Consensus       164 E~~~~~w~~~~el~~l~~~~~~~  186 (206)
T 3o8s_A          164 ETVASGFFSLDDLPPLYLGKNTA  186 (206)
T ss_dssp             SCSEEEEECTTSCCCBCTTTCCH
T ss_pred             CceEEEEEeHHHhhhccCCCchH
Confidence            88899999999998876655443

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.56  E-value=3.3e-14  Score=127.02  Aligned_cols=138  Identities=13%  Similarity=0.075  Sum_probs=99.9

Q ss_pred             ecCeEEEEEEEcCCC---EEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEE-EeeeeecCC
Q psy11834         45 QHKDYYIVMNKITEA---QIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTL-EFCAGIVDK  120 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~---~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-elPgG~VE~  120 (230)
                      .+.+|.+.+++. ++   ++++.|               |....               ..|    +..| ++|||++++
T Consensus       117 ~~~~vh~~~~~~-~~~~~~lll~r---------------Rs~~K---------------~~~----PG~wd~svaG~i~~  161 (300)
T 3dup_A          117 RAYGVHLNGYVG-AGADLHLWIGR---------------RSPDK---------------SVA----PGKLDNMVAGGQPA  161 (300)
T ss_dssp             CEEEEEEEEEES-CGGGCEEEEEE---------------ECTTC---------------SSS----TTCEEESEEEECCT
T ss_pred             EEEEEEEEEEEe-cCCeeEEEEEe---------------CCCcc---------------cCC----CCccccccccCCCC
Confidence            367888888885 44   888877               44331               123    3456 699999999


Q ss_pred             CCCHHHHHHHHHHhhhCCccCC-CceEEEEE--E--EcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHH
Q psy11834        121 NKSLAEIAREEVLEECGYDVPV-EKLEKIQT--F--RSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEE  195 (230)
Q Consensus       121 GEs~~eAA~REl~EETGl~v~~-~~l~~l~~--~--~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE  195 (230)
                      ||++.+||+||+.||+|+.... ..+..++.  |  ..+.+...+.+++|.+.+..+.   ....+++|+.++.|++++|
T Consensus       162 GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~~~G~~~E~~~vy~~~l~~~~---~p~~~~~EV~~~~~v~~~E  238 (300)
T 3dup_A          162 DLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDF---RPHNTDGEMADFMLWPAAK  238 (300)
T ss_dssp             TSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEEEECCTTC---CCCCTTSSEEEEEEEEHHH
T ss_pred             CCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEecCCCeEEEEEEEEEEEecCCC---cCCCCchHhheEEEECHHH
Confidence            9999999999999999998731 13444433  2  2233455667788877754321   1234788999999999999


Q ss_pred             HHHHhhc-CCCCChHHHHHHHHHHHHh
Q psy11834        196 AREYLAQ-DEVRSPSGFLFAMHWFLAA  221 (230)
Q Consensus       196 ~~~~~~~-~~~~~~~~~~~a~~~~~~~  221 (230)
                      +.+++.+ ++++ |...++++.||+.+
T Consensus       239 l~~~l~~pg~F~-p~~~lV~ldfl~Rh  264 (300)
T 3dup_A          239 VVEAVRTTEAFK-FNVNLTVIDFAIRH  264 (300)
T ss_dssp             HHHHHHHCCCBC-TTHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCcC-ccHHHHHHHHHHHh
Confidence            9999999 9997 46778888888876

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.55  E-value=1.4e-14  Score=119.87  Aligned_cols=86  Identities=15%  Similarity=-0.026  Sum_probs=55.4

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCcc---CeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSA---GDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s---~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      ..|++|||++++||++.+||+||++||||+.+....+..+..+....+..   ....++|.+.....    . .....|.
T Consensus        26 g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~~~~~----~-~~~~~e~  100 (188)
T 3fk9_A           26 GWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEG----E-MLKQSPE  100 (188)
T ss_dssp             CCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEEEEEEEESCEES----C-CCSEETT
T ss_pred             CeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEEEEEEEEECCCC----C-CcCCCCC
Confidence            45899999999999999999999999999999433333333332221111   11445666653211    1 1122344


Q ss_pred             EEEEEEcHHHHHHH
Q psy11834        186 IEVVEMGLEEAREY  199 (230)
Q Consensus       186 ~~v~wv~~eE~~~~  199 (230)
                      .++.|++++++..+
T Consensus       101 ~~~~W~~~~el~~~  114 (188)
T 3fk9_A          101 GKLEWKKKDEVLEL  114 (188)
T ss_dssp             EEEEEEEGGGGGGS
T ss_pred             EeEEEEEHHHhhhC
Confidence            58999999998654

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.54  E-value=1.4e-14  Score=127.06  Aligned_cols=88  Identities=17%  Similarity=0.212  Sum_probs=66.1

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc--cCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS--AGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~--s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      ...|+||||++|+||++.+||.||++||||+.+....+..++.+......  .....++|++.+...    . ...++|.
T Consensus        69 ~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l~~~~~~~r~~~~~~~~~~y~a~~~~~----~-~~~~~E~  143 (273)
T 2fml_A           69 RNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEE----P-LIAGDDA  143 (273)
T ss_dssp             TTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSEEEEEEEEECCCC----C-CCCCTTE
T ss_pred             CCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEEEEEcCCCCCCCceEEEEEEEEEeCCC----C-CCCCcce
Confidence            35689999999999999999999999999988755678888776543221  224556777765422    1 2356788


Q ss_pred             EEEEEEcHHHHHHHh
Q psy11834        186 IEVVEMGLEEAREYL  200 (230)
Q Consensus       186 ~~v~wv~~eE~~~~~  200 (230)
                      .++.|++++++.+++
T Consensus       144 ~~~~W~~~~e~~~~~  158 (273)
T 2fml_A          144 KEVHWFNLERHGQHI  158 (273)
T ss_dssp             EEEEEEEEEEETTEE
T ss_pred             eeEEEEEhhHhhhhh
Confidence            999999999987766

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.53  E-value=4.8e-15  Score=125.33  Aligned_cols=89  Identities=18%  Similarity=0.178  Sum_probs=63.5

Q ss_pred             cEEEeeeeecCCCC-CHHHHHHHHHHhhhCCccCCCce---EEEEEEEcCCCccCeEEEEEEEEEcCccccc------CC
Q psy11834        109 VTLEFCAGIVDKNK-SLAEIAREEVLEECGYDVPVEKL---EKIQTFRSGVGSAGDRQTLFFVEVTDDMKVN------SG  178 (230)
Q Consensus       109 ~~~elPgG~VE~GE-s~~eAA~REl~EETGl~v~~~~l---~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~------~~  178 (230)
                      ..|+||||++|+|| ++.+||.||++||||+.+....+   ..++.+..... ....+++|++.........      ..
T Consensus        66 g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~e~~~~~~  144 (212)
T 1u20_A           66 GRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QKCVTHFYIKELKLEEIERIEAEAVNA  144 (212)
T ss_dssp             SCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SCEEEEEEEEECCHHHHHHHHHHHTTS
T ss_pred             CeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-CcEEEEEEEEEecCCCccccccccccc
Confidence            45899999999999 99999999999999999843322   24555544333 5667888988864321100      11


Q ss_pred             CCCCCceEEEEEEcHHHHHH
Q psy11834        179 GGVDEELIEVVEMGLEEARE  198 (230)
Q Consensus       179 ~~~~~E~~~v~wv~~eE~~~  198 (230)
                      ..++.|..++.|+|++++.+
T Consensus       145 ~~~~~Ev~~~~wvpl~el~~  164 (212)
T 1u20_A          145 KDHGLEVMGLIRVPLYTLRD  164 (212)
T ss_dssp             TTBTTTEEEEEECCCSBCTT
T ss_pred             ccCCcceEEEEEEEHHHhhh
Confidence            12467899999999998854

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.53  E-value=1.2e-13  Score=112.24  Aligned_cols=72  Identities=8%  Similarity=0.160  Sum_probs=54.0

Q ss_pred             EEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEE
Q psy11834        110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVV  189 (230)
Q Consensus       110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~  189 (230)
                      .|++|||++++||++.+||+||++||||+.+  ..+..++.+....    ...++|++...+     ... ..+|+.++.
T Consensus        38 ~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~----~~~~~f~~~~~~-----~~~-~~~E~~~~~  105 (163)
T 3f13_A           38 RYNLPGGKANRGELRSQALIREIREETGLRI--NSMLYLFDHITPF----NAHKVYLCIAQG-----QPK-PQNEIERIA  105 (163)
T ss_dssp             -BBCSEEECCTTCCHHHHHHHHHHHHHCCCC--CEEEEEEEEECSS----EEEEEEEEEC-C-----CCC-CCTTCCEEE
T ss_pred             eEECCceeCCCCCCHHHHHHHHHHHHHCccc--ceeEEEEEEecCC----eEEEEEEEEECC-----cCc-cCCCceEEE
Confidence            5789999999999999999999999999999  7777776654432    566778886431     111 223788999


Q ss_pred             EEcH
Q psy11834        190 EMGL  193 (230)
Q Consensus       190 wv~~  193 (230)
                      |++.
T Consensus       106 W~~~  109 (163)
T 3f13_A          106 LVSS  109 (163)
T ss_dssp             EESS
T ss_pred             EECc
Confidence            9983

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.53  E-value=6.5e-14  Score=120.70  Aligned_cols=118  Identities=12%  Similarity=0.131  Sum_probs=83.2

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCC--
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKN--  121 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~G--  121 (230)
                      .|.+++|++++ .++++||.|               |....               ..    .+..|++| ||++++|  
T Consensus        58 ~h~av~v~v~~-~~g~lLLq~---------------R~~~k---------------~~----~pg~W~~p~gG~v~~Ge~  102 (235)
T 2dho_A           58 LHRAFSVFLFN-TENKLLLQQ---------------RSDAK---------------IT----FPGCFTNTCCSHPLSNPA  102 (235)
T ss_dssp             CEEEEEEEEEC-TTCCEEEEE---------------ECTTC---------------SS----STTCEESSEEECCBSSHH
T ss_pred             eEEEEEEEEEc-CCCEEEEEE---------------ecCcC---------------CC----CCCcEEeccCceecCCCc
Confidence            36788998887 477899877               43220               00    23568898 5999999  


Q ss_pred             ----CC---HHHHHHHHHHhhhCCccC---CCceEEEEEEEc-CC---C-ccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        122 ----KS---LAEIAREEVLEECGYDVP---VEKLEKIQTFRS-GV---G-SAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       122 ----Es---~~eAA~REl~EETGl~v~---~~~l~~l~~~~~-~~---~-~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                          |+   +.+||+||++||||+.+.   ...+..++.+.. .+   + ..++.+++|++..+.     ....+++|..
T Consensus       103 E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~-----~~~~~~~Ev~  177 (235)
T 2dho_A          103 ELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNV-----TLNPDPNEIK  177 (235)
T ss_dssp             HHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEEEEEEEEEECSSSBEEEEEEEEEEEECCC-----CCCCCTTTEE
T ss_pred             ccccccchhHHHHHHHHHHHHHCCCccccChhhcEEEEEEEEeccCCCccceeEEEEEEEEEECC-----CCcCChHHEE
Confidence                88   499999999999999862   124677776432 11   1 123456788887421     2234678999


Q ss_pred             EEEEEcHHHHHHHhhc
Q psy11834        187 EVVEMGLEEAREYLAQ  202 (230)
Q Consensus       187 ~v~wv~~eE~~~~~~~  202 (230)
                      ++.|++++++.+++.+
T Consensus       178 ~~~wv~~~el~~~l~~  193 (235)
T 2dho_A          178 SYCYVSKEELKELLKK  193 (235)
T ss_dssp             EEEEECHHHHHHHHHH
T ss_pred             EEEEEcHHHHHHHHhh
Confidence            9999999999999987

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.53  E-value=6.1e-15  Score=126.01  Aligned_cols=113  Identities=10%  Similarity=0.067  Sum_probs=77.7

Q ss_pred             cCeEEEEEEE--cCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCC
Q psy11834         46 HKDYYIVMNK--ITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKS  123 (230)
Q Consensus        46 ~~~v~vl~~~--~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs  123 (230)
                      .-+|.++++.  ..+++|||++             +.+.+                       ....|++|||++|+|||
T Consensus        13 ~v~v~~vi~~~~~~~~~vLLv~-------------r~~~~-----------------------~~g~w~lPGG~ve~gEs   56 (226)
T 2fb1_A           13 YLGIDCIIFGFNEGEISLLLLK-------------RNFEP-----------------------AMGEWSLMGGFVQKDES   56 (226)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEE-------------CSSSS-----------------------STTCEECEEEECCTTSC
T ss_pred             eEEEEEEEEEEeCCCCEEEEEE-------------CcCCC-----------------------CCCCEECCeeccCCCCC
Confidence            3456666663  3467999999             55432                       23468999999999999


Q ss_pred             HHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc--cCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHh
Q psy11834        124 LAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS--AGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYL  200 (230)
Q Consensus       124 ~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~--s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~  200 (230)
                      +.+||+||++||||+.+  ..+..++.+......  .......|++.+...    .....+.|..++.|++++++.++.
T Consensus        57 ~~~Aa~REl~EEtGl~~--~~~~~l~~~~~~~r~~~~~~v~~~y~a~~~~~----~~~~~~~e~~~~~W~~~~el~~l~  129 (226)
T 2fb1_A           57 VDDAAKRVLAELTGLEN--VYMEQVGAFGAIDRDPGERVVSIAYYALININ----EYDRELVQKHNAYWVNINELPALI  129 (226)
T ss_dssp             HHHHHHHHHHHHHCCCS--CEEEEEEEECCTTSSSSSCEEEEEEEEECCTT----SSCHHHHHHTTEEEEETTSCCCBS
T ss_pred             HHHHHHHHHHHHHCCCC--CceEEEEEeCCCCcCCCceEEEEEEEEEecCc----ccccCCccccceEEEEHHHhhhcc
Confidence            99999999999999998  777777776532211  122334567764321    111134567789999999987543

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.52  E-value=2.2e-14  Score=113.95  Aligned_cols=85  Identities=12%  Similarity=0.032  Sum_probs=59.0

Q ss_pred             CCcEEEeeeeecCCCCCHH-HHHHHHHHhhhC-CccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCc
Q psy11834        107 LGVTLEFCAGIVDKNKSLA-EIAREEVLEECG-YDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEE  184 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~-eAA~REl~EETG-l~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E  184 (230)
                      .+..|+||||.+++||++. +||.||+.|||| +.+  ..+..++.+.+........+++|.+.....      .....|
T Consensus        47 ~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e  118 (155)
T 1x51_A           47 LAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPA--THLRHLGEVVHTFSHIKLTYQVYGLALEGQ------TPVTTV  118 (155)
T ss_dssp             TCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCS--TTCEECCCBCCBCSSCEEEEEEEEEECSSC------CCCCCC
T ss_pred             CCceecCCccccCCCCCHHHHHHHHHHHHHhCCcce--eeeeecceEEEecCCccEEEEEEEEEEcCC------CCCCCC
Confidence            3567999999999999996 999999999999 877  555555544333222223456777764321      112234


Q ss_pred             eEEEEEEcHHHHHHH
Q psy11834        185 LIEVVEMGLEEAREY  199 (230)
Q Consensus       185 ~~~v~wv~~eE~~~~  199 (230)
                      ..++.|++++++.++
T Consensus       119 ~~~~~W~~~~el~~~  133 (155)
T 1x51_A          119 PPGARWLTQEEFHTA  133 (155)
T ss_dssp             CTTEEEEEHHHHHHS
T ss_pred             CCccEEccHHHhhhc
Confidence            456899999999874

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.51  E-value=1.6e-13  Score=121.95  Aligned_cols=112  Identities=13%  Similarity=0.144  Sum_probs=71.7

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      .+|++++++  ++++||+|             +.+.+                       .+..|++|||++|+||++.+
T Consensus       204 ~~v~~vi~~--~~~vLL~~-------------r~~~~-----------------------~~g~w~lPgG~ve~gE~~~~  245 (341)
T 2qjo_A          204 ITTDAVVVQ--AGHVLMVR-------------RQAKP-----------------------GLGLIALPGGFIKQNETLVE  245 (341)
T ss_dssp             EEEEEEEEE--TTEEEEEE-------------CCSSS-----------------------STTCEECSEEECCTTSCHHH
T ss_pred             eEEEEEEEe--CCEEEEEE-------------ecCCC-----------------------CCCeEECCCCcCCCCCCHHH
Confidence            456666664  78999999             54321                       24568999999999999999


Q ss_pred             HHHHHHHhhhCCccCCCc----eEEEEEEEcCCCcc---CeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834        127 IAREEVLEECGYDVPVEK----LEKIQTFRSGVGSA---GDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~----l~~l~~~~~~~~~s---~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      ||+||++||||+.+....    +..... +..++..   ....++|++...... . ....+++|+.++.|++++++.++
T Consensus       246 aa~REl~EEtGl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~~~-~-~~~~~~~e~~~~~W~~~~el~~~  322 (341)
T 2qjo_A          246 GMLRELKEETRLKVPLPVLRGSIVDSHV-FDAPGRSLRGRTITHAYFIQLPGGE-L-PAVKGGDDAQKAWWMSLADLYAQ  322 (341)
T ss_dssp             HHHHHHHHHHCCSSCHHHHHHTEEEEEE-ECCTTSCTTSCEEEEEEEEECCSSS-C-CCCC------CEEEEEHHHHHHT
T ss_pred             HHHHHHhhhhCCccccccccccccceEE-EeCCCCCCCCcEEEEEEEEEecCCC-c-CccCCCCceeeEEEeeHHHHhhh
Confidence            999999999999984222    222222 3323221   234567888754321 0 11135678889999999999985

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.51  E-value=1.1e-13  Score=123.76  Aligned_cols=114  Identities=8%  Similarity=0.012  Sum_probs=77.5

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA  125 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~  125 (230)
                      +.++++++++  ++++||+|             +.+.+                       .+..|++|||++|+|||+.
T Consensus       208 ~~~v~~vv~~--~~~vLL~~-------------r~~~~-----------------------~~g~w~lPgG~ve~gEt~~  249 (352)
T 2qjt_B          208 FVTVDALVIV--NDHILMVQ-------------RKAHP-----------------------GKDLWALPGGFLECDETIA  249 (352)
T ss_dssp             EEEEEEEEEE--TTEEEEEE-------------ESSSS-----------------------STTCEECSEEECCTTSCHH
T ss_pred             ceEEEEEEEE--CCEEEEEE-------------EcCCC-----------------------CCCeEECCCCcCCCCCCHH
Confidence            4566777764  78999999             54422                       2356899999999999999


Q ss_pred             HHHHHHHHhhhCCccCCCc----eEEEEEEEcCCCcc---CeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcH-HHHH
Q psy11834        126 EIAREEVLEECGYDVPVEK----LEKIQTFRSGVGSA---GDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGL-EEAR  197 (230)
Q Consensus       126 eAA~REl~EETGl~v~~~~----l~~l~~~~~~~~~s---~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~-eE~~  197 (230)
                      +||.||++||||+.+....    +.... .+..++..   ....++|++....... .....+++|+.++.|+++ +++.
T Consensus       250 ~aa~REl~EEtGl~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~E~~~~~W~~~~~el~  327 (352)
T 2qjt_B          250 QAIIRELFEETNINLTHEQLAIAKRCEK-VFDYPDRSVRGRTISHVGLFVFDQWPS-LPEINAADDAKDVKWISLGSNIK  327 (352)
T ss_dssp             HHHHHHHHHHHCCSCCHHHHHHHEEEEE-EECCTTSCTTSEEEEEEEEEEECSCSS-CCCCCCCTTEEEEEEEESSHHHH
T ss_pred             HHHHHHHHHhhCCCcccchhcceeeeeE-EecCCCCCCCccEEEEEEEEEEeCCCC-CCccCCCccceEEEEecHHHHHH
Confidence            9999999999999984222    22222 23333221   1355677787643210 011124678999999999 9999


Q ss_pred             HH
Q psy11834        198 EY  199 (230)
Q Consensus       198 ~~  199 (230)
                      ++
T Consensus       328 ~~  329 (352)
T 2qjt_B          328 NI  329 (352)
T ss_dssp             HT
T ss_pred             hh
Confidence            86

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.51  E-value=1.3e-13  Score=124.99  Aligned_cols=93  Identities=16%  Similarity=0.171  Sum_probs=64.7

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEc--CC-C----------ccCeEEEEEEEEEcCccc-
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRS--GV-G----------SAGDRQTLFFVEVTDDMK-  174 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~--~~-~----------~s~~~~~~y~a~~~~~~~-  174 (230)
                      ..|+||||++|+||++.+||+||++||||+.+  .....++.+..  .. +          .....+++|++....... 
T Consensus        49 g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~--~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  126 (364)
T 3fjy_A           49 DDWSWPKGKLEQNETHRHAAVREIGEETGSPV--KLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDA  126 (364)
T ss_dssp             TEEECCEEECCTTCCHHHHHHHHHHHHHSCCE--EEEEEEEEEC---------------------CEEEEEEEECCHHHH
T ss_pred             CCEECCcCCCCCCCCHHHHHHHHHHHHhCCee--eeccccceEEEeccCCCcccccccccccCceEEEEEEEEecCCccc
Confidence            56899999999999999999999999999998  55555553222  11 1          123567788888654321 


Q ss_pred             ------ccCC-CCCCCceEEEEEEcHHHHHHHhhcC
Q psy11834        175 ------VNSG-GGVDEELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       175 ------~~~~-~~~~~E~~~v~wv~~eE~~~~~~~~  203 (230)
                            ..+. ..+++|+.++.|++++++.+++...
T Consensus       127 ~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~  162 (364)
T 3fjy_A          127 EHLLDAFGPVHRADVGEINDIVWVSVREARKILSHS  162 (364)
T ss_dssp             HTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCH
T ss_pred             cccccccCccccCCccceeeeecCcHHHHHHHhcch
Confidence                  1111 2356789999999999999987543

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.51  E-value=9.1e-14  Score=120.66  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=82.9

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeee-eecCCC--
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCA-GIVDKN--  121 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPg-G~VE~G--  121 (230)
                      .|.+++|++++ .++++||.|               |....               ..    .+..|++|+ |++++|  
T Consensus        69 ~h~av~v~v~~-~~g~lLLqr---------------Rs~~K---------------~~----~pG~W~~p~gG~v~~G~~  113 (246)
T 2pny_A           69 LHRAFSVVLFN-TKNRILIQQ---------------RSDTK---------------VT----FPGYFTDSCSSHPLYNPA  113 (246)
T ss_dssp             CEEEEEEEEEC-TTCCEEEEE---------------ECTTC---------------SS----STTCBCCSEEECCBSSHH
T ss_pred             EEEEEEEEEEe-CCCEEEEEE---------------ecCCC---------------CC----CCCceEeccCceeccCCc
Confidence            36788998887 477898877               43220               01    234577885 999999  


Q ss_pred             ----CCH---HHHHHHHHHhhhCCccC---CCceEEEEEEEc-CC---C-ccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        122 ----KSL---AEIAREEVLEECGYDVP---VEKLEKIQTFRS-GV---G-SAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       122 ----Es~---~eAA~REl~EETGl~v~---~~~l~~l~~~~~-~~---~-~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                          |++   .+||+||++||||+.+.   ...+.+++.+.. .+   + ..++.+++|++..+.     ....+++|+.
T Consensus       114 E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~-----~~~~~~~Ev~  188 (246)
T 2pny_A          114 ELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNV-----TLNPDPSETK  188 (246)
T ss_dssp             HHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEEEEEEEEEESSSSBEEEEEEEEEEEECCC-----CCCCCTTTEE
T ss_pred             ccccccchhHHHHHHHHHHHHHCCCccccCccccEEEEEEEEEecCCCceeeeEEEEEEEEEECC-----CCCCChHHee
Confidence                887   99999999999999862   124677766432 11   1 123456788887421     2234678999


Q ss_pred             EEEEEcHHHHHHHhhc
Q psy11834        187 EVVEMGLEEAREYLAQ  202 (230)
Q Consensus       187 ~v~wv~~eE~~~~~~~  202 (230)
                      ++.|++++++.+++.+
T Consensus       189 ~~~wv~~eel~~~l~~  204 (246)
T 2pny_A          189 SILYLSQEELWELLER  204 (246)
T ss_dssp             EEEEECHHHHHHHHHH
T ss_pred             EEEEEeHHHHHHHHHh
Confidence            9999999999999988

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.50  E-value=4.3e-13  Score=115.66  Aligned_cols=110  Identities=17%  Similarity=0.137  Sum_probs=80.1

Q ss_pred             CcEEEeeeeecCCCCC--------------------HHHHHHHHHHhhhCCccCC-------------------------
Q psy11834        108 GVTLEFCAGIVDKNKS--------------------LAEIAREEVLEECGYDVPV-------------------------  142 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs--------------------~~eAA~REl~EETGl~v~~-------------------------  142 (230)
                      +..|.||||++|++|+                    +..||+||++||||+.+..                         
T Consensus        39 ~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~  118 (232)
T 3qsj_A           39 PGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDTPLAPDEQADLCKGGD  118 (232)
T ss_dssp             TTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEECTTCCBCCSCCCHHHHHHHTTCTT
T ss_pred             CCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccccccCcccChhhHHHHHHHHHcCch
Confidence            4568899999999887                    5899999999999996521                         


Q ss_pred             ---------------CceEEEEEEEcCCCccCeE-EEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCC
Q psy11834        143 ---------------EKLEKIQTFRSGVGSAGDR-QTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR  206 (230)
Q Consensus       143 ---------------~~l~~l~~~~~~~~~s~~~-~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~  206 (230)
                                     ..|.......+.++...-. .++|++... .  ......+..|..++.|++++++.+...+|++.
T Consensus       119 ~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lp-q--~~~v~~d~~E~~~~~W~~p~eal~~~~~G~i~  195 (232)
T 3qsj_A          119 ALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQ-H--LGEPRLHGAELDAALWTPARDMLTRIQSGELP  195 (232)
T ss_dssp             HHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECS-S--CCCCCCCSSSEEEEEEEEHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECC-C--CCCCCCCCCceEEEEEEcHHHHHHHHHcCCce
Confidence                           1234455555555544433 345555543 1  11113478999999999999999999999998


Q ss_pred             ChHHHHHHHHHHHH
Q psy11834        207 SPSGFLFAMHWFLA  220 (230)
Q Consensus       207 ~~~~~~~a~~~~~~  220 (230)
                      .++.+.+-|..+..
T Consensus       196 L~pPT~~~L~~L~~  209 (232)
T 3qsj_A          196 AVRPTIAVLKALVA  209 (232)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             echhHHHHHHHHHc
Confidence            88888888766554

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.50  E-value=6.6e-14  Score=111.64  Aligned_cols=32  Identities=28%  Similarity=0.353  Sum_probs=30.2

Q ss_pred             EEEeeeeecCCCCCHHHHHHHHHHhhhCCccC
Q psy11834        110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVP  141 (230)
Q Consensus       110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~  141 (230)
                      .|++|||++|+||++.+||.||++||||+.+.
T Consensus        24 ~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   55 (156)
T 1k2e_A           24 VYIYPGGHVEHNETPIEAVKREFEEETGIVVE   55 (156)
T ss_dssp             SEECSEEECCTTCCHHHHHHHHHHHHHSEEEE
T ss_pred             cEECCeeecCCCCCHHHHHHHHHHHHHCCcce
Confidence            48899999999999999999999999999884

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.48  E-value=5.7e-14  Score=121.07  Aligned_cols=85  Identities=11%  Similarity=0.025  Sum_probs=61.1

Q ss_pred             CcEEEeeeeecCC--CCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCC--ccCeEEEEEEEEEcCcccccCCCCCCC
Q psy11834        108 GVTLEFCAGIVDK--NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVG--SAGDRQTLFFVEVTDDMKVNSGGGVDE  183 (230)
Q Consensus       108 ~~~~elPgG~VE~--GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~--~s~~~~~~y~a~~~~~~~~~~~~~~~~  183 (230)
                      ...|++|||++++  |||+.+||+||++||||+.+  ..+..++.+.....  ........|++.+......    ...+
T Consensus        50 ~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~--~~~~~l~~~~~~~r~~~~~~~~~~y~a~~~~~~~~----~~~~  123 (240)
T 3gz5_A           50 LGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVP--PYIEQLCTVGNNSRDARGWSVTVCYTALMSYQACQ----IQIA  123 (240)
T ss_dssp             TTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCC--SEEEEEEEEEESSSSTTSCEEEEEEEEECCHHHHH----HHHT
T ss_pred             CCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCC--CceeeEEEeCCCccCCCceEEEEEEEEEecccccC----CCCC
Confidence            3568999999999  99999999999999999998  77877777655321  2234456667665422111    1234


Q ss_pred             ceEEEEEEcHHHHHH
Q psy11834        184 ELIEVVEMGLEEARE  198 (230)
Q Consensus       184 E~~~v~wv~~eE~~~  198 (230)
                      |..++.|++++++..
T Consensus       124 e~~~~~W~~~~el~~  138 (240)
T 3gz5_A          124 SVSDVKWWPLADVLQ  138 (240)
T ss_dssp             TCTTEEEEEHHHHTT
T ss_pred             cccceEEecHHHccc
Confidence            556799999999863

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.44  E-value=1.2e-13  Score=117.73  Aligned_cols=87  Identities=20%  Similarity=0.113  Sum_probs=61.3

Q ss_pred             cEEEe-eeeecCCCCC--H----HHHHHHHHHhhhCCccCCCceEEEEEEEcCC--CccCeEEEEEEEEEcCcccccCCC
Q psy11834        109 VTLEF-CAGIVDKNKS--L----AEIAREEVLEECGYDVPVEKLEKIQTFRSGV--GSAGDRQTLFFVEVTDDMKVNSGG  179 (230)
Q Consensus       109 ~~~el-PgG~VE~GEs--~----~eAA~REl~EETGl~v~~~~l~~l~~~~~~~--~~s~~~~~~y~a~~~~~~~~~~~~  179 (230)
                      ..|++ |||++|+||+  +    .+||+||++||||+.+  ..+..++.+....  ........+|.|....      +.
T Consensus        97 g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v--~~~~~ig~~~~~~~~~~~~~l~~~f~~~~~~------g~  168 (211)
T 3e57_A           97 NLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSL--RELEFLGLINSSTTEVSRVHLGALFLGRGKF------FS  168 (211)
T ss_dssp             --CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEE--EEEEEEEEEECCSSHHHHTEEEEEEEEEEEE------EE
T ss_pred             CCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCee--eccEEEEEEeccCCCCCeEEEEEEEEEEeCC------ce
Confidence            35668 9999999999  5    9999999999999988  7777776654321  1122233467777442      12


Q ss_pred             CCCCceEEEEEEcHHHHHHHhhcC
Q psy11834        180 GVDEELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       180 ~~~~E~~~v~wv~~eE~~~~~~~~  203 (230)
                      ..+.|..++.|++++++.++..+-
T Consensus       169 ~~~~E~~~~~W~~~~eL~~~~~~l  192 (211)
T 3e57_A          169 VKEKDLFEWELIKLEELEKFSGVM  192 (211)
T ss_dssp             ESCTTTCEEEEEEHHHHHHHGGGC
T ss_pred             eCCCCeEEEEEEEHHHHHHhHhhc
Confidence            234566789999999999986543

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.39  E-value=2e-13  Score=116.24  Aligned_cols=89  Identities=25%  Similarity=0.247  Sum_probs=59.0

Q ss_pred             cEEEeeeeecCCCC-CHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc-cCeEEEEEEEEEcCccc--c----cCCCC
Q psy11834        109 VTLEFCAGIVDKNK-SLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS-AGDRQTLFFVEVTDDMK--V----NSGGG  180 (230)
Q Consensus       109 ~~~elPgG~VE~GE-s~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~-s~~~~~~y~a~~~~~~~--~----~~~~~  180 (230)
                      ..|+||||++|+|| ++.+||+||++||||+.+....+..+..+...++. .....++|++.+.....  .    .....
T Consensus        75 g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~e~~~~~~~~  154 (217)
T 2xsq_A           75 GRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKD  154 (217)
T ss_dssp             SCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCHHHHHHHHHHGGGSTT
T ss_pred             CeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEeccccceecccccccccc
Confidence            45899999999999 99999999999999999843233322222222222 24455666666542211  0    00122


Q ss_pred             CCCceEEEEEEcHHHHH
Q psy11834        181 VDEELIEVVEMGLEEAR  197 (230)
Q Consensus       181 ~~~E~~~v~wv~~eE~~  197 (230)
                      ++.|.+++.|+|++++.
T Consensus       155 ~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          155 HGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             BTTTEEEEEECCCSBCT
T ss_pred             cCCceeeEEEEEHHHhh
Confidence            46789999999998875

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.25  E-value=1.2e-11  Score=112.85  Aligned_cols=81  Identities=21%  Similarity=0.113  Sum_probs=56.7

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||||++|+| ++.+|+.||+.||||+.+  .....++.+.+.........++|.+.....         ..|..
T Consensus       265 ~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v--~~~~~l~~~~h~~~h~~~~~~~~~~~~~~~---------~~e~~  332 (369)
T 3fsp_A          265 LANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQV--ELTEPIVSFEHAFSHLVWQLTVFPGRLVHG---------GPVEE  332 (369)
T ss_dssp             TTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCE--EECCCCCEEEEECSSEEEEEEEEEEEECCS---------SCCCT
T ss_pred             cCCcccCCCcccCCC-CcHHHHHHHHHHHhCCce--eeecccccEEEEcceEEEEEEEEEEEEcCC---------CCCcc
Confidence            457899999999999 999999999999999988  433344443332222334456676665321         23445


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      ++.|++++++..+
T Consensus       333 ~~~Wv~~~el~~~  345 (369)
T 3fsp_A          333 PYRLAPEDELKAY  345 (369)
T ss_dssp             TEEEEEGGGGGGS
T ss_pred             ccEEeeHHHhhhC
Confidence            6899999998763

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.19  E-value=1.2e-10  Score=103.28  Aligned_cols=90  Identities=11%  Similarity=0.046  Sum_probs=55.4

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCC------------CceE-----EEE-EEEcCCCccC---eEEEEEEE
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPV------------EKLE-----KIQ-TFRSGVGSAG---DRQTLFFV  167 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~------------~~l~-----~l~-~~~~~~~~s~---~~~~~y~a  167 (230)
                      ..|+||||++|+||++.+||+||++||||+.+..            ..+.     .+. .+...+..+.   ....+|++
T Consensus       150 g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~d~~~~~~~~f~~  229 (292)
T 1q33_A          150 GEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNY  229 (292)
T ss_dssp             CSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEE
T ss_pred             CcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCCCcccEEEEEEEEE
Confidence            3588999999999999999999999999998311            1111     111 1222232221   12345555


Q ss_pred             EEcCcccccCCC-CCCCceEEEEEEcHHHHHH
Q psy11834        168 EVTDDMKVNSGG-GVDEELIEVVEMGLEEARE  198 (230)
Q Consensus       168 ~~~~~~~~~~~~-~~~~E~~~v~wv~~eE~~~  198 (230)
                      .......+.... ..++|+.++.|++++++..
T Consensus       230 ~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~  261 (292)
T 1q33_A          230 HDETGEIMDNLMLEAGDDAGKVKWVDINDKLK  261 (292)
T ss_dssp             EESSSTTTTTCCCCCCTTCSEEEEEECCTTCC
T ss_pred             EeCCCccccccccCCCCccceEEEEEcccCcc
Confidence            543222111111 2467888999999999874

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.70  E-value=8.3e-08  Score=81.10  Aligned_cols=59  Identities=15%  Similarity=0.162  Sum_probs=43.9

Q ss_pred             EEEeeeeecCCCCCHHHHHHHHHHhhhCC------ccCCCceEEEEEEEcCC-------------CccCeEEEEEEEEEc
Q psy11834        110 TLEFCAGIVDKNKSLAEIAREEVLEECGY------DVPVEKLEKIQTFRSGV-------------GSAGDRQTLFFVEVT  170 (230)
Q Consensus       110 ~~elPgG~VE~GEs~~eAA~REl~EETGl------~v~~~~l~~l~~~~~~~-------------~~s~~~~~~y~a~~~  170 (230)
                      .|+||||++++||++++|++|||.||+|.      ..  ..-..++.++...             ....+...+|++...
T Consensus        84 ~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~--eIge~lg~wwRp~fet~~YPYlP~Hit~pKE~~kly~V~Lp  161 (208)
T 3bho_A           84 FFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDW--VIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQ  161 (208)
T ss_dssp             EEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----C--EEEEEEEEEEECSSSSCCBSSCCTTCCSCSEEEEEEEEECC
T ss_pred             cEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccE--EEhheEEEEecCCCCCcCCCCCCcccCchhhheeeeeEecC
Confidence            68999999999999999999999999994      33  3345566655431             223566778888754

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.70  E-value=8.3e-09  Score=86.76  Aligned_cols=83  Identities=16%  Similarity=0.105  Sum_probs=54.0

Q ss_pred             CcEEEeeeeecCCCC-CHHHHHHHHHHhhhCC-ccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccc------cCCC
Q psy11834        108 GVTLEFCAGIVDKNK-SLAEIAREEVLEECGY-DVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKV------NSGG  179 (230)
Q Consensus       108 ~~~~elPgG~VE~GE-s~~eAA~REl~EETGl-~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~------~~~~  179 (230)
                      +..|+||||+||+|| |+++|+.||+.||+|+ .+  ....++.+...... .....++|.|.....+..      ....
T Consensus        53 ~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V--~~~~y~~s~~~~yp-~~V~LHfY~crl~~Ge~~~lE~~A~~A~  129 (214)
T 3kvh_A           53 DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRL--TEADYLSSHLTEGP-HRVVAHLYARQLTLEQLHAVEISAVHSR  129 (214)
T ss_dssp             TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CC--CGGGEEEEEEC-----CEEEEEEEEECCHHHHHHHHHHHHTST
T ss_pred             CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeee--eeeeeEEEEeccCC-CEEEEEEEEEEeeCCccchhhhcccCCc
Confidence            356999999999999 9999999999999997 46  44444444443322 345778998886543310      0111


Q ss_pred             CCCCceEEEEEEcH
Q psy11834        180 GVDEELIEVVEMGL  193 (230)
Q Consensus       180 ~~~~E~~~v~wv~~  193 (230)
                      ...-|....+.+|+
T Consensus       130 d~G~EvlGlvRVPl  143 (214)
T 3kvh_A          130 DHGLEVLGLVRVPL  143 (214)
T ss_dssp             TBTTTEEEEEEECC
T ss_pred             ccCceecceEEeee
Confidence            23567888888874

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.68  E-value=7.2e-08  Score=86.63  Aligned_cols=91  Identities=13%  Similarity=0.128  Sum_probs=58.3

Q ss_pred             EEeeeeecCCCCCHHHHHHHHHHhhh-CCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEE
Q psy11834        111 LEFCAGIVDKNKSLAEIAREEVLEEC-GYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVV  189 (230)
Q Consensus       111 ~elPgG~VE~GEs~~eAA~REl~EET-Gl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~  189 (230)
                      |.||||.++.+++  ++|+||++||| |+.+  . +..+...+..+.. .....+|.|...+.      .     ..++.
T Consensus       204 W~LPG~~~~~~~~--~~a~RE~~EEttGl~v--~-~~~L~~v~~~~~~-~~~~i~f~~~~~~g------~-----~~e~~  266 (321)
T 3rh7_A          204 LSLPNCTVEGGDP--ARTLAAYLEQLTGLNV--T-IGFLYSVYEDKSD-GRQNIVYHALASDG------A-----PRQGR  266 (321)
T ss_dssp             EBCCEEEESSSCH--HHHHHHHHHHHHSSCE--E-EEEEEEEEECTTT-CCEEEEEEEEECSS------C-----CSSSE
T ss_pred             ccCCcccCCCChh--HHHHHHHHHHhcCCEE--e-eceEEEEEEcCCC-ceEEEEEEEEeCCC------C-----eeeeE
Confidence            8899987765554  59999999997 9999  3 4445555554443 23334667765321      1     24689


Q ss_pred             EEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q psy11834        190 EMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA  223 (230)
Q Consensus       190 wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~  223 (230)
                      |++++++..+    ++.. +..-..|.+|+..+.
T Consensus       267 ~f~~~elp~~----~~~~-~~~~~~L~~y~~e~~  295 (321)
T 3rh7_A          267 FLRPAELAAA----KFSS-SATADIINRFVLESS  295 (321)
T ss_dssp             EECHHHHTTC----EESS-HHHHHHHHHHHHTTS
T ss_pred             EECHHHCCCc----ccCC-HHHHHHHHHHHHHhh
Confidence            9999998864    3444 344555666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d1g0sa_	209	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escheri	1e-10
d1viua_	189	d.113.1.1 (A:) ADP-ribose pyrophosphatase homologu	1e-10
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	3e-08
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-07
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	8e-06
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	3e-05
d1mqea_	202	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobac	2e-04
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-04
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	6e-04
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	0.002
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	0.004

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFV 167
              LE  AG++++ +S+ ++AR E +EE G  V  ++ + + +F +  G   +R ++   
Sbjct: 89  PWLLEMVAGMIEEGESVEDVARREAIEEAGLIV--KRTKPVLSFLASPGGTSERSSIMVG 146

Query: 168 EVTDDMKVNSGGGVDE-ELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAG 224
           EV         G  DE E I V  +  E+A +++ + ++ + +  + A+ W       
Sbjct: 147 EVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN-AASVIALQWLQLHHQA 203

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]} Length = 189

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 4/111 (3%)

Query: 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFV 167
           G  +E CAG++D ++      R+E +EE GY+V   ++ K+       G   +    F  
Sbjct: 76  GQLIESCAGLLDNDEPE-VCIRKEAIEETGYEVG--EVRKLFELYMSPGGVTELIHFFIA 132

Query: 168 EVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWF 218
           E +D+ + N+GGGV++E IEV+E+   +A E +   E+R     +  +++ 
Sbjct: 133 EYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRD-GKTVLLLNYL 182

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 49.3 bits (117), Expect = 3e-08
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
           PA     LE  AG+++  +   E AR E+ E+ G          +    S   S G    
Sbjct: 45  PAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSG------DLTYLFSYFVSPGFTDE 98

Query: 164 LFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLA 220
              V + +++K       ++E IEVV M  EEA E   + EV   +  L  + ++ A
Sbjct: 99  KTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHA 155

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD 171
              +G V+  ++  + A  E  EE G  V   K       R   G     + ++  E   
Sbjct: 45  HIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGVL-ILRHVWLAEPEP 103

Query: 172 DMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
              +       +E+ E   +  E+  +  A  ++R     LF
Sbjct: 104 GQTLAPA--FTDEIAEASFVSREDFAQLYAAGQIRMYQTKLF 143

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 41.9 bits (98), Expect = 8e-06
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD 171
            F  G  +  +SL E A  EV EE G     E L  +   R       +R+  +F+    
Sbjct: 27  VFPKGHPEPGESLEEAAVREVWEETGVRA--EVLLPLYPTRYVNPKGVEREVHWFL---- 80

Query: 172 DMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
            M+      ++E +        EEAR  LA  E  
Sbjct: 81  -MRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDL 114

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 8/112 (7%)

Query: 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVE 168
             L F  G++D  +S+ E A  E+ EE G+      L  ++           +  +   +
Sbjct: 74  YELGFSKGLIDPGESVYEAANRELKEEVGF--GANDLTFLKKLSMAPSYFSSKMNIVVAQ 131

Query: 169 VTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV---RSPSGFLFAMHW 217
                 +    G + E +  V   L    + L   +    R+ S       W
Sbjct: 132 DLYPESLE---GDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREW 180

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 7/119 (5%)

Query: 108 GVTLEFCAGIVDKNKSLAEIA-REEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFF 166
               E  AG++D       +    E+ EE G        + +    +  G + +   ++ 
Sbjct: 64  RRLWELPAGLLDVAGEPPHLTAARELREEVGLQA--STWQVLVDLDTAPGFSDESVRVYL 121

Query: 167 VEVTDDMKVNSGGGVD-EELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAG 224
              T   +V        E  + +    + EA   + + E+ + S  +  +    A   G
Sbjct: 122 A--TGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIVN-SIAIAGVLAVHAVTTG 177

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 8/112 (7%)

Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT--LFFVEV 169
               G V+  +   E A     EE G +     + +         +    +T   +  EV
Sbjct: 44  TPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEV 103

Query: 170 TDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAA 221
            D         +  E      +GLEEA +     E+++    L   H FL +
Sbjct: 104 KDYDVEIR---LSHEHQAYRWLGLEEACQLAQFKEMKA---ALQEGHQFLCS 149

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.7 bits (84), Expect = 6e-04
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 11/114 (9%)

Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDR--QTLFFVEV 169
               G ++  ++  E    EVLEE G  V +                        +F   
Sbjct: 43  FLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVA 102

Query: 170 TDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA 223
               +++      E    +  +  EEA   L +   R      +A+  +LAA +
Sbjct: 103 NTWRQLSEP---LERTNTLHWVAPEEAVRLLKRGSHR------WAVEKWLAAAS 147

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD 171
            F  G +DK++S  + A  EV EE G+D             +  G       +  + +  
Sbjct: 30  GFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDT 89

Query: 172 DMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA 223
             +        +E+ ++    L +   +         + F   + +    K 
Sbjct: 90  RFESR----TRKEISKIEWHNLMDLPTFKKNKPQTMKNKFYMVIPFLAPLKK 137

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 5/93 (5%)

Query: 113 FCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDD 172
              G V   ++  E  R E  EE   ++       + +F     +      ++ +     
Sbjct: 61  SVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSFMCVYELRSDAT 120

Query: 173 MKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV 205
              N       ++     +  E     +A  E 
Sbjct: 121 PIFN-----PNDISGGEWLTPEHLLARIAAGEA 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	100.0
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	100.0
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	100.0
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.98
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.96
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.84
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.8
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.78
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.76
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.75
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.75
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.72
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.71
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.71
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.69
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.69
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.68
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.67
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.67
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.67
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.64
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.64
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.62
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.61
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.54
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.5
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.22
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.03
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.02
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	98.87

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.2e-34  Score=240.49  Aligned_cols=184  Identities=16%  Similarity=0.260  Sum_probs=149.7

Q ss_pred             cceEeEEEEeeecCeeeEEEEEEee---cCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCcccccee
Q psy11834          3 KITEAQIIETQSSQFIQPYSVKFVQ---EALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQ   79 (230)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q   79 (230)
                      +++.++...++++ ||++.+++++.   ||.   +.....|+++.++++|+|++++..+++++|+|             |
T Consensus        15 dv~il~~~~vy~G-~~~v~~~~~~~~~~dG~---~s~~~~rev~~~~~~v~vl~~~~~~~~vlLvr-------------Q   77 (209)
T d1g0sa_          15 DVEIIARETLYRG-FFSLDLYRFRHRLFNGQ---MSHEVRREIFERGHAAVLLPFDPVRDEVVLIE-------------Q   77 (209)
T ss_dssp             GEEEEEEEEEEES-SSEEEEEEEEEBCTTSC---BCCCEEEEEEECCCEEEEEEEETTTTEEEEEE-------------E
T ss_pred             ceEEEEEEEEEcC-eEEEEEEEEEEECCCCC---cccEEEEEEEecCCEEEEEEEEecCCeEEEEE-------------E
Confidence            3566677777776 88887776653   554   32233458999999999999997789999999             9


Q ss_pred             cccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccC
Q psy11834         80 VLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAG  159 (230)
Q Consensus        80 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~  159 (230)
                      ||++++....                 .+|.||+|||.+|+|||+++||+|||+|||||.+  ..+..++.++++++.++
T Consensus        78 ~R~~~~~~~~-----------------~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~--~~l~~l~~~~~spg~~~  138 (209)
T d1g0sa_          78 IRIAAYDTSE-----------------TPWLLEMVAGMIEEGESVEDVARREAIEEAGLIV--KRTKPVLSFLASPGGTS  138 (209)
T ss_dssp             ECGGGGGGSS-----------------CSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCC--CCEEEEEEEESCTTTBC
T ss_pred             EeccccccCC-----------------CceEEeeceeecCCCcCHHHHHHHHHHhhhcccc--cceeeccccccCCcccC
Confidence            9999864321                 5789999999999999999999999999999999  89999999999999999


Q ss_pred             eEEEEEEEEEcCcccccC-CCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q psy11834        160 DRQTLFFVEVTDDMKVNS-GGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA  223 (230)
Q Consensus       160 ~~~~~y~a~~~~~~~~~~-~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~  223 (230)
                      +.+++|+|.++.....+. +..+++|.++++|++++|+.+++.+|+|.+ +.|++|++|+..+++
T Consensus       139 e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~~g~I~d-a~ti~al~~~~l~~~  202 (209)
T d1g0sa_         139 ERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN-AASVIALQWLQLHHQ  202 (209)
T ss_dssp             CEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTSSCB-HHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHHHcCCCCc-HHHHHHHHHHHHhHH
Confidence            999999998654332221 123678899999999999999999999997 778999999988764

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-32  Score=227.77  Aligned_cols=182  Identities=22%  Similarity=0.404  Sum_probs=144.0

Q ss_pred             cceEeEEEEeeecCeeeEEEEEEee---cCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCcccccee
Q psy11834          3 KITEAQIIETQSSQFIQPYSVKFVQ---EALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQ   79 (230)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q   79 (230)
                      ++|-++...+. +.|+++.+++++.   ||....+    .|+++.++++|+|+++++.+++++|+|             |
T Consensus         2 ~~~i~~~~~~~-~g~~~~~~~~~~~~~~dG~~~~~----~rev~~~~~aV~Vl~~~~~~~~vllvr-------------Q   63 (189)
T d1viua_           2 QITLIKDKILS-DNYFTLHNITYDLTRKDGEVIRH----KREVYDRGNGATILLYNTKKKTVVLIR-------------Q   63 (189)
T ss_dssp             CEEEEEEEEEE-CSSSEEEEEEEEECCSSSCCEEE----EEEEEECCCEEEEEEEETTTTEEEEEE-------------E
T ss_pred             ceEEEEEEEEE-cCcEEEEEEEEEEECCCCCEEEE----EEEEEecCCEEEEEEEEcCCCEEEEEE-------------e
Confidence            34544444444 5599998877653   6653332    448899999999999998889999999             9


Q ss_pred             cccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccC
Q psy11834         80 VLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAG  159 (230)
Q Consensus        80 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~  159 (230)
                      ||++++.++.                ...++||+|||.+| ||++++||+|||+||||+.+  ..+.+++.+++++|.++
T Consensus        64 ~R~~v~~~~~----------------~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~--~~~~~lg~~~~spG~~~  124 (189)
T d1viua_          64 FRVATWVNGN----------------ESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEV--GEVRKLFELYMSPGGVT  124 (189)
T ss_dssp             ECHHHHTTTC----------------SSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCC--CCCEEEEEEESCTTTBC
T ss_pred             eccceeeccC----------------CCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcc--eEEEEcceeecCccccC
Confidence            9999865422                25789999999998 67789999999999999999  89999999999999999


Q ss_pred             eEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q psy11834        160 DRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAK  222 (230)
Q Consensus       160 ~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~  222 (230)
                      +.+|+|+|........+.+..+++|.++++|+|++|+.+++.+|++++ +.|+.|++|+..++
T Consensus       125 e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i~~g~i~d-a~ti~al~~l~~~~  186 (189)
T d1viua_         125 ELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRD-GKTVLLLNYLQTSH  186 (189)
T ss_dssp             CEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHHHHTSCCB-HHHHHHHHHHHTTT
T ss_pred             ceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHHHcCCCCc-HHHHHHHHHHHHhc
Confidence            999999998765544444455788999999999999999999999997 78899999886553

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.4e-32  Score=231.23  Aligned_cols=175  Identities=13%  Similarity=0.069  Sum_probs=144.9

Q ss_pred             eEeEEEEeeecCeeeEEEEEEe-ecCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccc
Q psy11834          5 TEAQIIETQSSQFIQPYSVKFV-QEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLS   83 (230)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~   83 (230)
                      +.++...+++++|+++++.++. +||...+|      +++.++++|+|++++ .+++|||+|             |||++
T Consensus         2 ~~l~s~~v~~~~~~~v~~d~v~~pdG~~~~~------~~v~~~~~V~vl~~~-~~~~ilLvr-------------q~R~~   61 (202)
T d1mqea_           2 ETISSETLHTGAIFALRRDQVRMPGGGIVTR------EVVEHFGAVAIVAMD-DNGNIPMVY-------------QYRHT   61 (202)
T ss_dssp             CEEEEEEEEECSSEEEEEEEEC-----CEEE------EEEEECCEEEEEECC-TTSEEEEEE-------------EEETT
T ss_pred             eEccEEEEEECCEEEEEEEEEECCCCCEEEE------EEEEcCCeEEEEEEC-CCCEEEEEE-------------ecccc
Confidence            4567888899999999999998 69998999      889999999999988 488999999             99998


Q ss_pred             eeccCCcccccCCccccccCCCCCCcEEEeeeeecC-CCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEE
Q psy11834         84 VYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVD-KNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ  162 (230)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE-~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~  162 (230)
                      .                      +.++|+||||++| +||++++||+|||+|||||.+  ..+..++.++++++.+++.+
T Consensus        62 ~----------------------~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~--~~~~~l~~~~~~~g~~~~~~  117 (202)
T d1mqea_          62 Y----------------------GRRLWELPAGLLDVAGEPPHLTAARELREEVGLQA--STWQVLVDLDTAPGFSDESV  117 (202)
T ss_dssp             T----------------------TEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEE--EEEEEEEEECSCTTTBCCCE
T ss_pred             c----------------------CceEEeccccccccCCCCHHHHHHHHHhhcccccc--ccceEeeeeeccCccCCcEE
Confidence            7                      6789999999999 799999999999999999999  89999999999999999999


Q ss_pred             EEEEEEEcCcccccCCC-CCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCc
Q psy11834        163 TLFFVEVTDDMKVNSGG-GVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQY  226 (230)
Q Consensus       163 ~~y~a~~~~~~~~~~~~-~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  226 (230)
                      ++|++.....  .+... .+++|.+++.|+|++|+.+++.+|+|.+ +.|+.|++|+.+.++|-+
T Consensus       118 ~~fla~~~~~--~~~~~~~~eee~i~v~w~~~~e~~~~i~~G~I~d-~~ti~al~~~~~~~~~~~  179 (202)
T d1mqea_         118 RVYLATGLRE--VGRPEAHHEEADMTMGWYPIAEAARRVLRGEIVN-SIAIAGVLAVHAVTTGFA  179 (202)
T ss_dssp             EEEEEEEEEE--CCC----------CEEEEEHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHTTSC
T ss_pred             EEEEEEeccc--cCCCCCCCccceEEEEEEEHHHHHHHHHcCCCCc-HHHHHHHHHHHHHhcCCC
Confidence            9999985322  22222 2556788999999999999999999998 788999998888777643

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=1.2e-31  Score=222.62  Aligned_cols=171  Identities=16%  Similarity=0.172  Sum_probs=143.9

Q ss_pred             cceEeEEEEeeecCeeeEEEEEEe-ecCeEeecccccceeeEeecC--eEEEEEEEcCCCEEEEEEecCCcCCcccccee
Q psy11834          3 KITEAQIIETQSSQFIQPYSVKFV-QEALIKENQYCHPQFLITQHK--DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQ   79 (230)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~--~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q   79 (230)
                      +.+-++...+++++||++++.+++ +||....|      +++..+.  +|.|++.  .+++++|+|             |
T Consensus         8 k~~il~~~~v~~~~~f~v~~~~v~~p~G~~~~~------~~~~~~~~~~v~vi~~--~~~~vlLvr-------------q   66 (186)
T d1vhza_           8 KPTILNVETVARSRLFTVESVDLEFSNGVRRVY------ERMRPTNREAVMIVPI--VDDHLILIR-------------E   66 (186)
T ss_dssp             CCEEEEEEEEEECSSCEEEEEEEECTTSCEEEE------EEECCCCCCEEEEEEE--ETTEEEEEE-------------E
T ss_pred             CCEEeeeEEEEeCCEEEEEEEEEEcCCCCEEEE------EEEEeCCCcEEEEEEc--cCCEEEEEE-------------e
Confidence            345567777899999999999998 69988888      7776443  4444444  478999999             9


Q ss_pred             cccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccC
Q psy11834         80 VLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAG  159 (230)
Q Consensus        80 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~  159 (230)
                      ||++.                      ..++|+||||++|+|||+++||+||++||||+.+  ..+.+++.++++++.++
T Consensus        67 ~R~~~----------------------~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~--~~~~~l~~~~~~~g~~~  122 (186)
T d1vhza_          67 YAVGT----------------------ESYELGFSKGLIDPGESVYEAANRELKEEVGFGA--NDLTFLKKLSMAPSYFS  122 (186)
T ss_dssp             EETTT----------------------TEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEE--EEEEEEEEEECCTTTCC
T ss_pred             eecCC----------------------CceEeecccccCCCCcCHHHHHHHHHHHHhcccc--ccceecceeeccccccc
Confidence            99987                      6789999999999999999999999999999999  89999999999999999


Q ss_pred             eEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q psy11834        160 DRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAK  222 (230)
Q Consensus       160 ~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~  222 (230)
                      +.+++|++.....   .....+++|.+++.|+|++++.+++.+|++.+ +.++.|++|+....
T Consensus       123 ~~~~~~~a~~~~~---~~~~~de~E~~~~~~~~~~e~~~~i~~g~i~d-a~ti~al~~~~~~L  181 (186)
T d1vhza_         123 SKMNIVVAQDLYP---ESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNE-ARNVSALFLVREWL  181 (186)
T ss_dssp             CEEEEEEEEEEEE---CCCCCCCSSCCCEEEEEGGGGGGGGGCTTTCB-HHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEeccc---ccCCCCCCcEEEEEEEeHHHHHHHHHcCCCCh-HHHHHHHHHHHHHH
Confidence            9999999974322   23345788999999999999999999999987 67888887765543

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=3.7e-29  Score=202.44  Aligned_cols=153  Identities=22%  Similarity=0.251  Sum_probs=122.8

Q ss_pred             EEeeecCeeeEEEEEEeecCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCC
Q psy11834         10 IETQSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSI   89 (230)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~   89 (230)
                      +.++.++|+++        +.++.|      +++.++++|+|++++  ++++||+|             |||++.     
T Consensus         2 ~~~y~g~~~~~--------~~~~~~------~~v~~~~aV~vl~~~--~~~vlLv~-------------q~R~~~-----   47 (158)
T d1v8ya_           2 TYLYRGRILNL--------ALEGRY------EIVEHKPAVAVIALR--EGRMLFVR-------------QMRPAV-----   47 (158)
T ss_dssp             EEEEECSSEEE--------EEETTE------EEEEECCEEEEEEEE--TTEEEEEE-------------CCBTTT-----
T ss_pred             eEEEeccEEee--------EEeeeE------EEEecCCEEEEEEEE--CCEEEEEE-------------eeecCC-----
Confidence            34577777754        344568      889999999999986  68999999             999987     


Q ss_pred             cccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEE
Q psy11834         90 PEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEV  169 (230)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~  169 (230)
                                       +.+.||||||++|+||++++||+||++||||+.+   ++..++.++++++.+++.+++|++..
T Consensus        48 -----------------~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~---~~~~l~~~~~~~g~~~~~~~~f~a~~  107 (158)
T d1v8ya_          48 -----------------GLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSG---DLTYLFSYFVSPGFTDEKTHVFLAEN  107 (158)
T ss_dssp             -----------------TBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEE---EEEEEEEEESCTTTBCCEEEEEEEEE
T ss_pred             -----------------CCceEecchhhccccCCHHHHHHHHHHhhcCCcc---eeeeecceecCCCcceEEEEEEEEcc
Confidence                             5789999999999999999999999999999977   47788899999999999999999985


Q ss_pred             cCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHH
Q psy11834        170 TDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFL  219 (230)
Q Consensus       170 ~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~  219 (230)
                      ...   .....+++|.+++.|++++|+.+++.+|++.++.+.+.+++|+.
T Consensus       108 ~~~---~~~~~d~~E~~ev~w~~~~e~~~~i~~g~i~~~~t~~~~ll~~~  154 (158)
T d1v8ya_         108 LKE---VEAHPDEDEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYH  154 (158)
T ss_dssp             EEE---CC--------CEEEEECHHHHHHHHHTTSCCBCHHHHHHHHHHH
T ss_pred             ccc---cccCCCCCeeEEEEEEEHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            322   23345678899999999999999999999987666677776664

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.84  E-value=6.5e-20  Score=145.15  Aligned_cols=140  Identities=14%  Similarity=0.091  Sum_probs=98.0

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      .+.++++++++ .++++||++             +.+.+...                   .....|+||||++|+|||+
T Consensus        11 ~~~a~~~vi~~-~~g~iLl~~-------------r~~~~~~~-------------------~~~g~W~~PgG~ve~gE~~   57 (158)
T d1sjya_          11 ELRAAGVVLLN-ERGDILLVQ-------------EKGIPGHP-------------------EKAGLWHIPSGAVEDGENP   57 (158)
T ss_dssp             CEEEEEEEEBC-TTCCEEEEE-------------ESCC-----------------------CCCCCEECSEEECCTTSCH
T ss_pred             ceeEEEEEEEe-CCCEEEEEE-------------EecCCCCC-------------------CCCCcEECCceecCCCCCH
Confidence            34678888887 478999999             65543210                   1345799999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEEEEc-CCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcC
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQTFRS-GVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~-~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~  203 (230)
                      .+||+||++||||+.+  ..+..++.+.. .+.......++|++.......  .....++|+.++.|++++++.+++..+
T Consensus        58 ~~aa~RE~~EEtGl~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~w~~~~el~~l~~~~  133 (158)
T d1sjya_          58 QDAAVREACEETGLRV--RPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQT--LAPAFTDEIAEASFVSREDFAQLYAAG  133 (158)
T ss_dssp             HHHHHHHHHHHHSCCE--EEEEEEEEEEEECTTSCEEEEEEEEEEECSSCC--CCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCccc--eeeEEEEEEEEECCCCCEEEEEEEEEEEcCCcc--cCCCCCcceEEEEEEEHHHHhhhhhCC
Confidence            9999999999999999  66666665432 233344456777777653321  112245799999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhh
Q psy11834        204 EVRSPSGFLFAMHWFLAAK  222 (230)
Q Consensus       204 ~~~~~~~~~~a~~~~~~~~  222 (230)
                      .++.. .+..++.-++.++
T Consensus       134 ~~~~~-~~~~~~~d~~~~~  151 (158)
T d1sjya_         134 QIRMY-QTKLFYADALREK  151 (158)
T ss_dssp             CBSCT-HHHHHHHHHHHHH
T ss_pred             cchhH-hHHHHHHHHHHhC
Confidence            98763 3444444444443

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.80  E-value=1.1e-18  Score=136.10  Aligned_cols=115  Identities=17%  Similarity=0.214  Sum_probs=80.2

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      +|++++.+  ++++||+|             +++.+                       ....|++|||++++|||+.+|
T Consensus         5 ~va~ii~~--~~k~Llv~-------------r~~~~-----------------------~~~~w~~PgG~ve~gEt~~~a   46 (146)
T d2b0va1           5 TVAAVIEQ--DDKYLLVE-------------EIPRG-----------------------TAIKLNQPAGHLEPGESIIQA   46 (146)
T ss_dssp             EEEEECEE--TTEEEEEE-------------ECSSS-----------------------SCCEEECSEEECCTTSCHHHH
T ss_pred             EEEEEEEe--CCEEEEEE-------------EecCC-----------------------CCCEEECCeeeECCCCCHHHH
Confidence            45556554  79999999             76654                       246799999999999999999


Q ss_pred             HHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcC
Q psy11834        128 AREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       128 A~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~  203 (230)
                      |+||++||||+.+....+..+..+...........++|++.....   ......+.|+.++.|++++++.++....
T Consensus        47 a~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~E~~~~~W~~~~el~~~~~~~  119 (146)
T d2b0va1          47 CSREVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSF---DPDRKLDTGIVRAAWFSIDEIRAKQAMH  119 (146)
T ss_dssp             HHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEE---CTTSCCCTTEEEEEEEEHHHHHHTGGGB
T ss_pred             HHHHHHHhheeecccceEEEEEEEecCCCCeEEEEEEEEEEeecC---CCCCCCCcceeEEEEeeHHHHhhCcccc
Confidence            999999999999943333333334433333334455566665432   1223356789999999999998875543

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.5e-18  Score=138.91  Aligned_cols=130  Identities=22%  Similarity=0.218  Sum_probs=93.3

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCCC
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNKS  123 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GEs  123 (230)
                      .|.+|+|+++| .++++||.|               |....               ..    .+..|++| ||++++|||
T Consensus        29 ~h~~v~v~v~~-~~g~vLl~r---------------R~~~~---------------~~----~pg~w~~~~GG~ie~gEs   73 (161)
T d2fkba1          29 RHRATYIVVHD-GMGKILVQR---------------RTETK---------------DF----LPGMLDATAGGVVQADEQ   73 (161)
T ss_dssp             CEEEEEEEEEC-SSSCEEEEE---------------ECSSC---------------SS----STTCEESSBCCBCBTTCC
T ss_pred             cEeEEEEEEEe-CCCCEEEEE---------------ecCcc---------------cc----ccccccccccccccccCc
Confidence            36799999988 478898887               33210               01    24568776 899999999


Q ss_pred             HHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcC
Q psy11834        124 LAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       124 ~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~  203 (230)
                      +++||+||++||||+..  ..+..++.+...........++|.+...     .+...+++|+.++.|++++|+.+++.+ 
T Consensus        74 ~~~aa~REl~EE~Gi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ev~~~~w~~~~el~~~~~~-  145 (161)
T d2fkba1          74 LLESARREAEEELGIAG--VPFAEHGQFYFEDKNCRVWGALFSCVSH-----GPFALQEDEVSEVCWLTPEEITARCDE-  145 (161)
T ss_dssp             HHHHHHHHHHHHHCCBS--CCCEEEEEEEEEETTEEEEEEEEEEECC-----CCCCCCTTTEEEEEEECHHHHHTTGGG-
T ss_pred             HHHHHHHHHHHHhCCcc--ceeEEEEEEEeecCCcEEEEEEEEEEEC-----CCCcCChhHeeEEEEEeHHHHhhhhhc-
Confidence            99999999999999988  7788888766554445555666666532     122346789999999999999988764 


Q ss_pred             CCCChHHHHHHHH-HHHH
Q psy11834        204 EVRSPSGFLFAMH-WFLA  220 (230)
Q Consensus       204 ~~~~~~~~~~a~~-~~~~  220 (230)
                       +.  +.++-|+. |+.+
T Consensus       146 -~~--P~~~~al~~~~~r  160 (161)
T d2fkba1         146 -FT--PDSLKALALWMKR  160 (161)
T ss_dssp             -BC--HHHHHHHHHHHHH
T ss_pred             -cC--CcHHHHHHHHHhc
Confidence             32  34566774 4443

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=6.8e-19  Score=136.61  Aligned_cols=87  Identities=20%  Similarity=0.157  Sum_probs=65.8

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV  188 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v  188 (230)
                      ..|++|||++|+|||+++||+||++||||+.+  .....++.....  ..+...++|++.....    ....++.|+.++
T Consensus        27 g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~--~~~~~~~~~~~~--~~~~~~~~f~~~~~~~----~~~~~~~E~~~~   98 (131)
T d1vk6a2          27 GVHTVLAGFVEVGETLEQAVAREVMEESGIKV--KNLRYVTSQPWP--FPQSLMTAFMAEYDSG----DIVIDPKELLEA   98 (131)
T ss_dssp             SCCBCEEEECCTTCCHHHHHHHHHHHHHCCEE--EEEEEEEEEEEE--TTEEEEEEEEEEEEEC----CCCCCTTTEEEE
T ss_pred             CCEecccCCCcCCCcHHHHHHHHHHHHhCCcc--cceeEEEEeccC--cCceEEEEEEEEEcCC----cccCCCccEEEE
Confidence            35789999999999999999999999999999  666666654443  2334566777775422    223467889999


Q ss_pred             EEEcHHHHHHHhhcC
Q psy11834        189 VEMGLEEAREYLAQD  203 (230)
Q Consensus       189 ~wv~~eE~~~~~~~~  203 (230)
                      .|++++++..+...+
T Consensus        99 ~W~~~~el~~l~~~~  113 (131)
T d1vk6a2          99 NWYRYDDLPLLPPPG  113 (131)
T ss_dssp             EEEETTSCCSCCCTT
T ss_pred             EEEcHHHHhhCCCCh
Confidence            999999987664443

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.75  E-value=4.9e-18  Score=135.93  Aligned_cols=123  Identities=11%  Similarity=0.084  Sum_probs=87.9

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCCC
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNKS  123 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GEs  123 (230)
                      .+.+|+++++| .++++||.|               |....               ..|    +..|.+| ||++++|||
T Consensus        27 ~~~~v~~~v~~-~~g~~Ll~r---------------R~~~k---------------~~~----pg~w~~~~GG~ve~gEs   71 (162)
T d2o5fa1          27 RVRVVNAFLRN-SQGQLWIPR---------------RSPSK---------------SLF----PNALDVSVGGAVQSGET   71 (162)
T ss_dssp             GSEEEEEEEEC-TTSCEEEEE---------------C--------------------------CCSBCCSEEEECBTTCC
T ss_pred             eEEEEEEEEEc-CCCCEEEEE---------------eccCc---------------ccc----ccccccccCCcccCCCC
Confidence            35689999988 478888877               43220               112    3445565 999999999


Q ss_pred             HHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcC
Q psy11834        124 LAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQD  203 (230)
Q Consensus       124 ~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~  203 (230)
                      +.+||.||++||||+++....+..+..+.+........+++|.+....     ....+++|+.++.|++++|+.+++..|
T Consensus        72 ~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Ev~~~~W~~~eel~~~~~~g  146 (162)
T d2o5fa1          72 YEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSFMCVYELRSDA-----TPIFNPNDISGGEWLTPEHLLARIAAG  146 (162)
T ss_dssp             HHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSSCSSEEEEEEEECSS-----CCCCCTTTCSEEEEECHHHHHHHHHHT
T ss_pred             hhhhhhhhhhheeCcceeeEEEEEEEEeccccccceEEEEEEEEecCC-----CccCChhHeeEEEEeeHHHHHHHHHCC
Confidence            999999999999999995455555555544444455566777766331     223456788899999999999999999


Q ss_pred             CCCC
Q psy11834        204 EVRS  207 (230)
Q Consensus       204 ~~~~  207 (230)
                      ++..
T Consensus       147 e~~~  150 (162)
T d2o5fa1         147 EAAK  150 (162)
T ss_dssp             CCBC
T ss_pred             CCCc
Confidence            9875

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=1e-17  Score=128.63  Aligned_cols=84  Identities=25%  Similarity=0.212  Sum_probs=62.0

Q ss_pred             EEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEE-EcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834        110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF-RSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV  188 (230)
Q Consensus       110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~-~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v  188 (230)
                      .|++|||++|+|||+.+||+||++||||+.+  ..+..++.. +..+......+++|++.....      ...++|+.++
T Consensus        25 ~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~~~   96 (126)
T d1vcda1          25 FWVFPKGHPEPGESLEEAAVREVWEETGVRA--EVLLPLYPTRYVNPKGVEREVHWFLMRGEGA------PRLEEGMTGA   96 (126)
T ss_dssp             CEECCEECCCTTCCHHHHHHHHHHHHHCCEE--EEEEEEEEEEEECTTSCEEEEEEEEEEEESC------CCCCTTCCEE
T ss_pred             CEECCccccCCCCCHHHHHHHHHHHHcCCee--EEEEEEeeeeeccCCCeEEEEEEEEEEEcCC------CCCCccceEE
Confidence            4889999999999999999999999999999  666666543 333333334456666664321      1234577789


Q ss_pred             EEEcHHHHHHHhh
Q psy11834        189 VEMGLEEAREYLA  201 (230)
Q Consensus       189 ~wv~~eE~~~~~~  201 (230)
                      .|++++++.+++.
T Consensus        97 ~W~~~~e~~~~~~  109 (126)
T d1vcda1          97 GWFSPEEARALLA  109 (126)
T ss_dssp             EEECHHHHHHHBC
T ss_pred             EEEEHHHHhhccC
Confidence            9999999998864

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.72  E-value=1.8e-18  Score=136.72  Aligned_cols=117  Identities=16%  Similarity=0.142  Sum_probs=71.0

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      +.+++++++.+.+++||+|             +++.                         +..|.||||++++|||+.+
T Consensus         3 ~v~Gaii~~~~~~kvLLvk-------------~~~~-------------------------~~~W~lPgG~ie~gEs~~~   44 (151)
T d2a6ta2           3 PVRGAIMLDMSMQQCVLVK-------------GWKA-------------------------SSGWGFPKGKIDKDESDVD   44 (151)
T ss_dssp             CEEEEEEBCSSSSEEEEEE-------------ESST-------------------------TCCCBCSEEECCTTCCHHH
T ss_pred             cEEEEEEEECCCCEEEEEE-------------EeCC-------------------------CCCEECCcccccCCCCHHH
Confidence            4567788886678999999             6542                         2347899999999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCC
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV  205 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~  205 (230)
                      ||+||++||||+++.  .+.....+.... ......++|++...... .........|+.++.|++++++..+..+...
T Consensus        45 aa~RE~~EEtGi~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~Ei~~~~W~~~~el~~~~~~~~~  119 (151)
T d2a6ta2          45 CAIREVYEETGFDCS--SRINPNEFIDMT-IRGQNVRLYIIPGISLD-TRFESRTRKEISKIEWHNLMDLPTFKKNKPQ  119 (151)
T ss_dssp             HHHHHHHHHHCCCCT--TTCCTTCEEEEE-ETTEEEEEEEECCCCTT-CCCC------EEEEEEEEGGGSTTCC-----
T ss_pred             HHHHHHHHHhCCCce--eeeecceEEeec-ccCceEEEEEEEEeccC-CcccccCCCccceEEEEEHHHhhhhhhcccc
Confidence            999999999999884  222211111111 12233444544422111 1111225678999999999999887665443

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=4.5e-17  Score=129.75  Aligned_cols=118  Identities=14%  Similarity=0.087  Sum_probs=79.7

Q ss_pred             cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEe-eeeecCCCCCH
Q psy11834         46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEF-CAGIVDKNKSL  124 (230)
Q Consensus        46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el-PgG~VE~GEs~  124 (230)
                      |.+++|+++| .++++||.|               |....               ..    .+..|.+ |||++++|||+
T Consensus         2 Hra~~v~i~n-~~g~vLl~k---------------Rs~~k---------------~~----~pg~w~~~pgG~ve~gEt~   46 (153)
T d1hzta_           2 HLAFSSWLFN-AKGQLLVTR---------------RALSK---------------KA----WPGVWTNSVCGHPQLGESN   46 (153)
T ss_dssp             EECEEEEEEC-TTCCEEEEE---------------ECTTC---------------SS----STTCEEESEEECCCTTCCH
T ss_pred             ceEEEEEEEE-CCCEEEEEE---------------eCCCC---------------CC----CCCceecccCceeecCCcH
Confidence            5689999998 478899888               32210               01    2344555 99999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEE---EEEcCC-C--ccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQ---TFRSGV-G--SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE  198 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~---~~~~~~-~--~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~  198 (230)
                      .+||+||+.||||+.+  ..+..+.   .+.... .  .....+++|.+..+     .....+++|+.++.|++++++.+
T Consensus        47 ~eaa~RE~~EE~Gi~~--~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Ev~~~~W~~~~el~~  119 (153)
T d1hzta_          47 EDAVIRRCRYELGVEI--TPPESIYPDFRYRATDPSGIVENEVCPVFAARTT-----SALQINDDEVMDYQWCDLADVLH  119 (153)
T ss_dssp             HHHHHHHHHHHHCCCB--SCCEEEETTCEEEEECTTSCEEEEECCEEEEEBC-----SCCCCCTTTEEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHcCcee--ecccceeccccccccccccccceeEEEEEEEeeC-----CCccCChhheeEEEEeeHHHHHH
Confidence            9999999999999998  4444433   122211 1  12223345555432     12234567999999999999999


Q ss_pred             HhhcCCC
Q psy11834        199 YLAQDEV  205 (230)
Q Consensus       199 ~~~~~~~  205 (230)
                      +++...-
T Consensus       120 ~i~~~p~  126 (153)
T d1hzta_         120 GIDATPW  126 (153)
T ss_dssp             HHHHCGG
T ss_pred             HHHcCCc
Confidence            9887644

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.6e-17  Score=128.44  Aligned_cols=89  Identities=13%  Similarity=-0.012  Sum_probs=62.8

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV  188 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v  188 (230)
                      ..|++|||++++|||+.+||+||++||||+.+  .....++.+...........+.+++.....    .......|+.++
T Consensus        37 ~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~~  110 (135)
T d2fvva1          37 DRWIVPGGGMEPEEEPSVAAVREVCEEAGVKG--TLGRLVGIFENQERKHRTYVYVLIVTEVLE----DWEDSVNIGRKR  110 (135)
T ss_dssp             TSEECSEEECCTTCCHHHHHHHHHHHHHCEEE--EEEEEEEEEEETTTTEEEEEEEEEEEEECS----SCHHHHHHCCCE
T ss_pred             CcEECCccccCCCCCHHHHHHHHHHHHhCCcc--eeeEEEEEEeeccCCccEEEEEEEEEeecC----CCCCCCCceeEE
Confidence            35889999999999999999999999999998  666666555554433333333333332211    111134566789


Q ss_pred             EEEcHHHHHHHhhcC
Q psy11834        189 VEMGLEEAREYLAQD  203 (230)
Q Consensus       189 ~wv~~eE~~~~~~~~  203 (230)
                      .|++++++.+++...
T Consensus       111 ~W~~~~e~~~~l~~~  125 (135)
T d2fvva1         111 EWFKIEDAIKVLQYH  125 (135)
T ss_dssp             EEEEHHHHHHHHTTT
T ss_pred             EEEEHHHHHHHHhcC
Confidence            999999999998765

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.69  E-value=1.6e-16  Score=123.93  Aligned_cols=100  Identities=21%  Similarity=0.172  Sum_probs=64.5

Q ss_pred             EEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEE----EEcCCCccC--eEEEEEEEEEcCcccccCCCCCCC
Q psy11834        110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT----FRSGVGSAG--DRQTLFFVEVTDDMKVNSGGGVDE  183 (230)
Q Consensus       110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~----~~~~~~~s~--~~~~~y~a~~~~~~~~~~~~~~~~  183 (230)
                      .|+||||++|+|||+.+||+||++||||+.+  .....++.    ++.......  ...++|.+.....     .....+
T Consensus        41 ~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  113 (147)
T d2azwa1          41 AYFLPGGEIEGTETKEEAIHREVLEELGISV--EIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQ-----LSEPLE  113 (147)
T ss_dssp             CEECSEEECCTTCCHHHHHHHHHHHHHSEEE--EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEE-----CSSCC-
T ss_pred             eEECcEeEeCCCCCHHHHHHHHHHhhhceee--eeeeEEEEEEEEeeeccCCceEEEEEEEEEEEeccc-----cCCCCc
Confidence            5889999999999999999999999999998  44444433    222222221  2334555553221     112345


Q ss_pred             ceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q psy11834        184 ELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAK  222 (230)
Q Consensus       184 E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~  222 (230)
                      |+.++.|++++++.+++..+      ..-.++..|+++.
T Consensus       114 e~~~~~W~~~~e~~~~l~~~------~~r~~l~~~la~~  146 (147)
T d2azwa1         114 RTNTLHWVAPEEAVRLLKRG------SHRWAVEKWLAAA  146 (147)
T ss_dssp             CCSEEEEECHHHHHHHBSCH------HHHHHHHHHHHCC
T ss_pred             cceEEEEEEHHHHHHHcCCh------hHHHHHHHHHhcc
Confidence            67789999999999877532      3344555566554

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.2e-16  Score=126.50  Aligned_cols=111  Identities=10%  Similarity=0.042  Sum_probs=74.8

Q ss_pred             eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834         48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI  127 (230)
Q Consensus        48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA  127 (230)
                      +|.+++.+ .++++||+|             +.+.+                       .+..|.+|||++++|||+.+|
T Consensus        20 ~v~~vi~~-~~~~vLL~k-------------R~~~~-----------------------~~g~W~lPGG~ve~gEt~~~a   62 (160)
T d1ryaa_          20 SLDFIVEN-SRGEFLLGK-------------RTNRP-----------------------AQGYWFVPGGRVQKDETLEAA   62 (160)
T ss_dssp             EEEEEEEC-TTSCEEEEE-------------ECSSS-----------------------STTSEECCEEECCTTCCHHHH
T ss_pred             EEEEEEEe-CCCeEEEEE-------------eCCCC-----------------------CCCcEecccccccCCCcHHHH
Confidence            67777777 467899998             43322                       234588999999999999999


Q ss_pred             HHHHHHhhhCCccCCCceEEEEEE---EcCC-Cc---cCe-EEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834        128 AREEVLEECGYDVPVEKLEKIQTF---RSGV-GS---AGD-RQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       128 A~REl~EETGl~v~~~~l~~l~~~---~~~~-~~---s~~-~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      |+||++||||+.+....+..++.+   +... ..   ... ....|.+.....    .....++|+.++.|++++++.++
T Consensus        63 a~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~E~~e~~W~~~~el~~~  138 (160)
T d1ryaa_          63 FERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEE----ELLLPDEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             HHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBSSSCEEEEEEEEEEECCGG----GCCCCSSSEEEEEEECHHHHHHC
T ss_pred             HHHHHHHHhCceEeeeeeeEEEEEEEeccccccCCCcceEEEEEEEEEEecCC----CccCCCcceEEEEEEEHHHhhcC
Confidence            999999999999865666655532   2211 11   111 223344443221    12235678999999999999764

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.68  E-value=5.8e-17  Score=129.93  Aligned_cols=113  Identities=17%  Similarity=0.196  Sum_probs=77.4

Q ss_pred             CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834         47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE  126 (230)
Q Consensus        47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e  126 (230)
                      .+|+++++| .+++|||+|             +..                         .+..|.+|||+||+|||+++
T Consensus        15 ~~Vg~vI~n-~~~~vLL~k-------------R~~-------------------------~~g~W~~PgG~ve~gEt~~~   55 (165)
T d1jkna_          15 RNVGICLMN-NDKKIFAAS-------------RLD-------------------------IPDAWQMPQGGIDEGEDPRN   55 (165)
T ss_dssp             EEEEEEEEC-TTSCEEEEE-------------ESS-------------------------STTCEECCEECCCTTCCHHH
T ss_pred             ccEEEEEEe-CCCEEEEEE-------------EcC-------------------------CCCcccCccceEcCCCChhH
Confidence            478888887 478999998             321                         12458899999999999999


Q ss_pred             HHHHHHHhhhCCccCCCceEEEE--E--EEc------------CCCccCeEEEEEEEEEcCccc-cc--CCCCCCCceEE
Q psy11834        127 IAREEVLEECGYDVPVEKLEKIQ--T--FRS------------GVGSAGDRQTLFFVEVTDDMK-VN--SGGGVDEELIE  187 (230)
Q Consensus       127 AA~REl~EETGl~v~~~~l~~l~--~--~~~------------~~~~s~~~~~~y~a~~~~~~~-~~--~~~~~~~E~~~  187 (230)
                      ||.||++||||+.+  ..+....  .  ...            .........+.|++...+.+. +.  .......|+.+
T Consensus        56 Aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~  133 (165)
T d1jkna_          56 AAIRELREETGVTS--AEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGE  133 (165)
T ss_dssp             HHHHHHHHHTCCCS--EEEEEECSSCEEEECCHHHHHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEE
T ss_pred             HHHHHHHHhhcccc--ccccccccccccccccceeeceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEE
Confidence            99999999999988  4433221  1  110            123334455667776654321 11  11124569999


Q ss_pred             EEEEcHHHHHHHh
Q psy11834        188 VVEMGLEEAREYL  200 (230)
Q Consensus       188 v~wv~~eE~~~~~  200 (230)
                      +.|++++++.+++
T Consensus       134 ~~W~~~~el~~~i  146 (165)
T d1jkna_         134 WSWVTPEQLIDLT  146 (165)
T ss_dssp             EEEECTTHHHHHS
T ss_pred             eEECCHHHHHHhc
Confidence            9999999999875

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.67  E-value=4.8e-16  Score=119.22  Aligned_cols=88  Identities=15%  Similarity=0.037  Sum_probs=61.7

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEE----EEcCCCccCeEEEEEEEEEcCcccccCCCCCCCc
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT----FRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEE  184 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~----~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E  184 (230)
                      ..|.+|||++|+|||+.+||+||++||||+++  ..+..+..    ...........+.+|++.......    ...+.|
T Consensus        29 g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~E  102 (137)
T d1ktga_          29 HHWTPPKGHVDPGEDEWQAAIRETKEEANITK--EQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDD----VQLSHE  102 (137)
T ss_dssp             CCEESSEEECCTTCCHHHHHHHHHHHHHCCCG--GGEEEEEEEEEEEEEEETTEEEEEEEEEEEECSCCC----CCCCTT
T ss_pred             CcEeCcccccccCCCHHHHHHHHHHHHhCCcc--eeeeeeeeeeeeeecCCCcceEEEEEEEEEecCCCC----cCCCcc
Confidence            46889999999999999999999999999998  54443332    112222333445566666543211    124568


Q ss_pred             eEEEEEEcHHHHHHHhhc
Q psy11834        185 LIEVVEMGLEEAREYLAQ  202 (230)
Q Consensus       185 ~~~v~wv~~eE~~~~~~~  202 (230)
                      +.++.|++++++.+++..
T Consensus       103 ~~~~~W~~~~e~~~~~~~  120 (137)
T d1ktga_         103 HQNWKWCELEDAIKIADY  120 (137)
T ss_dssp             EEEEEEECHHHHHHHHCC
T ss_pred             eEEEEEEEHHHHHHhcCC
Confidence            999999999999988653

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.67  E-value=1e-16  Score=126.90  Aligned_cols=84  Identities=18%  Similarity=0.162  Sum_probs=57.3

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV  188 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v  188 (230)
                      ..|+||||++|+|||+.+||.||++||||+.+....+..+..+... .......++|.|....      +.....|..++
T Consensus        36 ~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~e~~~~  108 (155)
T d2b06a1          36 SGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLD-TGGRYIVICYKATEFS------GTLQSSEEGEV  108 (155)
T ss_dssp             CEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECT-TSCEEEEEEEEECEEE------ECCCCBTTBEE
T ss_pred             CcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecC-CCCeEEEEEEEEEecC------CccCCCchheE
Confidence            4599999999999999999999999999999943333333333332 2223344555554221      12234556689


Q ss_pred             EEEcHHHHHHH
Q psy11834        189 VEMGLEEAREY  199 (230)
Q Consensus       189 ~wv~~eE~~~~  199 (230)
                      .|++++++.++
T Consensus       109 ~W~~~~el~~l  119 (155)
T d2b06a1         109 SWVQKDQIPNL  119 (155)
T ss_dssp             EEEEGGGGGGS
T ss_pred             EEEEHHHhccC
Confidence            99999998765

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.1e-16  Score=122.04  Aligned_cols=107  Identities=21%  Similarity=0.162  Sum_probs=70.8

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEE----EEcCCCccCeEEEEEEEEEcCcccccCCCCCCCc
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT----FRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEE  184 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~----~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E  184 (230)
                      ..|.+|||++++|||+.+||.||++||||+.+  ..+..+..    ............++|++......   ......+|
T Consensus        41 ~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~E  115 (153)
T d1xsba_          41 HHWTPPKGHVEPGEDDLETALRATQEEAGIEA--GQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYD---VEIRLSHE  115 (153)
T ss_dssp             CCEECCEEECCSSSCHHHHHHHHHHHTTSCCT--TTEEECSSCCEEEEEESSSCEEEEEEEEEEESCTT---CCCCCCTT
T ss_pred             CcEECCeeecCCCCCHHHHHHHHHHHHhCCcc--ceeeeeccceeeecccccCceeEEEEEEEEEeecc---cccCCCcc
Confidence            35889999999999999999999999999998  55544432    11222233344556666554321   11224578


Q ss_pred             eEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q psy11834        185 LIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA  223 (230)
Q Consensus       185 ~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~  223 (230)
                      +.++.|++++++.+++....++   ..+-.+.-+|++++
T Consensus       116 ~~~~~W~~~~e~~~~~~~~~~~---~iL~~~~~~L~~~~  151 (153)
T d1xsba_         116 HQAYRWLGLEEACQLAQFKEMK---AALQEGHQFLCSIE  151 (153)
T ss_dssp             EEEEEEECHHHHHHHTCSHHHH---HHHHHHHHHHTTSS
T ss_pred             eeEEEEEEHHHHHHhcCCHHHH---HHHHHHHHHHhccc
Confidence            9999999999999987644332   22334455555543

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=126.07  Aligned_cols=84  Identities=19%  Similarity=0.205  Sum_probs=54.8

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEE--EEcCCCccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT--FRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEEL  185 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~--~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~  185 (230)
                      ...|.+|||++++|||+.+||+||++||||+.+  ..+..++.  +..........+++|.+.  .    ..+...+.+.
T Consensus        29 ~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~ee  100 (156)
T d1irya_          29 AGRWNGFGGKVQEGETIEDGARRELQEESGLTV--DALHKVGQIVFEFVGEPELMDVHVFCTD--S----IQGTPVESDE  100 (156)
T ss_dssp             BTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCB--SCCCEEEEEEEEETTCSCEEEEEEECCC--C----BCSCCCCCSS
T ss_pred             CCEEECcEeEecCCCCHHHHHHHHHHHHHCCcc--cceEEEEEEEEEcCCCCEEEEEEEEEEE--e----ecCcccCCch
Confidence            356899999999999999999999999999998  44444443  333222222223333322  1    1223334455


Q ss_pred             EEEEEEcHHHHHHH
Q psy11834        186 IEVVEMGLEEAREY  199 (230)
Q Consensus       186 ~~v~wv~~eE~~~~  199 (230)
                      .+..|++++++..+
T Consensus       101 ~~~~W~~~~~l~~~  114 (156)
T d1irya_         101 MRPCWFQLDQIPFK  114 (156)
T ss_dssp             EEEEEEETTCCCST
T ss_pred             hheEEeEHHHCCcC
Confidence            67899999987653

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.4e-17  Score=127.86  Aligned_cols=83  Identities=17%  Similarity=0.131  Sum_probs=57.3

Q ss_pred             CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834        108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE  187 (230)
Q Consensus       108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~  187 (230)
                      +..|+||||++|+|||+.+||.||++||||+.+  .....+..+.......+...++|.+...      .+.....|..+
T Consensus        30 ~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~E~~~  101 (129)
T d1puna_          30 ANKLEFPGGKIEMGETPEQAVVRELQEEVGITP--QHFSLFEKLEYEFPDRHITLWFWLVERW------EGEPWGKEGQP  101 (129)
T ss_dssp             TTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCC--CCCCCSEEEEEECSSEEEEEEEEECCCC------SSCCCTTSSSC
T ss_pred             CCcEECCcceecCCCchhHHHHHHHHHHhCCcc--ccceeeeEEeecccccceeEEEEEEeec------cCcCCCCccce
Confidence            567899999999999999999999999999999  5444444433332233344455555421      12223345667


Q ss_pred             EEEEcHHHHHH
Q psy11834        188 VVEMGLEEARE  198 (230)
Q Consensus       188 v~wv~~eE~~~  198 (230)
                      +.|++++++..
T Consensus       102 ~~W~~~~el~~  112 (129)
T d1puna_         102 GEWMSLVGLNA  112 (129)
T ss_dssp             CEEECGGGCCT
T ss_pred             EEEEEHHHccc
Confidence            89999998754

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.62  E-value=7e-16  Score=126.82  Aligned_cols=117  Identities=15%  Similarity=0.163  Sum_probs=81.2

Q ss_pred             ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834         45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL  124 (230)
Q Consensus        45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~  124 (230)
                      ++-+|.|++++..+.++||++               |.... +                  ..+..|.||||++|+||++
T Consensus        31 r~aaVlv~~~~~~~~~vll~k---------------R~~~l-~------------------~h~G~~~fPGG~~e~~E~~   76 (187)
T d1nqza_          31 RRAAVLVALTREADPRVLLTV---------------RSSEL-P------------------THKGQIAFPGGSLDAGETP   76 (187)
T ss_dssp             EEEEEEEEEESSSSCBBCEEE---------------EC-------------------------CCCEECSEEECCTTCCH
T ss_pred             CccEEEEEEEECCCCEEEEEE---------------cCCCC-C------------------CCCCeEeCCccccccCCch
Confidence            455777777654456899988               43321 0                  1346788999999999999


Q ss_pred             HHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834        125 AEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY  199 (230)
Q Consensus       125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~  199 (230)
                      .+||+||++||||+..  ..+..++.+......++..++.|++.+.....  .....++|..++.|++++++.+.
T Consensus        77 ~~aAlRE~~EE~Gl~~--~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~~~--~~~~~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_          77 TQAALREAQEEVALDP--AAVTLLGELDDVFTPVGFHVTPVLGRIAPEAL--DTLRVTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             HHHHHHHHHHHHCCCG--GGCEEEEECCCEEETTTEEEEEEEEEECGGGG--GGCCCCTTEEEEECCBHHHHHHS
T ss_pred             hHHHHHHHHHhhcccc--ceeEEeecccceeeccccEEEEEEEEECCccc--cccccCCcceEEEeccHHHHhcC
Confidence            9999999999999998  77777776332222345567778877643211  12235678899999999998764

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.61  E-value=2.7e-16  Score=124.41  Aligned_cols=87  Identities=11%  Similarity=0.115  Sum_probs=59.6

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc--cCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS--AGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~--s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      ..|.||||++++|||+.+||+||++||||+.+  ..+..++.+......  .......|++.+...    ......+|..
T Consensus        39 g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~e~~  112 (147)
T d2fb1a2          39 GEWSLMGGFVQKDESVDDAAKRVLAELTGLEN--VYMEQVGAFGAIDRDPGERVVSIAYYALININ----EYDRELVQKH  112 (147)
T ss_dssp             TCEECEEEECCTTSCHHHHHHHHHHHHHCCCS--CEEEEEEEECCTTSSSSSCEEEEEEEEECCTT----SSCHHHHHHT
T ss_pred             CcEeCcEeeecCCCCHHHHHHHHHHHHhCCcc--cceeeeeEecCCcccCCCceEEEEEEEEecCC----cccCCCcchh
Confidence            45889999999999999999999999999988  777777665332211  222334556654321    1112234555


Q ss_pred             EEEEEcHHHHHHHhh
Q psy11834        187 EVVEMGLEEAREYLA  201 (230)
Q Consensus       187 ~v~wv~~eE~~~~~~  201 (230)
                      ++.|++++++..+..
T Consensus       113 ~~~W~~~~~lp~laf  127 (147)
T d2fb1a2         113 NAYWVNINELPALIF  127 (147)
T ss_dssp             TEEEEETTSCCCBST
T ss_pred             heEEecHHhchhccc
Confidence            789999999876543

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.54  E-value=2.3e-14  Score=118.93  Aligned_cols=87  Identities=20%  Similarity=0.223  Sum_probs=61.7

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCC-ccCeEEE-EEEEEEcCcccccCCCCCCCceE
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVG-SAGDRQT-LFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~-~s~~~~~-~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      ..|.||||++++|||+.+||.||++||||+.+.+..+..+..+..... .....+. .|++.+. ..    .....+|..
T Consensus        68 g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~~~~~~~~~r~~~~~~i~~~~~~~~~-~~----~~~~~~e~~  142 (202)
T d2fmla2          68 NSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIG-EE----PLIAGDDAK  142 (202)
T ss_dssp             TCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSEEEEEEEEECC-CC----CCCCCTTEE
T ss_pred             CcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeeeeeecccCCccccceEEEEEEEEEeC-CC----CcCCCccee
Confidence            458899999999999999999999999999986677877776543321 1223334 4444432 21    112456888


Q ss_pred             EEEEEcHHHHHHHh
Q psy11834        187 EVVEMGLEEAREYL  200 (230)
Q Consensus       187 ~v~wv~~eE~~~~~  200 (230)
                      ++.|++++++...+
T Consensus       143 ~~~Wf~ld~l~~~~  156 (202)
T d2fmla2         143 EVHWFNLERHGQHI  156 (202)
T ss_dssp             EEEEEEEEEETTEE
T ss_pred             eEEEEeHHHCcchh
Confidence            99999999987643

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.50  E-value=1.1e-15  Score=118.81  Aligned_cols=31  Identities=29%  Similarity=0.370  Sum_probs=29.7

Q ss_pred             EEEeeeeecCCCCCHHHHHHHHHHhhhCCcc
Q psy11834        110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDV  140 (230)
Q Consensus       110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v  140 (230)
                      .|.||||++|+||++.+||+||++||||+.+
T Consensus        24 ~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   54 (152)
T d1k2ea_          24 VYIYPGGHVEHNETPIEAVKREFEEETGIVV   54 (152)
T ss_dssp             SEECSEEECCTTCCHHHHHHHHHHHHHSEEE
T ss_pred             eEECCeeEEeCCccHHHHHHHHHHHHHCCce
Confidence            4889999999999999999999999999988

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.22  E-value=5.2e-12  Score=96.56  Aligned_cols=81  Identities=23%  Similarity=0.199  Sum_probs=49.7

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||+|.++++|+ .+++.||++||+|+++  .....++.+.+.-+.-...+++|.+.....      ....   .
T Consensus        29 ~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v--~~~~~l~~~~H~fsh~~~~~~~~~~~~~~~------~~~~---~   96 (127)
T d1rrqa2          29 LANLWEFPSCETDGADG-KEKLEQMVGEQYGLQV--ELTEPIVSFEHAFSHLVWQLTVFPGRLVHG------GPVE---E   96 (127)
T ss_dssp             TTTCEECCEEECTTTCC-HHHHHHTTC----CEE--EECSCCEEEEEECSSEEEEEEEEEEEEECC------SCCC---T
T ss_pred             CCCceecccccccCCCC-HHHHHHHhhhhcceEE--EeccccccceEecCCeEEEEEEEEEEECCC------Cccc---c
Confidence            56789999999997777 7899999999999988  433344444433222223455666664321      1111   2


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      +..|++++++.++
T Consensus        97 ~~~Wv~~~el~~~  109 (127)
T d1rrqa2          97 PYRLAPEDELKAY  109 (127)
T ss_dssp             TEEEEEGGGGGGS
T ss_pred             ceEEeeHHHHhHC
Confidence            4789999999654

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3e-10  Score=98.84  Aligned_cols=92  Identities=9%  Similarity=0.027  Sum_probs=56.8

Q ss_pred             cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCce-----------------EEEEE-EEcCCCccCe---EEEEEEE
Q psy11834        109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKL-----------------EKIQT-FRSGVGSAGD---RQTLFFV  167 (230)
Q Consensus       109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l-----------------~~l~~-~~~~~~~s~~---~~~~y~a  167 (230)
                      ..|.||||+||+||++.+||+||+.||||+.+.....                 ..+.. +...+..+..   ....|.+
T Consensus       150 g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddprntd~aw~etva~~~  229 (292)
T d1q33a_         150 GEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNY  229 (292)
T ss_dssp             CSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEE
T ss_pred             CcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccccCCCCCCEEEEEEEEE
Confidence            3478999999999999999999999999998743211                 11222 3333322222   1233444


Q ss_pred             EEcCcccccCCCC-CCCceEEEEEEcHHHHHHHh
Q psy11834        168 EVTDDMKVNSGGG-VDEELIEVVEMGLEEAREYL  200 (230)
Q Consensus       168 ~~~~~~~~~~~~~-~~~E~~~v~wv~~eE~~~~~  200 (230)
                      ............. ..+|..++.|++++++..|.
T Consensus       230 h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~L~  263 (292)
T d1q33a_         230 HDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLY  263 (292)
T ss_dssp             EESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCS
T ss_pred             EEcccccccccccCCCCchheEEEEEhhccccch
Confidence            4433221111112 35678899999999987653

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.02  E-value=1.9e-10  Score=94.88  Aligned_cols=89  Identities=17%  Similarity=0.156  Sum_probs=56.8

Q ss_pred             cEEEeeeeecCCCCC-HHHHHHHHHHhhhCCccCCCceE---EEEEEEcCCCccCeEEEEEEEEEcCccc------ccCC
Q psy11834        109 VTLEFCAGIVDKNKS-LAEIAREEVLEECGYDVPVEKLE---KIQTFRSGVGSAGDRQTLFFVEVTDDMK------VNSG  178 (230)
Q Consensus       109 ~~~elPgG~VE~GEs-~~eAA~REl~EETGl~v~~~~l~---~l~~~~~~~~~s~~~~~~y~a~~~~~~~------~~~~  178 (230)
                      ..|+||||++|+||+ .++||.||+.||||+.+....+.   +...... .+......++|++.+....-      ....
T Consensus        53 g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l~~~~~~~~~~~-~~~~~~v~~fy~~~~~~~~l~~~e~~~~~a  131 (196)
T d1u20a1          53 GRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVR-EHPQKCVTHFYIKELKLEEIERIEAEAVNA  131 (196)
T ss_dssp             SCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEE-CTTSCEEEEEEEEECCHHHHHHHHHHHTTS
T ss_pred             CcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEEEeeEEEEeccC-CCCCEEEEEEEEEEcchHHhhhhhhccccc
Confidence            358899999999996 67899999999999988433333   2222222 22333445566665432110      0112


Q ss_pred             CCCCCceEEEEEEcHHHHHH
Q psy11834        179 GGVDEELIEVVEMGLEEARE  198 (230)
Q Consensus       179 ~~~~~E~~~v~wv~~eE~~~  198 (230)
                      .....|..++.|+++.++.+
T Consensus       132 ~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1         132 KDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             TTBTTTEEEEEECCCSBCTT
T ss_pred             CcCCccccceeEEeHHHhcc
Confidence            23467899999999877643

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.2e-09  Score=81.55  Aligned_cols=87  Identities=13%  Similarity=0.036  Sum_probs=59.7

Q ss_pred             CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834        107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI  186 (230)
Q Consensus       107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~  186 (230)
                      .+..|+||+|.++.||+..++|.||..+|.+..+.......++.+.+.-+.-...+++|.+.+....      ....+..
T Consensus        40 l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH~~~~~~v~~~~~~~~~------~~~~~~~  113 (142)
T d1x51a1          40 LAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQT------PVTTVPP  113 (142)
T ss_dssp             TCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSCC------CCCCCCT
T ss_pred             CCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccCCcceEEEEEEEEEeCCC------cccccCc
Confidence            5789999999999999999998887777766655446666666655543333344667777654321      1122333


Q ss_pred             EEEEEcHHHHHHH
Q psy11834        187 EVVEMGLEEAREY  199 (230)
Q Consensus       187 ~v~wv~~eE~~~~  199 (230)
                      +..|++++++.++
T Consensus       114 ~~~W~~~~el~~~  126 (142)
T d1x51a1         114 GARWLTQEEFHTA  126 (142)
T ss_dssp             TEEEEEHHHHHHS
T ss_pred             cCEEeeHHHcccc
Confidence            5899999999874