Psyllid ID: psy11836

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHSLSSSRKQSHDDIKPRN
Secondary Structure (PSIPRED)
cEEHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHccHHHHcccccccccccccccccEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcHHHHHHHHHHHHHHHHHcccEEEEcccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MALLVLINFACWAPVTFFALTAAlgyplisvtKSKILLVFFypinscfnpYLYALLTKHYRRDLVLTLARIGICQERAHKYrmissglngntglhslsssrkqshddikprn
Flexible Loop (DISEMBL)
MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKYRMISSGlngntglhslsssrkqshddikprn
Low Complexity Region (SEG)
MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHSLSSSRKQSHDDIKPRN
Disordered region (IsUnstruct)
**LLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKYRMIS***************************
Disordered Region (DISOPRED)
MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIG****************************************
Disordered Region (DISEMBL)
MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKYRMISSGLNGNTGLH*****************
Disordered Region (DISPRO)
MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKYR******************************
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHSLSSSRKQSHDDIKPRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
P16235	700	Lutropin-choriogonadotrop	yes	N/A	0.732	0.117	0.573	8e-24
O02721	676	Lutropin-choriogonadotrop	no	N/A	0.973	0.161	0.467	1e-23
P22888	699	Lutropin-choriogonadotrop	yes	N/A	0.892	0.143	0.5	1e-23
Q28005	701	Lutropin-choriogonadotrop	yes	N/A	0.892	0.142	0.5	1e-23
P30730	700	Lutropin-choriogonadotrop	yes	N/A	0.732	0.117	0.560	2e-23
Q7ZTV5	693	Follicle-stimulating horm	N/A	N/A	0.776	0.125	0.540	3e-23
Q90674	366	Lutropin-choriogonadotrop	no	N/A	0.741	0.226	0.542	3e-23
P79763	693	Follicle-stimulating horm	no	N/A	0.776	0.125	0.540	3e-23
P16582	696	Lutropin-choriogonadotrop	yes	N/A	0.732	0.117	0.560	4e-23
Q6YNB6	694	Follicle-stimulating horm	N/A	N/A	0.776	0.125	0.528	5e-23

>sp|P16235|LSHR_RAT Lutropin-choriogonadotropic hormone receptor OS=Rattus norvegicus GN=Lhcgr PE=1 SV=1

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 63/82 (76%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MA+L+  +F C AP++FFA++AA   PLI+VT SKILLV FYP+NSC NP+LYA+ TK +
Sbjct: 575 MAILIFTDFTCMAPISFFAISAAFKVPLITVTNSKILLVLFYPVNSCANPFLYAIFTKAF 634

Query: 61  RRDLVLTLARIGICQERAHKYR 82
           +RD +L L+R G C+ RA  YR
Sbjct: 635 QRDFLLLLSRFGCCKRRAELYR 656

Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.
Rattus norvegicus (taxid: 10116)

>sp|O02721|LSHR_CALJA Lutropin-choriogonadotropic hormone receptor OS=Callithrix jacchus GN=LHCGR PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 69/109 (63%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MA+L+  +F C AP++FFA++AA   PLI+VT SK+LLV FYPINSC NP+LYA+ TK +
Sbjct: 548 MAILIFTDFTCMAPISFFAISAAFKMPLITVTNSKVLLVLFYPINSCANPFLYAIFTKTF 607

Query: 61  RRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHSLSSSRKQSHDDIK 109
           RRD  L L + G C+ RA  YR        +   +  + S K S   +K
Sbjct: 608 RRDFFLLLGKFGCCKHRAELYRRKDFSAYTSNYKNGFTGSSKPSQSTLK 656

Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Callithrix jacchus (taxid: 9483)

>sp|P22888|LSHR_HUMAN Lutropin-choriogonadotropic hormone receptor OS=Homo sapiens GN=LHCGR PE=1 SV=4

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 71/106 (66%), Gaps = 6/106 (5%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MA+L+  +F C AP++FFA++AA   PLI+VT SK+LLV FYPINSC NP+LYA+ TK +
Sbjct: 571 MAILIFTDFTCMAPISFFAISAAFKVPLITVTNSKVLLVLFYPINSCANPFLYAIFTKTF 630

Query: 61  RRDLVLTLARIGICQERAHKYR------MISSGLNGNTGLHSLSSS 100
           +RD  L L++ G C+ RA  YR        S+  NG TG +  S S
Sbjct: 631 QRDFFLLLSKFGCCKRRAELYRRKDFSAYTSNCKNGFTGSNKPSQS 676

Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Homo sapiens (taxid: 9606)

>sp|Q28005|LSHR_BOVIN Lutropin-choriogonadotropic hormone receptor OS=Bos taurus GN=LHCGR PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 72/106 (67%), Gaps = 6/106 (5%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MA+L+  +F C AP++FFA++AA   PLI+VT SK+LLV FYP+NSC NP+LYA+ TK +
Sbjct: 573 MAVLIFTDFTCMAPISFFAISAAFKVPLITVTNSKVLLVLFYPVNSCANPFLYAIFTKAF 632

Query: 61  RRDLVLTLARIGICQERAHKYR------MISSGLNGNTGLHSLSSS 100
           +RD  L L++ G C+ RA  YR       IS+  NG TG +  S S
Sbjct: 633 QRDFFLLLSKFGCCKYRAELYRRKDFSAYISNCKNGFTGSNKPSRS 678

Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Bos taurus (taxid: 9913)

>sp|P30730|LSHR_MOUSE Lutropin-choriogonadotropic hormone receptor OS=Mus musculus GN=Lhcgr PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 62/82 (75%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MA+L+  +F C AP++FFA++AA   PLI+VT SK+LLV FYP+NSC NP+LYA+ TK +
Sbjct: 575 MAILIFTDFTCMAPISFFAISAAFKVPLITVTNSKVLLVLFYPVNSCANPFLYAVFTKAF 634

Query: 61  RRDLVLTLARIGICQERAHKYR 82
           +RD  L L+R G C+ RA  YR
Sbjct: 635 QRDFFLLLSRFGCCKHRAELYR 656

Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Mus musculus (taxid: 10090)

>sp|Q7ZTV5|FSHR_CAIMO Follicle-stimulating hormone receptor OS=Cairina moschata GN=FSHR PE=2 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 66/87 (75%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MA+L+  +F C AP++FFA++A+L  PLI+V+KSKILLV FYPINSC NP+LYA+ TK +
Sbjct: 574 MAILIFTDFLCMAPISFFAISASLKVPLITVSKSKILLVLFYPINSCANPFLYAIFTKTF 633

Query: 61  RRDLVLTLARIGICQERAHKYRMISSG 87
           RRD  + L++ G C+ +A  YR  +S 
Sbjct: 634 RRDFFILLSKFGCCEMQAQIYRTDTSS 660

Receptor for follicle-stimulating hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Cairina moschata (taxid: 8855)

>sp|Q90674|LSHR_CHICK Lutropin-choriogonadotropic hormone receptor (Fragment) OS=Gallus gallus GN=LHCGR PE=2 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 65/83 (78%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MA+L+  +F C AP++FFA++AA+  PLI+VT SKILLV FYP+NSC NP+LYA+ TK +
Sbjct: 234 MAILIFTDFTCMAPISFFAISAAIKVPLITVTNSKILLVLFYPVNSCANPFLYAIFTKAF 293

Query: 61  RRDLVLTLARIGICQERAHKYRM 83
           +RD  L ++++G C+ RA  YR+
Sbjct: 294 QRDFFLLMSKLGCCKSRAELYRV 316

Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Gallus gallus (taxid: 9031)

>sp|P79763|FSHR_CHICK Follicle-stimulating hormone receptor OS=Gallus gallus GN=FSHR PE=2 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 66/87 (75%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MA+L+  +F C AP++FFA++A+L  PLI+V+KSKILLV FYPINSC NP+LYA+ TK +
Sbjct: 574 MAILIFTDFLCMAPISFFAISASLRVPLITVSKSKILLVLFYPINSCANPFLYAIFTKTF 633

Query: 61  RRDLVLTLARIGICQERAHKYRMISSG 87
           RRD  + L++ G C+ +A  YR  +S 
Sbjct: 634 RRDFFILLSKFGCCEMQAQIYRTETSS 660

Receptor for follicle-stimulating hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Gallus gallus (taxid: 9031)

>sp|P16582|LSHR_PIG Lutropin-choriogonadotropic hormone receptor OS=Sus scrofa GN=LHCGR PE=2 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 63/82 (76%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MA+L+  +F C AP++FFA++AAL  PLI+VT SK+LLV FYP+NSC NP+LYA+ TK +
Sbjct: 571 MAVLIFTDFTCMAPISFFAISAALKVPLITVTNSKVLLVLFYPVNSCANPFLYAIFTKAF 630

Query: 61  RRDLVLTLARIGICQERAHKYR 82
           RRD  L L++ G C+ +A  YR
Sbjct: 631 RRDFFLLLSKSGCCKHQAELYR 652

Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Sus scrofa (taxid: 9823)

>sp|Q6YNB6|FSHR_MACEU Follicle-stimulating hormone receptor OS=Macropus eugenii GN=FSHR PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 66/87 (75%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MA+L+  +F C AP++FFA++A++  PLI+V+KSKILLV FYPINSC NP+LYA+ TK +
Sbjct: 575 MAMLIFTDFLCMAPISFFAISASVKMPLITVSKSKILLVLFYPINSCANPFLYAVFTKTF 634

Query: 61  RRDLVLTLARIGICQERAHKYRMISSG 87
           RRD  + L++ G C+ +A  YR  +S 
Sbjct: 635 RRDFFILLSKFGCCEMQAQIYRTETSS 661

Receptor for follicle-stimulating hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase.

Macropus eugenii (taxid: 9315)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
391333790	652	PREDICTED: follicle-stimulating hormone	0.830	0.142	0.677	2e-30
170043092	841	leucine-rich transmembrane protein [Cule	0.767	0.102	0.686	7e-29
321460227	786	hypothetical protein DAPPUDRAFT_290661 [	0.732	0.104	0.707	1e-28
241564173	363	ribosomal protein L31, putative [Ixodes	0.973	0.300	0.596	3e-28
328708954	731	PREDICTED: lutropin-choriogonadotropic h	0.732	0.112	0.695	7e-28
347971116	959	AGAP004035-PA [Anopheles gambiae str. PE	0.767	0.089	0.674	8e-28
157105802	860	leucine-rich transmembrane protein [Aede	0.767	0.1	0.662	1e-27
1518464	831	FSH-TSH [Drosophila melanogaster] gi|151	0.776	0.104	0.655	2e-27
24647764	831	Lgr1, isoform A [Drosophila melanogaster	0.776	0.104	0.655	2e-27
20151839	831	RH44949p [Drosophila melanogaster]	0.776	0.104	0.655	2e-27

>gi|391333790|ref|XP_003741293.1| PREDICTED: follicle-stimulating hormone receptor-like [Metaseiulus occidentalis]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 73/93 (78%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MALLV  +FACWAP+ FF LTA  GYPLI +TKSKILLVFFYP+NSC NP+LYA+LT+ Y
Sbjct: 451 MALLVFTDFACWAPIAFFGLTAVAGYPLIDMTKSKILLVFFYPLNSCANPFLYAILTRQY 510

Query: 61  RRDLVLTLARIGICQERAHKYRMISSGLNGNTG 93
           RRDL + LAR G+C  RA KY+  SSG N N G
Sbjct: 511 RRDLFILLARYGLCTSRASKYKDASSGNNPNHG 543

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043092|ref|XP_001849235.1| leucine-rich transmembrane protein [Culex quinquefasciatus] gi|167866512|gb|EDS29895.1| leucine-rich transmembrane protein [Culex quinquefasciatus]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 68/86 (79%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MALLV  NFACWAP+ FF LTA  GYPLI VTKSKILLVFFYP+NSC NPYLYA+LT  Y
Sbjct: 679 MALLVFTNFACWAPIAFFGLTAIAGYPLIDVTKSKILLVFFYPLNSCANPYLYAILTMQY 738

Query: 61  RRDLVLTLARIGICQERAHKYRMISS 86
           R+DL + L+  GIC +RA +Y+M  S
Sbjct: 739 RKDLFMLLSNYGICTQRAQQYKMTYS 764

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321460227|gb|EFX71271.1| hypothetical protein DAPPUDRAFT_290661 [Daphnia pulex]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 66/82 (80%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MALLV  NFACW P+ FF LTA  GYPLISVT SKILLVFFYP+N+C NPYLYAL+T+ Y
Sbjct: 650 MALLVFTNFACWTPIAFFGLTAVAGYPLISVTNSKILLVFFYPLNACTNPYLYALVTQQY 709

Query: 61  RRDLVLTLARIGICQERAHKYR 82
           RRDL + L+R G C ERA +YR
Sbjct: 710 RRDLFILLSRYGFCTERASRYR 731

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241564173|ref|XP_002401843.1| ribosomal protein L31, putative [Ixodes scapularis] gi|215499911|gb|EEC09405.1| ribosomal protein L31, putative [Ixodes scapularis]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 80/114 (70%), Gaps = 5/114 (4%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MALLV  +FACWAP+ FF LTA  GYPLI VT SKILLVFFYP+NSC NP+LYA+LTK Y
Sbjct: 231 MALLVFTDFACWAPIAFFGLTAVAGYPLIDVTNSKILLVFFYPLNSCANPFLYAILTKQY 290

Query: 61  RRDLVLTLARIGICQERAHKYRMISSGLN---GNTG-LHSLSSSRKQSHDDIKP 110
           RRDL + L+R G C  RA +Y+  SS L+    N G L SL  + +Q  D I P
Sbjct: 291 RRDLFVLLSRYGFCTRRAMRYKDTSSVLHTAPNNRGILLSLQGNHRQ-RDVITP 343

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708954|ref|XP_003243835.1| PREDICTED: lutropin-choriogonadotropic hormone receptor-like [Acyrthosiphon pisum]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 66/82 (80%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MALLV  +FACWAPV FF LTA  GYPLI V K+KILLVFFYP+NSC NPYLYALLT+ Y
Sbjct: 511 MALLVFTDFACWAPVAFFGLTALAGYPLIDVPKTKILLVFFYPLNSCANPYLYALLTQQY 570

Query: 61  RRDLVLTLARIGICQERAHKYR 82
           RRDL + L+R G+C  RA +Y+
Sbjct: 571 RRDLFVLLSRFGVCSRRADEYK 592

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347971116|ref|XP_309589.2| AGAP004035-PA [Anopheles gambiae str. PEST] gi|333466596|gb|EAA05376.3| AGAP004035-PA [Anopheles gambiae str. PEST]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 67/86 (77%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MALLV  NFACWAP+ FF LTA  GYPLI V+KSKILLVFFYP+NSC NPYLYA+LT  Y
Sbjct: 784 MALLVFTNFACWAPIAFFGLTAIAGYPLIGVSKSKILLVFFYPLNSCANPYLYAILTVQY 843

Query: 61  RRDLVLTLARIGICQERAHKYRMISS 86
           R+DL   LA  G+C +RA +Y+M  S
Sbjct: 844 RKDLFSLLANYGLCTQRAQQYKMTYS 869

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105802|ref|XP_001649032.1| leucine-rich transmembrane protein [Aedes aegypti]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 66/86 (76%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MALLV  NFACWAP+ FF LTA  GYPLI VTKSKILLVFFYP+NSC NPYLYA+LT  Y
Sbjct: 690 MALLVFTNFACWAPIAFFGLTAIAGYPLIDVTKSKILLVFFYPLNSCANPYLYAILTMQY 749

Query: 61  RRDLVLTLARIGICQERAHKYRMISS 86
           R+D    L+  G+C +RA +Y+M  S
Sbjct: 750 RKDFFTLLSNYGLCTQRAQQYKMTYS 775

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1518464|gb|AAB07030.1| FSH-TSH [Drosophila melanogaster] gi|1518487|gb|AAB07999.1| TSH, FSH, LH/CG receptor [Drosophila melanogaster]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 70/87 (80%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MALLV  NFACW+P+ FF LTA  GYPLI+VTKSKILLVFFYP+NSC +PYLYA+LT  Y
Sbjct: 704 MALLVFTNFACWSPIAFFGLTALAGYPLINVTKSKILLVFFYPLNSCADPYLYAILTSQY 763

Query: 61  RRDLVLTLARIGICQERAHKYRMISSG 87
           R+DL   L+++G+CQ+ A KY+   SG
Sbjct: 764 RQDLFTLLSKLGLCQQSALKYKDSLSG 790

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24647764|ref|NP_524393.2| Lgr1, isoform A [Drosophila melanogaster] gi|24647766|ref|NP_732265.1| Lgr1, isoform B [Drosophila melanogaster] gi|23171579|gb|AAF55460.2| Lgr1, isoform A [Drosophila melanogaster] gi|23171580|gb|AAN13752.1| Lgr1, isoform B [Drosophila melanogaster] gi|333470776|gb|AEF33881.1| LP13728p [Drosophila melanogaster]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 70/87 (80%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MALLV  NFACW+P+ FF LTA  GYPLI+VTKSKILLVFFYP+NSC +PYLYA+LT  Y
Sbjct: 704 MALLVFTNFACWSPIAFFGLTALAGYPLINVTKSKILLVFFYPLNSCADPYLYAILTSQY 763

Query: 61  RRDLVLTLARIGICQERAHKYRMISSG 87
           R+DL   L+++G+CQ+ A KY+   SG
Sbjct: 764 RQDLFTLLSKLGLCQQSALKYKDSLSG 790

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20151839|gb|AAM11279.1| RH44949p [Drosophila melanogaster]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 70/87 (80%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           MALLV  NFACW+P+ FF LTA  GYPLI+VTKSKILLVFFYP+NSC +PYLYA+LT  Y
Sbjct: 704 MALLVFTNFACWSPIAFFGLTALAGYPLINVTKSKILLVFFYPLNSCADPYLYAILTSQY 763

Query: 61  RRDLVLTLARIGICQERAHKYRMISSG 87
           R+DL   L+++G+CQ+ A KY+   SG
Sbjct: 764 RQDLFTLLSKLGLCQQSALKYKDSLSG 790

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
FB|FBgn0016650	831	Lgr1 [Drosophila melanogaster	0.776	0.104	0.655	4.8e-27
UNIPROTKB|Q90674	366	LHCGR "Lutropin-choriogonadotr	0.741	0.226	0.542	1e-22
UNIPROTKB|F1LMG6	598	Lhcgr "Lutropin-choriogonadotr	0.732	0.137	0.573	4.4e-22
UNIPROTKB|E9PDH1	637	LHCGR "Lutropin-choriogonadotr	0.973	0.171	0.458	5.1e-22
UNIPROTKB|E7ENI1	672	LHCGR "Lutropin-choriogonadotr	0.973	0.162	0.458	5.7e-22
UNIPROTKB|P22888	699	LHCGR "Lutropin-choriogonadotr	0.973	0.155	0.458	6.2e-22
RGD|3007	700	Lhcgr "luteinizing hormone/cho	0.732	0.117	0.573	6.2e-22
UNIPROTKB|P16235	700	Lhcgr "Lutropin-choriogonadotr	0.732	0.117	0.573	6.2e-22
UNIPROTKB|F1SQI7	618	LHCGR "Lutropin-choriogonadotr	0.892	0.161	0.504	7.8e-22
UNIPROTKB|F1MMH0	639	LHCGR "Lutropin-choriogonadotr	0.892	0.156	0.5	8.4e-22

FB|FBgn0016650 Lgr1 [Drosophila melanogaster (taxid:7227)]

 Score = 314 (115.6 bits), Expect = 4.8e-27, P = 4.8e-27
 Identities = 57/87 (65%), Positives = 70/87 (80%)

Query:     1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
             MALLV  NFACW+P+ FF LTA  GYPLI+VTKSKILLVFFYP+NSC +PYLYA+LT  Y
Sbjct:   704 MALLVFTNFACWSPIAFFGLTALAGYPLINVTKSKILLVFFYPLNSCADPYLYAILTSQY 763

Query:    61 RRDLVLTLARIGICQERAHKYRMISSG 87
             R+DL   L+++G+CQ+ A KY+   SG
Sbjct:   764 RQDLFTLLSKLGLCQQSALKYKDSLSG 790

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0016500 "protein-hormone receptor activity" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

UNIPROTKB|Q90674 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Gallus gallus (taxid:9031)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 45/83 (54%), Positives = 65/83 (78%)

Query:     1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
             MA+L+  +F C AP++FFA++AA+  PLI+VT SKILLV FYP+NSC NP+LYA+ TK +
Sbjct:   234 MAILIFTDFTCMAPISFFAISAAIKVPLITVTNSKILLVLFYPVNSCANPFLYAIFTKAF 293

Query:    61 RRDLVLTLARIGICQERAHKYRM 83
             +RD  L ++++G C+ RA  YR+
Sbjct:   294 QRDFFLLMSKLGCCKSRAELYRV 316

GO:0004964 "luteinizing hormone receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1LMG6 Lhcgr "Lutropin-choriogonadotropic hormone receptor" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 4.4e-22, P = 4.4e-22
 Identities = 47/82 (57%), Positives = 63/82 (76%)

Query:     1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
             MA+L+  +F C AP++FFA++AA   PLI+VT SKILLV FYP+NSC NP+LYA+ TK +
Sbjct:   473 MAILIFTDFTCMAPISFFAISAAFKVPLITVTNSKILLVLFYPVNSCANPFLYAIFTKAF 532

Query:    61 RRDLVLTLARIGICQERAHKYR 82
             +RD +L L+R G C+ RA  YR
Sbjct:   533 QRDFLLLLSRFGCCKRRAELYR 554

GO:0004964 "luteinizing hormone receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PDH1 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Homo sapiens (taxid:9606)]

 Score = 265 (98.3 bits), Expect = 5.1e-22, P = 5.1e-22
 Identities = 50/109 (45%), Positives = 70/109 (64%)

Query:     1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
             MA+L+  +F C AP++FFA++AA   PLI+VT SK+LLV FYPINSC NP+LYA+ TK +
Sbjct:   509 MAILIFTDFTCMAPISFFAISAAFKVPLITVTNSKVLLVLFYPINSCANPFLYAIFTKTF 568

Query:    61 RRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHSLSSSRKQSHDDIK 109
             +RD  L L++ G C+ RA  YR        +   +  + S K S   +K
Sbjct:   569 QRDFFLLLSKFGCCKRRAELYRRKDFSAYTSNCKNGFTGSNKPSQSTLK 617

GO:0004964 "luteinizing hormone receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E7ENI1 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Homo sapiens (taxid:9606)]

 Score = 265 (98.3 bits), Expect = 5.7e-22, P = 5.7e-22
 Identities = 50/109 (45%), Positives = 70/109 (64%)

Query:     1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
             MA+L+  +F C AP++FFA++AA   PLI+VT SK+LLV FYPINSC NP+LYA+ TK +
Sbjct:   544 MAILIFTDFTCMAPISFFAISAAFKVPLITVTNSKVLLVLFYPINSCANPFLYAIFTKTF 603

Query:    61 RRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHSLSSSRKQSHDDIK 109
             +RD  L L++ G C+ RA  YR        +   +  + S K S   +K
Sbjct:   604 QRDFFLLLSKFGCCKRRAELYRRKDFSAYTSNCKNGFTGSNKPSQSTLK 652

GO:0004964 "luteinizing hormone receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P22888 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Homo sapiens (taxid:9606)]

 Score = 265 (98.3 bits), Expect = 6.2e-22, P = 6.2e-22
 Identities = 50/109 (45%), Positives = 70/109 (64%)

Query:     1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
             MA+L+  +F C AP++FFA++AA   PLI+VT SK+LLV FYPINSC NP+LYA+ TK +
Sbjct:   571 MAILIFTDFTCMAPISFFAISAAFKVPLITVTNSKVLLVLFYPINSCANPFLYAIFTKTF 630

Query:    61 RRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHSLSSSRKQSHDDIK 109
             +RD  L L++ G C+ RA  YR        +   +  + S K S   +K
Sbjct:   631 QRDFFLLLSKFGCCKRRAELYRRKDFSAYTSNCKNGFTGSNKPSQSTLK 679

GO:0004964 "luteinizing hormone receptor activity" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0046544 "development of secondary male sexual characteristics" evidence=IEA

GO:0060065 "uterus development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0090030 "regulation of steroid hormone biosynthetic process" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0030539 "male genitalia development" evidence=TAS

GO:0008584 "male gonad development" evidence=TAS

GO:0005768 "endosome" evidence=TAS

GO:0007187 "G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007190 "activation of adenylate cyclase activity" evidence=ISS

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=ISS

GO:0032962 "positive regulation of inositol trisphosphate biosynthetic process" evidence=ISS

GO:0043950 "positive regulation of cAMP-mediated signaling" evidence=ISS

GO:0071371 "cellular response to gonadotropin stimulus" evidence=ISS

GO:0035472 "choriogonadotropin hormone receptor activity" evidence=ISS

GO:0038106 "choriogonadotropin hormone binding" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

RGD|3007 Lhcgr "luteinizing hormone/choriogonadotropin receptor" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 6.2e-22, P = 6.2e-22
 Identities = 47/82 (57%), Positives = 63/82 (76%)

Query:     1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
             MA+L+  +F C AP++FFA++AA   PLI+VT SKILLV FYP+NSC NP+LYA+ TK +
Sbjct:   575 MAILIFTDFTCMAPISFFAISAAFKVPLITVTNSKILLVLFYPVNSCANPFLYAIFTKAF 634

Query:    61 RRDLVLTLARIGICQERAHKYR 82
             +RD +L L+R G C+ RA  YR
Sbjct:   635 QRDFLLLLSRFGCCKRRAELYR 656

GO:0001541 "ovarian follicle development" evidence=ISO

GO:0004964 "luteinizing hormone receptor activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISO;IDA

GO:0006622 "protein targeting to lysosome" evidence=IMP

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IMP;IDA

GO:0007190 "activation of adenylate cyclase activity" evidence=ISO;IDA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=ISO;IDA

GO:0007283 "spermatogenesis" evidence=ISO

GO:0007417 "central nervous system development" evidence=IEP

GO:0008528 "G-protein coupled peptide receptor activity" evidence=IDA

GO:0008584 "male gonad development" evidence=ISO

GO:0008585 "female gonad development" evidence=ISO

GO:0009755 "hormone-mediated signaling pathway" evidence=IDA

GO:0010524 "positive regulation of calcium ion transport into cytosol" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017046 "peptide hormone binding" evidence=IMP;IDA;IPI

GO:0022602 "ovulation cycle process" evidence=ISO

GO:0031233 "intrinsic to external side of plasma membrane" evidence=IDA

GO:0032962 "positive regulation of inositol trisphosphate biosynthetic process" evidence=ISO

GO:0035472 "choriogonadotropin hormone receptor activity" evidence=ISO

GO:0038106 "choriogonadotropin hormone binding" evidence=ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042700 "luteinizing hormone signaling pathway" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0043235 "receptor complex" evidence=IDA

GO:0043950 "positive regulation of cAMP-mediated signaling" evidence=ISO

GO:0046544 "development of secondary male sexual characteristics" evidence=ISO

GO:0046886 "positive regulation of hormone biosynthetic process" evidence=IDA

GO:0050482 "arachidonic acid secretion" evidence=IDA

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEP

GO:0050850 "positive regulation of calcium-mediated signaling" evidence=IDA

GO:0051117 "ATPase binding" evidence=IPI

GO:0051281 "positive regulation of release of sequestered calcium ion into cytosol" evidence=IDA

GO:0060065 "uterus development" evidence=ISO

GO:0071371 "cellular response to gonadotropin stimulus" evidence=ISO

GO:0072520 "seminiferous tubule development" evidence=ISO

GO:0090030 "regulation of steroid hormone biosynthetic process" evidence=ISO

UNIPROTKB|P16235 Lhcgr "Lutropin-choriogonadotropic hormone receptor" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 6.2e-22, P = 6.2e-22
 Identities = 47/82 (57%), Positives = 63/82 (76%)

Query:     1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
             MA+L+  +F C AP++FFA++AA   PLI+VT SKILLV FYP+NSC NP+LYA+ TK +
Sbjct:   575 MAILIFTDFTCMAPISFFAISAAFKVPLITVTNSKILLVLFYPVNSCANPFLYAIFTKAF 634

Query:    61 RRDLVLTLARIGICQERAHKYR 82
             +RD +L L+R G C+ RA  YR
Sbjct:   635 QRDFLLLLSRFGCCKRRAELYR 656

GO:0004964 "luteinizing hormone receptor activity" evidence=IEA

UNIPROTKB|F1SQI7 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Sus scrofa (taxid:9823)]

 Score = 263 (97.6 bits), Expect = 7.8e-22, P = 7.8e-22
 Identities = 52/103 (50%), Positives = 70/103 (67%)

Query:     1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
             MA+L+  +F C AP++FFA++AAL  PLI+VT SK+LLV FYP+NSC NP+LYA+ TK +
Sbjct:   493 MAVLIFTDFTCMAPISFFAISAALKVPLITVTNSKVLLVLFYPVNSCANPFLYAIFTKAF 552

Query:    61 RRDLVLTLARIGICQERAHKYRMISSGL---NGNTGLHSLSSS 100
             RRD  L L++ G C+ +A  YR         NG TG +  S S
Sbjct:   553 RRDFFLLLSKSGCCKHQAELYRRKDFSAYCKNGFTGSNKPSRS 595

GO:0090030 "regulation of steroid hormone biosynthetic process" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0071371 "cellular response to gonadotropin stimulus" evidence=IEA

GO:0060065 "uterus development" evidence=IEA

GO:0046544 "development of secondary male sexual characteristics" evidence=IEA

GO:0043950 "positive regulation of cAMP-mediated signaling" evidence=IEA

GO:0038106 "choriogonadotropin hormone binding" evidence=IEA

GO:0035472 "choriogonadotropin hormone receptor activity" evidence=IEA

GO:0032962 "positive regulation of inositol trisphosphate biosynthetic process" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007190 "activation of adenylate cyclase activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0004964 "luteinizing hormone receptor activity" evidence=IEA

UNIPROTKB|F1MMH0 LHCGR "Lutropin-choriogonadotropic hormone receptor" [Bos taurus (taxid:9913)]

 Score = 263 (97.6 bits), Expect = 8.4e-22, P = 8.4e-22
 Identities = 53/106 (50%), Positives = 72/106 (67%)

Query:     1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
             MA+L+  +F C AP++FFA++AA   PLI+VT SK+LLV FYP+NSC NP+LYA+ TK +
Sbjct:   511 MAVLIFTDFTCMAPISFFAISAAFKVPLITVTNSKVLLVLFYPVNSCANPFLYAIFTKAF 570

Query:    61 RRDLVLTLARIGICQERAHKYRM------ISSGLNGNTGLHSLSSS 100
             +RD  L L++ G C+ RA  YR       IS+  NG TG +  S S
Sbjct:   571 QRDFFLLLSKFGCCKYRAELYRRKDFSAYISNCKNGFTGSNKPSRS 616

GO:0016021 "integral to membrane" evidence=IEA

GO:0004964 "luteinizing hormone receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P30730	LSHR_MOUSE	No assigned EC number	0.5609	0.7321	0.1171	yes	N/A
P16235	LSHR_RAT	No assigned EC number	0.5731	0.7321	0.1171	yes	N/A
P16582	LSHR_PIG	No assigned EC number	0.5609	0.7321	0.1178	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PHA03234	338	DNA packaging protein UL33; Provisional	99.81
KOG4219|consensus	423		99.79
PHA03235	409	DNA packaging protein UL33; Provisional	99.79
PHA02834	323	chemokine receptor-like protein; Provisional	99.73
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.67
KOG4220|consensus	503		99.66
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.54
KOG2087|consensus	363		99.12
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	98.97
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.35
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	97.45
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.06
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	97.04
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	96.49
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	96.32
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	95.42
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	93.86
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	90.64
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	89.74
KOG4564|consensus	473		87.74
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	80.81

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.81  E-value=5.3e-20  Score=125.28  Aligned_cols=76  Identities=14%  Similarity=0.162  Sum_probs=58.7

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCC----CCc----cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhhhh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGY----PLI----SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGI   73 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~----~~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~   73 (112)
                      ++++++|++||+||+++.++..+..    ...    .......++.+++++|||+||+||++.+++||+++++.+++..+
T Consensus       240 ~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~~~  319 (338)
T PHA03234        240 RILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDFFK  319 (338)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHhh
Confidence            5789999999999999987654311    111    12234567888999999999999999999999999999987655


Q ss_pred             hhhc
Q psy11836         74 CQER   77 (112)
Q Consensus        74 ~~~~   77 (112)
                      |...
T Consensus       320 ~~~~  323 (338)
T PHA03234        320 CNLC  323 (338)
T ss_pred             hhhc
Confidence            5533

>KOG4219|consensus

Probab=99.79  E-value=7.3e-20  Score=124.19  Aligned_cols=77  Identities=17%  Similarity=0.440  Sum_probs=63.1

Q ss_pred             CchhhhhHhhchhhHHHHHHHHHhCCCCc---cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhhhhhhhc
Q psy11836          1 MALLVLINFACWAPVTFFALTAALGYPLI---SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQER   77 (112)
Q Consensus         1 l~~iv~~F~icw~Py~i~~l~~~~~~~~~---~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~~~~~   77 (112)
                      +++||+.|.+||+|||++.+......+..   -....+....||+++|+|+||+||+++|++||.++++.++++......
T Consensus       263 liiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp~v~~~  342 (423)
T KOG4219|consen  263 LIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCPFVKGT  342 (423)
T ss_pred             HHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheeeeeccc
Confidence            46789999999999999999876544322   235567788999999999999999999999999999999876533333

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.79  E-value=5.9e-19  Score=122.71  Aligned_cols=70  Identities=14%  Similarity=0.163  Sum_probs=55.0

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCC----Cc----cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYP----LI----SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI   71 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~----~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~   71 (112)
                      ++++++|++||+||+++.++..+...    ..    .......+..+++++|||+||+||++++++||+++++.+++.
T Consensus       247 ~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~  324 (409)
T PHA03235        247 CILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE  324 (409)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence            45677899999999999887654221    10    122345678889999999999999999999999999988754

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.73  E-value=6.9e-18  Score=114.27  Aligned_cols=69  Identities=17%  Similarity=0.376  Sum_probs=54.1

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCc---c------chhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLI---S------VTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~---~------~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      ++++++|++||+||+++.++..+.....   .      ......+..+++++|||+||+||++++++||+++++++++
T Consensus       232 ~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~  309 (323)
T PHA02834        232 LTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCR  309 (323)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHh
Confidence            5688999999999999988765532110   0      0112346778999999999999999999999999998864

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.67  E-value=1.3e-16  Score=111.29  Aligned_cols=71  Identities=21%  Similarity=0.552  Sum_probs=56.2

Q ss_pred             CchhhhhHhhchhhHHHHHHHHHhCCC----------C---ccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHH
Q psy11836          1 MALLVLINFACWAPVTFFALTAALGYP----------L---ISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLT   67 (112)
Q Consensus         1 l~~iv~~F~icw~Py~i~~l~~~~~~~----------~---~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~   67 (112)
                      +++++++|++||+||+++.++..+...          .   ........+...++++|||+||+||++.+++||++++++
T Consensus       315 i~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~  394 (417)
T PHA02638        315 VSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMI  394 (417)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHH
Confidence            357899999999999999888765311          0   012334556778999999999999999999999999998


Q ss_pred             HHhh
Q psy11836         68 LARI   71 (112)
Q Consensus        68 ~~~~   71 (112)
                      +++.
T Consensus       395 ~~~~  398 (417)
T PHA02638        395 FRNI  398 (417)
T ss_pred             HHHh
Confidence            8653

>KOG4220|consensus

Probab=99.66  E-value=2.7e-17  Score=112.30  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=61.4

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      ..|+++|++||+||.|+.++..|-..- -+..++.+.++|.|+||-+||++|++.|+.||+.+++++.|
T Consensus       420 sAILlAFIiTWtPYNImVlv~tFC~~C-iP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~C  487 (503)
T KOG4220|consen  420 SAILLAFILTWTPYNIMVLVNTFCKNC-IPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLC  487 (503)
T ss_pred             HHHHHHHHHHcccceeeeehHhhcccc-cchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhhee
Confidence            568999999999999999998775544 45788899999999999999999999999999999999964

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.54  E-value=9.7e-15  Score=99.13  Aligned_cols=69  Identities=14%  Similarity=0.319  Sum_probs=53.9

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCC----CCc----cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGY----PLI----SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~----~~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      ++++++|++||+||++..++.....    ...    ..+....+..+++.+||++||+||++++++||+++++.++.
T Consensus       247 ~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~  323 (335)
T PHA03087        247 LIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKL  323 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHH
Confidence            5788999999999999887654321    110    12334456778899999999999999999999999999964

>KOG2087|consensus

Probab=99.12  E-value=4.2e-12  Score=85.79  Aligned_cols=81  Identities=51%  Similarity=1.062  Sum_probs=66.0

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhhhhhhhccccc
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKY   81 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~~~~~~~~~   81 (112)
                      ..++..=++||.|.+.+.+...++.+.........+..++.-+|||+||++|++.++.||+.++.++.+...++.+.+..
T Consensus       238 a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~~~k~~~~~~  317 (363)
T KOG2087|consen  238 AFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVGLCKNRASKY  317 (363)
T ss_pred             eEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcchhhhHHHHh
Confidence            34556667999999999999999988877777766777777799999999999999999999999998766555554444


Q ss_pred             c
Q psy11836         82 R   82 (112)
Q Consensus        82 ~   82 (112)
                      +
T Consensus       318 ~  318 (363)
T KOG2087|consen  318 K  318 (363)
T ss_pred             c
Confidence            3

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.97  E-value=9.5e-10  Score=70.82  Aligned_cols=52  Identities=25%  Similarity=0.526  Sum_probs=44.2

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCc-cchhHHHHHHHHhhcccchhHHHH
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLI-SVTKSKILLVFFYPINSCFNPYLY   53 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiiY   53 (112)
                      ++++++|++||+|+.+..++........ .......+..+++++||++||+||
T Consensus       205 ~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY  257 (257)
T PF00001_consen  205 LIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFYISYFLAFLNSCLNPIIY  257 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCCceeHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence            4678899999999999999988866552 356667888899999999999999

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.35  E-value=9.3e-07  Score=59.87  Aligned_cols=69  Identities=12%  Similarity=0.204  Sum_probs=55.2

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCC----ccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPL----ISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      +++++.|+++=+|+-+..++.......    ........+...+..+|++.|++||.+++.+||+++++++++
T Consensus       245 ~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~  317 (318)
T PF10324_consen  245 LFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGC  317 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhcc
Confidence            467789999999999999997752221    112344556777888999999999999999999999999964

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.45  E-value=5.4e-05  Score=50.13  Aligned_cols=67  Identities=15%  Similarity=0.222  Sum_probs=48.8

Q ss_pred             chhhhhHhhchhhHHHHHHHHHh-CCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHH
Q psy11836          2 ALLVLINFACWAPVTFFALTAAL-GYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTL   68 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~-~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~   68 (112)
                      .+++++|+..|.=-.+...+... +.+.........-..++...|.+.|-++|.+.|+|||+++++++
T Consensus       190 ~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~  257 (257)
T PF10320_consen  190 KVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF  257 (257)
T ss_pred             hhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence            46788889999877777665443 32221122234445678899999999999999999999999863

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.06  E-value=0.0045  Score=42.19  Aligned_cols=63  Identities=24%  Similarity=0.283  Sum_probs=47.7

Q ss_pred             hhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          5 VLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         5 v~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      .++|++||.|-.+-.+....+..   +.....+-..++-+.=.+|.++|++-++-.++.+...+.+
T Consensus       208 p~ifiicw~fa~INRI~~~~~~~---~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~  270 (303)
T PF05462_consen  208 PLIFIICWIFATINRIYNFIGKN---PFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILC  270 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            47899999999999998877532   2344444445666677899999999999999988776643

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.04  E-value=0.001  Score=36.12  Aligned_cols=53  Identities=11%  Similarity=0.150  Sum_probs=39.6

Q ss_pred             hhHhhchh-hHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcH
Q psy11836          6 LINFACWA-PVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTK   58 (112)
Q Consensus         6 ~~F~icw~-Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~   58 (112)
                      ++|+++|+ |+.+-.+....+....+..+...++.++..+|..+|-++|++.-+
T Consensus        19 ~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~er   72 (76)
T PF11970_consen   19 LVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRER   72 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecc
Confidence            57999999 988887776644333344566667777777999999999987654

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.49  E-value=0.011  Score=39.72  Aligned_cols=37  Identities=16%  Similarity=0.316  Sum_probs=30.7

Q ss_pred             HHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836         34 SKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus        34 ~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      .+.+-.++.-..|.+||+.--+.|+++|+++++.++|
T Consensus       247 ~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~  283 (283)
T PF10323_consen  247 LRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC  283 (283)
T ss_pred             HHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence            3335556777889999999999999999999998863

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=96.32  E-value=0.016  Score=39.44  Aligned_cols=67  Identities=7%  Similarity=-0.024  Sum_probs=50.0

Q ss_pred             hhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          4 LVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         4 iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      +++.|++-+..|.+..++...............+...+.++.++..|+|-.+.|+++|+++++.+.+
T Consensus       235 ~~~sfl~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~  301 (303)
T PF05296_consen  235 TMISFLILYIIYFLSLILSFLSFFFPENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWC  301 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhh
Confidence            4567778888888776664332221122445567777888999999999999999999999999864

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=95.42  E-value=0.02  Score=39.28  Aligned_cols=39  Identities=15%  Similarity=0.220  Sum_probs=32.9

Q ss_pred             chhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHH
Q psy11836         31 VTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA   69 (112)
Q Consensus        31 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~   69 (112)
                      +++...+..+.=-.++..+|+||-.+|+..|+++++.++
T Consensus       268 p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~  306 (313)
T PF10321_consen  268 PPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLG  306 (313)
T ss_pred             cHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHc
Confidence            355556666666789999999999999999999999995

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=93.86  E-value=0.1  Score=36.64  Aligned_cols=20  Identities=20%  Similarity=0.544  Sum_probs=16.4

Q ss_pred             chhhhhHhhchhhHHHHHHH
Q psy11836          2 ALLVLINFACWAPVTFFALT   21 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~   21 (112)
                      +.|+++|.+||+|..+=-++
T Consensus       247 f~I~lVF~iCWlpNIINg~L  266 (405)
T PF02101_consen  247 FKIMLVFYICWLPNIINGSL  266 (405)
T ss_pred             HHHHHHHHHHhhhhhHhHHH
Confidence            45899999999999886554

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=90.64  E-value=0.45  Score=32.15  Aligned_cols=55  Identities=9%  Similarity=0.190  Sum_probs=38.3

Q ss_pred             hchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHH
Q psy11836         10 ACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVL   66 (112)
Q Consensus        10 icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~   66 (112)
                      ++..|-.+..++..++...  ......+...++.+-+.+||+++.+.=+.||++++|
T Consensus       238 ~~~~p~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r  292 (292)
T PF10317_consen  238 FFYIPGVIIYFLSQFTGYE--HPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR  292 (292)
T ss_pred             HHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence            3444444444544444432  355566666677788999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=89.74  E-value=1.4  Score=29.71  Aligned_cols=60  Identities=15%  Similarity=0.279  Sum_probs=44.5

Q ss_pred             HhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          8 NFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         8 F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      +++.-.|..++.+....+...   +....+..++...+..+.-++..+.++.+|+.++++++|
T Consensus       243 ~~~l~~P~~~~~~~~~~~~~~---q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~  302 (302)
T PF10318_consen  243 FIFLFIPLIYFIISIIFGYYN---QALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC  302 (302)
T ss_pred             HHHHhhhHHHHHHHHhccccc---cccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence            345566888887766655433   334445556666899999999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>KOG4564|consensus

Probab=87.74  E-value=0.95  Score=32.95  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=24.5

Q ss_pred             HhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836         41 FYPINSCFNPYLYALLTKHYRRDLVLTLARI   71 (112)
Q Consensus        41 l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~   71 (112)
                      |..+.-.+=-++|+|.|.++|.++||.+.+.
T Consensus       390 L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~  420 (473)
T KOG4564|consen  390 LGSFQGFFVAVLYCFLNGEVQAELRRKWSRW  420 (473)
T ss_pred             HHhccchheehheeecCHHHHHHHHHHHHhc
Confidence            4444445567899999999999999999764

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=80.81  E-value=1  Score=30.00  Aligned_cols=24  Identities=8%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             cccchhHHHHHHhcHHHHHHHHHH
Q psy11836         44 INSCFNPYLYALLTKHYRRDLVLT   67 (112)
Q Consensus        44 ~ns~~NPiiY~~~~~~fR~~~~~~   67 (112)
                      +.=++|++|+...|+|+|+.+++.
T Consensus       249 ~~h~~DG~i~l~fN~~~r~~~~~~  272 (274)
T PF10328_consen  249 LVHALDGLIMLIFNSEIRRKIRKK  272 (274)
T ss_pred             HHHHhcceeEeEEcHHHHHHHHhc
Confidence            334579999999999999998764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		3e-04

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 10  ACWAPVTFFALTAALGYPLISVTKSKIL--LVFFYPINSCFNPYLYALLTKHYR 61
            CW PV  F L   LG    S T   IL        +NSC NP LYA L ++++
Sbjct: 348 GCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFK 401

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-07
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	1e-06
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	4e-06
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	5e-06
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	5e-06
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-05
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	2e-05
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	3e-05
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	3e-05
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	6e-05
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	7e-05
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	2e-04
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	3e-04

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 1   MALLVLINF-ACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKH 59
           ++++++  F   W+P    AL A  G        +  L V F   ++  NP +Y++    
Sbjct: 262 ISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPK 321

Query: 60  YRRDLVLTLARIGICQERAHK 80
           +R  +  T   +  C +   K
Sbjct: 322 FREAISQTFPWVLTCCQFDDK 342

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 8/109 (7%)

Query: 1   MALLVLINFA-CWAPVTFFALTAALGYPLISVTKSKILLVFFYPI---NSCFNPYLYALL 56
           M ++V+  FA CW P   F L   +   L      + + +    +   ++ +NP +Y  L
Sbjct: 249 MMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCL 308

Query: 57  TKHYRRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHSLSSSRKQSH 105
              +R            C             +     L +  S  K S 
Sbjct: 309 NDRFRLGFKHAFR----CCPFISAGDYEGLEMKSTRYLQTQGSVYKVSR 353

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           + +++     CW P     +   +   LI      +L    Y +NS FNP +Y   +  +
Sbjct: 424 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGY-VNSGFNPLIYC-RSPDF 481

Query: 61  RRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHS 96
           R         +   +  + K        NGNTG  S
Sbjct: 482 RI----AFQELLCLRRSSLKAYGNGYSSNGNTGEQS 513

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 1   MALLVLINFA-CWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKH 59
           M ++++I F  CW P    A                 +  FF   ++ +NP +Y ++ K 
Sbjct: 254 MVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQ 313

Query: 60  YRRDLVLTL 68
           +R  +V TL
Sbjct: 314 FRNCMVTTL 322

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           + +++ +   CW P     +       L+            Y  NS  NP +Y   +  +
Sbjct: 234 LGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGY-ANSAMNPIIYC-RSPDF 291

Query: 61  RR--DLVLTLARIGICQERAHKY 81
           R+    +L   R    +   H +
Sbjct: 292 RKAFKRLLAFPRKADRRLHHHHH 314

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           + +++     CW P     +   +   LI      +L    Y +NS FNP +Y   +  +
Sbjct: 410 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGY-VNSGFNPLIYC-RSPDF 467

Query: 61  RRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHS 96
           R         +   +  + K        NGNTG  S
Sbjct: 468 RI----AFQELLCLRRSSLKAYGNGYSSNGNTGEQS 499

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 1   MALLVLINFACWAPVTFFALTAAL--GYPLISVTKSKILLVFFYPINSCFNPYLYALLTK 58
           +A++V +   CW P+                 +    + +V  +  NS  NP++YA   +
Sbjct: 397 LAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSH-TNSVVNPFIYAYRIR 455

Query: 59  HYRRDLVLTLARIGICQERAHKYRMISSGLNGN 91
            +R+     +    + Q+   K        + +
Sbjct: 456 EFRQTFRKIIRSHVLRQQEPFKAHHHHHHHHHH 488

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 9/73 (12%)

Query: 1   MALLVLINFACWAP---VTFFALTAALGYPLISVTKSKILLVFFYP------INSCFNPY 51
             +L+L  FACW P            L            +  +          + C NP 
Sbjct: 415 TVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPI 474

Query: 52  LYALLTKHYRRDL 64
           LYA L   ++   
Sbjct: 475 LYAFLGAKFKTSA 487

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 10  ACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA 69
            CW P   F +  A      +       +   Y INS  NP +Y L  +++++    T  
Sbjct: 384 LCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGY-INSTLNPLIYPLCNENFKK----TFK 438

Query: 70  RIGICQERAHKYR 82
           RI   +   + Y 
Sbjct: 439 RILHIRSGENLYF 451

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 3   LLVLINFACWAPVTFFALTAALGYPLIS--VTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           ++V +   CW P+  + +  AL     +   T S    +     NSC NP LYA L +++
Sbjct: 387 VVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENF 446

Query: 61  RRDLVLTLARIGICQER 77
           +R             E+
Sbjct: 447 KRCFREFCIPTSSTIEQ 463

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           +  ++L     WAP     L      P I  T   I     Y INS  NP  YAL    +
Sbjct: 390 ILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCY-INSTINPACYALCNATF 448

Query: 61  RR 62
           ++
Sbjct: 449 KK 450

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYP---INSCFNPYLYALLT 57
           +A++V +   CW P     +     +          L+         NS  NP++YA   
Sbjct: 356 LAIIVGLFALCWLP--LHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRI 413

Query: 58  KHYRRDLVLTLARIGICQERAHKYR 82
           + +R+     +    + Q+   K  
Sbjct: 414 REFRQTFRKIIRSHVLRQQEPFKAH 438

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.86
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.81
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.78
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.78
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.78
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.78
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.77
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.76
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.75
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.75
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.74
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.74
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.73
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.72
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.67
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.67
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.65
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.62
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	99.29
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	98.64
2ket_A	27	Cathelicidin-6; antimicrobial peptide, antibiotic,	85.5

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.86  E-value=2.2e-23  Score=146.62  Aligned_cols=71  Identities=23%  Similarity=0.274  Sum_probs=52.4

Q ss_pred             CchhhhhHhhchhhHHHHHHHHHhCCCCcc-------chhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836          1 MALLVLINFACWAPVTFFALTAALGYPLIS-------VTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI   71 (112)
Q Consensus         1 l~~iv~~F~icw~Py~i~~l~~~~~~~~~~-------~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~   71 (112)
                      +++|+++|++||+||+++.++..+......       ..+...++.+|+|+|||+||+||+++|++||++|+++++|+
T Consensus       411 L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~  488 (510)
T 4grv_A          411 ARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACL  488 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Confidence            357899999999999999999887544321       12345677889999999999999999999999999999753

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.81  E-value=2.2e-20  Score=130.93  Aligned_cols=68  Identities=22%  Similarity=0.380  Sum_probs=58.8

Q ss_pred             CchhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         1 l~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      +++|+++|++||+||+++.++..+.... .....+.+..+|+++||++||+||++ +++||+++++++++
T Consensus       410 l~ivv~~F~icWlP~~i~~l~~~~~~~~-~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~~  477 (500)
T 2rh1_A          410 LGIIMGTFTLCWLPFFIVNIVHVIQDNL-IRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCL  477 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTS-SCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHhh
Confidence            3679999999999999999998876432 34667788899999999999999996 99999999999953

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.78  E-value=3e-19  Score=123.74  Aligned_cols=71  Identities=18%  Similarity=0.318  Sum_probs=61.2

Q ss_pred             CchhhhhHhhchhhHHHHHHHHHhCCCC-ccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836          1 MALLVLINFACWAPVTFFALTAALGYPL-ISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI   71 (112)
Q Consensus         1 l~~iv~~F~icw~Py~i~~l~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~   71 (112)
                      +++|+++|++||+||+++.++..+.... ........+..+++++||++||+||++++++||++++++++++
T Consensus       397 l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~~~~  468 (488)
T 3eml_A          397 LAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSH  468 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHHhhc
Confidence            3578999999999999999998876542 3345667788899999999999999999999999999999864

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.78  E-value=3.6e-19  Score=122.32  Aligned_cols=70  Identities=19%  Similarity=0.306  Sum_probs=60.6

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCC-CccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYP-LISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI   71 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~-~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~   71 (112)
                      ++++++|++||+||+++.++..+... .........+..+++++||++||+||++++++||+++++++++.
T Consensus       357 ~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~  427 (447)
T 4eiy_A          357 AIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSH  427 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHH
Confidence            57899999999999999999887554 23345667788899999999999999999999999999999764

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.78  E-value=3.9e-19  Score=116.92  Aligned_cols=69  Identities=25%  Similarity=0.462  Sum_probs=57.8

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCccc---------hhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLISV---------TKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~---------~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      ++++++|++||+||+++.++..+.......         .....++.+++++||++||+||++++++||++++++++|
T Consensus       217 ~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~c  294 (296)
T 2lnl_A          217 FAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAM  294 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred             HHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence            568899999999999999998875543221         234557788999999999999999999999999999975

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.78  E-value=7.5e-20  Score=126.88  Aligned_cols=69  Identities=19%  Similarity=0.294  Sum_probs=48.9

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCcc----chhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLIS----VTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~----~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      ++|+++|++||+||+++.++..+......    ......++.+|+++||++||+||++++++||++++++++|
T Consensus       393 ~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~~ll~~  465 (484)
T 3vw7_A          393 AAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCC  465 (484)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC----------
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHhh
Confidence            67899999999999999999865432222    2345567888999999999999999999999999999864

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.77  E-value=1.1e-19  Score=128.08  Aligned_cols=69  Identities=23%  Similarity=0.405  Sum_probs=58.2

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCc-cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLI-SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      ++++++|++||+||+++.++..+..... .......+..+++++|||+||+||++++++||+++++++++
T Consensus       424 ~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~  493 (520)
T 3v2y_A          424 IIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGR  493 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCTTTCSTTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            5789999999999999999988755322 33445567788999999999999999999999999999864

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.76  E-value=8.8e-19  Score=121.42  Aligned_cols=69  Identities=16%  Similarity=0.293  Sum_probs=61.2

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      ++++++|++||+||+++.++..+............+..+|+++||++||+||++++++||++++++++|
T Consensus       404 ~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c  472 (481)
T 3pbl_A          404 AIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC  472 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHhc
Confidence            578999999999999999998876654455677888899999999999999999999999999999963

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.75  E-value=4.5e-18  Score=114.35  Aligned_cols=69  Identities=17%  Similarity=0.394  Sum_probs=57.6

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCc---cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLI---SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~---~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      ++++++|++||+||+++.++..+.....   .......+..+++++||++||+||++.+++||+++++++++
T Consensus       251 ~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~  322 (364)
T 2ks9_A          251 IVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRC  322 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence            5688999999999999999887754321   13445667778999999999999999999999999999975

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.75  E-value=1.6e-18  Score=119.66  Aligned_cols=68  Identities=22%  Similarity=0.323  Sum_probs=59.9

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      ++|+++|++||+||+++.++..+.... .......+..+++++||++||+||++++++||++++++++|
T Consensus       391 ~~iv~~F~icw~P~~i~~~~~~~~~~~-~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c  458 (467)
T 3uon_A          391 LAILLAFIITWAPYNVMVLINTFCAPC-IPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMC  458 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSTT-SCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHhh
Confidence            578999999999999999998886654 34677788889999999999999999999999999999964

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.74  E-value=1.9e-18  Score=119.05  Aligned_cols=68  Identities=26%  Similarity=0.432  Sum_probs=56.8

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCC--ccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHH
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPL--ISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA   69 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~--~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~   69 (112)
                      ++|+++|++||+||+++.++..+....  ........+..+|+++||++||+||++++++||++++++++
T Consensus       386 ~~v~~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc~  455 (464)
T 4dkl_A          386 LVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCI  455 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHhc
Confidence            578999999999999999998775422  22344456777899999999999999999999999999864

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.74  E-value=1.4e-17  Score=111.03  Aligned_cols=68  Identities=22%  Similarity=0.379  Sum_probs=57.8

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHH
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA   69 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~   69 (112)
                      ++++++|++||+||+++.++...............+..+++++||++||+||++++++||++++++++
T Consensus       256 ~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~  323 (349)
T 1u19_A          256 IIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC  323 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhHhheecCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhc
Confidence            46788999999999999888777554333455667788899999999999999999999999999985

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.73  E-value=3.4e-18  Score=117.60  Aligned_cols=69  Identities=19%  Similarity=0.400  Sum_probs=59.4

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI   71 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~   71 (112)
                      ++|+++|++||+||+++.++..+..... ......+..+++++||++||+||++++++||+++++++++.
T Consensus       376 ~~vv~~f~icwlP~~i~~l~~~~~~~~~-~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~  444 (452)
T 3rze_A          376 GFIMAAFILCWIPYFIFFMVIAFCKNCC-NEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIR  444 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCS-CTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHHhc
Confidence            5789999999999999999988755543 35566688899999999999999999999999999999753

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.72  E-value=5.1e-18  Score=117.17  Aligned_cols=69  Identities=22%  Similarity=0.348  Sum_probs=59.2

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      ++++++|++||+|++++.++..+............+..+++++||++||+||++++++||+++++++++
T Consensus       264 ~~iv~~F~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~  332 (448)
T 2z73_A          264 IVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPW  332 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHH
Confidence            567899999999999999998876543344566677888999999999999999999999999999864

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.67  E-value=8.2e-17  Score=105.83  Aligned_cols=67  Identities=18%  Similarity=0.335  Sum_probs=57.1

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR   70 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~   70 (112)
                      ++++++|++||+||+++.++..++... ..+....+..+++++||++||+||+ ++++||+++++++++
T Consensus       235 ~~~~~~f~i~~~P~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~  301 (315)
T 4amj_A          235 GIIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF  301 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTS-SCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCC
Confidence            467888999999999999998876554 3456667778899999999999999 999999999999963

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.67  E-value=1.6e-18  Score=120.72  Aligned_cols=71  Identities=24%  Similarity=0.350  Sum_probs=57.2

Q ss_pred             CchhhhhHhhchhhHHHHHHHHHhCCCC---------ccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836          1 MALLVLINFACWAPVTFFALTAALGYPL---------ISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI   71 (112)
Q Consensus         1 l~~iv~~F~icw~Py~i~~l~~~~~~~~---------~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~   71 (112)
                      +++|+++|++||+||+++.++..+....         .....+..++.+|+++||++||+||++++++||++++++++++
T Consensus       415 l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~  494 (502)
T 3odu_A          415 TVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSG  494 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCCCCHHHHHSSC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHHHHHHHHhccC
Confidence            3578999999999999999987653111         1223345578889999999999999999999999999999753

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.62  E-value=1.8e-16  Score=111.42  Aligned_cols=66  Identities=23%  Similarity=0.388  Sum_probs=56.6

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHH
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA   69 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~   69 (112)
                      ++++++|++||+||+++.++..+.... .......+..+++++||++||+||+ ++++||++++++++
T Consensus       425 ~~iv~~F~lcwlP~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~  490 (514)
T 3sn6_R          425 GIIMGTFTLCWLPFFIVNIVHVIQDNL-IRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLC  490 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTS-SCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhC
Confidence            567888999999999999998875543 3355677888899999999999999 99999999999885

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=99.29  E-value=9.1e-14  Score=66.08  Aligned_cols=35  Identities=26%  Similarity=0.383  Sum_probs=31.4

Q ss_pred             HHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHH
Q psy11836         35 KILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA   69 (112)
Q Consensus        35 ~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~   69 (112)
                      +.++.+++++||++||+||++.+++||++++++++
T Consensus         3 ~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~   37 (40)
T 2koe_A            3 FAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFP   37 (40)
T ss_dssp             HHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhh
Confidence            45677899999999999999999999999988764

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=98.64  E-value=1.9e-09  Score=48.74  Aligned_cols=22  Identities=23%  Similarity=0.587  Sum_probs=18.6

Q ss_pred             chhhhhHhhchhhHHHHHHHHH
Q psy11836          2 ALLVLINFACWAPVTFFALTAA   23 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~   23 (112)
                      ++++++|++||+||++..++..
T Consensus         9 ~~vv~~F~icW~P~~i~~~~~~   30 (33)
T 2ki9_A            9 GLVLAVLLICWFPVLALMAHSL   30 (33)
T ss_dssp             HHHHHHHTTTSSHHHHHHTTTT
T ss_pred             HHHHHHHHHHHhHHHHHHHHHH
Confidence            5688999999999999877643

>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}

Probab=85.50  E-value=0.73  Score=18.41  Aligned_cols=14  Identities=14%  Similarity=0.496  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHhh
Q psy11836         58 KHYRRDLVLTLARI   71 (112)
Q Consensus        58 ~~fR~~~~~~~~~~   71 (112)
                      +.||+.++++++..
T Consensus         4 krfrkkfkklfkkl   17 (27)
T 2ket_A            4 KRFRKKFKKLFKKL   17 (27)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            68999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	5e-08

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 5e-08
 Identities = 15/68 (22%), Positives = 28/68 (41%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           + ++V+    CW P    A                 +  FF   ++ +NP +Y ++ K +
Sbjct: 254 VIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQF 313

Query: 61  RRDLVLTL 68
           R  +V TL
Sbjct: 314 RNCMVTTL 321

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.76

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=1.7e-18  Score=114.14  Aligned_cols=68  Identities=22%  Similarity=0.379  Sum_probs=59.7

Q ss_pred             chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHH
Q psy11836          2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA   69 (112)
Q Consensus         2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~   69 (112)
                      ++++++|++||+||.++.++...............+..+++++||++||+||++++++||++++++++
T Consensus       255 ~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~  322 (348)
T d1u19a_         255 IIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC  322 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHT
T ss_pred             EEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhC
Confidence            57889999999999999988777665555566777888999999999999999999999999999985