Psyllid ID: psy11864

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQ
Secondary Structure (PSIPRED)
cEEEEEEEEEEccccccccEEEEEccccccccEEEEEccccccccEEEcccEEEEEEEEccccccccEEEEEEEEEcccccccccccccEEEccccEEEEEEccEEEccccccEEcccccEEEccccEEEcccccccccccccEEEEEEcccccEEEEEEEEEEEEccccccccccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEccccccccEEEEEEcccccccccccEEccccccccEEEcccEEEEEEEEccccccccEEEEEEEEcccccccccccccEEEEEcccEEEEEcccEEEccccccccHHcccEEEccccEEEcccccccccccccEEEEEEEccccEEEEEEEEEEEccccccEccccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
valkfqsfeienhdqctydyveirdghapdspiigtycgyklppdikssgTKLMIKFvsdgsvqkpgfSAIFMKEfdecaledhgcehtcknilggyecsckigyelhsdgkicldacggilntpngtltspsfpdlyiknktciweivappqyrislnfthfdiegnnlfqssceydnltvfskigdsfksq
Flexible Loop (DISEMBL)
valkfqsfeienhdqCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKigdsfksq
Low Complexity Region (SEG)
VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQ
Disordered region (IsUnstruct)
*******FEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKI*******
Disordered Region (DISOPRED)
VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT************
Disordered Region (DISEMBL)
VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQ
Disordered Region (DISPRO)
VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKI*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSFKSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
P25723	1067	Dorsal-ventral patterning	no	N/A	0.979	0.177	0.554	1e-62
Q9Y6L7	1015	Tolloid-like protein 2 OS	yes	N/A	0.943	0.179	0.545	1e-56
Q9WVM6	1012	Tolloid-like protein 2 OS	yes	N/A	0.943	0.179	0.550	2e-55
Q8JI28	1007	Tolloid-like protein 1 OS	N/A	N/A	0.968	0.185	0.531	3e-55
P13497	986	Bone morphogenetic protei	no	N/A	0.943	0.184	0.545	1e-54
O43897	1013	Tolloid-like protein 1 OS	no	N/A	0.968	0.184	0.520	1e-54
P98063	991	Bone morphogenetic protei	no	N/A	0.943	0.183	0.545	1e-54
O57382	1019	Tolloid-like protein 2 OS	N/A	N/A	0.968	0.183	0.526	3e-54
Q62381	1013	Tolloid-like protein 1 OS	no	N/A	0.932	0.177	0.518	1e-53
P98070	707	Bone morphogenetic protei	N/A	N/A	0.943	0.257	0.540	3e-53

>sp|P25723|TLD_DROME Dorsal-ventral patterning protein tolloid OS=Drosophila melanogaster GN=tld PE=2 SV=2

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 106/191 (55%), Positives = 140/191 (73%), Gaps = 2/191 (1%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           VALKFQSFE+E HD C YD+VEIRDG+  DS +IG +CG KLPP+IK+   ++ I+FVSD
Sbjct: 517 VALKFQSFELEKHDGCAYDFVEIRDGNHSDSRLIGRFCGDKLPPNIKTRSNQMYIRFVSD 576

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
            SVQK GFSA  M + DEC   DHGC+H C N LG Y+C C+ GYEL ++GK C DACGG
Sbjct: 577 SSVQKLGFSAALMLDVDECKFTDHGCQHLCINTLGSYQCGCRAGYELQANGKTCEDACGG 636

Query: 121 ILNT--PNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYD 178
           +++    NG+L SPS+PD+Y  +K C+WE+VAPP + + LNF+HFD+EG     + C YD
Sbjct: 637 VVDATKSNGSLYSPSYPDVYPNSKQCVWEVVAPPNHAVFLNFSHFDLEGTRFHYTKCNYD 696

Query: 179 NLTVFSKIGDS 189
            L ++SK+ D+
Sbjct: 697 YLIIYSKMRDN 707

Required for normal dorsal development. TLD may interact physically with DPP-C protein.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|Q9Y6L7|TLL2_HUMAN Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 132/187 (70%), Gaps = 5/187 (2%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V L FQ+FEIE HD C YDY+E+RDG   +S +IG +CGY+ P D+KSS  +L +KFVSD
Sbjct: 502 VGLTFQAFEIERHDSCAYDYLEVRDGPTEESALIGHFCGYEKPEDVKSSSNRLWMKFVSD 561

Query: 61  GSVQKPGFSAIFMKEFDECALEDH-GCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           GS+ K GF+A F KE DEC+  DH GCEH C N LG Y+C+C  GYEL +D K+C  ACG
Sbjct: 562 GSINKAGFAANFFKEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELAADKKMCEVACG 621

Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
           G +   NGT+TSP +P  Y  NK C+W++VAP QYRISL F  F++EGN++    C+YD 
Sbjct: 622 GFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDV----CKYDF 677

Query: 180 LTVFSKI 186
           + V S +
Sbjct: 678 VEVRSGL 684

Protease which specifically processes pro-lysyl oxidase. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9WVM6|TLL2_MOUSE Tolloid-like protein 2 OS=Mus musculus GN=Tll2 PE=1 SV=1

 Score =  215 bits (547), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/187 (55%), Positives = 128/187 (68%), Gaps = 5/187 (2%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V L FQSFEIE HD C YDY+EIRDG   DS +IG +CGY+ P  +KSS  +L +KFVSD
Sbjct: 499 VGLTFQSFEIERHDSCAYDYLEIRDGPTEDSTLIGHFCGYEKPEAVKSSANRLWVKFVSD 558

Query: 61  GSVQKPGFSAIFMKEFDECALEDH-GCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           GS+ K GF+A F KE DEC+  DH GCE  C N LG Y C+C  GYEL +D K C  ACG
Sbjct: 559 GSINKAGFAANFFKEVDECSWPDHGGCEQRCVNTLGSYTCACDPGYELAADKKTCEVACG 618

Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
           G +   NGT+TSP +P  Y  NK C+W++VAP QYRISL F  F++EGN++    C+YD 
Sbjct: 619 GFITKLNGTITSPGWPKEYPTNKNCVWQVVAPVQYRISLQFEAFELEGNDV----CKYDF 674

Query: 180 LTVFSKI 186
           + V S +
Sbjct: 675 VEVRSGL 681

Protease which specifically processes pro-lysyl oxidase. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q8JI28|TLL1_XENLA Tolloid-like protein 1 OS=Xenopus laevis GN=tll1 PE=1 SV=1

 Score =  214 bits (545), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 133/192 (69%), Gaps = 5/192 (2%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V L FQ+FEIE HD C YDY+E+RDG + +SP+IG +CGY  P DI+S+   L +KFVSD
Sbjct: 495 VGLTFQAFEIERHDNCAYDYLEVRDGSSENSPLIGHFCGYDKPEDIRSTSNTLWMKFVSD 554

Query: 61  GSVQKPGFSAIFMKEFDECALEDH-GCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           G+V K GF+A F+KE DECA  D+ GCE  C N LG Y+CSC  GYEL  D K C  ACG
Sbjct: 555 GTVNKAGFAANFLKEEDECARPDNGGCEQRCVNTLGSYKCSCDPGYELAPDKKSCEAACG 614

Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
           G+L   NGT+T+P++P  Y  NK C+W++VAP QYRIS+ F +F++EGN +    C+YD 
Sbjct: 615 GLLTKLNGTITTPAWPKEYPPNKNCVWQVVAPSQYRISMKFDYFELEGNEV----CKYDY 670

Query: 180 LTVFSKIGDSFK 191
           + V S +    K
Sbjct: 671 VEVRSGLSSDSK 682

Protease which processes procollagen C-propeptides, such as chordin. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P13497|BMP1_HUMAN Bone morphogenetic protein 1 OS=Homo sapiens GN=BMP1 PE=1 SV=2

 Score =  212 bits (539), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 128/187 (68%), Gaps = 5/187 (2%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V L FQSFEIE HD C YDY+E+RDGH+  S +IG YCGY+ P DIKS+ ++L +KFVSD
Sbjct: 473 VGLTFQSFEIERHDSCAYDYLEVRDGHSESSTLIGRYCGYEKPDDIKSTSSRLWLKFVSD 532

Query: 61  GSVQKPGFSAIFMKEFDECALEDH-GCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           GS+ K GF+  F KE DEC+  +  GCE  C N LG Y+CSC  GYEL  D + C  ACG
Sbjct: 533 GSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACG 592

Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
           G L   NG++TSP +P  Y  NK CIW++VAP QYRISL F  F+ EGN++    C+YD 
Sbjct: 593 GFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDV----CKYDF 648

Query: 180 LTVFSKI 186
           + V S +
Sbjct: 649 VEVRSGL 655

Cleaves the C-terminal propeptides of procollagen I, II and III. Induces cartilage and bone formation. May participate in dorsoventral patterning during early development by cleaving chordin (CHRD).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 1

EC: 9

>sp|O43897|TLL1_HUMAN Tolloid-like protein 1 OS=Homo sapiens GN=TLL1 PE=1 SV=1

 Score =  212 bits (539), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/192 (52%), Positives = 131/192 (68%), Gaps = 5/192 (2%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V L FQSFEIE HD C YDY+E+RDG + +SP+IG +CGY  P DI+S+   L +KFVSD
Sbjct: 500 VGLTFQSFEIERHDNCAYDYLEVRDGTSENSPLIGRFCGYDKPEDIRSTSNTLWMKFVSD 559

Query: 61  GSVQKPGFSAIFMKEFDECALEDH-GCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           G+V K GF+A F KE DECA  D  GCE  C N LG Y+C+C+ GYEL  D + C  ACG
Sbjct: 560 GTVNKAGFAANFFKEEDECAKPDRGGCEQRCLNTLGSYQCACEPGYELGPDRRSCEAACG 619

Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
           G+L   NGT+T+P +P  Y  NK C+W++VAP QYRIS+ F  F++EGN +    C+YD 
Sbjct: 620 GLLTKLNGTITTPGWPKEYPPNKNCVWQVVAPTQYRISVKFEFFELEGNEV----CKYDY 675

Query: 180 LTVFSKIGDSFK 191
           + ++S +    K
Sbjct: 676 VEIWSGLSSESK 687

Protease which processes procollagen C-propeptides, such as chordin, pro-biglycan and pro-lysyl oxidase. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P98063|BMP1_MOUSE Bone morphogenetic protein 1 OS=Mus musculus GN=Bmp1 PE=1 SV=2

 Score =  212 bits (539), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/187 (54%), Positives = 128/187 (68%), Gaps = 5/187 (2%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V L FQSFEIE HD C YDY+E+RDGH+  S +IG YCGY+ P DIKS+ ++L +KFVSD
Sbjct: 478 VGLTFQSFEIERHDSCAYDYLEVRDGHSESSNLIGRYCGYEKPDDIKSTSSRLWLKFVSD 537

Query: 61  GSVQKPGFSAIFMKEFDECALEDH-GCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           GS+ K GF+  F KE DEC+  +  GCE  C N LG Y+CSC  GYEL  D + C  ACG
Sbjct: 538 GSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACG 597

Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
           G L   NG++TSP +P  Y  NK CIW++VAP QYRISL F  F+ EGN++    C+YD 
Sbjct: 598 GFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDV----CKYDF 653

Query: 180 LTVFSKI 186
           + V S +
Sbjct: 654 VEVRSGL 660

Cleaves the C-terminal propeptides of procollagen I, II and III. Induces cartilage and bone formation. May participate in dorsoventral patterning during early development by cleaving chordin (CHRD).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 1

EC: 9

>sp|O57382|TLL2_XENLA Tolloid-like protein 2 OS=Xenopus laevis GN=tll2 PE=2 SV=1

 Score =  211 bits (536), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 129/192 (67%), Gaps = 5/192 (2%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V L FQ+FEIE HD C YDY+E+RDG + D  +IG +CGY+ P DIKS+  KL IKF SD
Sbjct: 505 VGLSFQAFEIERHDNCAYDYLEVRDGFSEDHALIGRFCGYEKPEDIKSTSNKLWIKFASD 564

Query: 61  GSVQKPGFSAIFMKEFDECALEDH-GCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           GS+ K GFSA F KE DEC+  D+ GC   C N LG Y+C C+ G+EL +D K C  ACG
Sbjct: 565 GSINKAGFSANFFKEMDECSRPDNGGCSQRCVNTLGSYKCVCEPGFELTADKKSCEAACG 624

Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
           G +   NGT+TSP +P  Y  NK C+W++VAP QYRISL F  F++EGN++    C+YD 
Sbjct: 625 GFITQLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDV----CKYDY 680

Query: 180 LTVFSKIGDSFK 191
           L + S +    K
Sbjct: 681 LEIRSGLSSESK 692

Protease which specifically processes prolysyl oxidase and maybe also chordin. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis. In embryos, inhibits the development of dorsoanterior structures and ventralizes activin-induced dorsal mesoderm in animal caps.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q62381|TLL1_MOUSE Tolloid-like protein 1 OS=Mus musculus GN=Tll1 PE=1 SV=1

 Score =  208 bits (530), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/185 (51%), Positives = 129/185 (69%), Gaps = 5/185 (2%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V L FQ+FEIE HD C YD++E+RDG + +SP+IG +CGY  P DI+S+   L +KFVSD
Sbjct: 500 VGLTFQAFEIERHDSCAYDHLEVRDGASENSPLIGRFCGYDKPEDIRSTSNTLWMKFVSD 559

Query: 61  GSVQKPGFSAIFMKEFDECALEDH-GCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           G+V K GF+A F KE DECA  D  GCE  C N LG Y+C+C+ GYEL  D + C  ACG
Sbjct: 560 GTVNKAGFAANFFKEEDECAKPDRGGCEQRCLNTLGSYQCACEPGYELGPDRRSCEAACG 619

Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
           G+L   NGT+T+P +P  Y  NK C+W+++AP QYRIS+ F  F++EGN +    C+YD 
Sbjct: 620 GLLTKLNGTITTPGWPKEYPPNKNCVWQVIAPSQYRISVKFEFFELEGNEV----CKYDY 675

Query: 180 LTVFS 184
           + ++S
Sbjct: 676 VEIWS 680

Protease which processes procollagen C-propeptides, such as chordin, pro-biglycan and pro-lysyl oxidase. Required for the embryonic development, especially heart development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P98070|BMP1_XENLA Bone morphogenetic protein 1 OS=Xenopus laevis GN=bmp1 PE=1 SV=1

 Score =  207 bits (528), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 126/187 (67%), Gaps = 5/187 (2%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V + FQSFEIE HD C YDY+EIRDG +  SP++G +CGY  P DIKSS  +L IKFVSD
Sbjct: 436 VGISFQSFEIERHDSCAYDYLEIRDGSSETSPLVGRFCGYDKPDDIKSSTNQLWIKFVSD 495

Query: 61  GSVQKPGFSAIFMKEFDECALEDH-GCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           GS+ K GFS  + KE DEC+  ++ GCE  C N LG Y+C+C  GYEL  D K C  ACG
Sbjct: 496 GSINKAGFSLNYFKEVDECSRPNNGGCEQRCVNTLGSYKCACDPGYELGQDKKSCEAACG 555

Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
           G L   NG++ SP +P  Y  NK CIW++VAP QYRISL F  F+ EGN++    C+YD 
Sbjct: 556 GFLTKLNGSINSPGWPKEYPPNKNCIWQLVAPTQYRISLKFDQFETEGNDV----CKYDF 611

Query: 180 LTVFSKI 186
           + V S +
Sbjct: 612 VEVRSGL 618

Metalloprotease involved in pattern formation in gastrula and later differentiation of developing organs. Able to cleave chordin (chrd), suggesting that it may act in dorsoventral patterning during early development by regulating the chordin (chrd) activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
307169336	1051	Tolloid-like protein 2 [Camponotus flori	0.911	0.167	0.765	1e-84
332021857	1224	Tolloid-like protein 2 [Acromyrmex echin	0.911	0.143	0.755	2e-84
345495274	1135	PREDICTED: tolloid-like protein 2-like [	0.875	0.148	0.755	5e-84
307193271	1238	Tolloid-like protein 2 [Harpegnathos sal	0.880	0.137	0.734	2e-82
340722615	1233	PREDICTED: tolloid-like protein 2-like [	0.922	0.144	0.736	4e-82
350424355	1086	PREDICTED: tolloid-like protein 2-like [	0.922	0.163	0.736	7e-82
328787501	1232	PREDICTED: tolkin [Apis mellifera]	0.854	0.133	0.744	9e-82
383851625	1225	PREDICTED: tolloid-like protein 2-like [	0.891	0.140	0.744	1e-81
380022873	914	PREDICTED: LOW QUALITY PROTEIN: tolloid-	0.891	0.188	0.744	4e-81
242023390	914	conserved hypothetical protein [Pediculu	0.891	0.188	0.731	1e-80

>gi|307169336|gb|EFN62057.1| Tolloid-like protein 2 [Camponotus floridanus]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 144/188 (76%), Positives = 159/188 (84%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           VALKFQSFEIENHD C YDYVE+RDGH  DSP+IG YCGYK+PPDIKS G KL++KFVSD
Sbjct: 525 VALKFQSFEIENHDNCVYDYVEVRDGHDNDSPLIGVYCGYKIPPDIKSVGNKLLVKFVSD 584

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
           GSVQK GFSA FMKEFDEC L DHGCEH C N LGGYECSCKIGYELHSDGK C DACGG
Sbjct: 585 GSVQKAGFSATFMKEFDECILTDHGCEHNCTNTLGGYECSCKIGYELHSDGKHCEDACGG 644

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
             N  NGT+TSPSFP+ Y  NK C+WEIVAP QYRI+LNFTHFD+EGNN++Q  CEYD++
Sbjct: 645 FFNGSNGTITSPSFPEAYPGNKNCVWEIVAPSQYRITLNFTHFDLEGNNVYQEECEYDSV 704

Query: 181 TVFSKIGD 188
            V SK+GD
Sbjct: 705 EVASKLGD 712

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021857|gb|EGI62193.1| Tolloid-like protein 2 [Acromyrmex echinatior]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 142/188 (75%), Positives = 161/188 (85%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           VALKFQSFEIENHD C YDYVE+RDGH  DSP+IG YCGYK+PPDIKS+G KL++KFVSD
Sbjct: 697 VALKFQSFEIENHDNCVYDYVEVRDGHNNDSPLIGVYCGYKIPPDIKSTGNKLLVKFVSD 756

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
           GSVQK GFSA FMKEFDEC L DHGCEH C N LGGYECSCKIG+ELHSDGK C DACGG
Sbjct: 757 GSVQKAGFSATFMKEFDECVLTDHGCEHDCINTLGGYECSCKIGFELHSDGKHCEDACGG 816

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
             +  NGT+TSPSFP+ Y  NK C+WEI+APPQYRI+LNFTHFD+EGNN++Q  CEYD++
Sbjct: 817 FFDDSNGTITSPSFPETYPGNKNCVWEIIAPPQYRITLNFTHFDLEGNNVYQEECEYDSV 876

Query: 181 TVFSKIGD 188
            V SK+GD
Sbjct: 877 EVASKLGD 884

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495274|ref|XP_003427473.1| PREDICTED: tolloid-like protein 2-like [Nasonia vitripennis]

 Score =  315 bits (808), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 142/188 (75%), Positives = 163/188 (86%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           VALKFQSFEIE+HD C YD+VE+RDGH+ DSP+IG YCGYKLPPDI+S+G KL++KFVSD
Sbjct: 599 VALKFQSFEIESHDNCVYDFVEVRDGHSADSPLIGLYCGYKLPPDIRSTGNKLLLKFVSD 658

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
            SVQK GFSA FMKEFDECAL DHGCEH C N LGG+ECSCKIGYELHSDGK C DACGG
Sbjct: 659 SSVQKAGFSATFMKEFDECALTDHGCEHDCINTLGGFECSCKIGYELHSDGKHCEDACGG 718

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
           + N  NGT+TSPSFP+ Y  NK C+WEIVAPPQYRI+LNFTHFD+EGNN+++  CEYD+L
Sbjct: 719 VFNASNGTITSPSFPETYPGNKHCVWEIVAPPQYRITLNFTHFDLEGNNVYEQPCEYDSL 778

Query: 181 TVFSKIGD 188
            V SK+GD
Sbjct: 779 EVSSKLGD 786

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193271|gb|EFN76162.1| Tolloid-like protein 2 [Harpegnathos saltator]

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 138/188 (73%), Positives = 159/188 (84%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           VALKFQSFEIENHD C YDYVE+RDGH  DS +IG YCGYK+PPDIKS+G +L +KFVSD
Sbjct: 704 VALKFQSFEIENHDNCVYDYVEVRDGHNEDSALIGVYCGYKIPPDIKSTGNQLFVKFVSD 763

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
           GSVQK GFSA FMKE+DEC + DHGCEH C N LGGYECSCK+G+ELHSDGK C DACGG
Sbjct: 764 GSVQKAGFSATFMKEYDECKMTDHGCEHDCINTLGGYECSCKVGFELHSDGKHCEDACGG 823

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
             +  NGT+TSPSFP+ Y  NK CIWEI+APPQYRI+LNFTHFD+EGNN++Q  CEYD++
Sbjct: 824 FFDDNNGTITSPSFPESYPGNKNCIWEIIAPPQYRITLNFTHFDLEGNNMYQEECEYDSV 883

Query: 181 TVFSKIGD 188
            V SK+GD
Sbjct: 884 EVVSKLGD 891

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722615|ref|XP_003399699.1| PREDICTED: tolloid-like protein 2-like [Bombus terrestris]

 Score =  309 bits (791), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 140/190 (73%), Positives = 157/190 (82%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           VALKFQSFEIENHD C YDYVE+RDGH  DSP+IG YCGYK+PPDIKS+G KL++KFVSD
Sbjct: 704 VALKFQSFEIENHDNCVYDYVEVRDGHNADSPLIGVYCGYKIPPDIKSTGNKLLVKFVSD 763

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
           GSVQK GFSA FMKEFDEC L +HGCEH C N LGG+ECSCK GYELHSDGK C DACGG
Sbjct: 764 GSVQKAGFSATFMKEFDECVLIEHGCEHNCINTLGGFECSCKPGYELHSDGKHCEDACGG 823

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
           +    NGT+TSPSFP  Y  NK C+WEI+APPQYRI+LNFTHFD+EGNN  Q  CEYD++
Sbjct: 824 VFEDSNGTITSPSFPVTYPGNKDCVWEIIAPPQYRITLNFTHFDLEGNNARQQDCEYDSV 883

Query: 181 TVFSKIGDSF 190
            V SK+GD  
Sbjct: 884 EVSSKLGDDL 893

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424355|ref|XP_003493768.1| PREDICTED: tolloid-like protein 2-like [Bombus impatiens]

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 140/190 (73%), Positives = 157/190 (82%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           VALKFQSFEIENHD C YDYVE+RDGH  DSP+IG YCGYK+PPDIKS+G KL++KFVSD
Sbjct: 557 VALKFQSFEIENHDNCVYDYVEVRDGHNADSPLIGVYCGYKIPPDIKSTGNKLLVKFVSD 616

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
           GSVQK GFSA FMKEFDEC L +HGCEH C N LGG+ECSCK GYELHSDGK C DACGG
Sbjct: 617 GSVQKAGFSATFMKEFDECVLIEHGCEHNCINTLGGFECSCKPGYELHSDGKHCEDACGG 676

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
           +    NGT+TSPSFP  Y  NK C+WEI+APPQYRI+LNFTHFD+EGNN  Q  CEYD++
Sbjct: 677 VFEDSNGTITSPSFPVTYPGNKDCVWEIIAPPQYRITLNFTHFDLEGNNARQQDCEYDSV 736

Query: 181 TVFSKIGDSF 190
            V SK+GD  
Sbjct: 737 EVSSKLGDDL 746

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787501|ref|XP_393866.3| PREDICTED: tolkin [Apis mellifera]

 Score =  308 bits (788), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 140/188 (74%), Positives = 156/188 (82%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           VALKFQSFEIENHD C YDYVE+RDGH  DSP+IG YCGYK+PPDIKS+G KL++KFVSD
Sbjct: 696 VALKFQSFEIENHDNCVYDYVEVRDGHNADSPLIGVYCGYKIPPDIKSTGNKLLVKFVSD 755

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
           GSVQK GFSA FMKEFDEC L DHGCEH C N LGG+ECSCK GYELHSDGK C DACGG
Sbjct: 756 GSVQKAGFSATFMKEFDECVLIDHGCEHNCINTLGGFECSCKPGYELHSDGKHCEDACGG 815

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
           +    NGT+TSPSFP  Y  NK C+WEI+APPQYRI+LNFTHFD+EG N  Q  CEYD++
Sbjct: 816 VFEDSNGTITSPSFPVTYPGNKDCVWEIIAPPQYRITLNFTHFDLEGTNARQQECEYDSV 875

Query: 181 TVFSKIGD 188
            V SK+GD
Sbjct: 876 EVSSKLGD 883

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851625|ref|XP_003701332.1| PREDICTED: tolloid-like protein 2-like [Megachile rotundata]

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 140/188 (74%), Positives = 156/188 (82%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           VALKFQSFEIENHD C YDYVEIRDGH  DSP+IG YCGYK+PPDIKS+G KL++KFVSD
Sbjct: 696 VALKFQSFEIENHDNCVYDYVEIRDGHNADSPLIGVYCGYKIPPDIKSTGNKLLVKFVSD 755

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
           GSVQK GFSA FMKEFDEC L +HGCEH C N LGG+ECSC  GYELHSDGK C DACGG
Sbjct: 756 GSVQKAGFSATFMKEFDECVLIEHGCEHNCINTLGGFECSCNPGYELHSDGKHCEDACGG 815

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
           +    NGT+TSPSFP  Y  NK C+WEI+APPQYRI+LNFTHFD+EGNN  Q  CEYD++
Sbjct: 816 VFEDSNGTITSPSFPVTYPGNKDCVWEIIAPPQYRITLNFTHFDLEGNNARQQECEYDSV 875

Query: 181 TVFSKIGD 188
            V SK+GD
Sbjct: 876 EVSSKLGD 883

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022873|ref|XP_003695260.1| PREDICTED: LOW QUALITY PROTEIN: tolloid-like protein 2-like [Apis florea]

 Score =  305 bits (782), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 140/188 (74%), Positives = 156/188 (82%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           VALKFQSFEIENHD C YDYVE+RDGH  DSP+IG YCGYK+PPDIKS+G KL++KFVSD
Sbjct: 385 VALKFQSFEIENHDNCVYDYVEVRDGHNADSPLIGVYCGYKIPPDIKSTGNKLLVKFVSD 444

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
           GSVQK GFSA FMKEFDEC L DHGCEH C N LGG+ECSCK GYELHSDGK C DACGG
Sbjct: 445 GSVQKAGFSATFMKEFDECVLIDHGCEHNCINTLGGFECSCKPGYELHSDGKHCEDACGG 504

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
           +    NGT+TSPSFP  Y  NK C+WEI+APPQYRI+LNFTHFD+EG N  Q  CEYD++
Sbjct: 505 VFEDSNGTITSPSFPVTYPGNKDCVWEIIAPPQYRITLNFTHFDLEGTNARQQECEYDSV 564

Query: 181 TVFSKIGD 188
            V SK+GD
Sbjct: 565 EVSSKLGD 572

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023390|ref|XP_002432117.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517491|gb|EEB19379.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 136/186 (73%), Positives = 156/186 (83%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           VALKFQSFE+ENHD C YDYVE+RDGH PDSP++GTYCGYKLPPD++SS  KL IKFVSD
Sbjct: 390 VALKFQSFEVENHDNCVYDYVEVRDGHLPDSPLLGTYCGYKLPPDVRSSSNKLQIKFVSD 449

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
            +VQK GFSA FM EFDEC   DHGCEH C N LG YEC+CKIGYELHSDGK C DACGG
Sbjct: 450 STVQKAGFSASFMVEFDECKTTDHGCEHECVNTLGTYECACKIGYELHSDGKHCEDACGG 509

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
           I  T NGT+TSPSFP++Y  +K CIWEI+APPQY+I+LNFTHFD+EGNN++Q  CEYD +
Sbjct: 510 IFETSNGTITSPSFPEIYPSDKKCIWEIIAPPQYKITLNFTHFDLEGNNIYQQECEYDKV 569

Query: 181 TVFSKI 186
            V SK+
Sbjct: 570 EVHSKL 575

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
FB|FBgn0004885	1464	tok "tolkin" [Drosophila melan	0.979	0.129	0.677	8.9e-73
FB|FBgn0003719	1067	tld "tolloid" [Drosophila mela	0.979	0.177	0.554	7.8e-60
UNIPROTKB|Q9Y6L7	1015	TLL2 "Tolloid-like protein 2"	0.968	0.184	0.536	3.5e-54
UNIPROTKB|F1MF35	893	TLL2 "Uncharacterized protein"	0.932	0.201	0.551	1.7e-53
UNIPROTKB|Q8JI28	1007	tll1 "Tolloid-like protein 1"	0.968	0.185	0.531	4.1e-53
MGI|MGI:1346044	1012	Tll2 "tolloid-like 2" [Mus mus	0.968	0.184	0.541	4.2e-53
UNIPROTKB|F1SBG0	894	TLL2 "Uncharacterized protein"	0.932	0.201	0.545	8e-53
UNIPROTKB|F1PGC4	858	BMP1 "Uncharacterized protein"	0.958	0.215	0.544	1.3e-52
UNIPROTKB|F1PE27	567	TLL2 "Uncharacterized protein"	0.880	0.299	0.561	1.3e-52
UNIPROTKB|O43897	1013	TLL1 "Tolloid-like protein 1"	0.968	0.184	0.520	1.5e-52

FB|FBgn0004885 tok "tolkin" [Drosophila melanogaster (taxid:7227)]

 Score = 746 (267.7 bits), Expect = 8.9e-73, P = 8.9e-73
 Identities = 128/189 (67%), Positives = 156/189 (82%)

Query:     1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
             VALKFQSFE+ENHD C YDYVE+RDG   D+P+IG +CGYK PP++KSSG  + +KFVSD
Sbjct:   880 VALKFQSFEVENHDSCVYDYVEVRDGPGQDAPLIGVFCGYKPPPNMKSSGNSMYVKFVSD 939

Query:    61 GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
              SVQK GFSA+FMKE DEC  ++HGCEH C N LGGYECSC+IG+ELHSD K C DACGG
Sbjct:   940 TSVQKAGFSAVFMKEVDECETQNHGCEHECINTLGGYECSCRIGFELHSDKKHCEDACGG 999

Query:   121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
             ++  PNGT+TSPSFP++Y   K CIWEIVAPP++RISLNFTHFD+EG    QS C YD++
Sbjct:  1000 VIEYPNGTITSPSFPEMYPLLKECIWEIVAPPKHRISLNFTHFDLEGTAHQQSDCGYDSV 1059

Query:   181 TVFSKIGDS 189
             TV+SK+G++
Sbjct:  1060 TVYSKLGEN 1068

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0007415 "defasciculation of motor neuron axon" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IDA

GO:0016485 "protein processing" evidence=IDA

GO:0007411 "axon guidance" evidence=IMP

FB|FBgn0003719 tld "tolloid" [Drosophila melanogaster (taxid:7227)]

 Score = 621 (223.7 bits), Expect = 7.8e-60, P = 7.8e-60
 Identities = 106/191 (55%), Positives = 140/191 (73%)

Query:     1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
             VALKFQSFE+E HD C YD+VEIRDG+  DS +IG +CG KLPP+IK+   ++ I+FVSD
Sbjct:   517 VALKFQSFELEKHDGCAYDFVEIRDGNHSDSRLIGRFCGDKLPPNIKTRSNQMYIRFVSD 576

Query:    61 GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
              SVQK GFSA  M + DEC   DHGC+H C N LG Y+C C+ GYEL ++GK C DACGG
Sbjct:   577 SSVQKLGFSAALMLDVDECKFTDHGCQHLCINTLGSYQCGCRAGYELQANGKTCEDACGG 636

Query:   121 ILNTP--NGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYD 178
             +++    NG+L SPS+PD+Y  +K C+WE+VAPP + + LNF+HFD+EG     + C YD
Sbjct:   637 VVDATKSNGSLYSPSYPDVYPNSKQCVWEVVAPPNHAVFLNFSHFDLEGTRFHYTKCNYD 696

Query:   179 NLTVFSKIGDS 189
              L ++SK+ D+
Sbjct:   697 YLIIYSKMRDN 707

GO:0008293 "torso signaling pathway" evidence=IGI

GO:0007362 "terminal region determination" evidence=IGI

GO:0005576 "extracellular region" evidence=NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0009880 "embryonic pattern specification" evidence=TAS

GO:0004222 "metalloendopeptidase activity" evidence=ISS;NAS

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=NAS

GO:0030513 "positive regulation of BMP signaling pathway" evidence=TAS

GO:0007378 "amnioserosa formation" evidence=NAS

GO:0017015 "regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0007313 "maternal specification of dorsal/ventral axis, oocyte, soma encoded" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IDA

GO:0016485 "protein processing" evidence=IDA

UNIPROTKB|Q9Y6L7 TLL2 "Tolloid-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 568 (205.0 bits), Expect = 3.5e-54, P = 3.5e-54
 Identities = 103/192 (53%), Positives = 133/192 (69%)

Query:     1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
             V L FQ+FEIE HD C YDY+E+RDG   +S +IG +CGY+ P D+KSS  +L +KFVSD
Sbjct:   502 VGLTFQAFEIERHDSCAYDYLEVRDGPTEESALIGHFCGYEKPEDVKSSSNRLWMKFVSD 561

Query:    61 GSVQKPGFSAIFMKEFDECALEDHG-CEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
             GS+ K GF+A F KE DEC+  DHG CEH C N LG Y+C+C  GYEL +D K+C  ACG
Sbjct:   562 GSINKAGFAANFFKEVDECSWPDHGGCEHRCVNTLGSYKCACDPGYELAADKKMCEVACG 621

Query:   120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
             G +   NGT+TSP +P  Y  NK C+W++VAP QYRISL F  F++EGN++    C+YD 
Sbjct:   622 GFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDV----CKYDF 677

Query:   180 LTVFSKIGDSFK 191
             + V S +    K
Sbjct:   678 VEVRSGLSPDAK 689

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|F1MF35 TLL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 559 (201.8 bits), Expect = 1.7e-53, P = 1.7e-53
 Identities = 102/185 (55%), Positives = 128/185 (69%)

Query:     1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
             V L FQ+FEIE HD C YDY+EIRDG   DS +IG +CGY+ P D+KSS  ++ +KFVSD
Sbjct:   380 VGLTFQAFEIERHDSCAYDYLEIRDGFTEDSALIGHFCGYEKPDDVKSSSNRMWMKFVSD 439

Query:    61 GSVQKPGFSAIFMKEFDECALEDHG-CEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
             GS+ K GF+A F KE DEC+  DHG CE  C N LG Y+C C  GYEL +D K C  ACG
Sbjct:   440 GSINKAGFAANFFKEVDECSWPDHGGCEQRCMNTLGSYKCMCDPGYELAADKKACEVACG 499

Query:   120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
             G +   NGT+TSP +P  Y  NK C+W++VAP QYRISL F  F++EGN++    C+YD 
Sbjct:   500 GFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDV----CKYDF 555

Query:   180 LTVFS 184
             + V S
Sbjct:   556 VEVRS 560

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|Q8JI28 tll1 "Tolloid-like protein 1" [Xenopus laevis (taxid:8355)]

 Score = 558 (201.5 bits), Expect = 4.1e-53, P = 4.1e-53
 Identities = 102/192 (53%), Positives = 133/192 (69%)

Query:     1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
             V L FQ+FEIE HD C YDY+E+RDG + +SP+IG +CGY  P DI+S+   L +KFVSD
Sbjct:   495 VGLTFQAFEIERHDNCAYDYLEVRDGSSENSPLIGHFCGYDKPEDIRSTSNTLWMKFVSD 554

Query:    61 GSVQKPGFSAIFMKEFDECALEDHG-CEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
             G+V K GF+A F+KE DECA  D+G CE  C N LG Y+CSC  GYEL  D K C  ACG
Sbjct:   555 GTVNKAGFAANFLKEEDECARPDNGGCEQRCVNTLGSYKCSCDPGYELAPDKKSCEAACG 614

Query:   120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
             G+L   NGT+T+P++P  Y  NK C+W++VAP QYRIS+ F +F++EGN +    C+YD 
Sbjct:   615 GLLTKLNGTITTPAWPKEYPPNKNCVWQVVAPSQYRISMKFDYFELEGNEV----CKYDY 670

Query:   180 LTVFSKIGDSFK 191
             + V S +    K
Sbjct:   671 VEVRSGLSSDSK 682

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1346044 Tll2 "tolloid-like 2" [Mus musculus (taxid:10090)]

 Score = 558 (201.5 bits), Expect = 4.2e-53, P = 4.2e-53
 Identities = 104/192 (54%), Positives = 129/192 (67%)

Query:     1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
             V L FQSFEIE HD C YDY+EIRDG   DS +IG +CGY+ P  +KSS  +L +KFVSD
Sbjct:   499 VGLTFQSFEIERHDSCAYDYLEIRDGPTEDSTLIGHFCGYEKPEAVKSSANRLWVKFVSD 558

Query:    61 GSVQKPGFSAIFMKEFDECALEDHG-CEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
             GS+ K GF+A F KE DEC+  DHG CE  C N LG Y C+C  GYEL +D K C  ACG
Sbjct:   559 GSINKAGFAANFFKEVDECSWPDHGGCEQRCVNTLGSYTCACDPGYELAADKKTCEVACG 618

Query:   120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
             G +   NGT+TSP +P  Y  NK C+W++VAP QYRISL F  F++EGN++    C+YD 
Sbjct:   619 GFITKLNGTITSPGWPKEYPTNKNCVWQVVAPVQYRISLQFEAFELEGNDV----CKYDF 674

Query:   180 LTVFSKIGDSFK 191
             + V S +    K
Sbjct:   675 VEVRSGLSPDAK 686

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1SBG0 TLL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 553 (199.7 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 101/185 (54%), Positives = 128/185 (69%)

Query:     1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
             V L FQ+FEIE HD C YDY+EIRDG   +S +IG +CGY+ P D+KSS  ++ +KFVSD
Sbjct:   381 VGLSFQAFEIERHDSCAYDYLEIRDGPTEESALIGHFCGYEKPEDVKSSSNRMWMKFVSD 440

Query:    61 GSVQKPGFSAIFMKEFDECALEDHG-CEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
             GS+ K GF+A F KE DEC+  DHG CE  C N LG Y+C C  GYEL +D K C  ACG
Sbjct:   441 GSINKAGFAANFFKEVDECSWPDHGGCEQRCVNTLGSYKCVCDPGYELAADKKACEVACG 500

Query:   120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
             G +   NGT+TSP +P  Y  NK C+W++VAP QYRISL F  F++EGN++    C+YD 
Sbjct:   501 GFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDV----CKYDF 556

Query:   180 LTVFS 184
             + V S
Sbjct:   557 VEVRS 561

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|F1PGC4 BMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 550 (198.7 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 104/191 (54%), Positives = 130/191 (68%)

Query:     1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
             V L FQSFEIE HD C YDY+E+RDGH+  S +IG YCGY+ P DIKS+ ++L +KFVSD
Sbjct:   345 VGLTFQSFEIERHDSCAYDYLEVRDGHSETSTLIGRYCGYEKPDDIKSTSSRLWLKFVSD 404

Query:    61 GSVQKPGFSAIFMKEFDECALEDHG-CEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
             GS+ K GF+  F KE DEC+  + G CE  C N LG Y+CSC  GYEL  D + C  ACG
Sbjct:   405 GSINKAGFAVNFFKEVDECSRPNRGGCEQRCLNTLGSYKCSCDPGYELAPDKRRCEAACG 464

Query:   120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
             G L   NG++TSP +P  Y  NK CIW++VAP QYRISL F  F+ EGN++    C+YD 
Sbjct:   465 GFLTKLNGSITSPGWPKEYPPNKNCIWQLVAPTQYRISLQFDFFETEGNDV----CKYDF 520

Query:   180 LTVFSKI-GDS 189
             + V S +  DS
Sbjct:   521 VEVRSGLTADS 531

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|F1PE27 TLL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 96/171 (56%), Positives = 122/171 (71%)

Query:     1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
             V L FQ+FEIE HD C YDY+EIRDG   +S +IG +CGY+ P D+KSS  ++ +KFVSD
Sbjct:   375 VGLTFQAFEIERHDSCAYDYLEIRDGPTEESALIGHFCGYEKPEDVKSSSNRMWMKFVSD 434

Query:    61 GSVQKPGFSAIFMKEFDECALEDHG-CEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
             GS+ K GF+A F KE DEC+  DHG CE  C N LG Y+C+C  GYEL +D K C  ACG
Sbjct:   435 GSINKAGFAANFFKEVDECSWPDHGGCEQRCVNTLGSYKCACDPGYELAADKKTCEVACG 494

Query:   120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNL 170
             G +   NGT+TSP +P  Y  NK C+W++VAP QYRISL F  F++EGN++
Sbjct:   495 GFITKLNGTITSPGWPKEYPTNKNCVWQVVAPAQYRISLQFEVFELEGNDV 545

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|O43897 TLL1 "Tolloid-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 553 (199.7 bits), Expect = 1.5e-52, P = 1.5e-52
 Identities = 100/192 (52%), Positives = 131/192 (68%)

Query:     1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
             V L FQSFEIE HD C YDY+E+RDG + +SP+IG +CGY  P DI+S+   L +KFVSD
Sbjct:   500 VGLTFQSFEIERHDNCAYDYLEVRDGTSENSPLIGRFCGYDKPEDIRSTSNTLWMKFVSD 559

Query:    61 GSVQKPGFSAIFMKEFDECALEDHG-CEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
             G+V K GF+A F KE DECA  D G CE  C N LG Y+C+C+ GYEL  D + C  ACG
Sbjct:   560 GTVNKAGFAANFFKEEDECAKPDRGGCEQRCLNTLGSYQCACEPGYELGPDRRSCEAACG 619

Query:   120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
             G+L   NGT+T+P +P  Y  NK C+W++VAP QYRIS+ F  F++EGN +    C+YD 
Sbjct:   620 GLLTKLNGTITTPGWPKEYPPNKNCVWQVVAPTQYRISVKFEFFELEGNEV----CKYDY 675

Query:   180 LTVFSKIGDSFK 191
             + ++S +    K
Sbjct:   676 VEIWSGLSSESK 687

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0001501 "skeletal system development" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0030198 "extracellular matrix organization" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P98069	BMPH_STRPU	3, ., 4, ., 2, 4, ., -	0.6260	0.5906	0.1784	yes	N/A
Q9WVM6	TLL2_MOUSE	3, ., 4, ., 2, 4, ., -	0.5508	0.9430	0.1798	yes	N/A
Q9Y6L7	TLL2_HUMAN	3, ., 4, ., 2, 4, ., -	0.5454	0.9430	0.1793	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	193
pfam00431	110	pfam00431, CUB, CUB domain	2e-27
cd00041	113	cd00041, CUB, CUB domain; extracellular domain; pr	1e-25
smart00042	102	smart00042, CUB, Domain first found in C1r, C1s, u	2e-24
cd00041	113	cd00041, CUB, CUB domain; extracellular domain; pr	5e-19
pfam00431	110	pfam00431, CUB, CUB domain	6e-18
smart00042	102	smart00042, CUB, Domain first found in C1r, C1s, u	9e-17
cd01475	224	cd01475, vWA_Matrilin, VWA_Matrilin: In cartilagin	5e-06
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	4e-05
pfam07645	42	pfam07645, EGF_CA, Calcium-binding EGF domain	8e-05
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	3e-04
pfam12662	24	pfam12662, cEGF, Complement Clr-like EGF-like	0.001
pfam12947	36	pfam12947, EGF_3, EGF domain	0.002

>gnl|CDD|215916 pfam00431, CUB, CUB domain

 Score = 99.7 bits (249), Expect = 2e-27
 Identities = 37/72 (51%), Positives = 52/72 (72%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           ++L FQ F++E+HD+C YDYVEIRDG    SP++G +CG   P DI+S+  ++ IKFVSD
Sbjct: 39  ISLTFQDFDLEDHDECGYDYVEIRDGLPSSSPLLGRFCGSGPPEDIRSTSNQMTIKFVSD 98

Query: 61  GSVQKPGFSAIF 72
            S+ K GF A +
Sbjct: 99  SSISKRGFKATY 110

Length = 110

>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

 Score = 95.2 bits (237), Expect = 1e-25
 Identities = 33/72 (45%), Positives = 47/72 (65%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           + L F+ F++E+   C+YDY+EI DG +  SP++G +CG  LPP I SSG  L ++F SD
Sbjct: 40  IRLTFEDFDLESSPNCSYDYLEIYDGPSTSSPLLGRFCGSTLPPPIISSGNSLTVRFRSD 99

Query: 61  GSVQKPGFSAIF 72
            SV   GF A +
Sbjct: 100 SSVTGRGFKATY 111

Length = 113

>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

 Score = 91.7 bits (228), Expect = 2e-24
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSS-GTKLMIKFVS 59
           + L+F  F++E+ D C YDYVEI DG +  SP++G +CG + PP + SS    L + FVS
Sbjct: 30  IELQFTDFDLESSDNCEYDYVEIYDGPSASSPLLGRFCGSEAPPPVISSSSNSLTLTFVS 89

Query: 60  DGSVQKPGFSAIF 72
           D SVQK GFSA +
Sbjct: 90  DSSVQKRGFSARY 102

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain. Length = 102

>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

 Score = 77.8 bits (192), Expect = 5e-19
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 118 CGGILNTP-NGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCE 176
           CGG L    +GT++SP++P+ Y  N  C+W I APP YRI L F  FD+E +     +C 
Sbjct: 1   CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSP----NCS 56

Query: 177 YDNLTVFSKIGDSFKSQ 193
           YD L ++   G S  S 
Sbjct: 57  YDYLEIYD--GPSTSSP 71

Length = 113

>gnl|CDD|215916 pfam00431, CUB, CUB domain

 Score = 75.0 bits (185), Expect = 6e-18
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 177
           CGG+L   +G++TSP++P+ Y  NK C+W I APP YRISL F  FD+E        C Y
Sbjct: 1   CGGVLTESSGSITSPNYPNSYPPNKDCVWTIRAPPGYRISLTFQDFDLED----HDECGY 56

Query: 178 DNLTVFSKIGDSFK 191
           D + +   +  S  
Sbjct: 57  DYVEIRDGLPSSSP 70

Length = 110

>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

 Score = 71.7 bits (176), Expect = 9e-17
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKI 186
           GT+TSP++P  Y  N  C+W I APP YRI L FT FD+E ++    +CEYD + ++   
Sbjct: 1   GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSD----NCEYDYVEIYDGP 56

Query: 187 GDSFKS 192
             S   
Sbjct: 57  SASSPL 62

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain. Length = 102

>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGK 112
           D CA   H C+  C +  G Y C+C  GY L  D K
Sbjct: 188 DLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. Length = 224

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 77  DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 114
           DECA   + C++  TC N +G Y C C  GY    DG+ C
Sbjct: 3   DECA-SGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38

Length = 39

>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain

 Score = 38.5 bits (90), Expect = 8e-05
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 76  FDECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKIC 114
            DECA   H C     C N +G +EC C  GYE + DG  C
Sbjct: 2   VDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTNC 42

Length = 42

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 77  DECALEDHGCEH--TCKNILGGYECSCKIGYELHS 109
           DECA   + C++  TC N +G Y CSC  GY   +
Sbjct: 3   DECA-SGNPCQNGGTCVNTVGSYRCSCPPGYTGRN 36

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|221695 pfam12662, cEGF, Complement Clr-like EGF-like

 Score = 34.4 bits (80), Expect = 0.001
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 96  GYECSCKIGYELHSDGKICLD 116
            Y CSC  GY+L  DG+ C D
Sbjct: 1   SYTCSCPPGYQLSGDGRTCED 21

cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteristic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue. Length = 24

>gnl|CDD|205157 pfam12947, EGF_3, EGF domain

 Score = 34.4 bits (80), Expect = 0.002
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)

Query: 79  CALEDHGC-EH-TCKNILGGYECSCKIGYELHSDGKIC 114
           CA  + GC  + TC N  G + C+CK GY    DG  C
Sbjct: 1   CAENNGGCHPNATCTNTGGSFTCTCKSGYTG--DGVTC 36

This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein. Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
PF00431	110	CUB: CUB domain CUB domain entry Spermadhesins fam	99.75
cd00041	113	CUB CUB domain; extracellular domain; present in p	99.74
smart00042	102	CUB Domain first found in C1r, C1s, uEGF, and bone	99.71
KOG4586|consensus	156		99.64
PF00431	110	CUB: CUB domain CUB domain entry Spermadhesins fam	99.54
cd00041	113	CUB CUB domain; extracellular domain; present in p	99.51
smart00042	102	CUB Domain first found in C1r, C1s, uEGF, and bone	99.5
KOG4292|consensus	454		99.43
KOG4586|consensus	156		99.1
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	98.59
KOG4292|consensus	454		98.16
PF05428	311	CRF-BP: Corticotropin-releasing factor binding pro	98.09
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.76
PF12662	24	cEGF: Complement Clr-like EGF-like	97.25
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	96.2
PF02408	120	CUB_2: CUB-like domain; InterPro: IPR003366 This d	96.19
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	94.71
smart00181	35	EGF Epidermal growth factor-like domain.	92.99
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	92.35
PF05428	311	CRF-BP: Corticotropin-releasing factor binding pro	91.78
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	87.45
cd00053	36	EGF Epidermal growth factor domain, found in epide	84.69
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	83.02
KOG4289|consensus	2531		81.5
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	81.34

>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork

Probab=99.75  E-value=1.4e-18  Score=113.56  Aligned_cols=68  Identities=43%  Similarity=0.870  Sum_probs=60.1

Q ss_pred             CCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCCc
Q psy11864        118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDS  189 (193)
Q Consensus       118 C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~~  189 (193)
                      ||+.+...+|.|+||+||..|+++.+|.|.|+++++++|.|+|..|+|+...    .|..|+|+|+||.+..
T Consensus         1 Cg~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~~----~c~~d~l~v~~g~~~~   68 (110)
T PF00431_consen    1 CGGRLTNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESSD----SCCQDYLEVYDGNDES   68 (110)
T ss_dssp             SEEEECSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--TT----TSTSSEEEEESSSSTT
T ss_pred             CcCEEECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceeee----eecccceeEEeecccc
Confidence            7778888999999999999999999999999999999999999999999876    7989999999999865

; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....

>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

Probab=99.74  E-value=8.5e-18  Score=110.34  Aligned_cols=67  Identities=43%  Similarity=1.003  Sum_probs=62.0

Q ss_pred             CCCCcccC-CCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCC
Q psy11864        118 CGGILNTP-NGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGD  188 (193)
Q Consensus       118 C~~~~~~~-~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~  188 (193)
                      |++.+... .|.|.||+||..|+++.+|.|.|+++++++|.|+|..|+|+...    .|..|+|+||||...
T Consensus         1 C~~~~~~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~----~C~~d~l~i~~g~~~   68 (113)
T cd00041           1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSP----NCSYDYLEIYDGPST   68 (113)
T ss_pred             CCCEEccCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCcccccCC----CCCCcEEEEEcCCCC
Confidence            67777666 99999999999999999999999999999999999999998765    899999999999875

>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

Probab=99.71  E-value=4.3e-17  Score=105.18  Aligned_cols=57  Identities=47%  Similarity=1.044  Sum_probs=54.1

Q ss_pred             CCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCC
Q psy11864        127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIG  187 (193)
Q Consensus       127 g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~  187 (193)
                      |.|.||+||..||++.+|.|.|+++++++|.|+|..|+|+...    .|..|+|+|+||.+
T Consensus         1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~----~C~~d~l~i~~g~~   57 (102)
T smart00042        1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSD----NCEYDYVEIYDGPS   57 (102)
T ss_pred             CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCCC----CeeEeEEEEEeCCC
Confidence            6899999999999999999999999999999999999999865    79999999999986

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.

>KOG4586|consensus

Probab=99.64  E-value=2.2e-16  Score=101.33  Aligned_cols=74  Identities=42%  Similarity=0.801  Sum_probs=68.6

Q ss_pred             CEEEeeE-EeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEeccc
Q psy11864          1 VALKFQS-FEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMK   74 (193)
Q Consensus         1 I~l~F~~-f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~   74 (193)
                      |.+.|.+ +.+|.+-+|..|.|+|.||+-.-++++++|||...|+.|.|++..|||+|++|+.....||.|+|..
T Consensus        79 ve~~Fde~y~IEps~EC~fD~iEvrDGpfGFSPlI~rfCG~~nPp~Irs~grFlWIkF~sD~ele~~gfsa~y~~  153 (156)
T KOG4586|consen   79 VEVKFDEVYHIEPSYECPFDFIEVRDGPFGFSPLIARFCGDRNPPEIRSVGRFLWIKFRSDSELEYQGFSAEYAI  153 (156)
T ss_pred             eEEeeeeeEEecccccCCCCcccccCCCcCccHHHHHHhccCCChhheecCcEEEEEEcccchhhhcccceeeec
Confidence            4566765 8899999999999999999999999999999999999999999999999999999999999999964

>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork

Probab=99.54  E-value=2.5e-14  Score=93.32  Aligned_cols=72  Identities=43%  Similarity=0.856  Sum_probs=65.3

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEec
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIF   72 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~   72 (193)
                      |+|+|..|+|+....|..|+|+|++|.....+.++++||...|..++|.++.|+|+|+++......||+|+|
T Consensus        39 I~l~f~~~~~~~~~~c~~d~l~v~~g~~~~~~~~~~~cg~~~~~~i~s~~~~l~i~f~s~~~~~~~gF~~~y  110 (110)
T PF00431_consen   39 IRLTFLSFDLESSDSCCQDYLEVYDGNDESSPLLGRFCGSSPPPSIISSSNSLFIRFHSDSSNSSRGFKATY  110 (110)
T ss_dssp             EEEEEEEEEB--TTTSTSSEEEEESSSSTTSEEEEEESSSSCCEEEEESSSEEEEEEEESSSSTTSEEEEEE
T ss_pred             eeeccccccceeeeeecccceeEEeeccccceeeeeccCCcCCccEEECCCEEEEEEEECCCCCCccEEEEC
Confidence            689999999998888999999999999877788999999888889999999999999999999999999986

; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....

>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

Probab=99.51  E-value=1.1e-13  Score=90.72  Aligned_cols=73  Identities=45%  Similarity=0.935  Sum_probs=66.7

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecc
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFM   73 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~   73 (193)
                      |+|+|.+|+|+....|..|+|+|++|.......++++||...|..+.|+++.|.|+|+++....+.||++.|.
T Consensus        40 i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~~~~~~~s~~~~~~i~f~s~~~~~~~GF~~~y~  112 (113)
T cd00041          40 IRLTFEDFDLESSPNCSYDYLEIYDGPSTSSPLLGRFCGSTLPPPIISSGNSLTVRFRSDSSVTGRGFKATYS  112 (113)
T ss_pred             EEEEEeCcccccCCCCCCcEEEEEcCCCCccccceeeECCCCCCCEEecCCEEEEEEEeCCCCCCCCEEEEEE
Confidence            6799999999988889999999999987656778999999888999999999999999999889999999985

>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

Probab=99.50  E-value=1.3e-13  Score=88.87  Aligned_cols=72  Identities=53%  Similarity=1.005  Sum_probs=62.7

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCC-ceEecCCEEEEEEecCCCCCCCCceEec
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP-DIKSSGTKLMIKFVSDGSVQKPGFSAIF   72 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~-~i~s~~~~l~v~f~sd~~~~~~GF~~~~   72 (193)
                      |+|+|..|+|+....|..|+|+|++|.......++++||...|. .+.|.+|.|+|+|+++....+.||+++|
T Consensus        30 i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~~~~~~~~s~~n~~~i~f~s~~~~~~~GF~~~y  102 (102)
T smart00042       30 IELQFTDFDLESSDNCEYDYVEIYDGPSASSPLLGRFCGSELPPPVISSSSNSLTVTFVSDSSVQKRGFSARY  102 (102)
T ss_pred             EEEEEEEEeccCCCCeeEeEEEEEeCCCCCCceeEEEecCcCCCCeEEcCCCEEEEEEEeCCCCCCCCeEEEC
Confidence            67999999999888899999999999875567788999988655 5667799999999999888889999976

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.

>KOG4292|consensus

Probab=99.43  E-value=1.3e-12  Score=101.40  Aligned_cols=171  Identities=22%  Similarity=0.262  Sum_probs=116.6

Q ss_pred             CCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecccccccccC-------------
Q psy11864         15 QCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECAL-------------   81 (193)
Q Consensus        15 ~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~~~~~c~~-------------   81 (193)
                      .+....+.++.+.+.+..+.+++||...|..+.|..+.+-+.|.++-.....||.+.+..-...|..             
T Consensus       101 ~~~~~~~~~~v~~s~n~~l~~~~~~~t~p~~~es~~~~~~q~~~~~l~a~~~~~~~t~~~~~~~~~~~~~~t~~~q~sg~  180 (454)
T KOG4292|consen  101 SPLDRLLGLYVGLSENANLAGTQCGSTVPGPFESSRGFLGQQFISDLLAEREGFSATPTYMDMYCGGTYNITFTTQNSGS  180 (454)
T ss_pred             ccchhhhcccccccccccccccccCCcCCccccccCCccceEEechhhccccccCCccccccCCCCcccceeecCccccc
Confidence            3445567778888778889999999999999999999999999998877777777655321111111             


Q ss_pred             ------------------CCCCccce------eecCCCceEEeccCCeE-------------------------------
Q psy11864         82 ------------------EDHGCEHT------CKNILGGYECSCKIGYE-------------------------------  106 (193)
Q Consensus        82 ------------------~~~~c~~~------c~~~~~~~~c~c~~g~~-------------------------------  106 (193)
                                        ....++..      +...+....-.|+..+.                               
T Consensus       181 ~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~pt~n~c~s~~L~i~m~~~s~~~~~~~~~~~~~~~~~as~~~~  260 (454)
T KOG4292|consen  181 IPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAPTINECESASLTIFMSYKSEKYGGHGNSRPQECGRNASCGSD  260 (454)
T ss_pred             ccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCcccccccceeEEEEeccCCcccccccCcChhhccccccccch
Confidence                              00000000      00000000000111100                               


Q ss_pred             -----------------EccCCccc---ccCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEee
Q psy11864        107 -----------------LHSDGKIC---LDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIE  166 (193)
Q Consensus       107 -----------------l~~~~~~C---~~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~  166 (193)
                                       .....+.+   .+.|++++....|.++||+||..|+++.+|+|++.++.++.|.|.|+.|-++
T Consensus       261 ~~~s~s~s~~i~~S~~~~r~s~~~~~~~~~~C~~~~~~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~  340 (454)
T KOG4292|consen  261 FYSSMSTSKVIFSSGNLNRRSRTNETYQISDCNRTYHGKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIE  340 (454)
T ss_pred             hhhhhhhhhhhccccccccccccCCCccccccccceecceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccch
Confidence                             00001111   1478888877899999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCcEEEEEeCCCCc
Q psy11864        167 GNNLFQSSCEYDNLTVFSKIGDS  189 (193)
Q Consensus       167 ~~~~~~~~C~~D~l~I~dg~~~~  189 (193)
                      ...    .|.+|||+...|.+..
T Consensus       341 ~s~----~C~~d~l~~r~~~~~~  359 (454)
T KOG4292|consen  341 NSR----ECINDYLVLRNGNSGN  359 (454)
T ss_pred             hhh----hhccceEEeccCCCCC
Confidence            887    9999999988877654

>KOG4586|consensus

Probab=99.10  E-value=1.6e-10  Score=74.55  Aligned_cols=60  Identities=28%  Similarity=0.528  Sum_probs=54.6

Q ss_pred             ccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEee-EEeecCCCCCCCCCCcEEEEEeCC
Q psy11864        123 NTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEYDNLTVFSKI  186 (193)
Q Consensus       123 ~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~-f~l~~~~~~~~~C~~D~l~I~dg~  186 (193)
                      ....+.++|||||+.||++.+|...|.+.+.+-|.+.|.. |.+|..-    .|..|+|||.||+
T Consensus        46 ~~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEps~----EC~fD~iEvrDGp  106 (156)
T KOG4586|consen   46 LQNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEPSY----ECPFDFIEVRDGP  106 (156)
T ss_pred             ecccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecccc----cCCCCcccccCCC
Confidence            4456788999999999999999999999999999999976 8898875    9999999999997

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=98.59  E-value=6.3e-08  Score=49.37  Aligned_cols=36  Identities=47%  Similarity=1.217  Sum_probs=30.5

Q ss_pred             ccCCCCCccceeecCCCceEEeccCCeEEccCCccc
Q psy11864         79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC  114 (193)
Q Consensus        79 c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C  114 (193)
                      |...+++|.+.|++.++++.|.|++||.|..|+++|
T Consensus         1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen    1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC   36 (36)
T ss_dssp             CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred             CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence            455678999999999999999999999999998876

...

>KOG4292|consensus

Probab=98.16  E-value=3.4e-06  Score=66.39  Aligned_cols=69  Identities=26%  Similarity=0.562  Sum_probs=59.1

Q ss_pred             CCCCCc-ccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCC
Q psy11864        117 ACGGIL-NTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGD  188 (193)
Q Consensus       117 ~C~~~~-~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~  188 (193)
                      .|+.++ ++.+|.+.+|+||..|..+--|.|.|.+++++++.|+|..+++....   +.|..-+|.|+++.+.
T Consensus       168 ~~~~t~~~q~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~pt~---n~c~s~~L~i~m~~~s  237 (454)
T KOG4292|consen  168 TYNITFTTQNSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAPTI---NECESASLTIFMSYKS  237 (454)
T ss_pred             ccceeecCcccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCccc---ccccceeEEEEeccCC
Confidence            344444 56679999999999999999999999999999999999999887653   5899999999998643

>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP)

Probab=98.09  E-value=0.00013  Score=54.45  Aligned_cols=136  Identities=19%  Similarity=0.356  Sum_probs=90.5

Q ss_pred             CEEEeeEEeecCCCCCC-CcEEEEEeCCCCC--------------CCcccCccCccCC-CceEecCCEEEEEEecCCCCC
Q psy11864          1 VALKFQSFEIENHDQCT-YDYVEIRDGHAPD--------------SPIIGTYCGYKLP-PDIKSSGTKLMIKFVSDGSVQ   64 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~-~d~l~v~dg~~~~--------------~~~~~~~cg~~~p-~~i~s~~~~l~v~f~sd~~~~   64 (193)
                      |.|+|..+++.    |. .|+|.|+||-.-.              ......||+...+ ..+.|+.|.+.|.|+-.  ..
T Consensus        93 IeI~~~~vdid----C~~G~ll~v~DGW~LnGe~FPs~~DHplpl~eR~~efC~~~~~~~~~rSSQNvAmi~fRip--~~  166 (311)
T PF05428_consen   93 IEIEFDHVDID----CEGGDLLKVFDGWELNGEKFPSSQDHPLPLEERYTEFCDSGPNRRSFRSSQNVAMIQFRIP--SP  166 (311)
T ss_pred             EEEEEEEeecc----CCCCCEEEEEeceEECccCCcCcccCCCchHHHHHHhccCCCCcceeEeccceEEEEEEec--CC
Confidence            56788888875    54 8999999985421              1123468998655 46899999999999866  44


Q ss_pred             CCCceEecccccccccCCCCCccceeecCCCceEEeccCCeEEccCCcccccCCCCCcccCCCCccCCCCCCCCCCCCce
Q psy11864         65 KPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTC  144 (193)
Q Consensus        65 ~~GF~~~~~~~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C  144 (193)
                      +.||.++.....+                                     ..+|+-....++|.++--||    ....+|
T Consensus       167 GsgFt~~vR~~~N-------------------------------------p~PCNVisq~~~g~fTl~n~----gq~rNC  205 (311)
T PF05428_consen  167 GSGFTLTVRFIKN-------------------------------------PFPCNVISQSPEGRFTLRNP----GQRRNC  205 (311)
T ss_pred             CCceEEEEEeCCC-------------------------------------CCCceEeccCCCcceEEECC----CcccCc
Confidence            6789888765332                                     24565555666777665443    446789


Q ss_pred             EEEEEcCCCCeEEEEEeeEEeecCC------CCCCCCCC--cEEEEEeCCC
Q psy11864        145 IWEIVAPPQYRISLNFTHFDIEGNN------LFQSSCEY--DNLTVFSKIG  187 (193)
Q Consensus       145 ~w~I~~~~~~~i~l~F~~f~l~~~~------~~~~~C~~--D~l~I~dg~~  187 (193)
                      +..|--|    +.++..++.|...+      .....|..  |||+|-.|..
T Consensus       206 Sfs~iyP----~~i~i~~L~lG~~~~l~~~~~~~~~C~~~~D~Vei~Gg~G  252 (311)
T PF05428_consen  206 SFSIIYP----VVISISDLSLGHTNGLELQRGVIHGCQGSGDFVEIGGGNG  252 (311)
T ss_pred             EEEEEee----eEEEEEEEecccccCcccccccccCCCCcCCeEEECCcCC
Confidence            9988766    56666777765511      01235653  9999976654

Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.76  E-value=5.2e-05  Score=40.25  Aligned_cols=38  Identities=53%  Similarity=1.044  Sum_probs=31.4

Q ss_pred             cccccCCCCCcc--ceeecCCCceEEeccCCeEEccCCcc
Q psy11864         76 FDECALEDHGCE--HTCKNILGGYECSCKIGYELHSDGKI  113 (193)
Q Consensus        76 ~~~c~~~~~~c~--~~c~~~~~~~~c~c~~g~~l~~~~~~  113 (193)
                      +++|......|.  ..|.+..|++.|.|++||....++..
T Consensus         2 idEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~   41 (42)
T PF07645_consen    2 IDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTT   41 (42)
T ss_dssp             SSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSE
T ss_pred             ccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCc
Confidence            578888777786  68999999999999999996555443

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.25  E-value=0.00021  Score=32.74  Aligned_cols=21  Identities=52%  Similarity=1.205  Sum_probs=18.8

Q ss_pred             ceEEeccCCeEEccCCccccc
Q psy11864         96 GYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        96 ~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ++.|.|++||.+..++.+|.+
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~D   21 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCED   21 (24)
T ss_pred             CEEeeCCCCCcCCCCCCcccc
Confidence            578999999999999999875

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=96.20  E-value=0.0047  Score=45.39  Aligned_cols=38  Identities=39%  Similarity=0.785  Sum_probs=32.2

Q ss_pred             ccccccCCCCCccceeecCCCceEEeccCCeEEccCCc
Q psy11864         75 EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGK  112 (193)
Q Consensus        75 ~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~  112 (193)
                      ..++|...+..|.+.|.+..|++.|.|.+||.+..+++
T Consensus       186 ~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~  223 (224)
T cd01475         186 VPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK  223 (224)
T ss_pred             CchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCC
Confidence            45567777778999999999999999999999877654

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins

Probab=96.19  E-value=0.019  Score=37.85  Aligned_cols=43  Identities=26%  Similarity=0.538  Sum_probs=32.6

Q ss_pred             CCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCCc
Q psy11864        137 LYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDS  189 (193)
Q Consensus       137 ~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~~  189 (193)
                      .+|.+.+|.|.|.+|.|+-++|++.. ++.. .        |.+.|.|.....
T Consensus        37 ~~p~n~~C~y~i~iP~G~~a~v~~~~-~~~~-~--------d~i~v~D~~g~~   79 (120)
T PF02408_consen   37 QFPANQNCTYQINIPKGYYAKVTLSA-NLND-N--------DSITVTDSNGKS   79 (120)
T ss_pred             ccCCCCceEEEEEcCCceEEEEEEEE-ecCC-C--------CEEEEEecCCCE
Confidence            36778899999999999988888554 2222 2        899998876554

The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=94.71  E-value=0.06  Score=27.34  Aligned_cols=29  Identities=48%  Similarity=1.149  Sum_probs=21.6

Q ss_pred             ccccCCCCCccc--eeecCCCceEEeccCCeE
Q psy11864         77 DECALEDHGCEH--TCKNILGGYECSCKIGYE  106 (193)
Q Consensus        77 ~~c~~~~~~c~~--~c~~~~~~~~c~c~~g~~  106 (193)
                      ++|... ..|..  .|.+..+++.|.|++||.
T Consensus         3 ~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~   33 (39)
T smart00179        3 DECASG-NPCQNGGTCVNTVGSYRCECPPGYT   33 (39)
T ss_pred             ccCcCC-CCcCCCCEeECCCCCeEeECCCCCc
Confidence            445432 34554  799999999999999996

>smart00181 EGF Epidermal growth factor-like domain

Probab=92.99  E-value=0.17  Score=24.99  Aligned_cols=25  Identities=44%  Similarity=0.929  Sum_probs=20.4

Q ss_pred             CCccc-eeecCCCceEEeccCCeEEc
Q psy11864         84 HGCEH-TCKNILGGYECSCKIGYELH  108 (193)
Q Consensus        84 ~~c~~-~c~~~~~~~~c~c~~g~~l~  108 (193)
                      ..|.+ .|.+..+++.|.|.+||.+.
T Consensus         6 ~~C~~~~C~~~~~~~~C~C~~g~~g~   31 (35)
T smart00181        6 GPCSNGTCINTPGSYTCSCPPGYTGD   31 (35)
T ss_pred             CCCCCCEEECCCCCeEeECCCCCccC
Confidence            34666 78888999999999999763

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=92.35  E-value=0.13  Score=26.02  Aligned_cols=27  Identities=48%  Similarity=1.023  Sum_probs=18.6

Q ss_pred             CCCCCcc--ceeecCCCceEEeccCCeEE
Q psy11864         81 LEDHGCE--HTCKNILGGYECSCKIGYEL  107 (193)
Q Consensus        81 ~~~~~c~--~~c~~~~~~~~c~c~~g~~l  107 (193)
                      ..++.|.  ..|.+..+++.|.|.+||..
T Consensus         3 ~~~~~C~~nA~C~~~~~~~~C~C~~Gy~G   31 (36)
T PF12947_consen    3 ENNGGCHPNATCTNTGGSYTCTCKPGYEG   31 (36)
T ss_dssp             TGGGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred             CCCCCCCCCcEeecCCCCEEeECCCCCcc
Confidence            3344554  37999999999999999964

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP)

Probab=91.78  E-value=0.63  Score=35.34  Aligned_cols=39  Identities=36%  Similarity=0.569  Sum_probs=34.3

Q ss_pred             CCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCC-CcEEEEEeC
Q psy11864        139 IKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCE-YDNLTVFSK  185 (193)
Q Consensus       139 ~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~-~D~l~I~dg  185 (193)
                      .+...|--.+-+.|.+.|.|+|..+++        +|. .|+|.|+||
T Consensus        76 ~pq~~Ca~y~iaePd~~IeI~~~~vdi--------dC~~G~ll~v~DG  115 (311)
T PF05428_consen   76 RPQLVCAAYFIAEPDELIEIEFDHVDI--------DCEGGDLLKVFDG  115 (311)
T ss_pred             CCCceeEEEEEeCCCeEEEEEEEEeec--------cCCCCCEEEEEec
Confidence            447889999999999999999999999        454 499999998

Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=87.45  E-value=1  Score=21.99  Aligned_cols=19  Identities=47%  Similarity=1.146  Sum_probs=16.4

Q ss_pred             eeecCC-CceEEeccCCeEE
Q psy11864         89 TCKNIL-GGYECSCKIGYEL  107 (193)
Q Consensus        89 ~c~~~~-~~~~c~c~~g~~l  107 (193)
                      +|.... +.+.|.|++||..
T Consensus        11 ~C~~~~~~~y~C~C~~G~~G   30 (32)
T PF00008_consen   11 TCIDLPGGGYTCECPPGYTG   30 (32)
T ss_dssp             EEEEESTSEEEEEEBTTEES
T ss_pred             EEEeCCCCCEEeECCCCCcc
Confidence            788888 8999999999963

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=84.69  E-value=1.7  Score=20.97  Aligned_cols=21  Identities=43%  Similarity=0.890  Sum_probs=17.4

Q ss_pred             ceeecCCCceEEeccCCeEEc
Q psy11864         88 HTCKNILGGYECSCKIGYELH  108 (193)
Q Consensus        88 ~~c~~~~~~~~c~c~~g~~l~  108 (193)
                      ..|.+..+.+.|.|+.||...
T Consensus        12 ~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053          12 GTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CEEecCCCCeEeECCCCCccc
Confidence            578888889999999999653

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=83.02  E-value=0.95  Score=17.31  Aligned_cols=10  Identities=30%  Similarity=0.870  Sum_probs=6.9

Q ss_pred             EEeccCCeEE
Q psy11864         98 ECSCKIGYEL  107 (193)
Q Consensus        98 ~c~c~~g~~l  107 (193)
                      .|.|++||..
T Consensus         1 ~C~C~~G~~G   10 (13)
T PF12661_consen    1 TCQCPPGWTG   10 (13)
T ss_dssp             EEEE-TTEET
T ss_pred             CccCcCCCcC
Confidence            4889999963

>KOG4289|consensus

Probab=81.50  E-value=11  Score=35.60  Aligned_cols=44  Identities=32%  Similarity=0.764  Sum_probs=36.4

Q ss_pred             CCCceEeccc-ccccccCCCCCccceeecCCCceEEeccCCeEEc
Q psy11864         65 KPGFSAIFMK-EFDECALEDHGCEHTCKNILGGYECSCKIGYELH  108 (193)
Q Consensus        65 ~~GF~~~~~~-~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~  108 (193)
                      ..||...|+. .++.|.....+-..+|....+.|+|.|.+||+..
T Consensus      1227 PpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGe 1271 (2531)
T KOG4289|consen 1227 PPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGE 1271 (2531)
T ss_pred             CCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCcccc
Confidence            4788888865 6788887776667799999999999999999754

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=81.34  E-value=2.8  Score=20.51  Aligned_cols=21  Identities=48%  Similarity=0.986  Sum_probs=17.4

Q ss_pred             cceeecCCCceEEeccCCeEE
Q psy11864         87 EHTCKNILGGYECSCKIGYEL  107 (193)
Q Consensus        87 ~~~c~~~~~~~~c~c~~g~~l  107 (193)
                      ...|.+..+.+.|.|.+||..
T Consensus        14 ~~~C~~~~~~~~C~C~~g~~g   34 (38)
T cd00054          14 GGTCVNTVGSYRCSCPPGYTG   34 (38)
T ss_pred             CCEeECCCCCeEeECCCCCcC
Confidence            347888889999999999864

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
2qqk_A	579	Neuropilin-2 A1a2b1b2 Domains In Complex With A Sem		1e-20
2qqk_A	579	Neuropilin-2 A1a2b1b2 Domains In Complex With A Sem		1e-05
3dem_A	278	Cub1-egf-cub2 Domain Of Human Masp-1/3 Length = 278		4e-20
3dem_A	278	Cub1-egf-cub2 Domain Of Human Masp-1/3 Length = 278		3e-06
4aqb_A	361	Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44 L		5e-20
4aqb_A	361	Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44 L		3e-06
1nt0_A	286	Crystal Structure Of The Cub1-Egf-Cub2 Region Of Ma		1e-19
1nt0_A	286	Crystal Structure Of The Cub1-Egf-Cub2 Region Of Ma		2e-06
3kq4_B	457	Structure Of Intrinsic Factor-Cobalamin Bound To It		2e-13
3kq4_B	457	Structure Of Intrinsic Factor-Cobalamin Bound To It		2e-05
4gz9_A	577	Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2		3e-13
4gz9_A	577	Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2		3e-06
1szb_A	170	Crystal Structure Of The Human Mbl-Associated Prote		4e-12
1szb_A	170	Crystal Structure Of The Human Mbl-Associated Prote		5e-08
2wno_A	149	X-Ray Structure Of Cub_c Domain From Tsg-6 Length =		3e-09
2wno_A	149	X-Ray Structure Of Cub_c Domain From Tsg-6 Length =		1e-05
2qqm_A	450	Crystal Structure Of The A2b1b2 Domains From Human		1e-08
2qqm_A	450	Crystal Structure Of The A2b1b2 Domains From Human		3e-04
2qqo_A	460	Crystal Structure Of The A2b1b2 Domains From Human		3e-08
2qqo_A	460	Crystal Structure Of The A2b1b2 Domains From Human		5e-07
1nzi_A	159	Crystal Structure Of The Cub1-Egf Interaction Domai		4e-08
1nzi_A	159	Crystal Structure Of The Cub1-Egf Interaction Domai		5e-04
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		1e-04
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		1e-04
3pob_A	115	Crystal Structure Of Masp-1 Cub2 Domain In Complex		1e-04
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		7e-04

>pdb|2QQK|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A Semaphorin-Blocking Fab Length = 579

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 90/189 (47%), Gaps = 40/189 (21%)
Query: 1   VALKFQS-FEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVS 59
           + L F   FEIE HD C YD++EIRDG +  + ++G +CG   PP I SSG+ L IKF S
Sbjct: 46  IVLNFNPHFEIEKHD-CKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTS 104
Query: 60  DGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           D + Q  GFS                                 + YE+   G    + C 
Sbjct: 105 DYARQGAGFS---------------------------------LRYEIFKTGS---EDCS 128
Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLF--QSSCEY 177
               +PNGT+ SP FP+ Y  N  C + I+A P+  I L F  FD+E + L   +  C+Y
Sbjct: 129 KNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKY 188
Query: 178 DNLTVFSKI 186
           D L ++  I
Sbjct: 189 DWLDIWDGI 197

>pdb|2QQK|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A Semaphorin-Blocking Fab Length = 579

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 10/75 (13%)
Query: 118 CGGILNTPN-GTLTSPSFPDLYIKNKTCIWEIVAP-PQYRISLNFT-HFDIEGNNLFQSS 174
           CGG LN+ + G +TSP +P  Y  ++ C W + AP P  +I LNF  HF+IE ++     
Sbjct: 6   CGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKHD----- 60
Query: 175 CEYDNLTVFSKIGDS 189
           C+YD + +  + GDS
Sbjct: 61  CKYDFIEI--RDGDS 73

>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3 Length = 278

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 24/203 (11%)
Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPD--------IKSSGTK 52
           + L F  F +E+   C YDYV++      +  ++ T+CG +            + S G+ 
Sbjct: 39  IKLYFMHFNLESSYLCEYDYVKVET----EDQVLATFCGRETTDTEQTPGQEVVLSPGSF 94
Query: 53  LMIKFVSDGSVQK--PGFSAIFMK-EFDECAL---EDHGCEHTCKNILGGYECSCKIGYE 106
           + I F SD S ++   GF A +M  + DEC     E+  C+H C N +GGY CSC+ GY 
Sbjct: 95  MSITFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYI 154
Query: 107 LHSDGKICLDACGGILNTPN-GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FD 164
           LH+D + C   C   L T   G +TSP FP+ Y K+  C++ I     + ++L F   FD
Sbjct: 155 LHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFD 214
Query: 165 IEGNNLFQSSCEYDNLTVFSKIG 187
           IE +   +  C YD + +  K+G
Sbjct: 215 IEDHP--EVPCPYDYIKI--KVG 233

>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3 Length = 278

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 122 LNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 181
           LN   G + SP +PD Y  +    W I  P  +RI L F HF++E + L    CEYD + 
Sbjct: 5   LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYL----CEYDYVK 60
Query: 182 V 182
           V
Sbjct: 61  V 61

>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44 Length = 361

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 103/203 (50%), Gaps = 24/203 (11%)
Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPD--------IKSSGTK 52
           + L F  F +E+   C YDYV++      +  ++ T+CG +            + S G+ 
Sbjct: 39  IKLYFMHFNLESSYLCEYDYVKVET----EDQVLATFCGRETTDTEQTPGQEVVLSPGSF 94
Query: 53  LMIKFVSDGSVQK--PGFSAIFMK-EFDECAL---EDHGCEHTCKNILGGYECSCKIGYE 106
           + I F SD S ++   GF A +M  + DEC     E+  C+H C N +GGY CSC+ GY 
Sbjct: 95  MSITFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYI 154
Query: 107 LHSDGKICLDACGGILNTPN-GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FD 164
           LH+D + C   C   L T   G +TSP FP+ Y K+  C++ I     + ++L F   FD
Sbjct: 155 LHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFD 214
Query: 165 IEGNNLFQSSCEYDNLTVFSKIG 187
           IE +   +  C YD + +  K+G
Sbjct: 215 IEDHP--EVPCPYDYIKI--KVG 233

>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44 Length = 361

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 122 LNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 181
           LN   G + SP +PD Y  +    W I  P  +RI L F HF++E + L    CEYD + 
Sbjct: 5   LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYL----CEYDYVK 60
Query: 182 V 182
           V
Sbjct: 61  V 61

>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2 Length = 286

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 101/198 (51%), Gaps = 22/198 (11%)
Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGY------KLPPD--IKSSGTK 52
           + L F  F +E   +C YD+V++  G    + ++ T CG       + P +    S G  
Sbjct: 38  LRLYFTHFNLELSYRCEYDFVKLTSG----TKVLATLCGQESTDTERAPGNDTFYSLGPS 93
Query: 53  LMIKFVSDGSVQKP--GFSAIFMKE-FDEC--ALEDH-GCEHTCKNILGGYECSCKIGYE 106
           L + F SD S +KP  GF A +  E  DEC  +L D   C+H C   LGGY CSC++GY 
Sbjct: 94  LKVTFHSDYSNEKPFTGFEAFYAAEDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYI 153
Query: 107 LHSDGKICLDACGG-ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FD 164
           LH +   C   C G +    +G L+SP +P  Y K  +C + I     + I+L+F   FD
Sbjct: 154 LHQNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFD 213
Query: 165 IEGNNLFQSSCEYDNLTV 182
           +E +   ++ C YD+L +
Sbjct: 214 VEMHP--EAQCPYDSLKI 229

>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2 Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYD--NLTVFS 184
           G L SP FP+ Y  ++   W + APP +R+ L FTHF++E        CEYD   LT  +
Sbjct: 9   GRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLE----LSYRCEYDFVKLTSGT 64
Query: 185 KI 186
           K+
Sbjct: 65  KV 66

>pdb|3KQ4|B Chain B, Structure Of Intrinsic Factor-Cobalamin Bound To Its Receptor Cubilin Length = 457

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 1   VALKFQSFEIENHDQCTY-DYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVS 59
           +A+ F +F +E      Y D++EIRDG    SP++G + G  LPP I S   KL +KF S
Sbjct: 155 IAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKS 214
Query: 60  DGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           D    + GFSA +                                     DG      CG
Sbjct: 215 DQIDTRSGFSAYW-------------------------------------DGSST--GCG 235
Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
           G L T +GT  SP++P  Y  +  C W + +       L F  F +E       +C  D 
Sbjct: 236 GNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLE----HHPNCTLDY 291
Query: 180 LTVF 183
           L V+
Sbjct: 292 LAVY 295

>pdb|3KQ4|B Chain B, Structure Of Intrinsic Factor-Cobalamin Bound To Its Receptor Cubilin Length = 457

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 177
           CG IL    GT+ SP  P++Y     C W I+  P + I L F  F +E    F  +C  
Sbjct: 1   CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLE----FHYNCTN 56
Query: 178 DNLTVF 183
           D L V+
Sbjct: 57  DYLEVY 62

>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2) Length = 577

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 73/181 (40%), Gaps = 46/181 (25%)
Query: 8   FEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPG 67
           F++E+ D C YDYVE+ DG      + G +CG   P  + SSG  L IKFVSD      G
Sbjct: 57  FDLEDRD-CKYDYVEVIDGENEGGRLWGKFCGKIAPSPVVSSGPFLFIKFVSDYETHGAG 115
Query: 68  FSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNG 127
           FS                                 I YE+   G      C      P G
Sbjct: 116 FS---------------------------------IRYEIFKRGP----ECSQNYTAPTG 138
Query: 128 TLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNN-----LFQSSCEYDNLTV 182
            + SP FP+ Y  +  C + I AP    I L F  FD+E ++     +F   C YD L +
Sbjct: 139 VIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDSNPPGGMF---CRYDRLEI 195
Query: 183 F 183
           +
Sbjct: 196 W 196

>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2) Length = 577

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 116 DACGGILNTPN-GTLTSPSFPDLYIKNKTCIWEIVAP-PQYRISLNFT-HFDIEGNNLFQ 172
           D CGG +   N G LTSP +P  Y  ++ C W I AP P  RI +NF  HFD+E  +   
Sbjct: 7   DKCGGTIKIENPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLEDRD--- 63
Query: 173 SSCEYDNLTV 182
             C+YD + V
Sbjct: 64  --CKYDYVEV 71

>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19 (Map19) Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIK--------SSGTK 52
           + L F  F++E    C YD+V++  G    + ++ T CG +     +        S G+ 
Sbjct: 42  LRLYFTHFDLELSHLCEYDFVKLSSG----AKVLATLCGQESTDTERAPGKDTFYSLGSS 97
Query: 53  LMIKFVSDGSVQKP--GFSAIFMKE-FDECAL---EDHGCEHTCKNILGGYECSCKIGYE 106
           L I F SD S +KP  GF A +  E  DEC +   E   C+H C N LGG+ CSC+ GY 
Sbjct: 98  LDITFRSDYSNEKPFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
Query: 107 LHSDGKIC 114
           LH + + C
Sbjct: 158 LHRNKRTC 165

>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19 (Map19) Length = 170

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFS 184
           G L SP FP  Y  ++   W + APP YR+ L FTHFD+E ++L    CEYD + + S
Sbjct: 13  GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHL----CEYDFVKLSS 66

>pdb|2WNO|A Chain A, X-Ray Structure Of Cub_c Domain From Tsg-6 Length = 149

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           + L F  F++E+   C  DYVEI D +      +G YCG +LP DI S+G  + +KF+SD
Sbjct: 45  IHLSFLDFDLEDDPGCLADYVEIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSD 104
Query: 61  GSVQKPGFSAIFM 73
            SV   GF   ++
Sbjct: 105 ASVTAGGFQIKYV 117

>pdb|2WNO|A Chain A, X-Ray Structure Of Cub_c Domain From Tsg-6 Length = 149

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIE 166
           CGG+   P     SP FP+ Y  N+ C W I      RI L+F  FD+E
Sbjct: 7   CGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLE 55

>pdb|2QQM|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human Neuropilin-1 Length = 450

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 1   VALKFQSFEIENHDQ------CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLM 54
           + L+F+SF++E          C YD +EI DG     P IG YCG K P  I+SS   L 
Sbjct: 49  IILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILS 108
Query: 55  IKFVSDGSVQKPGFSA 70
           + F +D ++ K GFSA
Sbjct: 109 MVFYTDSAIAKEGFSA 124

>pdb|2QQM|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human Neuropilin-1 Length = 450

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIE--GNNLFQSSC 175
           C     TP+G + SP FP+ Y  +  C + + AP    I L F  FD+E   N      C
Sbjct: 11  CSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFC 70
Query: 176 EYDNLTVFSKIGD 188
            YD L ++    D
Sbjct: 71  RYDRLEIWDGFPD 83

>pdb|2QQO|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human Neuropilin-2 Length = 460

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 1   VALKFQSFEIENHD-------QCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKL 53
           + L+F  F++E HD        C YD+++I DG     P+IG YCG K P +++SS   L
Sbjct: 46  IILQFLIFDLE-HDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGIL 104
Query: 54  MIKFVSDGSVQKPGFSAIFMKEFDECALEDHGC 86
            + F +D +V K GFSA +     E  LE+  C
Sbjct: 105 SLTFHTDMAVAKDGFSARYYLVHQE-PLENFQC 136

>pdb|2QQO|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human Neuropilin-2 Length = 460

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLF--QSSC 175
           C     +PNGT+ SP FP+ Y  N  C + I+A P+  I L F  FD+E + L   +  C
Sbjct: 8   CSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDC 67
Query: 176 EYDNLTVFSKI 186
           +YD L ++  I
Sbjct: 68  KYDWLDIWDGI 78

>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of Complement Protease C1s Length = 159

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYK--------LPPDIKSSGTK 52
           + L F   +IE  + C YD V+I  G   +    G  CG +        +  + +    K
Sbjct: 35  IHLYFTHLDIELSENCAYDSVQIISGDTEE----GRLCGQRSSNNPHSPIVEEFQVPYNK 90
Query: 53  LMIKFVSDGSVQK--PGFSAIFMK-EFDECA-LEDHGCEHTCKNILGGYECSCKIGYELH 108
           L + F SD S ++   GF+A ++  + +EC    D  C H C N +GGY CSC   Y LH
Sbjct: 91  LQVIFKSDFSNEERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLH 150
Query: 109 SDGKIC 114
            D K C
Sbjct: 151 DDMKNC 156

>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of Complement Protease C1s Length = 159

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFS 184
           G + SP++P  Y       W+I  P  Y I L FTH DIE       +C YD++ + S
Sbjct: 6   GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIE----LSENCAYDSVQIIS 59

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
           + CA E+ GC H C     G  C+C IG+EL SD K C+
Sbjct: 571 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 609

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL 115
           + CA E+ GC H C     G  C+C IG+EL SD K C+
Sbjct: 579 NPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI 617

>pdb|3POB|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain In Complex With The Collagen- Like Domain Of Mbl Length = 115

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 1   VALKFQS-FEIENHDQ--CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
           V L+F+  F+IE+H +  C YDY++I+ G    S + G +CG K P  I +    + I F
Sbjct: 43  VTLQFEDIFDIEDHPEVPCPYDYIKIKAG----SKVWGPFCGEKSPEPISTQSHSIQILF 98
Query: 58  VSDGSVQKPGF 68
            SD S +  G+
Sbjct: 99  RSDNSGENRGW 109

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
           + C + + GC   C+ I G  +C+C  GY L  DG+ C D
Sbjct: 4   ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQD 43

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	1e-52
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	8e-21
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	2e-15
3dem_A	278	Complement factor MAsp-3; complement system, innat	4e-51
3dem_A	278	Complement factor MAsp-3; complement system, innat	8e-20
3dem_A	278	Complement factor MAsp-3; complement system, innat	3e-19
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	2e-49
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	2e-19
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	4e-17
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	1e-48
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	1e-23
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	8e-17
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	6e-41
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	5e-39
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	8e-39
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	4e-19
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	1e-18
1nzi_A	159	Complement C1S component; calcium, innate immunity	2e-38
1nzi_A	159	Complement C1S component; calcium, innate immunity	1e-17
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	3e-34
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	2e-21
1szb_A	170	Mannose binding lectin-associated serine protease-	6e-33
1szb_A	170	Mannose binding lectin-associated serine protease-	3e-19
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	7e-27
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	3e-22
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	1e-25
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	1e-21
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	2e-24
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	5e-16
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	8e-24
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	1e-18
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	6e-21
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	3e-17
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	1e-19
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	6e-18
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	9e-13
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	3e-10
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	2e-12
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	2e-12
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	1e-11
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	3e-11
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	2e-10
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	3e-11
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	3e-09
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-08
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	3e-06
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	6e-11
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	3e-09
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	8e-11
2wph_E	59	Coagulation factor IXA light chain; serine proteas	3e-10
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-09
3v65_B	386	Low-density lipoprotein receptor-related protein;	3e-04
3v65_B	386	Low-density lipoprotein receptor-related protein;	3e-04
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	3e-09
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	7e-09
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	3e-09
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	3e-09
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	3e-09
1aut_L	114	Activated protein C; serine proteinase, plasma cal	4e-09
2bou_A	143	EGF-like module containing mucin-like hormone rece	6e-09
2bou_A	143	EGF-like module containing mucin-like hormone rece	4e-05
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	5e-08
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	2e-06
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	5e-06
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-07
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	6e-05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	9e-07
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	4e-06
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	8e-06
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	6e-05
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	7e-05
2vh0_B	134	Activated factor XA light chain; serine protease,	7e-05
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	1e-04
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	1e-04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-04
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	7e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	8e-04

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score =  175 bits (446), Expect = 1e-52
 Identities = 57/191 (29%), Positives = 80/191 (41%), Gaps = 38/191 (19%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           + L F          C YD++EIRDG +  + ++G +CG   PP I SSG+ L IKF SD
Sbjct: 46  IVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTSD 105

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
            + Q  GFS  +                                       K   + C  
Sbjct: 106 YARQGAGFSLRY------------------------------------EIFKTGSEDCSK 129

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSS--CEYD 178
              +PNGT+ SP FP+ Y  N  C + I+A P+  I L F  FD+E + L      C+YD
Sbjct: 130 NFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYD 189

Query: 179 NLTVFSKIGDS 189
            L ++  I   
Sbjct: 190 WLDIWDGIPHV 200

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 88.1 bits (218), Expect = 8e-21
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 1   VALKFQSFEIEN------HDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLM 54
           + L+F  F++E+         C YD+++I DG     P+IG YCG K P +++SS   L 
Sbjct: 165 IILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILS 224

Query: 55  IKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
           + F +D +V K GFSA +     E                             +SDG+  
Sbjct: 225 LTFHTDMAVAKDGFSARYYLVHQEPLENFQCNVPLGMESGRIANEQI-SASSTYSDGRWT 283

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 73.1 bits (179), Expect = 2e-15
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 117 ACGGILNTPN-GTLTSPSFPDLYIKNKTCIWEIVAP-PQYRISLNFTHFDIEGNNLFQSS 174
            CGG LN+ + G +TSP +P  Y  ++ C W + AP P  +I LNF              
Sbjct: 5   PCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEK----HD 60

Query: 175 CEYDNLTVFSKIGDS 189
           C+YD + +     +S
Sbjct: 61  CKYDFIEIRDGDSES 75

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score =  164 bits (417), Expect = 4e-51
 Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 14/195 (7%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKL----PPDIKSSGTKLMIK 56
           + L F  F +E+   C YDYV++       +   G              + S G+ + I 
Sbjct: 39  IKLYFMHFNLESSYLCEYDYVKVETEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSIT 98

Query: 57  FVSDGSVQKPGF------SAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSD 110
           F SD S ++          A+ + E  E   E+  C+H C N +GGY CSC+ GY LH+D
Sbjct: 99  FRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTD 158

Query: 111 GKICLDA-CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGN 168
            + C       +     G +TSP FP+ Y K+  C++ I     + ++L F   FDIE +
Sbjct: 159 NRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDH 218

Query: 169 NLFQSSCEYDNLTVF 183
              +  C YD + + 
Sbjct: 219 P--EVPCPYDYIKIK 231

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 83.4 bits (206), Expect = 8e-20
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 1   VALKFQS-FEIENHDQ--CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
           V L+F+  F+IE+H +  C YDY++I+ G      ++G +CG K P  I +    ++I F
Sbjct: 205 VNLQFEDIFDIEDHPEVPCPYDYIKIKVG----PKVLGPFCGEKAPEPISTQSHSVLILF 260

Query: 58  VSDGSVQKPGFSAIF 72
            SD S +  G+   +
Sbjct: 261 HSDNSGENRGWRLSY 275

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 81.9 bits (202), Expect = 3e-19
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 122 LNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 181
           LN   G + SP +PD Y  +    W I  P  +RI L F HF++E +      CEYD + 
Sbjct: 5   LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS----YLCEYDYVK 60

Query: 182 VFS 184
           V +
Sbjct: 61  VET 63

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score =  160 bits (406), Expect = 2e-49
 Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 14/196 (7%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP----DIKSSGTKLMIK 56
           + L F  F +E   +C YD+V++  G    + + G                S G  L + 
Sbjct: 38  LRLYFTHFNLELSYRCEYDFVKLTSGTKVLATLCGQESTDTERAPGNDTFYSLGPSLKVT 97

Query: 57  FVSDGSVQKPGFS------AIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSD 110
           F SD S +KP         A  + E      +   C+H C   LGGY CSC++GY LH +
Sbjct: 98  FHSDYSNEKPFTGFEAFYAAEDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQN 157

Query: 111 GKICLDA-CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGN 168
              C     G +    +G L+SP +P  Y K  +C + I     + I+L+F   FD+E +
Sbjct: 158 KHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH 217

Query: 169 NLFQSSCEYDNLTVFS 184
              ++ C YD+L + +
Sbjct: 218 P--EAQCPYDSLKIQT 231

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 82.7 bits (204), Expect = 2e-19
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 1   VALKF-QSFEIENHD--QCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
           + L F +SF++E H   QC YD ++I+          G +CG  LPP I++   K+ I F
Sbjct: 204 ITLDFVESFDVEMHPEAQCPYDSLKIQTD----KREYGPFCGKTLPPRIETDSNKVTITF 259

Query: 58  VSDGSVQKPGFSAIFMKEFDECALEDH 84
            +D S    G+   +           H
Sbjct: 260 TTDESGNHTGWKIHYTSTAQPHHHHHH 286

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 76.2 bits (187), Expect = 4e-17
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 126 NGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFS 184
            G L SP FP+ Y  ++   W + APP +R+ L FTHF++E +      CEYD + + S
Sbjct: 8   FGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELS----YRCEYDFVKLTS 62

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score =  160 bits (407), Expect = 1e-48
 Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 22/200 (11%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP--------DIKSSGTK 52
           + L F  F +E+   C YDYV++         ++ T+CG +            + S G+ 
Sbjct: 39  IKLYFMHFNLESSYLCEYDYVKVETE----DQVLATFCGRETTDTEQTPGQEVVLSPGSF 94

Query: 53  LMIKFVSDGSVQKPGF------SAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYE 106
           + I F SD S ++          A+ + E  E   E+  C+H C N +GGY CSC+ GY 
Sbjct: 95  MSITFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYI 154

Query: 107 LHSDGKICLDAC-GGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FD 164
           LH+D + C   C   +     G +TSP FP+ Y K+  C++ I     + ++L F   FD
Sbjct: 155 LHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFD 214

Query: 165 IEGNNLFQSSCEYDNLTVFS 184
           IE +   +  C YD + +  
Sbjct: 215 IEDHP--EVPCPYDYIKIKV 232

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 95.1 bits (236), Expect = 1e-23
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 13/125 (10%)

Query: 1   VALKFQS-FEIENHDQ--CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
           V L+F+  F+IE+H +  C YDY++I+ G      ++G +CG K P  I +    ++I F
Sbjct: 205 VNLQFEDIFDIEDHPEVPCPYDYIKIKVG----PKVLGPFCGEKAPEPISTQSHSVLILF 260

Query: 58  VSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYE------CSCKIGYELHSDG 111
            SD S +  G+   +    +EC           +     Y        SC  GY++  D 
Sbjct: 261 HSDNSGENRGWRLSYRAAGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDN 320

Query: 112 KICLD 116
                
Sbjct: 321 VEMDT 325

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 76.2 bits (187), Expect = 8e-17
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 122 LNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLT 181
           LN   G + SP +PD Y  +    W I  P  +RI L F HF++E +      CEYD + 
Sbjct: 5   LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESS----YLCEYDYVK 60

Query: 182 VFS 184
           V +
Sbjct: 61  VET 63

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score =  143 bits (361), Expect = 6e-41
 Identities = 50/184 (27%), Positives = 72/184 (39%), Gaps = 44/184 (23%)

Query: 1   VALKFQSFEIENHDQ-CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVS 59
           +A+ F +F +E        D++EIRDG    SP++G + G  LPP I S   KL +KF S
Sbjct: 155 IAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKS 214

Query: 60  DGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           D    + GFSA +                                             CG
Sbjct: 215 DQIDTRSGFSAYWDGSSTG---------------------------------------CG 235

Query: 120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDN 179
           G L T +GT  SP++P  Y  +  C W + +       L F  F +E +     +C  D 
Sbjct: 236 GNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHH----PNCTLDY 291

Query: 180 LTVF 183
           L V+
Sbjct: 292 LAVY 295

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score =  137 bits (347), Expect = 5e-39
 Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 42/189 (22%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           + L F++F +E H  CT DY+E+ D        +G YCG  +PP + SSG  LM+ FV+D
Sbjct: 39  IHLMFETFHLEFHYNCTNDYLEVYDT--DSETSLGRYCGKSIPPSLTSSGNSLMLVFVTD 96

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
             +   GF   +                                     +      AC  
Sbjct: 97  SDLAYEGFLINY-------------------------------------EAISAATACLQ 119

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
                 GT TSP+FP+ Y  N  CI+ I       I+++FT+F +E       +   D L
Sbjct: 120 DYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEEAI---GNYYTDFL 176

Query: 181 TVFSKIGDS 189
            +     + 
Sbjct: 177 EIRDGGYEK 185

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score =  137 bits (346), Expect = 8e-39
 Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 44/184 (23%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
             L+F+ F +E+H  CT DY+ + DG + +S ++   CG + PP I+SSG  + IK  +D
Sbjct: 272 FELEFKDFHLEHHPNCTLDYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLRTD 331

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGG 120
              Q  GF A +                                                
Sbjct: 332 EGQQGRGFKAEY----------------------------------------RQTCENVV 351

Query: 121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNL 180
           I+N   G L S  +P+ Y +N+ C W I A     ++  F  FD+E +     +C  D L
Sbjct: 352 IVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEHHI----NCSTDYL 407

Query: 181 TVFS 184
            ++ 
Sbjct: 408 ELYD 411

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 83.4 bits (206), Expect = 4e-19
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V   F +F++E+H  C+ DY+E+ DG       +G YCG  LPP   ++ +KL +  ++D
Sbjct: 387 VNYTFLAFDLEHHINCSTDYLELYDG----PRQMGRYCGVDLPPPGSTTSSKLQVLLLTD 442

Query: 61  G-SVQKPGFSAIF 72
           G   ++ GF   +
Sbjct: 443 GVGRREKGFQMQW 455

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 81.5 bits (201), Expect = 1e-18
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 177
           CG IL    GT+ SP  P++Y     C W I+  P + I L F  F +E +     +C  
Sbjct: 1   CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFH----YNCTN 56

Query: 178 DNLTVF 183
           D L V+
Sbjct: 57  DYLEVY 62

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score =  128 bits (324), Expect = 2e-38
 Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP----DIKSSGTKLMIK 56
           + L F   +IE  + C YD V+I  G   +  + G             + +    KL + 
Sbjct: 35  IHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVI 94

Query: 57  FVSDGSVQKPGFSAIF---MKEFDECA-LEDHGCEHTCKNILGGYECSCKIGYELHSDGK 112
           F SD S ++            + +EC    D  C H C N +GGY CSC   Y LH D K
Sbjct: 95  FKSDFSNEERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMK 154

Query: 113 ICLD 116
            C  
Sbjct: 155 NCGV 158

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score = 75.2 bits (185), Expect = 1e-17
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 124 TPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVF 183
           T  G + SP++P  Y       W+I  P  Y I L FTH DIE +     +C YD++ + 
Sbjct: 3   TMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELS----ENCAYDSVQII 58

Query: 184 S 184
           S
Sbjct: 59  S 59

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens} Length = 149

 Score =  117 bits (295), Expect = 3e-34
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           + L F  F++E+   C  DYVEI D +      +G YCG +LP DI S+G  + +KF+SD
Sbjct: 45  IHLSFLDFDLEDDPGCLADYVEIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSD 104

Query: 61  GSVQKPGFSAIFMKEFDECALEDHGCE-----HTCKNILGGY 97
            SV   GF   +    D  +    G          KN L G 
Sbjct: 105 ASVTAGGFQIKY-VAMDPVSKSSQGKNTSTTSTGNKNFLAGR 145

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens} Length = 149

 Score = 84.8 bits (210), Expect = 2e-21
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 177
           CGG+   P     SP FP+ Y  N+ C W I      RI L+F  FD+E +      C  
Sbjct: 7   CGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDD----PGCLA 62

Query: 178 DNLTVF 183
           D + ++
Sbjct: 63  DYVEIY 68

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 170

 Score =  115 bits (288), Expect = 6e-33
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 10/128 (7%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP----DIKSSGTKLMIK 56
           + L F  F++E    C YD+V++  G    + + G                S G+ L I 
Sbjct: 42  LRLYFTHFDLELSHLCEYDFVKLSSGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDIT 101

Query: 57  FVSDGSVQKPGFSAIF---MKEFDECAL---EDHGCEHTCKNILGGYECSCKIGYELHSD 110
           F SD S +KP          ++ DEC +   E   C+H C N LGG+ CSC+ GY LH +
Sbjct: 102 FRSDYSNEKPFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRN 161

Query: 111 GKICLDAC 118
            + C +  
Sbjct: 162 KRTCSEQS 169

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 170

 Score = 79.6 bits (196), Expect = 3e-19
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 117 ACGGILNTP-NGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSC 175
             G     P  G L SP FP  Y  ++   W + APP YR+ L FTHFD+E +      C
Sbjct: 2   PLGPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS----HLC 57

Query: 176 EYDNLTVFS 184
           EYD + + S
Sbjct: 58  EYDFVKLSS 66

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Length = 450

 Score =  104 bits (261), Expect = 7e-27
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 6/114 (5%)

Query: 1   VALKFQSFEIENHDQ------CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLM 54
           + L+F+SF++E          C YD +EI DG     P IG YCG K P  I+SS   L 
Sbjct: 49  IILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILS 108

Query: 55  IKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELH 108
           + F +D ++ K GFSA +       + +    E         +        +  
Sbjct: 109 MVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSDQITASSQYS 162

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Length = 450

 Score = 92.0 bits (228), Expect = 3e-22
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSS- 174
             C     TP+G + SP FP+ Y  +  C + + AP    I L F  FD+E ++      
Sbjct: 9   PECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGM 68

Query: 175 -CEYDNLTVFSKIGDS 189
            C YD L ++    D 
Sbjct: 69  FCRYDRLEIWDGFPDV 84

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Length = 460

 Score =  101 bits (252), Expect = 1e-25
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGN--NLFQS 173
           + C     +PNGT+ SP FP+ Y  N  C + I+A P+  I L F  FD+E +   + + 
Sbjct: 6   EDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEG 65

Query: 174 SCEYDNLTVFSKIGDS 189
            C+YD L ++  I   
Sbjct: 66  DCKYDWLDIWDGIPHV 81

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Length = 460

 Score = 90.1 bits (223), Expect = 1e-21
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 6/98 (6%)

Query: 1   VALKFQSFEIEN------HDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLM 54
           + L+F  F++E+         C YD+++I DG     P+IG YCG K P +++SS   L 
Sbjct: 46  IILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILS 105

Query: 55  IKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKN 92
           + F +D +V K GFSA +     E              
Sbjct: 106 LTFHTDMAVAKDGFSARYYLVHQEPLENFQCNVPLGME 143

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1 Length = 114

 Score = 91.2 bits (227), Expect = 2e-24
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V +  Q  ++     C  + +EI DG  P SP++G  C      D +SSG+ + +K++ +
Sbjct: 43  VRVSIQYLQLN----CNKESLEIIDGL-PGSPVLGKICEGS-LMDYRSSGSIMTVKYIRE 96

Query: 61  GSVQKPGFSAIFMKE 75
                  +  ++ ++
Sbjct: 97  PEHPASFYEVLYFQD 111

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1 Length = 114

 Score = 69.7 bits (171), Expect = 5e-16
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 13/66 (19%)

Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 177
           CGGIL   +G + +      Y     C+W I  PP+Y + ++  +  +         C  
Sbjct: 10  CGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN--------CNK 56

Query: 178 DNLTVF 183
           ++L + 
Sbjct: 57  ESLEII 62

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A Length = 115

 Score = 90.1 bits (224), Expect = 8e-24
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 1   VALKFQS-FEIENHDQ--CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
           V L+F+  F+IE+H +  C YDY++I+ G    S + G +CG K P  I +    + I F
Sbjct: 43  VTLQFEDIFDIEDHPEVPCPYDYIKIKAG----SKVWGPFCGEKSPEPISTQSHSIQILF 98

Query: 58  VSDGSVQKPGFSAIF 72
            SD S +  G+   +
Sbjct: 99  RSDNSGENRGWRLSY 113

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A Length = 115

 Score = 76.6 bits (189), Expect = 1e-18
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 115 LDACGGILNT-PNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTH-FDIEGNNLFQ 172
           +  C G L T   GT+TSP +P+ Y K+  C + I     + ++L F   FDIE +   +
Sbjct: 1   MVECSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDH--PE 58

Query: 173 SSCEYDNLTVF 183
             C YD + + 
Sbjct: 59  VPCPYDYIKIK 69

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 116

 Score = 82.5 bits (204), Expect = 6e-21
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           V +      +     C  +YVE+ DG     P  G  C         S+   + IK+   
Sbjct: 42  VRMAIPYLNLA----CGKEYVEVFDGL-LSGPSYGKLCA-GAAIVFLSTANTMTIKYNRI 95

Query: 61  GSVQKPGFSAIF 72
                  F   F
Sbjct: 96  SGNSSSPFLIYF 107

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 116

 Score = 72.8 bits (179), Expect = 3e-17
 Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 13/74 (17%)

Query: 116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSC 175
           D CG ++   +G++++            C W I+  P  ++ +   + ++         C
Sbjct: 7   DECGRVIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA--------C 53

Query: 176 EYDNLTVFSKIGDS 189
             + + VF  +   
Sbjct: 54  GKEYVEVFDGLLSG 67

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 109

 Score = 79.0 bits (195), Expect = 1e-19
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 1   VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSD 60
           + +   +  +     C  +YVE+ +G AP S  +G +C       +    + + +K+  D
Sbjct: 39  LLVSIPTLNLT----CGKEYVEVLEG-APGSKSLGKFCE--GLSILNRGSSGMTVKYKRD 91

Query: 61  GSVQKPGFSAIF 72
                  +  IF
Sbjct: 92  SGHPASPYEIIF 103

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 109

 Score = 74.3 bits (183), Expect = 6e-18
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 13/73 (17%)

Query: 117 ACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCE 176
           ACGG L    GT+ +   P        C+W +   P+Y++ ++    ++         C 
Sbjct: 5   ACGGRLTDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLT--------CG 51

Query: 177 YDNLTVFSKIGDS 189
            + + V      S
Sbjct: 52  KEYVEVLEGAPGS 64

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 60.4 bits (147), Expect = 9e-13
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 77  DECALEDHGC-EHTCKNILGGYECSCKIGYELHSDGKICLD 116
           DEC+L+   C    CKNI G +EC C  GY  +   K C D
Sbjct: 4   DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCED 44

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKI--GYELHSDGKICLD 116
           DEC+  ++ C   C N  GGY C C    G++L  D K C  
Sbjct: 46  DECS--ENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEV 85

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55

 Score = 58.5 bits (142), Expect = 2e-12
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDA----CGGI 121
             C+L++  C+  C        CSC  GY L  +GK C+      CG  
Sbjct: 2   KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQ 50

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51

 Score = 58.1 bits (141), Expect = 2e-12
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 79  CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDA----CGGIL 122
           C+L++ GC+  C+       CSC  GY L  D K C+      CG   
Sbjct: 1   CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPCGKFT 48

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53

 Score = 56.3 bits (136), Expect = 1e-11
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 77  DECALEDHG--------CEHTCKNILGGYECSCKIGYELHSDGKIC 114
           DECA             C+H C N +GGY CSC+ GYEL  D   C
Sbjct: 5   DECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 57.0 bits (138), Expect = 3e-11
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
           +EC   + GC + C ++  GYEC C  G++L +  + C D
Sbjct: 30  NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR-CED 68

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
           DEC  +   C   C N+ GGY+C C+ G++L    K C
Sbjct: 70  DECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 12/42 (28%), Positives = 16/42 (38%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
           +EC          C N  G Y C C   +EL+     C+D  
Sbjct: 4   NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTR 45

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 77  DECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKIC 114
           DEC      C+   C N  G ++C C  GY L+ D ++C
Sbjct: 123 DECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 4/40 (10%), Positives = 7/40 (17%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
            +                    C    G+  +    I  D
Sbjct: 82  GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILED 121

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 6/42 (14%), Positives = 10/42 (23%), Gaps = 3/42 (7%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
                     +   +   G   CS +IG  +      C    
Sbjct: 45  RSGN---CYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGK 83

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 55.4 bits (134), Expect = 6e-11
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 77  DECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKICL 115
           DEC  +   C    C N  G Y C C  G++L  +   C+
Sbjct: 47  DECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 77  DECALEDHGCEH-TCKNILGGYECSCKIGYEL-HSDGKICLD 116
           DEC +    C    C N  G +EC C  GYE      K C+D
Sbjct: 4   DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMD 45

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69

 Score = 54.8 bits (132), Expect = 8e-11
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 74  KEFDECALEDHGCEHTCKNILGG-YECSCKIGYELHSDGKICL----DACGGI 121
            +   C  E+ GCE  C +  G    C C  GY L +DG  C       CG I
Sbjct: 3   DDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKI 55

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59

 Score = 52.8 bits (127), Expect = 3e-10
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 79  CALEDHGCEHTCKNILGG-YECSCKIGYELHSDGKICLDA----CGGILNTPNGTLT 130
           C +++  CE  CKN       CSC  GY L  + K C  A    CG +  +    LT
Sbjct: 2   CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSKLT 58

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 55.2 bits (132), Expect = 2e-09
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
           + C + + GC   C+ I G  +C+C  GY L  DG+ C
Sbjct: 4   ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTC 41

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 72  FMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
                + C   + GC H C      Y C+C  G+    +   C
Sbjct: 343 QPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRK-INSHAC 384

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
           +ECA E+  C   C N  G ++C C+ GYEL  D + C  
Sbjct: 45  NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKA 83

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 77  DECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKICL 115
           DEC +    C++  C N  G ++C C  G  L + G+ICL
Sbjct: 108 DECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 51.2 bits (123), Expect = 7e-09
 Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
           DEC          CKN  G + C C     L     IC++  
Sbjct: 5   DECE-SSPCINGVCKNSPGSFICECSSESTLDPTKTICIETI 45

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
           DEC++ +     TCKN++GG+EC+C+ G+E       C
Sbjct: 45  DECSVGNPCGNGTCKNVIGGFECTCEEGFEP-GPMMTC 81

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
           DEC   D      C N  G Y C C  GY L   G  C+D
Sbjct: 6   DECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVD 43

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53

 Score = 50.1 bits (120), Expect = 3e-09
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 79  CALEDHGCEHTCKNILGG-YECSCKIGYELHSDGKICLDA----CGGI 121
           C  E+ GCE  C +  G    C C  GY L +DG  C       CG I
Sbjct: 2   CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKI 49

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 76  FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD----ACG 119
           F  C+L++ GC H C   +G   CSC  GY+L  D   C       CG
Sbjct: 54  FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCG 101

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 51.4 bits (123), Expect = 6e-09
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 77  DECALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKICLDAC 118
           DEC+   H C+    C N +G Y C C+ G++            
Sbjct: 97  DECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDT 140

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 11/51 (21%)

Query: 77  DECALEDHGC---EHTCKNILGGYECSCKIGYELHS--------DGKICLD 116
           +ECA            C N  G Y+C C  GYE  S            C D
Sbjct: 45  NECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQD 95

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELH-SDGKIC 114
           DEC      C   C N+ G +EC C     L    G  C
Sbjct: 81  DECE-NGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 6/48 (12%)

Query: 77  DECALEDHGCEHTCKNI-LGGYECSCKIGYELHSDGK---ICLDACGG 120
           D C      CE+ C+ +    Y C C  G+                  
Sbjct: 5   DPCF--RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTA 50

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 12/40 (30%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
            +       C   C        C C  GY L  DG IC D
Sbjct: 42  CQMFCNQTACPADCDP-NTQASCECPEGYIL-DDGFICTD 79

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
           +EC   + GC H C ++  GYEC C  G++L +  +  
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE 38

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 74  KEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACG 119
           ++ DEC  +   C   C N+ GGY+C C+ G++L    K C     
Sbjct: 38  EDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 82

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query: 47  KSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYE 106
           K S  + +I       +     +   +   + CA E+ GC H C     G  C+C IG+E
Sbjct: 549 KRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFE 608

Query: 107 LHSDGKICL 115
           L SD K C+
Sbjct: 609 LISDMKTCI 617

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
           +ECA E+  C   C N  G ++C C+ GYEL  D + C  
Sbjct: 2   NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKA 40

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 77  DECALE-DHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNG 127
           +EC  E   GC+H C      Y CSC  GY L  D K C+            
Sbjct: 3   NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTS 54

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
             C+L++  C+  C        CSC  GY L  +GK C+ 
Sbjct: 82  KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP 121

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
             C L  +     C N+ G Y C C  G+    +  +CL 
Sbjct: 140 TACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLG 179

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
             C+L++  C+  C        CSC  GY L  +GK C    
Sbjct: 82  KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC-IPT 122

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 79  CALEDHGCEHTCKNI--LGGYECSCKIGYELHSDGKICLDAC 118
           C +++ GC H C        Y+C+C  G +L  +GK C D  
Sbjct: 270 CGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGN 311

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Length = 285

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 77  DECALEDHGC--EHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPN 126
             CA   H C     C++   G+ C C   Y    +G+ C+           
Sbjct: 6   QTCANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQCVAEGSPQRVNGK 55

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 77  DECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLT 130
           +   L + GC++ C            + C+C  G  L  D + CL      + T   +  
Sbjct: 665 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTV 724

Query: 131 SPSFPDLYIKNK 142
                   ++ +
Sbjct: 725 RLKVSSTAVRTQ 736

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 74  KEFDECALEDHGCEH--TCKNILGGYECSCKIGYE 106
           ++ DEC+L  + CEH   C N LG +EC C  GY 
Sbjct: 3   QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT 37

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 38.1 bits (88), Expect = 8e-04
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 6/45 (13%)

Query: 77  DECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICL 115
           +   L + GC++ C            + C+C  G  L  D + CL
Sbjct: 271 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
3dem_A	278	Complement factor MAsp-3; complement system, innat	100.0
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	100.0
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	100.0
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	100.0
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	100.0
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	100.0
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	100.0
1szb_A	170	Mannose binding lectin-associated serine protease-	99.91
1nzi_A	159	Complement C1S component; calcium, innate immunity	99.89
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	99.86
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	99.81
1szb_A	170	Mannose binding lectin-associated serine protease-	99.8
1nzi_A	159	Complement C1S component; calcium, innate immunity	99.79
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	99.79
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.74
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.72
3dem_A	278	Complement factor MAsp-3; complement system, innat	99.72
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	99.72
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	99.71
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	99.71
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	99.68
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	99.67
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	99.65
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	99.64
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.64
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	99.64
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	99.63
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.63
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	99.62
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.6
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	98.21
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.17
2wph_E	59	Coagulation factor IXA light chain; serine proteas	98.02
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	98.02
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	98.0
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.96
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.37
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	97.33
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.96
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	96.8
1aut_L	114	Activated protein C; serine proteinase, plasma cal	96.75
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.68
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	96.68
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	96.68
2vh0_B	134	Activated factor XA light chain; serine protease,	96.62
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.44
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.43
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.4
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	96.38
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.35
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	96.35
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	96.27
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.17
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.16
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	96.09
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	95.85
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	95.83
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	95.68
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.63
2bou_A	143	EGF-like module containing mucin-like hormone rece	95.2
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	95.01
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	94.88
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	94.72
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	94.72
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	94.46
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	94.41
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	94.02
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.93
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	93.74
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	93.47
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	92.91
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	92.68
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	92.61
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	92.16
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	91.89
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	91.65
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	89.94
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	89.84
2bou_A	143	EGF-like module containing mucin-like hormone rece	88.94
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	88.05
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	86.41
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	85.37
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	84.86
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	84.79
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	84.5
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	83.29
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	82.76
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	81.15
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	81.09
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	80.59

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.6e-42  Score=260.13  Aligned_cols=181  Identities=34%  Similarity=0.753  Sum_probs=161.0

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCC--------CceEecCCEEEEEEecCCCCCC--CCceE
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLP--------PDIKSSGTKLMIKFVSDGSVQK--PGFSA   70 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p--------~~i~s~~~~l~v~f~sd~~~~~--~GF~~   70 (193)
                      |+|+|.+|+||.+..|.+|||+|+||.    ..++++||...|        ..++|+++.|+|+|++|.+...  .||+|
T Consensus        39 I~L~F~~f~le~~~~C~~D~l~v~dg~----~~~~~~CG~~~~~~~~~~~~~~~~S~~n~l~v~F~Sd~~~~~~~~GF~~  114 (278)
T 3dem_A           39 IKLYFMHFNLESSYLCEYDYVKVETED----QVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDA  114 (278)
T ss_dssp             EEEEEEEEECCCCGGGCSSEEEEECSS----CEEEEECSBSSSSSSCCCTTCCEECSSSEEEEEEEECSCCCSCCCEEEE
T ss_pred             EEEEEEEEEeCCCCCCCCcEEEEecCC----cccceEcCCcCCCcccCCCCccEEecCCeEEEEEecCcccccccceeEE
Confidence            689999999999889999999999974    468999998753        6899999999999999988764  79999


Q ss_pred             eccc-ccccccCCC---CCccceeecCCCceEEeccCCeEEccCCcccccCCCCC-cccCCCCccCCCCCCCCCCCCceE
Q psy11864         71 IFMK-EFDECALED---HGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGI-LNTPNGTLTSPSFPDLYIKNKTCI  145 (193)
Q Consensus        71 ~~~~-~~~~c~~~~---~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~~C~~~-~~~~~g~i~Sp~~p~~y~~~~~C~  145 (193)
                      .|.+ ..++|....   ..|.+.|.+..+++.|.|.+||.++.+.+.|...|++. ++..+|.|+||+||.+||++.+|.
T Consensus       115 ~y~~~~~~~C~~~~~~~~~c~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~  194 (278)
T 3dem_A          115 HYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECL  194 (278)
T ss_dssp             EEEEEECCTTTC-----CCCSSEEEEETTEEEEECCTTCEECTTSSCEECCCCCCCBCSSEEEEESTTTTSCCCSSCEEE
T ss_pred             EEEEeccccCCCCCCCcccCCcCcCCccCCcEEEeCCcceeccCCCCCcccCCCceecCCccceeCCCCCCCCCCcCeEE
Confidence            9987 567787654   37999999999999999999999999999999999985 588899999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEee-EEeecCCCCCCCCCCcEEEEEeCCC
Q psy11864        146 WEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEYDNLTVFSKIG  187 (193)
Q Consensus       146 w~I~~~~~~~i~l~F~~-f~l~~~~~~~~~C~~D~l~I~dg~~  187 (193)
                      |.|+++++++|.|+|.+ |+||...  ...|.+|||+||||..
T Consensus       195 w~i~~~~g~~i~l~f~~~f~le~~~--~~~C~~D~l~i~dg~~  235 (278)
T 3dem_A          195 YTIELEEGFMVNLQFEDIFDIEDHP--EVPCPYDYIKIKVGPK  235 (278)
T ss_dssp             EEEECCTTCCEEEEECSCCBBCCCS--SSSSSSCEEEEEETTE
T ss_pred             EEEEeCCCcEEEEEEccccccccCC--CCCCCCCEEEEecCCc
Confidence            99999999999999997 9999642  2479999999999963

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=100.00  E-value=1.3e-42  Score=262.47  Aligned_cols=180  Identities=35%  Similarity=0.756  Sum_probs=153.9

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCcc------CC--CceEecCCEEEEEEecCCCCCC--CCceE
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYK------LP--PDIKSSGTKLMIKFVSDGSVQK--PGFSA   70 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~------~p--~~i~s~~~~l~v~f~sd~~~~~--~GF~~   70 (193)
                      |+|+|.+|+||.+..|.+|||+|+||.    ..++++||..      .|  ..++|+++.|+|+|++|.....  .||+|
T Consensus        38 I~L~F~~f~le~~~~C~~D~l~I~dg~----~~~~~~CG~~~~~~~~~P~~~~~~S~~n~l~v~F~Sd~s~~~~~~GF~a  113 (286)
T 1nt0_A           38 LRLYFTHFNLELSYRCEYDFVKLTSGT----KVLATLCGQESTDTERAPGNDTFYSLGPSLKVTFHSDYSNEKPFTGFEA  113 (286)
T ss_dssp             EEEEEEEEECCCCGGGCSSEEEEEETT----EEEEEECSSSCCSSCBCCTTCEEECSSSEEEEEEECCC----CCCEEEE
T ss_pred             EEEEEEEEEecCCCCCCCcEEEEECCC----eEeceECCCcCCCcccCCCCceEEeCCCEEEEEEEeCCcCCcCcccEEE
Confidence            689999999999888999999999984    5789999986      57  7899999999999999998775  99999


Q ss_pred             eccc-ccccccCCC---CCccceeecCCCceEEeccCCeEEccCCcccccCCCCC-cccCCCCccCCCCCCCCCCCCceE
Q psy11864         71 IFMK-EFDECALED---HGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGI-LNTPNGTLTSPSFPDLYIKNKTCI  145 (193)
Q Consensus        71 ~~~~-~~~~c~~~~---~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~~C~~~-~~~~~g~i~Sp~~p~~y~~~~~C~  145 (193)
                      .|.+ ..++|..+.   ..|.+.|.+..+++.|.|.+||.|..+++.|...|++. +...+|.|+||+||..||++.+|.
T Consensus       114 ~y~~~~~~~C~~~~~~~~~c~~~C~n~~g~~~csC~~Gy~L~~d~~~C~~~Cg~~~~~~~~G~i~SP~yP~~Yp~~~~C~  193 (286)
T 1nt0_A          114 FYAAEDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCA  193 (286)
T ss_dssp             EEEEEECCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEEECCEEEEECSSSEEEECTTTTSCCCSSCEEE
T ss_pred             EEEeccCCccCCCCCCcccCCCccccccCceEeecCCCceeccCCCCccccccCceecCCceEEeCCCCCCCCCCCCEEE
Confidence            9987 457787543   35899999999999999999999999999999999997 788999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEe-eEEeecCCCCCCCCCCcEEEEEeCC
Q psy11864        146 WEIVAPPQYRISLNFT-HFDIEGNNLFQSSCEYDNLTVFSKI  186 (193)
Q Consensus       146 w~I~~~~~~~i~l~F~-~f~l~~~~~~~~~C~~D~l~I~dg~  186 (193)
                      |.|+++++++|.|+|. .|+||...  ...|.+|+|+||||.
T Consensus       194 w~I~~~~g~~I~l~f~~~f~le~~~--~~~C~~D~l~i~dg~  233 (286)
T 1nt0_A          194 YNIRLEEGFSITLDFVESFDVEMHP--EAQCPYDSLKIQTDK  233 (286)
T ss_dssp             EEEECCSSCEEEEEECSCCBBCCC------C--CEEEEECSS
T ss_pred             EEEECCCceEEEEEEeceEEeccCC--CCCCCCcEEEEEeCC
Confidence            9999999999999996 79999741  138999999999995

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=235.52  Aligned_cols=181  Identities=34%  Similarity=0.743  Sum_probs=153.9

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCC--------CceEecCCEEEEEEecCCCCCC--CCceE
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLP--------PDIKSSGTKLMIKFVSDGSVQK--PGFSA   70 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p--------~~i~s~~~~l~v~f~sd~~~~~--~GF~~   70 (193)
                      |+|+|.+|+||.+..|.+|||+|++|.    ..++++||...|        ..++|++|.|+|+|+||.+...  .||+|
T Consensus        39 I~l~F~~f~lE~~~~C~~D~l~i~dg~----~~~~~~cG~~~~~~~~~~~~~~~~S~~n~l~v~F~SD~s~~~~~~GF~a  114 (361)
T 4aqb_A           39 IKLYFMHFNLESSYLCEYDYVKVETED----QVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDA  114 (361)
T ss_dssp             EEEEEEEEECCCCGGGCSSEEEEECSS----CEEEEECSBSSSSSSCCCTTCCEECSSSEEEEEEEECSCCCSCCCEEEE
T ss_pred             EEEEEeEEEecCCCCCCceEEEEccCC----cccceeeccccCCCccCCCccceeccCCEeEEEEEeCCccccccccccc
Confidence            689999999999999999999999974    345666765432        3599999999999999988776  49999


Q ss_pred             eccc-ccccccCC---CCCccceeecCCCceEEeccCCeEEccCCcccccC-CCCCcccCCCCccCCCCCCCCCCCCceE
Q psy11864         71 IFMK-EFDECALE---DHGCEHTCKNILGGYECSCKIGYELHSDGKICLDA-CGGILNTPNGTLTSPSFPDLYIKNKTCI  145 (193)
Q Consensus        71 ~~~~-~~~~c~~~---~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~~-C~~~~~~~~g~i~Sp~~p~~y~~~~~C~  145 (193)
                      +|.+ ..++|...   ...|.+.|.+..+++.|.|..|+.+..+...|... |++.++..+|.|+||+||.+||++.+|.
T Consensus       115 ~y~~~~~~~c~~~~~~~~~~~~~c~n~~g~~~csC~~g~~l~~~~~~~~~~~c~~~~~~~~G~i~SP~yP~~Yp~~~~C~  194 (361)
T 4aqb_A          115 HYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECL  194 (361)
T ss_dssp             EEEEEECCGGGTGGGSSSCCSSEEEEETTEEEEECCTTCEECTTSSCEECCCCCCCBCSSEEEEESTTTTSCCCSSCEEE
T ss_pred             ceeeccccccccccccCCCCCccCCccCCCceeccCCCeEEeccccccccccccceEeCCCcEEecCCCCCCCCCCceee
Confidence            9987 34566543   45788999999999999999999999998888765 5566788999999999999999999999


Q ss_pred             EEEEcCCCCeEEEEEee-EEeecCCCCCCCCCCcEEEEEeCCC
Q psy11864        146 WEIVAPPQYRISLNFTH-FDIEGNNLFQSSCEYDNLTVFSKIG  187 (193)
Q Consensus       146 w~I~~~~~~~i~l~F~~-f~l~~~~~~~~~C~~D~l~I~dg~~  187 (193)
                      |.|.++++++|.|+|.+ |+++...  ...|.+|||+|+||..
T Consensus       195 w~i~~~~g~~i~l~f~~~~~~e~~~--~~~C~~D~l~i~dg~~  235 (361)
T 4aqb_A          195 YTIELEEGFMVNLQFEDIFDIEDHP--EVPCPYDYIKIKVGPK  235 (361)
T ss_dssp             EEEECCTTCEEEEEECSCCBBCCCS--SSSSSSSEEEEEETTE
T ss_pred             EEeeeccCcEEEEEEeecccccCCc--cCccCCCeEEEeeCCe
Confidence            99999999999999987 6666532  2479999999999964

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=100.00  E-value=2e-35  Score=241.71  Aligned_cols=152  Identities=33%  Similarity=0.622  Sum_probs=134.0

Q ss_pred             CEEEee-EEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecccccccc
Q psy11864          1 VALKFQ-SFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDEC   79 (193)
Q Consensus         1 I~l~F~-~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~~~~~c   79 (193)
                      |+|+|. .|+||. .+|.+|||+|+||....++++++|||...|..|+|++|.|+|+|+||.+..++||.+.|++...  
T Consensus        49 I~L~F~~~f~le~-~~C~~Dyl~I~dG~~~~~~~lg~~CG~~~p~~i~S~~n~l~v~F~SD~s~~~~GF~a~y~~~~~--  125 (577)
T 4gz9_A           49 IMINFNPHFDLED-RDCKYDYVEVIDGENEGGRLWGKFCGKIAPSPVVSSGPFLFIKFVSDYETHGAGFSIRYEIFKR--  125 (577)
T ss_dssp             EEEEECSCCBCCC-GGGTSSEEEEEESSSTTSEEEEEECSSSCCCCEECSSSEEEEEEECCSSCCCCBCEEEEEECCC--
T ss_pred             EEEEEEeeeeecC-CCCCccEEEEEeCCCCCCcEEEEecCCCCCCCEEEeCCeEEEEEEECCCCCCCCeEEEEEEeec--
Confidence            679996 799996 4699999999999988889999999999999999999999999999999999999999976311  


Q ss_pred             cCCCCCccceeecCCCceEEeccCCeEEccCCcccccCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEE
Q psy11864         80 ALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLN  159 (193)
Q Consensus        80 ~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~  159 (193)
                                                         ...|++.++..+|.|+||+||..||++++|.|.|.+|++++|.|+
T Consensus       126 -----------------------------------~~~C~~~~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~g~~I~L~  170 (577)
T 4gz9_A          126 -----------------------------------GPECSQNYTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILE  170 (577)
T ss_dssp             -----------------------------------CCEEEEEECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEE
T ss_pred             -----------------------------------CcccceeecCCCccccCCCCCCCCCCCceEEEEEEECCCCEEEEE
Confidence                                               235777888889999999999999999999999999999999999


Q ss_pred             EeeEEeecCCC--CCCCCCCcEEEEEeCCCCcc
Q psy11864        160 FTHFDIEGNNL--FQSSCEYDNLTVFSKIGDSF  190 (193)
Q Consensus       160 F~~f~l~~~~~--~~~~C~~D~l~I~dg~~~~~  190 (193)
                      |.+|+||....  ....|.+|||+||||.+...
T Consensus       171 F~~F~lE~~~~~~~~~~C~~D~l~I~dG~~~~~  203 (577)
T 4gz9_A          171 FESFDLEQDSNPPGGMFCRYDRLEIWDGFPEVG  203 (577)
T ss_dssp             EEEEECCCCCSCSTTCCCCSSEEEEESSSTTTS
T ss_pred             EEEEEeeecCCCCCCCccCccEEEEEcCCCCCC
Confidence            99999997541  11359999999999987654

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=100.00  E-value=8.8e-35  Score=232.74  Aligned_cols=142  Identities=32%  Similarity=0.675  Sum_probs=130.7

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEeccccccccc
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDECA   80 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~~~~~c~   80 (193)
                      |+|+|.+|+||.+..|.+|+|+||||....+++++++||...|..++|+++.|+|+|++|.....+||+|.|.+      
T Consensus       272 i~l~f~~f~le~~~~C~~D~l~i~dg~~~~~~~l~~~CG~~~p~~i~S~~n~l~v~f~sd~~~~~~GF~a~y~~------  345 (457)
T 3kq4_B          272 FELEFKDFHLEHHPNCTLDYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLRTDEGQQGRGFKAEYRQ------  345 (457)
T ss_dssp             EEEEEEECCCCCCTTCCSSEEEEEESSSTTSEEEEEECSSCCCCCEECSSSCEEEEEECCSSCCCCCCEEEEEE------
T ss_pred             EEEEEEeeeecCCCCcCCCEEEEEeCCCCCchhhhhhcCCcCCCCEEecCCEEEEEEEeCCcccCCeEEEEEEe------
Confidence            68999999999988999999999999988888999999999999999999999999999999999999999964      


Q ss_pred             CCCCCccceeecCCCceEEeccCCeEEccCCcccccCCCCCc--ccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEE
Q psy11864         81 LEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGIL--NTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISL  158 (193)
Q Consensus        81 ~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~~C~~~~--~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l  158 (193)
                                                          .|++.+  ....|.|.||+||..||++.+|.|+|+++++++|+|
T Consensus       346 ------------------------------------~C~~~~~~~~~~G~i~Sp~yP~~Yp~~~~C~w~i~~~~g~~i~l  389 (457)
T 3kq4_B          346 ------------------------------------TCENVVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNY  389 (457)
T ss_dssp             ------------------------------------CCTTEEECSCSSEEEECTTTTSCCCSSCEEEEEEECSTTCCCEE
T ss_pred             ------------------------------------ecCCcccccceeeEEecCCCCccCCCCCceEEEEEcCCCCEEEE
Confidence                                                466655  345699999999999999999999999999999999


Q ss_pred             EEeeEEeecCCCCCCCCCCcEEEEEeCCCC
Q psy11864        159 NFTHFDIEGNNLFQSSCEYDNLTVFSKIGD  188 (193)
Q Consensus       159 ~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~  188 (193)
                      +|..|+||...    .|.+|||+||||.+.
T Consensus       390 ~f~~f~le~~~----~C~~D~l~i~dg~~~  415 (457)
T 3kq4_B          390 TFLAFDLEHHI----NCSTDYLELYDGPRQ  415 (457)
T ss_dssp             EEEEEECCCCT----TTTSSEEEEEETTEE
T ss_pred             EEeEEEEccCC----CCCceEEEEEeCCcc
Confidence            99999999865    899999999999753

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=100.00  E-value=8.5e-35  Score=232.83  Aligned_cols=147  Identities=34%  Similarity=0.643  Sum_probs=136.3

Q ss_pred             CEEEeeEEeecCCC-CCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecccccccc
Q psy11864          1 VALKFQSFEIENHD-QCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDEC   79 (193)
Q Consensus         1 I~l~F~~f~le~~~-~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~~~~~c   79 (193)
                      |+|+|.+|+||... .|.+|+|+|+||....+++++++||...|..++|++|.|+|+|++|.....+||++.|.+.    
T Consensus       155 i~l~f~~f~le~~~~~C~~D~l~i~dg~~~~s~~~~~~cG~~~p~~~~S~~n~l~v~F~sd~~~~~~GF~~~y~~~----  230 (457)
T 3kq4_B          155 IAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKSDQIDTRSGFSAYWDGS----  230 (457)
T ss_dssp             CEEEEEEEECCCCBTTBCSSEEEEESSSSTTSCEEEEECSSSCCCCEECSSSCEEEEEECCSSCCCCEEEEEEECC----
T ss_pred             EEEEEEEEEeecCCCCcccceEEEecCCCCCcceeeeecCCCCCCCeEEcCCEEEEEEEeCCCCCcCCEEEEeccc----
Confidence            78999999999865 8999999999998888899999999999999999999999999999999999999999752    


Q ss_pred             cCCCCCccceeecCCCceEEeccCCeEEccCCcccccCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEE
Q psy11864         80 ALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLN  159 (193)
Q Consensus        80 ~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~  159 (193)
                                                         ...|++.+...+|.|+||+||..||++.+|+|.|.++++++|.|+
T Consensus       231 -----------------------------------~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~~~~i~l~  275 (457)
T 3kq4_B          231 -----------------------------------STGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELE  275 (457)
T ss_dssp             -----------------------------------CCCCEECCCSSEEEEECTTTTSCCCSSCEEEEEECCSTTCCEEEE
T ss_pred             -----------------------------------cCCCCCeEccCcceeccCCCCCCCCCCCEEEEEEEeCCCCEEEEE
Confidence                                               257888888889999999999999999999999999999999999


Q ss_pred             EeeEEeecCCCCCCCCCCcEEEEEeCCCCcc
Q psy11864        160 FTHFDIEGNNLFQSSCEYDNLTVFSKIGDSF  190 (193)
Q Consensus       160 F~~f~l~~~~~~~~~C~~D~l~I~dg~~~~~  190 (193)
                      |.+|+||...    .|.+|+|+||||.+...
T Consensus       276 f~~f~le~~~----~C~~D~l~i~dg~~~~~  302 (457)
T 3kq4_B          276 FKDFHLEHHP----NCTLDYLAVYDGPSSNS  302 (457)
T ss_dssp             EEECCCCCCT----TCCSSEEEEEESSSTTS
T ss_pred             EEeeeecCCC----CcCCCEEEEEeCCCCCc
Confidence            9999999876    89999999999987654

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=100.00  E-value=7.1e-34  Score=233.23  Aligned_cols=152  Identities=39%  Similarity=0.733  Sum_probs=125.1

Q ss_pred             CEEEee-EEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecccccccc
Q psy11864          1 VALKFQ-SFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKEFDEC   79 (193)
Q Consensus         1 I~l~F~-~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~~~~~c   79 (193)
                      |+|.|. +|+||. ..|.+|||+|+||....++++++|||...|..|+|+++.|+|+|+||.+...+||+++|.....  
T Consensus        46 I~l~F~~~f~le~-~~C~~D~l~i~dg~~~~~~~l~~~CG~~~p~~i~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~~~--  122 (579)
T 2qqk_A           46 IVLNFNPHFEIEK-HDCKYDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTSDYARQGAGFSLRYEIFKT--  122 (579)
T ss_dssp             EEEEECSCCBCCC-TTSSSSEEEEEESSSTTSEEEEEECTTSCCCCEECSSSEEEEEEECC---CCCBCEEEEEEECC--
T ss_pred             EEEEEeccccccc-CCCCeeEEEEEeCCCCCcceeeeECCCCCCCCEEecCCEEEEEEEECCCCCCCceEEEEEEccc--
Confidence            679999 899996 5799999999999887788999999999999999999999999999999999999999975210  


Q ss_pred             cCCCCCccceeecCCCceEEeccCCeEEccCCcccccCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEE
Q psy11864         80 ALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLN  159 (193)
Q Consensus        80 ~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~  159 (193)
                                                        ....|++.+...+|.|+||+||..||++.+|.|.|.++++++|.|.
T Consensus       123 ----------------------------------~~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~  168 (579)
T 2qqk_A          123 ----------------------------------GSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQ  168 (579)
T ss_dssp             ----------------------------------CCCCCCCEECCSEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEE
T ss_pred             ----------------------------------ccccccceeccCCceecCCCCcccCCCCCeEEEEEEcCCCCEEEEE
Confidence                                              1245889898899999999999999999999999999999999999


Q ss_pred             EeeEEeecCCC--CCCCCCCcEEEEEeCCCCc
Q psy11864        160 FTHFDIEGNNL--FQSSCEYDNLTVFSKIGDS  189 (193)
Q Consensus       160 F~~f~l~~~~~--~~~~C~~D~l~I~dg~~~~  189 (193)
                      |..|+||....  ....|.+|||+||||.+..
T Consensus       169 F~~f~le~~~~~~~~~~C~~D~l~I~dg~~~~  200 (579)
T 2qqk_A          169 FLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHV  200 (579)
T ss_dssp             EEEEEC-------------CCEEEEESSSTTT
T ss_pred             EEEEEeecccccccCCCCCCEEEEEEeCCCCC
Confidence            99999997410  1138999999999998654

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.91  E-value=1.2e-23  Score=147.15  Aligned_cols=114  Identities=38%  Similarity=0.825  Sum_probs=101.4

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCcc------CC--CceEecCCEEEEEEecCCCCCC--CCceE
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYK------LP--PDIKSSGTKLMIKFVSDGSVQK--PGFSA   70 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~------~p--~~i~s~~~~l~v~f~sd~~~~~--~GF~~   70 (193)
                      |+|+|.+|+||.+..|.+|||+||||.    ..+++|||..      .|  ..++|+++.|+|+|+||.+...  .||.+
T Consensus        42 I~l~f~~f~le~~~~C~~D~l~i~dg~----~~~~~~CG~~~~~~~~~P~~~~~~S~~n~l~v~F~Sd~~~~~~~~Gf~~  117 (170)
T 1szb_A           42 LRLYFTHFDLELSHLCEYDFVKLSSGA----KVLATLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEA  117 (170)
T ss_dssp             EEEEEEEEECCCCTTSCSSEEEEESSS----SEEEEECSBTTTTCSSSCTTCCEECSSSEEEEEEECCSCCSSCCCEEEE
T ss_pred             EEEEEEEEEccCCCCCCCCEEEEEeCC----ccccccCCCCCCccccCCCCceEEeeCCeEEEEEeccccccCcCcCcee
Confidence            689999999999889999999999983    5789999987      47  7899999999999999998876  99999


Q ss_pred             eccc-ccccccCCCCC---ccceeecCCCceEEeccCCeEEccCCcccccCC
Q psy11864         71 IFMK-EFDECALEDHG---CEHTCKNILGGYECSCKIGYELHSDGKICLDAC  118 (193)
Q Consensus        71 ~~~~-~~~~c~~~~~~---c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~~C  118 (193)
                      .|.+ ..++|...+..   |.+.|.+..+++.|.|.+||.+..++.+|.+.|
T Consensus       118 ~~~~~di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~~  169 (170)
T 1szb_A          118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS  169 (170)
T ss_dssp             EEEEEECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEEC-
T ss_pred             eeeccccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCcccccc
Confidence            9976 57899877654   999999999999999999999999999987654

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.89  E-value=4.2e-23  Score=142.94  Aligned_cols=112  Identities=37%  Similarity=0.679  Sum_probs=96.7

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCC--------CceEecCCEEEEEEecCCCCCC--CCceE
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLP--------PDIKSSGTKLMIKFVSDGSVQK--PGFSA   70 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p--------~~i~s~~~~l~v~f~sd~~~~~--~GF~~   70 (193)
                      |+|+|.+|+||.+..|.+|||+|+||.    ..++++||...|        ..++|+++.|+|+|+||.....  +||.+
T Consensus        35 I~l~f~~f~le~~~~C~~D~l~i~dg~----~~~~~~CG~~~~~~~~~P~~~~~~S~~n~l~v~F~Sd~~~~~~~~GF~~  110 (159)
T 1nzi_A           35 IHLYFTHLDIELSENCAYDSVQIISGD----TEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAA  110 (159)
T ss_dssp             EEEEEEEEECCCCGGGCSSEEEEEC-------CCEEECSEECCCCSSCCCSEEEEESSSEEEEEEEECSCCTTCCCEEEE
T ss_pred             EEEEEeEEEecCCCCCCCCEEEEEeCC----chhcccCCCCCCCcccCCcceeEEecCCeEEEEEEecCccCccccccee
Confidence            689999999999888999999999984    478999998764        3699999999999999988875  99999


Q ss_pred             eccc-ccccccCC-CCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         71 IFMK-EFDECALE-DHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        71 ~~~~-~~~~c~~~-~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      .|.. ..++|... ...|.+.|.+..+++.|.|.+||.|..++++|.+
T Consensus       111 ~y~~~d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          111 YYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             EEEEEECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             eeecccCcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence            9986 56899875 4678899999999999999999999999988864

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}

Probab=99.86  E-value=7.5e-22  Score=134.91  Aligned_cols=70  Identities=33%  Similarity=0.747  Sum_probs=65.7

Q ss_pred             cCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCCc
Q psy11864        116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDS  189 (193)
Q Consensus       116 ~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~~  189 (193)
                      ..|++.+...+|.|+||+||..||++.+|.|.|+++++++|+|+|.+|+||...    .|.+|+|+||||.+..
T Consensus         5 ~~Cgg~l~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~~~----~C~~D~l~I~dg~~~~   74 (149)
T 2wno_A            5 KECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDP----GCLADYVEIYDSYDDV   74 (149)
T ss_dssp             SCCCEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCCCT----TCCSSEEEEESSSSSS
T ss_pred             CCCCCEEECCceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecCCC----CCCCCEEEEecCCCCC
Confidence            579999988899999999999999999999999999999999999999999865    8999999999998754

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A

Probab=99.81  E-value=1.6e-20  Score=123.05  Aligned_cols=70  Identities=31%  Similarity=0.644  Sum_probs=61.3

Q ss_pred             cCCCCCc-ccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEe-eEEeecCCCCCCCCCCcEEEEEeCCC
Q psy11864        116 DACGGIL-NTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFT-HFDIEGNNLFQSSCEYDNLTVFSKIG  187 (193)
Q Consensus       116 ~~C~~~~-~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~-~f~l~~~~~~~~~C~~D~l~I~dg~~  187 (193)
                      ..||+.+ ...+|.|+||+||..||++.+|.|.|.++++++|+|+|. .|+||...  ...|.+|+|+|+||..
T Consensus         2 ~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~~--~~~C~~D~l~i~dg~~   73 (115)
T 3poj_A            2 VECSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHP--EVPCPYDYIKIKAGSK   73 (115)
T ss_dssp             -CEEEEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCCS--SSSSCSCEEEEEETTE
T ss_pred             eECCCceEcCCCEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccCC--CCCCCCeEEEEEcCCc
Confidence            3677774 788999999999999999999999999999999999999 59999742  2489999999999953

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.80  E-value=5.3e-20  Score=128.61  Aligned_cols=66  Identities=39%  Similarity=0.709  Sum_probs=60.6

Q ss_pred             CCC-CcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCC
Q psy11864        118 CGG-ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIG  187 (193)
Q Consensus       118 C~~-~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~  187 (193)
                      ||+ .++..+|.|+||+||..||++.+|.|.|+++++++|+|+|.+|+||...    .|.+|||+||||..
T Consensus         3 ~G~~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~----~C~~D~l~i~dg~~   69 (170)
T 1szb_A            3 LGPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSH----LCEYDFVKLSSGAK   69 (170)
T ss_dssp             CCCCCCCCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCCT----TSCSSEEEEESSSS
T ss_pred             CccceEcCCCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCCC----CCCCCEEEEEeCCc
Confidence            444 4578899999999999999999999999999999999999999999876    89999999999864

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.79  E-value=7.5e-20  Score=126.52  Aligned_cols=61  Identities=36%  Similarity=0.668  Sum_probs=55.0

Q ss_pred             ccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCC
Q psy11864        123 NTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIG  187 (193)
Q Consensus       123 ~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~  187 (193)
                      +..+|.|+||+||..||++.+|.|.|+++++++|+|+|.+|+||...    .|.+|+|+||||..
T Consensus         2 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~----~C~~D~l~i~dg~~   62 (159)
T 1nzi_A            2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSE----NCAYDSVQIISGDT   62 (159)
T ss_dssp             CCSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCG----GGCSSEEEEEC---
T ss_pred             CCCCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecCCC----CCCCCEEEEEeCCc
Confidence            45689999999999999999999999999999999999999999865    89999999999964

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}

Probab=99.79  E-value=4.4e-19  Score=121.13  Aligned_cols=75  Identities=39%  Similarity=0.715  Sum_probs=70.4

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecccc
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKE   75 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~~   75 (193)
                      |+|+|.+|+||.+..|.+|||+||||....++++++|||...|..++|+++.|+|+|++|.....+||+|.|.+.
T Consensus        45 I~L~F~~f~le~~~~C~~D~l~I~dg~~~~~~~~~~~CG~~~p~~~~S~~n~l~v~F~Sd~~~~~~GF~a~y~~~  119 (149)
T 2wno_A           45 IHLSFLDFDLEDDPGCLADYVEIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSDASVTAGGFQIKYVAM  119 (149)
T ss_dssp             EEEEEEEEECCCCTTCCSSEEEEESSSSSSSSEEEEECSSSCCCCEECSSSEEEEEEECCSSCCCCEEEEEEEEE
T ss_pred             EEEEEEEEEecCCCCCCCCEEEEecCCCCCcceeeeEcCCCCCCCEEEeCCEEEEEEEECCCCCCCCEEEEEEEE
Confidence            689999999999889999999999998777788999999999999999999999999999999999999999873

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.74  E-value=1.1e-18  Score=135.67  Aligned_cols=64  Identities=36%  Similarity=0.690  Sum_probs=59.8

Q ss_pred             cccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCCc
Q psy11864        122 LNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDS  189 (193)
Q Consensus       122 ~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~~  189 (193)
                      |++..|.|+|||||++||++++|.|.|+||+|++|+|+|.+|+||...    .|.+|||+|+||....
T Consensus         5 lt~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~l~F~~f~lE~~~----~C~~D~l~i~dg~~~~   68 (361)
T 4aqb_A            5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSY----LCEYDYVKVETEDQVL   68 (361)
T ss_dssp             EESSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCG----GGCSSEEEEECSSCEE
T ss_pred             EeCCeEEEeCCCCCCCCCCCCeEEEEEEECCCCEEEEEEeEEEecCCC----CCCceEEEEccCCccc
Confidence            577899999999999999999999999999999999999999999876    8999999999997654

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}

Probab=99.72  E-value=5.1e-18  Score=135.76  Aligned_cols=74  Identities=36%  Similarity=0.744  Sum_probs=63.1

Q ss_pred             cCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCC--CCCCCCCcEEEEEeCCCCc
Q psy11864        116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNL--FQSSCEYDNLTVFSKIGDS  189 (193)
Q Consensus       116 ~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~--~~~~C~~D~l~I~dg~~~~  189 (193)
                      ..|++.+....|.|+||+||+.||++.+|.|.|.+|++++|.|.|..|+||....  ....|.+|||+||||.+..
T Consensus         6 ~~Cg~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~   81 (460)
T 2qqo_A            6 EDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHV   81 (460)
T ss_dssp             -CCCEEECSSEEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC--------CCSSEEEEESSSTTT
T ss_pred             CCCCCEEeCCceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEcccccccccCCCCCCCEEEEEcCCCCC
Confidence            4699999888999999999999999999999999999999999999999997410  0137999999999998654

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=99.72  E-value=2.8e-18  Score=128.91  Aligned_cols=64  Identities=36%  Similarity=0.685  Sum_probs=57.4

Q ss_pred             CCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCC
Q psy11864        120 GILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIG  187 (193)
Q Consensus       120 ~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~  187 (193)
                      +.++..+|.|+||+||+.||++.+|+|.|+++++++|+|+|..|+||...    .|.+|+|+||||..
T Consensus         3 ~~lt~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~----~C~~D~l~v~dg~~   66 (278)
T 3dem_A            3 VELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSY----LCEYDYVKVETEDQ   66 (278)
T ss_dssp             ----CCEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCG----GGCSSEEEEECSSC
T ss_pred             ceeccCCceEeCCCCCCCCcCCCcEEEEEEECCCCEEEEEEEEEEeCCCC----CCCCcEEEEecCCc
Confidence            45678899999999999999999999999999999999999999999876    89999999999964

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1

Probab=99.72  E-value=5.8e-18  Score=135.12  Aligned_cols=76  Identities=30%  Similarity=0.573  Sum_probs=65.4

Q ss_pred             ccCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCC--CCCCCCcEEEEEeCCCCcc
Q psy11864        115 LDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLF--QSSCEYDNLTVFSKIGDSF  190 (193)
Q Consensus       115 ~~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~--~~~C~~D~l~I~dg~~~~~  190 (193)
                      ...|++.+....|.|+||+||+.||++.+|.|.|.+|++++|.|.|.+|+||.....  ...|.+|||+||||.+...
T Consensus         8 ~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~   85 (450)
T 2qqm_A            8 GPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVG   85 (450)
T ss_dssp             -CTTCEEECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC----CCCSSCSSEEEEESSSTTTS
T ss_pred             CCCCCCeEeCCcEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEeccCCCCCCCCCCcEEEEecCCCCCC
Confidence            467999998889999999999999999999999999999999999999999974210  1279999999999986543

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.71  E-value=1.6e-17  Score=107.57  Aligned_cols=60  Identities=22%  Similarity=0.582  Sum_probs=55.4

Q ss_pred             cCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCC
Q psy11864        116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGD  188 (193)
Q Consensus       116 ~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~  188 (193)
                      ..||+.+...+|.|+||     ||++.+|.|.|++|++++|.|+|.+|+|        .|.+|||+||||...
T Consensus         4 ~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l--------~C~~D~l~I~dg~~~   63 (109)
T 1spp_A            4 HACGGRLTDDYGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNL--------TCGKEYVEVLEGAPG   63 (109)
T ss_dssp             CSSCEEEECSEEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEEC--------CTTTEEEEEESSSTT
T ss_pred             cCCCCEEeCCcEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeec--------cCCCCEEEEEeCCCC
Confidence            57999998889999998     8899999999999999999999999997        588899999999864

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=99.71  E-value=6.8e-18  Score=127.24  Aligned_cols=63  Identities=37%  Similarity=0.691  Sum_probs=57.6

Q ss_pred             CcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCC
Q psy11864        121 ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIG  187 (193)
Q Consensus       121 ~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~  187 (193)
                      .++..+|.|+||+||..||++.+|.|.|++|++++|+|+|..|+||...    .|.+|||+||||..
T Consensus         3 ~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~L~F~~f~le~~~----~C~~D~l~I~dg~~   65 (286)
T 1nt0_A            3 WPEPVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSY----RCEYDFVKLTSGTK   65 (286)
T ss_dssp             --CCCEEEEECTTTTSCCCSSCCEEEEEECCTTEEEEEEEEEEECCCCG----GGCSSEEEEEETTE
T ss_pred             cccCCCceEeCCCCCccCcCCCcEEEEEEcCCCCEEEEEEEEEEecCCC----CCCCcEEEEECCCe
Confidence            4567889999999999999999999999999999999999999999865    89999999999863

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.68  E-value=4.2e-17  Score=106.75  Aligned_cols=60  Identities=18%  Similarity=0.618  Sum_probs=55.4

Q ss_pred             cCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCC
Q psy11864        116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGD  188 (193)
Q Consensus       116 ~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~  188 (193)
                      ..||+.+...+|.|+||     ||++.+|.|.|++|++++|.|+|.+|+|        .|.+|+|+||||.+.
T Consensus         7 ~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l--------~C~~D~l~i~dg~~~   66 (116)
T 1spp_B            7 DECGRVIKDTSGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNL--------ACGKEYVEVFDGLLS   66 (116)
T ss_dssp             GGTTEEECCSEEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEEC--------CBTTEEEEEESSSTT
T ss_pred             CCCCCEEeCCceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCcc--------cCCCCEEEEEcCCCC
Confidence            57999998889999998     8889999999999999999999999998        478899999999864

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1

Probab=99.67  E-value=8.6e-17  Score=104.97  Aligned_cols=61  Identities=25%  Similarity=0.724  Sum_probs=55.6

Q ss_pred             ccCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCC
Q psy11864        115 LDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGD  188 (193)
Q Consensus       115 ~~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~  188 (193)
                      ...||+.+...+|.|+||     ||++.+|.|.|++|++++|.|+|.+|+|        .|.+|||+||||.+.
T Consensus         7 ~~~Cgg~l~~~~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l--------~C~~D~l~i~dg~~~   67 (114)
T 1sfp_A            7 NTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQL--------NCNKESLEIIDGLPG   67 (114)
T ss_dssp             ECSSCEEECCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEEC--------CTTTEEEEEESSSTT
T ss_pred             CCCCCCeEECCcEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeee--------ecCCCEEEEEcCCCC
Confidence            368999998889999997     7889999999999999999999999997        588899999999874

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A

Probab=99.65  E-value=3.2e-16  Score=102.40  Aligned_cols=70  Identities=36%  Similarity=0.741  Sum_probs=63.4

Q ss_pred             CEEEee-EEeecCC--CCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEeccc
Q psy11864          1 VALKFQ-SFEIENH--DQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMK   74 (193)
Q Consensus         1 I~l~F~-~f~le~~--~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~   74 (193)
                      |+|+|. .|+||..  ..|.+|+|+|+||.    ..++++||...|..++|+++.|+|+|++|.....+||++.|++
T Consensus        43 i~l~f~d~f~le~~~~~~C~~D~l~i~dg~----~~~~~~CG~~~p~~~~s~~~~l~i~F~Sd~~~~~~GF~~~y~a  115 (115)
T 3poj_A           43 VTLQFEDIFDIEDHPEVPCPYDYIKIKAGS----KVWGPFCGEKSPEPISTQSHSIQILFRSDNSGENRGWRLSYRA  115 (115)
T ss_dssp             CEEEECSCCBBCCCSSSSSCSCEEEEEETT----EEEEEECBSSCCCCEECCCSEEEEEEECCSSCCCCBCEEEEEC
T ss_pred             EEEEEecceecccCCCCCCCCeEEEEEcCC----cccccCcCCCCCCCEEecCCEEEEEEEcCCCCCCCCEEEEEEC
Confidence            789999 5999975  48999999999983    4789999999999999999999999999999999999999864

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.64  E-value=2.1e-16  Score=103.41  Aligned_cols=69  Identities=22%  Similarity=0.376  Sum_probs=63.4

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecccc
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKE   75 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~~   75 (193)
                      |+|+|.+|+|    +|.+|+|+||||... +++++++||.. |..++|++|.|+|+|++|.....+||.+.|.+.
T Consensus        42 I~l~f~~f~l----~C~~D~l~i~dg~~~-~~~~~~~CG~~-p~~~~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~  110 (116)
T 1spp_B           42 VRMAIPYLNL----ACGKEYVEVFDGLLS-GPSYGKLCAGA-AIVFLSTANTMTIKYNRISGNSSSPFLIYFYGS  110 (116)
T ss_dssp             EEEEEEEEEC----CBTTEEEEEESSSTT-SCEEEEESEEE-EEEEECSSSEEEEEEEESSCSCCCCCEEEEEEE
T ss_pred             EEEEEeeCcc----cCCCCEEEEEcCCCC-CcccccccCcC-CCCEEecCCEEEEEEEECCCCCCCCEEEEEEEe
Confidence            6899999999    488999999999876 78899999988 889999999999999999999999999999873

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}

Probab=99.64  E-value=1.3e-15  Score=121.85  Aligned_cols=75  Identities=39%  Similarity=0.760  Sum_probs=68.3

Q ss_pred             CEEEeeEEeecCC------CCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEeccc
Q psy11864          1 VALKFQSFEIENH------DQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMK   74 (193)
Q Consensus         1 I~l~F~~f~le~~------~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~   74 (193)
                      |+|+|.+|+||.+      ..|.+|||+||||.....+++++|||...|..++|+++.|+|+|+||.+....||++.|.+
T Consensus        46 I~L~F~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~~~~~~CG~~~p~~i~S~~n~l~v~F~Sd~~~~~~GF~~~y~~  125 (460)
T 2qqo_A           46 IILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKDGFSARYYL  125 (460)
T ss_dssp             EEEEEEEEECCCC--------CCSSEEEEESSSTTTSCEEEEECTTCCCCCEEECSSEEEEEEECCSSCCCCEEEEEEEE
T ss_pred             EEEEEEEEEcccccccccCCCCCCCEEEEEcCCCCCCcccceEeCCcCCcCEEeeCCEEEEEEeccceeecCcEEEEEEE
Confidence            6899999999975      4799999999999887788999999999999999999999999999999999999999987


Q ss_pred             c
Q psy11864         75 E   75 (193)
Q Consensus        75 ~   75 (193)
                      .
T Consensus       126 ~  126 (460)
T 2qqo_A          126 V  126 (460)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1

Probab=99.64  E-value=3.1e-16  Score=102.30  Aligned_cols=69  Identities=23%  Similarity=0.532  Sum_probs=62.8

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecccc
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKE   75 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~~   75 (193)
                      |+|+|.+|+|    .|.+|||+|+||... ++++++|||.. |..++|++|.|+|+|++|.....+||.|.|.+.
T Consensus        43 I~l~f~~f~l----~C~~D~l~i~dg~~~-~~~~~~~CG~~-p~~~~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~  111 (114)
T 1sfp_A           43 VRVSIQYLQL----NCNKESLEIIDGLPG-SPVLGKICEGS-LMDYRSSGSIMTVKYIREPEHPASFYEVLYFQD  111 (114)
T ss_dssp             EEEEEEEEEC----CTTTEEEEEESSSTT-SCEEEEESEEE-EEEEECSSSEEEEEEEECTTSCCCCCEEEEEEE
T ss_pred             EEEEEeeeee----ecCCCEEEEEcCCCC-CcceeEecCcC-CCCEEecCCeEEEEEEECCCCCCCCEEEEEEEE
Confidence            6899999998    488999999999874 77899999988 889999999999999999999999999999763

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1

Probab=99.63  E-value=7.4e-16  Score=122.98  Aligned_cols=75  Identities=41%  Similarity=0.725  Sum_probs=69.6

Q ss_pred             CEEEeeEEeecCCC------CCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEeccc
Q psy11864          1 VALKFQSFEIENHD------QCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMK   74 (193)
Q Consensus         1 I~l~F~~f~le~~~------~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~   74 (193)
                      |+|+|.+|+||.+.      .|.+|||+||||....++++++|||...|..++|+++.|+|+|+||.+....||.+.|.+
T Consensus        49 I~l~f~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~~~~~~CG~~~p~~i~S~~n~l~v~F~Sd~~~~~~GF~~~y~~  128 (450)
T 2qqm_A           49 IILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSV  128 (450)
T ss_dssp             EEEEEEEEECCCC----CCCSSCSSEEEEESSSTTTSCEEEEECTTCCCCEEEECSSEEEEEEECCSSCCCCEEEEEEEE
T ss_pred             EEEEEEEEEeEeccCCCCCCCCCCcEEEEecCCCCCCccceeecCCcCCCcEEEcCCEEEEEEEeCCccccCCeEEEEec
Confidence            68999999999864      799999999999887788999999999999999999999999999999999999999987


Q ss_pred             c
Q psy11864         75 E   75 (193)
Q Consensus        75 ~   75 (193)
                      .
T Consensus       129 ~  129 (450)
T 2qqm_A          129 L  129 (450)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.63  E-value=1.1e-15  Score=125.30  Aligned_cols=80  Identities=39%  Similarity=0.681  Sum_probs=72.7

Q ss_pred             CEEEeeEEeecCCC------CCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEeccc
Q psy11864          1 VALKFQSFEIENHD------QCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMK   74 (193)
Q Consensus         1 I~l~F~~f~le~~~------~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~   74 (193)
                      |+|+|.+|+||.+.      .|.+|||+||||....++++++|||...|..|+|++|.|+|+|+||.+...+||+|.|++
T Consensus       167 I~L~F~~F~lE~~~~~~~~~~C~~D~l~I~dG~~~~~~~lg~~CG~~~P~~i~S~~n~l~i~F~SD~s~~~~GF~a~y~~  246 (577)
T 4gz9_A          167 IILEFESFDLEQDSNPPGGMFCRYDRLEIWDGFPEVGPHIGRYCGQKTPGRIRSSSGVLSMVFYTDSAIAKEGFSANYSV  246 (577)
T ss_dssp             EEEEEEEEECCCCCSCSTTCCCCSSEEEEESSSTTTSCEEEEECSSSCCCCEEECSSEEEEEEECCSSCCCCEEEEEEEE
T ss_pred             EEEEEEEEEeeecCCCCCCCccCccEEEEEcCCCCCCceeEEEeCCCCCCCcceeCCEEEEEEEECCCCCCceEEEEEEE
Confidence            67999999999754      399999999999988889999999999999999999999999999999999999999998


Q ss_pred             cccccc
Q psy11864         75 EFDECA   80 (193)
Q Consensus        75 ~~~~c~   80 (193)
                      ....|.
T Consensus       247 v~~~~s  252 (577)
T 4gz9_A          247 LQSSIS  252 (577)
T ss_dssp             CCCCCC
T ss_pred             Eccccc
Confidence            655554

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.62  E-value=3.8e-16  Score=101.04  Aligned_cols=68  Identities=18%  Similarity=0.469  Sum_probs=61.6

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecccc
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKE   75 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~~   75 (193)
                      |+|+|.+|+|    +|.+|||+||||... ++++++|||.. |..++| +|.|+|+|+||.+...+||++.|.+.
T Consensus        39 I~l~f~~f~l----~C~~D~l~I~dg~~~-~~~~~~~CG~~-p~~~~S-~n~l~v~F~Sd~~~~~~GF~~~y~~~  106 (109)
T 1spp_A           39 LLVSIPTLNL----TCGKEYVEVLEGAPG-SKSLGKFCEGL-SILNRG-SSGMTVKYKRDSGHPASPYEIIFLRD  106 (109)
T ss_dssp             EEEEEEEEEC----CTTTEEEEEESSSTT-SCEEEEESEEE-EEEEEE-CTTCEEEEEECTTCCCCCCEEEEEEE
T ss_pred             EEEEEeeeec----cCCCCEEEEEeCCCC-CchhhhhhCCC-CCCEEE-CCEEEEEEEeCCCCCCCCEEEEEEEe
Confidence            6899999998    488999999999865 77899999986 888999 99999999999999999999999763

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.60  E-value=7.8e-16  Score=126.38  Aligned_cols=70  Identities=39%  Similarity=0.797  Sum_probs=61.7

Q ss_pred             cCCCCCccc-CCCCccCCCCCCCCCCCCceEEEEEcCC-CCeEEEEEe-eEEeecCCCCCCCCCCcEEEEEeCCCCcc
Q psy11864        116 DACGGILNT-PNGTLTSPSFPDLYIKNKTCIWEIVAPP-QYRISLNFT-HFDIEGNNLFQSSCEYDNLTVFSKIGDSF  190 (193)
Q Consensus       116 ~~C~~~~~~-~~g~i~Sp~~p~~y~~~~~C~w~I~~~~-~~~i~l~F~-~f~l~~~~~~~~~C~~D~l~I~dg~~~~~  190 (193)
                      ..||+.+.. .+|.|+||+||..||++.+|.|.|.+|. +++|.|.|. .|+||..     .|.+|||+||||.+...
T Consensus         4 ~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~~~~~I~l~F~~~f~le~~-----~C~~D~l~i~dg~~~~~   76 (579)
T 2qqk_A            4 PPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKH-----DCKYDFIEIRDGDSESA   76 (579)
T ss_dssp             -CCCEEEETTSCEEEECTTTTSCCCSSCCEEEEEECSSTTSEEEEEECSCCBCCCT-----TSSSSEEEEEESSSTTS
T ss_pred             CCCCCEEEeCCCeEEeCCCCCCCCcCCCEEEEEEEECCCCcEEEEEEecccccccC-----CCCeeEEEEEeCCCCCc
Confidence            469998864 6899999999999999999999999995 689999999 8999973     79999999999986543

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=98.21  E-value=9.6e-07  Score=51.47  Aligned_cols=42  Identities=36%  Similarity=0.773  Sum_probs=38.4

Q ss_pred             ccccccCCCCCccceeecCCC-ceEEeccCCeEEccCCccccc
Q psy11864         75 EFDECALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        75 ~~~~c~~~~~~c~~~c~~~~~-~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      +.++|...+++|.+.|.+..+ ++.|.|++||.|..++++|.+
T Consensus         4 d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d   46 (69)
T 1kli_L            4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP   46 (69)
T ss_dssp             CCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             ccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccC
Confidence            467898888899999999999 899999999999999999975

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.17  E-value=1.2e-06  Score=48.76  Aligned_cols=40  Identities=33%  Similarity=0.856  Sum_probs=35.9

Q ss_pred             ccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        77 ~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ++|...+..|.+.|.+.++++.|.|++||.|..++.+|.+
T Consensus         2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~d   41 (55)
T 2jkh_L            2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP   41 (55)
T ss_dssp             CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeecc
Confidence            5677777789999999999999999999999999998874

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=98.02  E-value=4.5e-06  Score=47.04  Aligned_cols=38  Identities=37%  Similarity=0.809  Sum_probs=33.7

Q ss_pred             ccCCCCCccceeecCC-CceEEeccCCeEEccCCccccc
Q psy11864         79 CALEDHGCEHTCKNIL-GGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        79 c~~~~~~c~~~c~~~~-~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      |...+++|.+.|.+.+ +++.|.|++||.|..++++|.+
T Consensus         2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d   40 (59)
T 2wph_E            2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP   40 (59)
T ss_dssp             TTTGGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccC
Confidence            5556778999999999 6999999999999999999975

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=98.02  E-value=2.5e-06  Score=46.60  Aligned_cols=38  Identities=37%  Similarity=0.942  Sum_probs=33.4

Q ss_pred             ccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        79 c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      |...+..|.+.|.+..+++.|.|++||.|..++++|.+
T Consensus         1 C~~~ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~d   38 (51)
T 1kig_L            1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVS   38 (51)
T ss_dssp             CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEE
T ss_pred             CCCCCCCcCCEeEcCCCCeEEeCCCCcEECCCCCcccc
Confidence            34456789999999999999999999999999999874

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=98.00  E-value=3.9e-06  Score=46.22  Aligned_cols=38  Identities=39%  Similarity=0.912  Sum_probs=33.7

Q ss_pred             ccCCCCCccceeecCCC-ceEEeccCCeEEccCCccccc
Q psy11864         79 CALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        79 c~~~~~~c~~~c~~~~~-~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      |...+.+|.+.|.+..+ ++.|.|++||.|..++++|.+
T Consensus         2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d   40 (53)
T 2bz6_L            2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP   40 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccC
Confidence            55567789999999998 799999999999999999975

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.96  E-value=1e-05  Score=44.47  Aligned_cols=42  Identities=48%  Similarity=1.085  Sum_probs=34.8

Q ss_pred             ccccccCC--------CCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         75 EFDECALE--------DHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        75 ~~~~c~~~--------~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      .+++|...        ...|.+.|.+..+++.|.|++||.+..++.+|.+
T Consensus         3 DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~   52 (53)
T 1apq_A            3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred             ccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCccCC
Confidence            35677654        3678899999999999999999999988888854

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.37  E-value=0.00019  Score=48.23  Aligned_cols=68  Identities=26%  Similarity=0.531  Sum_probs=50.4

Q ss_pred             CCCceEecccccccccCCCCCcccee-ecCCCceEEeccCCeEEccCCcccccCCCCCcccCCCCccCCCCCC
Q psy11864         65 KPGFSAIFMKEFDECALEDHGCEHTC-KNILGGYECSCKIGYELHSDGKICLDACGGILNTPNGTLTSPSFPD  136 (193)
Q Consensus        65 ~~GF~~~~~~~~~~c~~~~~~c~~~c-~~~~~~~~c~c~~g~~l~~~~~~C~~~C~~~~~~~~g~i~Sp~~p~  136 (193)
                      ..||........++|...+..|.+.| .+..+++.|.|++||.+..++..|.+.    ...+-|.+.+++.|.
T Consensus        74 ~~G~~G~~C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~----~~~pCg~~~~~~~~~  142 (146)
T 1x7a_L           74 QVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPA----VPFPCGRVSVSHSPT  142 (146)
T ss_dssp             CSSEESTTTCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEEEC----SSSCTTCCCTTTTTT
T ss_pred             CCCCcCCcCCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCCCC----CCCCCCCcccCcCCc
Confidence            46777666556678887667888899 999999999999999999888888652    222345556666654

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=97.33  E-value=0.00015  Score=54.17  Aligned_cols=47  Identities=43%  Similarity=0.883  Sum_probs=42.0

Q ss_pred             cccccCC-CCCccceeecCCCceEEeccCCeEEccCCccccc----CCCCCc
Q psy11864         76 FDECALE-DHGCEHTCKNILGGYECSCKIGYELHSDGKICLD----ACGGIL  122 (193)
Q Consensus        76 ~~~c~~~-~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~----~C~~~~  122 (193)
                      .++|... +++|.+.|.+..+++.|+|++||.+..+.++|..    .||...
T Consensus         2 ~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c~CG~~~   53 (283)
T 3f1s_B            2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLT   53 (283)
T ss_dssp             -CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTTCTTCCC
T ss_pred             CCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCccccccccccCccc
Confidence            5789888 8999999999999999999999999999999997    888654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.96  E-value=0.00032  Score=53.87  Aligned_cols=39  Identities=41%  Similarity=0.973  Sum_probs=27.4

Q ss_pred             ccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        77 ~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ++|. .+..|.+.|.+..+++.|.|++||.+..++++|..
T Consensus         2 ~ec~-~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~   40 (349)
T 3v64_C            2 NECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKA   40 (349)
T ss_dssp             --------CCSSEECCC---CCEECCTTEEECTTSSCEEE
T ss_pred             cccC-CCCCCcCeeecCCCCeEEECCCCccCCCCCCcccc
Confidence            5787 56789999999999999999999999999999974

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=96.80  E-value=0.00052  Score=41.56  Aligned_cols=50  Identities=28%  Similarity=0.646  Sum_probs=37.2

Q ss_pred             CCCceEe-----cccccccccCCCCCcc-ceeecCCCceEEeccCCeEEccCCccc
Q psy11864         65 KPGFSAI-----FMKEFDECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKIC  114 (193)
Q Consensus        65 ~~GF~~~-----~~~~~~~c~~~~~~c~-~~c~~~~~~~~c~c~~g~~l~~~~~~C  114 (193)
                      ..||.+.     ....+++|......|. ..|.+..+++.|.|++||.+..++++|
T Consensus        30 ~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~C   85 (86)
T 1lmj_A           30 DEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC   85 (86)
T ss_dssp             CSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCC
T ss_pred             CCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCCCCcc
Confidence            3566543     2335677876555565 589999999999999999988877766

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=96.75  E-value=0.0013  Score=42.03  Aligned_cols=52  Identities=35%  Similarity=0.784  Sum_probs=40.5

Q ss_pred             CCCceEecccc---cccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         65 KPGFSAIFMKE---FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        65 ~~GF~~~~~~~---~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ..||.......   .++|...+..|.+.|.+..+++.|.|++||.+..+++.|.+
T Consensus        40 ~~G~~G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~   94 (114)
T 1aut_L           40 RSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHP   94 (114)
T ss_dssp             CTTEESTTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCcCCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCc
Confidence            35665554433   24677667788889999999999999999999998888864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.68  E-value=0.0041  Score=48.59  Aligned_cols=38  Identities=37%  Similarity=0.941  Sum_probs=29.5

Q ss_pred             ccccCCCCCccceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         77 DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        77 ~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      ++|...+..|.+.|.+.++++.|.|++||.+ .++..|.
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~-~~~~~C~   38 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCE   38 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCTTEEE-CSSSCEE
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCCCCCc-CCCCccc
Confidence            3676666778888999889999999999987 4566664

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=96.68  E-value=0.001  Score=46.70  Aligned_cols=52  Identities=29%  Similarity=0.671  Sum_probs=35.9

Q ss_pred             CCCceEecccc-c-ccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         65 KPGFSAIFMKE-F-DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        65 ~~GF~~~~~~~-~-~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ..||....... + ++|...+..|.+.|.+..+++.|.|++||.+..++..|..
T Consensus        68 ~~Gf~G~~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~  121 (195)
T 1nfu_B           68 LEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP  121 (195)
T ss_dssp             -------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCCceeccccccccccccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCcccc
Confidence            46777666554 4 6788777788889999999999999999999999998874

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=96.68  E-value=0.0014  Score=41.41  Aligned_cols=55  Identities=27%  Similarity=0.542  Sum_probs=37.7

Q ss_pred             cCCCCCCCCceEecccccccccCCCCCccceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         59 SDGSVQKPGFSAIFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        59 sd~~~~~~GF~~~~~~~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      .+......||..... .+++|...+..|.+.|.+..+++.|.|++||.+. ++..|.
T Consensus        13 ~~~~~~~~~~~~~~C-d~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~-~g~~C~   67 (107)
T 2w2n_E           13 YDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV-AQRRCE   67 (107)
T ss_dssp             -------CCCCSCCB-SCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEE-TTTEEE
T ss_pred             ccccccCCCcCCCCC-cCccCcCCCCCCCCEeEeCCCCeEEECCCCcccc-CCCccc
Confidence            334444566655544 5788887777888999999999999999999974 445554

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=96.62  E-value=0.0013  Score=43.38  Aligned_cols=52  Identities=29%  Similarity=0.671  Sum_probs=34.9

Q ss_pred             CCCceEecccc-c-ccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         65 KPGFSAIFMKE-F-DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        65 ~~GF~~~~~~~-~-~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ..||....... + ++|...+..|.+.|.+..+++.|.|++||.+..++..|.+
T Consensus        68 ~~G~~G~~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~  121 (134)
T 2vh0_B           68 LEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP  121 (134)
T ss_dssp             -------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCCccCCccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCc
Confidence            46676655544 4 6787766678889999999999999999999988888864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.44  E-value=0.0025  Score=48.13  Aligned_cols=41  Identities=27%  Similarity=0.611  Sum_probs=35.2

Q ss_pred             ccccccCC---CCCccceeecCC------CceEEeccCCeEEccCCcccc
Q psy11864         75 EFDECALE---DHGCEHTCKNIL------GGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        75 ~~~~c~~~---~~~c~~~c~~~~------~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      ..++|...   +++|.+.|...+      +++.|.|+.||.|..++++|.
T Consensus       266 ~~n~C~~~~~~ng~Cs~~C~~~p~~~~~~~~~~C~C~~g~~l~~d~~~C~  315 (316)
T 1ijq_A          266 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL  315 (316)
T ss_dssp             CCCTTSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred             ccccccccccCCCCcCcccCCCccccCCCCCeEeeCCCCCEECCCCCccC
Confidence            34678877   889999999875      579999999999999999885

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.43  E-value=0.0018  Score=53.56  Aligned_cols=42  Identities=43%  Similarity=0.856  Sum_probs=38.0

Q ss_pred             ccccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         75 EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        75 ~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ..++|...+++|.+.|...++++.|.|+.||.|..++++|..
T Consensus       577 ~~~~C~~~ng~C~~~C~~~~~~~~C~C~~g~~l~~d~~~C~~  618 (619)
T 3s94_A          577 GSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCIV  618 (619)
T ss_dssp             CCCGGGSGGGGCSSEEEEETTEEEEECCTTCEECSSTTCEEC
T ss_pred             ccccCCCCCCChhHhhccCCCCeEEECCCCCEECCCCCcCCC
Confidence            457898888999999999999999999999999999998864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.40  E-value=0.0015  Score=54.27  Aligned_cols=46  Identities=30%  Similarity=0.778  Sum_probs=40.7

Q ss_pred             ccccccCCCCCccceeecCC-CceEEeccCCeEEccCCcccccCCCC
Q psy11864         75 EFDECALEDHGCEHTCKNIL-GGYECSCKIGYELHSDGKICLDACGG  120 (193)
Q Consensus        75 ~~~~c~~~~~~c~~~c~~~~-~~~~c~c~~g~~l~~~~~~C~~~C~~  120 (193)
                      ..++|...+.+|.+.|.+.+ +++.|.|++||.+..++++|...+..
T Consensus       264 ~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~  310 (628)
T 4a0p_A          264 GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF  310 (628)
T ss_dssp             CCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSE
T ss_pred             cceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccce
Confidence            46789888889999999998 99999999999999999999876544

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=96.38  E-value=0.00079  Score=42.61  Aligned_cols=49  Identities=35%  Similarity=0.846  Sum_probs=6.6

Q ss_pred             CCCceE---ecccccccccCCCCCccceeecCCCceEEeccCCeEEccCCccc
Q psy11864         65 KPGFSA---IFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC  114 (193)
Q Consensus        65 ~~GF~~---~~~~~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C  114 (193)
                      ..||.+   ....++++|.. ...|.+.|.+..+++.|.|++||.+..++.+|
T Consensus        55 ~~Gy~g~~g~~C~dideC~~-~~~C~~~C~n~~gsy~C~C~~Gy~~~~d~~~C  106 (107)
T 2w2n_E           55 PDGFQLVAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC  106 (107)
T ss_dssp             CTTCEEETTTEEEC---------------------------------------
T ss_pred             CCCccccCCCccccccccCC-CCCcCCeeecCCCCEEEECCCCceECCCCCcc
Confidence            477876   34446788863 34688899999999999999999988777766

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.35  E-value=0.0023  Score=48.44  Aligned_cols=42  Identities=33%  Similarity=0.816  Sum_probs=36.3

Q ss_pred             cccccCCCCCccceeecCCC--ceEEeccCCeEEccCCcccccC
Q psy11864         76 FDECALEDHGCEHTCKNILG--GYECSCKIGYELHSDGKICLDA  117 (193)
Q Consensus        76 ~~~c~~~~~~c~~~c~~~~~--~~~c~c~~g~~l~~~~~~C~~~  117 (193)
                      .+.|...+.+|.+.|+..++  ++.|.|+.||.|..++++|.+.
T Consensus       267 ~n~C~~~ng~Cs~~C~~~~~~~~~~C~C~~g~~l~~d~~~c~~~  310 (318)
T 3sov_A          267 TNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG  310 (318)
T ss_dssp             CCTTTTTGGGCSSEEEECSSTTSEEEECSTTCCBCTTSSCBCC-
T ss_pred             ccccccCCCCcceEEecCCCCCCeEEECCCCCEECCCCCCCCCC
Confidence            46788888899999998876  6899999999999999999763

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=96.35  E-value=0.006  Score=46.07  Aligned_cols=57  Identities=39%  Similarity=0.827  Sum_probs=45.6

Q ss_pred             CCCceEeccc-ccccccCC-CCCccceeecCCCceEEeccCCeEEccCCccccc----CCCCC
Q psy11864         65 KPGFSAIFMK-EFDECALE-DHGCEHTCKNILGGYECSCKIGYELHSDGKICLD----ACGGI  121 (193)
Q Consensus        65 ~~GF~~~~~~-~~~~c~~~-~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~----~C~~~  121 (193)
                      ..||...... +.++|... ...|.+.|.+..+++.|.|++||.+..+.+.|.+    .|+..
T Consensus        31 ~~g~~g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~~~c~cg~~   93 (317)
T 3h5c_B           31 SPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVL   93 (317)
T ss_dssp             SSSCCSSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTSSCCEECSSCCCCCC
T ss_pred             CCCCcCCccccCcccCCCCCCCCCcCccccCCCeeEEeccccccccccccccccccccccccc
Confidence            4677666665 77889763 4688889999999999999999999888888886    55543

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=96.27  E-value=0.0023  Score=43.49  Aligned_cols=49  Identities=33%  Similarity=0.836  Sum_probs=38.5

Q ss_pred             CceEe----cccccccccCCCCCcc-ceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         67 GFSAI----FMKEFDECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        67 GF~~~----~~~~~~~c~~~~~~c~-~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      ||...    ....+++|......|. ..|++..+++.|.|++||.+..++++|.
T Consensus       109 G~~~~~~~~~c~dideC~~~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~d~~~C~  162 (162)
T 1uzk_A          109 GFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD  162 (162)
T ss_dssp             TEEECTTTCCEEECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred             CcccCCCCCccCccccccCCCCCcCCCEeEcCCCCEEeeCCCCccCCCCCCccC
Confidence            77774    2246788876555676 4899999999999999999988888773

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.17  E-value=0.0011  Score=51.64  Aligned_cols=33  Identities=36%  Similarity=0.887  Sum_probs=16.3

Q ss_pred             CCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         84 HGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        84 ~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ..|.+.|.+..+++.|.|.+||.+..+++.|..
T Consensus        51 ~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~~   83 (386)
T 3v65_B           51 GYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKA   83 (386)
T ss_dssp             -CCTTEEC-----CCEECCTTEEECTTSSCEEE
T ss_pred             CcccCcCCCCCCCCeEEECCCceEcCCCCeECC
Confidence            345555666666666666666666655555554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.16  E-value=0.002  Score=50.04  Aligned_cols=32  Identities=41%  Similarity=1.090  Sum_probs=0.0

Q ss_pred             CCccceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         84 HGCEHTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        84 ~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      ..|.+.|.+..+++.|.|++||.+..+++.|.
T Consensus        11 ~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~   42 (386)
T 3v65_B           11 GGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQ   42 (386)
T ss_dssp             --------------------------------
T ss_pred             CCCCCCCcCCCCCcEeECCCCceECCCCCccC
Confidence            46778899999999999999999888888775

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=96.09  E-value=0.0063  Score=36.78  Aligned_cols=40  Identities=43%  Similarity=0.931  Sum_probs=32.2

Q ss_pred             cccccCCCCCc-cceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         76 FDECALEDHGC-EHTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        76 ~~~c~~~~~~c-~~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      +++|......| ...|.+..+++.|.|++||.+..++..|.
T Consensus         3 ideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~   43 (87)
T 1z6c_A            3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE   43 (87)
T ss_dssp             SCSSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEE
T ss_pred             cccccCCCCCCCCCEeECCCCCEEEECCCCceECCCCCcCC
Confidence            46776655556 45799999999999999999887777775

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=95.85  E-value=0.0033  Score=41.98  Aligned_cols=50  Identities=32%  Similarity=0.792  Sum_probs=38.7

Q ss_pred             CCCceE---ecccccccccCCCCCccc-eeecCCCceEEeccCCeEEccCCccc
Q psy11864         65 KPGFSA---IFMKEFDECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKIC  114 (193)
Q Consensus        65 ~~GF~~---~~~~~~~~c~~~~~~c~~-~c~~~~~~~~c~c~~g~~l~~~~~~C  114 (193)
                      ..||.+   .....+++|......|.+ .|.+..+++.|.|++||.+..++++|
T Consensus        93 ~~Gy~~~~g~~C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C  146 (147)
T 2w86_A           93 GKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC  146 (147)
T ss_dssp             CTTEEEEETTEEEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSCB
T ss_pred             CCccccCCCCccCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCee
Confidence            567853   233467888765556764 89999999999999999998888776

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=95.83  E-value=0.0081  Score=39.90  Aligned_cols=52  Identities=35%  Similarity=0.747  Sum_probs=38.8

Q ss_pred             CCCceEecccc-ccc---ccCCCCCccceeecCCC-ceEEeccCCeEEccCCccccc
Q psy11864         65 KPGFSAIFMKE-FDE---CALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        65 ~~GF~~~~~~~-~~~---c~~~~~~c~~~c~~~~~-~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ..||....... .+.   |...+..|.+.|.+..+ ++.|.|++||.+..+++.|.+
T Consensus        73 ~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~  129 (142)
T 2c4f_L           73 LPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP  129 (142)
T ss_dssp             CTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEE
T ss_pred             CCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCC
Confidence            46666544432 344   44456678889999999 999999999999998888864

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=95.68  E-value=0.02  Score=33.16  Aligned_cols=37  Identities=27%  Similarity=0.545  Sum_probs=25.5

Q ss_pred             ccccccCCCCCcc--ceeecCCCceEEec-cCCeEEccCC
Q psy11864         75 EFDECALEDHGCE--HTCKNILGGYECSC-KIGYELHSDG  111 (193)
Q Consensus        75 ~~~~c~~~~~~c~--~~c~~~~~~~~c~c-~~g~~l~~~~  111 (193)
                      ++++|......|.  ..|.+..+++.|.+ ..||....++
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~~~   41 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHG   41 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCCSC
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecccCCcccccccC
Confidence            3577876666775  47999999999983 3455544333

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.63  E-value=0.0058  Score=47.76  Aligned_cols=51  Identities=33%  Similarity=0.797  Sum_probs=40.4

Q ss_pred             CCCceE---ecccccccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         65 KPGFSA---IFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        65 ~~GF~~---~~~~~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ..||.+   .-+...++|.. ...|.+.|.+..+++.|.|.+||.+..++.+|..
T Consensus        26 ~~G~~~~~~~~C~dideC~~-~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~~   79 (400)
T 3p5b_L           26 PDGFQLVAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA   79 (400)
T ss_dssp             CTTEEECSSSCEEECCCCST-TSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCCC
T ss_pred             CCCCCcCCCCcccCchhhhc-cCCCCCccCCCccceeeeccccccccccccceee
Confidence            456664   23446788873 4579899999999999999999999988888864

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=95.20  E-value=0.014  Score=38.69  Aligned_cols=42  Identities=29%  Similarity=0.730  Sum_probs=33.2

Q ss_pred             cccccccCCCCCcc--ceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         74 KEFDECALEDHGCE--HTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        74 ~~~~~c~~~~~~c~--~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      ..+++|......|.  ..|.+..+++.|.|++||.+..+...|.
T Consensus        94 ~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~  137 (143)
T 2bou_A           94 QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQ  137 (143)
T ss_dssp             EECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSB
T ss_pred             CCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCc
Confidence            35677765455676  6899999999999999999887777664

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=95.01  E-value=0.0069  Score=38.87  Aligned_cols=48  Identities=27%  Similarity=0.564  Sum_probs=33.5

Q ss_pred             CCCceEe---cccccccccCCCCCccceeecCCCceEEeccCCeEEccC-Ccc
Q psy11864         65 KPGFSAI---FMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSD-GKI  113 (193)
Q Consensus        65 ~~GF~~~---~~~~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~-~~~  113 (193)
                      ..||.+.   ....+++|... ..|.+.|.+..+++.|.|++||.+..+ +++
T Consensus        66 ~~Gy~~~~g~~C~dideC~~~-~~C~~~C~n~~g~y~C~C~~G~~g~~~~g~~  117 (118)
T 1dx5_I           66 PEGYILDDGFICTDIDECENG-GFCSGVCHNLPGTFECICGPDSALAGQIGTD  117 (118)
T ss_dssp             CTTEEEETTTEEEECCHHHHC-SSCSSEEEECSSSEEEEECSSSSCEEEESCC
T ss_pred             CCCccCCCCCccccccccCCC-CCCcCeEEeCCCCEEEECCCCCccCCCCCCC
Confidence            3677643   33356777652 467778999999999999999987655 443

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=94.88  E-value=0.024  Score=33.75  Aligned_cols=35  Identities=43%  Similarity=1.066  Sum_probs=21.7

Q ss_pred             ccccccCCCCCcc-ceeecCCCceEEeccCCeEEccC
Q psy11864         75 EFDECALEDHGCE-HTCKNILGGYECSCKIGYELHSD  110 (193)
Q Consensus        75 ~~~~c~~~~~~c~-~~c~~~~~~~~c~c~~g~~l~~~  110 (193)
                      .+++|... ..|. ..|.+..+++.|.|++||.+..+
T Consensus        43 dideC~~~-~~C~~~~C~n~~g~y~C~C~~G~~g~~~   78 (82)
T 1emn_A           43 DTDECSVG-NPCGNGTCKNVIGGFECTCEEGFEPGPM   78 (82)
T ss_dssp             ECCGGGTC-CTTSSSCEEECSSSEEECCSSSSCCCSS
T ss_pred             CcccccCC-CCCCCCEeECCCCCEEeECCCCeEeCCC
Confidence            45666532 2343 46777777777777777765544

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=94.72  E-value=0.033  Score=33.41  Aligned_cols=41  Identities=37%  Similarity=0.808  Sum_probs=30.7

Q ss_pred             ccccccCCCCCccc-eeecCCCceEEeccCCeEEcc-CCcccc
Q psy11864         75 EFDECALEDHGCEH-TCKNILGGYECSCKIGYELHS-DGKICL  115 (193)
Q Consensus        75 ~~~~c~~~~~~c~~-~c~~~~~~~~c~c~~g~~l~~-~~~~C~  115 (193)
                      ++++|......|.+ .|.+..+++.|.|++||.+.. ++..|.
T Consensus         2 dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~   44 (86)
T 1lmj_A            2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM   44 (86)
T ss_dssp             CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEE
T ss_pred             ccccccCCCCCCCCCEEECCCCCEEeeCCCCcCccCCCCCccC
Confidence            35677766556754 899999999999999998753 355554

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=94.72  E-value=0.012  Score=35.47  Aligned_cols=50  Identities=36%  Similarity=0.764  Sum_probs=36.0

Q ss_pred             CCCceEe----cccccccccCCCCCccceeecCCCceEEec--cCCeEEccCCccccc
Q psy11864         65 KPGFSAI----FMKEFDECALEDHGCEHTCKNILGGYECSC--KIGYELHSDGKICLD  116 (193)
Q Consensus        65 ~~GF~~~----~~~~~~~c~~~~~~c~~~c~~~~~~~~c~c--~~g~~l~~~~~~C~~  116 (193)
                      ..||.+.    ....+++|..  ..|.+.|.+..+++.|.|  .+||.+..+...|.+
T Consensus        30 ~~G~~~~~~g~~C~dideC~~--~~C~~~C~n~~g~y~C~C~g~~G~~~~~~~~~C~d   85 (87)
T 1z6c_A           30 PEGYRYNLKSKSCEDIDECSE--NMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEV   85 (87)
T ss_dssp             STTCEEETTTTEEECCCHHHH--SCCSSEECCCSSSCCEECCSSSCCBCCTTSSSCBC
T ss_pred             CCCceECCCCCcCCCcCeeCC--CCCCCEEEccCCCEEEECCCCcCCcccCCCCcceE
Confidence            4566642    2335677753  457789999999999999  688888777776653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=94.46  E-value=0.024  Score=43.35  Aligned_cols=41  Identities=24%  Similarity=0.673  Sum_probs=35.7

Q ss_pred             ccccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         75 EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        75 ~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ..+.|...+++|.+.|+..++.+.|.|+.||. ..++++|..
T Consensus       303 ~~n~C~~~~g~C~~lCl~~~~~~~C~C~~g~~-~~d~~~C~~  343 (349)
T 3v64_C          303 GKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR-KINSHACAL  343 (349)
T ss_dssp             CCCTTTTGGGGCSSEEECCTTSCEEECCTTEE-EETTTEEEE
T ss_pred             ccCcccCCCCCcccEeecCCCCCeeECCCCCc-CCCCCcccc
Confidence            34678888889999999999999999999999 888888863

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=94.41  E-value=0.044  Score=37.04  Aligned_cols=41  Identities=32%  Similarity=0.749  Sum_probs=32.3

Q ss_pred             ccccccCCCCCc-cceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         75 EFDECALEDHGC-EHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        75 ~~~~c~~~~~~c-~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ++++|... ..| .+.|.+..+++.|.|++||.+..++..|.+
T Consensus         2 dideC~~~-~~C~~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d   43 (162)
T 1uzk_A            2 DVNECLDP-TTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD   43 (162)
T ss_dssp             CCCGGGST-TSSBTSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred             ccccCCCC-CCCCCCEeECCCCCEEEeCCCCCeECCCCCcccC
Confidence            35677642 245 368999999999999999999888888864

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=94.02  E-value=0.045  Score=32.51  Aligned_cols=38  Identities=42%  Similarity=1.024  Sum_probs=28.0

Q ss_pred             ccccccCCCCCccc-eeecCCCceEEeccCCeEEccCCcccc
Q psy11864         75 EFDECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        75 ~~~~c~~~~~~c~~-~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      ++++|.. ...|.+ .|.+..+++.|.|++||.+  ++..|.
T Consensus         4 dideC~~-~~~C~~g~C~n~~g~y~C~C~~Gy~~--~g~~C~   42 (82)
T 1emn_A            4 DMDECKE-PDVCKHGQCINTDGSYRCECPFGYIL--AGNECV   42 (82)
T ss_dssp             CCCSSSS-TTSCSSSEECCCSSCCCEECCTTEEE--ETTEEE
T ss_pred             ccccCCC-CCCcCCCEEEecCCCEEEECCCCeEC--CCCccC
Confidence            4567765 345654 8999999999999999986  344554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.93  E-value=0.037  Score=45.81  Aligned_cols=42  Identities=33%  Similarity=0.825  Sum_probs=36.2

Q ss_pred             ccccccCCCCCccceeecCC--CceEEeccCCeEEccCCccccc
Q psy11864         75 EFDECALEDHGCEHTCKNIL--GGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        75 ~~~~c~~~~~~c~~~c~~~~--~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ..++|...+.+|.+.|...+  .++.|.|++||.+..++++|..
T Consensus       271 ~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~  314 (619)
T 3s94_A          271 ATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD  314 (619)
T ss_dssp             CCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCS
T ss_pred             ccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCC
Confidence            35678888889999999876  4699999999999999999975

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=93.74  E-value=0.019  Score=42.47  Aligned_cols=40  Identities=28%  Similarity=0.825  Sum_probs=30.3

Q ss_pred             ccccccCCCCCcc--ceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         75 EFDECALEDHGCE--HTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        75 ~~~~c~~~~~~c~--~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      +.++|....+.|.  ..|.+..+++.|.|.+||.  .++..|.+
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~--GnG~~C~d   45 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYT--GNGRQCVA   45 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEE--ECSSSEEE
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCC--CCCCcCCC
Confidence            4678876667786  4799999999999999997  56667764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=93.47  E-value=0.12  Score=44.00  Aligned_cols=55  Identities=31%  Similarity=0.759  Sum_probs=38.2

Q ss_pred             cccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc--------CCCCCcccCCCCccC
Q psy11864         76 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD--------ACGGILNTPNGTLTS  131 (193)
Q Consensus        76 ~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~--------~C~~~~~~~~g~i~S  131 (193)
                      .++|...+..|.+.|.+..+++.|.|++||.+ .++..|.+        .|++...+..|.+..
T Consensus       312 ~~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l-~~g~~C~dideC~~~~~C~~~C~n~~gsy~C  374 (791)
T 3m0c_C          312 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTCSQLCVNLEGGYKC  374 (791)
T ss_dssp             CCSTTTGGGGCSSEEEECSBSEEEECCTTCEE-ETTTEEECCCCCSSSSSCTTTCCBCSSCBCC
T ss_pred             cccccccccCccccccCCCCCcccCCCCCCcc-CCCCccccCcccCCCCCCCCeeecCCCCcee
Confidence            34555556678889999999999999999998 66677752        344444444555443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=92.91  E-value=0.074  Score=44.09  Aligned_cols=40  Identities=30%  Similarity=0.569  Sum_probs=33.7

Q ss_pred             cccccCCCCCccceeecCCC-ceEEeccCCeEEccCCcccc
Q psy11864         76 FDECALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        76 ~~~c~~~~~~c~~~c~~~~~-~~~c~c~~g~~l~~~~~~C~  115 (193)
                      .+.|...+++|.+.|...+. ...|.|+.|+.|..++++|.
T Consensus       579 ~n~c~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~~~  619 (628)
T 4a0p_A          579 QHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCG  619 (628)
T ss_dssp             HSTTTTGGGGCSSEEEECTTSCEEEECCTTEEECTTSSCEE
T ss_pred             cccCCCCCCCcchhcccCCCCCeeeeCCCCCEECCCCCcCC
Confidence            46788888999999987654 67899999999999988764

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=92.68  E-value=0.1  Score=25.94  Aligned_cols=29  Identities=38%  Similarity=0.944  Sum_probs=21.2

Q ss_pred             cccccCCCCCcc--ceeecCCCceEEeccCCeE
Q psy11864         76 FDECALEDHGCE--HTCKNILGGYECSCKIGYE  106 (193)
Q Consensus        76 ~~~c~~~~~~c~--~~c~~~~~~~~c~c~~g~~  106 (193)
                      .++|...  .|.  .+|.+..+++.|.|++||.
T Consensus         3 ~d~C~~~--pC~ngg~C~~~~~~~~C~C~~G~~   33 (39)
T 1edm_B            3 GDQCESN--PCLNGGSCKDDINSYECWCPFGFE   33 (39)
T ss_dssp             CCTTTTC--CCCTTCEEEEETTEEEEECCTTCC
T ss_pred             cccCCCC--CCCCCCEeEcCCCceEeECCCCCc
Confidence            3455432  344  4788889999999999996

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=92.61  E-value=0.06  Score=45.89  Aligned_cols=51  Identities=33%  Similarity=0.841  Sum_probs=40.3

Q ss_pred             CCCceE---ecccccccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         65 KPGFSA---IFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        65 ~~GF~~---~~~~~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ..||.+   .....+++|. ....|.+.|.+..+++.|.|.+||.+..++++|.+
T Consensus       338 ~~Gy~l~~g~~C~dideC~-~~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~~  391 (791)
T 3m0c_C          338 PDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA  391 (791)
T ss_dssp             CTTCEEETTTEEECCCCCS-SSSSCTTTCCBCSSCBCCCCCSSEECCSSCCCCEE
T ss_pred             CCCCccCCCCccccCcccC-CCCCCCCeeecCCCCceeecCCCCEeCCCCceeee
Confidence            467765   1233577887 34578899999999999999999999988888864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=92.16  E-value=0.075  Score=44.64  Aligned_cols=51  Identities=33%  Similarity=0.797  Sum_probs=38.2

Q ss_pred             CCCceE---ecccccccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         65 KPGFSA---IFMKEFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        65 ~~GF~~---~~~~~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ..||.+   .....+++|.. ...|.+.|.+..+++.|.|++||.+..++++|.+
T Consensus       320 ~~G~~~~~~~~C~dideC~~-~~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~C~~  373 (699)
T 1n7d_A          320 PDGFQLVAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA  373 (699)
T ss_dssp             CSSSCCCSSSCCCCCCCCSS-SSSCTTTCCBCSSCBCCCCCSSCBCCSSCCCCBC
T ss_pred             CCCeEcCCCCcccCccccCC-CCccccccccCCCCeeeeeecccccCCCCCcccc
Confidence            356664   22335677753 3468889999999999999999999888888864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=91.89  E-value=0.17  Score=42.52  Aligned_cols=39  Identities=36%  Similarity=0.899  Sum_probs=32.0

Q ss_pred             cccccCCCCCccceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         76 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        76 ~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      .++|...+..|.+.|.+..+++.|.|++||.+ .++..|.
T Consensus       294 ~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~-~~~~~C~  332 (699)
T 1n7d_A          294 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCE  332 (699)
T ss_dssp             CCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCC-CSSSCCC
T ss_pred             cccccccccCcCCCcccCCCCcEEeCCCCeEc-CCCCccc
Confidence            45676666778899999999999999999998 5666664

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=91.65  E-value=0.17  Score=33.44  Aligned_cols=39  Identities=33%  Similarity=0.783  Sum_probs=29.9

Q ss_pred             ccccccCCCCCcc-ceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         75 EFDECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        75 ~~~~c~~~~~~c~-~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      ++++|..  ..|. ..|.+..+++.|.|++||.+...+..|.
T Consensus         3 dideC~~--~pC~ng~C~n~~g~y~C~C~~G~~g~~~~~~C~   42 (147)
T 2w86_A            3 DIDECES--SPCINGVCKNSPGSFICECSSESTLDPTKTICI   42 (147)
T ss_dssp             CCCGGGG--CCSBTSEEEEETTEEEEECCTTEEECTTSSBEE
T ss_pred             cCccCcC--CCCCCCEeECCCCCEEeECCCCcccCCCCCeec
Confidence            4567764  2465 3899999999999999999877666664

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=89.94  E-value=0.31  Score=30.98  Aligned_cols=42  Identities=26%  Similarity=0.654  Sum_probs=29.5

Q ss_pred             ccccccCCCCCccceeecC-CCceEEeccCCeEEccC-CcccccCC
Q psy11864         75 EFDECALEDHGCEHTCKNI-LGGYECSCKIGYELHSD-GKICLDAC  118 (193)
Q Consensus        75 ~~~~c~~~~~~c~~~c~~~-~~~~~c~c~~g~~l~~~-~~~C~~~C  118 (193)
                      .+++|.  ...|.+.|.+. .+++.|.|++||.+... ...|...|
T Consensus         3 dideC~--~~pC~~~C~~~~~g~y~C~C~~Gy~g~~~~~~~C~~~C   46 (118)
T 1dx5_I            3 PVDPCF--RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFC   46 (118)
T ss_dssp             CCCGGG--GCCCSSEEEECSSSCEEEECCTTEEEETTEEEEEEECC
T ss_pred             ccccCC--CCCCCCCCCCCCCCCEEeECCCCccccCCCCCcccccc
Confidence            356674  34677899999 89999999999987643 22344434

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=89.84  E-value=0.2  Score=27.96  Aligned_cols=30  Identities=37%  Similarity=0.866  Sum_probs=22.5

Q ss_pred             ccccccCCCCCcc----ceeecCCCceEEeccCCeE
Q psy11864         75 EFDECALEDHGCE----HTCKNILGGYECSCKIGYE  106 (193)
Q Consensus        75 ~~~~c~~~~~~c~----~~c~~~~~~~~c~c~~g~~  106 (193)
                      ..++|...  .|.    .+|.+..+++.|.|++||.
T Consensus        10 ~~d~C~sn--PC~nga~gtC~~~~g~y~C~C~~Gy~   43 (61)
T 2k2s_B           10 TPAACSSN--PCGPEAAGTCKETNSGYICRCNQGYR   43 (61)
T ss_dssp             SCCHHHHC--SSCSSSCCEEEECSSEEEEECCTTEE
T ss_pred             CCCcCcCC--CCcCCCccccccCCCceEeECCCCCc
Confidence            34566532  343    4799999999999999997

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=88.94  E-value=0.61  Score=30.52  Aligned_cols=37  Identities=38%  Similarity=0.816  Sum_probs=27.6

Q ss_pred             cccccccCCC-CCcc--ceeecCCCceEEeccCCeEEccC
Q psy11864         74 KEFDECALED-HGCE--HTCKNILGGYECSCKIGYELHSD  110 (193)
Q Consensus        74 ~~~~~c~~~~-~~c~--~~c~~~~~~~~c~c~~g~~l~~~  110 (193)
                      ..+++|.... ..|.  ..|.+..+++.|.|++||.+...
T Consensus        42 ~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~   81 (143)
T 2bou_A           42 DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSG   81 (143)
T ss_dssp             EECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTC
T ss_pred             CccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcC
Confidence            3567787653 2565  58999999999999999998654

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=88.05  E-value=1.2  Score=29.45  Aligned_cols=30  Identities=37%  Similarity=0.956  Sum_probs=22.0

Q ss_pred             ccccccCCCCCcc--ceeecCCCceEEeccCCeE
Q psy11864         75 EFDECALEDHGCE--HTCKNILGGYECSCKIGYE  106 (193)
Q Consensus        75 ~~~~c~~~~~~c~--~~c~~~~~~~~c~c~~g~~  106 (193)
                      ++++|...  .|.  .+|.+..+++.|.|++||.
T Consensus        47 dideC~~~--pC~n~g~C~~~~~~y~C~C~~G~~   78 (146)
T 1x7a_L           47 DGDQCEPN--PCLNGGLCKDDINSYECWCQVGFE   78 (146)
T ss_dssp             ---CCSSC--SSCTTCEEEECSSCEEEECCSSEE
T ss_pred             CcCcCCCC--CCCCCCEeECCCCCEEEecCCCCc
Confidence            56777643  454  4899999999999999997

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=86.41  E-value=0.54  Score=30.69  Aligned_cols=43  Identities=23%  Similarity=0.607  Sum_probs=31.2

Q ss_pred             CCCceEeccc-ccccccCCCCCccceeecCCCceEEeccCCeEE
Q psy11864         65 KPGFSAIFMK-EFDECALEDHGCEHTCKNILGGYECSCKIGYEL  107 (193)
Q Consensus        65 ~~GF~~~~~~-~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l  107 (193)
                      ..||...... .+++|..........|.+..+++.|.|++||..
T Consensus        85 ~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G  128 (143)
T 4d90_A           85 PRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMG  128 (143)
T ss_dssp             CTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCBS
T ss_pred             cCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCcc
Confidence            4677665554 667776443333458999999999999999974

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=85.37  E-value=0.97  Score=29.28  Aligned_cols=33  Identities=48%  Similarity=1.098  Sum_probs=22.7

Q ss_pred             ccccccCCCCCccc--eeecCCCceEEeccCCeEE
Q psy11864         75 EFDECALEDHGCEH--TCKNILGGYECSCKIGYEL  107 (193)
Q Consensus        75 ~~~~c~~~~~~c~~--~c~~~~~~~~c~c~~g~~l  107 (193)
                      ++++|......|..  .|.+..+++.|.|++||..
T Consensus         4 dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G   38 (135)
T 2vj3_A            4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG   38 (135)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEES
T ss_pred             ccccccCCCCCCCCCCEeECCCCCEEEECCCCCcC
Confidence            35666655555654  6888888888888888863

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=84.86  E-value=1  Score=23.99  Aligned_cols=30  Identities=37%  Similarity=0.857  Sum_probs=21.1

Q ss_pred             ccccCC-CCCcc--ceee--cCCCceEEeccCCeE
Q psy11864         77 DECALE-DHGCE--HTCK--NILGGYECSCKIGYE  106 (193)
Q Consensus        77 ~~c~~~-~~~c~--~~c~--~~~~~~~c~c~~g~~  106 (193)
                      ++|... ...|.  .+|.  +..+++.|.|++||.
T Consensus         4 ~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~   38 (53)
T 1egf_A            4 PGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYS   38 (53)
T ss_dssp             CCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCC
T ss_pred             ccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCc
Confidence            455442 22454  3788  788899999999996

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=84.79  E-value=0.99  Score=30.96  Aligned_cols=45  Identities=29%  Similarity=0.649  Sum_probs=33.5

Q ss_pred             CCCceEe---cccccccccCC--CCCcc--ceeecCC-----CceEEeccCCeEEcc
Q psy11864         65 KPGFSAI---FMKEFDECALE--DHGCE--HTCKNIL-----GGYECSCKIGYELHS  109 (193)
Q Consensus        65 ~~GF~~~---~~~~~~~c~~~--~~~c~--~~c~~~~-----~~~~c~c~~g~~l~~  109 (193)
                      ..||...   ....+++|...  ...|.  ..|.+..     +++.|.|.+||....
T Consensus        30 ~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~   86 (186)
T 1z1y_A           30 NEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE   86 (186)
T ss_dssp             CTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEET
T ss_pred             CCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCC
Confidence            4677765   44466788754  44576  4799998     899999999998754

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=84.50  E-value=1.2  Score=24.10  Aligned_cols=32  Identities=16%  Similarity=0.142  Sum_probs=19.2

Q ss_pred             cccccCCCCCcccee-----ecCCCceEEeccCCeEE
Q psy11864         76 FDECALEDHGCEHTC-----KNILGGYECSCKIGYEL  107 (193)
Q Consensus        76 ~~~c~~~~~~c~~~c-----~~~~~~~~c~c~~g~~l  107 (193)
                      .++|....-.-..+|     ....+.+.|.|++||..
T Consensus         8 ~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G   44 (55)
T 3u7u_G            8 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTG   44 (55)
T ss_dssp             CCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEES
T ss_pred             CCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcC
Confidence            355544322223467     35667899999999973

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=83.29  E-value=1.9  Score=21.99  Aligned_cols=19  Identities=37%  Similarity=0.861  Sum_probs=15.8

Q ss_pred             ceee--cCCCceEEeccCCeE
Q psy11864         88 HTCK--NILGGYECSCKIGYE  106 (193)
Q Consensus        88 ~~c~--~~~~~~~c~c~~g~~  106 (193)
                      .+|.  ...+++.|.|++||.
T Consensus        15 g~C~~~~~~~~~~C~C~~G~~   35 (45)
T 1a3p_A           15 GVXMHIESLDSYTCNCVIGYS   35 (45)
T ss_dssp             CEEEECTTTSSEEEECCTTEE
T ss_pred             CEEEeecCCCCEEEEcCCCCc
Confidence            3676  677899999999996

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=82.76  E-value=1.1  Score=37.04  Aligned_cols=45  Identities=31%  Similarity=0.625  Sum_probs=34.2

Q ss_pred             CCCceE--ecccccccccCCCCCccc-----eeecCCCceEEe-ccCCeEEcc
Q psy11864         65 KPGFSA--IFMKEFDECALEDHGCEH-----TCKNILGGYECS-CKIGYELHS  109 (193)
Q Consensus        65 ~~GF~~--~~~~~~~~c~~~~~~c~~-----~c~~~~~~~~c~-c~~g~~l~~  109 (193)
                      ..||..  ..+..+++|......|..     .|.+..+++.|. |++||....
T Consensus        31 ~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~   83 (634)
T 1yo8_A           31 PVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQ   83 (634)
T ss_dssp             CTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECC
T ss_pred             CCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCc
Confidence            356654  345567889776666865     799999999998 999998654

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=81.15  E-value=1.9  Score=27.85  Aligned_cols=43  Identities=26%  Similarity=0.624  Sum_probs=28.9

Q ss_pred             CCCceEeccc-ccccccCCCCCccceeecCCCceEEeccCCeEE
Q psy11864         65 KPGFSAIFMK-EFDECALEDHGCEHTCKNILGGYECSCKIGYEL  107 (193)
Q Consensus        65 ~~GF~~~~~~-~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l  107 (193)
                      ..||...... ..++|....-.....|.+..+++.|.|.+||..
T Consensus        33 ~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G   76 (135)
T 2vj3_A           33 LQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEG   76 (135)
T ss_dssp             CTTEESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEES
T ss_pred             CCCCcCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCcC
Confidence            3566554432 456676433333458999999999999999973

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=81.09  E-value=3.4  Score=31.98  Aligned_cols=45  Identities=16%  Similarity=0.287  Sum_probs=19.8

Q ss_pred             CCCCceEecccccccccCCCCC------ccceeecCCCceEEeccCCeEEc
Q psy11864         64 QKPGFSAIFMKEFDECALEDHG------CEHTCKNILGGYECSCKIGYELH  108 (193)
Q Consensus        64 ~~~GF~~~~~~~~~~c~~~~~~------c~~~c~~~~~~~~c~c~~g~~l~  108 (193)
                      .++||+++|......|..+...      +...-.........+|.+||.|.
T Consensus         2 ~~~gw~~~~~c~~~~C~~p~~~~ng~~~~~~~~~~~g~~v~~~C~~Gy~l~   52 (403)
T 1zjk_A            2 SMTGWKIHYTSTAHACPYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELL   52 (403)
T ss_dssp             -----------CCCCBCCCCCCTTEEESSCCSCBCTTCEEEEEECTTEEEE
T ss_pred             CCCceEEEEEECCccCcCCCCCCCceEcccCCccccCCEEEEEeCCCCEEc
Confidence            3579999998877788765321      11111223345678899999984

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=80.59  E-value=2  Score=35.70  Aligned_cols=39  Identities=33%  Similarity=0.749  Sum_probs=30.0

Q ss_pred             ccccccCCCCCcc--ceeecCC----CceEEeccCCeEEccCCcccc
Q psy11864         75 EFDECALEDHGCE--HTCKNIL----GGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        75 ~~~~c~~~~~~c~--~~c~~~~----~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      .+++|......|.  ..|.+..    +++.|.|++||..  ++..|.
T Consensus       101 dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~G--dG~~Ce  145 (634)
T 1yo8_A          101 PENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG--DGLICG  145 (634)
T ss_dssp             ECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEE--SSSSEE
T ss_pred             ccccccCCCcccccCccccccccccccceeeeccCCccc--cCcccc
Confidence            4677876666786  5899988    9999999999974  445564

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	6e-12
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	7e-12
d1kigl_	51	g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo	8e-12
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	8e-12
d2qqma3	108	b.23.1.1 (A:156-263) Mannose-binding protein assoc	1e-11
d2qqma3	108	b.23.1.1 (A:156-263) Mannose-binding protein assoc	1e-09
d1autl2	50	g.3.11.1 (L:97-146) Activated protein c (autoproth	3e-11
d2p3ua1	51	g.3.11.1 (A:87-137) Factor X, N-terminal module {H	4e-11
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	6e-11
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	1e-10
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	2e-10
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	2e-10
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	4e-10
d2bz6l1	53	g.3.11.1 (L:90-142) Coagulation factor VIIa {Human	6e-10
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	7e-10
d1ijqa2	50	g.3.11.1 (A:643-692) Low density lipoprotein (LDL)	9e-10
d1rfnb_	57	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	1e-09
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	5e-09
d1nt0a2	114	b.23.1.1 (A:165-278) Mannose-binding protein assoc	6e-09
d1nt0a2	114	b.23.1.1 (A:165-278) Mannose-binding protein assoc	3e-08
d1szba1	121	b.23.1.1 (A:3-123) Mannose-binding protein associa	7e-09
d1szba1	121	b.23.1.1 (A:3-123) Mannose-binding protein associa	3e-07
d1nzia1	117	b.23.1.1 (A:1-117) Complement C1S component {Human	1e-08
d1nzia1	117	b.23.1.1 (A:1-117) Complement C1S component {Human	9e-07
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	4e-08
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	6e-08
d1sppb_	112	b.23.1.1 (B:) Major seminal plasma glycoprotein PS	2e-07
d1sppb_	112	b.23.1.1 (B:) Major seminal plasma glycoprotein PS	0.004
d1sppa_	109	b.23.1.1 (A:) Major seminal plasma glycoprotein PS	5e-06
d1sfpa_	111	b.23.1.1 (A:) Acidic seminal fluid protein (ASFP)	9e-06
d1sfpa_	111	b.23.1.1 (A:) Acidic seminal fluid protein (ASFP)	6e-05
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	4e-05
d1gl4a2	40	g.3.11.5 (A:359-398) EGF-like domain of nidogen-1	4e-04
d1emoa2	39	g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sa	6e-04

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 6e-12
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
           +EC          C N  G Y C C   +EL+     C+D
Sbjct: 4   NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 7e-12
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 77  DECAL---EDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
           DEC +   E   C+H C N LGG+ CSC+ GY LH + + C +
Sbjct: 2   DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (134), Expect = 8e-12
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 79  CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDA----CGGIL 122
           C+L++ GC+  C+       CSC  GY L  D K C+      CG   
Sbjct: 1   CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPCGKFT 48

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (134), Expect = 8e-12
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
           DEC  +   C   C N+ GGY+C C+ G++L    K C  
Sbjct: 2   DECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA 40

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 1e-11
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 6/75 (8%)

Query: 4   KFQSFEIENHDQ------CTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKF 57
           +F+SF++E          C YD +EI DG     P IG YCG K P  I+SS   L + F
Sbjct: 33  EFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVF 92

Query: 58  VSDGSVQKPGFSAIF 72
            +D ++ K GFSA +
Sbjct: 93  YTDSAIAKEGFSANY 107

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-09
 Identities = 16/67 (23%), Positives = 25/67 (37%)

Query: 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKI 186
           G + SP FP+ Y  +  C + + AP    I L F  FD+E ++            +    
Sbjct: 1   GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWD 60

Query: 187 GDSFKSQ 193
           G      
Sbjct: 61  GFPDVGP 67

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (130), Expect = 3e-11
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 79  CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
           C+L++ GC H C   +G   CSC  GY+L  D   C  A 
Sbjct: 2   CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 41

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (130), Expect = 4e-11
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 79  CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLDAC 118
           C+L++  C+  C        CSC  GY L  +GK C+   
Sbjct: 3   CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 42

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (128), Expect = 6e-11
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
           +EC   + GC H C ++  GYEC C  G++L    + C
Sbjct: 3   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRC 39

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 1e-10
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 77  DECA-LEDHGCEHTCKNILGGYECSCKIGYELHSDGKIC 114
           +EC    D  C H C N +GGY CSC   Y LH D K C
Sbjct: 1   NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 2e-10
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 77  DECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKICL 115
           DEC  +   C    C N  G Y C C  G++L  +   C+
Sbjct: 3   DECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 42

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (123), Expect = 2e-10
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 77  DECALEDHG---CEHTCKNILGGYECSCKIGYELHSDGKIC 114
           DEC         C+H C N LGGY CSC++GY LH +   C
Sbjct: 2   DECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTC 42

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 4e-10
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 74  KEFDECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKIC 114
           ++ DEC      C+   C N  G ++C C  GY L+ D ++C
Sbjct: 1   EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 6e-10
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 79  CALEDHGCEHTCKNILGG-YECSCKIGYELHSDGKICLDA----CGGI 121
           C  E+ GCE  C +  G    C C  GY L +DG  C       CG I
Sbjct: 2   CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKI 49

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 7e-10
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)

Query: 77  DECALEDHGC--------EHTCKNILGGYECSCKIGYELHSDGKIC 114
           DECA              +H C N +GGY CSC+ GYEL  D   C
Sbjct: 5   DECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 9e-10
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 6/47 (12%)

Query: 75  EFDECALEDHGCEHTC------KNILGGYECSCKIGYELHSDGKICL 115
             +   L + GC++ C            + C+C  G  L  D + CL
Sbjct: 3   WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 1e-09
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 79  CALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICLDA----CGGI 121
           C +++  CE  CKN       CSC  GY L  + K C  A    CG +
Sbjct: 3   CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRV 50

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 5e-09
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD 116
           DEC   D      C N  G Y C C  GY L   G  C+D
Sbjct: 6   DECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVD 43

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 114

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 6e-09
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 118 CGG-ILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCE 176
           C G +    +G L+SP +P  Y K  +C + I     + I+L+F        +  ++ C 
Sbjct: 1   CSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH-PEAQCP 59

Query: 177 YDNLT 181
           YD+L 
Sbjct: 60  YDSLK 64

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 114

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.0 bits (113), Expect = 3e-08
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 8   FEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPG 67
            E+    QC YD ++I+          G +CG  LPP I++   K+ I F +D S    G
Sbjct: 50  VEMHPEAQCPYDSLKIQTDK----REYGPFCGKTLPPRIETDSNKVTITFTTDESGNHTG 105

Query: 68  FSAIF 72
           +   +
Sbjct: 106 WKIHY 110

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 7e-09
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 5   FQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP----DIKSSGTKLMIKFVSD 60
           F  F++E    C YD+V++  G    + + G                S G+ L I F SD
Sbjct: 44  FTHFDLELSHLCEYDFVKLSSGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDITFRSD 103

Query: 61  GSVQKP--GFSAIF 72
            S +KP  GF A +
Sbjct: 104 YSNEKPFTGFEAFY 117

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 3e-07
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 119 GGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSC 175
                   G L SP FP  Y  ++   W + APP YR+ L FTHFD+E ++L +   
Sbjct: 3   PKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDF 59

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 1e-08
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 5   FQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP----DIKSSGTKLMIKFVSD 60
           F   +IE  + C YD V+I  G   +  + G             + +    KL + F SD
Sbjct: 39  FTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSD 98

Query: 61  GSVQK--PGFSAIF 72
            S ++   GF+A +
Sbjct: 99  FSNEERFTGFAAYY 112

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 9e-07
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query: 127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDI 165
           G + SP++P  Y       W+I  P  Y I L FTH DI
Sbjct: 6   GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDI 44

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (108), Expect = 4e-08
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYEL-HSDGKIC 114
           DEC      C   C N+ G +EC C     L    G  C
Sbjct: 3   DECE-NGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 40

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 6e-08
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 77  DECALEDHGCEH-TCKNILGGYECSCKIGYEL-HSDGKICL 115
           DEC +    C    C N  G +EC C  GYE      K C+
Sbjct: 4   DECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM 44

>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]} Length = 112

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-II
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSC 175
           D CG ++   +G++++            C W I+  P  ++ +   + ++     +    
Sbjct: 7   DECGRVIKDTSGSISNTDRQ-----KNLCTWTILMKPDQKVRMAIPYLNLACGKEYVEVF 61

Query: 176 EYDN 179
           +   
Sbjct: 62  DGLL 65

>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]} Length = 112

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-II
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 33.5 bits (75), Expect = 0.004
 Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 13  HDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIF 72
           +  C  +YVE+ DG            G        S+   + IK+          F   F
Sbjct: 50  NLACGKEYVEVFDGLLSGPSYGKLCAGA--AIVFLSTANTMTIKYNRISGNSSSPFLIYF 107

>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]} Length = 109

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-I
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.5 bits (96), Expect = 5e-06
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 117 ACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLF 171
           ACGG L    GT+ +   P        C+W +   P+Y++ ++    ++     +
Sbjct: 5   ACGGRLTDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLTCGKEY 54

>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]} Length = 111

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Acidic seminal fluid protein (ASFP)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.1 bits (95), Expect = 9e-06
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 118 CGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEY 177
           CGGIL   +G + +      Y     C+W I  PP+Y + ++  +  +  N       + 
Sbjct: 7   CGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLNCNKESLEIIDG 61

Query: 178 DN 179
             
Sbjct: 62  LP 63

>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]} Length = 111

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Acidic seminal fluid protein (ASFP)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.8 bits (89), Expect = 6e-05
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 12  NHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAI 71
               C  + +EI DG      +     G     D +SSG+ + +K++ +       +  +
Sbjct: 47  LQLNCNKESLEIIDGLPGSPVLGKICEGS--LMDYRSSGSIMTVKYIREPEHPASFYEVL 104

Query: 72  FMKE 75
           + ++
Sbjct: 105 YFQD 108

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 4e-05
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 74  KEFDECALEDHGCEH--TCKNILGGYECSCKIGYE 106
           ++ DEC+L  + CEH   C N LG +EC C  GY 
Sbjct: 1   QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT 35

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.4 bits (79), Expect = 4e-04
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 79  CALEDHGCEH--TCKNILGGYECSCKIGYELHSDGKICLD 116
           CA   H C     C++   G+ C C   Y    +G+ C+ 
Sbjct: 2   CANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQCVA 39

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 6e-04
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 77  DECALEDHGCEHTCKNILGGYECSCKIGYE 106
           DEC++ +     TCKN++GG+EC+C+ G+E
Sbjct: 2   DECSVGNPCGNGTCKNVIGGFECTCEEGFE 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1szba1	121	Mannose-binding protein associated serine protease	99.82
d1nzia1	117	Complement C1S component {Human (Homo sapiens) [Ta	99.81
d2qqma3	108	Mannose-binding protein associated serine protease	99.79
d1nt0a2	114	Mannose-binding protein associated serine protease	99.77
d2qqma3	108	Mannose-binding protein associated serine protease	99.71
d1sppb_	112	Major seminal plasma glycoprotein PSP-II {Pig (Sus	99.69
d1sppa_	109	Major seminal plasma glycoprotein PSP-I {Pig (Sus	99.66
d1nzia1	117	Complement C1S component {Human (Homo sapiens) [Ta	99.59
d1sfpa_	111	Acidic seminal fluid protein (ASFP) {Cow (Bos taur	99.58
d1szba1	121	Mannose-binding protein associated serine protease	99.54
d1nt0a2	114	Mannose-binding protein associated serine protease	99.51
d1sppb_	112	Major seminal plasma glycoprotein PSP-II {Pig (Sus	99.49
d1sfpa_	111	Acidic seminal fluid protein (ASFP) {Cow (Bos taur	99.44
d1sppa_	109	Major seminal plasma glycoprotein PSP-I {Pig (Sus	99.4
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.58
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.54
d1szba2	45	Mannose-binding protein associated serine protease	98.54
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.53
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.53
d1nt0a3	45	Mannose-binding protein associated serine protease	98.51
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	98.44
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	98.43
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	98.35
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.31
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	98.23
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.15
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	98.14
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.08
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.93
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	96.69
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	95.49
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	95.06
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	94.74
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	94.14
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	93.49
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	93.27
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	93.26
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	90.17
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	89.89
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	87.4

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.4e-21  Score=123.68  Aligned_cols=64  Identities=39%  Similarity=0.696  Sum_probs=58.5

Q ss_pred             ccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCCcc
Q psy11864        123 NTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSF  190 (193)
Q Consensus       123 ~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~~~  190 (193)
                      ....|.|+||+||..||++.+|.|+|.+|++++|.|+|.+|+||...    .|.+|+|+|+||.....
T Consensus         7 ~~~~G~i~SP~yP~~Yp~~~~C~W~I~~p~g~~I~l~f~~fdle~~~----~C~~D~l~i~dg~~~~~   70 (121)
T d1szba1           7 EPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSH----LCEYDFVKLSSGAKVLA   70 (121)
T ss_dssp             CCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCCT----TSCSSEEEEESSSSEEE
T ss_pred             CCCCeEEeCCCCCCCCCCCCeEEEEEEeCCCceeEEEeeeeeeeeec----cccccceeeecCCcccc
Confidence            34579999999999999999999999999999999999999999875    89999999999977544

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8e-21  Score=123.28  Aligned_cols=62  Identities=34%  Similarity=0.636  Sum_probs=55.2

Q ss_pred             CCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCCcc
Q psy11864        125 PNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDSF  190 (193)
Q Consensus       125 ~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~~~  190 (193)
                      ..|.|+||+||+.||++.+|+|.|++|++++|.|+|.+|+||...    .|.+|+|+|+||.+...
T Consensus         4 ~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~l~f~~f~le~~~----~C~~D~l~I~dg~~~~~   65 (117)
T d1nzia1           4 MYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSE----NCAYDSVQIISGDTEEG   65 (117)
T ss_dssp             SEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCG----GGCSSEEEEEC---CCE
T ss_pred             cEEEEeCCCCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeeEeeec----ccccceeEEecCCCCCC
Confidence            469999999999999999999999999999999999999999865    89999999999987654

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5e-20  Score=117.76  Aligned_cols=64  Identities=31%  Similarity=0.605  Sum_probs=55.7

Q ss_pred             CCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCC--CCCCCCcEEEEEeCCCCcc
Q psy11864        127 GTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLF--QSSCEYDNLTVFSKIGDSF  190 (193)
Q Consensus       127 g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~--~~~C~~D~l~I~dg~~~~~  190 (193)
                      |.|+||+||+.||++.+|.|+|++|++++|+|+|.+|+|+.....  ...|.+|+|+|+||.+...
T Consensus         1 G~i~SP~yP~~Y~~~~~C~w~I~~p~~~~I~l~f~~f~l~~~~~~~~~~~C~~D~l~i~dg~~~~~   66 (108)
T d2qqma3           1 GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVG   66 (108)
T ss_dssp             EEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC----CCCSSCSSEEEEESSSTTTS
T ss_pred             CEEeCCCCCCCCCCCCeEEEEEEeCCCceeeeEEEEEEeecccccccCCCccccEEEEEeccccCC
Confidence            689999999999999999999999999999999999999875321  2469999999999987654

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1e-19  Score=117.45  Aligned_cols=69  Identities=30%  Similarity=0.690  Sum_probs=56.1

Q ss_pred             CCCC-cccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEe-eEEeecCCCCCCCCCCcEEEEEeCCCC
Q psy11864        118 CGGI-LNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFT-HFDIEGNNLFQSSCEYDNLTVFSKIGD  188 (193)
Q Consensus       118 C~~~-~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~-~f~l~~~~~~~~~C~~D~l~I~dg~~~  188 (193)
                      ||+. +++.+|.|+||+||+.||++.+|.|.|.+|++++|+|+|. .|+||...  ...|.+|+|+|++|...
T Consensus         1 Cgg~~~~~~~G~i~SP~yP~~Y~~~~~C~w~I~~p~g~~i~l~F~~~f~le~~~--~~~c~~d~l~v~~~~~~   71 (114)
T d1nt0a2           1 CSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHP--EAQCPYDSLKIQTDKRE   71 (114)
T ss_dssp             CEEEEECSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC------C--CEEEEECSSCE
T ss_pred             CcCCcCcCCCEEEECCCCCCCCCCCCeEEEEEEeCCCCceeeEEeeeecccccc--ccccccceeeeeeeccc
Confidence            6774 4678899999999999999999999999999999999996 58997542  24799999999998654

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-17  Score=105.75  Aligned_cols=73  Identities=42%  Similarity=0.749  Sum_probs=66.7

Q ss_pred             CEEEeeEEeecCC------CCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecc
Q psy11864          1 VALKFQSFEIENH------DQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFM   73 (193)
Q Consensus         1 I~l~F~~f~le~~------~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~   73 (193)
                      |+|+|.+|+||..      ..|.+|+|+|++|.....+.++++||...|..++|+++.|+|+|++|....++||+|.|+
T Consensus        30 I~l~f~~f~l~~~~~~~~~~~C~~D~l~i~dg~~~~~~~~~~~Cg~~~p~~~~S~~n~l~i~F~Sd~~~~~~GF~~~yt  108 (108)
T d2qqma3          30 IILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYS  108 (108)
T ss_dssp             EEEEEEEEECCCC----CCCSSCSSEEEEESSSTTTSCEEEEECTTCCCCEEEECSSEEEEEEECCSSCCCCEEEEEEE
T ss_pred             eeeEEEEEEeecccccccCCCccccEEEEEeccccCCccccEEeeccCCCCEEEcCCEEEEEEEECCCCCCCCEEEEEC
Confidence            6899999999864      458899999999988778889999999999999999999999999999999999999884

>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-II
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.69  E-value=1e-17  Score=107.37  Aligned_cols=61  Identities=18%  Similarity=0.585  Sum_probs=55.3

Q ss_pred             ccCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCC
Q psy11864        115 LDACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGD  188 (193)
Q Consensus       115 ~~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~  188 (193)
                      ...||+.+...+|.|.||+||+.|     |.|+|++|++++|.|+|.+|++        .|.+|+|+||||.+.
T Consensus         6 ~~~CGg~l~~~~G~i~SP~~P~~~-----C~W~I~~p~~~~I~l~f~~f~~--------~C~~d~l~I~dg~~~   66 (112)
T d1sppb_           6 PDECGRVIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNL--------ACGKEYVEVFDGLLS   66 (112)
T ss_dssp             GGGTTEEECCSEEEEECCSSCCSE-----EEEEEECCTTCEEEEEEEEEEC--------CBTTEEEEEESSSTT
T ss_pred             CCcCCCEEeCCcceEeCCCCCCCc-----eEEEEecCCcEEEEEEEEehhc--------ccccceeEEEeccCc
Confidence            468999999999999999999776     9999999999999999999997        467799999999754

>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-I
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.66  E-value=4.8e-17  Score=103.78  Aligned_cols=60  Identities=25%  Similarity=0.646  Sum_probs=53.8

Q ss_pred             CCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCCc
Q psy11864        117 ACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGDS  189 (193)
Q Consensus       117 ~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~~  189 (193)
                      .||+.+....|.|+||+||     +.+|.|.|++|++++|+|+|..|++        .|.+|+|+||||....
T Consensus         5 ~Cgg~l~~~~G~i~Sp~yP-----~~~C~W~I~~p~g~~I~l~f~~f~~--------~c~~d~l~i~~g~~~~   64 (109)
T d1sppa_           5 ACGGRLTDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNL--------TCGKEYVEVLEGAPGS   64 (109)
T ss_dssp             SSCEEEECSEEEEECCCSS-----CSEEEEEEECCTTSEEEEEEEEEEC--------CTTTEEEEEESSSTTS
T ss_pred             cCCCEEeCCCEEEeCCCCC-----CCcEEEEEEEccCceeEEEEecccc--------ccceeeeeeecCCCcc
Confidence            5999999999999999998     4589999999999999999999986        4667999999997654

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-15  Score=98.29  Aligned_cols=74  Identities=27%  Similarity=0.483  Sum_probs=62.2

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCC----ceEecCCEEEEEEecCCCCCC--CCceEeccc
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPP----DIKSSGTKLMIKFVSDGSVQK--PGFSAIFMK   74 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~----~i~s~~~~l~v~f~sd~~~~~--~GF~~~~~~   74 (193)
                      |+|+|.+|+||.+..|.+|+|+|++|.......++++||...+.    .++|++|.|+|+|+||.+..+  .||+|+|++
T Consensus        35 I~l~f~~f~le~~~~C~~D~l~I~dg~~~~~~~~~~~~~~~~~~~~~~~~~s~~n~l~i~F~Sd~s~~~~~~GF~~~y~a  114 (117)
T d1nzia1          35 IHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVA  114 (117)
T ss_dssp             EEEEEEEEECCCCGGGCSSEEEEEC---CCEEECSEECCCCSSCCCSEEEEESSSEEEEEEEECSCCTTCCCEEEEEEEE
T ss_pred             EEEEEEeeeEeeecccccceeEEecCCCCCCceeeeecCCCCCCcccceEEEcCCEEEEEEEECCCCCCCCCCEEEEEEE
Confidence            68999999999988999999999999888788889999987643    478999999999999876654  699999986

>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Acidic seminal fluid protein (ASFP)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=1.5e-15  Score=97.06  Aligned_cols=60  Identities=25%  Similarity=0.752  Sum_probs=53.4

Q ss_pred             cCCCCCcccCCCCccCCCCCCCCCCCCceEEEEEcCCCCeEEEEEeeEEeecCCCCCCCCCCcEEEEEeCCCC
Q psy11864        116 DACGGILNTPNGTLTSPSFPDLYIKNKTCIWEIVAPPQYRISLNFTHFDIEGNNLFQSSCEYDNLTVFSKIGD  188 (193)
Q Consensus       116 ~~C~~~~~~~~g~i~Sp~~p~~y~~~~~C~w~I~~~~~~~i~l~F~~f~l~~~~~~~~~C~~D~l~I~dg~~~  188 (193)
                      ..||+.++...|.|+||     |+++.+|+|.|.+|++++|.|+|.+|++        .|.+|+|+|+||.+.
T Consensus         5 ~~Cgg~lt~~~G~i~SP-----y~~~~~C~w~I~~p~g~~I~l~f~~f~~--------~c~~d~v~i~dg~~~   64 (111)
T d1sfpa_           5 TNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQL--------NCNKESLEIIDGLPG   64 (111)
T ss_dssp             CSSCEEECCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEEC--------CTTTEEEEEESSSTT
T ss_pred             cCCCcEEECCceeEcCC-----CCCCCcEEEEEEcCCCceeeEEEeeccc--------ccceeeeeecCCccc
Confidence            58999999999999998     5568899999999999999999999986        466799999999764

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.7e-15  Score=95.36  Aligned_cols=74  Identities=28%  Similarity=0.437  Sum_probs=62.6

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccC----CCceEecCCEEEEEEecCCCCC--CCCceEeccc
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKL----PPDIKSSGTKLMIKFVSDGSVQ--KPGFSAIFMK   74 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~----p~~i~s~~~~l~v~f~sd~~~~--~~GF~~~~~~   74 (193)
                      |+|+|.+|+||.+..|.+|+|+|++|.......++++|+...    +..++|+++.|+|+|+||.+..  .+||++.|++
T Consensus        40 I~l~f~~fdle~~~~C~~D~l~i~dg~~~~~~~~g~~~~~~~~~~~~~~~~S~~n~l~i~F~Sd~s~~~~~~GF~~~y~a  119 (121)
T d1szba1          40 LRLYFTHFDLELSHLCEYDFVKLSSGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAA  119 (121)
T ss_dssp             EEEEEEEEECCCCTTSCSSEEEEESSSSEEEEECSBTTTTCSSSCTTCCEECSSSEEEEEEECCSCCSSCCCEEEEEEEE
T ss_pred             eEEEeeeeeeeeeccccccceeeecCCccccceeccccCCCcCCCCCceEEEcCCEEEEEEEECCCCccCCCCEEEEEEE
Confidence            689999999999899999999999987665666777887654    3479999999999999987665  5799999976

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.5e-14  Score=92.70  Aligned_cols=70  Identities=33%  Similarity=0.703  Sum_probs=57.9

Q ss_pred             CEEEee-EEeecC--CCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEeccc
Q psy11864          1 VALKFQ-SFEIEN--HDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMK   74 (193)
Q Consensus         1 I~l~F~-~f~le~--~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~   74 (193)
                      |+|+|. .|+||.  ...|.+|+|+|+++    ...++++||...|..++|.+|.|+|+|++|....++||++.|++
T Consensus        40 i~l~F~~~f~le~~~~~~c~~d~l~v~~~----~~~~~~~Cg~~~p~~~~S~~n~l~i~F~Sd~~~~~~GF~~~y~s  112 (114)
T d1nt0a2          40 ITLDFVESFDVEMHPEAQCPYDSLKIQTD----KREYGPFCGKTLPPRIETDSNKVTITFTTDESGNHTGWKIHYTS  112 (114)
T ss_dssp             EEEEECSCCBBCCC----C--CEEEEECS----SCEEEEECBSSCCCCEECSSSEEEEEEECCSCCCCCBCEEEEEE
T ss_pred             eeeEEeeeeccccccccccccceeeeeee----ccceecccCCcCCCCeEecCCEEEEEEEECCCCCCCCEEEEEEE
Confidence            578885 488985  45689999999996    44678999999999999999999999999999999999999976

>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-II
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.49  E-value=1.7e-14  Score=92.04  Aligned_cols=68  Identities=22%  Similarity=0.382  Sum_probs=60.2

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEeccc
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMK   74 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~   74 (193)
                      |+|+|.+|+++    |.+|||+|+||.. ....++++||.. |..++|++|.|+|+|++|....++||.+.|..
T Consensus        42 I~l~f~~f~~~----C~~d~l~I~dg~~-~~~~l~~~Cg~~-~~~~~S~sn~l~v~f~s~~~~~~~GF~~~y~~  109 (112)
T d1sppb_          42 VRMAIPYLNLA----CGKEYVEVFDGLL-SGPSYGKLCAGA-AIVFLSTANTMTIKYNRISGNSSSPFLIYFYG  109 (112)
T ss_dssp             EEEEEEEEECC----BTTEEEEEESSST-TSCEEEEESEEE-EEEEECSSSEEEEEEEESSCSCCCCCEEEEEE
T ss_pred             EEEEEEehhcc----cccceeEEEeccC-cceeeeeecCCC-CccccccccEEEEEEEECCCCCCCCEEEEEEE
Confidence            68999999986    7899999999974 467889999965 45899999999999999999999999999965

>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Acidic seminal fluid protein (ASFP)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=8.5e-14  Score=88.68  Aligned_cols=69  Identities=23%  Similarity=0.541  Sum_probs=60.8

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEecccc
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMKE   75 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~~   75 (193)
                      |+|+|.+|+++    |.+|+|+|+||.. ....+.++||.. |+.+.|++|.|+|+|++|....++||++.|.+.
T Consensus        40 I~l~f~~f~~~----c~~d~v~i~dg~~-~~~~~~~~cg~~-~~~~~S~~n~l~v~F~sd~~~~~~GF~~~y~~~  108 (111)
T d1sfpa_          40 VRVSIQYLQLN----CNKESLEIIDGLP-GSPVLGKICEGS-LMDYRSSGSIMTVKYIREPEHPASFYEVLYFQD  108 (111)
T ss_dssp             EEEEEEEEECC----TTTEEEEEESSST-TSCEEEEESEEE-EEEEECSSSEEEEEEEECTTSCCCCCEEEEEEE
T ss_pred             eeEEEeecccc----cceeeeeecCCcc-ceeeeccccCCC-cCCEEeCCCEEEEEEEECCCcCCCCEEEEEEEe
Confidence            68999999985    7899999999865 356789999976 458999999999999999999999999999764

>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-I
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=1.2e-13  Score=87.65  Aligned_cols=67  Identities=18%  Similarity=0.492  Sum_probs=59.2

Q ss_pred             CEEEeeEEeecCCCCCCCcEEEEEeCCCCCCCcccCccCccCCCceEecCCEEEEEEecCCCCCCCCceEeccc
Q psy11864          1 VALKFQSFEIENHDQCTYDYVEIRDGHAPDSPIIGTYCGYKLPPDIKSSGTKLMIKFVSDGSVQKPGFSAIFMK   74 (193)
Q Consensus         1 I~l~F~~f~le~~~~C~~d~l~v~dg~~~~~~~~~~~cg~~~p~~i~s~~~~l~v~f~sd~~~~~~GF~~~~~~   74 (193)
                      |+|+|.+|+++    |.+|+|+|++|... ...++++||.  |..++|.+|.|+|+|+||....++||++.|.+
T Consensus        39 I~l~f~~f~~~----c~~d~l~i~~g~~~-~~~~~~~c~~--~~~~~s~~n~~~i~F~Sd~~~~~~GF~~~y~~  105 (109)
T d1sppa_          39 LLVSIPTLNLT----CGKEYVEVLEGAPG-SKSLGKFCEG--LSILNRGSSGMTVKYKRDSGHPASPYEIIFLR  105 (109)
T ss_dssp             EEEEEEEEECC----TTTEEEEEESSSTT-SCEEEEESEE--EEEEEEECTTCEEEEEECTTCCCCCCEEEEEE
T ss_pred             eEEEEeccccc----cceeeeeeecCCCc-cceeeeecCC--cccceeccceEEEEEEECCCCCCCCEEEEEEE
Confidence            68999999985    78999999999754 5677899985  57799999999999999999999999999975

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.1e-08  Score=50.88  Aligned_cols=42  Identities=29%  Similarity=0.624  Sum_probs=37.4

Q ss_pred             ccccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         75 EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        75 ~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ++++|...+..|.+.|.+.++++.|.|++||.+..+++.|.+
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~D   43 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD   43 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCcccC
Confidence            468898888888899999999999999999999998888753

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.8e-08  Score=50.00  Aligned_cols=39  Identities=36%  Similarity=0.890  Sum_probs=35.0

Q ss_pred             cccccCCCCCccceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         76 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        76 ~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      .++|...+++|.+.|.+.++++.|.|++||.|. ++++|+
T Consensus         2 ~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~-d~~tC~   40 (40)
T d3bpse1           2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRCE   40 (40)
T ss_dssp             SCGGGTGGGGCSSEEEECSSSEEEECCTTCCEE-TTTEEC
T ss_pred             cccCCCCCCCCcCEEEcCCCCEEEECCCCCEEC-CCCcCC
Confidence            578988899999999999999999999999995 777774

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4e-08  Score=50.95  Aligned_cols=41  Identities=44%  Similarity=1.113  Sum_probs=35.3

Q ss_pred             cccccCCCC---CccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         76 FDECALEDH---GCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        76 ~~~c~~~~~---~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      +++|...+.   .|.+.|.++++++.|.|++||.|..++++|.+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence            367766554   68899999999999999999999999999865

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.3e-08  Score=49.82  Aligned_cols=40  Identities=48%  Similarity=0.891  Sum_probs=35.0

Q ss_pred             ccccC-CCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         77 DECAL-EDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        77 ~~c~~-~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ++|.. .+..|.+.|.+.++++.|.|++||.|..++++|..
T Consensus         1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~~   41 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV   41 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCeecC
Confidence            46764 45789999999999999999999999999998864

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.3e-08  Score=49.70  Aligned_cols=40  Identities=38%  Similarity=0.943  Sum_probs=35.1

Q ss_pred             cccccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         76 FDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        76 ~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      +++|.. +..|.+.|.+..+++.|.|++||.|..++++|.+
T Consensus         1 idEC~~-~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2           1 IDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA   40 (41)
T ss_dssp             CCTTTT-TTSCSSCEECSSSCCEECCCTTEEECTTTCCEEE
T ss_pred             CccCCC-CCCCCCEeECCCCCEEeECCCCCeECCCCCcccc
Confidence            367864 5689999999999999999999999999998864

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=3.9e-08  Score=51.00  Aligned_cols=41  Identities=46%  Similarity=1.057  Sum_probs=32.6

Q ss_pred             cccccCCCC---CccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         76 FDECALEDH---GCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        76 ~~~c~~~~~---~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      +++|...+.   .|.+.|.+.++++.|.|++||.|..++++|..
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~~   44 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSA   44 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCcccc
Confidence            367766544   48899999999999999999999999998863

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=7.9e-08  Score=51.05  Aligned_cols=39  Identities=33%  Similarity=0.874  Sum_probs=35.6

Q ss_pred             cccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         78 ECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        78 ~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      .|...+++|.+.|.+.++++.|.|++||.|..|+++|.+
T Consensus         2 ~C~~~NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~   40 (51)
T d2p3ua1           2 LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP   40 (51)
T ss_dssp             GGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             ccCCCCCCcccEeecCCCCeEeEcCCCCEECCCCCcccc
Confidence            366778899999999999999999999999999999975

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.2e-07  Score=50.14  Aligned_cols=38  Identities=39%  Similarity=0.867  Sum_probs=34.9

Q ss_pred             ccCCCCCccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        79 c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      |...+++|.+.|.+.++++.|+|++||.|..|+++|.+
T Consensus         2 C~~~NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~   39 (50)
T d1autl2           2 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHP   39 (50)
T ss_dssp             SSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCCCCcccEeecCCCCeEEECCCCCEECCCCCcccc
Confidence            66678899999999999999999999999999999974

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.35  E-value=1.5e-07  Score=49.98  Aligned_cols=44  Identities=36%  Similarity=0.942  Sum_probs=37.5

Q ss_pred             ccCCCCCccceeecCCCceEEeccCCeEEccCCccccc----CCCCCc
Q psy11864         79 CALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICLD----ACGGIL  122 (193)
Q Consensus        79 c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~----~C~~~~  122 (193)
                      |...+++|.+.|++..+++.|.|++||.|..|+++|.+    +||...
T Consensus         1 C~~~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~pcG~~~   48 (51)
T d1kigl_           1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPCGKFT   48 (51)
T ss_dssp             CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSSCTTCCC
T ss_pred             CCCCCCCcccEeEcCCCcEEeEcCCCCEECCCCCccccCCccCCCCEe
Confidence            55678899999999999999999999999999999975    355543

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.6e-07  Score=49.04  Aligned_cols=42  Identities=48%  Similarity=1.095  Sum_probs=34.5

Q ss_pred             ccccccCCCC--------CccceeecCCCceEEeccCCeEEccCCccccc
Q psy11864         75 EFDECALEDH--------GCEHTCKNILGGYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        75 ~~~~c~~~~~--------~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      ++++|.....        .|.+.|.+++|+|.|.|++||.|..++++|..
T Consensus         3 DidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~~   52 (53)
T d1apqa_           3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred             ecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCCceec
Confidence            4567765543        35678999999999999999999999998864

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.3e-07  Score=48.15  Aligned_cols=39  Identities=33%  Similarity=0.778  Sum_probs=33.8

Q ss_pred             cccccCCCCCccc-eeecCCCceEEeccCCeEEccCCccc
Q psy11864         76 FDECALEDHGCEH-TCKNILGGYECSCKIGYELHSDGKIC  114 (193)
Q Consensus        76 ~~~c~~~~~~c~~-~c~~~~~~~~c~c~~g~~l~~~~~~C  114 (193)
                      +++|......|.+ .|.+++|++.|.|++||.+..++.+|
T Consensus         2 idEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~C   41 (42)
T d1lmja2           2 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC   41 (42)
T ss_dssp             CCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCC
T ss_pred             ccccCCCCCCCCCCEeECCCCCeEEeCCCCCeECcCCCcc
Confidence            5778777777876 89999999999999999998887776

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.7e-07  Score=47.98  Aligned_cols=41  Identities=34%  Similarity=0.870  Sum_probs=34.2

Q ss_pred             ccccccCCCCCcc-ceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         75 EFDECALEDHGCE-HTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        75 ~~~~c~~~~~~c~-~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      ++++|......|. +.|.+++|++.|.|++||.+..++++|+
T Consensus         2 DinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~Ce   43 (43)
T d1uzka2           2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD   43 (43)
T ss_dssp             ECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred             CcccccCCCCCcCCCEEECCCCCeEeECCCCCeECcCCCccC
Confidence            4677876666665 6899999999999999999998888774

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.8e-07  Score=47.36  Aligned_cols=39  Identities=28%  Similarity=0.641  Sum_probs=34.0

Q ss_pred             ccccCCCCCccceeec------CCCceEEeccCCeEEccCCcccc
Q psy11864         77 DECALEDHGCEHTCKN------ILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        77 ~~c~~~~~~c~~~c~~------~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      ++|...+++|.+.|+.      ..+++.|.|+.||.|..|+++|.
T Consensus         5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi   49 (50)
T d1ijqa2           5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL   49 (50)
T ss_dssp             SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred             cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence            5788889999999974      45789999999999999999885

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.7e-06  Score=46.79  Aligned_cols=39  Identities=36%  Similarity=0.785  Sum_probs=34.8

Q ss_pred             cccCCCCCccceeecCCC-ceEEeccCCeEEccCCccccc
Q psy11864         78 ECALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        78 ~c~~~~~~c~~~c~~~~~-~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      .|...+++|.+.|.+.++ ++.|.|++||.|..|+++|..
T Consensus         2 ~C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~   41 (57)
T d1rfnb_           2 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP   41 (57)
T ss_dssp             CTTGGGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEE
T ss_pred             ccCCCCCCcccEeeeCCCCCeEeECCCCCEECCCCCcccc
Confidence            477788899999999865 789999999999999999985

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1e-06  Score=46.92  Aligned_cols=38  Identities=39%  Similarity=0.912  Sum_probs=33.3

Q ss_pred             ccCCCCCccceeecCCC-ceEEeccCCeEEccCCccccc
Q psy11864         79 CALEDHGCEHTCKNILG-GYECSCKIGYELHSDGKICLD  116 (193)
Q Consensus        79 c~~~~~~c~~~c~~~~~-~~~c~c~~g~~l~~~~~~C~~  116 (193)
                      |...+++|.+.|.+..+ .+.|.|+.||.|..|+++|..
T Consensus         2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~   40 (53)
T d2bz6l1           2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP   40 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccC
Confidence            56678899999998876 578999999999999999974

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.1e-06  Score=44.83  Aligned_cols=39  Identities=38%  Similarity=0.834  Sum_probs=32.6

Q ss_pred             ccccccCCCCCccceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         75 EFDECALEDHGCEHTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        75 ~~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      ++++|..++..|.+.|.+.+|++.|.|++||.+.  +..|.
T Consensus         4 DidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~~--g~~C~   42 (43)
T d1emoa1           4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYILA--GNECV   42 (43)
T ss_dssp             CCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEES--SSCEE
T ss_pred             ceeccCCcCCCCCCEeECCCCCeEeECCCCcccC--CCccc
Confidence            5789988888888899999999999999999873  34453

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.4e-06  Score=42.58  Aligned_cols=40  Identities=38%  Similarity=0.816  Sum_probs=32.7

Q ss_pred             ccccccCCCCCccc-eeecCCCceEEeccCCeEEc-cCCccc
Q psy11864         75 EFDECALEDHGCEH-TCKNILGGYECSCKIGYELH-SDGKIC  114 (193)
Q Consensus        75 ~~~~c~~~~~~c~~-~c~~~~~~~~c~c~~g~~l~-~~~~~C  114 (193)
                      ++++|......|.+ .|.+++|++.|.|++||.+. .+++.|
T Consensus         2 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~~~g~~C   43 (44)
T d1lmja1           2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC   43 (44)
T ss_dssp             CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSE
T ss_pred             cccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccCCCCCCcC
Confidence            56889887777776 89999999999999999875 345554

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.2e-06  Score=43.62  Aligned_cols=33  Identities=33%  Similarity=0.722  Sum_probs=28.1

Q ss_pred             cccccCCCCCccceeecCCCceEEeccCCeEEcc
Q psy11864         76 FDECALEDHGCEHTCKNILGGYECSCKIGYELHS  109 (193)
Q Consensus        76 ~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l~~  109 (193)
                      +++|.. +..|.+.|.+.+|++.|.|++||.+..
T Consensus         2 idEC~~-~~~C~~~C~N~~Gsy~C~C~~Gy~l~g   34 (40)
T d1dx5i3           2 IDECEN-GGFCSGVCHNLPGTFECICGPDSALAG   34 (40)
T ss_dssp             CCHHHH-CSSCSSEEEECSSSEEEEECSSSSCEE
T ss_pred             ccccCC-CcCccCEeeCCCCCeEeECCCCCeeCC
Confidence            567764 478999999999999999999998753

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0012  Score=32.92  Aligned_cols=32  Identities=50%  Similarity=1.178  Sum_probs=26.2

Q ss_pred             ccccccCCCCCccc--eeecCCCceEEeccCCeE
Q psy11864         75 EFDECALEDHGCEH--TCKNILGGYECSCKIGYE  106 (193)
Q Consensus        75 ~~~~c~~~~~~c~~--~c~~~~~~~~c~c~~g~~  106 (193)
                      ++++|......|..  .|.+..+++.|.|++||.
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~   35 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT   35 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEE
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCCCCc
Confidence            45677765566764  899999999999999997

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.0025  Score=31.24  Aligned_cols=26  Identities=27%  Similarity=0.934  Sum_probs=21.0

Q ss_pred             ceeecCCCceEEeccCCeEEccCCcccc
Q psy11864         88 HTCKNILGGYECSCKIGYELHSDGKICL  115 (193)
Q Consensus        88 ~~c~~~~~~~~c~c~~g~~l~~~~~~C~  115 (193)
                      ..|.+.++++.|.|.+||.  .++..|.
T Consensus        13 A~C~Nt~Gsy~C~C~~Gy~--GdG~~C~   38 (40)
T d1gl4a2          13 AECRDYATGFCCRCVANYT--GNGRQCV   38 (40)
T ss_dssp             EEEEECSSCEEEEECTTEE--ECSSSEE
T ss_pred             CEeecCCCCeEeECCCCCc--CCCCEee
Confidence            3799999999999999996  4455554

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.017  Score=27.96  Aligned_cols=31  Identities=32%  Similarity=0.771  Sum_probs=22.0

Q ss_pred             ccccCCCCCccceeecCCCceEEeccCCeEE
Q psy11864         77 DECALEDHGCEHTCKNILGGYECSCKIGYEL  107 (193)
Q Consensus        77 ~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l  107 (193)
                      ++|....-.-..+|....+++.|.|++||..
T Consensus         2 d~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G   32 (39)
T d2vj3a2           2 NECVSNPCQNDATCLDQIGEFQCICMPGYEG   32 (39)
T ss_dssp             CTTTTCCCCSSCEEEECSSCEEEECCTTEES
T ss_pred             cCCcCCCCCCCCEEECCCCCEEEeCCCCCcc
Confidence            4454432222347999999999999999974

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.74  E-value=0.016  Score=27.70  Aligned_cols=31  Identities=32%  Similarity=0.610  Sum_probs=22.1

Q ss_pred             ccccCCCCCccceeecCCCceEEeccCCeEE
Q psy11864         77 DECALEDHGCEHTCKNILGGYECSCKIGYEL  107 (193)
Q Consensus        77 ~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~l  107 (193)
                      ++|....-.-..+|....+++.|.|++||..
T Consensus         3 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G   33 (37)
T d2c4fl1           3 DQCASSPCQNGGSCKDQLQSYICFCLPAFEG   33 (37)
T ss_dssp             CGGGGCCCCTTCEEEEETTEEEEECCTTEES
T ss_pred             ccCCCCCCCCCCEEECCCCCeEEECCCCCcC
Confidence            4555333222348999999999999999973

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.021  Score=27.60  Aligned_cols=31  Identities=32%  Similarity=0.711  Sum_probs=22.3

Q ss_pred             cccccCCCCCccceeecCCCceEEeccCCeE
Q psy11864         76 FDECALEDHGCEHTCKNILGGYECSCKIGYE  106 (193)
Q Consensus        76 ~~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~  106 (193)
                      .++|....-.-..+|....+++.|.|++||.
T Consensus         3 ~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~   33 (39)
T d1edmb_           3 GDQCESNPCLNGGSCKDDINSYECWCPFGFE   33 (39)
T ss_dssp             CCTTTTCCCCTTCEEEEETTEEEEECCTTCC
T ss_pred             cccCCCCCCCCCcEEEcCCCCEEEECCCCCC
Confidence            3556543322234899999999999999996

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.038  Score=25.62  Aligned_cols=30  Identities=47%  Similarity=1.172  Sum_probs=22.8

Q ss_pred             ccccCCCCCccceeecCCCceEEeccCCeE
Q psy11864         77 DECALEDHGCEHTCKNILGGYECSCKIGYE  106 (193)
Q Consensus        77 ~~c~~~~~~c~~~c~~~~~~~~c~c~~g~~  106 (193)
                      ++|+..+.--..+|.+..+.+.|.|..||.
T Consensus         2 dECsignpCGnGTCtNviGgFec~C~~GFe   31 (39)
T d1emoa2           2 DECSVGNPCGNGTCKNVIGGFECTCEEGFE   31 (39)
T ss_dssp             CGGGTTCSSSSSCEEECSSSEEECCSSSSC
T ss_pred             CccccCCccCCceeeecccceEEeecCCcC
Confidence            456655433345899999999999999985

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.067  Score=25.01  Aligned_cols=20  Identities=20%  Similarity=0.772  Sum_probs=17.6

Q ss_pred             ceeecCCCceEEeccCCeEE
Q psy11864         88 HTCKNILGGYECSCKIGYEL  107 (193)
Q Consensus        88 ~~c~~~~~~~~c~c~~g~~l  107 (193)
                      .+|+...+++.|.|++||..
T Consensus        12 g~C~~~~~~y~C~C~~g~~G   31 (35)
T d2vj3a3          12 GRCLDKINEFQCECPTGFTG   31 (35)
T ss_dssp             CEEEECSSCEEEECCTTEES
T ss_pred             cEEECCCCCeEEECCCCCCC
Confidence            47899999999999999973

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.043  Score=26.44  Aligned_cols=20  Identities=45%  Similarity=0.986  Sum_probs=17.6

Q ss_pred             ceeecCCCceEEeccCCeEE
Q psy11864         88 HTCKNILGGYECSCKIGYEL  107 (193)
Q Consensus        88 ~~c~~~~~~~~c~c~~g~~l  107 (193)
                      .+|....+++.|.|++||..
T Consensus        12 g~C~~~~~~y~C~C~~G~~G   31 (39)
T d1xkba1          12 GKCKDGLGEYTCTCLEGFEG   31 (39)
T ss_dssp             CEECCCSSSCCEECCTTEET
T ss_pred             cEEECCCCCEEEECCCCCCc
Confidence            47888999999999999973

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.17  E-value=0.14  Score=24.60  Aligned_cols=20  Identities=35%  Similarity=0.846  Sum_probs=17.6

Q ss_pred             ceeecCCCceEEeccCCeEE
Q psy11864         88 HTCKNILGGYECSCKIGYEL  107 (193)
Q Consensus        88 ~~c~~~~~~~~c~c~~g~~l  107 (193)
                      .+|....+++.|.|++||..
T Consensus        13 g~C~~~~~~y~C~C~~g~~G   32 (40)
T d1g1sa2          13 GECLETIGNYTCSCYPGFYG   32 (40)
T ss_dssp             EEEEECSSSEEEEECTTEES
T ss_pred             cEEECCCCCeEEeCCCCccC
Confidence            47889999999999999973

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.89  E-value=0.12  Score=24.77  Aligned_cols=20  Identities=25%  Similarity=0.806  Sum_probs=17.7

Q ss_pred             ceeecCCCceEEeccCCeEE
Q psy11864         88 HTCKNILGGYECSCKIGYEL  107 (193)
Q Consensus        88 ~~c~~~~~~~~c~c~~g~~l  107 (193)
                      .+|....+++.|.|++||..
T Consensus        13 g~C~~~~~~~~C~C~~g~~G   32 (39)
T d1g1ta2          13 GECVETINNYTCKCDPGFSG   32 (39)
T ss_dssp             EEEEEETTEEEEEECTTEES
T ss_pred             cEEECCCCCEEEeCCCCCcC
Confidence            47899999999999999973

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.40  E-value=0.27  Score=24.65  Aligned_cols=19  Identities=37%  Similarity=1.087  Sum_probs=17.2

Q ss_pred             ceeecCCCceEEeccCCeE
Q psy11864         88 HTCKNILGGYECSCKIGYE  106 (193)
Q Consensus        88 ~~c~~~~~~~~c~c~~g~~  106 (193)
                      .+|....+++.|.|++||.
T Consensus        19 G~C~~~~~~y~C~C~~G~~   37 (48)
T d1autl1          19 GTCIDGIGSFSCDCRSGWE   37 (48)
T ss_dssp             EEECCCSSCCCEEECTTEE
T ss_pred             CEEECCCCCCeEeCCCCCc
Confidence            4788999999999999997