Psyllid ID: psy11857

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MTLSMSSTLSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQIKKLR
Secondary Structure (PSIPRED)
cccccccccccccHHHHcccccccccccccEEEcccccccccccccccEEccccHHHHHHHHHHHHHcccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHccccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHEccccEEEEEEEEEHHHccHHHcEccHHHHHcccccccccccccccHHHHHHHHHccHHcccccccEEcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccEHHcc
Coil and Loop (DISEMBL)
mtlsmsstlstnSTLVETVSINYedfnesfltcgtclcmydggehtpkllpcshtvclHCLSRIAasqtretgtlrcpicreqitiprggvaalppsFLVNQLLDLMSRQrrhiipkcsthnsqikklr
Flexible Loop (DISEMBL)
mtlsmsstlstnsTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAasqtretgtlrcpICREQITIPRGGVAALPPSFLVNQLLDLMSRQRrhiipkcsthnsqikklr
Low Complexity Region (SEG)
mtlsmsstlstnstlvetvsINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQIKKLR
Disordered region (IsUnstruct)
*************TLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHII**************
Disordered Region (DISOPRED)
******************************LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL***********************
Disordered Region (DISEMBL)
************STLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCS**********
Disordered Region (DISPRO)
**********TNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKC***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTLSMSSTLSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQIKKLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q80VI1	734	E3 ubiquitin-protein liga	yes	N/A	0.581	0.102	0.440	9e-12
E1BD59	732	E3 ubiquitin-protein liga	yes	N/A	0.581	0.102	0.440	1e-11
Q9BRZ2	755	E3 ubiquitin-protein liga	yes	N/A	0.581	0.099	0.416	7e-11
O75382	744	Tripartite motif-containi	no	N/A	0.612	0.106	0.360	8e-11
F7H9X2	744	Tripartite motif-containi	no	N/A	0.589	0.102	0.385	2e-10
D2GXS7	744	Tripartite motif-containi	no	N/A	0.589	0.102	0.385	2e-10
A4IF63	744	Tripartite motif-containi	no	N/A	0.589	0.102	0.385	2e-10
Q9C040	744	Tripartite motif-containi	no	N/A	0.589	0.102	0.385	2e-10
Q9ESN6	744	Tripartite motif-containi	no	N/A	0.589	0.102	0.385	2e-10
D3ZQG6	744	Tripartite motif-containi	no	N/A	0.589	0.102	0.385	2e-10

>sp|Q80VI1|TRI56_MOUSE E3 ubiquitin-protein ligase TRIM56 OS=Mus musculus GN=Trim56 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 9/84 (10%)

Query: 24  EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
           E  +  FL C  CL       HTPK LPC HT C  CL+++        G +RCP CRE 
Sbjct: 12  EALSSDFLACKICLEQL----HTPKTLPCLHTYCQDCLAQLDIG-----GQVRCPECREI 62

Query: 84  ITIPRGGVAALPPSFLVNQLLDLM 107
           + +P  GVAA   +F VN LLDL+
Sbjct: 63  VPVPAEGVAAFKTNFFVNGLLDLV 86

E3 ubiquitin-protein ligase that mediates 'Lys-63'-linked polyubiquitination of TMEM173/STING, thereby playing a key role in innate immunity. TMEM173/STING 'Lys-63'-linked ubiquitination activates the production of type I interferon IFN-beta following detection of pathogen- and host-derived double-stranded DNA.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|E1BD59|TRI56_BOVIN E3 ubiquitin-protein ligase TRIM56 OS=Bos taurus GN=TRIM56 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 45/84 (53%), Gaps = 9/84 (10%)

Query: 24  EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
           E  +  FL C  CL         PK LPC HT C  CL+++A     E   LRCP CRE 
Sbjct: 12  EALSSDFLACKICLEQL----RVPKTLPCLHTYCQDCLAQLA-----EGSRLRCPECRES 62

Query: 84  ITIPRGGVAALPPSFLVNQLLDLM 107
           + +P  GVAA   +F VN LLDL+
Sbjct: 63  VPVPPAGVAAFKTNFFVNGLLDLV 86

E3 ubiquitin-protein ligase that mediates 'Lys-63'-linked polyubiquitination of TMEM173/STING, thereby playing a key role in innate immunity. TMEM173/STING 'Lys-63'-linked ubiquitination activates the production of type I interferon IFN-beta following detection of pathogen- and host-derived double-stranded DNA.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9BRZ2|TRI56_HUMAN E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1 SV=3

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 9/84 (10%)

Query: 24  EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
           E  +  FL C  CL         PK LPC HT C  CL+++A     + G +RCP CRE 
Sbjct: 12  EALSSDFLACKICLEQL----RAPKTLPCLHTYCQDCLAQLA-----DGGRVRCPECRET 62

Query: 84  ITIPRGGVAALPPSFLVNQLLDLM 107
           + +P  GVA+   +F VN LLDL+
Sbjct: 63  VPVPPEGVASFKTNFFVNGLLDLV 86

E3 ubiquitin-protein ligase that mediates 'Lys-63'-linked polyubiquitination of TMEM173/STING, thereby playing a key role in innate immunity. TMEM173/STING 'Lys-63'-linked ubiquitination activates the production of type I interferon IFN-beta following detection of pathogen- and host-derived double-stranded DNA.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O75382|TRIM3_HUMAN Tripartite motif-containing protein 3 OS=Homo sapiens GN=TRIM3 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 24  EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
           +  ++ FL C  CL  Y      PK+LPC HT C  CL     +Q+    TL CP+CR+ 
Sbjct: 13  QPMDKQFLVCSICLDRY----QCPKVLPCLHTFCERCLQNYIPAQSL---TLSCPVCRQT 65

Query: 84  ITIPRGGVAALPPSFLVNQLLDLMSR 109
             +P  GV+AL  +F ++ L++ M +
Sbjct: 66  SILPEQGVSALQNNFFISSLMEAMQQ 91

Probably involved in vesicular trafficking via its association with the CART complex. The CART complex is necessary for efficient transferrin receptor recycling but not for EGFR degradation.

Homo sapiens (taxid: 9606)

>sp|F7H9X2|TRIM2_CALJA Tripartite motif-containing protein 2 OS=Callithrix jacchus GN=TRIM2 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 27  NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
           ++ FL C  CL  Y      PK+LPC HT C  CL     + +    TL CP+CR+   +
Sbjct: 17  DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69

Query: 87  PRGGVAALPPSFLVNQLLDLMSR 109
           P  GVAAL  +F +  L+D++ R
Sbjct: 70  PEKGVAALQNNFFITNLMDVLQR 92

E3 ubiquitin-protein ligase that mediates the ubiquitination of phosphorylated BCL2L11. Also mediates the UBE2D1-dependent ubiquitination of NEFL. Plays a neuroprotective function. May play a role in neuronal rapid ischemic tolerance.

Callithrix jacchus (taxid: 9483)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|D2GXS7|TRIM2_AILME Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca GN=TRIM2 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 27  NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
           ++ FL C  CL  Y      PK+LPC HT C  CL     + +    TL CP+CR+   +
Sbjct: 17  DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69

Query: 87  PRGGVAALPPSFLVNQLLDLMSR 109
           P  GVAAL  +F +  L+D++ R
Sbjct: 70  PEKGVAALQNNFFITNLMDVLQR 92

E3 ubiquitin-protein ligase that mediates the ubiquitination of phosphorylated BCL2L11. Also mediates the UBE2D1-dependent ubiquitination of NEFL. Plays a neuroprotective function. May play a role in neuronal rapid ischemic tolerance.

Ailuropoda melanoleuca (taxid: 9646)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A4IF63|TRIM2_BOVIN Tripartite motif-containing protein 2 OS=Bos taurus GN=TRIM2 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 27  NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
           ++ FL C  CL  Y      PK+LPC HT C  CL     + +    TL CP+CR+   +
Sbjct: 17  DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69

Query: 87  PRGGVAALPPSFLVNQLLDLMSR 109
           P  GVAAL  +F +  L+D++ R
Sbjct: 70  PEKGVAALQNNFFITNLMDVLQR 92

E3 ubiquitin-protein ligase that mediates the ubiquitination of phosphorylated BCL2L11. Also mediates the UBE2D1-dependent ubiquitination of NEFL. Plays a neuroprotective function. May play a role in neuronal rapid ischemic tolerance.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C040|TRIM2_HUMAN Tripartite motif-containing protein 2 OS=Homo sapiens GN=TRIM2 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 27  NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
           ++ FL C  CL  Y      PK+LPC HT C  CL     + +    TL CP+CR+   +
Sbjct: 17  DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69

Query: 87  PRGGVAALPPSFLVNQLLDLMSR 109
           P  GVAAL  +F +  L+D++ R
Sbjct: 70  PEKGVAALQNNFFITNLMDVLQR 92

UBE2D1-dependent E3 ubiquitin-protein ligase that mediates the ubiquitination of NEFL and of phosphorylated BCL2L11 (By similarity). Plays a neuroprotective function (By similarity). May play a role in neuronal rapid ischemic tolerance.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ESN6|TRIM2_MOUSE Tripartite motif-containing protein 2 OS=Mus musculus GN=Trim2 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 27  NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
           ++ FL C  CL  Y      PK+LPC HT C  CL     + +    TL CP+CR+   +
Sbjct: 17  DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69

Query: 87  PRGGVAALPPSFLVNQLLDLMSR 109
           P  GVAAL  +F +  L+D++ R
Sbjct: 70  PEKGVAALQNNFFITNLMDVLQR 92

UBE2D1-dependent E3 ubiquitin-protein ligase that mediates the ubiquitination of NEFL and of phosphorylated BCL2L11. Plays a neuroprotective function. May play a role in neuronal rapid ischemic tolerance.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|D3ZQG6|TRIM2_RAT Tripartite motif-containing protein 2 OS=Rattus norvegicus GN=Trim2 PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 27  NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
           ++ FL C  CL  Y      PK+LPC HT C  CL     + +    TL CP+CR+   +
Sbjct: 17  DKQFLICSICLERY----KNPKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69

Query: 87  PRGGVAALPPSFLVNQLLDLMSR 109
           P  GVAAL  +F +  L+D++ R
Sbjct: 70  PEKGVAALQNNFFITNLMDVLQR 92

E3 ubiquitin-protein ligase that mediates the ubiquitination of phosphorylated BCL2L11. Also mediates the UBE2D1-dependent ubiquitination of NEFL (By similarity). Plays a neuroprotective function (By similarity). May play a role in neuronal rapid ischemic tolerance.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
340713996	702	PREDICTED: tripartite motif-containing p	0.899	0.165	0.879	4e-56
350400611	932	PREDICTED: tripartite motif-containing p	0.899	0.124	0.879	5e-56
340713994	927	PREDICTED: tripartite motif-containing p	0.899	0.125	0.879	5e-56
328780417	927	PREDICTED: tripartite motif-containing p	0.899	0.125	0.870	2e-55
380025130	927	PREDICTED: LOW QUALITY PROTEIN: triparti	0.899	0.125	0.870	2e-55
383862071	936	PREDICTED: tripartite motif-containing p	0.899	0.123	0.870	3e-55
91092518	685	PREDICTED: similar to NHL (ring finger b	0.899	0.169	0.862	4e-55
307203608	987	Chymotrypsin-1 [Harpegnathos saltator]	0.899	0.117	0.862	1e-54
307180992	687	Tripartite motif-containing protein 2 [C	0.899	0.168	0.862	1e-54
242022977	687	RING finger-containing protein, putative	0.899	0.168	0.853	2e-54

>gi|340713996|ref|XP_003395519.1| PREDICTED: tripartite motif-containing protein 2-like isoform 2 [Bombus terrestris]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 102/116 (87%), Positives = 108/116 (93%)

Query: 9   LSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ 68
           +S +S LVETVSINYEDFNESFLTCGTCLC+YDGGEHTPKLLPCSHTVCLHCL+RIAASQ
Sbjct: 17  VSMSSMLVETVSINYEDFNESFLTCGTCLCVYDGGEHTPKLLPCSHTVCLHCLTRIAASQ 76

Query: 69  TRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
           TRETG  RCPICRE ITIPRGGVAALPPSFLVNQLLDLMSRQRR +IPKCS H +Q
Sbjct: 77  TRETGAFRCPICRELITIPRGGVAALPPSFLVNQLLDLMSRQRREVIPKCSVHINQ 132

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400611|ref|XP_003485898.1| PREDICTED: tripartite motif-containing protein 2-like [Bombus impatiens]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/116 (87%), Positives = 108/116 (93%)

Query: 9   LSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ 68
           +S +S LVETVSINYEDFNESFLTCGTCLC+YDGGEHTPKLLPCSHTVCLHCL+RIAASQ
Sbjct: 247 VSMSSMLVETVSINYEDFNESFLTCGTCLCVYDGGEHTPKLLPCSHTVCLHCLTRIAASQ 306

Query: 69  TRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
           TRETG  RCPICRE ITIPRGGVAALPPSFLVNQLLDLMSRQRR +IPKCS H +Q
Sbjct: 307 TRETGAFRCPICRELITIPRGGVAALPPSFLVNQLLDLMSRQRREVIPKCSVHINQ 362

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713994|ref|XP_003395518.1| PREDICTED: tripartite motif-containing protein 2-like isoform 1 [Bombus terrestris]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/116 (87%), Positives = 108/116 (93%)

Query: 9   LSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ 68
           +S +S LVETVSINYEDFNESFLTCGTCLC+YDGGEHTPKLLPCSHTVCLHCL+RIAASQ
Sbjct: 242 VSMSSMLVETVSINYEDFNESFLTCGTCLCVYDGGEHTPKLLPCSHTVCLHCLTRIAASQ 301

Query: 69  TRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
           TRETG  RCPICRE ITIPRGGVAALPPSFLVNQLLDLMSRQRR +IPKCS H +Q
Sbjct: 302 TRETGAFRCPICRELITIPRGGVAALPPSFLVNQLLDLMSRQRREVIPKCSVHINQ 357

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780417|ref|XP_392730.4| PREDICTED: tripartite motif-containing protein 2-like [Apis mellifera]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/116 (87%), Positives = 107/116 (92%)

Query: 9   LSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ 68
           +S +S LVETVSINYEDFNESFLTCGTCLC+YDGGEHTPKLLPCSHTVCLHCL+RIAASQ
Sbjct: 242 VSMSSMLVETVSINYEDFNESFLTCGTCLCVYDGGEHTPKLLPCSHTVCLHCLTRIAASQ 301

Query: 69  TRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
           TRETG  RCPICRE ITIPRGGV ALPPSFLVNQLLDLMSRQRR +IPKCS H +Q
Sbjct: 302 TRETGAFRCPICRELITIPRGGVPALPPSFLVNQLLDLMSRQRREVIPKCSVHINQ 357

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025130|ref|XP_003696332.1| PREDICTED: LOW QUALITY PROTEIN: tripartite motif-containing protein 2-like [Apis florea]

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/116 (87%), Positives = 107/116 (92%)

Query: 9   LSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ 68
           +S +S LVETVSINYEDFNESFLTCGTCLC+YDGGEHTPKLLPCSHTVCLHCL+RIAASQ
Sbjct: 242 VSMSSMLVETVSINYEDFNESFLTCGTCLCVYDGGEHTPKLLPCSHTVCLHCLTRIAASQ 301

Query: 69  TRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
           TRETG  RCPICRE ITIPRGGV ALPPSFLVNQLLDLMSRQRR +IPKCS H +Q
Sbjct: 302 TRETGAFRCPICRELITIPRGGVPALPPSFLVNQLLDLMSRQRREVIPKCSVHINQ 357

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862071|ref|XP_003706507.1| PREDICTED: tripartite motif-containing protein 2-like [Megachile rotundata]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/116 (87%), Positives = 107/116 (92%)

Query: 9   LSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ 68
           +S +S LVETVSINYEDFNESFLTCGTCLC+YDGGEHTPKLLPCSHTVCLHCL+RIAASQ
Sbjct: 251 VSMSSMLVETVSINYEDFNESFLTCGTCLCVYDGGEHTPKLLPCSHTVCLHCLTRIAASQ 310

Query: 69  TRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
           TRETG  RCPICRE ITIPRGGV ALPPSFLVNQLLDLMSRQRR +IPKCS H +Q
Sbjct: 311 TRETGAFRCPICRELITIPRGGVPALPPSFLVNQLLDLMSRQRREVIPKCSVHINQ 366

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092518|ref|XP_969733.1| PREDICTED: similar to NHL (ring finger b-box coiled coil) domain containing family member (nhl-3) [Tribolium castaneum] gi|270012903|gb|EFA09351.1| hypothetical protein TcasGA2_TC001677 [Tribolium castaneum]

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/116 (86%), Positives = 108/116 (93%)

Query: 9   LSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ 68
           +S NSTLVETVSINYEDFNESFLTCGTCLCMYDG EHTPKLL CSHTVCLHCL++IAASQ
Sbjct: 2   VSMNSTLVETVSINYEDFNESFLTCGTCLCMYDGNEHTPKLLQCSHTVCLHCLTKIAASQ 61

Query: 69  TRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
           TR+TG+ RCPICRE ITIPRGGV+ALPPSFLVNQLLDLMSRQRR +IPKCS H +Q
Sbjct: 62  TRDTGSFRCPICRELITIPRGGVSALPPSFLVNQLLDLMSRQRREVIPKCSVHINQ 117

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203608|gb|EFN82637.1| Chymotrypsin-1 [Harpegnathos saltator]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/116 (86%), Positives = 107/116 (92%)

Query: 9   LSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ 68
           +S +S LVETVSINYEDFNESFLTCGTCLC+YDG EHTPKLLPCSHTVCLHCL+RIAASQ
Sbjct: 302 VSMSSMLVETVSINYEDFNESFLTCGTCLCVYDGSEHTPKLLPCSHTVCLHCLTRIAASQ 361

Query: 69  TRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
           TRETG  RCPICRE ITIPRGGV+ALPPSFLVNQLLDLMSRQRR +IPKCS H +Q
Sbjct: 362 TRETGAFRCPICRELITIPRGGVSALPPSFLVNQLLDLMSRQRREVIPKCSVHINQ 417

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180992|gb|EFN68766.1| Tripartite motif-containing protein 2 [Camponotus floridanus]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/116 (86%), Positives = 106/116 (91%)

Query: 9   LSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ 68
           +S +S LVETVSINYEDFNESFLTCGTCLC+YDG EHTPKLLPCSHTVCLHCL+RIAASQ
Sbjct: 2   VSMSSMLVETVSINYEDFNESFLTCGTCLCVYDGSEHTPKLLPCSHTVCLHCLTRIAASQ 61

Query: 69  TRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
           TRETG  RCPICRE ITIPRGGV ALPPSFLVNQLLDLMSRQRR +IPKCS H +Q
Sbjct: 62  TRETGAFRCPICRELITIPRGGVPALPPSFLVNQLLDLMSRQRREVIPKCSVHINQ 117

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022977|ref|XP_002431913.1| RING finger-containing protein, putative [Pediculus humanus corporis] gi|212517257|gb|EEB19175.1| RING finger-containing protein, putative [Pediculus humanus corporis]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/116 (85%), Positives = 107/116 (92%)

Query: 9   LSTNSTLVETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQ 68
           +  +STLVETVSINYEDFNESFLTCGTCLCMYDG EHTPKLLPCSHTVCLHCL+RIAASQ
Sbjct: 2   IGMSSTLVETVSINYEDFNESFLTCGTCLCMYDGSEHTPKLLPCSHTVCLHCLTRIAASQ 61

Query: 69  TRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQ 124
           TR+ GT RCPICR+ ITIPRGGV+ALPPSFLVNQLLDLMSRQRR +IPKCS H +Q
Sbjct: 62  TRDNGTFRCPICRKLITIPRGGVSALPPSFLVNQLLDLMSRQRREVIPKCSIHLTQ 117

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
WB|WBGene00003599	698	nhl-3 [Caenorhabditis elegans	0.782	0.144	0.549	9.2e-28
ZFIN|ZDB-GENE-070112-1132	772	trim3b "tripartite motif-conta	0.697	0.116	0.377	7.1e-12
UNIPROTKB|J9NRL4	242	TRIM2 "Uncharacterized protein	0.589	0.314	0.385	1e-11
UNIPROTKB|C9JVI3	138	TRIM2 "Tripartite motif-contai	0.589	0.550	0.385	1e-11
ZFIN|ZDB-GENE-080522-4	774	trim3a "tripartite motif-conta	0.604	0.100	0.388	1.2e-11
UNIPROTKB|E9PMW5	96	TRIM3 "Tripartite motif-contai	0.612	0.822	0.360	1.3e-11
MGI|MGI:2685298	734	Trim56 "tripartite motif-conta	0.581	0.102	0.440	1.4e-11
UNIPROTKB|C9JI91	305	TRIM56 "E3 ubiquitin-protein l	0.581	0.245	0.416	1.7e-11
UNIPROTKB|E9PMK8	261	TRIM3 "Tripartite motif-contai	0.612	0.302	0.360	1.8e-11
UNIPROTKB|E1BD59	732	TRIM56 "E3 ubiquitin-protein l	0.581	0.102	0.440	2.2e-11

WB|WBGene00003599 nhl-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 319 (117.4 bits), Expect = 9.2e-28, P = 9.2e-28
 Identities = 56/102 (54%), Positives = 72/102 (70%)

Query:    21 INYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA-SQTRETGTLRCPI 79
             IN +DF+E+FLTC TCL  YDG    PKLLPCSH+VCL C++++A  S   +  TLRCP+
Sbjct:    13 INVDDFSETFLTCSTCLYTYDGNTRKPKLLPCSHSVCLFCVTQLAELSPETQPPTLRCPL 72

Query:    80 CREQITIPRGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTH 121
             CRE   IP GGV   P +F +NQLLD+M  QR+ ++P CS H
Sbjct:    73 CREVCPIPAGGVILFPAAFFINQLLDVMQIQRKDVVPSCSNH 114

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-070112-1132 trim3b "tripartite motif-containing 3b" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 7.1e-12, P = 7.1e-12
 Identities = 37/98 (37%), Positives = 51/98 (52%)

Query:    27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
             ++ FL C  CL  Y    H PK+LPC HT C  CL      Q+    TL CP+CR+   +
Sbjct:    21 DKQFLVCSICLDHY----HNPKVLPCLHTFCERCLQNYIPPQSL---TLSCPVCRQTSIL 73

Query:    87 PRGGVAALPPSFLVNQLLDLMSRQRRHIIPK-CSTHNS 123
             P  GVAAL  +F +  L++++ R      P+ CS   S
Sbjct:    74 PEKGVAALQNNFFITNLMEVLQRDSECSRPEACSVLES 111

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9NRL4 TRIM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 32/83 (38%), Positives = 45/83 (54%)

Query:    27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
             ++ FL C  CL  Y      PK+LPC HT C  CL     + +    TL CP+CR+   +
Sbjct:    17 DKQFLICSICLERYKN----PKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69

Query:    87 PRGGVAALPPSFLVNQLLDLMSR 109
             P  GVAAL  +F +  L+D++ R
Sbjct:    70 PEKGVAALQNNFFITNLMDVLQR 92

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|C9JVI3 TRIM2 "Tripartite motif-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 32/83 (38%), Positives = 45/83 (54%)

Query:    27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
             ++ FL C  CL  Y      PK+LPC HT C  CL     + +    TL CP+CR+   +
Sbjct:    17 DKQFLICSICLERYKN----PKVLPCLHTFCERCLQNYIPAHSL---TLSCPVCRQTSIL 69

Query:    87 PRGGVAALPPSFLVNQLLDLMSR 109
             P  GVAAL  +F +  L+D++ R
Sbjct:    70 PEKGVAALQNNFFITNLMDVLQR 92

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0043523 "regulation of neuron apoptotic process" evidence=IEA

ZFIN|ZDB-GENE-080522-4 trim3a "tripartite motif-containing 3a" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 33/85 (38%), Positives = 48/85 (56%)

Query:    27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
             ++ FL C  CL  Y    H PK+LPC HT C  CL      Q+    TL CP+CR+   +
Sbjct:    21 DKQFLVCSICLEHY----HNPKVLPCLHTFCERCLQNYIPPQSL---TLSCPVCRQTSIL 73

Query:    87 PRGGVAALPPSFLVNQLLDLMSRQR 111
             P  GVAAL  +F +  L++++ R++
Sbjct:    74 PEKGVAALQNNFFITNLMEVLQREQ 98

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

UNIPROTKB|E9PMW5 TRIM3 "Tripartite motif-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 31/86 (36%), Positives = 47/86 (54%)

Query:    24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
             +  ++ FL C  CL  Y      PK+LPC HT C  CL     +Q+    TL CP+CR+ 
Sbjct:    13 QPMDKQFLVCSICLDRYQ----CPKVLPCLHTFCERCLQNYIPAQSL---TLSCPVCRQT 65

Query:    84 ITIPRGGVAALPPSFLVNQLLDLMSR 109
               +P  GV+AL  +F ++ L++ M +
Sbjct:    66 SILPEQGVSALQNNFFISSLMEAMQQ 91

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2685298 Trim56 "tripartite motif-containing 56" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 37/84 (44%), Positives = 46/84 (54%)

Query:    24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
             E  +  FL C  CL       HTPK LPC HT C  CL+++        G +RCP CRE 
Sbjct:    12 EALSSDFLACKICLEQL----HTPKTLPCLHTYCQDCLAQLDIG-----GQVRCPECREI 62

Query:    84 ITIPRGGVAALPPSFLVNQLLDLM 107
             + +P  GVAA   +F VN LLDL+
Sbjct:    63 VPVPAEGVAAFKTNFFVNGLLDLV 86

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0032608 "interferon-beta production" evidence=IMP

GO:0034340 "response to type I interferon" evidence=IDA

GO:0045087 "innate immune response" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051607 "defense response to virus" evidence=IMP

GO:0070534 "protein K63-linked ubiquitination" evidence=IDA

UNIPROTKB|C9JI91 TRIM56 "E3 ubiquitin-protein ligase TRIM56" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 35/84 (41%), Positives = 46/84 (54%)

Query:    24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
             E  +  FL C  CL         PK LPC HT C  CL+++A     + G +RCP CRE 
Sbjct:    12 EALSSDFLACKICLEQL----RAPKTLPCLHTYCQDCLAQLA-----DGGRVRCPECRET 62

Query:    84 ITIPRGGVAALPPSFLVNQLLDLM 107
             + +P  GVA+   +F VN LLDL+
Sbjct:    63 VPVPPEGVASFKTNFFVNGLLDLV 86

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E9PMK8 TRIM3 "Tripartite motif-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 31/86 (36%), Positives = 47/86 (54%)

Query:    24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
             +  ++ FL C  CL  Y      PK+LPC HT C  CL     +Q+    TL CP+CR+ 
Sbjct:    13 QPMDKQFLVCSICLDRYQ----CPKVLPCLHTFCERCLQNYIPAQSL---TLSCPVCRQT 65

Query:    84 ITIPRGGVAALPPSFLVNQLLDLMSR 109
               +P  GV+AL  +F ++ L++ M +
Sbjct:    66 SILPEQGVSALQNNFFISSLMEAMQQ 91

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1BD59 TRIM56 "E3 ubiquitin-protein ligase TRIM56" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 37/84 (44%), Positives = 45/84 (53%)

Query:    24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
             E  +  FL C  CL         PK LPC HT C  CL+++A     E   LRCP CRE 
Sbjct:    12 EALSSDFLACKICLEQL----RVPKTLPCLHTYCQDCLAQLA-----EGSRLRCPECRES 62

Query:    84 ITIPRGGVAALPPSFLVNQLLDLM 107
             + +P  GVAA   +F VN LLDL+
Sbjct:    63 VPVPPAGVAAFKTNFFVNGLLDLV 86

GO:0032608 "interferon-beta production" evidence=ISS

GO:0034340 "response to type I interferon" evidence=ISS

GO:0051607 "defense response to virus" evidence=ISS

GO:0070534 "protein K63-linked ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	129
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	3e-04
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	0.001

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
           S   C     +    E+ P +LPC H      L ++A    +  G  +CP 
Sbjct: 8  HSIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLA----KNGGKFKCPY 55

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
           C  CL  +        LLPC H  C  C+ +       ++G   CP+CR  I
Sbjct: 1  ECPICLEEFR---EPVVLLPCGHVFCRSCIDKW-----LKSGKNTCPLCRTPI 45

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.6
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.48
KOG0287|consensus	442		99.46
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	99.43
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.43
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.37
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.35
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.33
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.32
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.3
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.3
PF14634	44	zf-RING_5: zinc-RING finger domain	99.28
KOG2177|consensus	386		99.27
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	99.22
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.19
KOG0320|consensus	187		99.17
PHA02926	242	zinc finger-like protein; Provisional	99.15
KOG0823|consensus	230		99.12
PHA02929	238	N1R/p28-like protein; Provisional	99.08
KOG4367|consensus	699		99.07
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.07
KOG0317|consensus	293		99.07
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	99.0
KOG4185|consensus	296		98.91
KOG2164|consensus	513		98.79
KOG0311|consensus	381		98.74
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.7
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.68
KOG4628|consensus	348		98.65
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.63
KOG2660|consensus	331		98.61
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.61
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.56
KOG0978|consensus	698		98.5
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.45
COG5152	259	Uncharacterized conserved protein, contains RING a	98.45
KOG4159|consensus	398		98.43
KOG0802|consensus	543		98.32
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.26
KOG0824|consensus	324		98.24
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.24
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.12
KOG2879|consensus	298		98.1
KOG1813|consensus	313		98.07
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.96
KOG0804|consensus	493		97.95
KOG0297|consensus	391		97.95
KOG4172|consensus	62		97.86
KOG1039|consensus	344		97.84
KOG1002|consensus	791		97.8
KOG1785|consensus	563		97.8
KOG3161|consensus	861		97.74
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	97.71
KOG1493|consensus	84		97.65
KOG4265|consensus	349		97.62
KOG1814|consensus	445		97.59
KOG1734|consensus	328		97.51
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	97.5
KOG1941|consensus	518		97.47
KOG1645|consensus	463		97.45
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.32
KOG0827|consensus	465		97.32
KOG0828|consensus	636		97.19
KOG4739|consensus	233		97.13
PF04641	260	Rtf2: Rtf2 RING-finger	97.1
COG5175	480	MOT2 Transcriptional repressor [Transcription]	97.02
KOG4692|consensus	489		97.01
KOG2817|consensus	394		96.94
KOG3002|consensus	299		96.92
KOG1812|consensus	384		96.92
KOG0825|consensus	1134		96.88
KOG3800|consensus	300		96.73
COG5219	1525	Uncharacterized conserved protein, contains RING Z	96.73
KOG4275|consensus	350		96.7
KOG3039|consensus	303		96.66
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	96.33
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.3
KOG1940|consensus	276		96.22
KOG1001|consensus	674		96.2
PHA03096	284	p28-like protein; Provisional	96.04
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	96.03
KOG1571|consensus	355		95.96
KOG4185|consensus	296		95.96
KOG4362|consensus	684		95.85
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	95.82
KOG3970|consensus	299		95.63
COG5109	396	Uncharacterized conserved protein, contains RING Z	95.61
KOG2930|consensus	114		95.31
KOG2932|consensus	389		95.27
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.17
KOG1428|consensus	3738		95.05
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	94.98
KOG2114|consensus	933		94.76
KOG0826|consensus	357		94.59
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.4
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	94.25
KOG1815|consensus	444		93.62
KOG4445|consensus	368		93.54
PHA02862	156	5L protein; Provisional	93.23
KOG1952|consensus	950		93.18
KOG3113|consensus	293		92.93
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	92.52
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	92.15
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	91.77
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	91.64
PF06906	57	DUF1272: Protein of unknown function (DUF1272); In	91.41
KOG3039|consensus	303		90.95
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	90.51
KOG1100|consensus	207		90.38
COG3813	84	Uncharacterized protein conserved in bacteria [Fun	90.21
KOG0298|consensus	1394		89.93
KOG3579|consensus	352		89.66
KOG3899|consensus	381		89.52
cd00065	57	FYVE FYVE domain; Zinc-binding domain; targets pro	89.39
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	88.84
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	88.69
KOG2034|consensus	911		87.56
KOG3268|consensus	234		87.09
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	85.5
KOG3053|consensus	293		84.4
smart00064	68	FYVE Protein present in Fab1, YOTB, Vac1, and EEA1	83.77
PF14353	128	CpXC: CpXC protein	82.86
KOG2068|consensus	327		82.58
PF06844	68	DUF1244: Protein of unknown function (DUF1244); In	82.51
KOG2169|consensus	636		81.3

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.60  E-value=4.6e-16  Score=82.31  Aligned_cols=42  Identities=36%  Similarity=0.973  Sum_probs=32.3

Q ss_pred             cccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857         33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC   80 (129)
Q Consensus        33 C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C   80 (129)
                      ||||+++|    ++|++|+|||+||..||.+++....  +..+.||.|
T Consensus         1 CpiC~~~~----~~Pv~l~CGH~FC~~Cl~~~~~~~~--~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLF----KDPVSLPCGHSFCRSCLERLWKEPS--GSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-----SSEEE-SSSSEEEHHHHHHHHCCSS--SST---SSS
T ss_pred             CCccchhh----CCccccCCcCHHHHHHHHHHHHccC--CcCCCCcCC
Confidence            89999999    8999999999999999999998753  223789987

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.48  E-value=5.2e-14  Score=106.08  Aligned_cols=70  Identities=29%  Similarity=0.691  Sum_probs=60.3

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      ++..+.|+||.+.|    ..|++++|||+||..||..++..      ...||.|+..+..     ..+..|+.|.+|++.
T Consensus        23 Le~~l~C~IC~d~~----~~PvitpCgH~FCs~CI~~~l~~------~~~CP~Cr~~~~~-----~~Lr~N~~L~~iVe~   87 (397)
T TIGR00599        23 LDTSLRCHICKDFF----DVPVLTSCSHTFCSLCIRRCLSN------QPKCPLCRAEDQE-----SKLRSNWLVSEIVES   87 (397)
T ss_pred             cccccCCCcCchhh----hCccCCCCCCchhHHHHHHHHhC------CCCCCCCCCcccc-----ccCccchHHHHHHHH
Confidence            44589999999999    79999999999999999999875      2379999998763     368889999999999


Q ss_pred             HHhhc
Q psy11857        107 MSRQR  111 (129)
Q Consensus       107 ~~~~~  111 (129)
                      |+..+
T Consensus        88 ~~~~R   92 (397)
T TIGR00599        88 FKNLR   92 (397)
T ss_pred             HHHhh
Confidence            98654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0287|consensus

Probab=99.46  E-value=3.1e-14  Score=103.86  Aligned_cols=70  Identities=26%  Similarity=0.691  Sum_probs=60.9

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      ++..++|.||+++|    +.|+++||||+||.-||..++..      ...||.|+..+.-+     .+..|+.+.+|++.
T Consensus        20 lD~lLRC~IC~eyf----~ip~itpCsHtfCSlCIR~~L~~------~p~CP~C~~~~~Es-----~Lr~n~il~Eiv~S   84 (442)
T KOG0287|consen   20 LDDLLRCGICFEYF----NIPMITPCSHTFCSLCIRKFLSY------KPQCPTCCVTVTES-----DLRNNRILDEIVKS   84 (442)
T ss_pred             hHHHHHHhHHHHHh----cCceeccccchHHHHHHHHHhcc------CCCCCceecccchh-----hhhhhhHHHHHHHH
Confidence            45589999999999    79999999999999999999987      44899999988854     68889999999998


Q ss_pred             HHhhc
Q psy11857        107 MSRQR  111 (129)
Q Consensus       107 ~~~~~  111 (129)
                      |.-.+
T Consensus        85 ~~~~R   89 (442)
T KOG0287|consen   85 LNFAR   89 (442)
T ss_pred             HHHHH
Confidence            87543

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=99.43  E-value=1e-13  Score=73.42  Aligned_cols=43  Identities=30%  Similarity=0.912  Sum_probs=26.6

Q ss_pred             cccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccc
Q psy11857         33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCP   78 (129)
Q Consensus        33 C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP   78 (129)
                      ||||.+ |++++..|++|+|||+||..|+.++.....  ...+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~--~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSD--RNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S---S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCC--CCeeeCc
Confidence            899999 877777899999999999999999998732  3578887

>smart00504 Ubox Modified RING finger domain

Probab=99.43  E-value=1.4e-13  Score=78.88  Aligned_cols=62  Identities=18%  Similarity=0.275  Sum_probs=52.8

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      ++.||||++.+    .+|++++|||+||..||.+|+..      ...||.|+..+..     .++.+|..+++.++.
T Consensus         1 ~~~Cpi~~~~~----~~Pv~~~~G~v~~~~~i~~~~~~------~~~cP~~~~~~~~-----~~l~~~~~l~~~i~~   62 (63)
T smart00504        1 EFLCPISLEVM----KDPVILPSGQTYERRAIEKWLLS------HGTDPVTGQPLTH-----EDLIPNLALKSAIQE   62 (63)
T ss_pred             CcCCcCCCCcC----CCCEECCCCCEEeHHHHHHHHHH------CCCCCCCcCCCCh-----hhceeCHHHHHHHHh
Confidence            36899999999    79999999999999999999986      3489999988753     468888888887763

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.37  E-value=7.2e-13  Score=78.26  Aligned_cols=69  Identities=16%  Similarity=0.236  Sum_probs=55.7

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS  108 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~  108 (129)
                      +.+.|||++++|    .+|+++++||+|++.+|.+|+..     +...||.++..+..     ..+.+|..+++.++.+.
T Consensus         3 ~~f~CpIt~~lM----~dPVi~~~G~tyer~~I~~~l~~-----~~~~~P~t~~~l~~-----~~l~pn~~Lk~~I~~~~   68 (73)
T PF04564_consen    3 DEFLCPITGELM----RDPVILPSGHTYERSAIERWLEQ-----NGGTDPFTRQPLSE-----SDLIPNRALKSAIEEWC   68 (73)
T ss_dssp             GGGB-TTTSSB-----SSEEEETTSEEEEHHHHHHHHCT-----TSSB-TTT-SB-SG-----GGSEE-HHHHHHHHHHH
T ss_pred             cccCCcCcCcHh----hCceeCCcCCEEcHHHHHHHHHc-----CCCCCCCCCCcCCc-----ccceECHHHHHHHHHHH
Confidence            378999999999    89999999999999999999987     45689999988774     36899999999999998


Q ss_pred             hhc
Q psy11857        109 RQR  111 (129)
Q Consensus       109 ~~~  111 (129)
                      +.+
T Consensus        69 ~~~   71 (73)
T PF04564_consen   69 AEN   71 (73)
T ss_dssp             HHC
T ss_pred             HHc
Confidence            754

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.35  E-value=8.4e-13  Score=90.36  Aligned_cols=54  Identities=20%  Similarity=0.655  Sum_probs=44.1

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccC----------CCCccccccCCcceee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTR----------ETGTLRCPICREQITI   86 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~----------~~~~~~CP~Cr~~~~~   86 (129)
                      +.+.|+||++.+    ++|++++|||.||..||..|+.....          .+....||.||..+..
T Consensus        17 ~~~~CpICld~~----~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         17 GDFDCNICLDQV----RDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CccCCccCCCcC----CCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            478999999999    79999999999999999999764211          1245789999988763

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.33  E-value=7e-13  Score=70.82  Aligned_cols=43  Identities=28%  Similarity=0.733  Sum_probs=36.0

Q ss_pred             ccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCC
Q psy11857         32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR   81 (129)
Q Consensus        32 ~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr   81 (129)
                      .|+||++.|.. +..++.++|||.||..|+.+|+..      ...||.||
T Consensus         2 ~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~~~~~------~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFED-GEKVVKLPCGHVFHRSCIKEWLKR------NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHT-TSCEEEETTSEEEEHHHHHHHHHH------SSB-TTTH
T ss_pred             CCcCCChhhcC-CCeEEEccCCCeeCHHHHHHHHHh------CCcCCccC
Confidence            59999999953 457788999999999999999987      34999996

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.32  E-value=9.2e-13  Score=68.61  Aligned_cols=38  Identities=32%  Similarity=0.995  Sum_probs=31.7

Q ss_pred             cccccccccCCCCce-EeecCCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857         33 CGTCLCMYDGGEHTP-KLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC   80 (129)
Q Consensus        33 C~iC~~~~~~~~~~p-~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C   80 (129)
                      |+||++.+    .+| +.++|||+||..|+.+++..      ...||.|
T Consensus         1 C~iC~~~~----~~~~~~~~CGH~fC~~C~~~~~~~------~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDEL----RDPVVVTPCGHSFCKECIEKYLEK------NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-----SSEEEECTTSEEEEHHHHHHHHHC------TSB-TTT
T ss_pred             CCCCCCcc----cCcCEECCCCCchhHHHHHHHHHC------cCCCcCC
Confidence            89999999    789 57889999999999999886      3689987

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.30  E-value=2.1e-12  Score=67.88  Aligned_cols=40  Identities=40%  Similarity=1.157  Sum_probs=35.6

Q ss_pred             cccccccccCCCCceE-eecCCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857         33 CGTCLCMYDGGEHTPK-LLPCSHTVCLHCLSRIAASQTRETGTLRCPIC   80 (129)
Q Consensus        33 C~iC~~~~~~~~~~p~-~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C   80 (129)
                      |+||++.+    ..|. +++|||+||..|+.+++..    .....||.|
T Consensus         1 C~iC~~~~----~~~~~~~~C~H~fC~~C~~~~~~~----~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPF----EDPVILLPCGHSFCRDCLRKWLEN----SGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBC----SSEEEETTTSEEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred             CCcCCccc----cCCCEEecCCCcchHHHHHHHHHh----cCCccCCcC
Confidence            89999999    6888 8899999999999999996    357789987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.30  E-value=2.1e-12  Score=70.80  Aligned_cols=46  Identities=35%  Similarity=0.777  Sum_probs=39.7

Q ss_pred             ccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +..|.||++..    .+++.+||||. ||..|+.+++..      ...||+||+.+.
T Consensus         2 ~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENP----RDVVLLPCGHLCFCEECAERLLKR------KKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSB----SSEEEETTCEEEEEHHHHHHHHHT------TSBBTTTTBB-S
T ss_pred             cCCCccCCccC----CceEEeCCCChHHHHHHhHHhccc------CCCCCcCChhhc
Confidence            57899999998    78999999999 999999999885      568999998764

...

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=99.28  E-value=4.1e-12  Score=67.83  Aligned_cols=44  Identities=36%  Similarity=1.046  Sum_probs=36.8

Q ss_pred             ccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857         32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE   82 (129)
Q Consensus        32 ~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~   82 (129)
                      .|++|++.| ..+..|++++|||+||..|+.....      ....||+|++
T Consensus         1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~~------~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLKG------KSVKCPICRK   44 (44)
T ss_pred             CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhcC------CCCCCcCCCC
Confidence            489999999 3446789999999999999998871      4679999985

>KOG2177|consensus

Probab=99.27  E-value=3.5e-12  Score=92.27  Aligned_cols=81  Identities=35%  Similarity=0.747  Sum_probs=65.0

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      ..+++.|+||++.|    ..|++++|||+||..|+..++.      ..+.||.||. ..      ..+..|..+.++++.
T Consensus        10 ~~~~~~C~iC~~~~----~~p~~l~C~H~~c~~C~~~~~~------~~~~Cp~cr~-~~------~~~~~n~~l~~~~~~   72 (386)
T KOG2177|consen   10 LQEELTCPICLEYF----REPVLLPCGHNFCRACLTRSWE------GPLSCPVCRP-PS------RNLRPNVLLANLVER   72 (386)
T ss_pred             ccccccChhhHHHh----hcCccccccchHhHHHHHHhcC------CCcCCcccCC-ch------hccCccHHHHHHHHH
Confidence            44589999999999    7889999999999999999887      2579999995 32      157799999999999


Q ss_pred             HHhhccC-----CCCCCCccccc
Q psy11857        107 MSRQRRH-----IIPKCSTHNSQ  124 (129)
Q Consensus       107 ~~~~~~~-----~~~~C~~H~~~  124 (129)
                      +++....     ....|..|+++
T Consensus        73 ~~~~~~~~~~~~~~~~c~~~~~~   95 (386)
T KOG2177|consen   73 LRQLRLSRPLGSKEELCEKHGEE   95 (386)
T ss_pred             HHhcCCcccccccchhhhhcCCc
Confidence            9876432     12278888853

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=99.22  E-value=5.2e-12  Score=90.72  Aligned_cols=70  Identities=31%  Similarity=0.577  Sum_probs=57.8

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      ++..+.|-||...+    +.|...+|||+||.-||.+++..+      ..||.||......     .++.++.+..+++.
T Consensus        22 LDs~lrC~IC~~~i----~ip~~TtCgHtFCslCIR~hL~~q------p~CP~Cr~~~~es-----rlr~~s~~~ei~es   86 (391)
T COG5432          22 LDSMLRCRICDCRI----SIPCETTCGHTFCSLCIRRHLGTQ------PFCPVCREDPCES-----RLRGSSGSREINES   86 (391)
T ss_pred             chhHHHhhhhhhee----ecceecccccchhHHHHHHHhcCC------CCCccccccHHhh-----hcccchhHHHHHHh
Confidence            34578999999999    899999999999999999999874      3799999887643     47778888888877


Q ss_pred             HHhhc
Q psy11857        107 MSRQR  111 (129)
Q Consensus       107 ~~~~~  111 (129)
                      +...+
T Consensus        87 ~~~~r   91 (391)
T COG5432          87 HARNR   91 (391)
T ss_pred             hhhcc
Confidence            76543

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.19  E-value=2.7e-12  Score=72.55  Aligned_cols=60  Identities=25%  Similarity=0.675  Sum_probs=31.9

Q ss_pred             cCccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLL  104 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~  104 (129)
                      ++.+.|++|.+++    +.|+.+ .|.|.||+.|+...+..        .||+|+.+...     .++..|..+.+|+
T Consensus         5 e~lLrCs~C~~~l----~~pv~l~~CeH~fCs~Ci~~~~~~--------~CPvC~~Paw~-----qD~~~NrqLd~~i   65 (65)
T PF14835_consen    5 EELLRCSICFDIL----KEPVCLGGCEHIFCSSCIRDCIGS--------ECPVCHTPAWI-----QDIQINRQLDSMI   65 (65)
T ss_dssp             HHTTS-SSS-S------SS-B---SSS--B-TTTGGGGTTT--------B-SSS--B-S------SS----HHHHHHH
T ss_pred             HHhcCCcHHHHHh----cCCceeccCccHHHHHHhHHhcCC--------CCCCcCChHHH-----HHHHhhhhhhccC
Confidence            3478999999999    899876 59999999999764433        59999987654     4688888888764

>KOG0320|consensus

Probab=99.17  E-value=1.5e-11  Score=82.57  Aligned_cols=52  Identities=31%  Similarity=0.690  Sum_probs=43.4

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      +..+.||||++.+.+  +.|+...|||.||..||...+..      ...||.|++.+..+
T Consensus       129 ~~~~~CPiCl~~~se--k~~vsTkCGHvFC~~Cik~alk~------~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSE--KVPVSTKCGHVFCSQCIKDALKN------TNKCPTCRKKITHK  180 (187)
T ss_pred             ccccCCCceecchhh--ccccccccchhHHHHHHHHHHHh------CCCCCCcccccchh
Confidence            346899999999964  56677899999999999999887      45899999977643

>PHA02926 zinc finger-like protein; Provisional

Probab=99.15  E-value=4.5e-11  Score=83.10  Aligned_cols=58  Identities=22%  Similarity=0.541  Sum_probs=42.9

Q ss_pred             CccccccccccccC----CC-CceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         29 SFLTCGTCLCMYDG----GE-HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        29 ~~l~C~iC~~~~~~----~~-~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      ++..|+||++...+    .+ +-++..+|+|+||..||.+|.......+....||.||..+..
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            47899999987531    11 123455799999999999999864333456789999998763

>KOG0823|consensus

Probab=99.12  E-value=5.9e-11  Score=82.85  Aligned_cols=51  Identities=25%  Similarity=0.796  Sum_probs=45.1

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ...+.|.||++.-    ++|++..|||-||..||-+|+..+   .+...||+|+..+.
T Consensus        45 ~~~FdCNICLd~a----kdPVvTlCGHLFCWpClyqWl~~~---~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   45 GGFFDCNICLDLA----KDPVVTLCGHLFCWPCLYQWLQTR---PNSKECPVCKAEVS   95 (230)
T ss_pred             CCceeeeeecccc----CCCEEeecccceehHHHHHHHhhc---CCCeeCCccccccc
Confidence            3578999999999    899999999999999999999985   35778999997765

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.08  E-value=6.9e-11  Score=83.92  Aligned_cols=51  Identities=24%  Similarity=0.555  Sum_probs=39.4

Q ss_pred             CccccccccccccCCC----CceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGE----HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~----~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +...|+||++.+.+..    ..+++.+|||.||..||.+|+..      ...||+||..+.
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~------~~tCPlCR~~~~  227 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE------KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc------CCCCCCCCCEee
Confidence            3689999999873211    11356679999999999999875      448999998876

>KOG4367|consensus

Probab=99.07  E-value=2e-10  Score=86.86  Aligned_cols=80  Identities=25%  Similarity=0.676  Sum_probs=68.5

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCC------------------------------------
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRE------------------------------------   71 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~------------------------------------   71 (129)
                      ++++.|+||...|    ++|++|+|||+.|..|......+.+..                                    
T Consensus         2 eeelkc~vc~~f~----~epiil~c~h~lc~~ca~~~~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~~~   77 (699)
T KOG4367|consen    2 EEELKCPVCGSFY----REPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGS   77 (699)
T ss_pred             cccccCceehhhc----cCceEeecccHHHHHHHHhhcccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCCCc
Confidence            4689999999999    899999999999999998765432220                                    


Q ss_pred             ------------------------------------------CCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHHh
Q psy11857         72 ------------------------------------------TGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMSR  109 (129)
Q Consensus        72 ------------------------------------------~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~~  109 (129)
                                                                +..+.||.|.+.+...++++..+|.|..+.+.++.|.+
T Consensus        78 ~~~~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~~~dd~~l~~~p~n~~le~vi~ryq~  157 (699)
T KOG4367|consen   78 YGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQ  157 (699)
T ss_pred             cCCeeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhheEecccccccCchhhHHHHHHHHHhh
Confidence                                                      23578999999999999999999999999999999987


Q ss_pred             hc
Q psy11857        110 QR  111 (129)
Q Consensus       110 ~~  111 (129)
                      ..
T Consensus       158 s~  159 (699)
T KOG4367|consen  158 SK  159 (699)
T ss_pred             hh
Confidence            64

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.07  E-value=1.3e-10  Score=61.40  Aligned_cols=43  Identities=35%  Similarity=0.925  Sum_probs=35.9

Q ss_pred             ccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857         32 TCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQ   83 (129)
Q Consensus        32 ~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~   83 (129)
                      .|+||.+.+    ..++.++ |||.||..|+..|+..     ....||.|+..
T Consensus         1 ~C~iC~~~~----~~~~~~~~C~H~~c~~C~~~~~~~-----~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEF----REPVVLLPCGHVFCRSCIDKWLKS-----GKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhh----hCceEecCCCChhcHHHHHHHHHh-----CcCCCCCCCCc
Confidence            489999998    5677665 9999999999999886     35679999864

>KOG0317|consensus

Probab=99.07  E-value=7.5e-11  Score=84.63  Aligned_cols=49  Identities=31%  Similarity=0.788  Sum_probs=42.9

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+....|.+|++..    .+|.-+||||.||..||..|...      ...||.||..+.
T Consensus       236 ~~a~~kC~LCLe~~----~~pSaTpCGHiFCWsCI~~w~~e------k~eCPlCR~~~~  284 (293)
T KOG0317|consen  236 PEATRKCSLCLENR----SNPSATPCGHIFCWSCILEWCSE------KAECPLCREKFQ  284 (293)
T ss_pred             CCCCCceEEEecCC----CCCCcCcCcchHHHHHHHHHHcc------ccCCCcccccCC
Confidence            34568999999999    79999999999999999999987      335999998765

>smart00184 RING Ring finger

Probab=99.00  E-value=5.4e-10  Score=57.11  Aligned_cols=39  Identities=44%  Similarity=1.054  Sum_probs=33.6

Q ss_pred             cccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857         33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC   80 (129)
Q Consensus        33 C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C   80 (129)
                      |+||++..    ..++.++|||.||..|+..|+..     ....||.|
T Consensus         1 C~iC~~~~----~~~~~~~C~H~~c~~C~~~~~~~-----~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL----KDPVVLPCGHTFCRSCIRKWLKS-----GNNTCPIC   39 (39)
T ss_pred             CCcCccCC----CCcEEecCCChHHHHHHHHHHHh-----CcCCCCCC
Confidence            78999987    78999999999999999999883     34579986

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG4185|consensus

Probab=98.91  E-value=1.3e-09  Score=80.05  Aligned_cols=91  Identities=34%  Similarity=0.791  Sum_probs=73.4

Q ss_pred             ccccccccccccC--CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857         30 FLTCGTCLCMYDG--GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM  107 (129)
Q Consensus        30 ~l~C~iC~~~~~~--~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~  107 (129)
                      .+.|-||.+.|+.  +++.|+.|.|||+||..|+......     ....||+||..+..+...+..+..|+.+..+++..
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-----~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-----SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC-----ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            4789999999984  6889999999999999999988876     56778999999877777889999999999999886


Q ss_pred             Hhhc------cCCCCCCCcccccc
Q psy11857        108 SRQR------RHIIPKCSTHNSQI  125 (129)
Q Consensus       108 ~~~~------~~~~~~C~~H~~~~  125 (129)
                      ....      ......|..|....
T Consensus        78 ~~~~~~~~~~~~~~~~c~~~~~nl  101 (296)
T KOG4185|consen   78 KKTTVEEKGEADSPPKCKEHPYNL  101 (296)
T ss_pred             hcccccccCcccCCcccccCcccc
Confidence            3211      11334588887543

>KOG2164|consensus

Probab=98.79  E-value=2.7e-09  Score=81.88  Aligned_cols=52  Identities=31%  Similarity=0.632  Sum_probs=43.9

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      ...||||++..    ..|..+.|||.||..||.++|.... ......||+|+..+.+
T Consensus       186 ~~~CPICL~~~----~~p~~t~CGHiFC~~CiLqy~~~s~-~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPP----SVPVRTNCGHIFCGPCILQYWNYSA-IKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCC----CcccccccCceeeHHHHHHHHhhhc-ccCCccCCchhhhccc
Confidence            78999999998    6888888999999999999988741 1345689999988875

>KOG0311|consensus

Probab=98.74  E-value=1.7e-09  Score=79.59  Aligned_cols=59  Identities=24%  Similarity=0.666  Sum_probs=47.1

Q ss_pred             ccCcccccccCccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         19 VSINYEDFNESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        19 ~~~~~~~~~~~~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      +.+....+.. ++.|+||++++    +..++.+ |+|.||..||...+..     ....||.||+.....
T Consensus        33 i~~~l~~~~~-~v~c~icl~ll----k~tmttkeClhrfc~~ci~~a~r~-----gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   33 IMVDLAMFDI-QVICPICLSLL----KKTMTTKECLHRFCFDCIWKALRS-----GNNECPTCRKKLVSK   92 (381)
T ss_pred             heecHHHhhh-hhccHHHHHHH----HhhcccHHHHHHHHHHHHHHHHHh-----cCCCCchHHhhcccc
Confidence            3444455444 89999999999    6777665 9999999999988887     456899999988765

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=7.5e-09  Score=73.66  Aligned_cols=48  Identities=31%  Similarity=0.662  Sum_probs=40.8

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHH-HHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR-IAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~-~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+..|.||++..    ..|..++|||.||..||.. |-.+     ..-.||.||+.+.
T Consensus       214 ~d~kC~lC~e~~----~~ps~t~CgHlFC~~Cl~~~~t~~-----k~~~CplCRak~~  262 (271)
T COG5574         214 ADYKCFLCLEEP----EVPSCTPCGHLFCLSCLLISWTKK-----KYEFCPLCRAKVY  262 (271)
T ss_pred             cccceeeeeccc----CCcccccccchhhHHHHHHHHHhh-----ccccCchhhhhcc
Confidence            378899999999    7999999999999999999 5544     3446999999876

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.68  E-value=2.4e-08  Score=73.14  Aligned_cols=48  Identities=27%  Similarity=0.683  Sum_probs=36.5

Q ss_pred             cccccccccc-ccCCCCceE----eecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCM-YDGGEHTPK----LLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~-~~~~~~~p~----~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +..||+|... |    ..|.    +.+|||.||..|+...+..     +...||.|+..+..
T Consensus         3 ~~~CP~Ck~~~y----~np~~kl~i~~CGH~~C~sCv~~l~~~-----~~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKY----RNPSLKLMVNVCGHTLCESCVDLLFVR-----GSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCc----cCcccccccCCCCCcccHHHHHHHhcC-----CCCCCCCCCCccch
Confidence            4689999983 3    2332    2269999999999998865     34589999988774

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4628|consensus

Probab=98.65  E-value=1.3e-08  Score=75.63  Aligned_cols=50  Identities=32%  Similarity=0.819  Sum_probs=42.0

Q ss_pred             cccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        31 l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      ..|.||++.|..|++- +.|||+|.|...||..|+.+     ....||+|+..+..
T Consensus       230 ~~CaIClEdY~~Gdkl-RiLPC~H~FH~~CIDpWL~~-----~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKL-RILPCSHKFHVNCIDPWLTQ-----TRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCee-eEecCCCchhhccchhhHhh-----cCccCCCCCCcCCC
Confidence            4899999999766665 46999999999999999998     34569999987653

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.63  E-value=2.9e-08  Score=58.51  Aligned_cols=45  Identities=29%  Similarity=0.730  Sum_probs=33.3

Q ss_pred             cccccccccccC--------CCCceE-eecCCchhHHHhHHHHHHhccCCCCccccccCC
Q psy11857         31 LTCGTCLCMYDG--------GEHTPK-LLPCSHTVCLHCLSRIAASQTRETGTLRCPICR   81 (129)
Q Consensus        31 l~C~iC~~~~~~--------~~~~p~-~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr   81 (129)
                      -.|.||++.|.+        ++.-++ ..+|||.|...||.+|+..      ...||+||
T Consensus        20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~------~~~CP~CR   73 (73)
T PF12678_consen   20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ------NNTCPLCR   73 (73)
T ss_dssp             SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT------SSB-TTSS
T ss_pred             CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc------CCcCCCCC
Confidence            349999999942        223444 4479999999999999987      33999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2660|consensus

Probab=98.61  E-value=2.9e-08  Score=72.68  Aligned_cols=67  Identities=18%  Similarity=0.433  Sum_probs=53.1

Q ss_pred             ccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM  107 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~  107 (129)
                      .+.|.+|..+|    .++.++. |.||||..||..++..      ...||.|...+-.. .....+..+..++.|+-.+
T Consensus        15 ~itC~LC~GYl----iDATTI~eCLHTFCkSCivk~l~~------~~~CP~C~i~ih~t-~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   15 HITCRLCGGYL----IDATTITECLHTFCKSCIVKYLEE------SKYCPTCDIVIHKT-HPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             ceehhhcccee----ecchhHHHHHHHHHHHHHHHHHHH------hccCCccceeccCc-cccccCCcchHHHHHHHHH
Confidence            78999999999    7888776 9999999999999987      56999998765421 2234567777777777655

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.61  E-value=7.8e-08  Score=57.70  Aligned_cols=54  Identities=31%  Similarity=0.798  Sum_probs=42.6

Q ss_pred             ccccccccccccC--------CCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDG--------GEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~--------~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +-.|+||...|++        ++.-|+++ .|+|.|...||.+|+..+.   ....||+||+....
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~---~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS---SKGQCPMCRQPWKF   83 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc---CCCCCCCcCCeeee
Confidence            5678888888863        45557766 5999999999999999752   35699999998764

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=4.8e-08  Score=72.69  Aligned_cols=56  Identities=38%  Similarity=0.707  Sum_probs=44.9

Q ss_pred             ccCccccccccccccC---------CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCC
Q psy11857         27 NESFLTCGTCLCMYDG---------GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPR   88 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~---------~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~   88 (129)
                      -.++-.|.||++.+-+         .+..|+.|||||.+...|++.|...++      +||.||.++....
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ------TCPICr~p~ifd~  348 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ------TCPICRRPVIFDQ  348 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc------CCCcccCcccccc
Confidence            3457899999998433         235679999999999999999999854      8999999866543

>KOG0978|consensus

Probab=98.50  E-value=3.4e-08  Score=78.92  Aligned_cols=48  Identities=21%  Similarity=0.653  Sum_probs=42.4

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ..+.||+|...+    ++.++..|||.||..|+...+..     ....||.|...+.
T Consensus       642 ~~LkCs~Cn~R~----Kd~vI~kC~H~FC~~Cvq~r~et-----RqRKCP~Cn~aFg  689 (698)
T KOG0978|consen  642 ELLKCSVCNTRW----KDAVITKCGHVFCEECVQTRYET-----RQRKCPKCNAAFG  689 (698)
T ss_pred             hceeCCCccCch----hhHHHHhcchHHHHHHHHHHHHH-----hcCCCCCCCCCCC
Confidence            478999999988    78888899999999999998886     4668999998875

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.1e-07  Score=69.11  Aligned_cols=50  Identities=24%  Similarity=0.713  Sum_probs=42.3

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ...|.||++.|..+++ -+.+||.|.|...|+.+|+..     ....||.||..+.
T Consensus       323 GveCaICms~fiK~d~-~~vlPC~H~FH~~Cv~kW~~~-----y~~~CPvCrt~iP  372 (374)
T COG5540         323 GVECAICMSNFIKNDR-LRVLPCDHRFHVGCVDKWLLG-----YSNKCPVCRTAIP  372 (374)
T ss_pred             CceEEEEhhhhcccce-EEEeccCceechhHHHHHHhh-----hcccCCccCCCCC
Confidence            4789999999965444 568899999999999999986     5779999998754

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=98.45  E-value=1.3e-07  Score=64.95  Aligned_cols=46  Identities=26%  Similarity=0.629  Sum_probs=40.4

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+.|.||.+.|    +.|++..|||.||..|..+-+..      ...|-.|.+.+.
T Consensus       196 PF~C~iCKkdy----~spvvt~CGH~FC~~Cai~~y~k------g~~C~~Cgk~t~  241 (259)
T COG5152         196 PFLCGICKKDY----ESPVVTECGHSFCSLCAIRKYQK------GDECGVCGKATY  241 (259)
T ss_pred             ceeehhchhhc----cchhhhhcchhHHHHHHHHHhcc------CCcceecchhhc
Confidence            57999999999    89999999999999999887775      347999988765

>KOG4159|consensus

Probab=98.43  E-value=1.1e-07  Score=72.24  Aligned_cols=48  Identities=33%  Similarity=0.873  Sum_probs=42.3

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ..++.|.||...+    ..|+++||||+||..||.+.+..      ...||.||..+.
T Consensus        82 ~sef~c~vc~~~l----~~pv~tpcghs~c~~Cl~r~ld~------~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   82 RSEFECCVCSRAL----YPPVVTPCGHSFCLECLDRSLDQ------ETECPLCRDELV  129 (398)
T ss_pred             cchhhhhhhHhhc----CCCccccccccccHHHHHHHhcc------CCCCcccccccc
Confidence            4589999999999    79999999999999999986664      568999998876

>KOG0802|consensus

Probab=98.32  E-value=2.9e-07  Score=72.88  Aligned_cols=51  Identities=33%  Similarity=0.564  Sum_probs=41.2

Q ss_pred             CccccccccccccC-CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDG-GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~-~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ....|+||.+.+.. ....|..++|||.|+..|+..|+..      .-.||.||..+.
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er------~qtCP~CR~~~~  341 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER------QQTCPTCRTVLY  341 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH------hCcCCcchhhhh
Confidence            36889999999841 1122899999999999999999998      448999998443

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.26  E-value=1.5e-06  Score=63.26  Aligned_cols=65  Identities=25%  Similarity=0.629  Sum_probs=49.0

Q ss_pred             ccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM  107 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~  107 (129)
                      .|.|++|..++    +.|...+ |||+||..||...+-.     ..+.||.|...-.+-    +.|.+++....-++.+
T Consensus       274 ~LkCplc~~Ll----rnp~kT~cC~~~fc~eci~~al~d-----sDf~CpnC~rkdvll----d~l~pD~dk~~EvE~~  339 (427)
T COG5222         274 SLKCPLCHCLL----RNPMKTPCCGHTFCDECIGTALLD-----SDFKCPNCSRKDVLL----DGLTPDIDKKLEVEKA  339 (427)
T ss_pred             cccCcchhhhh----hCcccCccccchHHHHHHhhhhhh-----ccccCCCcccccchh----hccCccHHHHHHHHHH
Confidence            49999999999    8999886 9999999999988776     578999997643322    3566665544444443

>KOG0824|consensus

Probab=98.24  E-value=4.1e-07  Score=66.03  Aligned_cols=48  Identities=25%  Similarity=0.499  Sum_probs=41.6

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      .-.|+||+...    ..|+.|+|+|-||.-||+.....     ....|++||..+..
T Consensus         7 ~~eC~IC~nt~----n~Pv~l~C~HkFCyiCiKGsy~n-----dk~~CavCR~pids   54 (324)
T KOG0824|consen    7 KKECLICYNTG----NCPVNLYCFHKFCYICIKGSYKN-----DKKTCAVCRFPIDS   54 (324)
T ss_pred             CCcceeeeccC----CcCccccccchhhhhhhcchhhc-----CCCCCceecCCCCc
Confidence            46799999999    68999999999999999987776     45679999988763

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.24  E-value=5.3e-07  Score=52.67  Aligned_cols=57  Identities=26%  Similarity=0.507  Sum_probs=27.5

Q ss_pred             ccccccccccccCCCCceEee----cCCchhHHHhHHHHHHhccCCC-----CccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLL----PCSHTVCLHCLSRIAASQTRET-----GTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l----~CgH~fC~~Cl~~~~~~~~~~~-----~~~~CP~Cr~~~~~   86 (129)
                      ++.|+||+..+.+.+..|...    .|+..|...||.+|+.......     ....||.|++.+..
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            578999999875444556544    5999999999999998743221     12479999998874

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.12  E-value=1.7e-06  Score=48.52  Aligned_cols=42  Identities=26%  Similarity=0.524  Sum_probs=30.8

Q ss_pred             ccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCcccccc
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPI   79 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~   79 (129)
                      .+.|||.+..|    .+|+.- .|||+|....|.+++..    .....||.
T Consensus        11 ~~~CPiT~~~~----~~PV~s~~C~H~fek~aI~~~i~~----~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPF----EDPVKSKKCGHTFEKEAILQYIQR----NGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-----SSEEEESSS--EEEHHHHHHHCTT----TS-EE-SC
T ss_pred             ccCCCCcCChh----hCCcCcCCCCCeecHHHHHHHHHh----cCCCCCCC
Confidence            68999999999    899876 69999999999999944    46889998

>KOG2879|consensus

Probab=98.10  E-value=1.7e-06  Score=62.15  Aligned_cols=49  Identities=24%  Similarity=0.629  Sum_probs=41.1

Q ss_pred             CccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ....|++|.+.-    ..|.+.. |||.||..|+......    ...+.||.|...+.
T Consensus       238 ~~~~C~~Cg~~P----tiP~~~~~C~HiyCY~Ci~ts~~~----~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPP----TIPHVIGKCGHIYCYYCIATSRLW----DASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCC----CCCeeeccccceeehhhhhhhhcc----hhhcccCccCCCCc
Confidence            478999999998    6888775 9999999999987665    34789999988765

>KOG1813|consensus

Probab=98.07  E-value=1.6e-06  Score=62.89  Aligned_cols=46  Identities=22%  Similarity=0.527  Sum_probs=39.8

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+.|-||.+.|    ..|++..|||+||..|....+..      .-.|.+|.+.+.
T Consensus       241 Pf~c~icr~~f----~~pVvt~c~h~fc~~ca~~~~qk------~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYF----YRPVVTKCGHYFCEVCALKPYQK------GEKCYVCSQQTH  286 (313)
T ss_pred             Ccccccccccc----ccchhhcCCceeehhhhcccccc------CCcceecccccc
Confidence            45699999999    89999999999999998876665      348999998876

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.96  E-value=1.8e-05  Score=42.98  Aligned_cols=44  Identities=34%  Similarity=0.789  Sum_probs=35.0

Q ss_pred             ccccccccccCCCCceEeecCC-----chhHHHhHHHHHHhccCCCCccccccCC
Q psy11857         32 TCGTCLCMYDGGEHTPKLLPCS-----HTVCLHCLSRIAASQTRETGTLRCPICR   81 (129)
Q Consensus        32 ~C~iC~~~~~~~~~~p~~l~Cg-----H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr   81 (129)
                      .|.||++  .+++.++.+.||.     |.+...|+.+|+..    .....||+|+
T Consensus         1 ~CrIC~~--~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~----~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD--EGDEGDPLVSPCRCKGSLKYVHQECLERWINE----SGNKTCEICK   49 (49)
T ss_pred             CccCCCC--CCCCCCeeEeccccCCchhHHHHHHHHHHHHH----cCCCcCCCCC
Confidence            4889998  2344688888985     78999999999998    3456899984

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0804|consensus

Probab=97.95  E-value=2.8e-06  Score=64.74  Aligned_cols=50  Identities=28%  Similarity=0.563  Sum_probs=39.2

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+..+||||++.++....--+.+.|.|+|...|+..|+..        .||+||....
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~--------scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS--------SCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC--------cChhhhhhcC
Confidence            3578999999999732222356679999999999999876        8999987544

>KOG0297|consensus

Probab=97.95  E-value=5.7e-06  Score=63.21  Aligned_cols=51  Identities=27%  Similarity=0.747  Sum_probs=43.4

Q ss_pred             ccCccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      .++.+.|++|...+    .+|+.. .|||.||..|+..|...      ...||.|+......
T Consensus        18 ~~~~l~C~~C~~vl----~~p~~~~~cgh~fC~~C~~~~~~~------~~~cp~~~~~~~~~   69 (391)
T KOG0297|consen   18 LDENLLCPICMSVL----RDPVQTTTCGHRFCAGCLLESLSN------HQKCPVCRQELTQA   69 (391)
T ss_pred             CcccccCccccccc----cCCCCCCCCCCcccccccchhhcc------CcCCcccccccchh
Confidence            45589999999999    899984 89999999999999886      45899998776644

>KOG4172|consensus

Probab=97.86  E-value=2.7e-06  Score=46.56  Aligned_cols=47  Identities=30%  Similarity=0.583  Sum_probs=38.0

Q ss_pred             ccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ..+|.||.+.-    .+.++..|||. +|..|-.+.+..     ....||+||+++.
T Consensus         7 ~dECTICye~p----vdsVlYtCGHMCmCy~Cg~rl~~~-----~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHP----VDSVLYTCGHMCMCYACGLRLKKA-----LHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCc----chHHHHHcchHHhHHHHHHHHHHc-----cCCcCcchhhHHH
Confidence            46899999877    57777789997 899998887775     3558999998764

>KOG1039|consensus

Probab=97.84  E-value=9.7e-06  Score=60.67  Aligned_cols=59  Identities=24%  Similarity=0.617  Sum_probs=40.5

Q ss_pred             CccccccccccccCCC---CceEee-cCCchhHHHhHHHHHHhcc-CCCCccccccCCcceeeC
Q psy11857         29 SFLTCGTCLCMYDGGE---HTPKLL-PCSHTVCLHCLSRIAASQT-RETGTLRCPICREQITIP   87 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~---~~p~~l-~CgH~fC~~Cl~~~~~~~~-~~~~~~~CP~Cr~~~~~~   87 (129)
                      .+..|.||++...+..   +.--+| +|.|+||..|+..|..... +......||+||......
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v  223 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV  223 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence            4789999999875211   001133 5999999999999985521 122367999999877654

>KOG1002|consensus

Probab=97.80  E-value=1.5e-05  Score=62.15  Aligned_cols=56  Identities=23%  Similarity=0.549  Sum_probs=45.8

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      ...+..|.+|.+.-    .+++...|.|.||..|+..+...... +....||.|...+...
T Consensus       533 nk~~~~C~lc~d~a----ed~i~s~ChH~FCrlCi~eyv~~f~~-~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  533 NKGEVECGLCHDPA----EDYIESSCHHKFCRLCIKEYVESFME-NNNVTCPVCHIGLSID  588 (791)
T ss_pred             ccCceeecccCChh----hhhHhhhhhHHHHHHHHHHHHHhhhc-ccCCCCcccccccccc
Confidence            34578999999998    79999999999999999988776433 3458999998876643

>KOG1785|consensus

Probab=97.80  E-value=9e-06  Score=61.39  Aligned_cols=47  Identities=32%  Similarity=0.697  Sum_probs=38.7

Q ss_pred             cccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        31 l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      -.|.||.+.=    ++-.+-||||-.|..|+..|....    ..-.||+||..+.
T Consensus       370 eLCKICaend----KdvkIEPCGHLlCt~CLa~WQ~sd----~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  370 ELCKICAEND----KDVKIEPCGHLLCTSCLAAWQDSD----EGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHHhhccC----CCcccccccchHHHHHHHhhcccC----CCCCCCceeeEec
Confidence            3699999876    777788999999999999998662    2558999997765

>KOG3161|consensus

Probab=97.74  E-value=1.2e-05  Score=63.88  Aligned_cols=68  Identities=22%  Similarity=0.494  Sum_probs=48.7

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLD  105 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~  105 (129)
                      +.+.|+||...|......|+.+-|||+.|..|+...+..        .|| |...-......+...+.|+++.+.+.
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~--------scp-~~~De~~~~~~~~e~p~n~alL~~~~   77 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA--------SCP-TKRDEDSSLMQLKEEPRNYALLRREH   77 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc--------cCC-CCccccchhcChhhcchhHHHHHhhc
Confidence            357899997777666678999999999999999987776        566 32222222234567888888766544

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=97.71  E-value=2.6e-05  Score=41.91  Aligned_cols=47  Identities=28%  Similarity=0.552  Sum_probs=24.4

Q ss_pred             cccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857         33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI   84 (129)
Q Consensus        33 C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~   84 (129)
                      ||+|.+.++.++.+-.-=+||+-+|..|..+....     ....||.||+.+
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-----~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-----EGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-----S-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-----cCCCCCCCCCCC
Confidence            78999998765554333369999999999988763     356899999864

>KOG1493|consensus

Probab=97.65  E-value=2e-05  Score=46.06  Aligned_cols=53  Identities=32%  Similarity=0.786  Sum_probs=43.1

Q ss_pred             cccccccccccC--------CCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         31 LTCGTCLCMYDG--------GEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        31 l~C~iC~~~~~~--------~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      -.|.||.-.|++        +|.-|.++- |.|.|..-||.+|+..+   ++...||.||+...+
T Consensus        21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~---tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen   21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTP---TSQGQCPMCRQTWQF   82 (84)
T ss_pred             CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCc---cccccCCcchheeEe
Confidence            378888888773        667788885 99999999999999875   355789999988764

>KOG4265|consensus

Probab=97.62  E-value=4.8e-05  Score=56.62  Aligned_cols=47  Identities=36%  Similarity=0.760  Sum_probs=39.8

Q ss_pred             CccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ....|-||+..-    ++-++|||.|. .|..|.....-+      ...||+||..+.
T Consensus       289 ~gkeCVIClse~----rdt~vLPCRHLCLCs~Ca~~Lr~q------~n~CPICRqpi~  336 (349)
T KOG4265|consen  289 SGKECVICLSES----RDTVVLPCRHLCLCSGCAKSLRYQ------TNNCPICRQPIE  336 (349)
T ss_pred             CCCeeEEEecCC----cceEEecchhhehhHhHHHHHHHh------hcCCCccccchH
Confidence            467899999988    89999999997 899999887644      347999998765

>KOG1814|consensus

Probab=97.59  E-value=5.9e-05  Score=57.11  Aligned_cols=60  Identities=33%  Similarity=0.633  Sum_probs=44.0

Q ss_pred             ccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCC--CccccccCCccee
Q psy11857         25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRET--GTLRCPICREQIT   85 (129)
Q Consensus        25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~--~~~~CP~Cr~~~~   85 (129)
                      .+....+.|.||++... |...-+.+||+|.||..|+..++..+..++  ....||.+.-.-.
T Consensus       179 ~F~~slf~C~ICf~e~~-G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~  240 (445)
T KOG1814|consen  179 KFVNSLFDCCICFEEQM-GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV  240 (445)
T ss_pred             HHHhhcccceeeehhhc-CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCccc
Confidence            44455789999999884 444556889999999999999887753322  4578988765543

>KOG1734|consensus

Probab=97.51  E-value=1.6e-05  Score=57.11  Aligned_cols=54  Identities=20%  Similarity=0.451  Sum_probs=42.4

Q ss_pred             ccccccccccccCCC------CceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         30 FLTCGTCLCMYDGGE------HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~------~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      +-.|.+|.+.++.+.      .+-..|+|+|.|...||..|---    +..-+||.|++.+.+.
T Consensus       224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv----GKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV----GKKQTCPYCKEKVDLK  283 (328)
T ss_pred             cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee----cCCCCCchHHHHhhHh
Confidence            567999999875211      13457899999999999999766    4567999999988764

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=97.50  E-value=0.00024  Score=41.97  Aligned_cols=50  Identities=26%  Similarity=0.573  Sum_probs=39.2

Q ss_pred             ccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         32 TCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        32 ~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      .|+-|+.-.+.++.-|+.-- |.|.|..-||.+|+..      ...||++++...+-
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T------k~~CPld~q~w~~~   83 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT------KGVCPLDRQTWVLA   83 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh------CCCCCCCCceeEEe
Confidence            46666665555666777775 9999999999999997      34899999988754

>KOG1941|consensus

Probab=97.47  E-value=7.1e-05  Score=56.50  Aligned_cols=51  Identities=37%  Similarity=0.664  Sum_probs=40.7

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI   84 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~   84 (129)
                      .+.|..|.+.+...+..---|||.|+|..+|+..++.+    .....||.||+..
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~----n~~rsCP~Crklr  415 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILEN----NGTRSCPNCRKLR  415 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHh----CCCCCCccHHHHH
Confidence            68999999998643334446799999999999999977    3577999999543

>KOG1645|consensus

Probab=97.45  E-value=9.1e-05  Score=56.11  Aligned_cols=52  Identities=29%  Similarity=0.659  Sum_probs=42.1

Q ss_pred             cccccccccccc-CCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYD-GGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~-~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      -..||||++.+. .+++.-+.+.|||-|-..||.+|+.+    .....||.|...-.
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k----~~~~~cp~c~~kat   56 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK----KTKMQCPLCSGKAT   56 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh----hhhhhCcccCChhH
Confidence            468999999886 35566667789999999999999964    56789999976543

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.32  E-value=5.6e-05  Score=41.58  Aligned_cols=44  Identities=25%  Similarity=0.600  Sum_probs=32.8

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ...|-.|...-    ...++++|||..|..|..-...        ..||+|.+.+.
T Consensus         7 ~~~~~~~~~~~----~~~~~~pCgH~I~~~~f~~~rY--------ngCPfC~~~~~   50 (55)
T PF14447_consen    7 EQPCVFCGFVG----TKGTVLPCGHLICDNCFPGERY--------NGCPFCGTPFE   50 (55)
T ss_pred             ceeEEEccccc----cccccccccceeeccccChhhc--------cCCCCCCCccc
Confidence            44555566554    5678999999999999865433        37999998876

>KOG0827|consensus

Probab=97.32  E-value=0.00013  Score=55.00  Aligned_cols=49  Identities=20%  Similarity=0.513  Sum_probs=34.4

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCC
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR   81 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr   81 (129)
                      ...|.||-+.+.....-.-+-.|||+|...|+.+|+...+   ....||.|+
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P---s~R~cpic~   52 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP---SNRGCPICQ   52 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC---ccCCCCcee
Confidence            3579999776642111111224999999999999999743   236899998

>KOG0828|consensus

Probab=97.19  E-value=0.0002  Score=55.54  Aligned_cols=54  Identities=26%  Similarity=0.496  Sum_probs=39.5

Q ss_pred             ccCccccccccccccC--CC-----------CceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         27 NESFLTCGTCLCMYDG--GE-----------HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~--~~-----------~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+...-|+||+...+-  +.           +.-...||.|.|...|+.+|+..     ....||.||..+.
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-----ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-----YKLICPVCRCPLP  634 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-----hcccCCccCCCCC
Confidence            3446789999986641  11           11234589999999999999985     5679999998653

>KOG4739|consensus

Probab=97.13  E-value=0.00015  Score=51.46  Aligned_cols=56  Identities=29%  Similarity=0.707  Sum_probs=38.3

Q ss_pred             ccccccccccccCCCCceEe-ecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChh
Q psy11857         30 FLTCGTCLCMYDGGEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPS   97 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~-l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n   97 (129)
                      ...|..|+..-+   .+|.. +.|+|.||..|......        -.||.|++.+... .-..++|.+
T Consensus         3 ~VhCn~C~~~~~---~~~f~LTaC~HvfC~~C~k~~~~--------~~C~lCkk~ir~i-~l~~slp~~   59 (233)
T KOG4739|consen    3 FVHCNKCFRFPS---QDPFFLTACRHVFCEPCLKASSP--------DVCPLCKKSIRII-QLNRSLPTD   59 (233)
T ss_pred             eEEeccccccCC---CCceeeeechhhhhhhhcccCCc--------cccccccceeeee-ecccccchh
Confidence            567888887765   56664 46999999999864322        2899999986642 222445544

>PF04641 Rtf2: Rtf2 RING-finger

Probab=97.10  E-value=0.00061  Score=49.43  Aligned_cols=51  Identities=22%  Similarity=0.490  Sum_probs=39.1

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ...+.|||....|++..+--.+.+|||.|+..++.+.. .      ...||.|...+.
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~------~~~Cp~c~~~f~  161 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K------SKKCPVCGKPFT  161 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c------cccccccCCccc
Confidence            45789999999996433333345899999999999874 1      336999999877

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=97.02  E-value=0.00071  Score=50.42  Aligned_cols=52  Identities=25%  Similarity=0.506  Sum_probs=41.4

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ++-.||+|.+.++..|+.-.--+||-..|.-|+......     -...||.||+.+.
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-----lngrcpacrr~y~   64 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-----LNGRCPACRRKYD   64 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh-----ccCCChHhhhhcc
Confidence            345599999999877776666689999999999877665     3458999998866

>KOG4692|consensus

Probab=97.01  E-value=0.00048  Score=51.57  Aligned_cols=48  Identities=23%  Similarity=0.568  Sum_probs=40.2

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .++-.||||..--    ...+..||+|.-|..||.+++.+      ...|=+|+..+.
T Consensus       420 sEd~lCpICyA~p----i~Avf~PC~H~SC~~CI~qHlmN------~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAGP----INAVFAPCSHRSCYGCITQHLMN------CKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceeccc----chhhccCCCCchHHHHHHHHHhc------CCeeeEecceee
Confidence            3578899999876    67888899999999999999886      558999977654

>KOG2817|consensus

Probab=96.94  E-value=0.00066  Score=51.34  Aligned_cols=52  Identities=23%  Similarity=0.554  Sum_probs=40.7

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI   84 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~   84 (129)
                      ..+.|||=.+.- .++..|+.|.|||..+..-+.+...+.   ...+.||.|-...
T Consensus       333 SvF~CPVlKeqt-sdeNPPm~L~CGHVISkdAlnrLS~ng---~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  333 SVFICPVLKEQT-SDENPPMMLICGHVISKDALNRLSKNG---SQSFKCPYCPVEQ  384 (394)
T ss_pred             ceeecccchhhc-cCCCCCeeeeccceecHHHHHHHhhCC---CeeeeCCCCCccc
Confidence            468999866654 345789999999999999999887762   2369999996554

>KOG3002|consensus

Probab=96.92  E-value=0.00058  Score=50.44  Aligned_cols=57  Identities=21%  Similarity=0.583  Sum_probs=41.0

Q ss_pred             CccccccccccccCCCCceEeec--CCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLP--CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~--CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      +.+.||||.+.+    ..| +..  =||..|..|-.+.         ...||.||..+.        -..++++..+++.
T Consensus        47 ~lleCPvC~~~l----~~P-i~QC~nGHlaCssC~~~~---------~~~CP~Cr~~~g--------~~R~~amEkV~e~  104 (299)
T KOG3002|consen   47 DLLDCPVCFNPL----SPP-IFQCDNGHLACSSCRTKV---------SNKCPTCRLPIG--------NIRCRAMEKVAEA  104 (299)
T ss_pred             hhccCchhhccC----ccc-ceecCCCcEehhhhhhhh---------cccCCccccccc--------cHHHHHHHHHHHh
Confidence            578999999999    455 444  5899999998633         347999998765        1246666666554


Q ss_pred             H
Q psy11857        107 M  107 (129)
Q Consensus       107 ~  107 (129)
                      .
T Consensus       105 ~  105 (299)
T KOG3002|consen  105 V  105 (299)
T ss_pred             c
Confidence            4

>KOG1812|consensus

Probab=96.92  E-value=0.00065  Score=51.92  Aligned_cols=78  Identities=17%  Similarity=0.334  Sum_probs=50.7

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS  108 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~  108 (129)
                      ...|.||...+...+..-.+..|+|-||..|+.+++......+....||.-+-...++......+-++ .+..+++...
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~  223 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRL  223 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHH
Confidence            56899999433222122235679999999999999887655567889988666666555555555544 4444444433

>KOG0825|consensus

Probab=96.88  E-value=0.00023  Score=58.03  Aligned_cols=49  Identities=18%  Similarity=0.384  Sum_probs=36.6

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .-.||+|+..+..+.. -.-.+|+|.||..||..|-..      .-+||+||..+.
T Consensus       123 ~~~CP~Ci~s~~DqL~-~~~k~c~H~FC~~Ci~sWsR~------aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLE-ESEKHTAHYFCEECVGSWSRC------AQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhHHHHHHHHHhh-ccccccccccHHHHhhhhhhh------cccCchhhhhhh
Confidence            4679999998842111 112369999999999999876      458999998765

>KOG3800|consensus

Probab=96.73  E-value=0.0013  Score=47.86  Aligned_cols=49  Identities=27%  Similarity=0.645  Sum_probs=34.5

Q ss_pred             cccccccc-ccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         32 TCGTCLCM-YDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        32 ~C~iC~~~-~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .||+|... |...+-.-.+-+|||+.|.+|+...+..     +...||.|...+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-----g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-----GPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhc-----CCCCCCcccchhh
Confidence            58888753 4211111122279999999999999986     5678999987665

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.73  E-value=0.00065  Score=56.57  Aligned_cols=54  Identities=28%  Similarity=0.624  Sum_probs=40.2

Q ss_pred             cCcccccccccccc-CCCCceE-ee-cCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYD-GGEHTPK-LL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~-~~~~~p~-~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ...-.|+||..++. -...-|- .- .|.|-|...|+-+|++.    ++.-.||.||..++
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S----s~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS----SARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh----cCCCCCCccccccc
Confidence            44668999999885 1112232 22 49999999999999998    56789999997654

>KOG4275|consensus

Probab=96.70  E-value=0.00035  Score=50.97  Aligned_cols=42  Identities=31%  Similarity=0.696  Sum_probs=34.2

Q ss_pred             ccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ...|.||++..    ++-+.|+|||. -|.+|=.          ....||+||+.+.
T Consensus       300 ~~LC~ICmDaP----~DCvfLeCGHmVtCt~CGk----------rm~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAP----RDCVFLECGHMVTCTKCGK----------RMNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCC----cceEEeecCcEEeehhhcc----------ccccCchHHHHHH
Confidence            56799999999    89999999996 4888843          3347999998754

>KOG3039|consensus

Probab=96.66  E-value=0.0012  Score=47.17  Aligned_cols=51  Identities=14%  Similarity=0.277  Sum_probs=41.9

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ..+.||+|.+.+++...-.+.-+|||.||..|+.+.+..      ...||+|.+...
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~------D~v~pv~d~plk  270 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK------DMVDPVTDKPLK  270 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc------cccccCCCCcCc
Confidence            468999999999765555556689999999999999886      568999987755

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=96.33  E-value=0.0059  Score=40.83  Aligned_cols=53  Identities=30%  Similarity=0.659  Sum_probs=36.7

Q ss_pred             CccccccccccccCCCCceEeecCC------------chh-HHHhHHHHHHhccC-------------------------
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCS------------HTV-CLHCLSRIAASQTR-------------------------   70 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~Cg------------H~f-C~~Cl~~~~~~~~~-------------------------   70 (129)
                      ++..||||++.-    +++++|-|.            .+| ...|+.++.+....                         
T Consensus         1 ed~~CpICme~P----HNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (162)
T PF07800_consen    1 EDVTCPICMEHP----HNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQ   76 (162)
T ss_pred             CCccCceeccCC----CceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccc
Confidence            367899999999    899988543            222 35788876654211                         


Q ss_pred             CCCccccccCCccee
Q psy11857         71 ETGTLRCPICREQIT   85 (129)
Q Consensus        71 ~~~~~~CP~Cr~~~~   85 (129)
                      ......||+||..+.
T Consensus        77 ~~~~L~CPLCRG~V~   91 (162)
T PF07800_consen   77 EQPELACPLCRGEVK   91 (162)
T ss_pred             ccccccCccccCcee
Confidence            113678999998876

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.30  E-value=0.0045  Score=46.40  Aligned_cols=53  Identities=28%  Similarity=0.669  Sum_probs=39.7

Q ss_pred             cccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857         24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI   84 (129)
Q Consensus        24 ~~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~   84 (129)
                      ++-.++...|-||.+-.    .-.-.+||+|..|.-|..+...-    .....||+||...
T Consensus        55 ddtDEen~~C~ICA~~~----TYs~~~PC~H~~CH~Ca~RlRAL----Y~~K~C~~CrTE~  107 (493)
T COG5236          55 DDTDEENMNCQICAGST----TYSARYPCGHQICHACAVRLRAL----YMQKGCPLCRTET  107 (493)
T ss_pred             cccccccceeEEecCCc----eEEEeccCCchHHHHHHHHHHHH----HhccCCCcccccc
Confidence            33345678899999987    35568899999999998775444    2356899999653

>KOG1940|consensus

Probab=96.22  E-value=0.0026  Score=46.40  Aligned_cols=47  Identities=23%  Similarity=0.566  Sum_probs=40.4

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE   82 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~   82 (129)
                      ...||||.+.+......|..++|||.....|+......     + ..||.|.+
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~-----~-y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE-----G-YTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc-----C-CCCCcccc
Confidence            45699999988777788889999999999999887775     4 89999987

>KOG1001|consensus

Probab=96.20  E-value=0.0019  Score=52.59  Aligned_cols=46  Identities=24%  Similarity=0.666  Sum_probs=38.8

Q ss_pred             cccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        31 l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ..|.+|.+ .    ..+++..|||.||..|+...+...    ....||.||..+.
T Consensus       455 ~~c~ic~~-~----~~~~it~c~h~~c~~c~~~~i~~~----~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD-L----DSFFITRCGHDFCVECLKKSIQQS----ENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc-c----ccceeecccchHHHHHHHhccccc----cCCCCcHHHHHHH
Confidence            78999999 6    688899999999999999988873    3448999986654

>PHA03096 p28-like protein; Provisional

Probab=96.04  E-value=0.0077  Score=44.28  Aligned_cols=49  Identities=18%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             cccccccccccC---CCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857         31 LTCGTCLCMYDG---GEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICRE   82 (129)
Q Consensus        31 l~C~iC~~~~~~---~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~   82 (129)
                      -.|.||++....   .++.--+|+ |.|.||..|+..|.....   ..-.||.|+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~---~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL---YKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh---hcccCccccc
Confidence            679999987542   112222454 999999999999988743   2334555543

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=96.03  E-value=0.0069  Score=39.36  Aligned_cols=50  Identities=20%  Similarity=0.575  Sum_probs=40.6

Q ss_pred             ccccccccccccCCCCceEee-c---CCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLL-P---CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l-~---CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      ..+|.||.+..    .+.+.| |   ||-..|..|-...|...   .-...||.|+..+..
T Consensus        80 lYeCnIC~etS----~ee~FLKPneCCgY~iCn~Cya~LWK~~---~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   80 LYECNICKETS----AEERFLKPNECCGYSICNACYANLWKFC---NLYPVCPVCKTSFKS  133 (140)
T ss_pred             ceeccCccccc----chhhcCCcccccchHHHHHHHHHHHHHc---ccCCCCCcccccccc
Confidence            57899999998    466666 2   99999999999988874   245689999988764

>KOG1571|consensus

Probab=95.96  E-value=0.0026  Score=47.66  Aligned_cols=43  Identities=30%  Similarity=0.729  Sum_probs=33.2

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ...|-||.+..    .+.+.+||||.-|  |..-...       ...||.||..+.
T Consensus       305 p~lcVVcl~e~----~~~~fvpcGh~cc--ct~cs~~-------l~~CPvCR~rI~  347 (355)
T KOG1571|consen  305 PDLCVVCLDEP----KSAVFVPCGHVCC--CTLCSKH-------LPQCPVCRQRIR  347 (355)
T ss_pred             CCceEEecCCc----cceeeecCCcEEE--chHHHhh-------CCCCchhHHHHH
Confidence            56799999988    6889999999966  6543322       346999998765

>KOG4185|consensus

Probab=95.96  E-value=0.0024  Score=46.99  Aligned_cols=49  Identities=29%  Similarity=0.708  Sum_probs=41.1

Q ss_pred             cccccccccccc--CCCCceEeec--------CCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857         30 FLTCGTCLCMYD--GGEHTPKLLP--------CSHTVCLHCLSRIAASQTRETGTLRCPICREQ   83 (129)
Q Consensus        30 ~l~C~iC~~~~~--~~~~~p~~l~--------CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~   83 (129)
                      +..|.||...|+  .....|.++.        |||+.|..|+.......    . ..||.|+..
T Consensus       207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~----~-~~cp~~~~~  265 (296)
T KOG4185|consen  207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA----G-IKCPFCTWS  265 (296)
T ss_pred             HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh----h-hcCCcccce
Confidence            467999999987  4667888888        99999999999988772    3 899999874

>KOG4362|consensus

Probab=95.85  E-value=0.0015  Score=52.79  Aligned_cols=50  Identities=32%  Similarity=0.780  Sum_probs=42.4

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ..+.|+||...+    ..|+.+.|.|.||..|+...+....   ....||+|+..+.
T Consensus        20 k~lEc~ic~~~~----~~p~~~kc~~~~l~~~~n~~f~~~~---~~~~~~lc~~~~e   69 (684)
T KOG4362|consen   20 KILECPICLEHV----KEPSLLKCDHIFLKFCLNKLFESKK---GPKQCALCKSDIE   69 (684)
T ss_pred             hhccCCceeEEe----eccchhhhhHHHHhhhhhceeeccC---ccccchhhhhhhh
Confidence            479999999999    7999999999999999988777643   3778999986655

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=95.82  E-value=0.0028  Score=45.17  Aligned_cols=51  Identities=27%  Similarity=0.628  Sum_probs=35.7

Q ss_pred             cccccccccc-ccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccc--cCCccee
Q psy11857         30 FLTCGTCLCM-YDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCP--ICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~-~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP--~Cr~~~~   85 (129)
                      +-.||+|... |-..+..-.+-| |-|.+|.+|+.+.+..     +...||  -|.+.+.
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-----GpAqCP~~gC~kILR   64 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-----GPAQCPYKGCGKILR   64 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-----CCCCCCCccHHHHHH
Confidence            5689999863 422222222336 9999999999999986     567899  6876544

>KOG3970|consensus

Probab=95.63  E-value=0.022  Score=40.34  Aligned_cols=56  Identities=25%  Similarity=0.484  Sum_probs=43.2

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCC--CCccccccCCcceeeC
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRE--TGTLRCPICREQITIP   87 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~--~~~~~CP~Cr~~~~~~   87 (129)
                      .-.|.+|...+.+  .+.+.|-|-|.|..+|+..+..+-+.+  .....||.|...+..+
T Consensus        50 ~pNC~LC~t~La~--gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp  107 (299)
T KOG3970|consen   50 NPNCRLCNTPLAS--GDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP  107 (299)
T ss_pred             CCCCceeCCcccc--CcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence            4679999998865  456788999999999999998774322  2357899998877633

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.61  E-value=0.01  Score=43.97  Aligned_cols=52  Identities=25%  Similarity=0.556  Sum_probs=39.9

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcce
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI   84 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~   84 (129)
                      ..+.||+=.+.- .++..|+++.|||..-..-+.+..++.   ...+.||.|-...
T Consensus       335 s~FiCPVlKe~~-t~ENpP~ml~CgHVIskeal~~LS~nG---~~~FKCPYCP~~~  386 (396)
T COG5109         335 SLFICPVLKELC-TDENPPVMLECGHVISKEALSVLSQNG---VLSFKCPYCPEMS  386 (396)
T ss_pred             ceeeccccHhhh-cccCCCeeeeccceeeHHHHHHHhhcC---cEEeeCCCCCcch
Confidence            468999866554 344689999999999999988876662   3589999996543

>KOG2930|consensus

Probab=95.31  E-value=0.017  Score=35.89  Aligned_cols=29  Identities=28%  Similarity=0.669  Sum_probs=25.3

Q ss_pred             cCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         51 PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        51 ~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .|.|.|..-||.+|++.      ...||+|.+.-.
T Consensus        80 ~CNHaFH~hCisrWlkt------r~vCPLdn~eW~  108 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKT------RNVCPLDNKEWV  108 (114)
T ss_pred             ecchHHHHHHHHHHHhh------cCcCCCcCccee
Confidence            59999999999999997      458999988754

>KOG2932|consensus

Probab=95.27  E-value=0.0059  Score=45.07  Aligned_cols=45  Identities=24%  Similarity=0.718  Sum_probs=31.5

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .-.|--|.....   .--++++|.|.||.+|...-        ..+.||.|...+.
T Consensus        90 VHfCd~Cd~PI~---IYGRmIPCkHvFCl~CAr~~--------~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   90 VHFCDRCDFPIA---IYGRMIPCKHVFCLECARSD--------SDKICPLCDDRVQ  134 (389)
T ss_pred             eEeecccCCcce---eeecccccchhhhhhhhhcC--------ccccCcCcccHHH
Confidence            346778876552   33468899999999997532        2457999976543

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.17  E-value=0.029  Score=37.62  Aligned_cols=51  Identities=24%  Similarity=0.374  Sum_probs=37.7

Q ss_pred             cCccccccccccccCCCCceEeecCC--c---hhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCS--H---TVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~Cg--H---~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      .....|-||.+..+     +..-||.  .   ....+|+.+|...    ++...|+.|+..+...
T Consensus         6 ~~~~~CRIC~~~~~-----~~~~PC~CkGs~k~VH~sCL~rWi~~----s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          6 LMDKCCWICKDEYD-----VVTNYCNCKNENKIVHKECLEEWINT----SKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCeeEecCCCCC-----CccCCcccCCCchHHHHHHHHHHHhc----CCCCcccccCCeEEEE
Confidence            34678999987752     2334654  4   3489999999997    5678999999887754

>KOG1428|consensus

Probab=95.05  E-value=0.039  Score=48.71  Aligned_cols=55  Identities=25%  Similarity=0.494  Sum_probs=38.7

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCC----ccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETG----TLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~----~~~CP~Cr~~~~   85 (129)
                      +-.|-||+..- .+....+.|.|+|.|...|..+.+.....+..    -+.||+|..++.
T Consensus      3486 DDmCmICFTE~-L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3486 DDMCMICFTEA-LSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             CceEEEEehhh-hCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            55688887532 12234568899999999999998877544322    368999987654

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.98  E-value=0.018  Score=31.17  Aligned_cols=47  Identities=28%  Similarity=0.561  Sum_probs=21.9

Q ss_pred             ccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICRE   82 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~   82 (129)
                      .+.||+-...+    ..|+.. .|.|.-|.+= ..++..... ...+.||.|.+
T Consensus         2 sL~CPls~~~i----~~P~Rg~~C~H~~CFDl-~~fl~~~~~-~~~W~CPiC~~   49 (50)
T PF02891_consen    2 SLRCPLSFQRI----RIPVRGKNCKHLQCFDL-ESFLESNQR-TPKWKCPICNK   49 (50)
T ss_dssp             ESB-TTTSSB-----SSEEEETT--SS--EEH-HHHHHHHHH-S---B-TTT--
T ss_pred             eeeCCCCCCEE----EeCccCCcCcccceECH-HHHHHHhhc-cCCeECcCCcC
Confidence            47899999999    678765 5999876442 222222110 34689999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG2114|consensus

Probab=94.76  E-value=0.04  Score=45.74  Aligned_cols=40  Identities=28%  Similarity=0.657  Sum_probs=32.4

Q ss_pred             ccccccccccccCCCCceE-eecCCchhHHHhHHHHHHhccCCCCccccccCCc
Q psy11857         30 FLTCGTCLCMYDGGEHTPK-LLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE   82 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~-~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~   82 (129)
                      .-.|..|.-.+    .-|. ...|||.|...|+.    .     +...||.|+.
T Consensus       840 ~skCs~C~~~L----dlP~VhF~CgHsyHqhC~e----~-----~~~~CP~C~~  880 (933)
T KOG2114|consen  840 VSKCSACEGTL----DLPFVHFLCGHSYHQHCLE----D-----KEDKCPKCLP  880 (933)
T ss_pred             eeeecccCCcc----ccceeeeecccHHHHHhhc----c-----CcccCCccch
Confidence            46899999999    4565 55799999999997    1     3668999965

>KOG0826|consensus

Probab=94.59  E-value=0.025  Score=42.09  Aligned_cols=45  Identities=20%  Similarity=0.454  Sum_probs=36.8

Q ss_pred             CccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQ   83 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~   83 (129)
                      +.-.||+|...-    .+|.++. -|-.||..|+..+...      ...||+=..+
T Consensus       299 ~~~~CpvClk~r----~Nptvl~vSGyVfCY~Ci~~Yv~~------~~~CPVT~~p  344 (357)
T KOG0826|consen  299 DREVCPVCLKKR----QNPTVLEVSGYVFCYPCIFSYVVN------YGHCPVTGYP  344 (357)
T ss_pred             ccccChhHHhcc----CCCceEEecceEEeHHHHHHHHHh------cCCCCccCCc
Confidence            466899999998    7888887 6999999999999987      4479965443

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.40  E-value=0.014  Score=36.22  Aligned_cols=32  Identities=22%  Similarity=0.526  Sum_probs=24.6

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS   62 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~   62 (129)
                      +.-.|++|.+.+..  ..-.+.||||.|+..|+.
T Consensus        77 ~~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence            46779999999842  233366999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=94.25  E-value=0.028  Score=30.05  Aligned_cols=42  Identities=33%  Similarity=0.744  Sum_probs=25.6

Q ss_pred             cccccccccCCCCceEeecCCch-----hHHHhHHHHHHhccCCCCccccccC
Q psy11857         33 CGTCLCMYDGGEHTPKLLPCSHT-----VCLHCLSRIAASQTRETGTLRCPIC   80 (129)
Q Consensus        33 C~iC~~~~~~~~~~p~~l~CgH~-----fC~~Cl~~~~~~~~~~~~~~~CP~C   80 (129)
                      |-||++..++  ..|.+.||+-.     ....|+.+|+...    +...|++|
T Consensus         1 CrIC~~~~~~--~~~li~pC~C~Gs~~~vH~~CL~~W~~~~----~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEE--DEPLISPCRCKGSMKYVHRSCLERWIRES----GNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SS--SS-EE-SSS-SSCCGSEECCHHHHHHHHH----T-SB-TTT
T ss_pred             CeEeCCcCCC--CCceecccccCCCcchhHHHHHHHHHHhc----CCCcCCCC
Confidence            6788887643  22678886543     4778999999983    46678876

>KOG1815|consensus

Probab=93.62  E-value=0.056  Score=42.20  Aligned_cols=47  Identities=28%  Similarity=0.656  Sum_probs=35.0

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCc--ccccc
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGT--LRCPI   79 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~--~~CP~   79 (129)
                      ...|.||.+.+.   .....+.|||.||..|+..++......+..  +.||.
T Consensus        70 ~~~c~ic~~~~~---~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~  118 (444)
T KOG1815|consen   70 DVQCGICVESYD---GEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPA  118 (444)
T ss_pred             cccCCcccCCCc---chhhhcCCCcHHHHHHHHHHhhheeeccccccccCCC
Confidence            578999999983   135566899999999999988775432222  67765

>KOG4445|consensus

Probab=93.54  E-value=0.043  Score=40.50  Aligned_cols=61  Identities=26%  Similarity=0.562  Sum_probs=41.4

Q ss_pred             CccccccccccccCCCCc-eEeecCCchhHHHhHHHHHHhc-----------------cCCCCccccccCCcceeeCCCC
Q psy11857         29 SFLTCGTCLCMYDGGEHT-PKLLPCSHTVCLHCLSRIAASQ-----------------TRETGTLRCPICREQITIPRGG   90 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~-p~~l~CgH~fC~~Cl~~~~~~~-----------------~~~~~~~~CP~Cr~~~~~~~~~   90 (129)
                      ....|.||+--|.+  .+ -..++|.|-|...|+.+++..-                 -.......||+||..+....+.
T Consensus       114 p~gqCvICLygfa~--~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~s  191 (368)
T KOG4445|consen  114 PNGQCVICLYGFAS--SPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENS  191 (368)
T ss_pred             CCCceEEEEEeecC--CCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccc
Confidence            35789999988863  22 2356899999999999876430                 0012345799999887655444


Q ss_pred             C
Q psy11857         91 V   91 (129)
Q Consensus        91 ~   91 (129)
                      +
T Consensus       192 l  192 (368)
T KOG4445|consen  192 L  192 (368)
T ss_pred             e
Confidence            4

>PHA02862 5L protein; Provisional

Probab=93.23  E-value=0.11  Score=34.42  Aligned_cols=48  Identities=19%  Similarity=0.398  Sum_probs=35.8

Q ss_pred             cccccccccccCCCCceEeecCCc-----hhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         31 LTCGTCLCMYDGGEHTPKLLPCSH-----TVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        31 l~C~iC~~~~~~~~~~p~~l~CgH-----~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      -.|-||++.-+    +. .-||.-     -..++|+.+|+..    .+...|+.|+..+...
T Consensus         3 diCWIC~~~~~----e~-~~PC~C~GS~K~VHq~CL~~WIn~----S~k~~CeLCkteY~Ik   55 (156)
T PHA02862          3 DICWICNDVCD----ER-NNFCGCNEEYKVVHIKCMQLWINY----SKKKECNLCKTKYNIK   55 (156)
T ss_pred             CEEEEecCcCC----CC-cccccccCcchhHHHHHHHHHHhc----CCCcCccCCCCeEEEE
Confidence            46999998762    22 356543     3578999999976    5688999999888753

>KOG1952|consensus

Probab=93.18  E-value=0.081  Score=44.01  Aligned_cols=55  Identities=24%  Similarity=0.515  Sum_probs=40.2

Q ss_pred             cCccccccccccccCCCCceEe--ecCCchhHHHhHHHHHHhccC-CCCccccccCCcce
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKL--LPCSHTVCLHCLSRIAASQTR-ETGTLRCPICREQI   84 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~--l~CgH~fC~~Cl~~~~~~~~~-~~~~~~CP~Cr~~~   84 (129)
                      ...+.|-||.+.++.  ..|+-  -.|-|.|...||..|...... ....+.||.|+...
T Consensus       189 ~~~yeCmIC~e~I~~--t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  189 NRKYECMICTERIKR--TAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             cCceEEEEeeeeccc--cCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            357899999998852  23332  158999999999999887322 24679999998443

>KOG3113|consensus

Probab=92.93  E-value=0.18  Score=36.43  Aligned_cols=54  Identities=20%  Similarity=0.267  Sum_probs=40.8

Q ss_pred             ccccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         25 DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        25 ~~~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +.....+.|||=.-.|++.-+--.+-+|||.|-.+-+.+....        .|+.|...+..
T Consensus       106 D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas--------~C~~C~a~y~~  159 (293)
T KOG3113|consen  106 DTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKAS--------VCHVCGAAYQE  159 (293)
T ss_pred             ccccceeecccccceecceEEEEEEeccceeccHHHHHHhhhc--------cccccCCcccc
Confidence            3345578999988888653344445589999999988877654        89999988774

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=92.52  E-value=0.0091  Score=34.59  Aligned_cols=41  Identities=22%  Similarity=0.408  Sum_probs=22.3

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ++.||.|...+.     +..   ||.+|..|-..+..       ...||.|...+.
T Consensus         1 e~~CP~C~~~L~-----~~~---~~~~C~~C~~~~~~-------~a~CPdC~~~Le   41 (70)
T PF07191_consen    1 ENTCPKCQQELE-----WQG---GHYHCEACQKDYKK-------EAFCPDCGQPLE   41 (70)
T ss_dssp             --B-SSS-SBEE-----EET---TEEEETTT--EEEE-------EEE-TTT-SB-E
T ss_pred             CCcCCCCCCccE-----EeC---CEEECcccccccee-------cccCCCcccHHH
Confidence            367999998883     333   88888888764322       457999987765

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=92.15  E-value=0.13  Score=33.59  Aligned_cols=37  Identities=16%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             ccccccccccccCCCCceEeecCC------chhHHHhHHHHHHh
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCS------HTVCLHCLSRIAAS   67 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~Cg------H~fC~~Cl~~~~~~   67 (129)
                      ...|.||++..+. ..--+.++||      |.||..|+.+|...
T Consensus        26 ~~EC~IC~~~I~~-~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~   68 (134)
T PF05883_consen   26 TVECQICFDRIDN-NDGVVYVTDGGTLNLEKMFCADCDKRWRRE   68 (134)
T ss_pred             Ceeehhhhhhhhc-CCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence            7899999999864 1223344565      67999999999654

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=91.77  E-value=0.16  Score=38.62  Aligned_cols=35  Identities=34%  Similarity=0.859  Sum_probs=25.8

Q ss_pred             CCchhHHHhHHHHHHhccCC-------CCccccccCCcceee
Q psy11857         52 CSHTVCLHCLSRIAASQTRE-------TGTLRCPICREQITI   86 (129)
Q Consensus        52 CgH~fC~~Cl~~~~~~~~~~-------~~~~~CP~Cr~~~~~   86 (129)
                      |....|..|+.+|+...+..       .+...||.||+.+..
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence            33455899999999875432       256789999998764

They are purported to be transmembrane protein-precursors but their function is unknown.

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=91.64  E-value=0.17  Score=26.44  Aligned_cols=40  Identities=18%  Similarity=0.541  Sum_probs=20.9

Q ss_pred             cccccccccCCCCceEee---cCCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857         33 CGTCLCMYDGGEHTPKLL---PCSHTVCLHCLSRIAASQTRETGTLRCPIC   80 (129)
Q Consensus        33 C~iC~~~~~~~~~~p~~l---~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C   80 (129)
                      |.+|.++..    .-..=   .|+-.+...|+..++...    ....||.|
T Consensus         1 C~~C~~iv~----~G~~C~~~~C~~r~H~~C~~~y~r~~----~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVT----QGQRCSNRDCNVRLHDDCFKKYFRHR----SNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-S----SSEE-SS--S--EE-HHHHHHHTTT-----SS-B-TTT
T ss_pred             CcccchhHe----eeccCCCCccCchHHHHHHHHHHhcC----CCCCCcCC
Confidence            567777773    22222   488889999999998873    23379987

; PDB: 3NW0_A 2CT0_A.

>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length

Probab=91.41  E-value=0.29  Score=27.06  Aligned_cols=48  Identities=17%  Similarity=0.385  Sum_probs=35.0

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ...|..|...+.....++.+-+=-.|||..|....+..        .||-|+..+.
T Consensus         5 rpnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~--------~CPNCgGelv   52 (57)
T PF06906_consen    5 RPNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG--------VCPNCGGELV   52 (57)
T ss_pred             CCCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC--------cCcCCCCccc
Confidence            35688888877543345555555569999999987765        8999987765

This family contains a number of conserved cysteine residues and its function is unknown.

>KOG3039|consensus

Probab=90.95  E-value=0.16  Score=36.55  Aligned_cols=34  Identities=15%  Similarity=0.156  Sum_probs=30.2

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHh
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAAS   67 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~   67 (129)
                      .--|++|++.+    ++|++.+=||.||+.||.+++-.
T Consensus        43 FdcCsLtLqPc----~dPvit~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   43 FDCCSLTLQPC----RDPVITPDGYLFDREAILEYILA   76 (303)
T ss_pred             cceeeeecccc----cCCccCCCCeeeeHHHHHHHHHH
Confidence            45689999999    99999999999999999887644

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=90.51  E-value=0.1  Score=24.31  Aligned_cols=9  Identities=33%  Similarity=0.623  Sum_probs=5.5

Q ss_pred             ccccccccc
Q psy11857         32 TCGTCLCMY   40 (129)
Q Consensus        32 ~C~iC~~~~   40 (129)
                      .||.|....
T Consensus         2 ~CP~C~~~V   10 (26)
T PF10571_consen    2 TCPECGAEV   10 (26)
T ss_pred             cCCCCcCCc
Confidence            366666655

Several members are annotated as putative helicases.

>KOG1100|consensus

Probab=90.38  E-value=0.13  Score=36.15  Aligned_cols=39  Identities=41%  Similarity=0.755  Sum_probs=29.3

Q ss_pred             cccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         33 CGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        33 C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      |-.|.+.-    ..-.++||.|. +|..|-.          ....||+|+....
T Consensus       161 Cr~C~~~~----~~VlllPCrHl~lC~~C~~----------~~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGERE----ATVLLLPCRHLCLCGICDE----------SLRICPICRSPKT  200 (207)
T ss_pred             ceecCcCC----ceEEeecccceEecccccc----------cCccCCCCcChhh
Confidence            89998876    56668899995 8998843          1457999986543

>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.21  E-value=0.37  Score=28.06  Aligned_cols=47  Identities=17%  Similarity=0.422  Sum_probs=35.9

Q ss_pred             cccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        31 l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ..|.-|...+-.+..+..+-.-.+|||..|....+..        .||-|+..+.
T Consensus         6 PnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~g--------~CPnCGGelv   52 (84)
T COG3813           6 PNCECCDRDLPPDSTDARICTFECTFCADCAENRLHG--------LCPNCGGELV   52 (84)
T ss_pred             CCCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhcC--------cCCCCCchhh
Confidence            4577777777555556666677789999999877665        8999988765

>KOG0298|consensus

Probab=89.93  E-value=0.13  Score=44.63  Aligned_cols=45  Identities=27%  Similarity=0.688  Sum_probs=37.1

Q ss_pred             CccccccccccccCCCC-ceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857         29 SFLTCGTCLCMYDGGEH-TPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ   83 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~-~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~   83 (129)
                      ....|+||.+.+    + .-.+.-|||.+|..|...|...      ...||.|...
T Consensus      1152 ~~~~c~ic~dil----~~~~~I~~cgh~~c~~c~~~~l~~------~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDIL----RNQGGIAGCGHEPCCRCDELWLYA------SSRCPICKSI 1197 (1394)
T ss_pred             cccchHHHHHHH----HhcCCeeeechhHhhhHHHHHHHH------hccCcchhhh
Confidence            367899999999    5 4456679999999999999987      5589999743

>KOG3579|consensus

Probab=89.66  E-value=0.15  Score=37.40  Aligned_cols=47  Identities=26%  Similarity=0.588  Sum_probs=35.3

Q ss_pred             CccccccccccccCCCCceEeecC----CchhHHHhHHHHHHhccCCCCccccccC
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPC----SHTVCLHCLSRIAASQTRETGTLRCPIC   80 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~C----gH~fC~~Cl~~~~~~~~~~~~~~~CP~C   80 (129)
                      ..|.|.+|.+.+    .+-....|    .|-||.-|-.+.++.+.. .....||.=
T Consensus       267 apLcCTLC~ERL----EDTHFVQCPSVp~HKFCFPCSResIK~Qg~-sgevYCPSG  317 (352)
T KOG3579|consen  267 APLCCTLCHERL----EDTHFVQCPSVPSHKFCFPCSRESIKQQGA-SGEVYCPSG  317 (352)
T ss_pred             Cceeehhhhhhh----ccCceeecCCCcccceecccCHHHHHhhcC-CCceeCCCC
Confidence            468999999999    45555544    799999999998888654 346677753

>KOG3899|consensus

Probab=89.52  E-value=0.28  Score=36.25  Aligned_cols=35  Identities=31%  Similarity=0.821  Sum_probs=26.1

Q ss_pred             CCchhHHHhHHHHHHhccCC-------CCccccccCCcceee
Q psy11857         52 CSHTVCLHCLSRIAASQTRE-------TGTLRCPICREQITI   86 (129)
Q Consensus        52 CgH~fC~~Cl~~~~~~~~~~-------~~~~~CP~Cr~~~~~   86 (129)
                      |....|.+|+.+|+...+.+       .+...||.||+.+..
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci  366 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI  366 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence            45567899999998764431       356799999998774

>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

Probab=89.39  E-value=0.1  Score=28.56  Aligned_cols=36  Identities=17%  Similarity=0.321  Sum_probs=25.9

Q ss_pred             cccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857         31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA   66 (129)
Q Consensus        31 l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~   66 (129)
                      -.|.+|...|+...+...--.||+.||..|......
T Consensus         3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~   38 (57)
T cd00065           3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP   38 (57)
T ss_pred             CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence            468999988864334444457999999999876543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.84  E-value=0.13  Score=27.43  Aligned_cols=31  Identities=42%  Similarity=1.065  Sum_probs=20.9

Q ss_pred             eecCC-chhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         49 LLPCS-HTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        49 ~l~Cg-H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+.|. |-.|..|+...+..      .-.||+|.+.+.
T Consensus        15 Li~C~dHYLCl~CLt~ml~~------s~~C~iC~~~LP   46 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSR------SDRCPICGKPLP   46 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SS------SSEETTTTEE--
T ss_pred             eeeecchhHHHHHHHHHhcc------ccCCCcccCcCc
Confidence            45554 66899999988876      558999988754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=88.69  E-value=0.21  Score=27.25  Aligned_cols=39  Identities=23%  Similarity=0.575  Sum_probs=23.4

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ   83 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~   83 (129)
                      .+.||.|.+.|+    .       ..+..-+.......    .....||+|...
T Consensus         2 ~f~CP~C~~~~~----~-------~~L~~H~~~~H~~~----~~~v~CPiC~~~   40 (54)
T PF05605_consen    2 SFTCPYCGKGFS----E-------SSLVEHCEDEHRSE----SKNVVCPICSSR   40 (54)
T ss_pred             CcCCCCCCCccC----H-------HHHHHHHHhHCcCC----CCCccCCCchhh
Confidence            688999999663    1       11333343333322    457899999753

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG2034|consensus

Probab=87.56  E-value=0.42  Score=40.13  Aligned_cols=37  Identities=30%  Similarity=0.487  Sum_probs=29.0

Q ss_pred             cCccccccccccccCCCCceE-eecCCchhHHHhHHHHHHh
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPK-LLPCSHTVCLHCLSRIAAS   67 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~-~l~CgH~fC~~Cl~~~~~~   67 (129)
                      +..-.|.+|...+-   ..|. +.+|||.|...|+.+....
T Consensus       815 ep~d~C~~C~~~ll---~~pF~vf~CgH~FH~~Cl~~~v~~  852 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLL---IKPFYVFPCGHCFHRDCLIRHVLS  852 (911)
T ss_pred             cCccchHHhcchhh---cCcceeeeccchHHHHHHHHHHHc
Confidence            44678999999875   4565 6689999999999886543

>KOG3268|consensus

Probab=87.09  E-value=0.98  Score=31.09  Aligned_cols=58  Identities=21%  Similarity=0.459  Sum_probs=36.6

Q ss_pred             cccccccccccc-C--CCCceEeecCCchhHHHhHHHHHHhccCCCC-----ccccccCCcceeeC
Q psy11857         30 FLTCGTCLCMYD-G--GEHTPKLLPCSHTVCLHCLSRIAASQTRETG-----TLRCPICREQITIP   87 (129)
Q Consensus        30 ~l~C~iC~~~~~-~--~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~-----~~~CP~Cr~~~~~~   87 (129)
                      ...|.||..+-- +  ++..--...||..|..-|+..|++.--....     -..||.|..++.++
T Consensus       165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            346777776432 2  1122224479999999999999876211011     13799999888754

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=85.50  E-value=1.6  Score=25.85  Aligned_cols=51  Identities=20%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             cccccccccccc-CCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYD-GGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~-~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .-.|.||.+..- ..+-++.+.  .|+--.|+.|..--.+.     ....||.|+..+.
T Consensus         9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke-----g~q~CpqCkt~yk   62 (80)
T PF14569_consen    9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE-----GNQVCPQCKTRYK   62 (80)
T ss_dssp             S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT-----S-SB-TTT--B--
T ss_pred             CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc-----CcccccccCCCcc
Confidence            457999999764 222344444  58889999998755554     5678999997665

>KOG3053|consensus

Probab=84.40  E-value=1.8  Score=31.44  Aligned_cols=74  Identities=23%  Similarity=0.439  Sum_probs=45.4

Q ss_pred             CccccccccccccCCCCceEeecCC-----chhHHHhHHHHHHhccC--CCCccccccCCcceeeCCCCCCCCChhHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCS-----HTVCLHCLSRIAASQTR--ETGTLRCPICREQITIPRGGVAALPPSFLVN  101 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~Cg-----H~fC~~Cl~~~~~~~~~--~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~  101 (129)
                      .+-.|.||+..=.+.....-+-||.     |=....|+.+|+.+...  ......||.|+..+...      +|.--.+.
T Consensus        19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv------~P~l~~~~   92 (293)
T KOG3053|consen   19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV------FPQLGPFD   92 (293)
T ss_pred             cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee------ccccChHH
Confidence            3678999997653111122244764     23688999999988533  23568999999887642      44444444


Q ss_pred             HHHHHHH
Q psy11857        102 QLLDLMS  108 (129)
Q Consensus       102 ~l~~~~~  108 (129)
                      ..++.+.
T Consensus        93 ~~Le~~d   99 (293)
T KOG3053|consen   93 RVLERLD   99 (293)
T ss_pred             HHHHHhh
Confidence            4444443

>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1

Probab=83.77  E-value=0.69  Score=26.21  Aligned_cols=37  Identities=19%  Similarity=0.388  Sum_probs=26.5

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAA   66 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~   66 (129)
                      ...|..|...|+...+...--.||..||..|......
T Consensus        10 ~~~C~~C~~~F~~~~rk~hCr~CG~i~C~~C~~~~~~   46 (68)
T smart00064       10 VSNCMGCGKEFNLTKRRHHCRNCGRIFCSKCSSKKAP   46 (68)
T ss_pred             CCcCcccCccccCcccccccccCCCCcChHHcCCeee
Confidence            4679999998863333333457999999999876543

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the

>PF14353 CpXC: CpXC protein

Probab=82.86  E-value=1.3  Score=28.41  Aligned_cols=51  Identities=14%  Similarity=0.267  Sum_probs=26.3

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      +++||-|...|.    ..+-..-.-..=..=..+.+..   .-..+.||.|+..+.+.
T Consensus         1 ~itCP~C~~~~~----~~v~~~I~~~~~p~l~e~il~g---~l~~~~CP~Cg~~~~~~   51 (128)
T PF14353_consen    1 EITCPHCGHEFE----FEVWTSINADEDPELKEKILDG---SLFSFTCPSCGHKFRLE   51 (128)
T ss_pred             CcCCCCCCCeeE----EEEEeEEcCcCCHHHHHHHHcC---CcCEEECCCCCCceecC
Confidence            368999998884    2221111100011222233322   13578999999887653

>KOG2068|consensus

Probab=82.58  E-value=0.77  Score=34.41  Aligned_cols=50  Identities=28%  Similarity=0.568  Sum_probs=38.7

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .-.||+|.+..+.++...+-.+||+..|..|+......      ...||.||+...
T Consensus       249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~------~~~~~~~rk~~~  298 (327)
T KOG2068|consen  249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG------DGRCPGCRKPYE  298 (327)
T ss_pred             CCCCCCCCCcccccccccccccccccchhhhhhccccc------CCCCCccCCccc
Confidence            46899999988665555555579999999998876654      668999997655

>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length

Probab=82.51  E-value=0.97  Score=25.82  Aligned_cols=13  Identities=31%  Similarity=0.654  Sum_probs=9.7

Q ss_pred             hhHHHhHHHHHHh
Q psy11857         55 TVCLHCLSRIAAS   67 (129)
Q Consensus        55 ~fC~~Cl~~~~~~   67 (129)
                      .||+.|+.+|+..
T Consensus        11 gFCRNCLskWy~~   23 (68)
T PF06844_consen   11 GFCRNCLSKWYRE   23 (68)
T ss_dssp             S--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4999999999877

The function of this family is unknown.; PDB: 2O35_A 3FYB_B.

>KOG2169|consensus

Probab=81.30  E-value=1.6  Score=35.91  Aligned_cols=71  Identities=18%  Similarity=0.321  Sum_probs=45.2

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS  108 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~  108 (129)
                      -.|.|+|....+.   ...+-..|.|.=|..=+  |+.+.......+.||+|.+...+     +.+..+..+.+++....
T Consensus       305 vSL~CPl~~~Rm~---~P~r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~~-----e~l~iD~~~~~iL~~~~  374 (636)
T KOG2169|consen  305 VSLNCPLSKMRMS---LPARGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAPF-----EGLIIDGYFLNILQSCQ  374 (636)
T ss_pred             eEecCCcccceee---cCCcccccccceecchh--hhHHhccCCCeeeCccCCccccc-----cchhhhHHHHHHHhhcc
Confidence            3799999987772   23335567775444432  22222223578999999988775     46777777777777655


Q ss_pred             h
Q psy11857        109 R  109 (129)
Q Consensus       109 ~  109 (129)
                      .
T Consensus       375 ~  375 (636)
T KOG2169|consen  375 A  375 (636)
T ss_pred             C
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-21
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	7e-13
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-08
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-06
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	2e-06
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	4e-06
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	5e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-05
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	5e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	7e-05
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	2e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	2e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	4e-04
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	6e-04
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	8e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	9e-04

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 80.1 bits (198), Expect = 3e-21
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 25  DFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
           D     L C  C+  +   +  PKLL C HT+C  CL ++ AS       +RCP C +  
Sbjct: 10  DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN---GVRCPFCSKIT 66

Query: 85  TIPRGGVAALPPSFLVNQLLD 105
            I    +  L  +  V +   
Sbjct: 67  RIT--SLTQLTDNLTVLKSGP 85

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 58.1 bits (141), Expect = 7e-13
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
          FL C  C          PKLLPC HT+C  CL         E   ++CPIC+    +   
Sbjct: 6  FLRCQQCQAEAK----CPKLLPCLHTLCSGCL---------EASGMQCPICQAPWPLGAD 52

Query: 90 GVA 92
            A
Sbjct: 53 TPA 55

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 23  YEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82
           Y +   +F  C  C           K+ PC H +C  CL+    S+ +      CP CR 
Sbjct: 325 YCEMGSTFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQG-----CPFCRC 375

Query: 83  QIT 85
           +I 
Sbjct: 376 EIK 378

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 31  LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
             CG C+ +       P  LPC+HT+C  C        T E  +L CP CR +  +    
Sbjct: 16  CQCGICMEIL----VEPVTLPCNHTLCKPCFQS-----TVEKASLCCPFCRRR--VSSWT 64

Query: 91  VAALPPSFLVNQLL 104
                 + LVN  L
Sbjct: 65  RYHTRRNSLVNVEL 78

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 20/80 (25%), Positives = 25/80 (31%), Gaps = 17/80 (21%)

Query: 28  ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
           E    C  C  +       P    C H VC  CL R   +Q        CP CR  +   
Sbjct: 50  EETFQCICCQELV----FRPITTVCQHNVCKDCLDRSFRAQ-----VFSCPACRYDLGR- 99

Query: 88  RGGVAALPPSFLVNQLLDLM 107
                    +  VNQ L  +
Sbjct: 100 -------SYAMQVNQPLQTV 112

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82
          +TC  CL +       P    C+H+ C  C++    S     G   CP+CR 
Sbjct: 20 VTCPICLELLK----EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 42.3 bits (99), Expect = 4e-06
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 28  ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
           E+ L C  C   +         L C+H+ C +C++     +        CPICR+ I   
Sbjct: 62  ENELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKRKI------ECPICRKDIKSK 111

Query: 88  RGGVAALPPSFLVNQLLDLMSRQRRHIIPKCSTHNSQIKKL 128
                +L     +N++++ +S + +           + K+L
Sbjct: 112 T---YSLVLDNCINKMVNNLSSEVKERRIVLIRE-RKAKRL 148

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 40.7 bits (96), Expect = 5e-06
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
          +TC  CL +       P  L C H+ C  CL+        + G   CP+CR      
Sbjct: 20 VTCPICLELL----TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 24 EDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQ 83
           D  E  + C  C+   +  +       C + +C  C  RI     R      CP CR+ 
Sbjct: 5  PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKP 59

Query: 84 IT 85
            
Sbjct: 60 YP 61

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 39.1 bits (90), Expect = 5e-05
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 17 ETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLR 76
          E   I  E    +            G     +L  CSH   L CL  +  +  ++ G+L+
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD-GSLQ 84

Query: 77 CPICREQITIPRG 89
          CP C+       G
Sbjct: 85 CPSCKTIYGEKTG 97

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 9/61 (14%)

Query: 28  ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
           E    C  C  +     + P    C H VC  CL R   +Q        CP CR  +   
Sbjct: 76  EQSFMCVCCQELV----YQPVTTECFHNVCKDCLQRSFKAQVFS-----CPACRHDLGQN 126

Query: 88  R 88
            
Sbjct: 127 Y 127

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI-AASQTRETGTLRCPICREQITIP 87
          +TC  CL +       P  L C H++C  C++     + T   G   CP+C    +  
Sbjct: 13 VTCPICLELLT----EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 16/89 (17%)

Query: 28  ESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
           +  L CG C   +    +   ++P CSH  C  C+ +  + +T      +CP C   +T 
Sbjct: 20  DDLLRCGICFEYF----NIAMIIPQCSHNYCSLCIRKFLSYKT------QCPTCCVTVTE 69

Query: 87  PRGGVAALPPSFLVNQLLDLMSRQRRHII 115
           P      L  + ++++L+  ++  R H++
Sbjct: 70  PD-----LKNNRILDELVKSLNFARNHLL 93

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
          + C  CL +       P  + C H  CL C+++I  +     G  +CP+C+  + 
Sbjct: 21 VICPICLDILQ----KPVTIDCGHNFCLKCITQIGETS---CGFFKCPLCKTSVR 68

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 10/58 (17%)

Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
           +   C  CL         P  LPC H  C  C+   +          RC +CR++I 
Sbjct: 13 LTVPECAICLQTC----VHPVSLPCKHVFCYLCVKGASWLGK------RCALCRQEIP 60

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 35.3 bits (81), Expect = 6e-04
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGG 90
           C  C       +       C+H+    C+S             RCP+C++   + R G
Sbjct: 28 ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN------RCPLCQQDWVVQRIG 80

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 9/70 (12%)

Query: 27  NESFLTCGTCLCMYDGGEHTPKL----LPCSHTVCLHCL-----SRIAASQTRETGTLRC 77
           +   L C  C      G   P +      C       CL     + +      E    +C
Sbjct: 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQC 364

Query: 78  PICREQITIP 87
           P C+ +++  
Sbjct: 365 PFCKAKLSTS 374

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 35.6 bits (82), Expect = 9e-04
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 13/90 (14%)

Query: 20  SINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPI 79
            + ++   ES   C  CL             PC H  C  C+ +            +CP+
Sbjct: 8   DVEFDPPLESKYECPICLMAL----REAVQTPCGHRFCKACIIKS-----IRDAGHKCPV 58

Query: 80  CREQITIPRGGVAALPPSFLVNQLLDLMSR 109
             E +   +      P +F   ++L LM +
Sbjct: 59  DNEILLENQ----LFPDNFAKREILSLMVK 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.76
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.72
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.69
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.68
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.68
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.66
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.66
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.65
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.65
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.65
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.64
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.62
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.61
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.61
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.61
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.6
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.6
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.59
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.58
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.56
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.55
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.54
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.54
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.54
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.53
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.53
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.52
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.52
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.51
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.51
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.48
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.46
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.45
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.45
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.44
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.44
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.44
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.42
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.42
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.41
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.4
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.39
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.38
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.37
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.37
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.36
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.33
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.31
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.29
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.29
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.24
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.22
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.21
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	99.2
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.17
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.15
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.15
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.13
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.11
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.02
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.02
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.01
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.9
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.86
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.86
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.72
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.5
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.49
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.21
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.03
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.54
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	96.75
3nw0_A	238	Non-structural maintenance of chromosomes element	96.65
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	94.15
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	93.6
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	93.27
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	92.96
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	87.5
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	84.93
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	84.86
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	84.43
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	84.25
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	83.61
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	81.98
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	81.81

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=106.46  Aligned_cols=73  Identities=19%  Similarity=0.456  Sum_probs=62.6

Q ss_pred             ccCccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHH
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLD  105 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~  105 (129)
                      ..+.+.|+||++.|    .+|++++ |||+||..||..|+..    .....||.||..+...    ..+.+|+.+.++++
T Consensus        10 ~~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~~~~----~~~~~n~~l~~~i~   77 (92)
T 3ztg_A           10 IPDELLCLICKDIM----TDAVVIPCCGNSYCDECIRTALLE----SDEHTCPTCHQNDVSP----DALIANKFLRQAVN   77 (92)
T ss_dssp             CCTTTEETTTTEEC----SSCEECTTTCCEECHHHHHHHHHH----CTTCCCTTTCCSSCCT----TSCEECHHHHHHHH
T ss_pred             CCcCCCCCCCChhh----cCceECCCCCCHHHHHHHHHHHHh----cCCCcCcCCCCcCCCc----cccCcCHHHHHHHH
Confidence            34589999999999    7999999 9999999999999986    3457999999986433    46889999999999


Q ss_pred             HHHhhc
Q psy11857        106 LMSRQR  111 (129)
Q Consensus       106 ~~~~~~  111 (129)
                      .+.+.+
T Consensus        78 ~~~~~~   83 (92)
T 3ztg_A           78 NFKNET   83 (92)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.72  E-value=3e-18  Score=101.50  Aligned_cols=70  Identities=19%  Similarity=0.444  Sum_probs=60.6

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM  107 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~  107 (129)
                      .+.+.|+||++.|    .+|++++|||+||..||.+|+..     +...||.||..+..     ..+.+|..+.++++.+
T Consensus         6 ~~~~~C~IC~~~~----~~Pv~~~CgH~fc~~Ci~~~~~~-----~~~~CP~C~~~~~~-----~~l~~n~~l~~~i~~~   71 (78)
T 1t1h_A            6 PEYFRCPISLELM----KDPVIVSTGQTYERSSIQKWLDA-----GHKTCPKSQETLLH-----AGLTPNYVLKSLIALW   71 (78)
T ss_dssp             SSSSSCTTTSCCC----SSEEEETTTEEEEHHHHHHHHTT-----TCCBCTTTCCBCSS-----CCCEECTTTHHHHHHH
T ss_pred             cccCCCCCccccc----cCCEEcCCCCeecHHHHHHHHHH-----CcCCCCCCcCCCCh-----hhCccCHHHHHHHHHH
Confidence            3489999999999    79999999999999999999975     35689999998764     3688899999999998


Q ss_pred             Hhhc
Q psy11857        108 SRQR  111 (129)
Q Consensus       108 ~~~~  111 (129)
                      .+.+
T Consensus        72 ~~~~   75 (78)
T 1t1h_A           72 CESN   75 (78)
T ss_dssp             HHHS
T ss_pred             HHHc
Confidence            7653

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.69  E-value=1.6e-17  Score=102.60  Aligned_cols=71  Identities=25%  Similarity=0.703  Sum_probs=61.3

Q ss_pred             cCccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      .+.+.|+||++.|    .+|+++ +|||+||..|+.+|+..      ...||.||..+...     .+.+|+.+.++++.
T Consensus        20 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~-----~l~~n~~l~~~i~~   84 (99)
T 2y43_A           20 DDLLRCGICFEYF----NIAMIIPQCSHNYCSLCIRKFLSY------KTQCPTCCVTVTEP-----DLKNNRILDELVKS   84 (99)
T ss_dssp             HHHTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHHTT------CCBCTTTCCBCCGG-----GCEECHHHHHHHHH
T ss_pred             CCCCCcccCChhh----CCcCEECCCCCHhhHHHHHHHHHC------CCCCCCCCCcCChh-----hCCcCHHHHHHHHH
Confidence            3478999999999    789988 89999999999999985      35899999988753     58899999999999


Q ss_pred             HHhhccC
Q psy11857        107 MSRQRRH  113 (129)
Q Consensus       107 ~~~~~~~  113 (129)
                      +++.+++
T Consensus        85 ~~~~~~~   91 (99)
T 2y43_A           85 LNFARNH   91 (99)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9887543

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.68  E-value=2.9e-17  Score=105.40  Aligned_cols=68  Identities=25%  Similarity=0.526  Sum_probs=58.7

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM  107 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~  107 (129)
                      .+.+.|+||++.|    .+|++++|||+||..||..|+..     ....||.||..+...    ..+.+|..+.++++.+
T Consensus        50 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~----~~~~~n~~l~~~i~~~  116 (124)
T 3fl2_A           50 EETFQCICCQELV----FRPITTVCQHNVCKDCLDRSFRA-----QVFSCPACRYDLGRS----YAMQVNQPLQTVLNQL  116 (124)
T ss_dssp             HHHTBCTTTSSBC----SSEEECTTSCEEEHHHHHHHHHT-----TCCBCTTTCCBCCTT----CCCCCCHHHHHHHHHH
T ss_pred             ccCCCCCcCChHH----cCcEEeeCCCcccHHHHHHHHhH-----CcCCCCCCCccCCCC----CCCCCCHHHHHHHHHH
Confidence            3478999999999    79999999999999999999984     456899999988742    3688999999999876


Q ss_pred             H
Q psy11857        108 S  108 (129)
Q Consensus       108 ~  108 (129)
                      -
T Consensus       117 ~  117 (124)
T 3fl2_A          117 F  117 (124)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.68  E-value=3.9e-17  Score=98.45  Aligned_cols=68  Identities=15%  Similarity=0.138  Sum_probs=60.5

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS  108 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~  108 (129)
                      +++.||||+++|    .+|++++|||+||..||.+|+..      ...||.|+..+..     ..+.+|..+.++++.+.
T Consensus        13 ~~~~CpI~~~~m----~dPV~~~cGhtf~r~~I~~~l~~------~~~cP~~~~~l~~-----~~l~pn~~L~~~i~~~~   77 (85)
T 2kr4_A           13 DEFRDPLMDTLM----TDPVRLPSGTVMDRSIILRHLLN------SPTDPFNRQMLTE-----SMLEPVPELKEQIQAWM   77 (85)
T ss_dssp             TTTBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHH------CSBCTTTCCBCCG-----GGCEECHHHHHHHHHHH
T ss_pred             hheECcccCchh----cCCeECCCCCEECHHHHHHHHhc------CCCCCCCcCCCCh-----HhcchHHHHHHHHHHHH
Confidence            489999999999    89999999999999999999986      3589999998874     36889999999999987


Q ss_pred             hhc
Q psy11857        109 RQR  111 (129)
Q Consensus       109 ~~~  111 (129)
                      +.+
T Consensus        78 ~~~   80 (85)
T 2kr4_A           78 REK   80 (85)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.66  E-value=6.4e-17  Score=100.25  Aligned_cols=68  Identities=15%  Similarity=0.140  Sum_probs=60.7

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS  108 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~  108 (129)
                      +.+.||||+++|    .+|++++|||+||..||.+|+..      ...||.|+..+..     ..+.+|..+.++++.+.
T Consensus        28 ~~~~CpI~~~~m----~dPV~~~cGhtf~r~~I~~~l~~------~~~cP~~~~~l~~-----~~L~pn~~Lk~~I~~~~   92 (100)
T 2kre_A           28 DEFRDPLMDTLM----TDPVRLPSGTIMDRSIILRHLLN------SPTDPFNRQTLTE-----SMLEPVPELKEQIQAWM   92 (100)
T ss_dssp             TTTBCTTTCSBC----SSEEEETTTEEEEHHHHHHHTTS------CSBCSSSCCBCCT-----TSSEECHHHHHHHHHHH
T ss_pred             HhhCCcCccCcc----cCCeECCCCCEEchHHHHHHHHc------CCCCCCCCCCCCh-----hhceECHHHHHHHHHHH
Confidence            489999999999    89999999999999999999975      3589999998774     46899999999999998


Q ss_pred             hhc
Q psy11857        109 RQR  111 (129)
Q Consensus       109 ~~~  111 (129)
                      ..+
T Consensus        93 ~~~   95 (100)
T 2kre_A           93 REK   95 (100)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            754

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.65  E-value=1.2e-16  Score=98.69  Aligned_cols=68  Identities=19%  Similarity=0.202  Sum_probs=60.7

Q ss_pred             CccccccccccccCCCCceEeecCC-chhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCS-HTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM  107 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~Cg-H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~  107 (129)
                      +++.||||+++|    ++|++++|| |+||+.||.+|+..      ...||+|+..+..     ..+.+|..+.++++.+
T Consensus        21 ~~~~CpI~~~~m----~dPV~~~cG~htf~r~cI~~~l~~------~~~cP~~~~~l~~-----~~L~pn~~Lk~~I~~~   85 (98)
T 1wgm_A           21 DEFLDPIMSTLM----CDPVVLPSSRVTVDRSTIARHLLS------DQTDPFNRSPLTM-----DQIRPNTELKEKIQRW   85 (98)
T ss_dssp             TTTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHTTT------SCBCTTTCSBCCT-----TTSEECHHHHHHHHHH
T ss_pred             HhcCCcCccccc----cCCeECCCCCeEECHHHHHHHHHh------CCCCCCCCCCCCh-----hhceEcHHHHHHHHHH
Confidence            489999999999    899999999 99999999999985      3589999998874     4688999999999999


Q ss_pred             Hhhc
Q psy11857        108 SRQR  111 (129)
Q Consensus       108 ~~~~  111 (129)
                      .+.+
T Consensus        86 ~~~~   89 (98)
T 1wgm_A           86 LAER   89 (98)
T ss_dssp             HHHS
T ss_pred             HHHc
Confidence            8764

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.65  E-value=4.2e-17  Score=101.07  Aligned_cols=71  Identities=20%  Similarity=0.500  Sum_probs=60.3

Q ss_pred             cCccccccccccccCCCCceEe-ecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~-l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      .+.+.|+||++.|    .+|+. ++|||+||..||.+|+...     ...||.||..+..     ..+..|..+.++++.
T Consensus        20 ~~~~~C~IC~~~~----~~p~~~~~CgH~FC~~Ci~~~~~~~-----~~~CP~Cr~~~~~-----~~l~~~~~~~~i~~~   85 (100)
T 3lrq_A           20 AEVFRCFICMEKL----RDARLCPHCSKLCCFSCIRRWLTEQ-----RAQCPHCRAPLQL-----RELVNCRWAEEVTQQ   85 (100)
T ss_dssp             HHHTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHHHHT-----CSBCTTTCCBCCG-----GGCEECTTHHHHHHH
T ss_pred             CCCCCCccCCccc----cCccccCCCCChhhHHHHHHHHHHC-----cCCCCCCCCcCCH-----HHhHhhHHHHHHHHH
Confidence            3489999999999    79999 8999999999999999972     2689999999864     357788888888888


Q ss_pred             HHhhcc
Q psy11857        107 MSRQRR  112 (129)
Q Consensus       107 ~~~~~~  112 (129)
                      +++.+.
T Consensus        86 ~~~l~~   91 (100)
T 3lrq_A           86 LDTLQL   91 (100)
T ss_dssp             HHHHCC
T ss_pred             HHHHHH
Confidence            887653

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.5e-16  Score=97.55  Aligned_cols=74  Identities=20%  Similarity=0.320  Sum_probs=61.2

Q ss_pred             CccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCcccccc--CCcc-eeeCCCCCCCCChhHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPI--CREQ-ITIPRGGVAALPPSFLVNQLL  104 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~--Cr~~-~~~~~~~~~~~~~n~~l~~l~  104 (129)
                      +.+.||||+++|    .+|++++ |||+||..||.+|+......+....||.  |+.. +..     ..+.+|..+.+++
T Consensus         6 ~~~~CPI~~~~~----~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~-----~~L~pn~~L~~~I   76 (94)
T 2yu4_A            6 SGFTCPITKEEM----KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK-----SDLIQDEALRRAI   76 (94)
T ss_dssp             SCCBCTTTCSBC----SSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG-----GGEEECHHHHHHH
T ss_pred             cEeECcCcCchh----cCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH-----hhCcCCHHHHHHH
Confidence            479999999999    8999996 9999999999999987421124678999  8866 543     3688999999999


Q ss_pred             HHHHhhc
Q psy11857        105 DLMSRQR  111 (129)
Q Consensus       105 ~~~~~~~  111 (129)
                      +.+.+..
T Consensus        77 ~~~~~~~   83 (94)
T 2yu4_A           77 ENHNKKR   83 (94)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHh
Confidence            9998764

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.64  E-value=1.5e-16  Score=105.30  Aligned_cols=68  Identities=28%  Similarity=0.580  Sum_probs=59.4

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS  108 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~  108 (129)
                      +.+.|+||++.|    .+|++++|||+||..||..|+..     ....||.||..+...    ..+.+|..+.++++.+.
T Consensus        77 ~~~~C~IC~~~~----~~pv~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~----~~l~~n~~l~~lv~~~~  143 (150)
T 1z6u_A           77 QSFMCVCCQELV----YQPVTTECFHNVCKDCLQRSFKA-----QVFSCPACRHDLGQN----YIMIPNEILQTLLDLFF  143 (150)
T ss_dssp             HHTBCTTTSSBC----SSEEECTTSCEEEHHHHHHHHHT-----TCCBCTTTCCBCCTT----CCCCBCHHHHHHHHHHS
T ss_pred             cCCEeecCChhh----cCCEEcCCCCchhHHHHHHHHHh-----CCCcCCCCCccCCCC----CCCCCCHHHHHHHHHHh
Confidence            478999999999    79999999999999999999985     356899999988743    26889999999999876


Q ss_pred             h
Q psy11857        109 R  109 (129)
Q Consensus       109 ~  109 (129)
                      .
T Consensus       144 p  144 (150)
T 1z6u_A          144 P  144 (150)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.1e-16  Score=96.61  Aligned_cols=69  Identities=32%  Similarity=0.722  Sum_probs=54.2

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVN  101 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~  101 (129)
                      .+.+.|+||++.|...+..|++++|||+||..|+.+|+...   .....||.||+.+..  ..+..++.|+.+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~--~~i~~l~~n~~~~   81 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---INGVRCPFCSKITRI--TSLTQLTDNLTVL   81 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---SSCBCCTTTCCCBCC--SSTTTSEECTTTT
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---CCCcCCCCCCCcccc--hhHHHHHHHHHHH
Confidence            45789999999995433349999999999999999999873   235799999998764  3556777776543

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.61  E-value=1.1e-16  Score=104.50  Aligned_cols=49  Identities=31%  Similarity=0.722  Sum_probs=43.4

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +++++.|+||++.|    .+|++++|||+||..||..|+..      ...||.||+.+.
T Consensus        50 ~~~~~~C~iC~~~~----~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~   98 (138)
T 4ayc_A           50 LENELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKR------KIECPICRKDIK   98 (138)
T ss_dssp             HHHHSBCTTTCSBC----SSEEEETTSCEEEHHHHHHHTTT------CSBCTTTCCBCC
T ss_pred             ccccCCCcccCccc----CCceECCCCCCccHHHHHHHHHc------CCcCCCCCCcCC
Confidence            34578999999999    79999999999999999999875      458999999875

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=4.5e-17  Score=97.52  Aligned_cols=65  Identities=28%  Similarity=0.622  Sum_probs=51.4

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVN  101 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~  101 (129)
                      .+.+.|+||++.|    .+|++++|||+||..|+..|+......+....||.||..+...     .+.+|+.+.
T Consensus        17 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~-----~~~~n~~l~   81 (85)
T 2ecw_A           17 KEEVTCPICLELL----KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG-----NLKPNLHVA   81 (85)
T ss_dssp             CTTTSCTTTCSCC----SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT-----CCEECSCCC
T ss_pred             ccCCCCcCCChhh----CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH-----hCCcCHHHH
Confidence            4578999999999    7999999999999999999998743223478999999987642     455555443

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.61  E-value=1.5e-16  Score=106.69  Aligned_cols=79  Identities=27%  Similarity=0.555  Sum_probs=57.5

Q ss_pred             CccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM  107 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~  107 (129)
                      +.+.|+||++.|    .+|+.+ +|||+||..||..|+..     ....||.||..+...    ..+.+|..+.++++.+
T Consensus        53 ~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~----~~l~~~~~l~~~i~~~  119 (165)
T 2ckl_B           53 SELMCPICLDML----KNTMTTKECLHRFCADCIITALRS-----GNKECPTCRKKLVSK----RSLRPDPNFDALISKI  119 (165)
T ss_dssp             HHHBCTTTSSBC----SSEEEETTTCCEEEHHHHHHHHHT-----TCCBCTTTCCBCCSG----GGEEECHHHHHHHHHH
T ss_pred             CCCCCcccChHh----hCcCEeCCCCChhHHHHHHHHHHh-----CcCCCCCCCCcCCCc----ccCCcCHHHHHHHHHH
Confidence            467999999999    789988 89999999999999985     356899999987533    3578899999999888


Q ss_pred             HhhccCCCCCCCccccc
Q psy11857        108 SRQRRHIIPKCSTHNSQ  124 (129)
Q Consensus       108 ~~~~~~~~~~C~~H~~~  124 (129)
                      ....    ..|+.|+++
T Consensus       120 ~~~~----~~~~~~~e~  132 (165)
T 2ckl_B          120 YPSR----DEYEAHQER  132 (165)
T ss_dssp             C----------------
T ss_pred             Hcch----hHHHHHHHH
Confidence            6532    225666543

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.60  E-value=3.2e-16  Score=98.21  Aligned_cols=71  Identities=18%  Similarity=0.460  Sum_probs=58.3

Q ss_pred             cCccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      .+.+.|+||++.|    .+|+++ +|||+||..||..|+..      ...||.||..+... ..+..+..|..+.++++.
T Consensus        13 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~-~~~~~l~~n~~l~~~i~~   81 (108)
T 2ckl_A           13 NPHLMCVLCGGYF----IDATTIIECLHSFCKTCIVRYLET------SKYCPICDVQVHKT-RPLLNIRSDKTLQDIVYK   81 (108)
T ss_dssp             GGGTBCTTTSSBC----SSEEEETTTCCEEEHHHHHHHHTS------CSBCTTTCCBSCSS-CGGGGEEECHHHHHHHHH
T ss_pred             CCcCCCccCChHH----hCcCEeCCCCChhhHHHHHHHHHh------CCcCcCCCcccccc-CcccccCcCHHHHHHHHH
Confidence            3489999999999    799998 99999999999999886      36899999987632 222357789999999887


Q ss_pred             HHh
Q psy11857        107 MSR  109 (129)
Q Consensus       107 ~~~  109 (129)
                      +..
T Consensus        82 ~~~   84 (108)
T 2ckl_A           82 LVP   84 (108)
T ss_dssp             HST
T ss_pred             Hhh
Confidence            754

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=90.98  Aligned_cols=57  Identities=25%  Similarity=0.506  Sum_probs=47.9

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLV  100 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l  100 (129)
                      .+.+.|+||++.|    .+|++++|||+||..|+.+|+..      ...||.||..+.      ..+.+|..+
T Consensus        13 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~------~~~~~~~~l   69 (81)
T 2csy_A           13 EIPFRCFICRQAF----QNPVVTKCRHYFCESCALEHFRA------TPRCYICDQPTG------GIFNPAKEL   69 (81)
T ss_dssp             CCCSBCSSSCSBC----CSEEECTTSCEEEHHHHHHHHHH------CSBCSSSCCBCC------SCCEECHHH
T ss_pred             CCCCCCcCCCchh----cCeeEccCCCHhHHHHHHHHHHC------CCcCCCcCcccc------ccCCcHHHH
Confidence            3478999999999    79999999999999999999986      458999999886      246666443

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.59  E-value=7.5e-16  Score=90.36  Aligned_cols=52  Identities=21%  Similarity=0.575  Sum_probs=44.8

Q ss_pred             cCccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      .+.+.|+||++.|    .+|++++ |||+||..||.+|+...    ....||.||+.+..+
T Consensus        13 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~~----~~~~CP~Cr~~~~~~   65 (74)
T 2yur_A           13 PDELLCLICKDIM----TDAVVIPCCGNSYCDECIRTALLES----DEHTCPTCHQNDVSP   65 (74)
T ss_dssp             CGGGSCSSSCCCC----TTCEECSSSCCEECTTHHHHHHHHS----SSSCCSSSCCSSCCT
T ss_pred             CCCCCCcCCChHH----hCCeEcCCCCCHHHHHHHHHHHHhc----CCCcCCCCCCcCCCc
Confidence            3489999999999    7999999 99999999999999872    356899999975533

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=3.1e-17  Score=98.25  Aligned_cols=65  Identities=28%  Similarity=0.608  Sum_probs=50.7

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVN  101 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~  101 (129)
                      .+.+.|+||++.|    .+|+.++|||+||..|+..|+......+....||.||..+...     .+.+|+.+.
T Consensus        17 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~-----~~~~n~~l~   81 (85)
T 2ecv_A           17 KEEVTCPICLELL----TQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE-----NIRPNRHVA   81 (85)
T ss_dssp             CCCCCCTTTCSCC----SSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS-----SCCCSCCCC
T ss_pred             cCCCCCCCCCccc----CCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH-----hcCccHHHH
Confidence            4578999999999    7899999999999999999988632123467999999988743     455555443

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.56  E-value=1.7e-17  Score=98.27  Aligned_cols=65  Identities=23%  Similarity=0.554  Sum_probs=50.0

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccC-CCCccccccCCcceeeCCCCCCCCChhHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTR-ETGTLRCPICREQITIPRGGVAALPPSFLVN  101 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~  101 (129)
                      .+.+.|+||++.|    .+|++++|||+||..|+.+|+..... .+....||.||..+...     .+.+|+.+.
T Consensus        10 ~~~~~C~IC~~~~----~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~-----~l~~n~~l~   75 (79)
T 2egp_A           10 QEEVTCPICLELL----TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE-----HLQANQHLA   75 (79)
T ss_dssp             CCCCEETTTTEEC----SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS-----GGGTCSSSC
T ss_pred             ccCCCCcCCCccc----CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh-----hCCcCHHHH
Confidence            4589999999999    78999999999999999998875211 12367899999988742     455555443

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.55  E-value=5.5e-16  Score=97.47  Aligned_cols=51  Identities=29%  Similarity=0.813  Sum_probs=44.4

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +.+.|+||++.|    .+|++++|||+||..|+..|+...   .....||.||..+..
T Consensus        20 ~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           20 KILECPICLELI----KEPVSTKCDHIFCKFCMLKLLNQK---KGPSQCPLCKNDITK   70 (112)
T ss_dssp             HHTSCSSSCCCC----SSCCBCTTSCCCCSHHHHHHHHSS---SSSCCCTTTSCCCCT
T ss_pred             CCCCCcccChhh----cCeEECCCCCHHHHHHHHHHHHhC---CCCCCCcCCCCcCCH
Confidence            478999999999    799999999999999999999863   234789999998774

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.55  E-value=6.4e-16  Score=97.80  Aligned_cols=72  Identities=24%  Similarity=0.506  Sum_probs=55.9

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCC--CCCCCCChhHHHHHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPR--GGVAALPPSFLVNQLLD  105 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~--~~~~~~~~n~~l~~l~~  105 (129)
                      .+++.|+||++.|    .+|++++|||+||..||.+|+..     ....||.||..+....  .....+..|..+.++++
T Consensus        13 ~~~~~C~iC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~   83 (115)
T 3l11_A           13 LSECQCGICMEIL----VEPVTLPCNHTLCKPCFQSTVEK-----ASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQ   83 (115)
T ss_dssp             HHHHBCTTTCSBC----SSCEECTTSCEECHHHHCCCCCT-----TTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred             CCCCCCccCCccc----CceeEcCCCCHHhHHHHHHHHhH-----CcCCCCCCCcccCccccccccccchhhHHHHHHHH
Confidence            3479999999999    79999999999999999998864     3578999999876310  00135667788888877


Q ss_pred             HHH
Q psy11857        106 LMS  108 (129)
Q Consensus       106 ~~~  108 (129)
                      .+.
T Consensus        84 ~~~   86 (115)
T 3l11_A           84 KHY   86 (115)
T ss_dssp             HHS
T ss_pred             HHC
Confidence            653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.54  E-value=3e-15  Score=107.17  Aligned_cols=69  Identities=14%  Similarity=0.224  Sum_probs=59.8

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS  108 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~  108 (129)
                      +.+.||||+++|    .+|++++|||+||..||.+|+...     ...||.|+..+..     ..+.+|..+.++++.+.
T Consensus       207 ~~~~c~i~~~~~----~dPv~~~~gh~f~~~~i~~~~~~~-----~~~cP~~~~~~~~-----~~l~~n~~l~~~i~~~~  272 (281)
T 2c2l_A          207 DYLCGKISFELM----REPCITPSGITYDRKDIEEHLQRV-----GHFNPVTRSPLTQ-----EQLIPNLAMKEVIDAFI  272 (281)
T ss_dssp             STTBCTTTCSBC----SSEEECSSCCEEETTHHHHHHHHT-----CSSCTTTCCCCCG-----GGCEECHHHHHHHHHHH
T ss_pred             cccCCcCcCCHh----cCCeECCCCCEECHHHHHHHHHHC-----CCCCcCCCCCCch-----hcCcccHHHHHHHHHHH
Confidence            479999999999    899999999999999999999872     2349999998864     36889999999999987


Q ss_pred             hhc
Q psy11857        109 RQR  111 (129)
Q Consensus       109 ~~~  111 (129)
                      ..+
T Consensus       273 ~~~  275 (281)
T 2c2l_A          273 SEN  275 (281)
T ss_dssp             TTC
T ss_pred             HHC
Confidence            643

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=4.8e-15  Score=84.16  Aligned_cols=47  Identities=30%  Similarity=0.910  Sum_probs=40.7

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC   80 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C   80 (129)
                      ..+.+.|+||++.|    .+|++++|||+||..||.+|+...   +....||.|
T Consensus        17 ~~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDIL----QKPVTIDCGHNFCLKCITQIGETS---CGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBC----SSCEECTTSSEECHHHHHHHHHHC---SSCCCCSCC
T ss_pred             CccCCCCCcCCchh----CCeEEeCCCCcchHHHHHHHHHcC---CCCCcCcCC
Confidence            34589999999999    799999999999999999999862   246789987

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.7e-15  Score=87.49  Aligned_cols=53  Identities=26%  Similarity=0.830  Sum_probs=45.0

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      ..+.+.|+||++.|    .+|++++|||+||..|+..|+...   .....||.||+.+..
T Consensus        17 ~~~~~~C~IC~~~~----~~~~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           17 LQEEVICPICLDIL----QKPVTIDCGHNFCLKCITQIGETS---CGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCBCTTTCSBC----SSEEECTTCCEEEHHHHHHHCSSS---CSCCCCSSSCCCCCC
T ss_pred             CccCCEeccCCccc----CCeEEcCCCChhhHHHHHHHHHcC---CCCCCCCCCCCcCCc
Confidence            34578999999999    799999999999999999998732   246789999998764

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.53  E-value=6.9e-15  Score=99.55  Aligned_cols=69  Identities=16%  Similarity=0.268  Sum_probs=60.4

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS  108 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~  108 (129)
                      +.+.||||+++|    .+|++++|||+||..||..|+...    +. .||.|+..+..     ..+.+|..+.++++.+.
T Consensus       105 ~~f~CPI~~elm----~DPV~~~~Ghtfer~~I~~~l~~~----~~-tcP~t~~~l~~-----~~L~pN~~Lk~~Ie~~~  170 (179)
T 2f42_A          105 DYLCGKISFELM----REPCITPSGITYDRKDIEEHLQRV----GH-FDPVTRSPLTQ-----DQLIPNLAMKEVIDAFI  170 (179)
T ss_dssp             GGGBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHHT----CS-BCTTTCCBCCG-----GGCEECHHHHHHHHHHH
T ss_pred             HhhcccCccccC----CCCeECCCCCEECHHHHHHHHHhC----CC-CCCCCcCCCCh-----hhCcchHHHHHHHHHHH
Confidence            589999999999    899999999999999999999872    22 79999998764     36899999999999987


Q ss_pred             hhc
Q psy11857        109 RQR  111 (129)
Q Consensus       109 ~~~  111 (129)
                      ..+
T Consensus       171 ~~~  173 (179)
T 2f42_A          171 QEN  173 (179)
T ss_dssp             HHC
T ss_pred             HHC
Confidence            654

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.53  E-value=4e-15  Score=94.64  Aligned_cols=67  Identities=22%  Similarity=0.448  Sum_probs=54.1

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      ..+.+.|+||++.+    .+|++++|||+||..||..|+...     ...||.||..+...     .+.++..+.+++..
T Consensus        15 ~~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~-----~~~~~~~l~~~i~~   80 (118)
T 3hct_A           15 LESKYECPICLMAL----REAVQTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLEN-----QLFPDNFAKREILS   80 (118)
T ss_dssp             CCGGGBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCGG-----GCEECHHHHHHHHT
T ss_pred             CCCCCCCCcCChhh----cCeEECCcCChhhHHHHHHHHhhC-----CCCCCCCCCCcCHH-----hcccCHHHHHHHcc
Confidence            44589999999999    799999999999999999999873     34899999988742     45567767666654


Q ss_pred             H
Q psy11857        107 M  107 (129)
Q Consensus       107 ~  107 (129)
                      +
T Consensus        81 l   81 (118)
T 3hct_A           81 L   81 (118)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=3.9e-15  Score=85.33  Aligned_cols=49  Identities=29%  Similarity=0.741  Sum_probs=43.2

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+.+.|+||++.+    .+|+.++|||+||..|+.+|+..     ....||.||+.+.
T Consensus        13 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           13 EDKYKCEKCHLVL----CSPKQTECGHRFCESCMAALLSS-----SSPKCTACQESIV   61 (66)
T ss_dssp             CCCEECTTTCCEE----SSCCCCSSSCCCCHHHHHHHHTT-----SSCCCTTTCCCCC
T ss_pred             CcCCCCCCCChHh----cCeeECCCCCHHHHHHHHHHHHh-----CcCCCCCCCcCCC
Confidence            4579999999999    79999999999999999999963     3568999999876

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.52  E-value=1.6e-15  Score=99.36  Aligned_cols=50  Identities=28%  Similarity=0.612  Sum_probs=43.9

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +++.+.|+||++.|    .+|++++|||+||..||.+|+..     ....||.||..+.
T Consensus        28 l~~~~~C~IC~~~~----~~pv~~~CgH~FC~~Ci~~~~~~-----~~~~CP~Cr~~~~   77 (141)
T 3knv_A           28 LEAKYLCSACRNVL----RRPFQAQCGHRYCSFCLASILSS-----GPQNCAACVHEGI   77 (141)
T ss_dssp             CCGGGBCTTTCSBC----SSEEECTTSCEEEHHHHHHHGGG-----SCEECHHHHHTTC
T ss_pred             CCcCcCCCCCChhh----cCcEECCCCCccCHHHHHHHHhc-----CCCCCCCCCCccc
Confidence            45689999999999    89999999999999999999875     3568999998754

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=7e-15  Score=85.67  Aligned_cols=49  Identities=24%  Similarity=0.612  Sum_probs=43.3

Q ss_pred             cCccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      ++.+.|+||++.|    .+|+++ +|||+||..||.+|+..      ...||.||+.+..
T Consensus        13 ~~~~~C~IC~~~~----~~p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~   62 (72)
T 2djb_A           13 TPYILCSICKGYL----IDATTITECLHTFCKSCIVRHFYY------SNRCPKCNIVVHQ   62 (72)
T ss_dssp             CGGGSCTTTSSCC----SSCEECSSSCCEECHHHHHHHHHH------CSSCTTTCCCCCS
T ss_pred             CCCCCCCCCChHH----HCcCEECCCCCHHHHHHHHHHHHc------CCcCCCcCcccCc
Confidence            4589999999999    789987 89999999999999976      4589999998764

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.51  E-value=8.8e-15  Score=92.67  Aligned_cols=50  Identities=24%  Similarity=0.493  Sum_probs=44.1

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      .+.+.|+||++.+    .+|+.++|||+||..||.+|+..     ....||.||..+..
T Consensus        21 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           21 VKSISCQICEHIL----ADPVETSCKHLFCRICILRCLKV-----MGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHHTBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHH-----TCSBCTTTCCBCCG
T ss_pred             cCCCCCCCCCcHh----cCcEEcCCCCcccHHHHHHHHhH-----CcCcCCCCCCCCCH
Confidence            3478999999999    79999999999999999999987     24589999998774

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.5e-14  Score=84.08  Aligned_cols=47  Identities=32%  Similarity=0.779  Sum_probs=42.0

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +.+.|+||++.+    .+|+.++|||+||..||.+|+..      ...||+||..+.
T Consensus        14 ~~~~C~IC~~~~----~~~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~   60 (71)
T 2d8t_A           14 TVPECAICLQTC----VHPVSLPCKHVFCYLCVKGASWL------GKRCALCRQEIP   60 (71)
T ss_dssp             SCCBCSSSSSBC----SSEEEETTTEEEEHHHHHHCTTC------SSBCSSSCCBCC
T ss_pred             CCCCCccCCccc----CCCEEccCCCHHHHHHHHHHHHC------CCcCcCcCchhC
Confidence            478999999999    79999999999999999999875      368999998765

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.46  E-value=3e-14  Score=81.35  Aligned_cols=53  Identities=23%  Similarity=0.513  Sum_probs=41.2

Q ss_pred             Cccccccccc-cccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         29 SFLTCGTCLC-MYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        29 ~~l~C~iC~~-~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +++.|+||++ .|.+....+++++|||+||..|+.+|+..     ....||.||+.+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----GAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-----TSSSCTTTCCCCSS
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-----CCCcCCCCCCcccc
Confidence            3688999999 88422222257899999999999999875     35689999998763

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.45  E-value=4.9e-15  Score=82.41  Aligned_cols=50  Identities=38%  Similarity=0.883  Sum_probs=42.3

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCC
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGV   91 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~   91 (129)
                      +.+.|+||++.|    .+|++++|||+||..|+..         ....||.||+.+..+.+++
T Consensus         5 ~~~~C~IC~~~~----~~p~~l~CgH~fC~~Ci~~---------~~~~CP~Cr~~~~~~~~~~   54 (56)
T 1bor_A            5 QFLRCQQCQAEA----KCPKLLPCLHTLCSGCLEA---------SGMQCPICQAPWPLGADTP   54 (56)
T ss_dssp             CCSSCSSSCSSC----BCCSCSTTSCCSBTTTCSS---------SSSSCSSCCSSSSCCSSCC
T ss_pred             cCCCceEeCCcc----CCeEEcCCCCcccHHHHcc---------CCCCCCcCCcEeecCCcCc
Confidence            478999999999    7999999999999999865         2458999999988765443

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.45  E-value=3.4e-14  Score=100.77  Aligned_cols=69  Identities=16%  Similarity=0.295  Sum_probs=60.2

Q ss_pred             CccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCcccccc--CCcceeeCCCCCCCCChhHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPI--CREQITIPRGGVAALPPSFLVNQLLD  105 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~--Cr~~~~~~~~~~~~~~~n~~l~~l~~  105 (129)
                      .++.||||+++|    .+|++. .|||+||..||.+|+..    ++.+.||.  |++.+..     +.+.+|..+.++++
T Consensus       180 ~el~CPIcl~~f----~DPVts~~CGHsFcR~cI~~~~~~----~~~~~CPvtGCr~~l~~-----~dL~pN~~L~~lve  246 (267)
T 3htk_C          180 IELTCPITCKPY----EAPLISRKCNHVFDRDGIQNYLQG----YTTRDCPQAACSQVVSM-----RDFVRDPIMELRCK  246 (267)
T ss_dssp             CCSBCTTTSSBC----SSEEEESSSCCEEEHHHHHHHSTT----CSCEECSGGGCSCEECG-----GGEEECHHHHHHHH
T ss_pred             eeeECcCccCcc----cCCeeeCCCCCcccHHHHHHHHHh----CCCCCCCcccccCcCch-----hhCCcCHHHHHHHH
Confidence            489999999999    899986 89999999999999876    34689999  9998775     47899999999998


Q ss_pred             HHHhh
Q psy11857        106 LMSRQ  110 (129)
Q Consensus       106 ~~~~~  110 (129)
                      .++..
T Consensus       247 ~~k~r  251 (267)
T 3htk_C          247 IAKMK  251 (267)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.44  E-value=4.4e-14  Score=77.90  Aligned_cols=51  Identities=24%  Similarity=0.577  Sum_probs=43.0

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +...|+||++.|..++..++.++|||.||..|+.+|+..      ...||.||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE------GYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH------TCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc------CCcCCCCCCcCC
Confidence            367899999999654556889999999999999999997      268999998653

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.44  E-value=2.6e-14  Score=82.78  Aligned_cols=52  Identities=25%  Similarity=0.608  Sum_probs=41.8

Q ss_pred             CccccccccccccC---CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         29 SFLTCGTCLCMYDG---GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        29 ~~l~C~iC~~~~~~---~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +.+.|+||++.|..   +...++.++|||+||..|+.+|+..      ...||.||..+..
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINH   63 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH------CSBCTTTCCBCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc------CCCCCCCCCccCh
Confidence            47899999999941   1122288999999999999999987      3589999998773

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=3.2e-14  Score=81.82  Aligned_cols=52  Identities=25%  Similarity=0.592  Sum_probs=41.4

Q ss_pred             cCccccccccccccCC---CCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGG---EHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~---~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+.+.|+||++.|...   .+.++.++|||.||..||..|+..      ...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH------CSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc------CCCCCCCCCccC
Confidence            3478999999999421   122388999999999999999987      348999998764

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=6.5e-14  Score=77.96  Aligned_cols=46  Identities=26%  Similarity=0.780  Sum_probs=39.1

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPIC   80 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C   80 (129)
                      .+.+.|+||++.+    .+|++++|||+||..||.+|+...   .....||.|
T Consensus        13 ~~~~~C~IC~~~~----~~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYL----KEPVIIECGHNFCKACITRWWEDL---ERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBC----SSCCCCSSCCCCCHHHHHHHTTSS---CCSCCCSCC
T ss_pred             ccCCCCccCCccc----CccEeCCCCCccCHHHHHHHHHhc---CCCCCCCCC
Confidence            3578999999999    789999999999999999997642   246789987

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.42  E-value=7e-14  Score=93.97  Aligned_cols=66  Identities=23%  Similarity=0.440  Sum_probs=52.6

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      +.+.+.|+||++.|    .+|++++|||+||..||.+|+...     ...||.||..+...     .+.++..+.+++..
T Consensus        15 ~~~~~~C~IC~~~~----~~pv~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~-----~~~~~~~~~~~i~~   80 (170)
T 3hcs_A           15 LESKYECPICLMAL----REAVQTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLEN-----QLFPDNFAKREILS   80 (170)
T ss_dssp             CCGGGBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCGG-----GCEECHHHHHHHHT
T ss_pred             CCCCCCCCCCChhh----cCcEECCCCCHHHHHHHHHHHHhC-----CCCCCCCccCcchh-----hhhhhHHHHHHHhh
Confidence            44589999999999    799999999999999999999862     34899999987643     34456666665553

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=9.1e-14  Score=81.47  Aligned_cols=52  Identities=25%  Similarity=0.730  Sum_probs=41.6

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ..+...|+||++.|..+ ...+.++|||.||..||.+|+..      ...||+||+.+.
T Consensus        20 ~~~~~~C~IC~~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~~------~~~CP~Cr~~~~   71 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESR-QLLRVLPCNHEFHAKCVDKWLKA------NRTCPICRADSG   71 (75)
T ss_dssp             SSSCCEETTTTEECCBT-CEEEEETTTEEEETTHHHHHHHH------CSSCTTTCCCCC
T ss_pred             cCCCCCCeECCcccCCC-CeEEEECCCCHhHHHHHHHHHHc------CCcCcCcCCcCC
Confidence            34578999999999421 12378899999999999999987      348999998775

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.40  E-value=7.5e-14  Score=79.11  Aligned_cols=51  Identities=25%  Similarity=0.664  Sum_probs=41.2

Q ss_pred             CccccccccccccC---CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDG---GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~---~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +.+.|+||++.+..   ..+.++.++|||.||..|+.+|+..      ...||.||+.+.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~   55 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKIN   55 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH------CSBCTTTCCBCT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc------CCCCCCCCccCC
Confidence            36789999999942   1123388999999999999999987      458999998876

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.39  E-value=3.3e-13  Score=77.75  Aligned_cols=52  Identities=27%  Similarity=0.659  Sum_probs=42.3

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      .....|+||++.|.. ...++.++|||.||..||.+|+..      ...||.||..+..
T Consensus        12 ~~~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           12 DTEEKCTICLSILEE-GEDVRRLPCMHLFHQVCVDQWLIT------NKKCPICRVDIEA   63 (69)
T ss_dssp             TCCCSBTTTTBCCCS-SSCEEECTTSCEEEHHHHHHHHHH------CSBCTTTCSBSCS
T ss_pred             CCCCCCeeCCccccC-CCcEEEeCCCCHHHHHHHHHHHHc------CCCCcCcCccccC
Confidence            346889999998842 235778999999999999999987      2369999998763

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.38  E-value=1.4e-13  Score=79.06  Aligned_cols=47  Identities=28%  Similarity=0.665  Sum_probs=40.6

Q ss_pred             CccccccccccccCCCCce-EeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTP-KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p-~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +...|+||++.+    .+| +.++|||.||..|+.+|+..      ...||.||..+.
T Consensus         4 ~~~~C~IC~~~~----~~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDP----SNYSMALPCLHAFCYVCITRWIRQ------NPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCC----CSCEEETTTTEEESTTHHHHHHHH------SCSTTTTCCCCC
T ss_pred             CCCCCeeCCccc----cCCcEecCCCCeeHHHHHHHHHhC------cCcCcCCChhhH
Confidence            467899999999    565 78899999999999999986      358999998865

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.37  E-value=2.1e-13  Score=82.84  Aligned_cols=51  Identities=27%  Similarity=0.580  Sum_probs=41.6

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+...|+||++.|..+ ..++.++|||.||..||..|+..      ...||.||..+.
T Consensus        38 ~~~~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~   88 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKG-DVATELPCHHYFHKPCVSIWLQK------SGTCPVCRCMFP   88 (91)
T ss_dssp             SSCSEETTTTEECCTT-CEEEEETTTEEEEHHHHHHHHTT------TCBCTTTCCBSS
T ss_pred             CCCCCCcccChhhcCC-CcEEecCCCChHHHHHHHHHHHc------CCcCcCcCccCC
Confidence            3578899999998421 23778999999999999999976      348999998765

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.37  E-value=1.5e-13  Score=81.33  Aligned_cols=52  Identities=25%  Similarity=0.609  Sum_probs=40.9

Q ss_pred             cCccccccccccccCCCCceEeec--CCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLP--CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~--CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      ++++.||||++.++.  .++.+++  |||+||..|+.+++..     ....||.||+.+..
T Consensus         9 ~~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~-----~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            9 EDPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTD-----ENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTS-----SCSBCTTTCCBCSS
T ss_pred             ccCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhc-----CCCCCCCCCCccCC
Confidence            457899999998852  2344555  9999999999988754     35789999998763

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.36  E-value=1.6e-13  Score=75.69  Aligned_cols=51  Identities=27%  Similarity=0.748  Sum_probs=40.6

Q ss_pred             cCccccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ++...|+||++.|..+ ..++.++ |||.||..|+.+|+..      ...||.||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~~------~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDG-EEARFLPRCGHGFHAECVDMWLGS------HSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTT-SCCEECSSSCCEECTTHHHHTTTT------CCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCC-CceEECCCCCCcccHHHHHHHHHc------CCcCcCCCCEeE
Confidence            3478899999999432 2367777 9999999999999875      458999998753

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.33  E-value=2.7e-13  Score=79.89  Aligned_cols=52  Identities=31%  Similarity=0.598  Sum_probs=41.5

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      .+...|+||++.|..+ ...+.++|||.||..||.+|+..      ...||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~   64 (78)
T 2ect_A           13 GSGLECPVCKEDYALG-ESVRQLPCNHLFHDSCIVPWLEQ------HDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSCCCTTTTSCCCTT-SCEEECTTSCEEETTTTHHHHTT------TCSCTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCC-CCEEEeCCCCeecHHHHHHHHHc------CCcCcCcCCccCC
Confidence            3478999999999421 23356799999999999999875      3589999998874

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.31  E-value=4.4e-13  Score=86.08  Aligned_cols=48  Identities=27%  Similarity=0.683  Sum_probs=41.9

Q ss_pred             cCccccccccccccCCCCce-------EeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTP-------KLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p-------~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+.+.|+||++.|    .+|       +.++|||+||..||.+|+..      ...||.||+.+.
T Consensus         5 ~~~~~C~IC~~~~----~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~   59 (133)
T 4ap4_A            5 SGTVSCPICMDGY----SEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKIN   59 (133)
T ss_dssp             CCSCBCTTTCCBH----HHHHHTTCCEEEETTCCEEEHHHHHHHHTT------CSBCTTTCCBCT
T ss_pred             CCCCCCcccChhh----hCccccccCeEecCCCChhhHHHHHHHHHh------CCCCCCCCCcCc
Confidence            3578999999999    466       89999999999999999986      348999999876

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.3e-12  Score=76.25  Aligned_cols=50  Identities=22%  Similarity=0.539  Sum_probs=40.0

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +...|+||++.|..+ ...+.++|||.||..||.+|+..      ...||+||+.+.
T Consensus        14 ~~~~C~IC~~~~~~~-~~~~~~~C~H~f~~~Ci~~~~~~------~~~CP~Cr~~~~   63 (74)
T 2ep4_A           14 LHELCAVCLEDFKPR-DELGICPCKHAFHRKCLIKWLEV------RKVCPLCNMPVL   63 (74)
T ss_dssp             CSCBCSSSCCBCCSS-SCEEEETTTEEEEHHHHHHHHHH------CSBCTTTCCBCS
T ss_pred             CCCCCcCCCcccCCC-CcEEEcCCCCEecHHHHHHHHHc------CCcCCCcCcccc
Confidence            468899999999421 22345699999999999999987      238999999876

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.5e-13  Score=78.45  Aligned_cols=47  Identities=32%  Similarity=0.771  Sum_probs=40.7

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+.+.|+||++.+    .+ ++++|||.||..|+.+|+..      ...||.||..+.
T Consensus        13 ~~~~~C~IC~~~~----~~-~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~   59 (70)
T 2ecn_A           13 TDEEECCICMDGR----AD-LILPCAHSFCQKCIDKWSDR------HRNCPICRLQMT   59 (70)
T ss_dssp             CCCCCCSSSCCSC----CS-EEETTTEEECHHHHHHSSCC------CSSCHHHHHCTT
T ss_pred             CCCCCCeeCCcCc----cC-cccCCCCcccHHHHHHHHHC------cCcCCCcCCccc
Confidence            3478999999999    45 89999999999999998774      568999998876

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.24  E-value=1.3e-12  Score=76.52  Aligned_cols=44  Identities=27%  Similarity=0.705  Sum_probs=39.0

Q ss_pred             cCccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+.+.|+||++.+    .+|+.++|||. ||..|+..|          ..||.||+.+.
T Consensus        22 ~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~   66 (74)
T 4ic3_A           22 QEEKLCKICMDRN----IAIVFVPCGHLVTCKQCAEAV----------DKCPMCYTVIT   66 (74)
T ss_dssp             HHHTBCTTTSSSB----CCEEEETTCCBCCCHHHHTTC----------SBCTTTCCBCS
T ss_pred             ccCCCCCCCCCCC----CCEEEcCCCChhHHHHhhhcC----------ccCCCcCcCcc
Confidence            3478999999999    89999999999 999999766          38999998875

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.22  E-value=4e-12  Score=80.02  Aligned_cols=56  Identities=25%  Similarity=0.494  Sum_probs=40.9

Q ss_pred             ccccccccccccCCC--------------CceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDGGE--------------HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~--------------~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +..|+||++.|..+.              ...+.++|||.||..||..|+.... ......||+||+.+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCCCCCccCC
Confidence            468999999994211              1122678999999999999996521 1235689999988763

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=8.7e-13  Score=77.35  Aligned_cols=44  Identities=27%  Similarity=0.681  Sum_probs=38.0

Q ss_pred             cCccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .+.+.|+||++.+    .+|+.++|||. ||..|+.+          ...||+||..+.
T Consensus        23 ~~~~~C~IC~~~~----~~~~~~pCgH~~~C~~C~~~----------~~~CP~Cr~~i~   67 (75)
T 2ecg_A           23 QEEKLCKICMDRN----IAIVFVPCGHLVTCKQCAEA----------VDKCPMCYTVIT   67 (75)
T ss_dssp             HHHHSCSSSCSSC----CCBCCSSSCCCCBCHHHHHH----------CSBCTTTCCBCC
T ss_pred             CCCCCCCcCCCCC----CCEEEecCCCHHHHHHHhhC----------CCCCccCCceec
Confidence            3478999999999    79999999999 99999953          248999999876

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.20  E-value=1.4e-12  Score=79.58  Aligned_cols=74  Identities=18%  Similarity=0.424  Sum_probs=48.6

Q ss_pred             CccccccccccccCCCCceEee---cCCchhHHHhHHHHHHhccCCC--Ccccccc--CCcceeeCCCCCCCCChhHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLL---PCSHTVCLHCLSRIAASQTRET--GTLRCPI--CREQITIPRGGVAALPPSFLVN  101 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l---~CgH~fC~~Cl~~~~~~~~~~~--~~~~CP~--Cr~~~~~~~~~~~~~~~n~~l~  101 (129)
                      +.+.|+||++.+    ..|.++   +|||.||..|+.+++......+  ..+.||.  |+....++.    ....+....
T Consensus         4 ~~~~C~IC~~~~----~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~----~~i~~ll~~   75 (94)
T 1wim_A            4 GSSGCKLCLGEY----PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE----NEIECMVAA   75 (94)
T ss_dssp             SBCCCSSSCCCC----BGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH----HHHHHHSCH
T ss_pred             CCcCCcccCccc----ccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH----HHHHHHCCH
Confidence            468899999998    455443   6999999999999987642112  3579999  998732221    122233334


Q ss_pred             HHHHHHHhh
Q psy11857        102 QLLDLMSRQ  110 (129)
Q Consensus       102 ~l~~~~~~~  110 (129)
                      ++.++|.+.
T Consensus        76 ~~~~ky~~~   84 (94)
T 1wim_A           76 EIMQRYKKL   84 (94)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            556666553

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.1e-11  Score=73.64  Aligned_cols=51  Identities=24%  Similarity=0.522  Sum_probs=39.0

Q ss_pred             ccccccccccccC----------CCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDG----------GEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~----------~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +..|+||++.|.+          ++..++.++ |||.|+..||.+|+..      ...||+||+.+..
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~~~~   76 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ------NNRCPLCQQDWVV   76 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT------CCBCTTTCCBCCE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh------CCCCCCcCCCcch
Confidence            5678888888842          223355665 9999999999999886      3489999988653

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.15  E-value=1.7e-11  Score=69.51  Aligned_cols=47  Identities=26%  Similarity=0.694  Sum_probs=40.4

Q ss_pred             CccccccccccccCCCCceEee--cCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLL--PCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ....|+||++.+    ++++++  ||||. ||..|+.+++..      ...||+||+.+.
T Consensus         6 ~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRP----RDGNIIHGRTGHLVTCFHCARRLKKA------GASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSB----SCEEEEETTEEEEEECHHHHHHHHHT------TCBCTTTCCBCC
T ss_pred             cCCCCcccCCcC----CCeEEEecCCCCHhHHHHHHHHHHHh------CCcCCCcCchhh
Confidence            367899999998    788888  99998 999999998865      358999999875

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.15  E-value=2.1e-11  Score=91.13  Aligned_cols=50  Identities=32%  Similarity=0.686  Sum_probs=43.1

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      .....|+||++.+    .+|+.++|||.||..|+..|...     ....||.||..+..
T Consensus       330 ~~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~-----~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          330 STFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQES-----EGQGCPFCRCEIKG  379 (389)
T ss_dssp             TSSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHH-----TCSBCTTTCCBCCE
T ss_pred             CCCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhc-----CCCCCCCCCCccCC
Confidence            3357999999999    79999999999999999999884     24589999998764

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.13  E-value=1.9e-11  Score=69.49  Aligned_cols=47  Identities=21%  Similarity=0.603  Sum_probs=40.5

Q ss_pred             CccccccccccccCCCCceEee--cCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLL--PCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l--~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ++..|+||++.+    ++++.+  ||||. ||..|+.+++..      ...||+||+.+.
T Consensus         7 ~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRP----KNGCIVHGKTGHLMACFTCAKKLKKR------NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSC----SCEEEEETTEEEEEECHHHHHHHHHT------TCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCC----CCEEEECCCCCChhhHHHHHHHHHHc------CCcCCCcCcchh
Confidence            367899999999    788887  99999 899999998875      347999998765

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.11  E-value=2.4e-11  Score=77.90  Aligned_cols=53  Identities=25%  Similarity=0.614  Sum_probs=42.5

Q ss_pred             ccCccccccccccccC---CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         27 NESFLTCGTCLCMYDG---GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~---~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ..+...|+||++.|..   ..+.++.++|||.||..|+.+|+..      ...||.||..+.
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~  124 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKIN  124 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH------CSBCTTTCCBCC
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc------CCCCCCCCCcCC
Confidence            3457899999999941   1222388899999999999999987      459999998876

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.02  E-value=1.2e-10  Score=72.59  Aligned_cols=52  Identities=23%  Similarity=0.412  Sum_probs=40.1

Q ss_pred             CccccccccccccCC-------------CC-ceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         29 SFLTCGTCLCMYDGG-------------EH-TPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~-------------~~-~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +...|+||++.|.+.             +. ..+.++|||.|+..||.+|+..      ...||+||+.+.+
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWEF  101 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT------CSBCSSSCSBCCE
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc------CCcCcCCCCccee
Confidence            467899999998522             11 1345789999999999999886      4589999998654

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.2e-10  Score=66.95  Aligned_cols=45  Identities=33%  Similarity=0.710  Sum_probs=38.5

Q ss_pred             ccCccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ..+...|.||++.+    .+++.+||||. ||..|+..          ...||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~----------~~~CP~CR~~i~   57 (68)
T 2ea5_A           12 EENSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKY----------FQQCPMCRQFVQ   57 (68)
T ss_dssp             CCCSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHH----------CSSCTTTCCCCC
T ss_pred             CCCCCCCCCcCcCC----CCEEEECCCChhhhHHHHhc----------CCCCCCCCcchh
Confidence            34578999999999    89999999999 99999973          248999998875

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.01  E-value=4.8e-11  Score=70.60  Aligned_cols=44  Identities=27%  Similarity=0.760  Sum_probs=38.1

Q ss_pred             CccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +...|+||++.+    .+++.+||||. ||..|+..+          ..||+||..+..
T Consensus        17 ~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~   61 (79)
T 2yho_A           17 EAMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL----------QSCPVCRSRVEH   61 (79)
T ss_dssp             HHTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC----------SBCTTTCCBCCE
T ss_pred             CCCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc----------CcCCCCCchhhC
Confidence            467899999999    89999999999 999999643          389999988763

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=7.9e-10  Score=65.46  Aligned_cols=53  Identities=30%  Similarity=0.631  Sum_probs=43.2

Q ss_pred             CccccccccccccCCCCceEeecCC-----chhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCS-----HTVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~Cg-----H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      +...|.||++.|+.  ..++++||.     |.|+..||.+|+...    +...||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~--~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~----~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           14 SQDICRICHCEGDD--ESPLITPCHCTGSLHFVHQACLQQWIKSS----DTRCCELCKYEFIME   71 (80)
T ss_dssp             TSCCCSSSCCCCCS--SSCEECSSSCCSSSCCEETTHHHHHHHHH----CCSBCSSSCCBCCCC
T ss_pred             CCCCCeEcCccccC--CCeeEeccccCCcCCeeCHHHHHHHHhhC----CCCCCCCCCCeeecC
Confidence            36789999998853  356788996     999999999999973    356899999988753

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.86  E-value=2.5e-10  Score=84.43  Aligned_cols=44  Identities=34%  Similarity=0.825  Sum_probs=39.0

Q ss_pred             cCccccccccccccCCCCceEeecCCch-hHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHT-VCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~-fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ++.+.|+||++.+    .+|+.+||||. ||..|+..+          ..||.||..+.
T Consensus       293 ~~~~~C~IC~~~~----~~~v~lpCgH~~fC~~C~~~~----------~~CP~CR~~i~  337 (345)
T 3t6p_A          293 QEERTCKVCMDKE----VSVVFIPCGHLVVCQECAPSL----------RKCPICRGIIK  337 (345)
T ss_dssp             HTTCBCTTTSSSB----CCEEEETTCCEEECTTTGGGC----------SBCTTTCCBCC
T ss_pred             cCCCCCCccCCcC----CceEEcCCCChhHhHHHHhcC----------CcCCCCCCCcc
Confidence            3578999999999    89999999999 999999755          37999999876

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.86  E-value=1.7e-09  Score=60.83  Aligned_cols=47  Identities=17%  Similarity=0.180  Sum_probs=41.0

Q ss_pred             ccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      .+.|||+++.+    .+|+++ ++||+|++.||.+|+..+      ..||..+..+..
T Consensus         3 ~~~CpIs~~~m----~dPV~~~~sG~~yer~~I~~~l~~~------~~cP~t~~~L~~   50 (61)
T 2bay_A            3 HMLCAISGKVP----RRPVLSPKSRTIFEKSLLEQYVKDT------GNDPITNEPLSI   50 (61)
T ss_dssp             -CCCTTTCSCC----SSEEEETTTTEEEEHHHHHHHHHHH------SBCTTTCCBCCG
T ss_pred             eEEecCCCCCC----CCCEEeCCCCcEEcHHHHHHHHHhC------CCCcCCcCCCCh
Confidence            47899999999    799999 899999999999999873      259999988763

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.72  E-value=1.5e-09  Score=68.68  Aligned_cols=51  Identities=22%  Similarity=0.426  Sum_probs=0.9

Q ss_pred             CccccccccccccC-------------CCCceEe-ecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDG-------------GEHTPKL-LPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~-------------~~~~p~~-l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +.-.|+||++.|..             ++..+++ ++|+|.|+..||.+|+..      ...||+||+.+.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~------~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc------CCcCCCCCCeee
Confidence            35689999999952             1122333 579999999999999986      458999998865

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=7.6e-08  Score=55.97  Aligned_cols=53  Identities=21%  Similarity=0.502  Sum_probs=40.1

Q ss_pred             ccCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         27 NESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        27 ~~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      .+....|.||.+.+..+   -.-..|+|.|...||.+|+...    ....||.|+.....
T Consensus        12 ~~~i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~----~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           12 PDAVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSN----AEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSSSCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTC----SSCCCTTTCSCCCS
T ss_pred             cCCCCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhc----CCCCCCCCcCcCCC
Confidence            34467899999999422   1222799999999999999762    34689999987663

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.49  E-value=6.5e-08  Score=58.80  Aligned_cols=46  Identities=24%  Similarity=0.657  Sum_probs=38.2

Q ss_pred             ccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        32 ~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .|++|.-.+.   .-.+++||.|.||..|+..|...     ....||.|+..+.
T Consensus         3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~-----~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKK-----GDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHT-----TCCBCTTTCCBCS
T ss_pred             ecCccCCCeE---EEeeeccccccHHHHHHHHHHhc-----cCCCCcCcCCeee
Confidence            5899998885   45678999999999999998875     3568999997765

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.21  E-value=7.1e-07  Score=49.75  Aligned_cols=49  Identities=20%  Similarity=0.369  Sum_probs=38.7

Q ss_pred             CccccccccccccCCCCceEeecCC--c---hhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCS--H---TVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~Cg--H---~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +...|.||++..    ..+.++||.  +   .|...|+.+|+...    +...||+|+..+.
T Consensus         5 ~~~~CrIC~~~~----~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~----~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEEL----GNERFRACGCTGELENVHRSCLSTWLTIS----RNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEEC----SCCCCCSCCCSSGGGSCCHHHHHHHHHHH----TCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCC----CCceecCcCCCCchhhhHHHHHHHHHHhC----CCCccCCCCCeee
Confidence            467899999875    456778865  4   79999999999873    4579999998765

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.03  E-value=1.9e-06  Score=63.41  Aligned_cols=58  Identities=19%  Similarity=0.461  Sum_probs=42.1

Q ss_pred             CccccccccccccCCCCceEe----ecCCchhHHHhHHHHHHhccCC-----CCccccccCCcceee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKL----LPCSHTVCLHCLSRIAASQTRE-----TGTLRCPICREQITI   86 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~----l~CgH~fC~~Cl~~~~~~~~~~-----~~~~~CP~Cr~~~~~   86 (129)
                      ....|+||+..+...+..|..    ..|||.|...|+.+|+......     .....||.||+.+..
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            467899999998643444533    4699999999999999863210     112579999998773

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.54  E-value=2.6e-05  Score=47.48  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=27.1

Q ss_pred             CccccccccccccCCCCceEe--ecCCchhHHHhHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKL--LPCSHTVCLHCLSRI   64 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~--l~CgH~fC~~Cl~~~   64 (129)
                      +++.|+||.+.+.   ..|+.  +.|+|+||..|+..+
T Consensus         2 ee~~C~~C~~~~~---~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPA---QDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSC---CBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCC---CCceEECCcCChHHhHHHCHHH
Confidence            3689999997532   67777  899999999999973

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=96.75  E-value=0.0014  Score=54.10  Aligned_cols=68  Identities=15%  Similarity=0.171  Sum_probs=58.7

Q ss_pred             CccccccccccccCCCCceEeecCC-chhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCS-HTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM  107 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~Cg-H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~  107 (129)
                      +++.|||=++++    ++|++++-| +||=+..|.+|+..      ..+||+=|..+..     ..+.+|+.++..++.+
T Consensus       890 ~~F~cPIs~~lM----~DPVilpsG~~TydR~~I~~wl~~------~~tdP~Tr~~L~~-----~~liPN~~Lk~~I~~w  954 (968)
T 3m62_A          890 DEFLDPLMYTIM----KDPVILPASKMNIDRSTIKAHLLS------DSTDPFNRMPLKL-----EDVTPNEELRQKILCF  954 (968)
T ss_dssp             GGGBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHHTT------CCBCTTTCCBCCG-----GGCEECHHHHHHHHHH
T ss_pred             HHhCCcchhhHH----hCCeEcCCCCEEECHHHHHHHHhc------CCCCCCCCCCCCc-----ccccccHHHHHHHHHH
Confidence            379999999999    899999997 69999999999976      3389998888774     3688999999999998


Q ss_pred             Hhhc
Q psy11857        108 SRQR  111 (129)
Q Consensus       108 ~~~~  111 (129)
                      ...+
T Consensus       955 ~~~~  958 (968)
T 3m62_A          955 KKQK  958 (968)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=96.65  E-value=0.0017  Score=45.54  Aligned_cols=48  Identities=21%  Similarity=0.514  Sum_probs=37.8

Q ss_pred             ccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ...|.+|.++..    .-..- .|+|.|...|+..|+..    .....||.|+....
T Consensus       180 i~~C~iC~~iv~----~g~~C~~C~~~~H~~C~~~~~~~----~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          180 VKICNICHSLLI----QGQSCETCGIRMHLPCVAKYFQS----NAEPRCPHCNDYWP  228 (238)
T ss_dssp             CCBCTTTCSBCS----SCEECSSSCCEECHHHHHHHTTT----CSSCBCTTTCCBCC
T ss_pred             CCcCcchhhHHh----CCcccCccChHHHHHHHHHHHHh----CCCCCCCCCCCCCC
Confidence            568999999984    22333 39999999999999876    34568999998755

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=94.15  E-value=0.018  Score=33.40  Aligned_cols=48  Identities=27%  Similarity=0.461  Sum_probs=33.6

Q ss_pred             ccccccccccccCCCCceEeec--CCchhHHHhHHHHHHhccCCCCccccccC
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLP--CSHTVCLHCLSRIAASQTRETGTLRCPIC   80 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~--CgH~fC~~Cl~~~~~~~~~~~~~~~CP~C   80 (129)
                      .+.|.+|.+.+..  ..-+.-|  =+|.||..|-...++.+.. +....||.-
T Consensus        15 ~l~CtlC~erLEd--tHFVQCPsv~~HkFCFpCsr~sIk~q~~-~~EvyCPSG   64 (93)
T 2cs3_A           15 PLCCTICHERLED--THFVQCPSVPSHKFCFPCSRESIKAQGA-TGEVYCPSG   64 (93)
T ss_dssp             SCCCSSSCSCCSS--TTSEECSSCSSCEECHHHHHHHHHHHHS-SSCCCCTTS
T ss_pred             eeEeecchhhhcc--CceeeCCCccCCeeeccccHHHHHhcCC-CCcEECCCC
Confidence            6899999999831  2223333  5899999999998887643 345666654

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=93.27  E-value=0.071  Score=39.61  Aligned_cols=65  Identities=23%  Similarity=0.455  Sum_probs=47.2

Q ss_pred             ccccccccccccCCCCceEee-cCCchhHHH--hHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCLH--CLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~--Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      .+.||+=...+    ..|+.- .|.|.-|..  =+......    ...+.||+|.+.+..     ++|..+..+.++++.
T Consensus       249 SL~CPlS~~ri----~~PvRg~~C~HlQCFDl~sfL~~~~~----~~~W~CPIC~k~~~~-----~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          249 SLQCPISYTRM----KYPSKSINCKHLQCFDALWFLHSQLQ----IPTWQCPVCQIDIAL-----ENLAISEFVDDILQN  315 (371)
T ss_dssp             ESBCTTTSSBC----SSEEEETTCCSSCCEEHHHHHHHHHH----SCCCBCTTTCCBCCG-----GGEEEBHHHHHHHTT
T ss_pred             eecCCCccccc----cccCcCCcCCCcceECHHHHHHHhhc----CCceeCCCCCcccCH-----HHeeEcHHHHHHHHh
Confidence            68999999999    688755 599985543  34444333    468999999988775     367777777777664


Q ss_pred             H
Q psy11857        107 M  107 (129)
Q Consensus       107 ~  107 (129)
                      .
T Consensus       316 ~  316 (371)
T 3i2d_A          316 C  316 (371)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=92.96  E-value=0.084  Score=39.09  Aligned_cols=65  Identities=20%  Similarity=0.353  Sum_probs=46.9

Q ss_pred             ccccccccccccCCCCceEee-cCCchhHH--HhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLL-PCSHTVCL--HCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDL  106 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~--~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~  106 (129)
                      .+.||+=...+    ..|..- .|.|.-|.  .=+......    ...+.||+|.+.+..     ++|..+..+.+++..
T Consensus       215 SL~CPlS~~ri----~~P~Rg~~C~HlqCFDl~sfL~~~~~----~~~W~CPiC~k~~~~-----~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          215 SLMCPLGKMRL----TIPCRAVTCTHLQCFDAALYLQMNEK----KPTWICPVCDKKAAY-----ESLILDGLFMEILND  281 (360)
T ss_dssp             ESBCTTTCSBC----SSEEEETTCCCCCCEEHHHHHHHHHH----SCCCBCTTTCSBCCG-----GGEEEBHHHHHHHTT
T ss_pred             eeeCCCcccee----ccCCcCCCCCCCccCCHHHHHHHHhh----CCCeECCCCCcccCH-----HHeEEcHHHHHHHHh
Confidence            68999999999    678755 69998444  334444333    468999999998775     357777777777664


Q ss_pred             H
Q psy11857        107 M  107 (129)
Q Consensus       107 ~  107 (129)
                      .
T Consensus       282 ~  282 (360)
T 4fo9_A          282 C  282 (360)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=87.50  E-value=0.6  Score=27.53  Aligned_cols=51  Identities=22%  Similarity=0.385  Sum_probs=36.6

Q ss_pred             ccccccccccccC-CCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDG-GEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~-~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      .-.|.||.+..-. .+-++.+.  .|+-..|+.|+.--...     ....||.|+..+.
T Consensus        16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke-----G~q~CpqCktrYk   69 (93)
T 1weo_A           16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE-----GTQNCPQCKTRYK   69 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT-----SCSSCTTTCCCCC
T ss_pred             CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc-----cCccccccCCccc
Confidence            4679999998541 22234443  58889999999765554     5678999998875

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=84.93  E-value=0.4  Score=27.04  Aligned_cols=33  Identities=15%  Similarity=0.211  Sum_probs=23.5

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS   62 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~   62 (129)
                      .-.|.+|...|+-..+.-.=-.||..||..|..
T Consensus        11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~   43 (73)
T 1vfy_A           11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS   43 (73)
T ss_dssp             CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred             CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence            357999999986332333334799999999974

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=84.86  E-value=0.34  Score=30.39  Aligned_cols=34  Identities=15%  Similarity=0.395  Sum_probs=24.2

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR   63 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~   63 (129)
                      ...|.+|...|+-..+.-.--.||+.||..|...
T Consensus        69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~  102 (125)
T 1joc_A           69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK  102 (125)
T ss_dssp             CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred             CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence            4579999999953323333347999999999754

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=84.43  E-value=0.39  Score=27.88  Aligned_cols=34  Identities=18%  Similarity=0.511  Sum_probs=25.0

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR   63 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~   63 (129)
                      ...|.+|...|+-..+.-.=-.||..||..|...
T Consensus        21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~   54 (84)
T 1z2q_A           21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH   54 (84)
T ss_dssp             CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred             CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence            5689999999964333333447999999999754

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=84.25  E-value=0.36  Score=27.91  Aligned_cols=34  Identities=21%  Similarity=0.447  Sum_probs=24.6

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR   63 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~   63 (129)
                      ...|.+|...|+-..+.-.=-.||..||..|...
T Consensus        19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~   52 (82)
T 2yw8_A           19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN   52 (82)
T ss_dssp             CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred             CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence            4579999999963333333347999999999754

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}

Probab=83.61  E-value=0.43  Score=28.12  Aligned_cols=35  Identities=17%  Similarity=0.388  Sum_probs=25.1

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRI   64 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~   64 (129)
                      ...|.+|...|+...+.-.--.||+.||..|....
T Consensus        20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~   54 (90)
T 3t7l_A           20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK   54 (90)
T ss_dssp             CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred             CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence            45799999998633333334479999999997543

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1

Probab=81.98  E-value=0.45  Score=27.92  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=24.3

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR   63 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~   63 (129)
                      ...|.+|...|+...+.-.=-.||..||..|...
T Consensus         9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~   42 (88)
T 1wfk_A            9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF   42 (88)
T ss_dssp             CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred             CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence            4579999999863323333347999999999754

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.81  E-value=0.5  Score=27.37  Aligned_cols=34  Identities=21%  Similarity=0.487  Sum_probs=24.4

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR   63 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~   63 (129)
                      ...|.+|...|+...+.--=-.||..||..|...
T Consensus        14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~   47 (84)
T 1x4u_A           14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF   47 (84)
T ss_dssp             CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred             CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence            4679999999863333333447999999999643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	9e-07
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-06
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	1e-05
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-05
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	5e-05
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	6e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-04
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	8e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	0.001
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.003

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 9e-07
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 13/63 (20%)

Query: 30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRG 89
          FL C  C          PKLLPC HT+C  CL             ++CPIC+    +   
Sbjct: 6  FLRCQQCQAEAK----CPKLLPCLHTLCSGCLEA---------SGMQCPICQAPWPLGAD 52

Query: 90 GVA 92
            A
Sbjct: 53 TPA 55

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 2e-06
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 23 YEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICRE 82
          Y +   +F  C  C           K+ PC H +C  CL+    S+ +      CP CR 
Sbjct: 16 YCEMGSTFQLCKICAENDK----DVKIEPCGHLMCTSCLTSWQESEGQ-----GCPFCRC 66

Query: 83 QIT 85
          +I 
Sbjct: 67 EIK 69

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 1e-05
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 17 ETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLR 76
          E   I  E    +            G     +L  CSH   L CL  +  +  ++ G+L+
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD-GSLQ 84

Query: 77 CPICREQITIPRG 89
          CP C+       G
Sbjct: 85 CPSCKTIYGEKTG 97

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 1e-05
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 16 VETVSINYEDFNESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTL 75
          V+  +I      +  + C          E T     C+H    HC+SR   ++       
Sbjct: 21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ------ 74

Query: 76 RCPICREQITIPR 88
           CP+   +    +
Sbjct: 75 VCPLDNREWEFQK 87

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 5e-05
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQI 84
          + C  C+   +  +       C + +C  C  RI     R      CP CR+  
Sbjct: 1  VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-----RTDENGLCPACRKPY 49

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 36.4 bits (84), Expect = 6e-05
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI 86
          +  + C  CL   + GE    L  C H     C+     S +       CP+CR  + +
Sbjct: 3  DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS------TCPLCRLTVVV 55

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 28  ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
           +  L C  CL +       P    C H  C  C+ ++   +    G  +CP+C+  IT  
Sbjct: 19  QKILECPICLELI----KEPVSTKCDHIFCKFCMLKLLNQKK---GPSQCPLCKNDITKR 71

Query: 88  RGGVAALPPSFLVNQLLD 105
                +L  S   +QL++
Sbjct: 72  -----SLQESTRFSQLVE 84

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 8e-04
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 16/87 (18%)

Query: 28  ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP 87
           E  L C  C  +         L  C H  C +C+S    +         CP+C     I 
Sbjct: 20  EKLLRCSRCTNIL---REPVCLGGCEHIFCSNCVSDCIGTG--------CPVCYTPAWIQ 68

Query: 88  RGGVAALPPSFLVNQLLDLMSRQRRHI 114
                 L  +  ++ ++ L S+ R  +
Sbjct: 69  -----DLKINRQLDSMIQLCSKLRNLL 90

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 33.0 bits (75), Expect = 0.001
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 9/53 (16%)

Query: 33 CGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
          C  CL       +    LPC H  C  C++R             CP+C+  + 
Sbjct: 8  CPICLEDP---SNYSMALPCLHAFCYVCITRWIRQNP------TCPLCKVPVE 51

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (72), Expect = 0.003
 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 6/56 (10%)

Query: 31 LTCGTCLC-MYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT 85
            C  C    Y        +  C HT+C  C+  +        G   CP C   + 
Sbjct: 4  QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLL-----FVRGAGNCPECGTPLR 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.73
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.71
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.7
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.67
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.67
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.59
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.54
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.54
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.48
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.45
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.44
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.44
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.43
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.19
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.02
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.0
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.84
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	95.08
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	88.4
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	87.37
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	87.04
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	84.53
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	84.01
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	83.59
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	82.79
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	82.3
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	82.22

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.1e-18  Score=102.76  Aligned_cols=69  Identities=14%  Similarity=0.215  Sum_probs=60.0

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS  108 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~  108 (129)
                      +++.||||+++|    ++|++++|||+||..||.+|+..     ....||.|+..+..     ..+.+|..++++++.+.
T Consensus         6 ~~l~CpIc~~l~----~dPv~~~cGhtfc~~ci~~~l~~-----~~~~cP~c~~~l~~-----~~l~pN~~L~~~I~~~l   71 (80)
T d2c2la2           6 DYLCGKISFELM----REPCITPSGITYDRKDIEEHLQR-----VGHFNPVTRSPLTQ-----EQLIPNLAMKEVIDAFI   71 (80)
T ss_dssp             STTBCTTTCSBC----SSEEECSSCCEEETTHHHHHHHH-----TCSSCTTTCCCCCG-----GGCEECHHHHHHHHHHH
T ss_pred             ccccCcCcCchh----hhhcccCCcCeecHHHHHHHHhc-----CCccCCCccccccc-----cccccHHHHHHHHHHHH
Confidence            489999999999    89999999999999999999986     34579999998764     36888999999999987


Q ss_pred             hhc
Q psy11857        109 RQR  111 (129)
Q Consensus       109 ~~~  111 (129)
                      +..
T Consensus        72 ~~~   74 (80)
T d2c2la2          72 SEN   74 (80)
T ss_dssp             TTC
T ss_pred             HHC
Confidence            643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.71  E-value=1.6e-18  Score=101.49  Aligned_cols=68  Identities=19%  Similarity=0.458  Sum_probs=59.5

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLMS  108 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~~  108 (129)
                      +++.||||+++|    ++|++++|||+||..||.+|+..     +...||.|+..+..     ..+.+|+.|+++++.+.
T Consensus         7 ~~l~CpIc~~~m----~dPV~~~cgh~fc~~ci~~~~~~-----~~~~cP~~~~~l~~-----~~l~pN~~L~~~I~~~~   72 (78)
T d1t1ha_           7 EYFRCPISLELM----KDPVIVSTGQTYERSSIQKWLDA-----GHKTCPKSQETLLH-----AGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             SSSSCTTTSCCC----SSEEEETTTEEEEHHHHHHHHTT-----TCCBCTTTCCBCSS-----CCCEECTTTHHHHHHHH
T ss_pred             ccCCCcCcCchh----hCceEccCCCcchHHHHHHHHHH-----CCCCCCcccccCCc-----ccccchHHHHHHHHHHH
Confidence            489999999999    89999999999999999999976     34579999988764     46888999999999887


Q ss_pred             hh
Q psy11857        109 RQ  110 (129)
Q Consensus       109 ~~  110 (129)
                      ++
T Consensus        73 ~~   74 (78)
T d1t1ha_          73 ES   74 (78)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.7e-19  Score=108.62  Aligned_cols=70  Identities=27%  Similarity=0.670  Sum_probs=55.9

Q ss_pred             cCccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM  107 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~  107 (129)
                      ++.+.||||++.|    .+|++++|||+||..||.+|+...   .....||.||..+..     ..+.+|..+.++++.+
T Consensus        19 ~~~l~CpIC~~~~----~~pv~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~-----~~l~~n~~l~~~ve~l   86 (103)
T d1jm7a_          19 QKILECPICLELI----KEPVSTKCDHIFCKFCMLKLLNQK---KGPSQCPLCKNDITK-----RSLQESTRFSQLVEEL   86 (103)
T ss_dssp             HHHTSCSSSCCCC----SSCCBCTTSCCCCSHHHHHHHHSS---SSSCCCTTTSCCCCT-----TTCBCCCSSSHHHHHH
T ss_pred             ccCcCCCccCchh----CCeEEcCCCCchhhHHHHHHHHHC---CCCCcCcCCCCcCCh-----hhCCcCHHHHHHHHHH
Confidence            3478999999999    799999999999999999998763   245689999998763     3566676666666666


Q ss_pred             Hh
Q psy11857        108 SR  109 (129)
Q Consensus       108 ~~  109 (129)
                      .+
T Consensus        87 ~~   88 (103)
T d1jm7a_          87 LK   88 (103)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.3e-18  Score=103.55  Aligned_cols=66  Identities=27%  Similarity=0.644  Sum_probs=56.2

Q ss_pred             CccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM  107 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~  107 (129)
                      +.+.|+||++.|    .+|+++ +|||+||..||.+|+..        .||.||..+..     ..+.+|..+.++++.+
T Consensus        21 ~~l~C~IC~~~~----~~pv~~~~CgH~fC~~Ci~~~~~~--------~CP~Cr~~~~~-----~~l~~n~~l~~lv~~~   83 (97)
T d1jm7b_          21 KLLRCSRCTNIL----REPVCLGGCEHIFCSNCVSDCIGT--------GCPVCYTPAWI-----QDLKINRQLDSMIQLC   83 (97)
T ss_dssp             HTTSCSSSCSCC----SSCBCCCSSSCCBCTTTGGGGTTT--------BCSSSCCBCSC-----SSCCCCHHHHHHHHHH
T ss_pred             hcCCCccCCchh----hcCceeCCCCCchhHHHHHHHHhc--------cccccCCcCch-----hhCcccHHHHHHHHHH
Confidence            478999999999    799976 79999999999998754        59999988764     3688999999999988


Q ss_pred             Hhhc
Q psy11857        108 SRQR  111 (129)
Q Consensus       108 ~~~~  111 (129)
                      +..+
T Consensus        84 ~~~~   87 (97)
T d1jm7b_          84 SKLR   87 (97)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.8e-17  Score=98.33  Aligned_cols=48  Identities=25%  Similarity=0.544  Sum_probs=42.7

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +.+.|+||++.|    .+|++++|||+||..||.+|+..     ....||.||..+.
T Consensus        22 ~~l~C~IC~~~~----~~pv~~~CgH~FC~~Ci~~~~~~-----~~~~CP~Cr~p~~   69 (86)
T d1rmda2          22 KSISCQICEHIL----ADPVETSCKHLFCRICILRCLKV-----MGSYCPSCRYPCF   69 (86)
T ss_dssp             HHTBCTTTCSBC----SSEEECTTSCEEEHHHHHHHHHH-----TCSBCTTTCCBCC
T ss_pred             cCcCCccCCcch----hcceecCCCChhhHHHHHHHHhh-----CCCcCcccCCCCC
Confidence            478999999999    79999999999999999999976     2447999999876

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6e-16  Score=94.01  Aligned_cols=69  Identities=19%  Similarity=0.212  Sum_probs=59.6

Q ss_pred             CccccccccccccCCCCceEeecCC-chhHHHhHHHHHHhccCCCCccccccCCcceeeCCCCCCCCChhHHHHHHHHHH
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCS-HTVCLHCLSRIAASQTRETGTLRCPICREQITIPRGGVAALPPSFLVNQLLDLM  107 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~Cg-H~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~n~~l~~l~~~~  107 (129)
                      ++|.||||+++|    .+|++++|| |+||..||.+|+..      ...||.|+..+..     ..+.+|..++++++.+
T Consensus        21 ~~f~CPI~~~lm----~dPV~~~~~~~ty~r~~I~~~l~~------~~~~P~~~~~l~~-----~~L~pN~~Lr~~I~~~   85 (98)
T d1wgma_          21 DEFLDPIMSTLM----CDPVVLPSSRVTVDRSTIARHLLS------DQTDPFNRSPLTM-----DQIRPNTELKEKIQRW   85 (98)
T ss_dssp             TTTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHHTTT------SCBCTTTCSBCCT-----TTSEECHHHHHHHHHH
T ss_pred             HHhCCcCchhHH----HHHHhcccccchhhHHHHHHHHHh------cCCcccccccccc-----hhhcchHHHHHHHHHH
Confidence            379999999999    899999966 58999999999875      3479999998764     4788999999999999


Q ss_pred             Hhhcc
Q psy11857        108 SRQRR  112 (129)
Q Consensus       108 ~~~~~  112 (129)
                      .+++.
T Consensus        86 ~~~~~   90 (98)
T d1wgma_          86 LAERK   90 (98)
T ss_dssp             HHHST
T ss_pred             HHHHH
Confidence            88754

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.9e-16  Score=83.90  Aligned_cols=50  Identities=22%  Similarity=0.517  Sum_probs=42.1

Q ss_pred             cccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        31 l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +.||||++.|+.++..++.++|||.||..|+.+|+..     ....||.||+.+.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~-----~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-----ENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTT-----SCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhh-----cCCCCCccCCcCC
Confidence            5799999999766666777899999999999999875     3457999998764

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.3e-15  Score=89.09  Aligned_cols=48  Identities=33%  Similarity=0.702  Sum_probs=42.0

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      ...|+||++.+    .+|++++|||+||..||.+|+..     +...||+||..+..
T Consensus        23 ~~~C~IC~~~~----~~~~~~~CgH~fC~~Ci~~wl~~-----~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          23 FQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQES-----EGQGCPFCRCEIKG   70 (79)
T ss_dssp             TTBCTTTSSSB----CCEECSSSCCEECHHHHHHHHHT-----TCCSCTTTCCCCCC
T ss_pred             CCCCccCCCcC----CCeEEeCCCCeeeHHHHHHHHHH-----CcCcCCCCCcCccC
Confidence            45799999999    79999999999999999999975     34579999998863

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=9.8e-15  Score=79.85  Aligned_cols=46  Identities=22%  Similarity=0.262  Sum_probs=40.7

Q ss_pred             cccccccccccCCCCceEeec-CCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         31 LTCGTCLCMYDGGEHTPKLLP-CSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        31 l~C~iC~~~~~~~~~~p~~l~-CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +.|+||++.+    ++|+.++ |||+||..||.+|+..      ...||.||+.+..
T Consensus         1 l~C~Ic~~~~----~~Pv~~~~cGh~fc~~cI~~~l~~------~~~CP~c~~~l~~   47 (56)
T d2baya1           1 MLCAISGKVP----RRPVLSPKSRTIFEKSLLEQYVKD------TGNDPITNEPLSI   47 (56)
T ss_dssp             CCCTTTCSCC----SSEEEETTTTEEEEHHHHHHHHHH------HSBCTTTCCBCCG
T ss_pred             CCCccCCchH----HhcCccCCCCCcccHHHHHHHHhh------ccCCCccCCcCCH
Confidence            5799999999    8999885 9999999999999998      3479999988763

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.9e-14  Score=80.99  Aligned_cols=52  Identities=21%  Similarity=0.462  Sum_probs=40.4

Q ss_pred             Ccccccccccccc-CCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYD-GGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~-~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ++..||||++.+. .++...++++|||+||..||.+|+..     ....||.||+.+.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----~~~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----GAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-----TSSSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCc-----CcCCCCCCCcCcc
Confidence            4689999998653 33344567789999999999999975     2347999999875

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.44  E-value=1.2e-14  Score=79.15  Aligned_cols=51  Identities=27%  Similarity=0.716  Sum_probs=40.4

Q ss_pred             cCccccccccccccCCCCceEee-cCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         28 ESFLTCGTCLCMYDGGEHTPKLL-PCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        28 ~~~l~C~iC~~~~~~~~~~p~~l-~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ++...|+||++.|..++. .+.+ .|||.||..|+.+|+..      ...||+||+.+.
T Consensus         3 ed~~~C~ICl~~~~~~~~-~~~l~~C~H~Fh~~Ci~~Wl~~------~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEE-ARFLPRCGHGFHAECVDMWLGS------HSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSC-CEECSSSCCEECTTHHHHTTTT------CCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCE-EEEeCCCCCcccHHHHHHHHHh------CCcCCCCCCEeE
Confidence            457789999999964433 4455 59999999999999976      347999998653

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.7e-15  Score=81.05  Aligned_cols=46  Identities=41%  Similarity=0.985  Sum_probs=39.5

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceeeC
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITIP   87 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~   87 (129)
                      +.+.|+||++.|    .+|++++|||+||..|+.+         ....||.||+.+...
T Consensus         5 ~~l~C~IC~~~~----~~p~~lpCgH~fC~~Ci~~---------~~~~CP~Cr~~~~~~   50 (56)
T d1bora_           5 QFLRCQQCQAEA----KCPKLLPCLHTLCSGCLEA---------SGMQCPICQAPWPLG   50 (56)
T ss_dssp             CCSSCSSSCSSC----BCCSCSTTSCCSBTTTCSS---------SSSSCSSCCSSSSCC
T ss_pred             CCCCCcccCccc----CCCEEecCCCHHhHHHHHc---------CCCcCcCCCCcccCC
Confidence            368999999999    7999999999999999853         245899999998754

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.43  E-value=2e-14  Score=81.59  Aligned_cols=46  Identities=28%  Similarity=0.725  Sum_probs=37.9

Q ss_pred             cccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        31 l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      -.|+||++.|.   ..++.++|||+||..|+.+|+..      ...||.||..+.
T Consensus         6 d~C~IC~~~~~---~~~~~~~C~H~Fc~~Ci~~w~~~------~~~CP~CR~~i~   51 (68)
T d1chca_           6 ERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQ------NPTCPLCKVPVE   51 (68)
T ss_dssp             CCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHH------SCSTTTTCCCCC
T ss_pred             CCCccCCcCcc---CCcEEeCCCCcCcHHHHHHHHHh------CCcCCCCCcchH
Confidence            46999999993   23456799999999999999987      347999998764

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=6.7e-12  Score=77.63  Aligned_cols=56  Identities=25%  Similarity=0.469  Sum_probs=40.7

Q ss_pred             ccccccccccccC--------------CCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDG--------------GEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~--------------~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +..|+||++.|..              .+....+++|||.||..||..|+.... ......||+||..+..
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~-~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcC-cCCCCccccccchhcc
Confidence            4579999998742              112234678999999999999998632 1235689999987653

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.02  E-value=5.8e-11  Score=65.27  Aligned_cols=49  Identities=20%  Similarity=0.375  Sum_probs=38.9

Q ss_pred             CccccccccccccCCCCceEeecC-----CchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPC-----SHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~C-----gH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      +...|+||++.++    .+.+.+|     +|.|+..||.+|+...    +...||+||+.+.
T Consensus         5 d~~~C~IC~~~~~----~~~~~~c~c~~c~h~~H~~Cl~~W~~~~----~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELG----NERFRACGCTGELENVHRSCLSTWLTIS----RNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECS----CCCCCSCCCSSGGGSCCHHHHHHHHHHH----TCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCC----CceeEecccCCCCCEEcHHHHHHHHhhC----CCCCCcccCCeee
Confidence            4678999999884    4444544     5999999999999763    4568999999875

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.1e-10  Score=68.87  Aligned_cols=51  Identities=22%  Similarity=0.372  Sum_probs=38.5

Q ss_pred             ccccccccccccCCC--------------CceEeecCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDGGE--------------HTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~--------------~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      +-.|+||.+.++...              ..++.++|||.|+..||.+|+..      ...||+||+.+..
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~~~~   85 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------RQVCPLDNREWEF   85 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT------CSBCSSSCSBCCE
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH------CCcCCCCCCcccc
Confidence            345888887765311              13456789999999999999987      3479999998753

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.5e-10  Score=67.35  Aligned_cols=52  Identities=21%  Similarity=0.441  Sum_probs=37.6

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccC--CCCccccccCCc
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTR--ETGTLRCPICRE   82 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~--~~~~~~CP~Cr~   82 (129)
                      ...|+||++.+.. +..+..++|||.||..|+..|+..+..  ....+.||.|+-
T Consensus         5 ~~~C~IC~~~~~~-~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPV-EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBG-GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccC-CceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            5689999998731 123455689999999999999876422  224578998653

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0038  Score=33.94  Aligned_cols=49  Identities=27%  Similarity=0.455  Sum_probs=34.2

Q ss_pred             ccccccccccccCCCCceEeec--CCchhHHHhHHHHHHhccCCCCccccccCC
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLP--CSHTVCLHCLSRIAASQTRETGTLRCPICR   81 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~--CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr   81 (129)
                      .+.|.+|.+.+.+  ..-+.-|  =+|.||..|-...++.+.. +....||.-.
T Consensus         8 ~l~CtlC~erLEd--tHFVQCPsv~~HkFCFpCsr~sik~q~~-~~evyCPSG~   58 (80)
T d2cs3a1           8 PLCCTICHERLED--THFVQCPSVPSHKFCFPCSRESIKAQGA-TGEVYCPSGE   58 (80)
T ss_dssp             SCCCSSSCSCCSS--TTSEECSSCSSCEECHHHHHHHHHHHHS-SSCCCCTTSS
T ss_pred             ceeeeeehhhhcC--CceEeCCCCcCCceeccccHHHHHhcCC-CCcEECCCCC
Confidence            5889999999831  2223333  4899999999998887654 4456676543

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.40  E-value=0.092  Score=28.38  Aligned_cols=34  Identities=15%  Similarity=0.399  Sum_probs=24.3

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR   63 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~   63 (129)
                      .-.|.+|...|+...+.-.=-.||+.||..|...
T Consensus        13 ~~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~   46 (72)
T d1dvpa2          13 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK   46 (72)
T ss_dssp             CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred             CCccccCCCcccCccccccccccCCeeChhhhCC
Confidence            4569999999864333333446999999999743

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=0.059  Score=26.94  Aligned_cols=47  Identities=23%  Similarity=0.576  Sum_probs=30.0

Q ss_pred             ccccccccccCCCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcc
Q psy11857         32 TCGTCLCMYDGGEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQ   83 (129)
Q Consensus        32 ~C~iC~~~~~~~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~   83 (129)
                      .|.||...-+   ....++  .|...|...|+...+...+  ...+.||.|+..
T Consensus         2 ~C~vC~~~~~---~~~~i~Cd~C~~~~H~~C~~p~~~~~p--~~~W~C~~C~~~   50 (51)
T d1f62a_           2 RCKVCRKKGE---DDKLILCDECNKAFHLFCLRPALYEVP--DGEWQCPACQPA   50 (51)
T ss_dssp             CCTTTCCSSC---CSCCEECTTTCCEECHHHHCTTCCSCC--SSCCSCTTTSCC
T ss_pred             CCcCcCCCCC---CCCEEEcCCCCCCCCCCCCCCCCCcCC--CCCEECcCCcCc
Confidence            5788876542   222333  4888899999876443322  346889999753

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=87.04  E-value=0.009  Score=32.36  Aligned_cols=41  Identities=27%  Similarity=0.562  Sum_probs=27.3

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCCccee
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICREQIT   85 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~   85 (129)
                      ++.||.|...++     +..   ||.+|..|-..+.       ....||.|+..+.
T Consensus         2 ~~~CP~C~~eL~-----~~~---~~~~C~~C~~~~~-------~~a~CPdC~~~Le   42 (71)
T d2jnea1           2 ELHCPQCQHVLD-----QDN---GHARCRSCGEFIE-------MKALCPDCHQPLQ   42 (71)
T ss_dssp             CCBCSSSCSBEE-----EET---TEEEETTTCCEEE-------EEEECTTTCSBCE
T ss_pred             CCcCCCccCccc-----ccC---CCEehhhhhhhhe-------eEEeCCccccHHH
Confidence            478999998873     322   6777777754322       2457999987765

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.53  E-value=0.78  Score=25.42  Aligned_cols=52  Identities=21%  Similarity=0.363  Sum_probs=36.6

Q ss_pred             ccccccccccccC-CCCceEee--cCCchhHHHhHHHHHHhccCCCCccccccCCcceee
Q psy11857         30 FLTCGTCLCMYDG-GEHTPKLL--PCSHTVCLHCLSRIAASQTRETGTLRCPICREQITI   86 (129)
Q Consensus        30 ~l~C~iC~~~~~~-~~~~p~~l--~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~   86 (129)
                      .-.|.||.+..-. .+-++.+.  .|+--.|+.|..=-.+.     ....||.|+..+..
T Consensus        16 ~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke-----G~q~CpqCkt~Ykr   70 (93)
T d1weoa_          16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE-----GTQNCPQCKTRYKR   70 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT-----SCSSCTTTCCCCCC
T ss_pred             cchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhc-----cCccCcccCChhhh
Confidence            4679999997642 22344433  48888999999755554     56689999987763

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.01  E-value=0.2  Score=26.26  Aligned_cols=33  Identities=15%  Similarity=0.380  Sum_probs=23.4

Q ss_pred             ccccccccccccCCCCceEeecCCchhHHHhHH
Q psy11857         30 FLTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLS   62 (129)
Q Consensus        30 ~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~   62 (129)
                      ...|.+|...|+...+.--=-.||..||..|..
T Consensus         8 ~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~   40 (64)
T d1joca1           8 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA   40 (64)
T ss_dssp             CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred             CCcCcCcCCcccCCccccchhhhCCeecccccC
Confidence            457999999886333332333699999999964

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.59  E-value=0.23  Score=26.26  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=23.0

Q ss_pred             cccccccccccCCCCceEeecCCchhHHHhHHH
Q psy11857         31 LTCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSR   63 (129)
Q Consensus        31 l~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~   63 (129)
                      -.|.+|...|+...+.-.=-.||..||..|...
T Consensus         6 ~~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~   38 (67)
T d1vfya_           6 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN   38 (67)
T ss_dssp             SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred             cccccCCCcccCcccccccccCCCEecccccCC
Confidence            469999998853223322336999999999643

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.79  E-value=0.17  Score=22.16  Aligned_cols=12  Identities=17%  Similarity=0.476  Sum_probs=10.4

Q ss_pred             cccccccccccc
Q psy11857         30 FLTCGTCLCMYD   41 (129)
Q Consensus        30 ~l~C~iC~~~~~   41 (129)
                      .+.||||.+.|.
T Consensus         3 p~~cpic~qrfk   14 (32)
T d2epqa1           3 PYSCPVCGLRFK   14 (32)
T ss_dssp             SSEETTTTEECS
T ss_pred             CcccchHHHHhh
Confidence            578999999994

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.30  E-value=0.41  Score=25.90  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=21.5

Q ss_pred             CccccccccccccCCCCceEeecCCchhHHHh
Q psy11857         29 SFLTCGTCLCMYDGGEHTPKLLPCSHTVCLHC   60 (129)
Q Consensus        29 ~~l~C~iC~~~~~~~~~~p~~l~CgH~fC~~C   60 (129)
                      ...+|.+|...+.   -....-.||+.||...
T Consensus        24 kk~RC~~C~KKl~---l~~~~CrCg~~FC~~H   52 (74)
T d1wfpa_          24 TATRCLSCNKKVG---VTGFKCRCGSTFCGTH   52 (74)
T ss_dssp             CCCBCSSSCCBCT---TTCEECTTSCEECTTT
T ss_pred             CCCcChhcCCccC---CCceecCCCChhhhcc
Confidence            3678999998873   2334557999999865

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.22  E-value=0.16  Score=25.52  Aligned_cols=44  Identities=23%  Similarity=0.739  Sum_probs=26.3

Q ss_pred             ccccccccccCCCCceEeecCCchhHHHhHHHHHHhccCCCCccccccCC
Q psy11857         32 TCGTCLCMYDGGEHTPKLLPCSHTVCLHCLSRIAASQTRETGTLRCPICR   81 (129)
Q Consensus        32 ~C~iC~~~~~~~~~~p~~l~CgH~fC~~Cl~~~~~~~~~~~~~~~CP~Cr   81 (129)
                      .|.+|...|+...+.-.=-.||..||..|.....      .....|..|.
T Consensus         2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~------~~~RvC~~C~   45 (51)
T d1y02a2           2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG------NGPRLCLLCQ   45 (51)
T ss_dssp             CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----------CCEEHHHH
T ss_pred             CccccCCcccCCccCcccccCCcccCccccCCCC------CCCeECHhHh
Confidence            4788888885322333334799999999964321      1234676664